Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1558
Parameters: 2 7 7 80 10 50 1000
Length:  66954

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10742--10953
81
2.6
81
95
0
370
38
12
13
35
1.83
16714--16802
35
2.5
36
89
10
139
46
2
5
46
1.39
19022--19065
21
2.2
20
83
4
52
29
20
25
25
1.99
19083--19144
6
9.3
6
80
13
52
72
6
20
0
1.06
19086--19167
42
2.0
42
97
0
155
65
9
24
0
1.22
19998--20066
31
2.3
31
85
7
88
21
10
20
47
1.79
20057--20105
20
2.5
20
96
0
89
34
16
26
22
1.95
21823--21873
23
2.2
23
89
6
77
62
0
1
35
1.06
21820--21883
30
2.2
28
86
5
83
59
0
1
39
1.07
23128--23152
12
2.1
12
100
0
50
8
8
20
64
1.46
24119--24187
22
3.0
24
68
23
76
40
10
4
44
1.58
24820--24857
13
2.9
13
92
0
67
42
28
5
23
1.76
29285--29340
21
2.7
21
85
0
76
26
8
33
30
1.87
29746--30043
31
10.1
30
83
9
364
37
10
0
51
1.41
29804--30025
112
2.0
112
85
7
308
38
11
0
49
1.45
30131--30281
6
23.0
6
77
19
117
13
51
1
33
1.52
30131--30281
13
11.5
13
76
15
125
13
51
1
33
1.52
30106--30281
43
4.2
41
73
16
137
14
50
2
32
1.56
30156--30228
21
3.4
21
70
17
69
9
56
4
30
1.50
30156--30226
23
3.3
22
70
20
69
9
54
4
30
1.52
31987--32035
6
8.2
6
82
8
64
65
2
0
32
1.04
41401--41462
29
2.1
30
84
3
81
37
11
20
30
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47881--48260
207
1.9
201
89
3
589
48
14
13
22
1.80
48947--48978
16
2.0
16
100
0
64
37
18
12
31
1.88
51947--52005
31
1.9
31
85
0
82
40
5
3
50
1.41
52886--52927
19
2.3
19
87
4
59
47
2
4
45
1.36
53082--53123
6
7.0
6
100
0
84
33
0
66
0
0.92
57898--57954
28
2.0
29
96
3
107
19
17
21
42
1.90
58924--58987
31
2.1
31
96
0
119
20
29
14
35
1.92
59160--59209
24
2.0
25
96
3
93
28
24
26
22
1.99
66095--66127
2
17.0
2
87
6
50
51
0
45
3
1.16

Tables:   1

The End!