Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92286807
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3302597 characters in sequence are not A, C, G, or T
File 109 of 271
Found at i:37331360 original size:36 final size:36
Alignment explanation
Indices: 37331262--37331460 Score: 224
Period size: 36 Copynumber: 5.4 Consensus size: 36
37331252 TCAAAAAAAA
* * ** *
37331262 TTCGTGTTTTAAAAAAAACTTTCTCGTGTCAAAAAAAT
1 TTCGTGTTTTCAAAAAAA--TTCTCATGTTTAAAAATT
37331300 TTCGTGTTTTCAAAAAAAAATTCTCATGTTTAAAAATT
1 TTCGTGTTTTC--AAAAAAATTCTCATGTTTAAAAATT
*
37331338 TTTGTGTTTTCAAAAAAATTCTCATGTTTAAAAATT
1 TTCGTGTTTTCAAAAAAATTCTCATGTTTAAAAATT
* *
37331374 TTCGCGTTTTCAAAAAAGTT-TCATGTTTCAAAAATT
1 TTCGTGTTTTCAAAAAAATTCTCATGTTT-AAAAATT
* * *
37331410 TTAGCGTTTTC-AAAAAATTCTCATGTTTCATAAA-T
1 TTCGTGTTTTCAAAAAAATTCTCATGTTT-AAAAATT
37331445 TTCGTGTTTTCAAAAA
1 TTCGTGTTTTCAAAAA
37331461 TTATTATCGT
Statistics
Matches: 142, Mismatches: 14, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
35 25 0.18
36 76 0.54
38 34 0.24
40 7 0.05
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.42
Consensus pattern (36 bp):
TTCGTGTTTTCAAAAAAATTCTCATGTTTAAAAATT
Found at i:37331430 original size:71 final size:72
Alignment explanation
Indices: 37331294--37331460 Score: 232
Period size: 71 Copynumber: 2.3 Consensus size: 72
37331284 CTCGTGTCAA
* *
37331294 AAAAATTTCGTGTTTTCAAAAAAAAATTCTCATGTTTAAAAATTTTTGTGTTTTCAAAAAAATTC
1 AAAAATTTCGTGTTTTC--AAAAAAATTCTCATGTTTAAAAATTTTAGCGTTTTCAAAAAAATTC
37331359 TCATGTTT-
64 TCATGTTTC
* *
37331367 AAAAATTTTCGCGTTTTCAAAAAAGTT-TCATGTTTCAAAAATTTTAGCGTTTTC-AAAAAATTC
1 AAAAA-TTTCGTGTTTTCAAAAAAATTCTCATGTTT-AAAAATTTTAGCGTTTTCAAAAAAATTC
37331430 TCATGTTTC
64 TCATGTTTC
*
37331439 ATAAATTTCGTGTTTTCAAAAA
1 AAAAATTTCGTGTTTTCAAAAA
37331461 TTATTATCGT
Statistics
Matches: 85, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
71 41 0.48
72 28 0.33
73 5 0.06
74 11 0.13
ACGTcount: A:0.37, C:0.11, G:0.09, T:0.43
Consensus pattern (72 bp):
AAAAATTTCGTGTTTTCAAAAAAATTCTCATGTTTAAAAATTTTAGCGTTTTCAAAAAAATTCTC
ATGTTTC
Found at i:37333121 original size:4 final size:4
Alignment explanation
Indices: 37333112--37333160 Score: 89
Period size: 4 Copynumber: 12.2 Consensus size: 4
37333102 CATCCATTGG
*
37333112 TCAT TCAT TCAT TCAT TCAT CCAT TCAT TCAT TCAT TCAT TCAT TCAT
1 TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT
37333160 T
1 T
37333161 GCATGTACAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 43 1.00
ACGTcount: A:0.24, C:0.27, G:0.00, T:0.49
Consensus pattern (4 bp):
TCAT
Found at i:37335082 original size:13 final size:13
Alignment explanation
Indices: 37335064--37335093 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
37335054 TCCAGCAACT
37335064 ATGAATTTATTTC
1 ATGAATTTATTTC
*
37335077 ATGAATTTATTTG
1 ATGAATTTATTTC
37335090 ATGA
1 ATGA
37335094 TGATCCAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.13, T:0.50
Consensus pattern (13 bp):
ATGAATTTATTTC
Found at i:37335262 original size:50 final size:50
Alignment explanation
Indices: 37335187--37335430 Score: 353
Period size: 50 Copynumber: 4.9 Consensus size: 50
37335177 CATTTGGGTA
* * *
37335187 GAGAGGTCCCATGTAAGACTATGTCTGGGACTTGGCATTGGCACCAAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
37335237 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
*
37335287 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* *** * * *
37335337 GAGAGATCCCCCATAAGACCATGTTTGGGACATGGCATGGGCACCGACAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
** *
37335387 GAGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 GAG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
37335431 TGTTATTATC
Statistics
Matches: 174, Mismatches: 19, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
50 141 0.81
51 33 0.19
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.21
Consensus pattern (50 bp):
GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
Found at i:37335520 original size:15 final size:15
Alignment explanation
Indices: 37335500--37335529 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
37335490 TAAACGAATC
37335500 ATGTTCATGAAAGTT
1 ATGTTCATGAAAGTT
37335515 ATGTTCATGAAAGTT
1 ATGTTCATGAAAGTT
37335530 CAGAAGAGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (15 bp):
ATGTTCATGAAAGTT
Found at i:37341191 original size:11 final size:11
Alignment explanation
Indices: 37341158--37341184 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
37341148 TATTATGTCT
37341158 AAAAAAACAAA
1 AAAAAAACAAA
37341169 AAAAAAACAAA
1 AAAAAAACAAA
37341180 AAAAA
1 AAAAA
37341185 TAAAAAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAACAAA
Found at i:37342168 original size:79 final size:78
Alignment explanation
Indices: 37342038--37343719 Score: 1602
Period size: 79 Copynumber: 21.4 Consensus size: 78
37342028 TTTCAAGAAA
* * ***
37342038 TATTTTTCAATTTATGTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
1 TATTTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
* *
37342103 CCACACGCCGAGG
66 TCACATGCCGAGG
*
37342116 TATTTTTTAATTTCTGTTTTTCAAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGG
1 TATTTTTTAATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
*
37342181 GTCAC--GCTGAGG
65 GTCACATGCCGAGG
* **
37342193 TA-TTTTCAATTTCT-TTTTT---TTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG
1 TATTTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
* *
37342252 ACACATGCCAAGG
66 TCACATGCCGAGG
* * *
37342265 TATTTCTTTTAAATTTCTTTTTTTTTTAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGC
1 TA-TT-TTTT-AATTTC---TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* *
37342330 CTC-AGACACATGCCGAGG
60 CTCGGGTCACATGCCGAGG
*
37342348 TATTTCTTTTAAATTTCTATTTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TA-TT-TTTT-AATTTC--TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
37342412 TCGGGTCACATACCGAGG
61 TCGGGTCACATGCCGAGG
* *
37342430 TATCTTTTAAATTTCTATTTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
1 TAT-TTTTTAATTTC--TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
*
37342494 GGGTCACATACCGAGG
63 GGGTCACATGCCGAGG
* * *** * * * **
37342510 TATCTTTTAAATTTCTATTTTTTTCAAAAATCAACTCATAATGCGAGAAGTAAGTTGAGCCTCAA
1 TAT-TTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
37342575 GTCACATGCCGAGG
65 GTCACATGCCGAGG
*
37342589 TATTTCTTTTAAATTTCTATTTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TA-TT-TTTT-AATTTC--TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
37342653 TC-GGACACATGCCGAGG
61 TCGGGTCACATGCCGAGG
* * * * *
37342670 TACTTTTCAATTTCTGCTTTTC---AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTGGG
1 TATTTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
*
37342732 TCACATACCGAGG
66 TCACATGCCGAGG
* * *** * *
37342745 TATCTTTTAAATTTATGTTTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAG
1 TAT-TTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
* *
37342810 GTCACACGCTGAGG
65 GTCACATGCCGAGG
* * *
37342824 TATTTTTTAAATTTATGTTTTTTTTCAAAAAAATCAACTCATATTGTGAAAGGTGAGTTGAGCCT
1 TATTTTTT-AATTTCTG---TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
*
37342889 C-GGACACATGCCGAGG
62 CGGGTCACATGCCGAGG
* * ***
37342905 TACTTTTCAATTTCTGTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
1 TATTTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
37342970 TCACATGCCGAGG
66 TCACATGCCGAGG
* ** *
37342983 TATCTTTTGAATTTCTGTTTTTTC--AAAAATCAACTCATATTTTGAGAGGTGAGTTGAGCCTCA
1 TAT-TTTTTAATTTCTG-TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
* *
37343046 GGTCACACGCTGAGG
64 GGTCACATGCCGAGG
* *
37343061 TATTTTTTAAATTTATGTTTTTGTTTTCAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAG
1 TATTTTTT-AATTTCTG----T-TTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* *
37343126 CCTC-AGACACATGCCGAGG
59 CCTCGGGTCACATGCCGAGG
* *
37343145 TATTTCTTTTAAATTTCTATTTTTTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGC
1 TA-TT-TTTT-AATTTC---TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
** *
37343210 CTC-GCACACATGCCGAGC
60 CTCGGGTCACATGCCGAGG
* * * *
37343228 TACTTTTCAATTTCTGTTTTT--TAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGG
1 TATTTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
**
37343291 TCACATATCGAGG
66 TCACATGCCGAGG
* * * *
37343304 TATCTTTTAAATTT-T-TTTTT-TAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
1 TAT-TTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
* *
37343366 GTCACACGCTGAGG
65 GTCACATGCCGAGG
* * *
37343380 TATTTTTTTCAAATTAATGTTTTTTTC-AAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCC
1 TA-TTTTTT--AATT--TCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* * **
37343444 TTGGGTCACACGTTGAGG
61 TCGGGTCACATGCCGAGG
* *
37343462 TATTTTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGG
1 TATTTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
* ** *
37343526 TCGCACACTGAGG
66 TCACATGCCGAGG
* * * *
37343539 TATTTTTCAATTTCTGTTGTTCAAAAAAATCAACTCATATTGCGATG-TGTGAGTTGAGCCTCAG
1 TATTTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGA-GAGGTGAGTTGAGCCTCGG
*
37343603 G-CACATGCCAAGG
65 GTCACATGCCGAGG
** * * * * * *
37343616 TA-TTTTCGATTTTTGTTTTTC--GAAGATTAACTCATAATT-CAAGAGGTGAGTTGAGCTTCGG
1 TATTTTTTAATTTCTGTTTTTCAAAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCGG
*
37343677 GTCGCATGCCG-GG
65 GTCACATGCCGAGG
* *
37343690 CTA-TTTTTGATTTCT-TTTTTTAATAAAAAT
1 -TATTTTTTAATTTCTGTTTTTCAA-AAAAAT
37343720 AAAGAATAAA
Statistics
Matches: 1368, Mismatches: 169, Indels: 135
0.82 0.10 0.08
Matches are distributed among these distances:
70 5 0.00
71 35 0.03
72 7 0.01
73 1 0.00
74 71 0.05
75 86 0.06
76 120 0.09
77 162 0.12
78 151 0.11
79 172 0.13
80 115 0.08
81 92 0.07
82 161 0.12
83 123 0.09
84 18 0.01
85 38 0.03
86 10 0.01
89 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (78 bp):
TATTTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
TCACATGCCGAGG
Found at i:37342776 original size:235 final size:234
Alignment explanation
Indices: 37342041--37343710 Score: 1835
Period size: 235 Copynumber: 7.1 Consensus size: 234
37342031 CAAGAAATAT
* * * *
37342041 TTTTCAATTTATGTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCCA
1 TTTTAAATTTCTGTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
* *
37342106 CACGCCGAGGTATTTTTT-AATTTC-TGTTTTTCAAAAAAAATCAACTCATAATGCGAGAGGTGA
66 CACGCCGAGGTATTTTTTAAATTTCTTTTTTTTC--AAAAAATCAACTCATATTGCGAGAGGTGA
* * * **
37342169 GTTGAGCCTCGGGTCAC--GCTGAGGTA-TTTTCAATTTCT-TTTTT-TTAAATCAACTCATATT
129 GTTGAGCCTCAGGACACATGCCGAGGTACTTTTCAATTTCTGTTTTTCAAAAATCAACTCATATT
* * *
37342229 GCGAGAGGTGAGTTGAGCC-TCGGACACATGCCAAGGTATTTC
194 GCGAGAGGTGAGTTGAGCCTTGGGTCACATGCCGAGGTA--TC
* * *
37342271 TTTTAAATTTCTTTTTTTTTTAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCA-G
1 TTTTAAATTTC-TGTTTTTTT--CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* *
37342335 ACACATGCCGAGGTATTTCTTTTAAATTTCTATTTTTTTCAAAAAATCAACTCATATTGCGAGAG
63 TCACACGCCGAGGTA-TT-TTTTAAATTTCT-TTTTTTTCAAAAAATCAACTCATATTGCGAGAG
* * * * *
37342400 GTGAGTTGAGCCTCGGGTCACATACCGAGGTATCTTTTAAATTTCTATTTTTTTCAAAAAATCAA
125 GTGAGTTGAGCCTCAGGACACATGCCGAGGTA-CTTTTCAATTTC--TGTTTTTC-AAAAATCAA
* *
37342465 CTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGGTATC
186 CTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACATGCCGAGGTATC
* * * * *
37342514 TTTTAAATTTCTATTTTTTTCAAAAATCAACTCATAATGCGAGAAGTAAGTTGAGCCTCAAGTCA
1 TTTTAAATTTCTGTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
*
37342579 CATGCCGAGGTATTTCTTTTAAATTTCTATTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTG
66 CACGCCGAGGTA-TT-TTTTAAATTTCT-TTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTG
*
37342644 AGTTGAGCCTC-GGACACATGCCGAGGTACTTTTCAATTTCTGCTTTTC-AAAATCAACTCATAT
128 AGTTGAGCCTCAGGACACATGCCGAGGTACTTTTCAATTTCTGTTTTTCAAAAATCAACTCATAT
* *
37342707 TGCGAGAGATGAGTTGAGCCTTGGGTCACATACCGAGGTATC
193 TGCGAGAGGTGAGTTGAGCCTTGGGTCACATGCCGAGGTATC
* *
37342749 TTTTAAATTTATGTTTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGGTCA
1 TTTTAAATTTCTGTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
* * * *
37342814 CACGCTGAGGTATTTTTTAAATTTATGTTTTTTTTCAAAAAAATCAACTCATATTGTGAAAGGTG
66 CACGCCGAGGTATTTTTTAAA-TT-TCTTTTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTG
37342879 AGTTGAGCCTC-GGACACATGCCGAGGTACTTTTCAATTTCTGTTTTTTTCAAAAATCAACTCAT
128 AGTTGAGCCTCAGGACACATGCCGAGGTACTTTTCAATTTCTG--TTTTTCAAAAATCAACTCAT
*
37342943 ATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATC
191 ATTGCGAGAGGTGAGTTGAGCCTTGGGTCACATGCCGAGGTATC
* **
37342987 TTTTGAATTTCTG-TTTTTTCAAAAATCAACTCATATTTTGAGAGGTGAGTTGAGCCTCAGGTCA
1 TTTTAAATTTCTGTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
* * *
37343051 CACGCTGAGGTATTTTTTAAATTTATGTTTTTGTTTTCAAAAAAAATCAACTCATATTGCAAGAG
66 CACGCCGAGGTATTTTTTAAA-TT-T-CTTTT-TTTTC--AAAAAATCAACTCATATTGCGAGAG
* *
37343116 GTGAGTTGAGCCTCA-GACACATGCCGAGGTATTTCTTTTAAATTTCTATTTTTTTTCAAAAAAA
125 GTGAGTTGAGCCTCAGGACACATGCCGAGGTA---CTTTTCAATTTC---TGTTTTTC--AAAAA
* * ** *
37343180 TCAACTCATATTGTGAGAGGTGAGTTGAGCC-TCGCACACATGCCGAGCTA-C
182 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACATGCCGAGGTATC
* * *
37343231 TTTTCAATTTCTG-TTTTTT-AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGGTCA
1 TTTTAAATTTCTGTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
*** * *
37343294 CATATCGAGGTATCTTTTAAA-TT-TTTTTTTT-AAAAAACCAACTCATATTGCGAGAGGTGAGT
66 CACGCCGAGGTATTTTTTAAATTTCTTTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGT
* * * * * *
37343356 TGAGCCTCAGGTCACACGCTGAGGTATTTTTTTCAAATTAATGTTTTTTTCAAAAAATCAACTCA
131 TGAGCCTCAGGACACATGCCGAGGTA--CTTTTC-AATT--TCTGTTTTTC-AAAAATCAACTCA
* * **
37343421 TATTGCGAGATGTGAGTTGAGCCTTGGGTCACACGTTGAGGTAT-
190 TATTGCGAGAGGTGAGTTGAGCCTTGGGTCACATGCCGAGGTATC
* **
37343465 TTTTCAATTTCTG--TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTC
1 TTTTAAATTTCTGTTTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTC
* * * * * * *
37343528 GCACACTGAGGTA-TTTTTCAATTTC-TGTTGTTCAAAAAAATCAACTCATATTGCGATG-TGTG
65 ACACGCCGAGGTATTTTTTAAATTTCTTTTTTTTC-AAAAAATCAACTCATATTGCGA-GAGGTG
* * * * * *
37343590 AGTTGAGCCTCAGG-CACATGCCAAGGTA-TTTTCGATTTTTGTTTTTCGAAGATTAACTCATAA
128 AGTTGAGCCTCAGGACACATGCCGAGGTACTTTTCAATTTCTGTTTTTCAAAAATCAACTCAT-A
* *
37343653 TT-CAAGAGGTGAGTTGAG-CTTCGGGTCGCATGCCG-GGCTAT-
192 TTGCGAGAGGTGAGTTGAGCCTT-GGGTCACATGCCGAGG-TATC
*
37343694 TTTT-GATTTCT-TTTTTT
1 TTTTAAATTTCTGTTTTTT
37343711 AATAAAAATA
Statistics
Matches: 1265, Mismatches: 120, Indels: 111
0.85 0.08 0.07
Matches are distributed among these distances:
228 11 0.01
229 45 0.04
230 20 0.02
231 8 0.01
232 17 0.01
233 91 0.07
234 99 0.08
235 320 0.25
236 11 0.01
237 142 0.11
238 74 0.06
239 26 0.02
240 104 0.08
241 81 0.06
242 13 0.01
243 80 0.06
244 59 0.05
245 28 0.02
246 36 0.03
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (234 bp):
TTTTAAATTTCTGTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
CACGCCGAGGTATTTTTTAAATTTCTTTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGT
TGAGCCTCAGGACACATGCCGAGGTACTTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGC
GAGAGGTGAGTTGAGCCTTGGGTCACATGCCGAGGTATC
Found at i:37342792 original size:394 final size:390
Alignment explanation
Indices: 37342054--37343679 Score: 1784
Period size: 394 Copynumber: 4.1 Consensus size: 390
37342044 TCAATTTATG
* **
37342054 TTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCCACACGCCGAGGTAT
1 TTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGGTAT
* ** *
37342119 -TTTTTAATTTCTGTTTTTCAAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGT
66 CTTTTAAATTTCTGTTTTT-TTAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGGT
* *
37342183 CAC--GCTGAGGTA-TTTTCAATTTCTTTTTTTT---AAATCAACTCATATTGCGAGAGGTGAGT
130 CACATGCCGAGGTATTTTTAAATTTCTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGT
* * * *
37342242 TGAGCCTCGGACACATGCCAAGGTATTTCTTTTAAATTTCTTTTTTTTTTAAAAAAAATCAACTC
195 TGAGCCTCGGACACACGCCGAGGTA--TCTTTTAAATTTC---TGTTTTT--CAAAAATCAACTC
* * * *
37342307 ATATTGTGAGAGGTGAGTTGAGCCTCAGACACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
253 ATATTGCGAGAGGTGAGTTGAGCCTCAGACACATACCGAGGTA-TTCTTTTAAATTTATGTTTTT
* *
37342372 TTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGGTATCTTT
317 TTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGCCGAGGTATCTTT
37342437 TAAATTTCT
382 TAAATTTCT
37342446 ATTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGGT
1 -TTTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGGT
* * * * *
37342511 ATCTTTTAAATTTCTATTTTTTTCAAAAATCAACTCATAATGCGAGAAGTAAGTTGAGCCTCAAG
64 ATCTTTTAAATTTCTGTTTTTTTAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGG
37342576 TCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTTTTCAAAAAATCAACTCATATTGCGAGAG
129 TCACATGCCGAGGTA--T-TTTTAAATTTCT-TTTTTTTC-AAAAATCAACTCATATTGCGAGAG
* * *
37342641 GTGAGTTGAGCCTCGGACACATGCCGAGGTA-CTTTTCAATTTCTGCTTTTC-AAAATCAACTCA
189 GTGAGTTGAGCCTCGGACACACGCCGAGGTATCTTTTAAATTTCTGTTTTTCAAAAATCAACTCA
* ** *
37342704 TATTGCGAGAGATGAGTTGAGCCTTGGGTCACATACCGAGGTA-TCTTTTAAATTTATGTTTTTT
254 TATTGCGAGAGGTGAGTTGAGCC-TCAGACACATACCGAGGTATTCTTTTAAATTTATGTTTTTT
* * * *
37342768 TC-AAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTTT
318 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGCCGAGGTATCTTTT
*
37342832 AAATTTATGT
383 AAA-TT-TCT
* * * *
37342842 TTTTTTTCAAAAAAATCAACTCATATTGTGAAAGGTGAGTTGAGCCTC-GGACACATGCCGAGGT
1 TTTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGGT
* * * *
37342906 A-CTTTTCAATTTCTGTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
64 ATCTTTTAAATTTCTGTTTTTTTAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGG
* * **
37342970 TCACATGCCGAGGTATCTTTTGAATTTCTGTTTTTTCAAAAATCAACTCATATTTTGAGAGGTGA
129 TCACATGCCGAGGTAT-TTTTAAATTTCTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGA
* * * *
37343035 GTTGAGCCTCAGGTCACACGCTGAGGTATTTTTTAAATTTATGTTTTTGTTTTCAAAAAAAATCA
193 GTTGAGCCTC-GGACACACGCCGAGGTATCTTTTAAATTTCTG----T-TTTTC---AAAAATCA
* *
37343100 ACTCATATTGCAAGAGGTGAGTTGAGCCTCAGACACATGCCGAGGTATTTCTTTTAAATTTCTAT
249 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACATACCGAGGTA-TTCTTTTAAA-TT-TAT
* ** *
37343165 -TTTTTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTC-GCACACATGCCGAGC
311 GTTTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGCCGAGG
*
37343228 TA-CTTTTCAATTTCT
375 TATCTTTTAAATTTCT
* * *
37343243 GTTTTTT-AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGGTCACATATCGAGGTAT
1 TTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGGTAT
* *
37343307 CTTTTAAA-TT-T-TTTTTTTAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTC
66 CTTTTAAATTTCTGTTTTTTTAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGGTC
* * ** *
37343369 ACACGCTGAGGTATTTTTTTCAAATTAATGTTTTTTTCAAAAAATCAACTCATATTGCGAGATGT
131 ACATGCCGAGGTA--TTTTT-AAATTTCT-TTTTTTTC-AAAAATCAACTCATATTGCGAGAGGT
* * ** *
37343434 GAGTTGAGCCTTGGGTCACACGTTGAGGTAT-TTTTCAATTTCTGTTTTTCAAAAAATCAACTCA
191 GAGTTGAGCC-TCGGACACACGCCGAGGTATCTTTTAAATTTCTGTTTTTC-AAAAATCAACTCA
** * * * * * * *
37343498 TATTGCGAGAGGTGAGTTGAGCCTTGGGTCGCACACTGAGGTA-T-TTTTCAATTTCTG--TTGT
254 TATTGCGAGAGGTGAGTTGAGCC-TCAGACACATACCGAGGTATTCTTTTAAATTTATGTTTTTT
* *
37343559 TCAAAAAAATCAACTCATATTGCGATG-TGTGAGTTGAGCCTCAGG-CACATGCCAAGGTA--TT
318 TC-AAAAAATCAACTCATATTGCGA-GAGGTGAGTTGAGCCTCAGGTCACATGCCGAGGTATCTT
**
37343620 TTCGATTT-T
381 TTAAATTTCT
* * * * * *
37343629 TGTTTTTCGAAGATTAACTCATAATT-CAAGAGGTGAGTTGAGCTTCGGGTC
1 TTTTTTTCAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCGGGTC
37343680 GCATGCCGGG
Statistics
Matches: 1064, Mismatches: 121, Indels: 102
0.83 0.09 0.08
Matches are distributed among these distances:
386 6 0.01
387 42 0.04
388 56 0.05
389 4 0.00
390 38 0.04
391 27 0.03
392 25 0.02
393 44 0.04
394 237 0.22
395 67 0.06
396 81 0.08
397 79 0.07
398 40 0.04
399 27 0.03
400 51 0.05
401 98 0.09
402 23 0.02
403 16 0.02
404 15 0.01
405 88 0.08
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (390 bp):
TTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGGTAT
CTTTTAAATTTCTGTTTTTTTAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGGTC
ACATGCCGAGGTATTTTTAAATTTCTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
GAGCCTCGGACACACGCCGAGGTATCTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCG
AGAGGTGAGTTGAGCCTCAGACACATACCGAGGTATTCTTTTAAATTTATGTTTTTTTCAAAAAA
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGCCGAGGTATCTTTTAAATTTCT
Found at i:37343416 original size:556 final size:550
Alignment explanation
Indices: 37342054--37343621 Score: 2107
Period size: 556 Copynumber: 2.8 Consensus size: 550
37342044 TCAATTTATG
*
37342054 TTTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGC-CACACGCCGAGGT
1 TTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC--GCACACATGCCGAGGT
* * * *
37342117 ATTTTTTAATTTCTGTTTTTCAAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGG
64 ACTTTTCAATTTCTGTTTTT---TAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
** * *
37342182 TCAC-GCT-GAGGTA--TTTTCAATTTCTTTTTTT-TAAATCAACTCATATTGCGAGAGGTGAGT
126 TCACATATCGAGGTATCTTTTAAATTTCTTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGT
* * ** ** * *
37342242 TGAGCCTC-GGACACATGCCAAGGTATTTCTTTTAAATTTCTTTTTTTTTTAAAAAAAATCAACT
191 TGAGCCTCAGGTCACACGCTGAGGTATTT-TTTTAAA-TTAATGTTTTTTT-CAAAAAATCAACT
* * *
37342306 CATATTGTGAGAGGTGAGTTGAGCCTCAGACACATGCCGAGGTATTTCTTTTAAATTTCTATTTT
253 CATATTGTGAGAGGTGAGTTGAGCCTCGGACACATGCCGAGGTA---CTTTTCAATTTCTGTTTT
37342371 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGGTATCTT
315 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGGTATCTT
* ** *
37342436 TTAAATTTCTATTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC
380 TTAAATTTCT-GTTTTTTCAAAAAATCAACTCATATTTTGAGAGGTGAGTTGAGCCTCAGGTCAC
* * *
37342501 ATACCGAGGTATCTTTTAAATTTCTATTTTTTTCAAAAATCAACTCATAATGCGAGAAGTAAGTT
444 ATGCCGAGGTATTTTTTAAATTTCTATTTTTTTCAAAAATCAACTCATAATGCAAGAAGTAAGTT
*
37342566 GAGCCTCAAGTCACATGCCGAGGTATTTCTTTTAAATTTCTA
509 GAGCCTCAAGACACATGCCGAGGTATTTCTTTTAAATTTCTA
*
37342608 TTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACATGCCGAGGTAC
1 TTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGCACACATGCCGAGGTAC
* * * *
37342673 TTTTCAATTTCTG-CTTTTCAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTGGGTCACA
66 TTTTCAATTTCTGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
* * *
37342737 TACCGAGGTATCTTTTAAATTTATGTTTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTG
131 TATCGAGGTATCTTTTAAA-TT-TCTTTTTTT-AAAAATCAACTCATATTGCGAGAGGTGAGTTG
*
37342802 AGCCTCAGGTCACACGCTGAGGTA-TTTTTTAAATTTATGTTTTTTTTCAAAAAAATCAACTCAT
193 AGCCTCAGGTCACACGCTGAGGTATTTTTTTAAATTAATG-TTTTTTTC-AAAAAATCAACTCAT
*
37342866 ATTGTGAAAGGTGAGTTGAGCCTCGGACACATGCCGAGGTACTTTTCAATTTCTGTTTTTTTC-A
256 ATTGTGAGAGGTGAGTTGAGCCTCGGACACATGCCGAGGTACTTTTCAATTTCTGTTTTTTTCAA
* *
37342930 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATCTTTTGAAT
321 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGGTATCTTTTAAAT
* *
37342995 TTCTGTTTTTTC-AAAAATCAACTCATATTTTGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGA
386 TTCTGTTTTTTCAAAAAATCAACTCATATTTTGAGAGGTGAGTTGAGCCTCAGGTCACATGCCGA
* * * * *
37343059 GGTATTTTTTAAATTTATGTTTTTGTTTTCAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTG
451 GGTATTTTTTAAA-TT-TCTATTT-TTTTC---AAAAATCAACTCATAATGCAAGAAGTAAGTTG
37343124 AGCCTC-AGACACATGCCGAGGTATTTCTTTTAAATTTCTA
510 AGCCTCAAGACACATGCCGAGGTATTTCTTTTAAATTTCTA
* *
37343164 TTTTTTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGCACACATGCCGAGCT
1 -TTTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGCACACATGCCGAGGT
*
37343229 ACTTTTCAATTTCTGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGGTCA
64 ACTTTTCAATTTCTGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
*
37343294 CATATCGAGGTATCTTTTAAATTT-TTTTTTTAAAAAACCAACTCATATTGCGAGAGGTGAGTTG
129 CATATCGAGGTATCTTTTAAATTTCTTTTTTT-AAAAATCAACTCATATTGCGAGAGGTGAGTTG
37343358 AGCCTCAGGTCACACGCTGAGGTATTTTTTTCAAATTAATGTTTTTTTCAAAAAATCAACTCATA
193 AGCCTCAGGTCACACGCTGAGGTATTTTTTT-AAATTAATGTTTTTTTCAAAAAATCAACTCATA
* * * * * ** *
37343423 TTGCGAGATGTGAGTTGAGCCTTGGGTCACACGTTGAGGTATTTTTCAATTTCTG--TTTTTCAA
257 TTGTGAGAGGTGAGTTGAGCC-TCGGACACATGCCGAGGTACTTTTCAATTTCTGTTTTTTTCAA
* * * * *
37343486 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCGCACACTGAGGTAT-TTTTCAAT
321 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGGTATCTTTTAAAT
* *
37343550 TTCTG-TTGTTCAAAAAAATCAACTCATA--TTGCGATGTGTGAGTTGAGCCTCAGG-CACATGC
386 TTCTGTTTTTTC-AAAAAATCAACTCATATTTTGAGA-G-GTGAGTTGAGCCTCAGGTCACATGC
*
37343611 CAAGGTATTTT
448 CGAGGTATTTT
37343622 CGATTTTTGT
Statistics
Matches: 905, Mismatches: 79, Indels: 59
0.87 0.08 0.06
Matches are distributed among these distances:
550 41 0.05
551 58 0.06
552 15 0.02
553 77 0.09
554 74 0.08
555 74 0.08
556 223 0.25
557 152 0.17
558 114 0.13
559 77 0.09
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.35
Consensus pattern (550 bp):
TTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGCACACATGCCGAGGTAC
TTTTCAATTTCTGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
TATCGAGGTATCTTTTAAATTTCTTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
CTCAGGTCACACGCTGAGGTATTTTTTTAAATTAATGTTTTTTTCAAAAAATCAACTCATATTGT
GAGAGGTGAGTTGAGCCTCGGACACATGCCGAGGTACTTTTCAATTTCTGTTTTTTTCAAAAAAT
CAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGGTATCTTTTAAATTTCTG
TTTTTTCAAAAAATCAACTCATATTTTGAGAGGTGAGTTGAGCCTCAGGTCACATGCCGAGGTAT
TTTTTAAATTTCTATTTTTTTCAAAAATCAACTCATAATGCAAGAAGTAAGTTGAGCCTCAAGAC
ACATGCCGAGGTATTTCTTTTAAATTTCTA
Found at i:37343923 original size:29 final size:29
Alignment explanation
Indices: 37343869--37344035 Score: 108
Period size: 29 Copynumber: 5.7 Consensus size: 29
37343859 TACAAAAATA
* *
37343869 AAAAATTACATTTTGGCCCCCAAACTTTTC
1 AAAAATTACATTTT-GACCCCTAACTTTTC
37343899 AAAAATTACATTTTGACCCCTAACTTTTC
1 AAAAATTACATTTTGACCCCTAACTTTTC
* * ** *
37343928 TAAATTTACACCTTGACCCCTAA-TATTTT
1 AAAAATTACATTTTGACCCCTAACT-TTTC
** * * * *
37343957 GTAAATTACA-TTCGAGCCCTTAAAATTTCC
1 AAAAATTACATTTTGA-CCCCT-AACTTTTC
*
37343987 AAAAATTACATTTT-AGCCCC-ATATTTTTC
1 AAAAATTACATTTTGA-CCCCTA-ACTTTTC
* *
37344016 TAAAATTACATTTTTACCCC
1 AAAAATTACATTTTGACCCC
37344036 AAAAACTTCA
Statistics
Matches: 108, Mismatches: 22, Indels: 15
0.74 0.15 0.10
Matches are distributed among these distances:
28 5 0.05
29 68 0.63
30 32 0.30
31 3 0.03
ACGTcount: A:0.34, C:0.24, G:0.05, T:0.38
Consensus pattern (29 bp):
AAAAATTACATTTTGACCCCTAACTTTTC
Found at i:37344450 original size:22 final size:23
Alignment explanation
Indices: 37344425--37344485 Score: 63
Period size: 22 Copynumber: 2.6 Consensus size: 23
37344415 AACAGCAAGC
37344425 AAAGAGAAGAAAAAG-AGAAAGA
1 AAAGAGAAGAAAAAGAAGAAAGA
37344447 AAAGAAGGGAAAGAAAAAGAAGAAAGA
1 AAAG-A--G-AAGAAAAAGAAGAAAGA
*
37344474 AGAG-GAAGAAAA
1 AAAGAGAAGAAAA
37344486 GGGGAGTGCC
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
22 11 0.33
23 2 0.06
25 1 0.03
26 9 0.27
27 10 0.30
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (23 bp):
AAAGAGAAGAAAAAGAAGAAAGA
Found at i:37344591 original size:13 final size:13
Alignment explanation
Indices: 37344575--37344640 Score: 82
Period size: 13 Copynumber: 5.2 Consensus size: 13
37344565 CCGAAAGAAG
37344575 AAGAAGAAAAAGA
1 AAGAAGAAAAAGA
37344588 AAGAAGAAAAAGA
1 AAGAAGAAAAAGA
*
37344601 GAGAAGAAAAAGA
1 AAGAAGAAAAAGA
*
37344614 GA-AAGAAAAA-A
1 AAGAAGAAAAAGA
*
37344625 GAGAAGAAAAAAGA
1 AAGAAG-AAAAAGA
37344639 AA
1 AA
37344641 AAAGGGAAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
11 3 0.06
12 11 0.23
13 32 0.67
14 2 0.04
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (13 bp):
AAGAAGAAAAAGA
Found at i:37344591 original size:19 final size:19
Alignment explanation
Indices: 37344567--37344642 Score: 70
Period size: 19 Copynumber: 4.0 Consensus size: 19
37344557 AGTTCGGCCC
37344567 GAAAGAAGAAGAAGAAAAA
1 GAAAGAAGAAGAAGAAAAA
* *
37344586 GAAAGAAGAAAAAGAGAGAA
1 GAAAGAAGAAGAAGA-AAAA
37344606 GAAA-AAG-AGAAAGAAAAAA
1 GAAAGAAGAAG-AAG-AAAAA
37344625 GAGAAGAA-AA-AAGAAAAA
1 GA-AAGAAGAAGAAGAAAAA
37344643 AGGGAAAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 13
0.73 0.06 0.20
Matches are distributed among these distances:
18 6 0.13
19 28 0.60
20 10 0.21
21 3 0.06
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (19 bp):
GAAAGAAGAAGAAGAAAAA
Found at i:37344605 original size:26 final size:25
Alignment explanation
Indices: 37344567--37344642 Score: 102
Period size: 25 Copynumber: 3.0 Consensus size: 25
37344557 AGTTCGGCCC
37344567 GAAAGAAGA-AGAAGAAAAAGAAAGAA
1 GAAA-AAGAGAGAAGAAAAAGAAA-AA
*
37344593 GAAAAAGAGAGAAGAAAAAGAGAAA
1 GAAAAAGAGAGAAGAAAAAGAAAAA
37344618 GAAAAA-AGAGAAGAAAAAAGAAAAA
1 GAAAAAGAGAGAAG-AAAAAGAAAAA
37344643 AGGGAAAAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
24 7 0.15
25 22 0.48
26 17 0.37
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (25 bp):
GAAAAAGAGAGAAGAAAAAGAAAAA
Found at i:37344622 original size:24 final size:25
Alignment explanation
Indices: 37344567--37344640 Score: 100
Period size: 26 Copynumber: 3.0 Consensus size: 25
37344557 AGTTCGGCCC
*
37344567 GAAAGAAGA-AGAAGAAAAAGAAAGAA
1 GAAA-AAGAGAGAAGAAAAAGAGA-AA
37344593 GAAAAAGAGAGAAGAAAAAGAGAAA
1 GAAAAAGAGAGAAGAAAAAGAGAAA
37344618 GAAAAA-AGAGAAGAAAAA-AGAAA
1 GAAAAAGAGAGAAGAAAAAGAGAAA
37344641 AAAGGGAAAA
Statistics
Matches: 46, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
23 5 0.11
24 12 0.26
25 12 0.26
26 17 0.37
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (25 bp):
GAAAAAGAGAGAAGAAAAAGAGAAA
Found at i:37345014 original size:26 final size:25
Alignment explanation
Indices: 37344961--37345027 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 25
37344951 CCCAATCTGC
37344961 AGAAAAAAAAAGAGGAGAAAAAAGAAA
1 AGAAAAAAAAA-A-GAGAAAAAAGAAA
37344988 AGAAAAAGAAAAAGAGAAAATAA-AAA
1 AGAAAAA-AAAAAGAGAAAA-AAGAAA
*
37345014 ACAAACAAAAAAAG
1 AGAAA-AAAAAAAG
37345028 GCCTGAATTG
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
26 20 0.56
27 12 0.33
28 4 0.11
ACGTcount: A:0.79, C:0.03, G:0.16, T:0.01
Consensus pattern (25 bp):
AGAAAAAAAAAAGAGAAAAAAGAAA
Found at i:37345378 original size:21 final size:21
Alignment explanation
Indices: 37345340--37345379 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
37345330 AAAAATATTC
* * *
37345340 AAAAATTTTCGTGTTTTAAAA
1 AAAAATTCTCGGGCTTTAAAA
37345361 AAAAATTCTCGGGCTTTAA
1 AAAAATTCTCGGGCTTTAA
37345380 TGGAATCACA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (21 bp):
AAAAATTCTCGGGCTTTAAAA
Found at i:37345521 original size:19 final size:18
Alignment explanation
Indices: 37345493--37345719 Score: 121
Period size: 19 Copynumber: 12.2 Consensus size: 18
37345483 CTTAAAAAAT
37345493 AAAAAA-TTCGTGTTTCAA
1 AAAAAATTTCGTGTTTC-A
* *
37345511 AAAAAATTTCGAGTTTTTTTA
1 AAAAAATTTC--G-TGTTTCA
*
37345532 AAAAAACTTTC-TCGTGTCA
1 AAAAAA-TTTCGT-GTTTCA
*
37345551 AAAAAATTTCATGTTTTCAA
1 AAAAAATTTCGTG-TTTC-A
37345571 AAAAAATTCTCGTGTTT--
1 AAAAAATT-TCGTGTTTCA
* *
37345588 AAAAATTTTCGCGTTTTCA
1 AAAAAATTTCGTG-TTTCA
*
37345607 AAAAATTTTCGTGTTTC-
1 AAAAAATTTCGTGTTTCA
*
37345624 AAAAATTTTAGCGT-TTTCA
1 AAAAAATTT--CGTGTTTCA
*
37345643 AAAAATTTTCGTGTTTTC-
1 AAAAAATTTCGTG-TTTCA
*
37345661 AAAAAATTCTCATGTTTC-
1 AAAAAATT-TCGTGTTTCA
*
37345679 -ATAAATTTCGTGTTTTCA
1 AAAAAATTTCGTG-TTTCA
* *
37345697 AAAATTATTATCGTGTTACA
1 AAAA-AATT-TCGTGTTTCA
37345717 AAA
1 AAA
37345720 TTCTCTTGTT
Statistics
Matches: 168, Mismatches: 17, Indels: 46
0.73 0.07 0.20
Matches are distributed among these distances:
16 8 0.05
17 32 0.19
18 31 0.18
19 50 0.30
20 22 0.13
21 17 0.10
22 8 0.05
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (18 bp):
AAAAAATTTCGTGTTTCA
Found at i:37345582 original size:37 final size:37
Alignment explanation
Indices: 37345493--37345611 Score: 105
Period size: 37 Copynumber: 3.1 Consensus size: 37
37345483 CTTAAAAAAT
* * *
37345493 AAAAAATTCGT-GTTTCAAAAAAAATTTCGAGTTTTTTTAA
1 AAAAAATTC-TCGTGTC-AAAAAAATTTC-A-TGTTTTCAA
*
37345533 AAAAACTTTCTCGTGTCAAAAAAATTTCATGTTTTCAA
1 AAAAA-ATTCTCGTGTCAAAAAAATTTCATGTTTTCAA
** * **
37345571 AAAAAATTCTCGTGTTTAAAAATTTTCGCGTTTTCAA
1 AAAAAATTCTCGTGTCAAAAAAATTTCATGTTTTCAA
37345608 AAAA
1 AAAA
37345612 TTTTCGTGTT
Statistics
Matches: 67, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
37 30 0.45
38 12 0.18
39 1 0.01
40 17 0.25
41 7 0.10
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (37 bp):
AAAAAATTCTCGTGTCAAAAAAATTTCATGTTTTCAA
Found at i:37345592 original size:20 final size:20
Alignment explanation
Indices: 37345550--37345592 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
37345540 TTCTCGTGTC
*
37345550 AAAAAAATTTCATGTTTTCA
1 AAAAAAATTTCATGTTTTAA
*
37345570 AAAAAAATTCTCGTG-TTTAA
1 AAAAAAATT-TCATGTTTTAA
37345590 AAA
1 AAA
37345593 TTTTCGCGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.49, C:0.09, G:0.07, T:0.35
Consensus pattern (20 bp):
AAAAAAATTTCATGTTTTAA
Found at i:37345592 original size:36 final size:35
Alignment explanation
Indices: 37345552--37345702 Score: 148
Period size: 36 Copynumber: 4.2 Consensus size: 35
37345542 CTCGTGTCAA
* *
37345552 AAAAATTTCATGTTTTCAAAAAAAATTCTCGTGTTT-
1 AAAAATTTCACGTTTTC--AAAAAATTTTCGTGTTTC
*
37345588 AAAAATTTTCGCGTTTTCAAAAAATTTTCGTGTTTC
1 AAAAA-TTTCACGTTTTCAAAAAATTTTCGTGTTTC
*
37345624 AAAAATTTTAGCGTTTTCAAAAAATTTTCGTGTTTTC
1 AAAAATTTCA-CGTTTTCAAAAAATTTTCGTG-TTTC
* *
37345661 AAAAAATTCTCATG-TTTC-ATAAA-TTTCGTGTTTTC
1 -AAAAATT-TCACGTTTTCAAAAAATTTTCGTG-TTTC
37345696 AAAAATT
1 AAAAATT
37345703 ATTATCGTGT
Statistics
Matches: 101, Mismatches: 8, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
34 7 0.07
35 31 0.31
36 35 0.35
37 18 0.18
38 8 0.08
39 2 0.02
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (35 bp):
AAAAATTTCACGTTTTCAAAAAATTTTCGTGTTTC
Found at i:37345624 original size:55 final size:55
Alignment explanation
Indices: 37345548--37345679 Score: 151
Period size: 55 Copynumber: 2.4 Consensus size: 55
37345538 CTTTCTCGTG
* **
37345548 TCAAAAAAATTTCATGTTTTCAAAAAAAATTCTCGTGTTT-AAAAATTTTCGCGTTT
1 TCAAAAAATTTTCATG-TTTCAAAAAAAATTAGCGT-TTTAAAAAATTTTCGCGTTT
* ** *
37345604 TCAAAAAATTTTCGTGTTTC-AAAAATTTTAGCGTTTTCAAAAAATTTTCGTGTTT
1 TCAAAAAATTTTCATGTTTCAAAAAAAATTAGCGTTTT-AAAAAATTTTCGCGTTT
*
37345659 TCAAAAAATTCTCATGTTTCA
1 TCAAAAAATTTTCATGTTTCA
37345680 TAAATTTCGT
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
53 3 0.05
54 10 0.16
55 37 0.58
56 14 0.22
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.42
Consensus pattern (55 bp):
TCAAAAAATTTTCATGTTTCAAAAAAAATTAGCGTTTTAAAAAATTTTCGCGTTT
Found at i:37345641 original size:18 final size:19
Alignment explanation
Indices: 37345548--37345668 Score: 124
Period size: 19 Copynumber: 6.5 Consensus size: 19
37345538 CTTTCTCGTG
* **
37345548 TCAAAAAAATTTCATGTTT
1 TCAAAAAATTTTCGCGTTT
** *
37345567 TCAAAAAAAATTCTCGTGTT
1 TCAAAAAATTTTCGCGT-TT
37345587 T--AAAAATTTTCGCGTTT
1 TCAAAAAATTTTCGCGTTT
*
37345604 TCAAAAAATTTTCGTG-TT
1 TCAAAAAATTTTCGCGTTT
*
37345622 TC-AAAAATTTTAGCGTTT
1 TCAAAAAATTTTCGCGTTT
*
37345640 TCAAAAAATTTTCGTGTTT
1 TCAAAAAATTTTCGCGTTT
37345659 TCAAAAAATT
1 TCAAAAAATT
37345669 CTCATGTTTC
Statistics
Matches: 86, Mismatches: 11, Indels: 10
0.80 0.10 0.09
Matches are distributed among these distances:
17 14 0.16
18 19 0.22
19 50 0.58
20 3 0.03
ACGTcount: A:0.37, C:0.12, G:0.09, T:0.42
Consensus pattern (19 bp):
TCAAAAAATTTTCGCGTTT
Found at i:37345685 original size:55 final size:54
Alignment explanation
Indices: 37345588--37345700 Score: 163
Period size: 55 Copynumber: 2.1 Consensus size: 54
37345578 TCTCGTGTTT
* *
37345588 AAAAATTTTCGCGTTTTCAAAAAATTTTCGTGTTTCAAAAATTTTAGCGTTTTCA
1 AAAAATTTTCGCGTTTTCAAAAAATTCTCATGTTTCAAAAA-TTTAGCGTTTTCA
* * * *
37345643 AAAAATTTTCGTGTTTTCAAAAAATTCTCATGTTTCATAAATTTCGTGTTTTCA
1 AAAAATTTTCGCGTTTTCAAAAAATTCTCATGTTTCAAAAATTTAGCGTTTTCA
37345697 AAAA
1 AAAA
37345701 TTATTATCGT
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
54 15 0.29
55 37 0.71
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.43
Consensus pattern (54 bp):
AAAAATTTTCGCGTTTTCAAAAAATTCTCATGTTTCAAAAATTTAGCGTTTTCA
Found at i:37345721 original size:36 final size:37
Alignment explanation
Indices: 37345608--37345731 Score: 123
Period size: 37 Copynumber: 3.4 Consensus size: 37
37345598 GCGTTTTCAA
* * *
37345608 AAAATTTTCGTG-TTTCAAAAATT-TTAGCGTTTTCAA
1 AAAATTTTCGTGTTTTCAAAAATTATTATCGTGTT-AC
* * *
37345644 AAAATTTTCGTGTTTTCAAAAA--ATTCTCATGTTTC
1 AAAATTTTCGTGTTTTCAAAAATTATTATCGTGTTAC
37345679 ATAAA-TTTCGTGTTTTCAAAAATTATTATCGTGTTAC
1 A-AAATTTTCGTGTTTTCAAAAATTATTATCGTGTTAC
* *
37345716 AAAATTCTCTTGTTTT
1 AAAATTTTCGTGTTTT
37345732 TTTAAAAATC
Statistics
Matches: 71, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
35 18 0.25
36 24 0.34
37 29 0.41
ACGTcount: A:0.31, C:0.12, G:0.10, T:0.47
Consensus pattern (37 bp):
AAAATTTTCGTGTTTTCAAAAATTATTATCGTGTTAC
Found at i:37345751 original size:72 final size:71
Alignment explanation
Indices: 37345571--37345731 Score: 168
Period size: 72 Copynumber: 2.3 Consensus size: 71
37345561 ATGTTTTCAA
* ** *
37345571 AAAAAATTCTCGTG-TTT--AAAAATTTTCGCGTTTTCAAAAAATTTTCGTGTTTCAAAAATTTT
1 AAAAAATTCTCGTGTTTTCAAAAAATTCTCATG-TTTC-ATAAA-TTTCGTGTTTCAAAAATTTT
*
37345633 AGCGTTTTC
63 AGCGTGTTC
*
37345642 AAAAAATTTTCGTGTTTTCAAAAAATTCTCATGTTTCATAAATTTCGTGTTTTCAAAAATTATTA
1 AAAAAATTCTCGTGTTTTCAAAAAATTCTCATGTTTCATAAATTTCGTG-TTTCAAAAATT-TTA
*
37345707 TCGTGTT-
64 GCGTGTTC
* *
37345714 ACAAAATTCTCTTGTTTT
1 AAAAAATTCTCGTGTTTT
37345732 TTTAAAAATC
Statistics
Matches: 75, Mismatches: 10, Indels: 9
0.80 0.11 0.10
Matches are distributed among these distances:
71 20 0.27
72 33 0.44
73 12 0.16
74 10 0.13
ACGTcount: A:0.32, C:0.12, G:0.10, T:0.45
Consensus pattern (71 bp):
AAAAAATTCTCGTGTTTTCAAAAAATTCTCATGTTTCATAAATTTCGTGTTTCAAAAATTTTAGC
GTGTTC
Found at i:37349701 original size:445 final size:445
Alignment explanation
Indices: 37348865--37349755 Score: 1665
Period size: 445 Copynumber: 2.0 Consensus size: 445
37348855 TTGTAAAGCT
37348865 TCAAAAGTTGACTCTCACATAAATATACACATAACATAGTATTCATCATTAACATAAATGTATGG
1 TCAAAAGTTGACTCTCACATAAATATACACATAACATAGTATTCATCATTAACATAAATGTATGG
* *
37348930 CATGTATTTCTATACACTTTACACATCTCATTCATTCCGAGAATCGACTAAACTGAATCTCTGAT
66 CATGTATTTCTATACACTTTACACATATCATTCATTCCGAGAATCGACTAAACCGAATCTCTGAT
37348995 ACCACTAAATGTAACACTCTTAACCCGTATTCATCGTCAAAACAGGATTACGATGCATTACCAAA
131 ACCACTAAATGTAACACTCTTAACCCGTATTCATCGTCAAAACAGGATTACGATGCATTACCAAA
* *
37349060 GATTTACAGAACATTTTCAGATAAGTCAAGTTAATTACTATTTATTTTTCAAAACTATTGATAAT
196 GATTTACAAAACATTTTCAGATAAGTCAAGTTAATTACTATTTATTTTTCAAAACTAGTGATAAT
37349125 GTCCTTTATATGGGCCCTCACAACCCAAAACATGCTTTAGAAATAAATCGGGACTAAATCTCATT
261 GTCCTTTATATGGGCCCTCACAACCCAAAACATGCTTTAGAAATAAATCGGGACTAAATCTCATT
37349190 GGGAATTTTTCGTAAAATCTCAAAATTTTTCTCACAATTGAGAGTCACACGCCCGTGTGGTATGG
326 GGGAATTTTTCGTAAAATCTCAAAATTTTTCTCACAATTGAGAGTCACACGCCCGTGTGGTATGG
*
37349255 GACATGCCCGTGTGGTCAGGCCGTGTGAGTTCACACGCTCGTGTCCCTACTCGTA
391 GACATGCCCGTGTGGTCAGGCCGTGTGAGTTCACACACTCGTGTCCCTACTCGTA
*
37349310 TCAAAATTTGACTCTCACATAAATATACACATAACATAGTATTCATCATTAACATAAATGTATGG
1 TCAAAAGTTGACTCTCACATAAATATACACATAACATAGTATTCATCATTAACATAAATGTATGG
* *
37349375 CATGTATTTCTATACACTTTACACATATCATTCGTTCCGAGAATCGGCTAAACCGAATCTCTGAT
66 CATGTATTTCTATACACTTTACACATATCATTCATTCCGAGAATCGACTAAACCGAATCTCTGAT
* *
37349440 ACCACTAAATGTAACACTCTTAACCCGTATTCATCGTCGAAACAGGGTTACGATGCATTACCAAA
131 ACCACTAAATGTAACACTCTTAACCCGTATTCATCGTCAAAACAGGATTACGATGCATTACCAAA
37349505 GATTTACAAAACATTTTCAGATAAGTCAAGTTAATTACTATTTATTTTTCAAAACTAGTGATAAT
196 GATTTACAAAACATTTTCAGATAAGTCAAGTTAATTACTATTTATTTTTCAAAACTAGTGATAAT
37349570 GTCCTTTATATGGGCCCTCACAACCCAAAACATGCTTTAGAAATAAATCGGGACTAAATCTCATT
261 GTCCTTTATATGGGCCCTCACAACCCAAAACATGCTTTAGAAATAAATCGGGACTAAATCTCATT
*
37349635 GGGAATTTTTCGTAAAATCTTAAAATTTTTCTCACAATTGAGAGTCACACGCCCGTGTGGTATGG
326 GGGAATTTTTCGTAAAATCTCAAAATTTTTCTCACAATTGAGAGTCACACGCCCGTGTGGTATGG
* *
37349700 GACATGCTCGTGTGGTCAGGCCGTGTGGGTTCACACACTCGTGTCCCTACTCGTA
391 GACATGCCCGTGTGGTCAGGCCGTGTGAGTTCACACACTCGTGTCCCTACTCGTA
37349755 T
1 T
37349756 AACTTTCTAA
Statistics
Matches: 433, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
445 433 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (445 bp):
TCAAAAGTTGACTCTCACATAAATATACACATAACATAGTATTCATCATTAACATAAATGTATGG
CATGTATTTCTATACACTTTACACATATCATTCATTCCGAGAATCGACTAAACCGAATCTCTGAT
ACCACTAAATGTAACACTCTTAACCCGTATTCATCGTCAAAACAGGATTACGATGCATTACCAAA
GATTTACAAAACATTTTCAGATAAGTCAAGTTAATTACTATTTATTTTTCAAAACTAGTGATAAT
GTCCTTTATATGGGCCCTCACAACCCAAAACATGCTTTAGAAATAAATCGGGACTAAATCTCATT
GGGAATTTTTCGTAAAATCTCAAAATTTTTCTCACAATTGAGAGTCACACGCCCGTGTGGTATGG
GACATGCCCGTGTGGTCAGGCCGTGTGAGTTCACACACTCGTGTCCCTACTCGTA
Found at i:37350743 original size:47 final size:48
Alignment explanation
Indices: 37350648--37350830 Score: 140
Period size: 47 Copynumber: 3.9 Consensus size: 48
37350638 TATAACTAGT
* * * * *
37350648 TCTTGCACATAATCACATATCACACACCGAAGCCATAACCCAGCTATGG
1 TCTTACACAGAATCACATAT-TCACACCGATGCCATAACCCAGATATGG
*
37350697 TCTTACACAG-ATCACATATTCACACCGATGCCATATCCC-GAATATGG
1 TCTTACACAGAATCACATATTCACACCGATGCCATAACCCAG-ATATGG
* * * * * ** *
37350744 TCTTATACGGAAGCACATA-TCACACTGATGCTATAGTCCAGCTATGG
1 TCTTACACAGAATCACATATTCACACCGATGCCATAACCCAGATATGG
* ** * * *
37350791 TCTTATATGGAAGCACATA-TCACATCGATGCCATAGCCCA
1 TCTTACACAGAATCACATATTCACACCGATGCCATAACCCA
37350831 ACTATTGTCT
Statistics
Matches: 112, Mismatches: 19, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
46 1 0.01
47 86 0.77
48 17 0.15
49 8 0.07
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (48 bp):
TCTTACACAGAATCACATATTCACACCGATGCCATAACCCAGATATGG
Found at i:37350787 original size:94 final size:94
Alignment explanation
Indices: 37350687--37350861 Score: 246
Period size: 94 Copynumber: 1.9 Consensus size: 94
37350677 AAGCCATAAC
* *
37350687 CCAGCTATGGTCTTACACAG-ATCACATATTCACACCGATGCCATATCCCGAA-TATGGTCTTAT
1 CCAGCTATGGTCTTACACAGAAGCACATA-TCACACCGATGCCATAGCCC-AACTATGGTCTTAT
37350750 ACGGAAGCACATATCACACTGATGCTATAGT
64 ACGGAAGCACATATCACACTGATGCTATAGT
* ** * * *
37350781 CCAGCTATGGTCTTATATGGAAGCACATATCACATCGATGCCATAGCCCAACTATTGTCTTATAT
1 CCAGCTATGGTCTTACACAGAAGCACATATCACACCGATGCCATAGCCCAACTATGGTCTTATAC
37350846 GGAAGCACATATCACA
66 GGAAGCACATATCACA
37350862 TATTTCCACG
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
93 2 0.03
94 62 0.87
95 7 0.10
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (94 bp):
CCAGCTATGGTCTTACACAGAAGCACATATCACACCGATGCCATAGCCCAACTATGGTCTTATAC
GGAAGCACATATCACACTGATGCTATAGT
Found at i:37350841 original size:47 final size:47
Alignment explanation
Indices: 37350709--37350862 Score: 204
Period size: 47 Copynumber: 3.3 Consensus size: 47
37350699 TTACACAGAT
* * *
37350709 CACATATTCACACCGATGCCATATCCCGAA-TATGGTCTTATACGGAAG
1 CACATA-TCACATCGATGCCATAGCCC-AACTATGGTCTTATATGGAAG
* * *
37350757 CACATATCACA-CTGATGCTATAGTCCAGCTATGGTCTTATATGGAAG
1 CACATATCACATC-GATGCCATAGCCCAACTATGGTCTTATATGGAAG
*
37350804 CACATATCACATCGATGCCATAGCCCAACTATTGTCTTATATGGAAG
1 CACATATCACATCGATGCCATAGCCCAACTATGGTCTTATATGGAAG
37350851 CACATATCACAT
1 CACATATCACAT
37350863 ATTTCCACGG
Statistics
Matches: 94, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
46 2 0.02
47 85 0.90
48 7 0.07
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (47 bp):
CACATATCACATCGATGCCATAGCCCAACTATGGTCTTATATGGAAG
Found at i:37354932 original size:19 final size:19
Alignment explanation
Indices: 37354895--37354933 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
37354885 TATGCCCTGT
37354895 TTACATGCATGACATTATG
1 TTACATGCATGACATTATG
*
37354914 TTACA-GCATGTCATATATG
1 TTACATGCATGACAT-TATG
37354933 T
1 T
37354934 ATATTGTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (19 bp):
TTACATGCATGACATTATG
Found at i:37359242 original size:11 final size:13
Alignment explanation
Indices: 37359222--37359253 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
37359212 AATAAATTAA
37359222 TAAAATATCAT-T
1 TAAAATATCATAT
37359234 TAAAA-ATCATAT
1 TAAAATATCATAT
37359246 TAAAATAT
1 TAAAATAT
37359254 TAATAAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.28
12 11 0.61
13 2 0.11
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (13 bp):
TAAAATATCATAT
Found at i:37359969 original size:42 final size:42
Alignment explanation
Indices: 37359858--37359969 Score: 118
Period size: 42 Copynumber: 2.7 Consensus size: 42
37359848 GAACAAAGGG
* * *
37359858 ACACACGGCCGTGTTG-CACACTGTGTAACTCTTTGAGTTGCC
1 ACACACGACCGTG-TGCCAGACCGTGTAACTCTTTGAGTTGCC
* * *
37359900 ATACACGACCGTGTGCCAGACCTTGTAACTTTTTGAGTTGCC
1 ACACACGACCGTGTGCCAGACCGTGTAACTCTTTGAGTTGCC
* * * *
37359942 ACGCACGGCCGTGTGCTAGGCCGTGTAA
1 ACACACGACCGTGTGCCAGACCGTGTAA
37359970 TTCATTGACT
Statistics
Matches: 57, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
41 2 0.04
42 55 0.96
ACGTcount: A:0.20, C:0.28, G:0.26, T:0.27
Consensus pattern (42 bp):
ACACACGACCGTGTGCCAGACCGTGTAACTCTTTGAGTTGCC
Found at i:37362100 original size:22 final size:22
Alignment explanation
Indices: 37362063--37362162 Score: 98
Period size: 22 Copynumber: 4.5 Consensus size: 22
37362053 GCGCTTTGGC
*
37362063 GCTTACTGTT-TCGCACTTTGGT
1 GCTTACTGTTCT-GCACTTCGGT
*
37362085 GCTTA-TCGTTCTGCACTTCAGT
1 GCTTACT-GTTCTGCACTTCGGT
* *
37362107 GCCTACTGTTTTGCACTTCGGT
1 GCTTACTGTTCTGCACTTCGGT
*
37362129 GCTTAGTGATT-TGCACTTCGGT
1 GCTTACTG-TTCTGCACTTCGGT
*
37362151 GCCTACTGTTCT
1 GCTTACTGTTCT
37362163 ATTAGTGCAC
Statistics
Matches: 64, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
21 3 0.05
22 57 0.89
23 4 0.06
ACGTcount: A:0.11, C:0.25, G:0.22, T:0.42
Consensus pattern (22 bp):
GCTTACTGTTCTGCACTTCGGT
Found at i:37362114 original size:44 final size:44
Alignment explanation
Indices: 37362066--37362160 Score: 131
Period size: 44 Copynumber: 2.2 Consensus size: 44
37362056 CTTTGGCGCT
*
37362066 TACTGTTTCGCACTTTGGTGCTTA-TCG-TTCTGCACTTCAGTGCC
1 TACTGTTTCGCACTTCGGTGCTTAGT-GATT-TGCACTTCAGTGCC
* *
37362110 TACTGTTTTGCACTTCGGTGCTTAGTGATTTGCACTTCGGTGCC
1 TACTGTTTCGCACTTCGGTGCTTAGTGATTTGCACTTCAGTGCC
37362154 TACTGTT
1 TACTGTT
37362161 CTATTAGTGC
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
44 43 0.93
45 3 0.07
ACGTcount: A:0.12, C:0.24, G:0.22, T:0.42
Consensus pattern (44 bp):
TACTGTTTCGCACTTCGGTGCTTAGTGATTTGCACTTCAGTGCC
Found at i:37362934 original size:19 final size:19
Alignment explanation
Indices: 37362897--37362934 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
37362887 AGTAATAAGT
*
37362897 TTTAATTAGATGAATTTAG
1 TTTAATTAGATGAAATTAG
37362916 TTTAATTAAGA-GAAATTAG
1 TTTAATT-AGATGAAATTAG
37362935 GAAAAAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (19 bp):
TTTAATTAGATGAAATTAG
Found at i:37363089 original size:5 final size:5
Alignment explanation
Indices: 37363079--37363115 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
37363069 TATGTTTTAA
37363079 ATATT ATATT ATATT ATATT ATATT ATATT ATATT AT
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT AT
37363116 TATGTAAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATATT
Found at i:37376058 original size:18 final size:17
Alignment explanation
Indices: 37376025--37376063 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
37376015 TTGTATAAAT
37376025 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
37376043 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
37376060 TGTG
1 TGTG
37376064 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:37378312 original size:41 final size:41
Alignment explanation
Indices: 37378255--37378340 Score: 145
Period size: 41 Copynumber: 2.1 Consensus size: 41
37378245 CATTCAAACC
37378255 GTTAGTGAATTTCCTGACGTGTTTCCCAAAGAGTTGTCAAG
1 GTTAGTGAATTTCCTGACGTGTTTCCCAAAGAGTTGTCAAG
* * *
37378296 GTTAGTGAATTTCCTGATGTGTTTCCCGAAGAGTTGTCAGG
1 GTTAGTGAATTTCCTGACGTGTTTCCCAAAGAGTTGTCAAG
37378337 GTTA
1 GTTA
37378341 CCTACAGATC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.22, C:0.15, G:0.27, T:0.36
Consensus pattern (41 bp):
GTTAGTGAATTTCCTGACGTGTTTCCCAAAGAGTTGTCAAG
Found at i:37381057 original size:42 final size:41
Alignment explanation
Indices: 37380996--37381107 Score: 116
Period size: 44 Copynumber: 2.6 Consensus size: 41
37380986 CGATGCCTCT
* * *
37380996 GTCCCAGACAGGGTTTTACACAAAATCAAATAAGATGCTGAC
1 GTCCCAGACATGGTCTTACACAAAATCAAAT-AGATGCCGAC
* * * *
37381038 GTCCTAGATATGGTCTTACACTTAAATCTCAAATCGATGCCGAC
1 GTCCCAGACATGGTCTTACAC--AAA-ATCAAATAGATGCCGAC
*
37381082 GTCCCAGACGTGGTCTTACACAAAAT
1 GTCCCAGACATGGTCTTACACAAAAT
37381108 TACATATTGG
Statistics
Matches: 56, Mismatches: 11, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
41 1 0.02
42 20 0.36
44 29 0.52
45 6 0.11
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (41 bp):
GTCCCAGACATGGTCTTACACAAAATCAAATAGATGCCGAC
Found at i:37381645 original size:8 final size:9
Alignment explanation
Indices: 37381624--37381665 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
37381614 CTAAATTCAA
37381624 AAATTACTC
1 AAATTACTC
37381633 AAATTACTC
1 AAATTACTC
* *
37381642 AATTTAGCCC
1 AAATTA-CTC
37381652 AAATTACTC
1 AAATTACTC
37381661 AAATT
1 AAATT
37381666 TATCAAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
9 21 0.75
10 7 0.25
ACGTcount: A:0.43, C:0.21, G:0.02, T:0.33
Consensus pattern (9 bp):
AAATTACTC
Found at i:37381675 original size:20 final size:19
Alignment explanation
Indices: 37381633--37381676 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
37381623 AAAATTACTC
**
37381633 AAATTACTCAATTTAGCCC
1 AAATTACTCAATTTAGCAA
*
37381652 AAATTACTCAAATTTATCAA
1 AAATTACTC-AATTTAGCAA
37381672 AAATT
1 AAATT
37381677 CAAATACAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.45, C:0.18, G:0.02, T:0.34
Consensus pattern (19 bp):
AAATTACTCAATTTAGCAA
Found at i:37388527 original size:13 final size:13
Alignment explanation
Indices: 37388509--37388533 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37388499 CTAGGATCTA
37388509 AAACATAAGCAAC
1 AAACATAAGCAAC
37388522 AAACATAAGCAA
1 AAACATAAGCAA
37388534 ATTCATCTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.20, G:0.08, T:0.08
Consensus pattern (13 bp):
AAACATAAGCAAC
Found at i:37391991 original size:48 final size:48
Alignment explanation
Indices: 37391920--37392039 Score: 231
Period size: 48 Copynumber: 2.5 Consensus size: 48
37391910 GATTCGACTA
*
37391920 AGATTGAGATACGATTTGTGTTAAGTGAAAGTCGGTTGCTGCCTGCTG
1 AGATTGAGATACGATTTGTGTTAAGTGAAAATCGGTTGCTGCCTGCTG
37391968 AGATTGAGATACGATTTGTGTTAAGTGAAAATCGGTTGCTGCCTGCTG
1 AGATTGAGATACGATTTGTGTTAAGTGAAAATCGGTTGCTGCCTGCTG
37392016 AGATTGAGATACGATTTGTGTTAA
1 AGATTGAGATACGATTTGTGTTAA
37392040 TAAAACCATC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 71 1.00
ACGTcount: A:0.26, C:0.11, G:0.29, T:0.34
Consensus pattern (48 bp):
AGATTGAGATACGATTTGTGTTAAGTGAAAATCGGTTGCTGCCTGCTG
Found at i:37392405 original size:20 final size:19
Alignment explanation
Indices: 37392357--37392406 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
37392347 TAACAGAAAT
*
37392357 TTATCCGTATCAACAGTAA
1 TTATCCATATCAACAGTAA
* *
37392376 CTTATACATATCAATAGTAA
1 -TTATCCATATCAACAGTAA
37392396 TTCATCCATAT
1 TT-ATCCATAT
37392407 AATTACATAG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 2 0.08
20 23 0.92
ACGTcount: A:0.38, C:0.20, G:0.06, T:0.36
Consensus pattern (19 bp):
TTATCCATATCAACAGTAA
Found at i:37392609 original size:23 final size:24
Alignment explanation
Indices: 37392555--37392646 Score: 107
Period size: 26 Copynumber: 3.7 Consensus size: 24
37392545 GAGCCATGAT
*
37392555 CGGTAAGCTCATTCCGAGCTGATGAA
1 CGGTAAGCTCA-TACGAGCTGAT-AA
37392581 CGGTAAGCTC-TATCGAGCTGA-AA
1 CGGTAAGCTCATA-CGAGCTGATAA
*
37392604 CGGTAAGCTCATAAGAGCTGATATA
1 CGGTAAGCTCATACGAGCTGATA-A
37392629 TCGGTAAGCTCATACGAG
1 -CGGTAAGCTCATACGAG
37392647 TTGTGTTAAG
Statistics
Matches: 58, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
23 19 0.33
24 4 0.07
25 9 0.16
26 26 0.45
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (24 bp):
CGGTAAGCTCATACGAGCTGATAA
Found at i:37398659 original size:27 final size:26
Alignment explanation
Indices: 37398601--37398666 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 26
37398591 TATAACGGGT
*
37398601 AGTTCACAAA-AGCCATTTTTCGAGA
1 AGTTCACAAAGAACCATTTTTCGAGA
37398626 AGTTCACAAAGAACC-TTTTTAACGAGA
1 AGTTCACAAAGAACCATTTTT--CGAGA
37398653 AGTTCACAAAGAAC
1 AGTTCACAAAGAAC
37398667 TATATCGAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
25 15 0.41
26 3 0.08
27 19 0.51
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (26 bp):
AGTTCACAAAGAACCATTTTTCGAGA
Found at i:37405237 original size:12 final size:12
Alignment explanation
Indices: 37405220--37405244 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37405210 AGTTCCTTAT
37405220 CTTCCCCTTCTC
1 CTTCCCCTTCTC
37405232 CTTCCCCTTCTC
1 CTTCCCCTTCTC
37405244 C
1 C
37405245 CTTGTTGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (12 bp):
CTTCCCCTTCTC
Found at i:37405790 original size:17 final size:16
Alignment explanation
Indices: 37405762--37405798 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
37405752 CTTAGTAAAT
37405762 AGAAAAGAAAAAAAAA
1 AGAAAAGAAAAAAAAA
*
37405778 AGAAAAGGAAAAAGAAA
1 AGAAAA-GAAAAAAAAA
37405795 AGAA
1 AGAA
37405799 GATGACTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (16 bp):
AGAAAAGAAAAAAAAA
Found at i:37405791 original size:12 final size:12
Alignment explanation
Indices: 37405764--37405798 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
37405754 TAGTAAATAG
37405764 AAAAGAAAA-AA
1 AAAAGAAAAGAA
*
37405775 AAAAGAAAAGGA
1 AAAAGAAAAGAA
37405787 AAAAGAAAAGAA
1 AAAAGAAAAGAA
37405799 GATGACTACA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (12 bp):
AAAAGAAAAGAA
Found at i:37408837 original size:13 final size:13
Alignment explanation
Indices: 37408819--37408852 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
37408809 ACCTAGCCCA
37408819 AACCCAATTACCC
1 AACCCAATTACCC
37408832 AACCCAATTACCC
1 AACCCAATTACCC
37408845 AACCCAAT
1 AACCCAAT
37408853 AAAACTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.41, C:0.44, G:0.00, T:0.15
Consensus pattern (13 bp):
AACCCAATTACCC
Found at i:37409014 original size:20 final size:21
Alignment explanation
Indices: 37408985--37409027 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
37408975 AAATAAAAAA
*
37408985 TTCGGGTAATTCGGGT-ATTT
1 TTCGGGTAATTCAGGTAATTT
*
37409005 TTCGGTTAATTCAGGTAATTT
1 TTCGGGTAATTCAGGTAATTT
37409026 TT
1 TT
37409028 AACCAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.19, C:0.09, G:0.23, T:0.49
Consensus pattern (21 bp):
TTCGGGTAATTCAGGTAATTT
Found at i:37414451 original size:4 final size:4
Alignment explanation
Indices: 37414442--37414487 Score: 92
Period size: 4 Copynumber: 11.5 Consensus size: 4
37414432 TTCTAGAACA
37414442 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TA
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TA
37414488 ATGAATTCCG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 42 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:37414826 original size:20 final size:20
Alignment explanation
Indices: 37414801--37414868 Score: 84
Period size: 20 Copynumber: 3.4 Consensus size: 20
37414791 ATGTATGAAC
*
37414801 GTATGTATGACAACATATAT
1 GTATGTATGACAACATCTAT
* *
37414821 GTATGTATGA-AACTCTCTAC
1 GTATGTATGACAAC-ATCTAT
*
37414841 GTATGTATGACACCATCTAT
1 GTATGTATGACAACATCTAT
37414861 GTATGTAT
1 GTATGTAT
37414869 TGAATTCCAC
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
19 3 0.08
20 35 0.88
21 2 0.05
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (20 bp):
GTATGTATGACAACATCTAT
Found at i:37415009 original size:24 final size:24
Alignment explanation
Indices: 37414974--37415028 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
37414964 TACTCAGAGC
* *
37414974 ATGTATGTATGACACC-ATCTATAT
1 ATGTATGAATGACACCGAT-TACAT
37414998 ATGTATGAATGACACCGATTACAT
1 ATGTATGAATGACACCGATTACAT
37415022 ATGTATG
1 ATGTATG
37415029 TATCGAATTC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 26 0.93
25 2 0.07
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.35
Consensus pattern (24 bp):
ATGTATGAATGACACCGATTACAT
Found at i:37418585 original size:13 final size:14
Alignment explanation
Indices: 37418567--37418595 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
37418557 TTATTCAATT
37418567 TTAATA-AAAAATA
1 TTAATATAAAAATA
37418580 TTAATATAAAAATA
1 TTAATATAAAAATA
37418594 TT
1 TT
37418596 TTTTTAGTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
TTAATATAAAAATA
Found at i:37421431 original size:6 final size:6
Alignment explanation
Indices: 37421420--37421483 Score: 101
Period size: 6 Copynumber: 10.5 Consensus size: 6
37421410 AGTTCCTTAT
*
37421420 CTTCCC CTTCCC CTTCCA CTTCCC CTTCCC CTTCCC CTTCCC CTTCCC
1 CTTCCC CTTCCC CTTCCC CTTCCC CTTCCC CTTCCC CTTCCC CTTCCC
*
37421468 CTTCTC CTTCTCC CTT
1 CTTCCC CTTC-CC CTT
37421484 GTTGCATTCA
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
6 49 0.92
7 4 0.08
ACGTcount: A:0.02, C:0.61, G:0.00, T:0.38
Consensus pattern (6 bp):
CTTCCC
Found at i:37422020 original size:6 final size:6
Alignment explanation
Indices: 37422006--37422037 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
37421996 TAGTAAATAG
37422006 AAAAGA AAAA-A AAAAGA AAAAGA AAAAGA AAA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAA
37422038 GAAGATGACT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:37422022 original size:11 final size:12
Alignment explanation
Indices: 37422006--37422037 Score: 57
Period size: 11 Copynumber: 2.8 Consensus size: 12
37421996 TAGTAAATAG
37422006 AAAAGAAAAA-A
1 AAAAGAAAAAGA
37422017 AAAAGAAAAAGA
1 AAAAGAAAAAGA
37422029 AAAAGAAAA
1 AAAAGAAAA
37422038 GAAGATGACT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (12 bp):
AAAAGAAAAAGA
Found at i:37422028 original size:17 final size:17
Alignment explanation
Indices: 37422006--37422040 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
37421996 TAGTAAATAG
37422006 AAAAGAAAAAAAAAAGA
1 AAAAGAAAAAAAAAAGA
*
37422023 AAAAGAAAAAGAAAAGA
1 AAAAGAAAAAAAAAAGA
37422040 A
1 A
37422041 GATGACTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (17 bp):
AAAAGAAAAAAAAAAGA
Found at i:37423246 original size:35 final size:34
Alignment explanation
Indices: 37423181--37423261 Score: 81
Period size: 35 Copynumber: 2.3 Consensus size: 34
37423171 GAAAATAAGA
* ** * *
37423181 TAAAAATATAAAAATATGTATTTGTGTATATATT
1 TAAAAATATAAAAATACGTAAGTATATATATATT
**
37423215 TAAAAATAATAAAAATACGTAAGTATATATATACA
1 TAAAAAT-ATAAAAATACGTAAGTATATATATATT
37423250 TATAAAATATAA
1 TA-AAAATATAA
37423262 GGTATACAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
34 7 0.18
35 26 0.68
36 5 0.13
ACGTcount: A:0.56, C:0.02, G:0.06, T:0.36
Consensus pattern (34 bp):
TAAAAATATAAAAATACGTAAGTATATATATATT
Found at i:37423502 original size:23 final size:21
Alignment explanation
Indices: 37423454--37423504 Score: 59
Period size: 20 Copynumber: 2.3 Consensus size: 21
37423444 GTATATAAAC
*
37423454 GTATACTAAAAAACATGTGCAT
1 GTATA-TAAAAAACATGCGCAT
37423476 -TATATAAAAAACCTATGCGCAT
1 GTATATAAAAAA-C-ATGCGCAT
37423498 GTATATA
1 GTATATA
37423505 CAGTAGTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 7 0.28
21 5 0.20
22 7 0.28
23 6 0.24
ACGTcount: A:0.45, C:0.14, G:0.12, T:0.29
Consensus pattern (21 bp):
GTATATAAAAAACATGCGCAT
Found at i:37426319 original size:85 final size:85
Alignment explanation
Indices: 37426219--37426390 Score: 335
Period size: 85 Copynumber: 2.0 Consensus size: 85
37426209 AATATTGTAT
37426219 TTAGTGGAAATTTTACATTTTAATTATATAGATGTTCTAAAAAATTCACATCGTAACACATGCAA
1 TTAGTGGAAATTTTACATTTTAATTATATAGATGTTCTAAAAAATTCACATCGTAACACATGCAA
37426284 AATAATAACAAATTCAAAAG
66 AATAATAACAAATTCAAAAG
*
37426304 TTAGTGGAAATTTTACATTTTAATTATATAGATGTTCTAAAAAATTCACATGGTAACACATGCAA
1 TTAGTGGAAATTTTACATTTTAATTATATAGATGTTCTAAAAAATTCACATCGTAACACATGCAA
37426369 AATAATAACAAATTCAAAAG
66 AATAATAACAAATTCAAAAG
37426389 TT
1 TT
37426391 TTAATTATAT
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 86 1.00
ACGTcount: A:0.45, C:0.11, G:0.10, T:0.34
Consensus pattern (85 bp):
TTAGTGGAAATTTTACATTTTAATTATATAGATGTTCTAAAAAATTCACATCGTAACACATGCAA
AATAATAACAAATTCAAAAG
Found at i:37430470 original size:20 final size:20
Alignment explanation
Indices: 37430442--37430488 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
37430432 GGCCTGCCGC
* *
37430442 CGCCGCCGCCAACGTCACGT
1 CGCCACCGCCAACATCACGT
37430462 CGCCACCGCCAACATCACGT
1 CGCCACCGCCAACATCACGT
37430482 CGACCAC
1 CG-CCAC
37430489 ACCACTTGCG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.21, C:0.51, G:0.19, T:0.09
Consensus pattern (20 bp):
CGCCACCGCCAACATCACGT
Found at i:37430726 original size:22 final size:21
Alignment explanation
Indices: 37430701--37430750 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
37430691 TTCAATCCAT
* *
37430701 TTTCTTTTTCTTTTTTTTGTTG
1 TTTCTTTTTCCTTTTTTT-TTA
37430723 TTTCTATTTTCCTTTTTTTTTA
1 TTTCT-TTTTCCTTTTTTTTTA
37430745 TTTCTT
1 TTTCTT
37430751 AAACGAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 1 0.04
22 12 0.48
23 12 0.48
ACGTcount: A:0.04, C:0.12, G:0.04, T:0.80
Consensus pattern (21 bp):
TTTCTTTTTCCTTTTTTTTTA
Found at i:37431385 original size:15 final size:16
Alignment explanation
Indices: 37431352--37431395 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
37431342 AGTCCTATTA
37431352 TTATTATTATTAT-CG
1 TTATTATTATTATACG
37431367 TTATTATTATTATAC-
1 TTATTATTATTATACG
37431382 TTATT-TTATATATA
1 TTATTATTAT-TATA
37431396 TGTATATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 4 0.15
15 22 0.81
16 1 0.04
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (16 bp):
TTATTATTATTATACG
Found at i:37431451 original size:14 final size:13
Alignment explanation
Indices: 37431432--37431467 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
37431422 ATATCATAAG
37431432 TTTTATATTATTA
1 TTTTATATTATTA
*
37431445 TTGTTATATTTTTA
1 TT-TTATATTATTA
37431459 TTTTATATT
1 TTTTATATT
37431468 TACTTATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (13 bp):
TTTTATATTATTA
Found at i:37432286 original size:110 final size:110
Alignment explanation
Indices: 37432105--37432507 Score: 643
Period size: 110 Copynumber: 3.7 Consensus size: 110
37432095 TTCTAATTGA
* * * *
37432105 GACAATATTTAGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGTTGGGTGTCGATTTTTCTC
1 GACAATGTTTTGCGTTTGGAAATTCGAGAAAACATACCCTAAGGTGCTGGGTGTCGATTTTTCTC
37432170 GTTCAACCAAATAGCTTAATATCCTTTTCAAAAATTTCAAAATAT
66 GTTCAACCAAATAGCTTAATATCCTTTTCAAAAATTTCAAAATAT
37432215 GACAATGTTTTGCGTTTGGAAATTCGAGAAAACATACCCTAAGGTGCTGGGTGTCGATTTTTCTC
1 GACAATGTTTTGCGTTTGGAAATTCGAGAAAACATACCCTAAGGTGCTGGGTGTCGATTTTTCTC
37432280 GTTCAACCAAATAGCTTAATATCCTTTTCAAAAATTTCAAAATAT
66 GTTCAACCAAATAGCTTAATATCCTTTTCAAAAATTTCAAAATAT
37432325 GACAATGTTTTGCGTTTGGAAATTCGAGAAAACATACCCTAAGGTGCTGGGTGTCGATTTTTCTC
1 GACAATGTTTTGCGTTTGGAAATTCGAGAAAACATACCCTAAGGTGCTGGGTGTCGATTTTTCTC
* * * *
37432390 ATTCAACCAAATAGCTAAATATCC-TTTCAAAAAATTCAAAATAA
66 GTTCAACCAAATAGCTTAATATCCTTTTCAAAAATTTCAAAATAT
* * * * * *
37432434 GGCAATGTTTTGCGTTTGGAAATTTGAG-GAACGTGCCCTAAGGTGCTGGGTTTCGA--TTTCTC
1 GACAATGTTTTGCGTTTGGAAATTCGAGAAAACATACCCTAAGGTGCTGGGTGTCGATTTTTCTC
*
37432496 GTTTAACCAAAT
66 GTTCAACCAAAT
37432508 TGCCAAATAT
Statistics
Matches: 277, Mismatches: 16, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
106 16 0.06
108 24 0.09
109 44 0.16
110 193 0.70
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (110 bp):
GACAATGTTTTGCGTTTGGAAATTCGAGAAAACATACCCTAAGGTGCTGGGTGTCGATTTTTCTC
GTTCAACCAAATAGCTTAATATCCTTTTCAAAAATTTCAAAATAT
Found at i:37433792 original size:29 final size:27
Alignment explanation
Indices: 37433733--37433790 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 27
37433723 ATCGACATAC
* *
37433733 TTTAATTATTAAATGAATTAATTTAAT
1 TTTAATTATTAAATGAATCAATATAAT
37433760 TTTACATTATTATAATGAATCAA-ATAAT
1 TTTA-ATTATTA-AATGAATCAATATAAT
37433788 TTT
1 TTT
37433791 TATTTAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 4 0.15
28 14 0.52
29 9 0.33
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.50
Consensus pattern (27 bp):
TTTAATTATTAAATGAATCAATATAAT
Found at i:37434868 original size:57 final size:59
Alignment explanation
Indices: 37434792--37434948 Score: 210
Period size: 61 Copynumber: 2.7 Consensus size: 59
37434782 AAAAAAAAAA
* * **
37434792 TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAGCAGGGT-AAAAAAA-ATTTT
1 TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAATACAGAAAAGTAAAAAAAATATTTT
*
37434849 TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAATACGAAAAAAAGTAAAAAAAATATTTT
1 TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAATAC--AGAAAAGTAAAAAAAATATTTT
* * *
37434910 TTTTGGTGCTGGCCTATTAATGGCCGGCACCCAATACAG
1 TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAATACAG
37434949 TACAATTTTC
Statistics
Matches: 87, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
57 36 0.41
59 5 0.06
60 7 0.08
61 39 0.45
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (59 bp):
TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAATACAGAAAAGTAAAAAAAATATTTT
Found at i:37435181 original size:109 final size:109
Alignment explanation
Indices: 37434882--37435228 Score: 486
Period size: 109 Copynumber: 3.2 Consensus size: 109
37434872 CCGGCACCCA
* * *
37434882 ATACGAAAAAAAGTAAAAAAAATATTTTTTTTGGTGCTGGCCTATTAATGGCCGGCACCCAATAC
1 ATACG-AAAAAAGTAAAAAAAATATTTTTTTGGGTGCTGGCCTATCAATGGCCGGCACCCAGTAC
*
37434947 AGTACAATTTTCTTTTACTTTTTTTCGTATCAGTATCAGGTATCAGT
65 AGTA-AATTTT-TTTTACTTTTTTTCGTGTCAGTATCAGGTATCAGT
* * *
37434994 ATACGAAAAAAGTAAAAAAAA-A---ATTTGGGTGTTGGCCTGTCAATGGCCGGCACCCAGTACA
1 ATACGAAAAAAGTAAAAAAAATATTTTTTTGGGTGCTGGCCTATCAATGGCCGGCACCCAGTACA
** * * * *
37435055 GTAAAAATTTTTTACTTTTTTTCGTGTTAGTTTCAGGAATTAGT
66 GTAAATTTTTTTTACTTTTTTTCGTGTCAGTATCAGGTATCAGT
* *
37435099 ATACGAAAAAAGTAAAAAAAATATTTTTTTGGGTGCTAGCCTATCAATGGTCGGCACCCAGTACA
1 ATACGAAAAAAGTAAAAAAAATATTTTTTTGGGTGCTGGCCTATCAATGGCCGGCACCCAGTACA
*
37435164 GTAAATTTTTTTTACTTTTTTTCGTGTCAGTATCAGGTATCAAT
66 GTAAATTTTTTTTACTTTTTTTCGTGTCAGTATCAGGTATCAGT
*
37435208 ATATGAAAAAAGTAAAAAAAA
1 ATACGAAAAAAGTAAAAAAAA
37435229 AAAATTTTGG
Statistics
Matches: 205, Mismatches: 26, Indels: 11
0.85 0.11 0.05
Matches are distributed among these distances:
105 51 0.25
106 5 0.02
107 36 0.18
109 91 0.44
110 1 0.00
111 16 0.08
112 5 0.02
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (109 bp):
ATACGAAAAAAGTAAAAAAAATATTTTTTTGGGTGCTGGCCTATCAATGGCCGGCACCCAGTACA
GTAAATTTTTTTTACTTTTTTTCGTGTCAGTATCAGGTATCAGT
Found at i:37445156 original size:20 final size:20
Alignment explanation
Indices: 37445118--37445157 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
37445108 AATATTTTCC
* *
37445118 AGTAAATCATTTTATAGAAA
1 AGTAAAACATTTTACAGAAA
*
37445138 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
37445158 TTATTTTACG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:37445172 original size:34 final size:35
Alignment explanation
Indices: 37445106--37445172 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
37445096 CAAACACCAG
* *
37445106 AAAATATTTTCCAGTAAATCATTTTATAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
37445141 AAAACATTTTCCAG-AAATTATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
37445173 TATTTTACTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 15 0.54
35 13 0.46
ACGTcount: A:0.46, C:0.10, G:0.09, T:0.34
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:37446669 original size:110 final size:111
Alignment explanation
Indices: 37446415--37446771 Score: 562
Period size: 112 Copynumber: 3.2 Consensus size: 111
37446405 GCCGGTACCA
*
37446415 AAAAAAATATTTTTTTTTACTTTTTTCGTATACTGATACCTTATACTGACACGAAAAAAAGT-AA
1 AAAAAAATATTTTTTTTTACTTTTTTCGTATACTGATACCTGATACTGACACG-AAAAAAGTAAA
*
37446479 AAAAAA--TTACTGTATTGGGTGCCGGAAATTGACAGGCCAGCACCC
65 AAAAAATTTTACTGTATTGGGTGCCGGCAATTGACAGGCCAGCACCC
37446524 AAAAAAATATTTTTTTTTACTTTTTTCGTATACTGATACCTGATACTGACACGAAAAAAGTAAAA
1 AAAAAAATATTTTTTTTTACTTTTTTCGTATACTGATACCTGATACTGACACGAAAAAAGTAAAA
* *
37446589 AAAAATTTTACTATATTGGGTGCCGGCCATTGACAGGCCAGCACCC
66 AAAAATTTTACTGTATTGGGTGCCGGCAATTGACAGGCCAGCACCC
*
37446635 AAAAAAATA-TTTTTTTTACTTTTTTCGTATACTGATACCTGATACTGACACGAAAAAAATAAAA
1 AAAAAAATATTTTTTTTTACTTTTTTCGTATACTGATACCTGATACTGACACGAAAAAAGTAAAA
*** * *
37446699 AGATTTTTTTTACTGTATTGGGTGCCGGCTATTGACAGGCCAGCTCCC
66 A-A-AAATTTTACTGTATTGGGTGCCGGCAATTGACAGGCCAGCACCC
37446747 AAAAAAATA-TTTTTTTTACTTTTTT
1 AAAAAAATATTTTTTTTTACTTTTTT
37446772 TTGTACTAGG
Statistics
Matches: 232, Mismatches: 11, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
108 8 0.03
109 60 0.26
110 55 0.24
111 46 0.20
112 63 0.27
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (111 bp):
AAAAAAATATTTTTTTTTACTTTTTTCGTATACTGATACCTGATACTGACACGAAAAAAGTAAAA
AAAAATTTTACTGTATTGGGTGCCGGCAATTGACAGGCCAGCACCC
Found at i:37446796 original size:112 final size:110
Alignment explanation
Indices: 37446415--37446771 Score: 558
Period size: 109 Copynumber: 3.2 Consensus size: 110
37446405 GCCGGTACCA
*
37446415 AAAAAAATATTTTTTTTTACTTTTTTCGTATACTGATACCTTATACTGACACGAAAAAAAGT-AA
1 AAAAAAATA-TTTTTTTTACTTTTTTCGTATACTGATACCTGATACTGACACGAAAAAAA-TAAA
*
37446479 AAAAAA--TTACTGTATTGGGTGCCGGAAATTGACAGGCCAGCACCC
64 AAAAAATTTTACTGTATTGGGTGCCGGCAATTGACAGGCCAGCACCC
*
37446524 AAAAAAATATTTTTTTTTACTTTTTTCGTATACTGATACCTGATACTGACACGAAAAAAGTAAAA
1 AAAAAAATA-TTTTTTTTACTTTTTTCGTATACTGATACCTGATACTGACACGAAAAAAATAAAA
* *
37446589 AAAAATTTTACTATATTGGGTGCCGGCCATTGACAGGCCAGCACCC
65 AAAAATTTTACTGTATTGGGTGCCGGCAATTGACAGGCCAGCACCC
37446635 AAAAAAATATTTTTTTTACTTTTTTCGTATACTGATACCTGATACTGACACGAAAAAAATAAAAA
1 AAAAAAATATTTTTTTTACTTTTTTCGTATACTGATACCTGATACTGACACGAAAAAAATAAAAA
*** * *
37446700 GATTTTTTTTACTGTATTGGGTGCCGGCTATTGACAGGCCAGCTCCC
66 -A-AAATTTTACTGTATTGGGTGCCGGCAATTGACAGGCCAGCACCC
37446747 AAAAAAATATTTTTTTTACTTTTTT
1 AAAAAAATATTTTTTTTACTTTTTT
37446772 TTGTACTAGG
Statistics
Matches: 231, Mismatches: 12, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
108 1 0.00
109 66 0.29
110 55 0.24
111 46 0.20
112 63 0.27
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (110 bp):
AAAAAAATATTTTTTTTACTTTTTTCGTATACTGATACCTGATACTGACACGAAAAAAATAAAAA
AAAATTTTACTGTATTGGGTGCCGGCAATTGACAGGCCAGCACCC
Found at i:37455420 original size:24 final size:24
Alignment explanation
Indices: 37455367--37455421 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
37455357 TACTCAGAGC
* *
37455367 ATGTATGTATGACACCATCTATAT
1 ATGTATGCATGACACCATCTACAT
* *
37455391 AAGTATGCATGACACCGAT-TGCAT
1 ATGTATGCATGACACC-ATCTACAT
37455415 ATGTATG
1 ATGTATG
37455422 TATCGAATTC
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
24 23 0.92
25 2 0.08
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (24 bp):
ATGTATGCATGACACCATCTACAT
Found at i:37458240 original size:33 final size:32
Alignment explanation
Indices: 37458203--37458311 Score: 107
Period size: 33 Copynumber: 3.4 Consensus size: 32
37458193 ACCTGATTAT
37458203 AGGGGCATCATCCCTGCTACTTGGCCCGCTTGA
1 AGGGGCATCATCCCTGCTACTTGGCCCGCTT-A
* * *
37458236 AGGGGCATCATCCCTACTAGTTGGCCGGCTTA
1 AGGGGCATCATCCCTGCTACTTGGCCCGCTTA
* * *
37458268 TA--GACA-CATCCCTGCTACTTGTCCTGCTTAA
1 -AGGGGCATCATCCCTGCTACTTGGCCCGCTT-A
*
37458299 AGGAGCATCATCC
1 AGGGGCATCATCC
37458312 GTACTAACTG
Statistics
Matches: 61, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
30 20 0.33
31 4 0.07
32 3 0.05
33 34 0.56
ACGTcount: A:0.20, C:0.31, G:0.23, T:0.26
Consensus pattern (32 bp):
AGGGGCATCATCCCTGCTACTTGGCCCGCTTA
Found at i:37458330 original size:63 final size:63
Alignment explanation
Indices: 37458211--37458330 Score: 159
Period size: 63 Copynumber: 1.9 Consensus size: 63
37458201 ATAGGGGCAT
* * **
37458211 CATCCCTGCTACTTGGCCCGCTTGAAGGGGCATCATCCCTACTAGTTGGCCGGCTTATAGACA
1 CATCCCTGCTACTTGGCCCGCTTAAAGGAGCATCATCCCTACTAACTGGCCGGCTTATAGACA
* * * * *
37458274 CATCCCTGCTACTTGTCCTGCTTAAAGGAGCATCATCCGTACTAACTGTCCTGCTTA
1 CATCCCTGCTACTTGGCCCGCTTAAAGGAGCATCATCCCTACTAACTGGCCGGCTTA
37458331 CAGCACTAGC
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
63 48 1.00
ACGTcount: A:0.20, C:0.32, G:0.20, T:0.28
Consensus pattern (63 bp):
CATCCCTGCTACTTGGCCCGCTTAAAGGAGCATCATCCCTACTAACTGGCCGGCTTATAGACA
Found at i:37463094 original size:22 final size:20
Alignment explanation
Indices: 37463065--37463108 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
37463055 TGGAGCATTG
**
37463065 AATTTTTATTTATTTGATAAA
1 AATTTTTAAATATTT-ATAAA
37463086 AATTATTTAAATATTTATAAA
1 AATT-TTTAAATATTTATAAA
37463107 AA
1 AA
37463109 CATGTAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (20 bp):
AATTTTTAAATATTTATAAA
Found at i:37467247 original size:3 final size:3
Alignment explanation
Indices: 37467239--37467288 Score: 66
Period size: 3 Copynumber: 16.3 Consensus size: 3
37467229 AATATAGTTG
*
37467239 TTA TTA TTA TTA TTA -TA TTA TTA TTA TTA TATA TTA TATA TTT TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA T-TA TTA TTA
37467285 TTA T
1 TTA T
37467289 ACCTACATAT
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
2 2 0.05
3 34 0.81
4 6 0.14
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:37467256 original size:23 final size:22
Alignment explanation
Indices: 37467219--37467288 Score: 74
Period size: 23 Copynumber: 3.2 Consensus size: 22
37467209 TTTTTTTAGT
*
37467219 TTATT-TTATTA-ATA-TAGTTG
1 TTATTATTATTATATATTA-TTA
37467239 TTATTATTATTATTATATTATTA
1 TTATTATTATTA-TATATTATTA
*
37467262 TTATTATATATTATATATTTTTA
1 TTATTAT-TATTATATATTATTA
37467285 TTAT
1 TTAT
37467289 ACCTACATAT
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
20 5 0.12
21 6 0.14
23 25 0.58
24 7 0.16
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (22 bp):
TTATTATTATTATATATTATTA
Found at i:37467259 original size:11 final size:11
Alignment explanation
Indices: 37467243--37467289 Score: 60
Period size: 11 Copynumber: 4.2 Consensus size: 11
37467233 TAGTTGTTAT
37467243 TATTATTATTA
1 TATTATTATTA
37467254 TATTATTATTA
1 TATTATTATTA
37467265 TTATATATTA-TA
1 -TAT-TATTATTA
*
37467277 TATTTTTATTA
1 TATTATTATTA
37467288 TA
1 TA
37467290 CCTACATATA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
10 4 0.12
11 18 0.56
12 5 0.16
13 5 0.16
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TATTATTATTA
Found at i:37467259 original size:14 final size:14
Alignment explanation
Indices: 37467240--37467288 Score: 68
Period size: 14 Copynumber: 3.6 Consensus size: 14
37467230 ATATAGTTGT
37467240 TATTATTATTATTA
1 TATTATTATTATTA
37467254 TATTATTATTATTA
1 TATTATTATTATTA
37467268 TA-TATTATATATT-
1 TATTATTAT-TATTA
37467281 T-TTATTAT
1 TATTATTAT
37467289 ACCTACATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
13 13 0.39
14 20 0.61
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TATTATTATTATTA
Found at i:37467262 original size:20 final size:20
Alignment explanation
Indices: 37467219--37467288 Score: 81
Period size: 20 Copynumber: 3.5 Consensus size: 20
37467209 TTTTTTTAGT
* *
37467219 TTATT-TTATTAATATAGTTG
1 TTATTATTATTATTATA-TTA
37467239 TTATTATTATTATTATATTA
1 TTATTATTATTATTATATTA
37467259 TTATTATTATATATTATA-TA
1 TTATTATTAT-TATTATATTA
*
37467279 TTTTTATTAT
1 TTATTATTAT
37467289 ACCTACATAT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
20 28 0.62
21 17 0.38
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (20 bp):
TTATTATTATTATTATATTA
Found at i:37472190 original size:7 final size:7
Alignment explanation
Indices: 37472158--37472221 Score: 78
Period size: 7 Copynumber: 9.0 Consensus size: 7
37472148 AGGGATGTGA
37472158 AAAAAT-
1 AAAAATG
37472164 AAAAATAG
1 AAAAAT-G
*
37472172 AAAAATA
1 AAAAATG
37472179 AAAAATG
1 AAAAATG
37472186 AAAAATG
1 AAAAATG
37472193 AAAAATG
1 AAAAATG
37472200 AAAAATGG
1 AAAAAT-G
37472208 AAAAA-G
1 AAAAATG
37472214 TAAAAATG
1 -AAAAATG
37472222 GAGAGGCTAA
Statistics
Matches: 51, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
6 7 0.14
7 31 0.61
8 13 0.25
ACGTcount: A:0.73, C:0.00, G:0.12, T:0.14
Consensus pattern (7 bp):
AAAAATG
Found at i:37473653 original size:50 final size:50
Alignment explanation
Indices: 37473504--37473655 Score: 144
Period size: 50 Copynumber: 3.0 Consensus size: 50
37473494 GTTGAAAATA
*
37473504 GCAGATTCTTATTTCCCTGGCGGTGCAGTGGAGCAGATTGAAGTCACAACG
1 GCAGA-TCTTATTTCCCTGGCGGTGCAGAGGAGCAGATTGAAGTCACAACG
** * * * * ** ** *
37473555 GCAGATCTGGTTTCCCCGACAGCGCA-ATTAAAAAGATTGAAGCCACAACG
1 GCAGATCTTATTTCCCTGGCGGTGCAGA-GGAGCAGATTGAAGTCACAACG
* * *
37473605 GCAGATCTTACTTCCCTGGCGGTGCAGAGGAGCAGATTGGAGTTACAACG
1 GCAGATCTTATTTCCCTGGCGGTGCAGAGGAGCAGATTGAAGTCACAACG
37473655 G
1 G
37473656 NNNNNNNNNN
Statistics
Matches: 73, Mismatches: 26, Indels: 5
0.70 0.25 0.05
Matches are distributed among these distances:
50 67 0.92
51 6 0.08
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (50 bp):
GCAGATCTTATTTCCCTGGCGGTGCAGAGGAGCAGATTGAAGTCACAACG
Found at i:37473887 original size:50 final size:49
Alignment explanation
Indices: 37473833--37474207 Score: 248
Period size: 50 Copynumber: 7.5 Consensus size: 49
37473823 GTAGCGGAGC
*
37473833 AGATTGAAGTCACAACGGCAGATCTGGTTTCCTCGACAGCGCAATTAAAA
1 AGATTGAAGTCACAACGGCGGATCTGGTTTCC-CGACAGCGCAATTAAAA
* *** * * * ** **
37473883 AGATTGAAGTCACAATGGCGGATCTTACTTCCCTGGCGGTGCAATGGAGC
1 AGATTGAAGTCACAACGGCGGATCTGGTTTCCC-GACAGCGCAATTAAAA
* * *
37473933 AGATTGAAGTCACAACAGCAGATCTGGTTTCCTCGACAGCGTAATTAAAA
1 AGATTGAAGTCACAACGGCGGATCTGGTTTCC-CGACAGCGCAATTAAAA
* *** * * * * **
37473983 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGC-AGTAGAGC
1 AGATTGAAGTCACAACGGCGGATCTGGTTTCCC-GACAGCGCAATTA-AAA
* *
37474033 AGATTGAAGTCACAACGGTGGATCTGGTTTCCCCAACAGCGCAATTAAAA
1 AGATTGAAGTCACAACGGCGGATCTGGTTT-CCCGACAGCGCAATTAAAA
* * * ** *** * * * * * * **
37474083 ATATTGAAGCCATAACGATGGATCTTACTTCCCTGGCGGTGTAGTGAAGC
1 AGATTGAAGTCACAACGGCGGATCTGGTTTCCC-GACAGCGCAATTAAAA
37474133 AGATTGAAGTCACAACGGCGGATCTGGTTTCCCCGACAGCGCAATTAAAA
1 AGATTGAAGTCACAACGGCGGATCTGGTTT-CCCGACAGCGCAATTAAAA
* * * *
37474183 AGATAGAGGCCACAACGACGGATCT
1 AGATTGAAGTCACAACGGCGGATCT
37474208 TACCTCCTTA
Statistics
Matches: 230, Mismatches: 87, Indels: 16
0.69 0.26 0.05
Matches are distributed among these distances:
49 8 0.03
50 212 0.92
51 10 0.04
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.22
Consensus pattern (49 bp):
AGATTGAAGTCACAACGGCGGATCTGGTTTCCCGACAGCGCAATTAAAA
Found at i:37473966 original size:100 final size:100
Alignment explanation
Indices: 37473789--37474264 Score: 621
Period size: 100 Copynumber: 4.8 Consensus size: 100
37473779 GAATAGAGTA
* * * * *
37473789 AAGCCACAACGGCGAATCTTACTTCCTTGGCGTTGTAGCGGAGCAGATTGAAGTCACAACGGCAG
1 AAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGCAGTGGAGCAGATTGAAGTCACAACGGCAG
*
37473854 ATCTGGTTTCCTCGACAGCGCAATTAAAAAGATTG
66 ATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTG
* * * *
37473889 AAGTCACAATGGCGGATCTTACTTCCCTGGCGGTGCAATGGAGCAGATTGAAGTCACAACAGCAG
1 AAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGCAGTGGAGCAGATTGAAGTCACAACGGCAG
* *
37473954 ATCTGGTTTCCTCGACAGCGTAATTAAAAAGATTG
66 ATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTG
* **
37473989 AAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGCAGTAGAGCAGATTGAAGTCACAACGGTGG
1 AAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGCAGTGGAGCAGATTGAAGTCACAACGGCAG
* *
37474054 ATCTGGTTTCCCCAACAGCGCAATTAAAAATATTG
66 ATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTG
* ** * * *
37474089 AAGCCATAACGATGGATCTTACTTCCCTGGCGGTGTAGTGAAGCAGATTGAAGTCACAACGGCGG
1 AAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGCAGTGGAGCAGATTGAAGTCACAACGGCAG
*
37474154 ATCTGGTTTCCCCGACAGCGCAATTAAAAAGATAG
66 ATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTG
* * * * * * * * * *
37474189 AGGCCACAACGACGGATCTTACCTCCTTAGCTGTGCAGTTGAACAGATTGAAG-CTACGACGGCG
1 AAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGCAGTGGAGCAGATTGAAGTC-ACAACGGCA
*
37474253 GATCTTGTTTCC
65 GATCTGGTTTCC
37474265 TTGACATTGT
Statistics
Matches: 331, Mismatches: 44, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
99 1 0.00
100 330 1.00
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (100 bp):
AAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGCAGTGGAGCAGATTGAAGTCACAACGGCAG
ATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTG
Found at i:37475676 original size:3 final size:3
Alignment explanation
Indices: 37475668--37475715 Score: 62
Period size: 3 Copynumber: 15.7 Consensus size: 3
37475658 AATATAGTTG
*
37475668 TTA TTA TTA TTA TTA TTA -TA ATA TTA TTA TTA TTA TATA TTA TATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA T-TA
37475714 TT
1 TT
37475716 TTTAGTATAC
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
2 2 0.05
3 33 0.80
4 6 0.15
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:37475694 original size:14 final size:14
Alignment explanation
Indices: 37475675--37475710 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
37475665 TTGTTATTAT
37475675 TATTATTATTATAA
1 TATTATTATTATAA
*
37475689 TATTATTATTATTA
1 TATTATTATTATAA
37475703 TA-TATTAT
1 TATTATTAT
37475711 ATATTTTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 6 0.29
14 15 0.71
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
TATTATTATTATAA
Found at i:37475694 original size:17 final size:16
Alignment explanation
Indices: 37475668--37475715 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 16
37475658 AATATAGTTG
37475668 TTAT-TATTATTATTA
1 TTATATATTATTATTA
37475683 TTATAATATTATTATTA
1 TTAT-ATATTATTATTA
37475700 TTATATATTATATATT
1 TTATATATTAT-TATT
37475716 TTTAGTATAC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.13
16 7 0.23
17 19 0.63
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTATATATTATTATTA
Found at i:37477008 original size:22 final size:22
Alignment explanation
Indices: 37476982--37477023 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
37476972 ACATTGCTAT
37476982 TTTGTATGTTAT-TGATTTTTAC
1 TTTGTAT-TTATCTGATTTTTAC
*
37477004 TTTGTATTTATCTTATTTTT
1 TTTGTATTTATCTGATTTTT
37477024 GTTGCAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.17, C:0.05, G:0.10, T:0.69
Consensus pattern (22 bp):
TTTGTATTTATCTGATTTTTAC
Found at i:37486165 original size:13 final size:13
Alignment explanation
Indices: 37486147--37486223 Score: 127
Period size: 13 Copynumber: 5.9 Consensus size: 13
37486137 AGTTCTTTAT
37486147 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
37486160 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
*
37486173 TGCTTTTCAGAAG
1 TGCTTTTGAGAAG
*
37486186 TACTTTTGAGAAG
1 TGCTTTTGAGAAG
37486199 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
*
37486212 TACTTTTGAGAA
1 TGCTTTTGAGAA
37486224 ATTTGAGTGT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 59 1.00
ACGTcount: A:0.26, C:0.09, G:0.26, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:37487032 original size:19 final size:19
Alignment explanation
Indices: 37487008--37487047 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
37486998 TTTTTCATGA
37487008 TTGTTAATCCCTTGGTCTT
1 TTGTTAATCCCTTGGTCTT
37487027 TTGTTAATCCCTTGGTCTT
1 TTGTTAATCCCTTGGTCTT
37487046 TT
1 TT
37487048 TCCCAATTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.10, C:0.20, G:0.15, T:0.55
Consensus pattern (19 bp):
TTGTTAATCCCTTGGTCTT
Found at i:37492911 original size:44 final size:43
Alignment explanation
Indices: 37492863--37493276 Score: 156
Period size: 44 Copynumber: 9.5 Consensus size: 43
37492853 CTAGTAATCC
*
37492863 TATCTCCCTGAGATTACAGTGGAGCGAATTAAAATAAAGGATCT
1 TATCTCCCTGAGATTACAGTGGAGCGAATTAAAAT-CAGGATCT
* * * ***
37492907 TATCTCTCTGA-AGTTACAGTAGAG-TAGA-TCGCATCAGG-TCT
1 TATCTCCCTGAGA-TTACAGTGGAGCGA-ATTAAAATCAGGATCT
* * * ***
37492948 CATCTCCCTGAGATTACAATGGAACAGACCGAAGAATTTCA-GATCT
1 TATCTCCCTGAGATTACAGTGGAGC-GAATTAA-AA--TCAGGATCT
* * * * * *
37492994 TATCTTCCTGAGATTACAGCGGAGC-AGATT-GAAGCTAGTAATCC
1 TATCTCCCTGAGATTACAGTGGAGCGA-ATTAAAATC-AG-GATCT
*
37493038 TATCTCCCTGAGATTACAGTGGAGCGAATTAAAATAAAGGATCT
1 TATCTCCCTGAGATTACAGTGGAGCGAATTAAAAT-CAGGATCT
* * * ***
37493082 TATCTCTCTGA-AGTTACAGTAGAG-TAGA-TCGCATCAGG-TCT
1 TATCTCCCTGAGA-TTACAGTGGAGCGA-ATTAAAATCAGGATCT
* * * ***
37493123 CATCTCCCTGAGATTACAATGGAACAGACCGAAGAATTTCA-GATCT
1 TATCTCCCTGAGATTACAGTGGAGC-GAATTAA-AA--TCAGGATCT
* * * * * *
37493169 TATCTTCCTGAGATTACAGCGGAGC-AGATT-GAAGCTAGTAATCC
1 TATCTCCCTGAGATTACAGTGGAGCGA-ATTAAAATC-AG-GATCT
* *
37493213 TATCTCACTGAGATTACAGTGGAGCGAATTAAAATAAAGGATCT
1 TATCTCCCTGAGATTACAGTGGAGCGAATTAAAAT-CAGGATCT
*
37493257 TATCTCTCTGA-AGTTACAGT
1 TATCTCCCTGAGA-TTACAGT
37493277 AGAGTAGATC
Statistics
Matches: 259, Mismatches: 76, Indels: 70
0.64 0.19 0.17
Matches are distributed among these distances:
41 42 0.16
42 10 0.04
43 17 0.07
44 126 0.49
45 12 0.05
46 52 0.20
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (43 bp):
TATCTCCCTGAGATTACAGTGGAGCGAATTAAAATCAGGATCT
Found at i:37493089 original size:175 final size:175
Alignment explanation
Indices: 37492793--37493483 Score: 1048
Period size: 175 Copynumber: 3.9 Consensus size: 175
37492783 TGTTCCTCAG
* *
37492793 GGAATAGACCGAAGAATTTCAGATCTTAT-ATCCTTGAGATTACAGCGGAGCAGATTGAAGCTAG
1 GGAACAGACCGAAGAATTTCAGATCTTATCTTCC-TGAGATTACAGCGGAGCAGATTGAAGCTAG
37492857 TAATCCTATCTCCCTGAGATTACAGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTT
65 TAATCCTATCTCCCTGAGATTACAGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTT
37492922 ACAGTAGAGTAGATCGCATCAGGTCTCATCTCCCTGAGATTACAAT
130 ACAGTAGAGTAGATCGCATCAGGTCTCATCTCCCTGAGATTACAAT
37492968 GGAACAGACCGAAGAATTTCAGATCTTATCTTCCTGAGATTACAGCGGAGCAGATTGAAGCTAGT
1 GGAACAGACCGAAGAATTTCAGATCTTATCTTCCTGAGATTACAGCGGAGCAGATTGAAGCTAGT
37493033 AATCCTATCTCCCTGAGATTACAGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
66 AATCCTATCTCCCTGAGATTACAGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
37493098 CAGTAGAGTAGATCGCATCAGGTCTCATCTCCCTGAGATTACAAT
131 CAGTAGAGTAGATCGCATCAGGTCTCATCTCCCTGAGATTACAAT
37493143 GGAACAGACCGAAGAATTTCAGATCTTATCTTCCTGAGATTACAGCGGAGCAGATTGAAGCTAGT
1 GGAACAGACCGAAGAATTTCAGATCTTATCTTCCTGAGATTACAGCGGAGCAGATTGAAGCTAGT
*
37493208 AATCCTATCTCACTGAGATTACAGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
66 AATCCTATCTCCCTGAGATTACAGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
* * * *
37493273 CAGTAGAGTAGATCGCATCAGGTCTTATCGCCCTGAGATTATAGT
131 CAGTAGAGTAGATCGCATCAGGTCTCATCTCCCTGAGATTACAAT
* * * * * ** * * *** ** **
37493318 GGAATAGATCGAAGAATCTCAGATCTTATCTCCCTGAGGTTGTAGTGAAGCAGACAAAAGAAACC
1 GGAACAGACCGAAGAATTTCAGATCTTATCTTCCTGAGATTACAGCGGAGCAGATTGAAGCTAGT
* * * *
37493383 AATCCTATCTCCTTGA-AGTTACAGTGGAGCGGATTAAAACCACA-GATCTTATCTCTCTGAAGT
66 AATCCTATCTCCCTGAGA-TTACAGTGGAGCGAATTAAAA-TAAAGGATCTTATCTCTCTGAAGT
* * *
37493446 TGCAGTAGAGCAGATCGTATCCA-GTCTCATCTCCCTGA
129 TACAGTAGAGTAGATCGCAT-CAGGTCTCATCTCCCTGA
37493484 AGTTGCAGTG
Statistics
Matches: 479, Mismatches: 33, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
174 1 0.00
175 471 0.98
176 7 0.01
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (175 bp):
GGAACAGACCGAAGAATTTCAGATCTTATCTTCCTGAGATTACAGCGGAGCAGATTGAAGCTAGT
AATCCTATCTCCCTGAGATTACAGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
CAGTAGAGTAGATCGCATCAGGTCTCATCTCCCTGAGATTACAAT
Found at i:37493436 original size:44 final size:43
Alignment explanation
Indices: 37493337--37493551 Score: 134
Period size: 44 Copynumber: 5.0 Consensus size: 43
37493327 CGAAGAATCT
* * * * ** *
37493337 CAGATCTTATCTCCCTGAGGTTGTAGTGAAGCAGACAAAAGAAAC
1 CAGATCTTATCTCCTTGAAGTTGCAGTGGAGCAGA-TTAA-AACC
* * *
37493382 CA-ATCCTATCTCCTTGAAGTTACAGTGGAGCGGATTAAAACC
1 CAGATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAACC
* *** *
37493424 ACAGATCTTATCT-CTCTGAAGTTGCAGTAGAGCAGA-TCGTATC
1 -CAGATCTTATCTCCT-TGAAGTTGCAGTGGAGCAGATTAAAACC
* * ** *
37493467 CAG-TCTCATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAAC
1 CAGATCTTATCTCCTTGAAGTTGCAGTGGAGCAGA-TTAA-AACC
* * *
37493511 CA-ATCCTATTTCCTTGAAGTTGCAGTGGAGCGGATTAAAAC
1 CAGATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAAC
37493552 GATGAATCAT
Statistics
Matches: 128, Mismatches: 34, Indels: 19
0.71 0.19 0.10
Matches are distributed among these distances:
41 26 0.20
42 9 0.07
43 11 0.09
44 80 0.62
45 2 0.02
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (43 bp):
CAGATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAACC
Found at i:37493502 original size:129 final size:129
Alignment explanation
Indices: 37493345--37493582 Score: 370
Period size: 129 Copynumber: 1.8 Consensus size: 129
37493335 CTCAGATCTT
* *
37493345 ATCTCCCTGAGGTTGTAGTGAAGCAGACAAAAGAAACCAATCCTATCTCCTTGAAGTTACAGTGG
1 ATCTCCCTGAAGTTGCAGTGAAGCAGACAAAAGAAACCAATCCTATCTCCTTGAAGTTACAGTGG
* *
37493410 AGCGGATTAAAACCACAG-ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGTATCCAGTCTC
66 AGCGGATTAAAACCA-AGAATCATATATCTCTGAAGTTGCAGTAGAGCAGATCGTATCCAGTCTC
* * * *
37493474 ATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCCTATTTCCTTGAAGTTGCAGTGG
1 ATCTCCCTGAAGTTGCAGTGAAGCAGACAAAAGAAACCAATCCTATCTCCTTGAAGTTACAGTGG
* *
37493539 AGCGGATTAAAACGATGAATCATATATCTCTGAAGTTGCAGTAG
66 AGCGGATTAAAACCAAGAATCATATATCTCTGAAGTTGCAGTAG
37493583 GTCAAATTAG
Statistics
Matches: 98, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
128 1 0.01
129 97 0.99
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.26
Consensus pattern (129 bp):
ATCTCCCTGAAGTTGCAGTGAAGCAGACAAAAGAAACCAATCCTATCTCCTTGAAGTTACAGTGG
AGCGGATTAAAACCAAGAATCATATATCTCTGAAGTTGCAGTAGAGCAGATCGTATCCAGTCTC
Found at i:37495570 original size:17 final size:17
Alignment explanation
Indices: 37495548--37495612 Score: 62
Period size: 17 Copynumber: 3.8 Consensus size: 17
37495538 ACGGTCAATT
*
37495548 TTTTGAAAACACGAAAA
1 TTTTGAAAACACGGAAA
* **
37495565 TTTTGAAAGAC-GGGATT
1 TTTTGAAA-ACACGGAAA
37495582 TTTTGAAAACACGGAAA
1 TTTTGAAAACACGGAAA
37495599 TTTATG-AAACACGG
1 TTT-TGAAAACACGG
37495613 TCAATTTTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
16 2 0.05
17 32 0.84
18 4 0.11
ACGTcount: A:0.42, C:0.11, G:0.20, T:0.28
Consensus pattern (17 bp):
TTTTGAAAACACGGAAA
Found at i:37495601 original size:71 final size:72
Alignment explanation
Indices: 37495510--37495646 Score: 217
Period size: 71 Copynumber: 1.9 Consensus size: 72
37495500 CACGAGGATT
*
37495510 TTTTTTGAGACACGAGAATTTATGAAACACGGTCAA-TTTTTTGAAAACACGAAAATTT-TGAAA
1 TTTTTTGAAACACGAGAATTTATGAAACACGGTCAATTTTTTTGAAAACACGAAAATTTATGAAA
37495573 GACGGGA
66 GACGGGA
37495580 TTTTTTGAAAACACG-GAAATTTATGAAACACGGTCAATTTTTTTTGAAAACACGAAAATTTATG
1 TTTTTTG-AAACACGAG-AATTTATGAAACACGGTCAA-TTTTTTTGAAAACACGAAAATTTATG
37495644 AAA
63 AAA
37495647 CACAGATTTT
Statistics
Matches: 61, Mismatches: 1, Indels: 6
0.90 0.01 0.09
Matches are distributed among these distances:
70 8 0.13
71 26 0.43
73 22 0.36
74 5 0.08
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32
Consensus pattern (72 bp):
TTTTTTGAAACACGAGAATTTATGAAACACGGTCAATTTTTTTGAAAACACGAAAATTTATGAAA
GACGGGA
Found at i:37495606 original size:18 final size:18
Alignment explanation
Indices: 37495526--37495646 Score: 70
Period size: 18 Copynumber: 6.6 Consensus size: 18
37495516 GAGACACGAG
37495526 AATTTATG-AAACACGGTCA
1 AATTTATGAAAACACGG--A
* * *
37495545 ATTTTTTGAAAACACGAA
1 AATTTATGAAAACACGGA
* *
37495563 AATTT-TG-AAAGACGGG
1 AATTTATGAAAACACGGA
* *
37495579 ATTTTTTGAAAACACGGA
1 AATTTATGAAAACACGGA
37495597 AATTTATG-AAACACGGTCA
1 AATTTATGAAAACACGG--A
* * *
37495616 ATTTTTTTTGAAAACACGAA
1 A--ATTTATGAAAACACGGA
37495636 AATTTATGAAA
1 AATTTATGAAA
37495647 CACAGATTTT
Statistics
Matches: 77, Mismatches: 17, Indels: 17
0.69 0.15 0.15
Matches are distributed among these distances:
16 10 0.13
17 12 0.16
18 26 0.34
19 8 0.10
20 9 0.12
21 5 0.06
22 7 0.09
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.31
Consensus pattern (18 bp):
AATTTATGAAAACACGGA
Found at i:37495659 original size:38 final size:37
Alignment explanation
Indices: 37495496--37495713 Score: 180
Period size: 38 Copynumber: 5.9 Consensus size: 37
37495486 GATAAAATAC
* * *
37495496 GAAACACGAGGATTTTTTTTG-AGACACGAGAATTTAT
1 GAAACACGA-TATTTTTTTTGAAAACACGAAAATTTAT
* *
37495533 GAAACACGGTCA-ATTTTTTGAAAACACGAAAATTT-T
1 GAAACACGAT-ATTTTTTTTGAAAACACGAAAATTTAT
* ** *
37495569 GAAAGACGGGA--TTTTTTGAAAACACGGAAATTTAT
1 GAAACACGATATTTTTTTTGAAAACACGAAAATTTAT
*
37495604 GAAACACGGTCAATTTTTTTTGAAAACACGAAAATTTAT
1 GAAACACGAT--ATTTTTTTTGAAAACACGAAAATTTAT
* * *
37495643 GAAACACAGATTTTTTTTTTGAAAATAAGAAAATTT-T
1 GAAACAC-GATATTTTTTTTGAAAACACGAAAATTTAT
* *
37495680 CGAAATACGGGA-ATTTTTTTTGAAAACATGAAAA
1 -GAAACAC--GATATTTTTTTTGAAAACACGAAAA
37495714 CATGAAAATT
Statistics
Matches: 151, Mismatches: 20, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
34 21 0.14
35 10 0.07
36 16 0.11
37 23 0.15
38 47 0.31
39 32 0.21
40 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.33
Consensus pattern (37 bp):
GAAACACGATATTTTTTTTGAAAACACGAAAATTTAT
Found at i:37495761 original size:18 final size:18
Alignment explanation
Indices: 37495708--37495760 Score: 74
Period size: 17 Copynumber: 3.1 Consensus size: 18
37495698 TTTGAAAACA
*
37495708 TGAAAACATGAAAA-TTT
1 TGAAAACACGAAAATTTT
37495725 TGAAAACACGAAAATTTT
1 TGAAAACACGAAAATTTT
*
37495743 TG-AAACACGAGAATTTT
1 TGAAAACACGAAAATTTT
37495760 T
1 T
37495761 TTTTTTTGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
17 28 0.85
18 5 0.15
ACGTcount: A:0.47, C:0.09, G:0.13, T:0.30
Consensus pattern (18 bp):
TGAAAACACGAAAATTTT
Found at i:37495799 original size:67 final size:69
Alignment explanation
Indices: 37495693--37495821 Score: 192
Period size: 67 Copynumber: 1.9 Consensus size: 69
37495683 AATACGGGAA
*
37495693 TTTTTTTTGAAAACATGAAAACATGAAAATTTTGAAAACAC-GAAAATTTTTG-AAACACGAGAA
1 TTTTTTTTGAAAACACGAAAACATGAAAATTTTGAAAACACGGAAAATTTTTGAAAACACGAGAA
37495756 TTTT
66 TTTT
* * *
37495760 TTTTTTTTGAAAACACGAAAACATGAAAA-TTTGTCAAACACGGGAATTTTTTGAAAACACGA
1 TTTTTTTTGAAAACACGAAAACATGAAAATTTTG-AAAACACGGAAAATTTTTGAAAACACGA
37495822 TAACATCAAA
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
66 4 0.07
67 34 0.62
68 9 0.16
69 8 0.15
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.33
Consensus pattern (69 bp):
TTTTTTTTGAAAACACGAAAACATGAAAATTTTGAAAACACGGAAAATTTTTGAAAACACGAGAA
TTTT
Found at i:37495922 original size:18 final size:18
Alignment explanation
Indices: 37495882--37495926 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
37495872 TTGAAAACAC
37495882 GAAAACACGAAAAATTTT
1 GAAAACACGAAAAATTTT
* *
37495900 -CAAACACGGAAAATTTT
1 GAAAACACGAAAAATTTT
37495917 GAAAACACGA
1 GAAAACACGA
37495927 TAACATGAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.53, C:0.16, G:0.13, T:0.18
Consensus pattern (18 bp):
GAAAACACGAAAAATTTT
Found at i:37495969 original size:19 final size:20
Alignment explanation
Indices: 37495945--37495988 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
37495935 AAAAAATATT
*
37495945 CACGAGAGTTTTTTTG-AAA
1 CACGAGAATTTTTTTGAAAA
37495964 CACGAGAATTTTTTTGAAAA
1 CACGAGAATTTTTTTGAAAA
37495984 CACGA
1 CACGA
37495989 AAACACGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (20 bp):
CACGAGAATTTTTTTGAAAA
Found at i:37496027 original size:18 final size:18
Alignment explanation
Indices: 37495987--37496031 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
37495977 TTGAAAACAC
37495987 GAAAACACGAAAAATTTT
1 GAAAACACGAAAAATTTT
* * *
37496005 -CAAACACGGAAATTTTT
1 GAAAACACGAAAAATTTT
37496022 GAAAACACGA
1 GAAAACACGA
37496032 TAACATGAAA
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.51, C:0.16, G:0.13, T:0.20
Consensus pattern (18 bp):
GAAAACACGAAAAATTTT
Found at i:37496030 original size:43 final size:45
Alignment explanation
Indices: 37495956--37496043 Score: 126
Period size: 43 Copynumber: 2.0 Consensus size: 45
37495946 ACGAGAGTTT
* *
37495956 TTTTGAAACACGAGAATTTTTTTGAAAACACGAAAACACGAAAAA
1 TTTTCAAACACGAGAATATTTTTGAAAACACGAAAACACGAAAAA
* *
37496001 TTTTCAAACACG-GAA-ATTTTTGAAAACACGATAACATGAAAAA
1 TTTTCAAACACGAGAATATTTTTGAAAACACGAAAACACGAAAAA
37496044 ATATTCACGA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 25 0.64
44 3 0.08
45 11 0.28
ACGTcount: A:0.49, C:0.14, G:0.12, T:0.25
Consensus pattern (45 bp):
TTTTCAAACACGAGAATATTTTTGAAAACACGAAAACACGAAAAA
Found at i:37496066 original size:104 final size:104
Alignment explanation
Indices: 37495761--37496192 Score: 762
Period size: 104 Copynumber: 4.1 Consensus size: 104
37495751 GAGAATTTTT
* *
37495761 TTTTTTTGAAAACACGAAAACATG-AAAATTTGTCAAACACGGGAATTTTTTGAAAACACGATAA
1 TTTTTTTGAAAACACGAAAACACGAAAAATTT-TCAAACAC-GGAAATTTTTGAAAACACGATAA
*
37495825 CATCAAAAAAATATTCACGAGAG-TTTTTTGAAACACGAGAA
64 CAT-GAAAAAATATTCACGAGAGTTTTTTTGAAACACGAGAA
*
37495866 TTTTTTTTGAAAACACGAAAACACGAAAAATTTTCAAACACGGAAAATTTTGAAAACACGATAAC
1 -TTTTTTTGAAAACACGAAAACACGAAAAATTTTCAAACACGGAAATTTTTGAAAACACGATAAC
37495931 ATGAAAAAAATATTCACGAGAGTTTTTTTGAAACACGAGAA
65 ATG-AAAAAATATTCACGAGAGTTTTTTTGAAACACGAGAA
37495972 TTTTTTTGAAAACACGAAAACACGAAAAATTTTCAAACACGGAAATTTTTGAAAACACGATAACA
1 TTTTTTTGAAAACACGAAAACACGAAAAATTTTCAAACACGGAAATTTTTGAAAACACGATAACA
37496037 TGAAAAAATATTCACGAGAGTTTTTTTGAAACACGAGAA
66 TGAAAAAATATTCACGAGAGTTTTTTTGAAACACGAGAA
37496076 TTTTTTTGAAAACACGAAAACACGAAAAATTTTCAAACACGGAAATTTTTGAAAACACGATAACA
1 TTTTTTTGAAAACACGAAAACACGAAAAATTTTCAAACACGGAAATTTTTGAAAACACGATAACA
37496141 TGAAAAAATATTCACGAGAGTTTTTTTGAAACACGAGAA
66 TGAAAAAATATTCACGAGAGTTTTTTTGAAACACGAGAA
37496180 -TTTTTTGAAAACA
1 TTTTTTTGAAAACA
37496193 TTTTTCAAAC
Statistics
Matches: 318, Mismatches: 5, Indels: 9
0.96 0.02 0.03
Matches are distributed among these distances:
103 13 0.04
104 141 0.44
105 108 0.34
106 49 0.15
107 7 0.02
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.28
Consensus pattern (104 bp):
TTTTTTTGAAAACACGAAAACACGAAAAATTTTCAAACACGGAAATTTTTGAAAACACGATAACA
TGAAAAAATATTCACGAGAGTTTTTTTGAAACACGAGAA
Found at i:37496073 original size:19 final size:20
Alignment explanation
Indices: 37496049--37496092 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
37496039 AAAAAATATT
*
37496049 CACGAGAGTTTTTTTG-AAA
1 CACGAGAATTTTTTTGAAAA
37496068 CACGAGAATTTTTTTGAAAA
1 CACGAGAATTTTTTTGAAAA
37496088 CACGA
1 CACGA
37496093 AAACACGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (20 bp):
CACGAGAATTTTTTTGAAAA
Found at i:37496097 original size:209 final size:210
Alignment explanation
Indices: 37495761--37496192 Score: 766
Period size: 209 Copynumber: 2.1 Consensus size: 210
37495751 GAGAATTTTT
* *
37495761 TTTTTTTGAAAACACGAAAACATGAAAATTTGTCAAACACGGGAATTTTTTGAAAACACGATAAC
1 TTTTTTTGAAAACACGAAAACACGAAAATTTGTCAAACACGGGAAATTTTTGAAAACACGATAAC
37495826 ATCAAAAAAATATTCACGAGAGTTTTTTGAAACACGAGAATTTTTTTTGAAAACACGAAAACACG
66 ATCAAAAAAATATTCACGAGAGTTTTTTGAAACACGAGAATTTTTTTTGAAAACACGAAAACACG
37495891 AAAAATTTTCAAACACGGAAAATTTTGAAAACACGATAACATGAAAAAAATATTCACGAGAGTTT
131 AAAAATTTTCAAACACGGAAAATTTTGAAAACACGATAACATG-AAAAAATATTCACGAGAGTTT
37495956 TTTTGAAACACGAGAA
195 TTTTGAAACACGAGAA
37495972 TTTTTTTGAAAACACGAAAACACGAAAAATTT-TCAAACAC-GGAAATTTTTGAAAACACGATAA
1 TTTTTTTGAAAACACGAAAACACG-AAAATTTGTCAAACACGGGAAATTTTTGAAAACACGATAA
*
37496035 CAT-GAAAAAATATTCACGAGAGTTTTTTTGAAACACGAGAA-TTTTTTTGAAAACACGAAAACA
65 CATCAAAAAAATATTCACGAGAG-TTTTTTGAAACACGAGAATTTTTTTTGAAAACACGAAAACA
*
37496098 CGAAAAATTTTCAAACACGGAAATTTTTGAAAACACGATAACATGAAAAAATATTCACGAGAGTT
129 CGAAAAATTTTCAAACACGGAAAATTTTGAAAACACGATAACATGAAAAAATATTCACGAGAGTT
37496163 TTTTTGAAACACGAGAA
194 TTTTTGAAACACGAGAA
37496180 -TTTTTTGAAAACA
1 TTTTTTTGAAAACA
37496193 TTTTTCAAAC
Statistics
Matches: 215, Mismatches: 4, Indels: 8
0.95 0.02 0.04
Matches are distributed among these distances:
207 13 0.06
208 37 0.17
209 84 0.39
210 43 0.20
211 31 0.14
212 7 0.03
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.28
Consensus pattern (210 bp):
TTTTTTTGAAAACACGAAAACACGAAAATTTGTCAAACACGGGAAATTTTTGAAAACACGATAAC
ATCAAAAAAATATTCACGAGAGTTTTTTGAAACACGAGAATTTTTTTTGAAAACACGAAAACACG
AAAAATTTTCAAACACGGAAAATTTTGAAAACACGATAACATGAAAAAATATTCACGAGAGTTTT
TTTGAAACACGAGAA
Found at i:37496131 original size:18 final size:18
Alignment explanation
Indices: 37496091--37496135 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
37496081 TTGAAAACAC
37496091 GAAAACACGAAAAATTTT
1 GAAAACACGAAAAATTTT
* * *
37496109 -CAAACACGGAAATTTTT
1 GAAAACACGAAAAATTTT
37496126 GAAAACACGA
1 GAAAACACGA
37496136 TAACATGAAA
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.51, C:0.16, G:0.13, T:0.20
Consensus pattern (18 bp):
GAAAACACGAAAAATTTT
Found at i:37496134 original size:43 final size:45
Alignment explanation
Indices: 37496060--37496147 Score: 126
Period size: 43 Copynumber: 2.0 Consensus size: 45
37496050 ACGAGAGTTT
* *
37496060 TTTTGAAACACGAGAATTTTTTTGAAAACACGAAAACACGAAAAA
1 TTTTCAAACACGAGAATATTTTTGAAAACACGAAAACACGAAAAA
* *
37496105 TTTTCAAACACG-GAA-ATTTTTGAAAACACGATAACATGAAAAA
1 TTTTCAAACACGAGAATATTTTTGAAAACACGAAAACACGAAAAA
37496148 ATATTCACGA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 25 0.64
44 3 0.08
45 11 0.28
ACGTcount: A:0.49, C:0.14, G:0.12, T:0.25
Consensus pattern (45 bp):
TTTTCAAACACGAGAATATTTTTGAAAACACGAAAACACGAAAAA
Found at i:37496185 original size:18 final size:18
Alignment explanation
Indices: 37496162--37496267 Score: 79
Period size: 18 Copynumber: 6.3 Consensus size: 18
37496152 TCACGAGAGT
37496162 TTTTTTGAAACACGAGAA
1 TTTTTTGAAACACGAGAA
37496180 TTTTTTGAAA-AC----A
1 TTTTTTGAAACACGAGAA
* *
37496193 -TTTTTCAAACACGGGAA
1 TTTTTTGAAACACGAGAA
*
37496210 -TTTTTGAAAACACGAAAA
1 TTTTTTG-AAACACGAGAA
**
37496228 TTTTTT-ATTCACGAGAA
1 TTTTTTGAAACACGAGAA
37496245 -TTTTTGAAACACG-GAAA
1 TTTTTTGAAACACGAG-AA
37496262 TTTTTT
1 TTTTTT
37496268 TTAAAAAGGA
Statistics
Matches: 69, Mismatches: 9, Indels: 20
0.70 0.09 0.20
Matches are distributed among these distances:
12 8 0.12
13 3 0.04
16 6 0.09
17 23 0.33
18 24 0.35
19 5 0.07
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.39
Consensus pattern (18 bp):
TTTTTTGAAACACGAGAA
Found at i:37496214 original size:17 final size:17
Alignment explanation
Indices: 37496192--37496266 Score: 60
Period size: 17 Copynumber: 4.4 Consensus size: 17
37496182 TTTTGAAAAC
* **
37496192 ATTTTTCAAACACGGGA
1 ATTTTTAAAACACGAAA
37496209 ATTTTTGAAAACACGAAA
1 ATTTTT-AAAACACGAAA
* ** *
37496227 ATTTTTTATTCACGAGA
1 ATTTTTAAAACACGAAA
* *
37496244 ATTTTTGAAACACGGAA
1 ATTTTTAAAACACGAAA
37496261 ATTTTT
1 ATTTTT
37496267 TTTAAAAAGG
Statistics
Matches: 45, Mismatches: 12, Indels: 2
0.76 0.20 0.03
Matches are distributed among these distances:
17 31 0.69
18 14 0.31
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.37
Consensus pattern (17 bp):
ATTTTTAAAACACGAAA
Found at i:37496214 original size:29 final size:30
Alignment explanation
Indices: 37496163--37496221 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
37496153 CACGAGAGTT
*
37496163 TTTTTGAAACACGAGAATTTTTTGAAAACA
1 TTTTTCAAACACGAGAATTTTTTGAAAACA
*
37496193 TTTTTCAAACACGGGAA-TTTTTGAAAACA
1 TTTTTCAAACACGAGAATTTTTTGAAAACA
37496222 CGAAAATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 12 0.44
30 15 0.56
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.36
Consensus pattern (30 bp):
TTTTTCAAACACGAGAATTTTTTGAAAACA
Found at i:37496268 original size:35 final size:35
Alignment explanation
Indices: 37496202--37496267 Score: 107
Period size: 34 Copynumber: 1.9 Consensus size: 35
37496192 ATTTTTCAAA
*
37496202 CACGGGAATTTTTGAAAACACGAAAATTTTTTATT
1 CACGAGAATTTTTGAAAACACGAAAATTTTTTATT
*
37496237 CACGAGAATTTTTG-AAACACGGAAATTTTTT
1 CACGAGAATTTTTGAAAACACGAAAATTTTTT
37496268 TTAAAAAGGA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (35 bp):
CACGAGAATTTTTGAAAACACGAAAATTTTTTATT
Found at i:37496315 original size:17 final size:17
Alignment explanation
Indices: 37496276--37496319 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
37496266 TTTTAAAAAG
37496276 GAAACACGAGAAATTTT
1 GAAACACGAGAAATTTT
*
37496293 GAAAACATGA-AAATTTTT
1 G-AAACACGAGAAA-TTTT
37496311 GAAACACGA
1 GAAACACGA
37496320 TTTTTAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 11 0.48
18 12 0.52
ACGTcount: A:0.50, C:0.11, G:0.16, T:0.23
Consensus pattern (17 bp):
GAAACACGAGAAATTTT
Done.