Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92286807
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3302597 characters in sequence are not A, C, G, or T
File 265 of 271
Found at i:90322769 original size:128 final size:128
Alignment explanation
Indices: 90322536--90322924 Score: 584
Period size: 128 Copynumber: 3.0 Consensus size: 128
90322526 ATAGCAAAAT
* * *
90322536 CAAGGGGCTCCTTACTATTAGAAATAGAGAGGCATTTAATCTCCATTTCATTCATCCCTCACTCA
1 CAAGAGGCTCCTCACTATTAGAAATAGAGAGGCATTTGATCTCCATTTCATTCATCCCTCACTCA
* *
90322601 CCATCTCTTCTCCATTTTCTCTCTTATTTCACTTCCCTTTTTCCATTCTTCAATA-AGTGTTTG
66 CCATCTTTTCTCCATTTTCTCTCTTCTTTCACTTCCCTTTTTCCATTCTTCAA-AGAGTGTTTG
* * * *
90322664 CAAGAGGCTCCTCACTATTACAAATAAAGAGACATTTGATCTCTATTTCATTCATCCCTCACTCA
1 CAAGAGGCTCCTCACTATTAGAAATAGAGAGGCATTTGATCTCCATTTCATTCATCCCTCACTCA
*
90322729 CCATCTTTTCTCCATTTTCTCTCTTCTTTCACTTCCCTTTTTTCCATTCTTCAAAGTGTGTTTG
66 CCATCTTTTCTCCATTTTCTCTCTTCTTTCACTTCCC-TTTTTCCATTCTTCAAAGAGTGTTTG
*
90322793 CAA-AGAGCTCCTCACTATTAGAAATAGAGAGGCATTTGATCTCCATTTCATTCATCCCTCATTC
1 CAAGAG-GCTCCTCACTATTAGAAATAGAGAGGCATTTGATCTCCATTTCATTCATCCCTCACTC
** * * * *
90322857 AATATCTTTTCTCCCTTTTCTCTCTTCTTTCACTTTCATTTTTCTATTCTTCAAAGAGTGTTTG
65 ACCATCTTTTCTCCATTTTCTCTCTTCTTTCACTTCCCTTTTTCCATTCTTCAAAGAGTGTTTG
90322921 CAAG
1 CAAG
90322925 GCTTTGAGAG
Statistics
Matches: 235, Mismatches: 22, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
128 123 0.52
129 112 0.48
ACGTcount: A:0.22, C:0.27, G:0.09, T:0.41
Consensus pattern (128 bp):
CAAGAGGCTCCTCACTATTAGAAATAGAGAGGCATTTGATCTCCATTTCATTCATCCCTCACTCA
CCATCTTTTCTCCATTTTCTCTCTTCTTTCACTTCCCTTTTTCCATTCTTCAAAGAGTGTTTG
Found at i:90328874 original size:220 final size:221
Alignment explanation
Indices: 90328462--90328875 Score: 638
Period size: 220 Copynumber: 1.9 Consensus size: 221
90328452 CTTTGATACA
* *
90328462 TGATATTCGTGATAGGTTTTAAATATTTATAATGAATCGTTCTTGAAACTAACTATTATCACGAT
1 TGATATTCGTGATAGGTTTTAAATATTTATAATGAATCGTTCTCGAAACTAACTATTATCACAAT
* * * * *
90328527 GAAGGCAAGTGTACTTATTGAACAGTAGTATAGCTTTAGCAAGACTGGATTTTCGAACCCAAAGG
66 GAAGGCAAGTGTACCTATCGAACAGTAGTATAGCTTTAGCAAGACCGGATTGTCAAACCCAAAGG
* *
90328592 AACTAAAAGTACTAGTATCAACTTTTTTTTATTATCTAGCCTAAAAAATAAAAGGGTTTTGTTTA
131 AACTAAAAGTACTAGTATCAACTTCTTTTTATTATCTAGCCTAAAAAATAAAAGGATTTTGTTTA
90328657 TCTAACTAATAAACTAAATGATCTCT
196 TCTAACTAATAAACTAAATGATCTCT
* *
90328683 TGAT-TTCGTGATAGGTTTTAAATATTTATAATTAATCGTTCTCGAAACTAACTATTATCGCAAT
1 TGATATTCGTGATAGGTTTTAAATATTTATAATGAATCGTTCTCGAAACTAACTATTATCACAAT
* *
90328747 GTAGGCAAGTGTACCTATCGAACAGTAGTATAGTTTTAGCAAGACCGGATTGTCAAACCCAAAGG
66 GAAGGCAAGTGTACCTATCGAACAGTAGTATAGCTTTAGCAAGACCGGATTGTCAAACCCAAAGG
* *
90328812 AACTAAAAGTACTAGTAAT-GACTGTCTTTTTATTATCTAGCCT-AAGAAT-AAAGAGATTTTGT
131 AACTAAAAGTACTAGT-ATCAACT-TCTTTTTATTATCTAGCCTAAAAAATAAAAG-GATTTTGT
90328874 TT
193 TT
90328876 TAATTAACTA
Statistics
Matches: 175, Mismatches: 15, Indels: 7
0.89 0.08 0.04
Matches are distributed among these distances:
219 4 0.02
220 147 0.84
221 24 0.14
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (221 bp):
TGATATTCGTGATAGGTTTTAAATATTTATAATGAATCGTTCTCGAAACTAACTATTATCACAAT
GAAGGCAAGTGTACCTATCGAACAGTAGTATAGCTTTAGCAAGACCGGATTGTCAAACCCAAAGG
AACTAAAAGTACTAGTATCAACTTCTTTTTATTATCTAGCCTAAAAAATAAAAGGATTTTGTTTA
TCTAACTAATAAACTAAATGATCTCT
Found at i:90337417 original size:51 final size:50
Alignment explanation
Indices: 90337352--90337493 Score: 162
Period size: 51 Copynumber: 2.9 Consensus size: 50
90337342 TGTAAGGTCG
* * *
90337352 CATGTGTAGCACTAAGTGTAGGCTACTATGTGTACCTGATAACTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTT-GATCA
* * * * * *
90337403 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAACGGATAA-TTGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTGATCA
* *
90337452 CATGTGTAGTACTATGTGCA-GCTACTATGCGTACCAGATAAC
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAAC
90337494 CTTGTCTACA
Statistics
Matches: 76, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
48 17 0.22
49 21 0.28
50 2 0.03
51 36 0.47
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTGATCA
Found at i:90343933 original size:23 final size:23
Alignment explanation
Indices: 90343903--90343949 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
90343893 TGGTTTGAGG
90343903 AGTGTATACTCCTCATTCCTGCT
1 AGTGTATACTCCTCATTCCTGCT
90343926 AGTGTATACTCCTCATTCCTGCT
1 AGTGTATACTCCTCATTCCTGCT
90343949 A
1 A
90343950 TGAATCCCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.19, C:0.30, G:0.13, T:0.38
Consensus pattern (23 bp):
AGTGTATACTCCTCATTCCTGCT
Found at i:90354436 original size:24 final size:24
Alignment explanation
Indices: 90354390--90354446 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 24
90354380 CACTTTTATC
90354390 TTTATTTATCTTCTTTAAGTACT-T
1 TTTATTT-TCTTCTTTAAGTACTAT
90354414 TTTATTTTCTTTCCTTTAA-TACTAT
1 TTTATTTTC-TT-CTTTAAGTACTAT
*
90354439 TTCATTTT
1 TTTATTTT
90354447 TAGGTTTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
23 2 0.07
24 13 0.45
25 14 0.48
ACGTcount: A:0.19, C:0.14, G:0.02, T:0.65
Consensus pattern (24 bp):
TTTATTTTCTTCTTTAAGTACTAT
Found at i:90365040 original size:43 final size:42
Alignment explanation
Indices: 90365005--90365159 Score: 152
Period size: 43 Copynumber: 3.7 Consensus size: 42
90364995 TGTGTTCTCG
*
90365005 TGTAAGACCACATCTGGGACATTGGCATCGATATGTGATTACG
1 TGTAAGACCACATCTGGGACATTGGCATCGATATGTGATT-CA
** * * *
90365048 TGTAAGACCATGTCTGGGACATCGACATCG-TATTTGATTCA
1 TGTAAGACCACATCTGGGACATTGGCATCGATATGTGATTCA
* * * * *
90365089 TGTAAAACC-CTATCTAGGACAGTGGCATCGATATGTAATAGCA
1 TGTAAGACCAC-ATCTGGGACATTGGCATCGATATGTGAT-TCA
* *
90365132 TGTAACACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACATCTGGGACATTGGCAT
90365160 TGTACGATAT
Statistics
Matches: 88, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
41 23 0.26
42 14 0.16
43 50 0.57
44 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (42 bp):
TGTAAGACCACATCTGGGACATTGGCATCGATATGTGATTCA
Found at i:90366947 original size:48 final size:47
Alignment explanation
Indices: 90366827--90367041 Score: 222
Period size: 46 Copynumber: 4.6 Consensus size: 47
90366817 GTGATTGTGT
* * *
90366827 GCTAGTGTAAAACATGTCTGGGACATGCATCGGCCAC-A-ATATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATGA-A
* * * *
90366873 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCGTCGAGATATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATA-TGAA
* * * * *
90366921 GCTAGTGTAAGCCATGTCTGGGACATGCATCAGCATTGAGACA-GGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATGAA
*
90366967 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGATA-GACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATG--AA
* * *
90367015 GCTAATGTAAGACCTATCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
90367042 GCGTCAGCTT
Statistics
Matches: 142, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
46 73 0.51
47 1 0.01
48 66 0.46
49 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATGAA
Found at i:90366988 original size:94 final size:94
Alignment explanation
Indices: 90366871--90367041 Score: 245
Period size: 94 Copynumber: 1.8 Consensus size: 94
90366861 CACAATATGA
* * *** *
90366871 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCGTCGAGATATTTAAGCTAGTGTAAG-CCA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATAGACAAGCTAATGTAAGACC-
*
90366935 TGTCTGGGACATGCATCAGCATTGAGACAG
65 TATCTGGGACATGCATCAGCATTGAGACAG
* *
90366965 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGATAGACAAGCTAATGTAAGACCT
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATAGACAAGCTAATGTAAGACCT
90367030 ATCTGGGACATG
66 ATCTGGGACATG
90367042 GCGTCAGCTT
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
94 65 0.97
95 2 0.03
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (94 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATAGACAAGCTAATGTAAGACCT
ATCTGGGACATGCATCAGCATTGAGACAG
Found at i:90368274 original size:22 final size:21
Alignment explanation
Indices: 90368249--90368289 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
90368239 TCGAATTGGT
*
90368249 CACACGGGCGTGTTGCCCCTCC
1 CACACGGGCATG-TGCCCCTCC
*
90368271 CACACGTGCATGTGCCCCT
1 CACACGGGCATGTGCCCCT
90368290 ATGTCTAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.12, C:0.44, G:0.24, T:0.20
Consensus pattern (21 bp):
CACACGGGCATGTGCCCCTCC
Found at i:90375402 original size:55 final size:54
Alignment explanation
Indices: 90375286--90375406 Score: 136
Period size: 55 Copynumber: 2.2 Consensus size: 54
90375276 TACCAAAACA
* *
90375286 ACACGGGCGTGTGACACGCCCGTGTGGAAGAACCAGGGGTGAACCTGTTAAAAT
1 ACACGGGCGTGTGACACGCCCGTGTGCAAGAACCAGGGCTGAACCTGTTAAAAT
* * * * * *
90375340 AGGACGGGCGTGTGACACGCCCGTGT-CTAGCACCCATGGCTGAACCTGTTAGATT
1 A-CACGGGCGTGTGACACGCCCGTGTGCAAG-AACCAGGGCTGAACCTGTTAAAAT
90375395 GACACGGGCGTG
1 -ACACGGGCGTG
90375407 GATCTACATA
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
54 3 0.05
55 51 0.93
56 1 0.02
ACGTcount: A:0.23, C:0.25, G:0.34, T:0.18
Consensus pattern (54 bp):
ACACGGGCGTGTGACACGCCCGTGTGCAAGAACCAGGGCTGAACCTGTTAAAAT
Found at i:90377359 original size:7 final size:6
Alignment explanation
Indices: 90377313--90377358 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
90377303 TTTAATTCAA
* * * *
90377313 TTTTAT CTTTAT TTTTAT TTTTCT TTCTAC TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
90377359 TTAAGTTTTT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.13, C:0.09, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:90386291 original size:17 final size:17
Alignment explanation
Indices: 90386269--90386301 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
90386259 TACATCATAA
*
90386269 TTTAATCACTATGTTCC
1 TTTAATCACGATGTTCC
90386286 TTTAATCACGATGTTC
1 TTTAATCACGATGTTC
90386302 GGAACTAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.21, G:0.09, T:0.45
Consensus pattern (17 bp):
TTTAATCACGATGTTCC
Found at i:90394066 original size:49 final size:50
Alignment explanation
Indices: 90394001--90394125 Score: 164
Period size: 49 Copynumber: 2.5 Consensus size: 50
90393991 AATGCCGATG
* *
90394001 CCATGTCCCAGACATGGTCTTACACTAACTATCGAAAT-TGAG-GCCGACA
1 CCATGTCCCAGACATGGTCTTACACTAACTATC-AAATATCAGTACCGACA
* * * **
90394050 CCATGTCCCAGACATGGTCTTACACTAGCTATCACATATCCGTACCGATG
1 CCATGTCCCAGACATGGTCTTACACTAACTATCAAATATCAGTACCGACA
90394100 CCATGTCCCAGACATGGTCTTACACT
1 CCATGTCCCAGACATGGTCTTACACT
90394126 GACACATCTC
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
48 3 0.04
49 34 0.51
50 30 0.45
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACACTAACTATCAAATATCAGTACCGACA
Found at i:90394180 original size:46 final size:47
Alignment explanation
Indices: 90393994--90394312 Score: 254
Period size: 46 Copynumber: 6.7 Consensus size: 47
90393984 TGGGTGTAAT
* *
90393994 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTATCGAAAT-T-G-A
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAGCT-T--ACATCTCGTA
** *
90394042 GGCCGACACCATGTCCCAGACATGGTCTTACACTAGCTATCACATATCCGTA
1 -GCCGA-TGCATGTCCCAGACATGGTCTTACACTAGCT-T-ACATCT-CGTA
90394094 -CCGATGCCATGTCCCAGACATGGTCTTACACT-GAC--ACATCTCGTA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAG-CTTACATCTCGTA
*
90394139 GCCGATGCATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCG-A
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGTA
* * * *
90394184 GGCCGATACATGTCCCAGACAT-GTCTTACACTAG-TTCTCGTCTC-AA
1 -GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTT-ACATCTCGTA
* * * *
90394230 TGCCAATGCCATGTCCTAGACATGGTCTTACACTAGCTCT-CATAAT-GTG
1 -GCCGATG-CATGTCCCAGACATGGTCTTACACTAGCT-TACAT-CTCGTA
90394279 GCCGATGCATGTCCCAGACAT-GTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGC
90394313 ACACAAATAA
Statistics
Matches: 228, Mismatches: 22, Indels: 43
0.78 0.08 0.15
Matches are distributed among these distances:
44 11 0.05
45 22 0.10
46 74 0.32
47 26 0.11
48 23 0.10
49 39 0.17
50 31 0.14
51 1 0.00
52 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGTA
Found at i:90394258 original size:94 final size:94
Alignment explanation
Indices: 90394050--90394317 Score: 284
Period size: 94 Copynumber: 2.9 Consensus size: 94
90394040 GAGGCCGACA
*
90394050 CCATGTCCCAGACATGGTCTTACACTAGCTATCACATATCCGTA--CCGATGCCATGTCCCAGAC
1 CCATGTCCCAGACATGGTCTTACACTAGCTAT-ACATAT-CG-AGGCCGAT-ACATGTCCCAGAC
* *
90394113 ATGGTCTTACACT-GACACATCTCGTAGCCGATG
62 AT-GTCTTACACTAGACACATCTCATAGCCAATG
* *
90394146 -CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTCGAGGCCGATACATGTCCCAGACATGT
1 CCATGTCCCAGACATGGTCTTACACTAGCTATACATATCGAGGCCGATACATGTCCCAGACATGT
* * *
90394208 CTTACACTAGTTCTCGTCTCA-ATGCCAATG
66 CTTACACTAG-ACACATCTCATA-GCCAATG
* * * *
90394238 CCATGTCCTAGACATGGTCTTACACTAGCTCT-CATAAT-GTGGCCGATGCATGTCCCAGACATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTATACAT-ATCGAGGCCGATACATGTCCCAGACATG
90394301 TCTTACACTAGCACACA
65 TCTTACACTAG-ACACA
90394318 AATAACCCAA
Statistics
Matches: 146, Mismatches: 17, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
90 11 0.08
91 18 0.12
92 22 0.15
93 14 0.10
94 65 0.45
95 16 0.11
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (94 bp):
CCATGTCCCAGACATGGTCTTACACTAGCTATACATATCGAGGCCGATACATGTCCCAGACATGT
CTTACACTAGACACATCTCATAGCCAATG
Found at i:90394294 original size:140 final size:142
Alignment explanation
Indices: 90393994--90394310 Score: 369
Period size: 140 Copynumber: 2.2 Consensus size: 142
90393984 TGGGTGTAAT
90393994 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTATCGAAATTGAGGCCGACACCATGTCCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAACTATC-AAATTGAGGCCGACACCATGTCCC
** *
90394059 AGACATGGTCTTACACTAGCTATCACATATCCGTACCGATGCCATGTCCCAGACATGGTCTTACA
63 AGACATGGTCTTACACTAGCTATCACATATCAATACCAATGCCATGTCCCAGACATGGTCTTACA
*
90394124 CTGACACATCTCGTA
128 CTGACACATATCGTA
** * *
90394139 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-T-ACATCTCGAGGCCGATA-CATGTCCCA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAACTATCAAAT-T-GAGGCCGACACCATGTCCCA
* * * * *
90394201 GACAT-GTCTTACACTAG-T-TCTCGTCTCAATGCCAATGCCATGTCCTAGACATGGTCTTACAC
64 GACATGGTCTTACACTAGCTATCACATATCAATACCAATGCCATGTCCCAGACATGGTCTTACAC
* * *
90394263 TAGCTCTCATAAT-GTG
129 T-G-ACACAT-ATCGTA
90394279 GCCGATGCATGTCCCAGACATGTCTTACACTA
1 GCCGATGCATGTCCCAGACATGTCTTACACTA
90394311 GCACACAAAT
Statistics
Matches: 150, Mismatches: 17, Indels: 15
0.82 0.09 0.08
Matches are distributed among these distances:
138 37 0.25
139 2 0.01
140 52 0.35
141 16 0.11
142 10 0.07
143 12 0.08
144 14 0.09
145 7 0.05
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (142 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAACTATCAAATTGAGGCCGACACCATGTCCCAGA
CATGGTCTTACACTAGCTATCACATATCAATACCAATGCCATGTCCCAGACATGGTCTTACACTG
ACACATATCGTA
Found at i:90396069 original size:19 final size:19
Alignment explanation
Indices: 90396044--90396081 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
90396034 GTTTACTCTT
*
90396044 TTTTTTTTTCCATTTTGGCA
1 TTTTTTTGT-CATTTTGGCA
90396064 TTTTTTTGTCATTTTGGC
1 TTTTTTTGTCATTTTGGC
90396082 TCTCAACCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.08, C:0.13, G:0.13, T:0.66
Consensus pattern (19 bp):
TTTTTTTGTCATTTTGGCA
Found at i:90403494 original size:65 final size:65
Alignment explanation
Indices: 90403390--90403522 Score: 221
Period size: 65 Copynumber: 2.0 Consensus size: 65
90403380 TAAATAAACA
* * *
90403390 AACAAACATGATCAGAAATTTACCTATTCTGTTCAATAATAATTCTCTTCCAATTTGCAACCATT
1 AACAAACATAATCAGAAATTTACCTATTCTGTTCAATAATAATCCTCCTCCAATTTGCAACCATT
* *
90403455 AACAAACATAATCAGAAATTTACCTGTTCTGTTCAATAATAATCCTCCTCCAATTTGCAACCGTT
1 AACAAACATAATCAGAAATTTACCTATTCTGTTCAATAATAATCCTCCTCCAATTTGCAACCATT
90403520 AAC
1 AAC
90403523 TATTAGGGGT
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.33
Consensus pattern (65 bp):
AACAAACATAATCAGAAATTTACCTATTCTGTTCAATAATAATCCTCCTCCAATTTGCAACCATT
Found at i:90406453 original size:17 final size:19
Alignment explanation
Indices: 90406431--90406466 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
90406421 ACTTAATTGT
90406431 TTTCATCT-TCTC-CTTCA
1 TTTCATCTCTCTCTCTTCA
90406448 TTTCATCTCTCTCTCTTCA
1 TTTCATCTCTCTCTCTTCA
90406467 ATAATGAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.47
18 4 0.24
19 5 0.29
ACGTcount: A:0.11, C:0.36, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTCATCTCTCTCTCTTCA
Found at i:90409025 original size:13 final size:13
Alignment explanation
Indices: 90409007--90409034 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
90408997 ATATCGAATA
90409007 ATCCATTAAACAC
1 ATCCATTAAACAC
90409020 ATCCATTAAACAC
1 ATCCATTAAACAC
90409033 AT
1 AT
90409035 ACTTATTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.25
Consensus pattern (13 bp):
ATCCATTAAACAC
Found at i:90422861 original size:18 final size:19
Alignment explanation
Indices: 90422833--90422868 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
90422823 AAATAATAGT
90422833 AAAAATATAATAAAATAAA
1 AAAAATATAATAAAATAAA
90422852 AAAAAT-TAATAAAATAA
1 AAAAATATAATAAAATAA
90422869 TAAGAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAAATATAATAAAATAAA
Found at i:90423443 original size:19 final size:19
Alignment explanation
Indices: 90423393--90423445 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
90423383 AATTTCAAAA
*
90423393 AAAAAAACAAAAAGAATTAT
1 AAAAATACAAAAA-AATTAT
* ** *
90423413 AAATATTTAAAAAAGTTAT
1 AAAAATACAAAAAAATTAT
90423432 AAAAATACAAAAAA
1 AAAAATACAAAAAA
90423446 TTCCCAAAAA
Statistics
Matches: 25, Mismatches: 8, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
19 16 0.64
20 9 0.36
ACGTcount: A:0.72, C:0.04, G:0.04, T:0.21
Consensus pattern (19 bp):
AAAAATACAAAAAAATTAT
Found at i:90426579 original size:9 final size:9
Alignment explanation
Indices: 90426565--90426594 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
90426555 TCTTCCCTAC
90426565 ATTCTTGAA
1 ATTCTTGAA
90426574 ATTCTTGAA
1 ATTCTTGAA
90426583 ATTCTTGAA
1 ATTCTTGAA
90426592 ATT
1 ATT
90426595 AAAGGCGAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.47
Consensus pattern (9 bp):
ATTCTTGAA
Found at i:90428944 original size:44 final size:44
Alignment explanation
Indices: 90428802--90428960 Score: 166
Period size: 43 Copynumber: 3.7 Consensus size: 44
90428792 AGCTCGTACA
* * *
90428802 ATGCCAACGTCCTAGACGTGGTCTTACATGT-AATCA-AATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCACAA-ATCG
** * * *
90428845 ATGCCATTGTCCTAGAAAGGGTCTTACACG-AAAT--CAAATACG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCACAAAT-CG
*
90428887 ATGCCAAAGTCCCAGACATGGTCTTACACGTAAATCACAAATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCACAAATCG
* *
90428931 ATGCCAACTTCCCAGACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACATGGTCTTACACG
90428961 GTAACACATA
Statistics
Matches: 96, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
41 2 0.02
42 29 0.30
43 31 0.32
44 29 0.30
45 5 0.05
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCACAAATCG
Found at i:90428954 original size:86 final size:85
Alignment explanation
Indices: 90428802--90428960 Score: 198
Period size: 86 Copynumber: 1.9 Consensus size: 85
90428792 AGCTCGTACA
* * * * * *
90428802 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAAATATCGATGCCATTGTCCTAGAAAGGGT
1 ATGCCAAAGTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGAAAGGGT
90428867 CTTACACGAAATCAAATACG
66 CTTACACGAAATCAAATACG
*
90428887 ATGCCAAAGTCCCAGACATGGTCTTACACGTAAATCACAA-ATCGATGCCAACT-TCCCAG-ACG
1 ATGCCAAAGTCCCAGACATGGTCTTACACGT-AATCA-AATATCGATGCC-ACTGTCCCAGAAAG
90428949 TGGTCTTACACG
63 -GGTCTTACACG
90428961 GTAACACATA
Statistics
Matches: 63, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
85 29 0.46
86 30 0.48
87 4 0.06
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (85 bp):
ATGCCAAAGTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGAAAGGGT
CTTACACGAAATCAAATACG
Found at i:90436518 original size:15 final size:15
Alignment explanation
Indices: 90436498--90436535 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
90436488 ACTAACCATT
* *
90436498 AATTCAATTAATTAA
1 AATTCAATAAAATAA
90436513 AATTC-ATAAAATAA
1 AATTCAATAAAATAA
90436527 AATTCAATA
1 AATTCAATA
90436536 TAAAAATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.34
Consensus pattern (15 bp):
AATTCAATAAAATAA
Found at i:90442749 original size:16 final size:16
Alignment explanation
Indices: 90442720--90442754 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
90442710 TTTTAAAAAC
* *
90442720 TTTTATAATGCTAATA
1 TTTTAAAATACTAATA
90442736 TTTTAAAATACTAATA
1 TTTTAAAATACTAATA
90442752 TTT
1 TTT
90442755 ATGATTATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.40, C:0.06, G:0.03, T:0.51
Consensus pattern (16 bp):
TTTTAAAATACTAATA
Found at i:90442838 original size:16 final size:17
Alignment explanation
Indices: 90442807--90442840 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
90442797 TCAAAAGGAA
*
90442807 AAAATGATATTAAAAAT
1 AAAATAATATTAAAAAT
90442824 AAAATAATA-TAAAAAT
1 AAAATAATATTAAAAAT
90442840 A
1 A
90442841 TATCAATATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (17 bp):
AAAATAATATTAAAAAT
Found at i:90480450 original size:30 final size:31
Alignment explanation
Indices: 90480402--90480468 Score: 118
Period size: 30 Copynumber: 2.2 Consensus size: 31
90480392 TTAATATGAG
90480402 TTAATACAAAACATCTATTATTTTAACTGTA
1 TTAATACAAAACATCTATTATTTTAACTGTA
*
90480433 TTAATACAAAA-ATCTATTGTTTTAACTGTA
1 TTAATACAAAACATCTATTATTTTAACTGTA
90480463 TTAATA
1 TTAATA
90480469 TGATTTTATT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
30 24 0.69
31 11 0.31
ACGTcount: A:0.42, C:0.10, G:0.04, T:0.43
Consensus pattern (31 bp):
TTAATACAAAACATCTATTATTTTAACTGTA
Found at i:90484030 original size:14 final size:15
Alignment explanation
Indices: 90484011--90484039 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
90484001 ATTTAACCTT
90484011 ATTTTAAT-ATAAAA
1 ATTTTAATCATAAAA
90484025 ATTTTAATCATAAAA
1 ATTTTAATCATAAAA
90484040 CTTAATAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (15 bp):
ATTTTAATCATAAAA
Found at i:90485128 original size:15 final size:15
Alignment explanation
Indices: 90485108--90485142 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
90485098 AAGATTAACT
90485108 AGTTAAGGTTAATTA
1 AGTTAAGGTTAATTA
*
90485123 AGTTAAGTTTAATTA
1 AGTTAAGGTTAATTA
90485138 A-TTAA
1 AGTTAA
90485143 ATATTAAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (15 bp):
AGTTAAGGTTAATTA
Found at i:90488853 original size:40 final size:40
Alignment explanation
Indices: 90488808--90489244 Score: 838
Period size: 40 Copynumber: 10.9 Consensus size: 40
90488798 ATAACCACAA
* * * *
90488808 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
90488848 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
90488888 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
90488928 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
90488968 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
90489008 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
90489048 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
90489088 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
90489128 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
90489168 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
90489208 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
90489245 ATGCTCATGC
Statistics
Matches: 393, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 393 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:90497351 original size:40 final size:40
Alignment explanation
Indices: 90497291--90497633 Score: 587
Period size: 40 Copynumber: 8.6 Consensus size: 40
90497281 CAAGCTCAAT
* * * *
90497291 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* *
90497331 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
90497371 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* *
90497411 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
90497451 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* *
90497491 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
90497531 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
90497571 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
90497611 TGCCTTCGGGTCTTAGCCCGGAT
1 TGCCTTCGGGTCTTAGCCCGGAT
90497634 GTATTCAAAT
Statistics
Matches: 286, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 286 1.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
Found at i:90497402 original size:80 final size:80
Alignment explanation
Indices: 90497287--90497633 Score: 649
Period size: 80 Copynumber: 4.3 Consensus size: 80
90497277 ACCACAAGCT
* * * *
90497287 CAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGG
1 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
90497352 ATATATCAACTTGCA
66 ATATATCAACTTGCA
90497367 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
1 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
90497432 ATATATCAACTTGCA
66 ATATATCAACTTGCA
90497447 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
1 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
90497512 ATATATCAACTTGCA
66 ATATATCAACTTGCA
90497527 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
1 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
90497592 ATATATCAACTTGCA
66 ATATATCAACTTGCA
*
90497607 CAAATGCCTTCGGGTCTTAGCCCGGAT
1 CAATTGCCTTCGGGTCTTAGCCCGGAT
90497634 GTATTCAAAT
Statistics
Matches: 262, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 262 1.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (80 bp):
CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
ATATATCAACTTGCA
Found at i:90501313 original size:14 final size:16
Alignment explanation
Indices: 90501287--90501318 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
90501277 AAATAAGAAC
90501287 AAGTACAATAAT-AGA
1 AAGTACAATAATAAGA
90501302 AAGTAC-ATAATAAGA
1 AAGTACAATAATAAGA
90501317 AA
1 AA
90501319 TAATTCAGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.62, C:0.06, G:0.12, T:0.19
Consensus pattern (16 bp):
AAGTACAATAATAAGA
Found at i:90516548 original size:27 final size:27
Alignment explanation
Indices: 90516518--90516724 Score: 333
Period size: 27 Copynumber: 7.6 Consensus size: 27
90516508 ATATTAAGTC
* *
90516518 CGCACACTCAGTGCTATATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
90516545 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCA-ACT
90516573 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
90516600 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCA-ACT
90516628 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
90516655 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCA-ACT
*
90516683 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
90516710 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
90516725 GCACAATTTA
Statistics
Matches: 168, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
27 90 0.54
28 78 0.46
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:90516579 original size:55 final size:55
Alignment explanation
Indices: 90516518--90516724 Score: 387
Period size: 55 Copynumber: 3.8 Consensus size: 55
90516508 ATATTAAGTC
* *
90516518 CGCACACTCAGTGCTATATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
90516573 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
90516628 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
*
90516683 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
90516725 GCACAATTTA
Statistics
Matches: 149, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 149 1.00
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.28
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
Found at i:90518737 original size:46 final size:46
Alignment explanation
Indices: 90518619--90518729 Score: 177
Period size: 46 Copynumber: 2.4 Consensus size: 46
90518609 TCTGAACTCA
* *
90518619 TTGAGTTGAGCCCGAGTTCACTTATGGATGCGAGCACCCGAGCTCG
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCG
* * *
90518665 CTGAGCTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCG
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCG
90518711 TTGAGTTGAGTCCGAGTTC
1 TTGAGTTGAGTCCGAGTTC
90518730 GTATATGGGT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 58 1.00
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (46 bp):
TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCG
Found at i:90521009 original size:138 final size:138
Alignment explanation
Indices: 90520588--90521276 Score: 941
Period size: 138 Copynumber: 5.1 Consensus size: 138
90520578 TAGAAAAATG
* * * *
90520588 AATTATATTCTTT-TAGAAAAAA-ATTAATTTCCATATCTTTTATATTTTGACTAAAATTATTTA
1 AATTATATTCTTTCCA-AAAAAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTA
* * * * *
90520651 ATGTAAC----TATTTTAATAAATTCAGTAAAATATATACAATTAATAGTTTATATGAATCAAAT
65 ATATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
90520712 TCATATATT
130 TCATATATT
** **
90520721 AATTATATTCTTT-CAAACGGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTA
1 AATTATATTCTTTCCAAA-AAAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTA
* * ** *
90520785 TTATAACTATTTATATTAATAAATTTAGTAATATATATA-AA-TAATATTTTGTATGAATCAAAT
65 ATATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
90520848 TCATATATT
130 TCATATATT
* * * * * *
90520857 AATTATATTATTTCCAAAAAAATAATAATTTTCATATCTTGTATATTTTGATTGAAATTAATTAA
1 AATTATATTCTTTCCAAAAAAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTAA
* *
90520922 TATAATTGTGTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
*
90520987 CATAAATT
131 CATATATT
* *
90520995 AATTATATTCTTTCCAAAAGAATATTAATTCCCATGTCTTTTATATTTTGACTGAAATTAATTAA
1 AATTATATTCTTTCCAAAAAAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTAA
*
90521060 TATAACTGTTTATATTAATAAATTCGGAAAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
90521125 CATATATT
131 CATATATT
* * * * *
90521133 AATTATATTATTTCGAAAATAATATTAACTTCCATGTCTTTTATA-TTTGACTGAAGTTAATTAA
1 AATTATATTCTTTCCAAAAAAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTAA
* * *
90521197 TATAACTGTTTATATTAAAAAATTCGGTAAAATATATAAAATTAATATTTTGCATGAATCAAATT
66 TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
90521262 CATATATT
131 CATATATT
90521270 -ATTATAT
1 AATTATAT
90521277 CTATGTTCTC
Statistics
Matches: 494, Mismatches: 53, Indels: 15
0.88 0.09 0.03
Matches are distributed among these distances:
132 2 0.00
133 16 0.03
134 43 0.09
136 117 0.24
137 95 0.19
138 221 0.45
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.45
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAAAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTAA
TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATT
Found at i:90521276 original size:274 final size:272
Alignment explanation
Indices: 90520588--90521276 Score: 969
Period size: 274 Copynumber: 2.5 Consensus size: 272
90520578 TAGAAAAATG
* * * *
90520588 AATTATATTCTTTTAGAAAAAA-ATTAATTTCCATATCTTTTATATTTTGACTAAAATTATTTAA
1 AATTATATT-ATTTCGAAAAAATATTAATTTCCATATCTTTTATATTTTGACTGAAATTAATTAA
* * * * *
90520652 TGTAAC---TATTTTAATAAATTCAGTAAAATATATACAATTAATAGTTTATATGAATCAAATTC
65 TATAACTGTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTC
* *
90520714 ATATATTAATTATATTCTTTCAAACGGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAAT
130 ATATATTAATTATATTCTTTCAAACAGAATATTAATTCCCATGTCTTTTATATTTTGACCAAAAT
* * * *
90520779 TAATTATTATAACTATTTATATTAATAAATTTAGTAATATATATAAATAATATTTTGTATGAATC
195 TAATTAATATAACTATTTATATTAATAAATTCAGAAAAATATATAAATAATATTTTGTATGAATC
90520844 AAATTCATATATT
260 AAATTCATATATT
* * * * *
90520857 AATTATATTATTTCCAAAAAAATAATAATTTTCATATCTTGTATATTTTGATTGAAATTAATTAA
1 AATTATATTATTT-CGAAAAAATATTAATTTCCATATCTTTTATATTTTGACTGAAATTAATTAA
*
90520922 TATAATTGTGTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
65 TATAACTGT-TATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
* **
90520987 CATAAATTAATTATATTCTTTCCAAA-AGAATATTAATTCCCATGTCTTTTATATTTTGACTGAA
129 CATATATTAATTATATTCTTT-CAAACAGAATATTAATTCCCATGTCTTTTATATTTTGACCAAA
* *
90521051 ATTAATTAATATAACTGTTTATATTAATAAATTCGGAAAAATATATACAATTAATATTTTGTATG
193 ATTAATTAATATAACTATTTATATTAATAAATTCAGAAAAATATATA-AA-TAATATTTTGTATG
90521116 AATCAAATTCATATATT
256 AATCAAATTCATATATT
* * *
90521133 AATTATATTATTTCGAAAATAATATTAACTTCCATGTCTTTTATA-TTTGACTGAAGTTAATTAA
1 AATTATATTATTTCGAAAA-AATATTAATTTCCATATCTTTTATATTTTGACTGAAATTAATTAA
* * *
90521197 TATAACTGTTTATATTAAAAAATTCGGTAAAATATATAAAATTAATATTTTGCATGAATCAAATT
65 TATAACTG-TTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
90521262 CATATATT-ATTATAT
129 CATATATTAATTATAT
90521277 CTATGTTCTC
Statistics
Matches: 370, Mismatches: 39, Indels: 17
0.87 0.09 0.04
Matches are distributed among these distances:
268 3 0.01
269 15 0.04
270 40 0.11
274 153 0.41
275 94 0.25
276 65 0.18
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.45
Consensus pattern (272 bp):
AATTATATTATTTCGAAAAAATATTAATTTCCATATCTTTTATATTTTGACTGAAATTAATTAAT
ATAACTGTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCA
TATATTAATTATATTCTTTCAAACAGAATATTAATTCCCATGTCTTTTATATTTTGACCAAAATT
AATTAATATAACTATTTATATTAATAAATTCAGAAAAATATATAAATAATATTTTGTATGAATCA
AATTCATATATT
Found at i:90525189 original size:87 final size:87
Alignment explanation
Indices: 90525038--90525385 Score: 687
Period size: 87 Copynumber: 4.0 Consensus size: 87
90525028 GACCATTCCT
*
90525038 TAGTCAACAGTACACCTTATACATTACCTAATTAACTAACCACATATCAATACCATGTCATTAAA
1 TAGTTAACAGTACACCTTATACATTACCTAATTAACTAACCACATATCAATACCATGTCATTAAA
90525103 CAACTATCAACGCAACACATAA
66 CAACTATCAACGCAACACATAA
90525125 TAGTTAACAGTACACCTTATACATTACCTAATTAACTAACCACATATCAATACCATGTCATTAAA
1 TAGTTAACAGTACACCTTATACATTACCTAATTAACTAACCACATATCAATACCATGTCATTAAA
90525190 CAACTATCAACGCAACACATAA
66 CAACTATCAACGCAACACATAA
90525212 TAGTTAACAGTACACCTTATACATTACCTAATTAACTAACCACATATCAATACCATGTCATTAAA
1 TAGTTAACAGTACACCTTATACATTACCTAATTAACTAACCACATATCAATACCATGTCATTAAA
90525277 CAACTATCAACGCAACACATAA
66 CAACTATCAACGCAACACATAA
90525299 TAGTTAACAGTACACCTTATACATTACCTAATTAACTAACCACATATCAATACCATGTCATTAAA
1 TAGTTAACAGTACACCTTATACATTACCTAATTAACTAACCACATATCAATACCATGTCATTAAA
90525364 CAACTATCAACGCAACACATAA
66 CAACTATCAACGCAACACATAA
90525386 AGACCTAATT
Statistics
Matches: 260, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 260 1.00
ACGTcount: A:0.44, C:0.26, G:0.05, T:0.26
Consensus pattern (87 bp):
TAGTTAACAGTACACCTTATACATTACCTAATTAACTAACCACATATCAATACCATGTCATTAAA
CAACTATCAACGCAACACATAA
Found at i:90526433 original size:43 final size:44
Alignment explanation
Indices: 90526373--90526504 Score: 148
Period size: 43 Copynumber: 3.0 Consensus size: 44
90526363 CACATAAATC
*
90526373 ATACAATGCCAACGTCCCAGTCGTGGTCTTACATGTAATCACAT
1 ATACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACAT
* * * *
90526417 ATA-GATGCC-ACTGTCCCAAACAG-GATCTTACACGTAATCACAT
1 ATACAATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATCACAT
*
90526460 A-ACAATGCCAACGTCCCAGACGTGGTATTACATG-AATACACAT
1 ATACAATGCCAACGTCCCAGACGTGGTCTTACATGTAAT-CACAT
90526503 AT
1 AT
90526505 CGAAATTCTA
Statistics
Matches: 71, Mismatches: 10, Indels: 14
0.75 0.11 0.15
Matches are distributed among these distances:
42 7 0.10
43 58 0.82
44 6 0.08
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (44 bp):
ATACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACAT
Found at i:90526824 original size:15 final size:15
Alignment explanation
Indices: 90526804--90526839 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
90526794 GTTCTTGATT
90526804 TTCAAATTAAACCCA
1 TTCAAATTAAACCCA
*
90526819 TTCAAATTAAACTCA
1 TTCAAATTAAACCCA
90526834 TTCAAA
1 TTCAAA
90526840 CATAATTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.47, C:0.22, G:0.00, T:0.31
Consensus pattern (15 bp):
TTCAAATTAAACCCA
Found at i:90530853 original size:51 final size:51
Alignment explanation
Indices: 90530770--90530907 Score: 165
Period size: 51 Copynumber: 2.7 Consensus size: 51
90530760 GATGCCCGAC
*
90530770 GGCCTGCACATAGTACCACCCTTGT-AGTCAAAGCTACCTTCTTCACA-A-AGT
1 GGCCTGCACATAGTACCACACTTGTGA-TCAAAGCTACC-T-TTCACACATAGT
* * *
90530821 GGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCACACATAGT
1 GGCCTGCACATAGTACCACACTTGTGATCAAAGCTACCTTTCACACATAGT
* * *
90530872 GGCCTGCACTTAGTACCACACATGTGATCGAAGCTA
1 GGCCTGCACATAGTACCACACTTGTGATCAAAGCTA
90530908 TCGGGTACAC
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
49 6 0.08
50 2 0.03
51 66 0.88
52 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (51 bp):
GGCCTGCACATAGTACCACACTTGTGATCAAAGCTACCTTTCACACATAGT
Found at i:90530908 original size:51 final size:52
Alignment explanation
Indices: 90530770--90530988 Score: 164
Period size: 51 Copynumber: 4.3 Consensus size: 52
90530760 GATGCCCGAC
* * * * * * * *
90530770 GGCCTGCACATAGTACCACCCTTGT-AGTCAAAGCTACCTTC-TTCACAAAGT
1 GGCCTGCACTTAGTACCACACATGTGA-CCAAAGCTATCGTCGTACACATAGT
* * * *
90530821 GGCCTTCACATAGTACCACACTTGTGACCAAAGCTATC-T-TTCACACATAGT
1 GGCCTGCACTTAGTACCACACATGTGACCAAAGCTATCGTCGT-ACACATAGT
* * *
90530872 GGCCTGCACTTAGTACCACACATGTGATCGAAGCTATCG-GGTACACATAGT
1 GGCCTGCACTTAGTACCACACATGTGACCAAAGCTATCGTCGTACACATAGT
* * * * * * *
90530923 AGCCTACACTTAGTACTACACATGCGACCTAA-CTATC-TGGTACACGTAGT
1 GGCCTGCACTTAGTACCACACATGTGACCAAAGCTATCGTCGTACACATAGT
*
90530973 AGCCTGCACTTAGTAC
1 GGCCTGCACTTAGTAC
90530989 TATACACGTG
Statistics
Matches: 142, Mismatches: 20, Indels: 13
0.81 0.11 0.07
Matches are distributed among these distances:
50 33 0.23
51 107 0.75
52 2 0.01
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (52 bp):
GGCCTGCACTTAGTACCACACATGTGACCAAAGCTATCGTCGTACACATAGT
Found at i:90530973 original size:50 final size:51
Alignment explanation
Indices: 90530813--90531050 Score: 192
Period size: 51 Copynumber: 4.7 Consensus size: 51
90530803 CTACCTTCTT
* * * * * * * **
90530813 CACAAAGTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATC-TTTCA
1 CACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAGCTATCGGGT-A
* * * *
90530864 CACATAGTGGCCTGCACTTAGTACCACACATGTGATCGAAGCTATCGGGTA
1 CACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAGCTATCGGGTA
* * *
90530915 CACATAGTAGCCTACACTTAGTACTACACATGCGACCTAA-CTATCTGGTA
1 CACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAGCTATCGGGTA
* * * * * *****
90530965 CACGTAGTAGCCTGCACTTAGTACTATACACGTGACCTAAAACTGTTTTAAA
1 CACATAGTAGCCTGCACTTAGTACTACACATGTGACCT-AAGCTATCGGGTA
* *
90531017 CACATTGTAGCCTGCACATAGTACTACACATGTG
1 CACATAGTAGCCTGCACTTAGTACTACACATGTG
90531051 TTCTCACAAC
Statistics
Matches: 154, Mismatches: 30, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
50 42 0.27
51 77 0.50
52 35 0.23
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (51 bp):
CACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAGCTATCGGGTA
Found at i:90534383 original size:48 final size:48
Alignment explanation
Indices: 90534327--90534460 Score: 169
Period size: 48 Copynumber: 2.8 Consensus size: 48
90534317 AGATCCCGTA
* * * **
90534327 TAAGACCATATCTAGGATATGACATCAGCATCGATATGTGACCCCATG
1 TAAGACCATGTCTAGGACATGGCATTGGCATCGATATGTGACCCCATG
* * * * *
90534375 TAAGACCATGTATGGGACATGGCATTGGCACCGTTATGTGATCCCATG
1 TAAGACCATGTCTAGGACATGGCATTGGCATCGATATGTGACCCCATG
*
90534423 TAAGATCATGTCTAGGACATGGCATTGGCATCGATATG
1 TAAGACCATGTCTAGGACATGGCATTGGCATCGATATG
90534461 AGAACATCGT
Statistics
Matches: 71, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 71 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (48 bp):
TAAGACCATGTCTAGGACATGGCATTGGCATCGATATGTGACCCCATG
Found at i:90537423 original size:27 final size:27
Alignment explanation
Indices: 90537401--90537476 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
90537391 TCATCCTATA
*
90537401 TTTACTATCCTGATGGACTATCCCGTG
1 TTTACTATCCTGATGGACTATCCCATG
* * * *
90537428 TTTACTGTCTTGATGAAATATCCCATG
1 TTTACTATCCTGATGGACTATCCCATG
*
90537455 TTTACTATCCCGATGGACTATC
1 TTTACTATCCTGATGGACTATC
90537477 TATGTTGTCG
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (27 bp):
TTTACTATCCTGATGGACTATCCCATG
Found at i:90539399 original size:80 final size:80
Alignment explanation
Indices: 90539266--90539426 Score: 295
Period size: 80 Copynumber: 2.0 Consensus size: 80
90539256 CTGTGACAGC
* *
90539266 CCAAAATTGACCCTAGTCGGGAAGTGGTTTCGGGACCGCTAAACCGAGTCACCGAAATGTTTGAA
1 CCAAAATTGACCCTAGCCGGGAAGTGGTTTCGGGACCGCTAAACCGAGTCACCGAAAGGTTTGAA
90539331 TGTGATATTTATTGT
66 TGTGATATTTATTGT
90539346 CCAAAATTGACCCTAGCCGGGAAGTGGTTTCGGGACCGCTAAACCGAGTCACCGAAAGGTTTGAA
1 CCAAAATTGACCCTAGCCGGGAAGTGGTTTCGGGACCGCTAAACCGAGTCACCGAAAGGTTTGAA
*
90539411 TGTGATGTTTATTGT
66 TGTGATATTTATTGT
90539426 C
1 C
90539427 TAGAATATGT
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 78 1.00
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (80 bp):
CCAAAATTGACCCTAGCCGGGAAGTGGTTTCGGGACCGCTAAACCGAGTCACCGAAAGGTTTGAA
TGTGATATTTATTGT
Found at i:90541200 original size:79 final size:81
Alignment explanation
Indices: 90541064--90541248 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
90541054 TTGAATGATG
* *
90541064 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
90541128 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
90541143 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
90541205 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
90541223 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
90541249 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:90541262 original size:40 final size:41
Alignment explanation
Indices: 90541064--90541248 Score: 222
Period size: 40 Copynumber: 4.6 Consensus size: 41
90541054 TTGAATGATG
* * *
90541064 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
90541104 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-AT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
90541144 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
90541183 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
90541224 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
90541249 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:90541270 original size:79 final size:79
Alignment explanation
Indices: 90541117--90541281 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
90541107 GGACTAAGAT
* * **
90541117 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
90541182 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
90541196 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* * *
90541259 TATAT-CTGGTTAAATT
63 TAAATCCGGGTTAAATC
90541275 CCGAAGG
1 CCGAAGG
90541282 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:90547871 original size:20 final size:20
Alignment explanation
Indices: 90547809--90547873 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 20
90547799 TGGTTGAACA
90547809 TCCGAACTCGTTGAGTTGAG
1 TCCGAACTCGTTGAGTTGAG
** * *
90547829 TCCGAGTTCACTT-A-TGGATG
1 TCCGAACTC-GTTGAGTTGA-G
90547849 TCCGAACTCGTTGAGTTGAG
1 TCCGAACTCGTTGAGTTGAG
90547869 TCCGA
1 TCCGA
90547874 GTTCGTGAAA
Statistics
Matches: 33, Mismatches: 8, Indels: 8
0.67 0.16 0.16
Matches are distributed among these distances:
19 5 0.15
20 23 0.70
21 5 0.15
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.31
Consensus pattern (20 bp):
TCCGAACTCGTTGAGTTGAG
Found at i:90554348 original size:46 final size:46
Alignment explanation
Indices: 90554298--90554659 Score: 381
Period size: 46 Copynumber: 7.8 Consensus size: 46
90554288 TGATTGAGCA
90554298 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
90554344 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
90554389 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
90554437 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
90554482 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
90554530 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
90554575 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
90554623 -CCTGAGCTCGTTGAGTTGAGTCCAAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
90554660 GCGGGTTACA
Statistics
Matches: 267, Mismatches: 21, Indels: 56
0.78 0.06 0.16
Matches are distributed among these distances:
42 6 0.02
43 15 0.06
45 11 0.04
46 118 0.44
47 87 0.33
48 9 0.03
50 15 0.06
51 6 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:90554454 original size:93 final size:93
Alignment explanation
Indices: 90554295--90554652 Score: 682
Period size: 93 Copynumber: 3.8 Consensus size: 93
90554285 GGATGATTGA
90554295 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
90554360 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
90554388 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
90554453 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
90554481 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
90554546 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
90554574 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC-GAACTCGTTGAG
*
90554638 TTGAGTCCAAGTTCG
65 TTGAGTCCGAGTTCG
90554653 CTTATGGGCG
Statistics
Matches: 262, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
92 2 0.01
93 260 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:90556012 original size:22 final size:22
Alignment explanation
Indices: 90555963--90556004 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
90555953 GTGGGGGCGT
90555963 TACA-CACATAGCCATAAACAG
1 TACAGCACATAGCCATAAACAG
*
90555984 TACAGCACATAGCCGTAAACA
1 TACAGCACATAGCCATAAACA
90556005 TCGCAGCAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.45, C:0.29, G:0.12, T:0.14
Consensus pattern (22 bp):
TACAGCACATAGCCATAAACAG
Found at i:90556241 original size:22 final size:22
Alignment explanation
Indices: 90556207--90556271 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
90556197 ACAAATATGT
*
90556207 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* * *
90556229 TTGGCATAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
90556251 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
90556272 AATAATTAGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:90556472 original size:41 final size:41
Alignment explanation
Indices: 90556415--90556535 Score: 161
Period size: 41 Copynumber: 3.0 Consensus size: 41
90556405 AAAGCCATCG
* *
90556415 GTGGATCCACGGTCGTCAAGCAACCATGTGATCATTAATCA
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCATCAATCA
* * * *
90556456 GTGGATCCACAGTCGTCAAGCAACCATGGGATCCTCAATCG
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCATCAATCA
* * *
90556497 GTGGATTCACGGTCGTCAATCAACCATGCGATCCTCAAT
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCATCAAT
90556536 TTCTTCCTCC
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 71 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (41 bp):
GTGGATCCACGGTCGTCAAGCAACCATGCGATCATCAATCA
Found at i:90556822 original size:27 final size:26
Alignment explanation
Indices: 90556792--90557004 Score: 160
Period size: 27 Copynumber: 7.9 Consensus size: 26
90556782 GGTAAATCTA
90556792 CAAACTAAGGGTATTTCGATAATTTTG
1 CAAACTAAGGGTATTTCG-TAATTTTG
* * * *
90556819 CAAACCAATGGTATTTTTGTAATTTTT
1 CAAACTAAGGGTA-TTTCGTAATTTTG
* *
90556846 TAAAGTTAAGGGTATTTCGTAATTTTG
1 CAAA-CTAAGGGTATTTCGTAATTTTG
* * *
90556873 TAAA-TCAGGGGTATTTCTGTAATTTTT
1 CAAACT-AAGGGTATTTC-GTAATTTTG
*
90556900 CAAA-TCAAGGGTATTTCAGTAATTTTC
1 CAAACT-AAGGGTATTTC-GTAATTTTG
* * * *
90556927 CAAATTAGGGGTATTTTGGTAATTTTA
1 CAAACTAAGGGTA-TTTCGTAATTTTG
* *
90556954 CAAACTAGGGGTATTTTGGTAATTTTG
1 CAAACTAAGGGTA-TTTCGTAATTTTG
* *
90556981 TAAACCAAGGGTATTTCAGTAATT
1 CAAACTAAGGGTATTTC-GTAATT
90557005 CTACCCTACA
Statistics
Matches: 154, Mismatches: 25, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
25 1 0.01
26 13 0.08
27 126 0.82
28 14 0.09
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.42
Consensus pattern (26 bp):
CAAACTAAGGGTATTTCGTAATTTTG
Found at i:90556894 original size:54 final size:53
Alignment explanation
Indices: 90556792--90557004 Score: 212
Period size: 54 Copynumber: 3.9 Consensus size: 53
90556782 GGTAAATCTA
* * *
90556792 CAAACTAAGGGTATTTCGATAATTTTGCAAACCAATGGTATTTTTGTAATTTTT
1 CAAATTAAGGGTATTTCG-TAATTTTGCAAACCAAGGGTATTTCTGTAATTTTT
* * * *
90556846 TAAAGTTAAGGGTATTTCGTAATTTTGTAAATCAGGGGTATTTCTGTAATTTTT
1 CAAA-TTAAGGGTATTTCGTAATTTTGCAAACCAAGGGTATTTCTGTAATTTTT
* * ** * *
90556900 CAAATCAAGGGTATTTCAGTAATTTTCCAAATTAGGGGTATTT-TGGTAATTTTA
1 CAAATTAAGGGTATTTC-GTAATTTTGCAAACCAAGGGTATTTCT-GTAATTTTT
* * * * *
90556954 CAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATT
1 CAAATTAAGGGTA-TTTCGTAATTTTGCAAACCAAGGGTATTTCTGTAATT
90557005 CTACCCTACA
Statistics
Matches: 131, Mismatches: 23, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
53 13 0.10
54 102 0.78
55 16 0.12
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.42
Consensus pattern (53 bp):
CAAATTAAGGGTATTTCGTAATTTTGCAAACCAAGGGTATTTCTGTAATTTTT
Found at i:90556913 original size:81 final size:81
Alignment explanation
Indices: 90556790--90557004 Score: 242
Period size: 81 Copynumber: 2.7 Consensus size: 81
90556780 TTGGTAAATC
* * * ** **
90556790 TACAAACTAAGGGTATTTC-GATAATTTTGCAAACCAATGGTATTTTTGTAATTTTTTAAAGTTA
1 TACAAACTAGGGGTATTTCTG-TAATTTTTCAAACCAAGGGTATTTCAGTAATTTTCCAAA-TTA
90556854 AGGGTA-TTTCGTAATTT
64 AGGGTATTTTCGTAATTT
** * *
90556871 TGTAAA-TCAGGGGTATTTCTGTAATTTTTCAAATCAAGGGTATTTCAGTAATTTTCCAAATTAG
1 TACAAACT-AGGGGTATTTCTGTAATTTTTCAAACCAAGGGTATTTCAGTAATTTTCCAAATTAA
*
90556935 GGGTATTTTGGTAATTT
65 GGGTATTTTCGTAATTT
90556952 TACAAACTAGGGGTATTT-TGGTAATTTTGT-AAACCAAGGGTATTTCAGTAATT
1 TACAAACTAGGGGTATTTCT-GTAATTTT-TCAAACCAAGGGTATTTCAGTAATT
90557005 CTACCCTACA
Statistics
Matches: 113, Mismatches: 15, Indels: 12
0.81 0.11 0.09
Matches are distributed among these distances:
80 10 0.09
81 100 0.88
82 3 0.03
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.42
Consensus pattern (81 bp):
TACAAACTAGGGGTATTTCTGTAATTTTTCAAACCAAGGGTATTTCAGTAATTTTCCAAATTAAG
GGTATTTTCGTAATTT
Found at i:90557023 original size:27 final size:27
Alignment explanation
Indices: 90556993--90557096 Score: 145
Period size: 27 Copynumber: 3.9 Consensus size: 27
90556983 AACCAAGGGT
* *
90556993 ATTTCAGTAATTCTACCCTACAGTGGC
1 ATTTCAATAATTCTACCCTACAGGGGC
*
90557020 ATTTCAATAATTCTATCCTACAGGGGC
1 ATTTCAATAATTCTACCCTACAGGGGC
90557047 ATTTCAATAATTCTACCCTACAGGGGC
1 ATTTCAATAATTCTACCCTACAGGGGC
* * * *
90557074 ATTTTAGTAAATCTAGCCTACAG
1 ATTTCAATAATTCTACCCTACAG
90557097 ATATGAGATT
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (27 bp):
ATTTCAATAATTCTACCCTACAGGGGC
Found at i:90563514 original size:46 final size:43
Alignment explanation
Indices: 90563446--90563567 Score: 139
Period size: 46 Copynumber: 2.9 Consensus size: 43
90563436 CCTACAATGG
*
90563446 CGATTTTTAGAGAAAAAATATTGTAGTATTCCAATCTTATAGTGAA
1 CGATTTCTAGAGAAAAAATATTGTAGTATTCCAATCTTAT--T-AA
* *
90563492 TGATTTCTAGAGAAAAAATA-T-T-GTATT---ATCTCATTAA
1 CGATTTCTAGAGAAAAAATATTGTAGTATTCCAATCTTATTAA
90563529 CGATTTCTAGAGAAAAAAATATTGTAGTATTCCAATCTT
1 CGATTTCTAGAG-AAAAAATATTGTAGTATTCCAATCTT
90563568 GAAAATTATT
Statistics
Matches: 64, Mismatches: 5, Indels: 16
0.75 0.06 0.19
Matches are distributed among these distances:
37 13 0.20
38 9 0.14
39 1 0.02
40 7 0.11
41 5 0.08
43 5 0.08
44 5 0.08
45 1 0.02
46 18 0.28
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.38
Consensus pattern (43 bp):
CGATTTCTAGAGAAAAAATATTGTAGTATTCCAATCTTATTAA
Found at i:90563891 original size:58 final size:58
Alignment explanation
Indices: 90563787--90563920 Score: 182
Period size: 58 Copynumber: 2.3 Consensus size: 58
90563777 TTTAATTCAT
* *
90563787 ATAATAATTATATTAAGAATTTTATTAAATTATATATTATTTTATTAAATTATATTTA
1 ATAATAATTATATTAAGAATATGATTAAATTATATATTATTTTATTAAATTATATTTA
* * * *
90563845 GTAATAATTATGTTAA-AATATGATTAAATTATTTATTATTTTTATTAAATTATTTTTA
1 ATAATAATTATATTAAGAATATGATTAAATTATATATTA-TTTTATTAAATTATATTTA
90563903 ATAATAATCT-TATTAAGA
1 ATAATAAT-TATATTAAGA
90563921 TTTAATAATA
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
57 19 0.29
58 44 0.68
59 2 0.03
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (58 bp):
ATAATAATTATATTAAGAATATGATTAAATTATATATTATTTTATTAAATTATATTTA
Found at i:90564106 original size:16 final size:16
Alignment explanation
Indices: 90564085--90564136 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
90564075 TAAATTACTG
*
90564085 ATTACAGTTCTATTCC
1 ATTACAGTTCTATTAC
** *
90564101 ATTACAACTCTATTAA
1 ATTACAGTTCTATTAC
* *
90564117 ATTACAGTTCCATTTC
1 ATTACAGTTCTATTAC
90564133 ATTA
1 ATTA
90564137 TATTGAACTA
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.33, C:0.21, G:0.04, T:0.42
Consensus pattern (16 bp):
ATTACAGTTCTATTAC
Found at i:90567297 original size:21 final size:19
Alignment explanation
Indices: 90567273--90567313 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
90567263 TTGTTAATTG
90567273 AAGATTAATGAATAATTAAAT
1 AAGATTAA--AATAATTAAAT
*
90567294 AAGATTAAACTAATTAAAT
1 AAGATTAAAATAATTAAAT
90567313 A
1 A
90567314 TGTTTATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 11 0.58
21 8 0.42
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.32
Consensus pattern (19 bp):
AAGATTAAAATAATTAAAT
Found at i:90568410 original size:19 final size:19
Alignment explanation
Indices: 90568374--90568484 Score: 80
Period size: 19 Copynumber: 5.9 Consensus size: 19
90568364 GTACGGGTTT
*
90568374 ATGCGCTT-ATGCGCCAGG
1 ATGCGCTTCGTGCGCCAGG
*
90568392 ATGCGCTTCGTGCGTCAGG
1 ATGCGCTTCGTGCGCCAGG
* * *
90568411 ATGCACTTCCTGTGCCAGG
1 ATGCGCTTCGTGCGCCAGG
* * * *
90568430 ATACGCTTTGTGCACTAGG
1 ATGCGCTTCGTGCGCCAGG
* * * *
90568449 ATGCACTTTGTGCGACAAG
1 ATGCGCTTCGTGCGCCAGG
* *
90568468 ATGCACTTCATGCGCCA
1 ATGCGCTTCGTGCGCCA
90568485 ATATTCACTA
Statistics
Matches: 70, Mismatches: 22, Indels: 1
0.75 0.24 0.01
Matches are distributed among these distances:
18 8 0.11
19 62 0.89
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.26
Consensus pattern (19 bp):
ATGCGCTTCGTGCGCCAGG
Found at i:90570238 original size:21 final size:21
Alignment explanation
Indices: 90570212--90570267 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
90570202 TGTGGTCCAA
90570212 GGGACACGCCCGTGTGACCCT
1 GGGACACGCCCGTGTGACCCT
*
90570233 GGGACACGTCCGTGTGACCCT
1 GGGACACGCCCGTGTGACCCT
90570254 GGGACACGCCCGTG
1 GGGACACGCCCGTG
90570268 CTGGAGGCCG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.14, C:0.36, G:0.36, T:0.14
Consensus pattern (21 bp):
GGGACACGCCCGTGTGACCCT
Found at i:90570461 original size:42 final size:42
Alignment explanation
Indices: 90570383--90570463 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
90570373 GTGCAGGTTT
* * * *
90570383 CACACGGCTAAGACACATGCCCGTGTTGTAGGCCGTGTGGCA
1 CACACGGCTAAGACACAAGCCCATGTTCTAGCCCGTGTGGCA
*
90570425 CACACGGCTGAGACACAAGCCCATGTCTCT-GCCCGTGTG
1 CACACGGCTAAGACACAAGCCCATGT-TCTAGCCCGTGTG
90570464 CTCAATTCTG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
42 31 0.94
43 2 0.06
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.19
Consensus pattern (42 bp):
CACACGGCTAAGACACAAGCCCATGTTCTAGCCCGTGTGGCA
Found at i:90575374 original size:46 final size:46
Alignment explanation
Indices: 90575307--90576398 Score: 1880
Period size: 46 Copynumber: 23.7 Consensus size: 46
90575297 GCTTTCTGAA
* *
90575307 ATGAAATGAATAAAACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
* * *
90575353 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
** *
90575399 GGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAATGTGAT
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
** *
90575446 ATGAAATGTGTAAGATCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
*
90575492 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAATGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
** *
90575538 ATGAAATGTGTAAGATCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
90575584 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
90575630 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
90575676 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
90575722 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
90575768 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
90575814 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
90575860 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
90575906 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
90575952 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
90575998 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
90576044 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
90576090 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
90576136 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
*
90576182 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAATGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
** *
90576228 ATGAAATGTGTAAGATCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
* *
90576274 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
** * * *
90576320 GGGAAAATGAATAAGACCATGGTTGGAAGATACCATGGCAACATGAC
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
* * * *
90576367 A-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 ATG-AAATGAATAAGACCATGGTTGAAAGATAC
90576399 TATGACATTA
Statistics
Matches: 998, Mismatches: 46, Indels: 4
0.95 0.04 0.00
Matches are distributed among these distances:
46 916 0.92
47 82 0.08
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.22
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
Found at i:90590151 original size:49 final size:47
Alignment explanation
Indices: 90590074--90590208 Score: 146
Period size: 49 Copynumber: 2.8 Consensus size: 47
90590064 AGAAATTTCA
* * *
90590074 GCACTATGTGTGCGAGGTTATGCGGCACTATGTGTGCAA-AAACTACGTG
1 GCACTATGTGTGCGAGATTA-ACAGCACTATGTGTGCAAGAAA--ACGTG
* *
90590123 GCACTATGTGTGCGAGATTACATAGCACTATGTGTGCAAGGAAACGTG
1 GCACTATGTGTGCGAGATTA-ACAGCACTATGTGTGCAAGAAAACGTG
* *
90590171 GCACTATGTGTGCGAATGAGTAAGAGCACTATGTGTGC
1 GCACTATGTGTGCG-A-GATTAACAGCACTATGTGTGC
90590209 GGACCTTTAA
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
48 19 0.25
49 50 0.67
50 6 0.08
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (47 bp):
GCACTATGTGTGCGAGATTAACAGCACTATGTGTGCAAGAAAACGTG
Found at i:90590155 original size:24 final size:24
Alignment explanation
Indices: 90590073--90590209 Score: 98
Period size: 24 Copynumber: 5.6 Consensus size: 24
90590063 AAGAAATTTC
* * *
90590073 AGCACTATGTGTGCGAGGTTATGC
1 AGCACTATGTGTGCGAGATTACGT
* * * *
90590097 GGCACTATGTGTGCAAAAACTACGT
1 AGCACTATGTGTGC-GAGATTACGT
* *
90590122 GGCACTATGTGTGCGAGATTACAT
1 AGCACTATGTGTGCGAGATTACGT
* *
90590146 AGCACTATGTGTGCAAGGA-AACGT
1 AGCACTATGTGTGCGA-GATTACGT
* * *
90590170 GGCACTATGTGTGCGAATGAGTAAG-
1 AGCACTATGTGTGCG-A-GATTACGT
90590195 AGCACTATGTGTGCG
1 AGCACTATGTGTGCG
90590210 GACCTTTAAA
Statistics
Matches: 88, Mismatches: 21, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
24 49 0.56
25 37 0.42
26 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.26
Consensus pattern (24 bp):
AGCACTATGTGTGCGAGATTACGT
Found at i:90592303 original size:46 final size:46
Alignment explanation
Indices: 90592236--90592329 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
90592226 ACTTGTAGCT
90592236 TCCATATTGGATATCTTGAGGATCTTCTCTCTTAGTGGTAAAACTG
1 TCCATATTGGATATCTTGAGGATCTTCTCTCTTAGTGGTAAAACTG
90592282 TCCATATTGGATATCTTGAGGATCTTCTCTCTTAGTGGTAAAACTG
1 TCCATATTGGATATCTTGAGGATCTTCTCTCTTAGTGGTAAAACTG
90592328 TC
1 TC
90592330 TTTAGAGTTC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.39
Consensus pattern (46 bp):
TCCATATTGGATATCTTGAGGATCTTCTCTCTTAGTGGTAAAACTG
Found at i:90593358 original size:20 final size:20
Alignment explanation
Indices: 90593310--90593388 Score: 81
Period size: 20 Copynumber: 4.0 Consensus size: 20
90593300 GACTTGCTTG
*
90593310 AAAATCATTTTGA-TGTG-TT
1 AAAATCATTTTCACT-TGATT
* *
90593329 AAAATGATTTTAACTTGATT
1 AAAATCATTTTCACTTGATT
* *
90593349 GAAATCATTTTCACTTGGTT
1 AAAATCATTTTCACTTGATT
*
90593369 AAAATCATTTGCACTTGATT
1 AAAATCATTTTCACTTGATT
90593389 CTAAAATTGT
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
19 13 0.27
20 36 0.73
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.44
Consensus pattern (20 bp):
AAAATCATTTTCACTTGATT
Found at i:90593370 original size:40 final size:40
Alignment explanation
Indices: 90593301--90593388 Score: 99
Period size: 40 Copynumber: 2.2 Consensus size: 40
90593291 AGAAATTCTG
* * * *
90593301 ACTTGCTTGAAAATCATTTTGATGTGTTAAAATGATTTTA
1 ACTTGATTGAAAATCATTTTCATGTGTTAAAATCATTTGA
*
90593341 ACTTGATTG-AAATCATTTTCACT-TGGTTAAAATCATTTGC
1 ACTTGATTGAAAATCATTTTCA-TGT-GTTAAAATCATTTGA
90593381 ACTTGATT
1 ACTTGATT
90593389 CTAAAATTGT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
39 12 0.29
40 29 0.71
ACGTcount: A:0.31, C:0.11, G:0.14, T:0.44
Consensus pattern (40 bp):
ACTTGATTGAAAATCATTTTCATGTGTTAAAATCATTTGA
Found at i:90597849 original size:28 final size:28
Alignment explanation
Indices: 90597783--90597910 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
90597773 CATGAGATTG
* * **
90597783 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
90597812 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
90597840 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
90597869 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
90597897 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
90597911 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:90597872 original size:57 final size:57
Alignment explanation
Indices: 90597783--90597910 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
90597773 CATGAGATTG
*
90597783 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
90597840 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
90597897 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
90597911 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:90599559 original size:27 final size:27
Alignment explanation
Indices: 90599529--90599712 Score: 260
Period size: 27 Copynumber: 6.8 Consensus size: 27
90599519 ATTACCAAAG
*
90599529 TACCCTCAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
90599556 TACCCTCGATTTACTAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
90599583 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
90599610 TACCCTCAATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
90599637 TACCCTCGATTTATAAAATTACGGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
90599664 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
90599691 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
90599713 TAAAATACCC
Statistics
Matches: 136, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 136 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:90599630 original size:81 final size:81
Alignment explanation
Indices: 90599510--90599712 Score: 291
Period size: 81 Copynumber: 2.5 Consensus size: 81
90599500 AATGTCATCC
* ***
90599510 ATTTGTAAAATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTACT-AAA
1 ATTTATAAAATTACCATTTTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTA-TAAAA
*
90599574 TTACCGTTTTACCCTCG
65 TTACCGTTTTACCCTCA
* *
90599591 ATTTATAAAATTACCATTTTACCCTCAATTTACAGAATTATCGTTTTACCCTCGATTTATAAAAT
1 ATTTATAAAATTACCATTTTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTATAAAAT
*
90599656 TACGGTTTTACCCTCA
66 TACCGTTTTACCCTCA
* * *
90599672 ATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTAC
1 ATTTATAAAATTACCATTTTACCCTCAATTTACAAAATTAC
90599713 TAAAATACCC
Statistics
Matches: 108, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
80 1 0.01
81 107 0.99
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (81 bp):
ATTTATAAAATTACCATTTTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTATAAAAT
TACCGTTTTACCCTCA
Found at i:90599736 original size:81 final size:79
Alignment explanation
Indices: 90599510--90599740 Score: 264
Period size: 81 Copynumber: 2.8 Consensus size: 79
90599500 AATGTCATCC
* *** *
90599510 ATTTGTAAAATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTACTAAAT
1 ATTTATAAAATTACCATTTTACCCTCAATTTACAAAATTA-C-TTTTACCCTCGATTTACAAAAT
*
90599575 TACCGTTTTACCCTCG
64 TACCGTTTTACCCTCA
* *
90599591 ATTTATAAAATTACCATTTTACCCTCAATTTACAGAATTATCGTTTTACCCTCGATTTATAAAAT
1 ATTTATAAAATTACCATTTTACCCTCAATTTACAAAATTA-C-TTTTACCCTCGATTTACAAAAT
*
90599656 TACGGTTTTACCCTCA
64 TACCGTTTTACCCTCA
* * * ** * *
90599672 ATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAAT
1 ATTTATAAAATTACCATTTTACCCTCAATTTACAAAATTACT--TTTACCCTCGATTTACAAAAT
90599737 TACC
64 TACC
90599741 AAAATACCCC
Statistics
Matches: 128, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 1 0.01
80 1 0.01
81 126 0.98
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (79 bp):
ATTTATAAAATTACCATTTTACCCTCAATTTACAAAATTACTTTTACCCTCGATTTACAAAATTA
CCGTTTTACCCTCA
Found at i:90599880 original size:29 final size:28
Alignment explanation
Indices: 90599835--90599916 Score: 96
Period size: 29 Copynumber: 2.9 Consensus size: 28
90599825 ATACACCTAA
*
90599835 TTTAAAAAATTACAGAAATACCCTTGAC
1 TTTAAAAAATTATAGAAATACCCTTGAC
* *
90599863 TTTCAAAAAATTATAGAAATACCATT-AG
1 TTT-AAAAAATTATAGAAATACCCTTGAC
*
90599891 TTTACAAAATTACT-GAAATACCCTTG
1 TTTAAAAAATTA-TAGAAATACCCTTG
90599917 GTTTGTAGAT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
27 18 0.39
28 8 0.17
29 20 0.43
ACGTcount: A:0.45, C:0.16, G:0.07, T:0.32
Consensus pattern (28 bp):
TTTAAAAAATTATAGAAATACCCTTGAC
Found at i:90599920 original size:27 final size:27
Alignment explanation
Indices: 90599691--90599920 Score: 144
Period size: 27 Copynumber: 8.4 Consensus size: 27
90599681 ATTACCGTTT
* *
90599691 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
*
90599718 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * ** *
90599745 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
*** *
90599772 TACCAC-TGGTTTGTGAAATTACTGAAA
1 TACC-CTTGGTTTACAAAATTACTAAAA
*** ** *
90599799 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
** *
90599826 TACACC-TAATTTAAAAAATTAC-AGAAA
1 TAC-CCTTGGTTTACAAAATTACTA-AAA
* *
90599853 TACCCTTGACTTTCAAAAAATTA-TAGAAA
1 TACCCTTG-GTTT-ACAAAATTACTA-AAA
* * *
90599882 TACCATTAGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
90599909 TACCCTTGGTTT
1 TACCCTTGGTTT
90599921 GTAGATTTAC
Statistics
Matches: 165, Mismatches: 29, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
26 4 0.02
27 131 0.79
28 10 0.06
29 20 0.12
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACTAAAA
Found at i:90600048 original size:26 final size:26
Alignment explanation
Indices: 90599961--90600042 Score: 71
Period size: 26 Copynumber: 3.2 Consensus size: 26
90599951 AAATGACTAA
* *
90599961 AATACCCCT-AATAGGTAAAAAGACCG
1 AATACCCCTGTAT-GGTAAAATGACCG
* * *
90599987 TAA-AGCCCCTGTAGGGTAAAGTGACCT
1 -AATA-CCCCTGTATGGTAAAATGACCG
90600014 AATACCCCTGTATGGTAAAATGA-CG
1 AATACCCCTGTATGGTAAAATGACCG
90600039 AATA
1 AATA
90600043 TGCCCTTATG
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
25 5 0.11
26 20 0.45
27 18 0.41
28 1 0.02
ACGTcount: A:0.39, C:0.21, G:0.20, T:0.21
Consensus pattern (26 bp):
AATACCCCTGTATGGTAAAATGACCG
Found at i:90600398 original size:17 final size:19
Alignment explanation
Indices: 90600357--90600401 Score: 58
Period size: 17 Copynumber: 2.4 Consensus size: 19
90600347 ATGGTAAGTT
90600357 GGGCCTCAATGGGCTATAATC
1 GGGCC-CAATGGGCTAT-ATC
90600378 GGGCCCAATGGGCT-T-TC
1 GGGCCCAATGGGCTATATC
90600395 GGGCCCA
1 GGGCCCA
90600402 TTTGGGTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 9 0.38
19 1 0.04
20 9 0.38
21 5 0.21
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.20
Consensus pattern (19 bp):
GGGCCCAATGGGCTATATC
Found at i:90600885 original size:25 final size:24
Alignment explanation
Indices: 90600847--90600916 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
90600837 AGGAAGTGCT
* *
90600847 AAAAGGGCTATGCCTCAGTTTACCG
1 AAAAGGGCTTTGCC-CAGTTTACCA
*
90600872 AAAAGGGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCC-AGTTTACCA
90600897 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTG-CCCAGTT
90600917 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
24 1 0.03
25 36 0.90
26 3 0.08
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCAGTTTACCA
Found at i:90600929 original size:24 final size:24
Alignment explanation
Indices: 90600872--90600943 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 24
90600862 CAGTTTACCG
*
90600872 AAAAG-GGCTTTGCCCTAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
90600896 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
90600920 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
90600944 ATGATAAAGC
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
24 19 0.47
25 21 0.52
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:90601185 original size:31 final size:31
Alignment explanation
Indices: 90601137--90601217 Score: 130
Period size: 31 Copynumber: 2.7 Consensus size: 31
90601127 GCTTACAGTC
*
90601137 AAGGCTTCAG-CCAGTGATATCATTTATGAA
1 AAGGCTTCGGCCCAGTGATATCATTTATGAA
*
90601167 AAGGCTTCGGCCCAGTGATATGATTTATGAA
1 AAGGCTTCGGCCCAGTGATATCATTTATGAA
90601198 AAGGCTTCGGCCCAGT-ATAT
1 AAGGCTTCGGCCCAGTGATAT
90601218 GTCGAGACTG
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
30 13 0.27
31 35 0.73
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (31 bp):
AAGGCTTCGGCCCAGTGATATCATTTATGAA
Found at i:90604593 original size:15 final size:17
Alignment explanation
Indices: 90604573--90604605 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
90604563 TATCATTATG
90604573 GATTCGTT-CGGC-AAA
1 GATTCGTTACGGCGAAA
90604588 GATTCGTTACGGCGAAA
1 GATTCGTTACGGCGAAA
90604605 G
1 G
90604606 TCCCGGTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 4 0.25
17 4 0.25
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24
Consensus pattern (17 bp):
GATTCGTTACGGCGAAA
Found at i:90608379 original size:47 final size:46
Alignment explanation
Indices: 90608230--90608404 Score: 151
Period size: 47 Copynumber: 3.8 Consensus size: 46
90608220 CATTTGTTTG
* * * *
90608230 TGAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGACA
1 TGAGCCAGTGTAAGACATGTCTAGGACATGCATCGACCTCAAGATA
* * * *
90608276 TAAGTCAGTGTAAGACATGTC-AAGACATGCATC-AGCTACAAGATGA
1 TGAGCCAGTGTAAGACATGTCTAGGACATGCATCGACCT-CAAGAT-A
* * **
90608322 T-AGTCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CTTTAGATA
1 TGAGCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGACCTCAAGATA
*
90608368 TGAGCCAGTGTAAGACCATGTCTAGAACATGGCATCG
1 TGAGCCAGTGTAAGA-CATGTCTAGGACAT-GCATCG
90608405 GCACCTTACC
Statistics
Matches: 107, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
44 3 0.03
45 27 0.25
46 28 0.26
47 41 0.38
48 7 0.07
49 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.23
Consensus pattern (46 bp):
TGAGCCAGTGTAAGACATGTCTAGGACATGCATCGACCTCAAGATA
Found at i:90610122 original size:9 final size:9
Alignment explanation
Indices: 90610095--90610125 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
90610085 AACCCAAACA
90610095 CTCCACCTC
1 CTCCACCTC
*
90610104 ATCCACCTC
1 CTCCACCTC
90610113 CTCCACCTC
1 CTCCACCTC
90610122 CTCC
1 CTCC
90610126 GATTCCTCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.13, C:0.65, G:0.00, T:0.23
Consensus pattern (9 bp):
CTCCACCTC
Found at i:90618705 original size:168 final size:168
Alignment explanation
Indices: 90618427--90618734 Score: 510
Period size: 168 Copynumber: 1.8 Consensus size: 168
90618417 GTATATGTGA
*
90618427 CATCGATATGTGACTCTAATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGGCATCGATAT
1 CATCGATATGTGACTCTAATATATGTGTGCGAGTAAGTCCACATTTAATACGTTGGCATCGATAT
* * * *
90618492 GTGACTCTAATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGGCATCGATATGTGATTCTG
66 GTGACTCTAATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTAATTCCG
*
90618557 GTATATGTGTGTGAGTAAGTCCACGCTACATACGTCGG
131 ATATATGTGTGTGAGTAAGTCCACGCTACATACGTCGG
* *
90618595 CATCGATATGTGACTCTGATATATGTGTGCGAGTAAGTCCACATTTAATATGTTGGCATCGATAT
1 CATCGATATGTGACTCTAATATATGTGTGCGAGTAAGTCCACATTTAATACGTTGGCATCGATAT
* *
90618660 GTGA-TTTCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTAATTCC
66 GTGACTCT-AATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTAATTCC
90618724 GATATATGTGT
130 GATATATGTGT
90618735 ACGAGTGAGA
Statistics
Matches: 129, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
167 2 0.02
168 127 0.98
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (168 bp):
CATCGATATGTGACTCTAATATATGTGTGCGAGTAAGTCCACATTTAATACGTTGGCATCGATAT
GTGACTCTAATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTAATTCCG
ATATATGTGTGTGAGTAAGTCCACGCTACATACGTCGG
Found at i:90618746 original size:56 final size:56
Alignment explanation
Indices: 90618427--90618740 Score: 452
Period size: 56 Copynumber: 5.6 Consensus size: 56
90618417 GTATATGTGA
* *
90618427 CATCGATATGTGACTCTAATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGG
1 CATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGG
* *
90618483 CATCGATATGTGACTCTAATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGG
1 CATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGG
* * * *
90618539 CATCGATATGTGATTCTGGTATATGTGTGTGAGTAAGTCCACG-CTACATACGTCGG
1 CATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCACGTTTA-ATACGTTGG
* * *
90618595 CATCGATATGTGACTCTGATATATGTGTGCGAGTAAGTCCACATTTAATATGTTGG
1 CATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGG
*
90618651 CATCGATATGTGATT-TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGG
1 CATCGATATGTGATTCT-GATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGG
* * * *
90618707 CATCAATATGTAATTCCGATATATGTGTACGAGT
1 CATCGATATGTGATTCTGATATATGTGTGCGAGT
90618741 GAGACCCTGT
Statistics
Matches: 233, Mismatches: 21, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
55 3 0.01
56 228 0.98
57 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.34
Consensus pattern (56 bp):
CATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGG
Found at i:90618764 original size:112 final size:111
Alignment explanation
Indices: 90618427--90618777 Score: 401
Period size: 112 Copynumber: 3.1 Consensus size: 111
90618417 GTATATGTGA
* *
90618427 CATCGATATGTGACTCTAATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGGCATCGATAT
1 CATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGGCATCGATAT
* * *
90618492 GTGACTCTAATATATGTGTGCGAGTAAGTCCAC-GTTTAATACGTTGG
66 GTGACTCTGATATATGTGTGCGAGTAAGTCCACTGTATAGTA-G-TGG
* * * *
90618539 CATCGATATGTGATTCTGGTATATGTGTGTGAGTAAGTCCACG-CTACATACGTCGGCATCGATA
1 CATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCACGTTTA-ATACGTTGGCATCGATA
*
90618603 TGTGACTCTGATATATGTGTGCGAGTAAGTCCACAT-T-TAATATGTTGG
65 TGTGACTCTGATATATGTGTGCGAGTAAGTCCAC-TGTATAGTA-G-TGG
* *
90618651 CATCGATATGTGATT-TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATA
1 CATCGATATGTGATTCT-GATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGGCATCGATA
* * * * * *
90618715 TGTAATTCCGATATATGTGTACGAGTGAGACC-CTGTATGAGGTAGTGG
65 TGTGACTCTGATATATGTGTGCGAGTAAGTCCACTGTAT-A-GTAGTGG
90618763 CATC-ATTATGTGATT
1 CATCGA-TATGTGATT
90618778 ATATGTAAGA
Statistics
Matches: 208, Mismatches: 21, Indels: 20
0.84 0.08 0.08
Matches are distributed among these distances:
110 1 0.00
111 6 0.03
112 194 0.93
113 5 0.02
114 2 0.01
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.34
Consensus pattern (111 bp):
CATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGGCATCGATAT
GTGACTCTGATATATGTGTGCGAGTAAGTCCACTGTATAGTAGTGG
Found at i:90620849 original size:23 final size:22
Alignment explanation
Indices: 90620815--90620857 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
90620805 GCTAATGTCG
90620815 TATATTTGAAATTGTTGATATAT
1 TATATTTGAAATTGTT-ATATAT
*
90620838 TATATTTTAAATTGTTATAT
1 TATATTTGAAATTGTTATAT
90620858 GTGAACGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (22 bp):
TATATTTGAAATTGTTATATAT
Found at i:90625447 original size:56 final size:56
Alignment explanation
Indices: 90625131--90625441 Score: 432
Period size: 56 Copynumber: 5.6 Consensus size: 56
90625121 GTATATGTGA
* * *
90625131 CATCGATATGTGACTCTGATATATGTGTGTGAGTAAGTCCACGTTTAATGCATTGG
1 CATCGATATGTGACTCTGATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGG
* * *
90625187 CATCGATATGT---TCTGGTATATGTGTGTGAGTAAGTCCATG-TTACATACGTTGG
1 CATCGATATGTGACTCTGATATATGTGTGCGAGTAAGTCCACGTTTA-ATACGTTGG
*
90625240 CATCGATATGTGACTCTAATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGG
1 CATCGATATGTGACTCTGATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGG
*
90625296 CATCGATATGTGACTCTAATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGG
1 CATCGATATGTGACTCTGATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGG
** * * * *
90625352 CATCGATATGTGGTTCTGATATATGTGTGCAAGGAAGACCACATTTAATACGTTGG
1 CATCGATATGTGACTCTGATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGG
* * *
90625408 CATCGATATGTAATTCTGATATATGTGTACGAGT
1 CATCGATATGTGACTCTGATATATGTGTGCGAGT
90625442 GAGACCCTGT
Statistics
Matches: 230, Mismatches: 20, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
52 3 0.01
53 45 0.20
56 179 0.78
57 3 0.01
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.35
Consensus pattern (56 bp):
CATCGATATGTGACTCTGATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGG
Found at i:90629972 original size:46 final size:47
Alignment explanation
Indices: 90629823--90630091 Score: 230
Period size: 46 Copynumber: 5.7 Consensus size: 47
90629813 ATTTGTTTGT
* * *
90629823 GAGCTAGTGTAAGA-CATGTCTAGGACATGCATCGGCCAC-ATTATGA
1 GAGCCAGTGTAAGACCATGTCTAGGACATGCATCGGCCTCGA-GATGA
* * * ** *
90629869 GAGCCAGTGTAAGACCATTTCTAGGACATGGCATCAGCATTAAGACGA
1 GAGCCAGTGTAAGACCATGTCTAGGACAT-GCATCGGCCTCGAGATGA
* * *
90629917 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACCATGTCTAGGACATGCATCGGCCTCGAGATG-A
* *
90629964 -AGCCAGTGTAAGA-CATGTTTAGGACATGTATCGG-CTACGAGATGA
1 GAGCCAGTGTAAGACCATGTCTAGGACATGCATCGGCCT-CGAGATGA
* * * * * * *
90630009 TAGTCAATGTAAGACCATGTCTGGGACATGGCAT-TGACTTGAGAT-A
1 GAGCCAGTGTAAGACCATGTCTAGGACAT-GCATCGGCCTCGAGATGA
90630055 TGAGCCAGTGTAAGACCATGTCTAGGACATGCCATCG
1 -GAGCCAGTGTAAGACCATGTCTAGGACATG-CATCG
90630092 ATACCTTACC
Statistics
Matches: 179, Mismatches: 32, Indels: 22
0.77 0.14 0.09
Matches are distributed among these distances:
45 3 0.02
46 75 0.42
47 72 0.40
48 28 0.16
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTAGGACATGCATCGGCCTCGAGATGA
Found at i:90630083 original size:140 final size:141
Alignment explanation
Indices: 90629828--90630091 Score: 331
Period size: 140 Copynumber: 1.9 Consensus size: 141
90629818 TTTGTGAGCT
* * *
90629828 AGTGTAAGACATGTCTAGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATTTCTAG
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCACATGATGAGAGCCAATGTAAGACCATGTCTAG
* *
90629893 GACATGGCATCAGCATTAAGACGAGAGCTAGTGTAAGACATGTCTGGGACATG-CATCGGCCTCG
66 GACATGGCATCAGCATTAAGACGAGAGCCAGTGTAAGACATGTCTAGGACATGCCATCGGCCTCG
90629957 AGACGTAAGCC
131 AGACGTAAGCC
* * * * * *
90629968 AGTGTAAGACATGTTTAGGACATGTATCGGCTACGA-GATGATAGTCAATGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCAC-ATGATGAGAGCCAATGTAAGACCATGTCTA
* * *
90630032 GGACATGGCAT-TG-ACTTGAGA-TATGAGCCAGTGTAAGACCATGTCTAGGACATGCCATCG
65 GGACATGGCATCAGCA-TTAAGACGA-GAGCCAGTGTAAGA-CATGTCTAGGACATGCCATCG
90630092 ATACCTTACC
Statistics
Matches: 105, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
138 2 0.02
139 19 0.18
140 78 0.74
141 6 0.06
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.23
Consensus pattern (141 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCCACATGATGAGAGCCAATGTAAGACCATGTCTAG
GACATGGCATCAGCATTAAGACGAGAGCCAGTGTAAGACATGTCTAGGACATGCCATCGGCCTCG
AGACGTAAGCC
Found at i:90631619 original size:19 final size:19
Alignment explanation
Indices: 90631595--90631632 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
90631585 TGGAAAGAGA
90631595 AAGGAGATAAGGATTTCTT
1 AAGGAGATAAGGATTTCTT
90631614 AAGGAGATAAGGATTTCTT
1 AAGGAGATAAGGATTTCTT
90631633 GAAAAACGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.26, T:0.32
Consensus pattern (19 bp):
AAGGAGATAAGGATTTCTT
Found at i:90635018 original size:40 final size:40
Alignment explanation
Indices: 90634963--90635217 Score: 190
Period size: 40 Copynumber: 6.2 Consensus size: 40
90634953 TATCTCACAT
* * *
90634963 ACTAAGTACCGTACATAGCCGAAGCTATTTCAAGTCGCAC
1 ACTAAGTGCCTTACATAGCCGAAGCTATTTCAAATCGCAC
* * **
90635003 ACTAAGCGCCTTACATAGCC-AATGCTATCTCATTTCTCGCAC
1 ACTAAGTGCCTTACATAGCCGAA-GCTATTTCA--AATCGCAC
* *
90635045 ACTAAGTGCCGTACATAGCCGAAGTTATTTCAAATCGCAC
1 ACTAAGTGCCTTACATAGCCGAAGCTATTTCAAATCGCAC
* * * **
90635085 ACTAAGTGCCTTACGTAGCAGAAGCTATCTCATTTCTCGCAC
1 ACTAAGTGCCTTACATAGCCGAAGCTATTTCA--AATCGCAC
* ** * * *
90635127 ACTAAGTGCCATATGTAGCTGAAGCTATCTC-ATTCCTGCAC
1 ACTAAGTGCCTTACATAGCCGAAGCTATTTCAAAT-C-GCAC
* * * * * * *
90635168 ATTAAGTGTCATATATAGCAGAAGCTATCTCAAATTGCAC
1 ACTAAGTGCCTTACATAGCCGAAGCTATTTCAAATCGCAC
90635208 ACTAAGTGCC
1 ACTAAGTGCC
90635218 ACAAGTAGCC
Statistics
Matches: 174, Mismatches: 32, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
39 3 0.02
40 71 0.41
41 31 0.18
42 67 0.39
43 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (40 bp):
ACTAAGTGCCTTACATAGCCGAAGCTATTTCAAATCGCAC
Found at i:90635112 original size:82 final size:82
Alignment explanation
Indices: 90634963--90635154 Score: 278
Period size: 82 Copynumber: 2.3 Consensus size: 82
90634953 TATCTCACAT
* * *
90634963 ACTAAGTACCGTACATAGCCGAAGCTATTTCAAGTCGCACACTAAGCGCCTTACATAGCCAATGC
1 ACTAAGTGCCGTACATAGCCGAAGCTATTTCAAATCGCACACTAAGCGCCTTACATAGCCAAAGC
90635028 TATCTCATTTCTCGCAC
66 TATCTCATTTCTCGCAC
* * *
90635045 ACTAAGTGCCGTACATAGCCGAAGTTATTTCAAATCGCACACTAAGTGCCTTACGTAG-CAGAAG
1 ACTAAGTGCCGTACATAGCCGAAGCTATTTCAAATCGCACACTAAGCGCCTTACATAGCCA-AAG
90635109 CTATCTCATTTCTCGCAC
65 CTATCTCATTTCTCGCAC
* ** *
90635127 ACTAAGTGCCATATGTAGCTGAAGCTAT
1 ACTAAGTGCCGTACATAGCCGAAGCTAT
90635155 CTCATTCCTG
Statistics
Matches: 98, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 2 0.02
82 96 0.98
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (82 bp):
ACTAAGTGCCGTACATAGCCGAAGCTATTTCAAATCGCACACTAAGCGCCTTACATAGCCAAAGC
TATCTCATTTCTCGCAC
Found at i:90635181 original size:41 final size:42
Alignment explanation
Indices: 90635026--90635199 Score: 183
Period size: 42 Copynumber: 4.2 Consensus size: 42
90635016 CATAGCCAAT
* * ** *
90635026 GCTATCTCATTTCTCGCACACTAAGTGCCGTACATAGCCGAA
1 GCTATCTCATTCCTCGCACACTAAGTGCCATATGTAGCAGAA
* * ** * *
90635068 GTTATTTCA--AATCGCACACTAAGTGCCTTACGTAGCAGAA
1 GCTATCTCATTCCTCGCACACTAAGTGCCATATGTAGCAGAA
* *
90635108 GCTATCTCATTTCTCGCACACTAAGTGCCATATGTAGCTGAA
1 GCTATCTCATTCCTCGCACACTAAGTGCCATATGTAGCAGAA
* * *
90635150 GCTATCTCATTCCT-GCACATTAAGTGTCATATATAGCAGAA
1 GCTATCTCATTCCTCGCACACTAAGTGCCATATGTAGCAGAA
90635191 GCTATCTCA
1 GCTATCTCA
90635200 AATTGCACAC
Statistics
Matches: 111, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
40 33 0.30
41 32 0.29
42 46 0.41
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (42 bp):
GCTATCTCATTCCTCGCACACTAAGTGCCATATGTAGCAGAA
Found at i:90636545 original size:39 final size:39
Alignment explanation
Indices: 90636486--90636677 Score: 339
Period size: 39 Copynumber: 4.9 Consensus size: 39
90636476 ATTTGATGTG
*
90636486 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAGTTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
90636525 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
90636564 TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
90636603 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* *
90636642 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAA
90636678 ATATGGCCGG
Statistics
Matches: 146, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 146 1.00
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:90636701 original size:39 final size:39
Alignment explanation
Indices: 90636489--90636714 Score: 184
Period size: 39 Copynumber: 5.8 Consensus size: 39
90636479 TGATGTGTAT
** * ** *
90636489 CCGGACTTAGGGTCCGCAGGCTATGTGCTGGAGTTATAT
1 CCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAATATAG
* ** * * *
90636528 CTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATAT
1 CCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAATATAG
* ** * * *
90636567 CCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATAT
1 CCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAATATAG
** * * *
90636606 CCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATAT
1 CCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAATATAG
* *
90636645 CCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATGG
1 CCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAATATAG
* * *
90636684 CCGGGC-TAAAGTCCCGCAGGCTTCGAGCTGG
1 CCGGACTTAAAGT-CCGCAGGCTACGTGCTGG
90636715 TATTATACTG
Statistics
Matches: 172, Mismatches: 14, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
38 5 0.03
39 167 0.97
ACGTcount: A:0.20, C:0.22, G:0.32, T:0.26
Consensus pattern (39 bp):
CCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAATATAG
Found at i:90636701 original size:117 final size:117
Alignment explanation
Indices: 90636486--90636705 Score: 325
Period size: 117 Copynumber: 1.9 Consensus size: 117
90636476 ATTTGATGTG
* * *
90636486 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAGTTATATCTGGACTTAGGGTCCGCAGGCTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTA
* * * **
90636551 TGTGCTGGAATTATATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
66 CGTGCTGGAAATATAGCCAGACTTAAAGTCCGCAGGCTATGTGCTGGAATTA
90636603 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTA
* * *
90636668 CGTGCTGGAAATATGGCCGGGC-TAAAGTCCCGCAGGCT
66 CGTGCTGGAAATATAGCCAGACTTAAAGT-CCGCAGGCT
90636706 TCGAGCTGGT
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
116 4 0.04
117 87 0.96
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.26
Consensus pattern (117 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTA
CGTGCTGGAAATATAGCCAGACTTAAAGTCCGCAGGCTATGTGCTGGAATTA
Found at i:90636741 original size:117 final size:117
Alignment explanation
Indices: 90636486--90636757 Score: 291
Period size: 117 Copynumber: 2.3 Consensus size: 117
90636476 ATTTGATGTG
** * * *
90636486 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAGTTATATCTGGACTTAGGGTCCGCAGGCTA
1 TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTA
* * * ** *
90636551 TGTGCTGGAATTATATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
66 CGTGCTGGAAATATAGCCAGACTTAAAGTCCGCAGGCTATGAGCTGGAATTA
**
90636603 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTA
1 TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTA
* * * *
90636668 CGTGCTGGAAATATGGCCGGGC-TAAAGTCCCGCAGGCT-TCGAGCTGGTATTA
66 CGTGCTGGAAATATAGCCAGACTTAAAGT-CCGCAGGCTAT-GAGCTGGAATTA
* ** *
90636720 TA-CTGGGTTTAAATTCTCGCAGGCT-TGTGCTGGTAATT
1 TATCCGGACTTAAAGTC-CGCAGGCTATGTGCTGG-AATT
90636758 GGTTTCAAGT
Statistics
Matches: 132, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
116 21 0.16
117 111 0.84
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (117 bp):
TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTA
CGTGCTGGAAATATAGCCAGACTTAAAGTCCGCAGGCTATGAGCTGGAATTA
Found at i:90657599 original size:15 final size:13
Alignment explanation
Indices: 90657570--90657596 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
90657560 GCTCGGTAGG
90657570 GACACGCCCGTGT
1 GACACGCCCGTGT
90657583 GACACGCCCGTGT
1 GACACGCCCGTGT
90657596 G
1 G
90657597 TGATTACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:90658464 original size:17 final size:18
Alignment explanation
Indices: 90658435--90658470 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
90658425 AAATATGCAT
90658435 ACATAGTTTTTTTTTAAG
1 ACATAGTTTTTTTTTAAG
90658453 ACATAG-TTTTTTTTAAG
1 ACATAGTTTTTTTTTAAG
90658470 A
1 A
90658471 ACAAGTCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.31, C:0.06, G:0.11, T:0.53
Consensus pattern (18 bp):
ACATAGTTTTTTTTTAAG
Found at i:90665714 original size:28 final size:28
Alignment explanation
Indices: 90665670--90665727 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
90665660 TGACATAATT
* *
90665670 AGTTAGAGAAATTATAATTTAGTAGTAA
1 AGTTAGAGAAATGATAATTGAGTAGTAA
90665698 AGTTAGAGAAATGATAATTGAGTAGTAA
1 AGTTAGAGAAATGATAATTGAGTAGTAA
90665726 AG
1 AG
90665728 ATGTCTGTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.22, T:0.31
Consensus pattern (28 bp):
AGTTAGAGAAATGATAATTGAGTAGTAA
Found at i:90665921 original size:40 final size:40
Alignment explanation
Indices: 90665876--90665952 Score: 136
Period size: 40 Copynumber: 1.9 Consensus size: 40
90665866 ACTGTAATGT
90665876 TAGACGAAAGTTATGTTGGTCTAGTTGGTTCATGATCGGC
1 TAGACGAAAGTTATGTTGGTCTAGTTGGTTCATGATCGGC
* *
90665916 TAGACGAAAGTTCTGTTGGTCTGGTTGGTTCATGATC
1 TAGACGAAAGTTATGTTGGTCTAGTTGGTTCATGATC
90665953 AACATTTCTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.21, C:0.13, G:0.30, T:0.36
Consensus pattern (40 bp):
TAGACGAAAGTTATGTTGGTCTAGTTGGTTCATGATCGGC
Found at i:90675049 original size:20 final size:20
Alignment explanation
Indices: 90675026--90675065 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
90675016 ACACCCATGG
90675026 GGCTCGGGACACGCCCGTGT
1 GGCTCGGGACACGCCCGTGT
90675046 GGCTCGGGACACGCCCGTGT
1 GGCTCGGGACACGCCCGTGT
90675066 CCTTAGCCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.10, C:0.35, G:0.40, T:0.15
Consensus pattern (20 bp):
GGCTCGGGACACGCCCGTGT
Found at i:90676496 original size:27 final size:27
Alignment explanation
Indices: 90676458--90676512 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
90676448 GTAACTTAGG
*
90676458 TAGCAATAATGCATTGCTAGATGCCAC
1 TAGCAATAATGCATTACTAGATGCCAC
* *
90676485 TAGCAATGATGCATTACTAGATGTCAC
1 TAGCAATAATGCATTACTAGATGCCAC
90676512 T
1 T
90676513 CATTATTTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (27 bp):
TAGCAATAATGCATTACTAGATGCCAC
Found at i:90685598 original size:40 final size:39
Alignment explanation
Indices: 90685534--90685617 Score: 105
Period size: 40 Copynumber: 2.1 Consensus size: 39
90685524 TTTATATATA
*
90685534 TAGCCGAAGCTATCTCAAATTGCACACCAAGTGCCACTTT
1 TAGCCGAAGCTATCTCAAACTGCACACCAAGTGCCA-TTT
* * * **
90685574 TAGCCGAAGTTATTTCGAACTGCACAGTAAGTGCCATTT
1 TAGCCGAAGCTATCTCAAACTGCACACCAAGTGCCATTT
90685613 TAGCC
1 TAGCC
90685618 AATAAGTCGT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
39 8 0.21
40 30 0.79
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (39 bp):
TAGCCGAAGCTATCTCAAACTGCACACCAAGTGCCATTT
Found at i:90689216 original size:19 final size:20
Alignment explanation
Indices: 90689192--90689229 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
90689182 GGTACCACCA
90689192 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
90689211 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
90689230 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:90690927 original size:39 final size:40
Alignment explanation
Indices: 90690819--90691003 Score: 184
Period size: 40 Copynumber: 4.7 Consensus size: 40
90690809 TCGAATGATG
* * *
90690819 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
90690858 ATCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
90690899 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTAATAAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
*
90690939 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
90690977 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
90691004 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 17, Indels: 16
0.78 0.11 0.10
Matches are distributed among these distances:
38 2 0.02
39 28 0.23
40 80 0.67
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:90691025 original size:79 final size:79
Alignment explanation
Indices: 90690874--90691036 Score: 179
Period size: 79 Copynumber: 2.1 Consensus size: 79
90690864 ACTAAGATCT
* **
90690874 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTAATAAAT
1 GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTAATAAAT
* *
90690939 TCGGGTTAAGTCCC
66 TCCGGTTAAATCCC
* * * *
90690953 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTA
1 GAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-ATA
* *
90691016 TA-TCCGGTTAAATTCC
63 AATTCCGGTTAAATCCC
90691032 GAAGG
1 GAAGG
90691037 TACGTGATTC
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.69
80 20 0.29
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTAATAAAT
TCCGGTTAAATCCC
Found at i:90695827 original size:28 final size:28
Alignment explanation
Indices: 90695770--90695977 Score: 332
Period size: 28 Copynumber: 7.5 Consensus size: 28
90695760 TAAATTGTGC
* *
90695770 AGCACTAAGTGTGCGA-ATTGAATATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
90695797 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
90695825 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
90695853 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
90695881 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
90695908 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
90695936 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
90695963 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
90695978 GACTTAATAT
Statistics
Matches: 172, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
27 65 0.38
28 107 0.62
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:90695835 original size:55 final size:55
Alignment explanation
Indices: 90695770--90695977 Score: 344
Period size: 55 Copynumber: 3.8 Consensus size: 55
90695760 TAAATTGTGC
* *
90695770 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
90695825 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* *
90695881 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
90695936 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
90695978 GACTTAATAT
Statistics
Matches: 145, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
55 91 0.63
56 54 0.37
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:90695911 original size:83 final size:83
Alignment explanation
Indices: 90695770--90695977 Score: 337
Period size: 83 Copynumber: 2.5 Consensus size: 83
90695760 TAAATTGTGC
*
90695770 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
90695835 GTGCGAGTTTGACTATGT
66 GTGCGAGTATGACTATGT
*
90695853 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAG
1 AGCACTAAGTGTGCGAG-TTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAG
*
90695917 TGTGCGAGTATGATTATGT
65 TGTGCGAGTATGACTATGT
* * *
90695936 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
90695978 GACTTAATAT
Statistics
Matches: 117, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
82 22 0.19
83 69 0.59
84 26 0.22
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (83 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
GTGCGAGTATGACTATGT
Found at i:90702361 original size:79 final size:81
Alignment explanation
Indices: 90702225--90702409 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
90702215 TTGAATGATG
*
90702225 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
90702289 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
90702304 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
90702366 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
90702384 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
90702410 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:90702423 original size:40 final size:40
Alignment explanation
Indices: 90702226--90702409 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
90702216 TGAATGATGT
* * * *
90702226 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
90702266 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
90702306 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
90702344 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
90702385 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
90702410 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Done.