Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56482370
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1659275 characters in sequence are not A, C, G, or T
File 1 of 172
Found at i:408 original size:148 final size:148
Alignment explanation
Indices: 140--433 Score: 561
Period size: 148 Copynumber: 2.0 Consensus size: 148
130 CTACACGTGA
*
140 TGTAACTAATTAGTTATTTTTATTTTACGAAATAAATAATTTAAAACGTTATTTGGCCGAATTTG
1 TGTAACTAATTAGTTATTTTCATTTTACGAAATAAATAATTTAAAACGTTATTTGGCCGAATTTG
205 CGCGAGAGTAGCTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATTGGTGACCTCTTGGGAAGTCC
66 CGCGAGAGTAGCTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATTGGTGACCTCTTGGGAAGTCC
270 TCGTGTTGCACCCCTCGG
131 TCGTGTTGCACCCCTCGG
* *
288 TGTAACTAATTAGTTATTTTCATTTTCCGAAATACATAATTTAAAACGTTATTTGGCCGAATTTG
1 TGTAACTAATTAGTTATTTTCATTTTACGAAATAAATAATTTAAAACGTTATTTGGCCGAATTTG
353 CGCGAGAGTAGCTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATTGGTGACCTCTTGGGAAGTCC
66 CGCGAGAGTAGCTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATTGGTGACCTCTTGGGAAGTCC
418 TCGTGTTGCACCCCTC
131 TCGTGTTGCACCCCTC
434 CCATTTGACT
Statistics
Matches: 143, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
148 143 1.00
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.33
Consensus pattern (148 bp):
TGTAACTAATTAGTTATTTTCATTTTACGAAATAAATAATTTAAAACGTTATTTGGCCGAATTTG
CGCGAGAGTAGCTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATTGGTGACCTCTTGGGAAGTCC
TCGTGTTGCACCCCTCGG
Found at i:1995 original size:303 final size:303
Alignment explanation
Indices: 1447--3204 Score: 2242
Period size: 303 Copynumber: 5.8 Consensus size: 303
1437 CGTTTTGAGT
* *
1447 TATTTGGTCGAATTTGCATTCAAATTCGAGGCACAAGTGCTATAAGGGGCAGCCTTTATATAAAT
1 TATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAAT
* *
1512 AGATTGCGTAAGAGTTGACGGGTGCGATCATAACAGCACTAAAT-CATCGGATCCCATCAGAACT
66 AGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACT-AATGCATCGGATCCCATCAGAACT
* * * * * * *
1576 CCGTAGTTAAGTGTACTTAGGCGAGAGTAGTACTAGGTTGGGTGACATCCTGGGAAGCCCTCGTG
130 CCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTG
* * ** * *
1641 TTGCACCCCT-CCTTTTTATTTCGTATAAAGTTTTTTTTTAGTTGTATTTTCTACACGCGGTGTA
195 TTGCACCCCTCCCATTTTATTTCATATAAAG-TTTTTTTTAGTTACATTTTCTCCACGTGGTGTA
* * *
1705 AATAATTAGTTATTTGCGCTTTGCGAAATAAATAATTTGACAC-A
259 ACTAATTAGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGA
* * * * * *
1749 TTATTTGATCGAGTCTGCATTAAAATTCGAGGCGCAAGTGCAATAAGGGGCAGCGTTTATATAAA
1 -TATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAA
* * *
1814 TAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCAACGGATGCCATCAGAACC
65 TAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCATCGGATCCCATCAGAACT
* ** * * *
1879 CCGCAGTTAAGCGTGCTTGGGCGAGACTAGTACTAAAATGGCTGACCTCCTAGGAAGTCCTTGTG
130 CCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTG
* * * * * * *
1944 TTGCACCCCTCCCGTTCTATTT-AGTATAAAGTTTTTTTTAGTTTCATTTTCTACATGCGGTTTA
195 TTGCACCCCTCCCATTTTATTTCA-TATAAAGTTTTTTTTAGTTACATTTTCTCCACGTGGTGTA
* * * * *
2008 AATAATTAGTTATTTGCGCTTTACGAAATAAATAATTCGAAACGT
259 ACTAATTAGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGA
* * *
2053 TATTTGGCCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATATAT
1 TATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAAT
* * * * *
2118 AGATTGCGCAAGATTTGACGGGTGCAATCATACCAGCACTAATGCACCGGATCCTATCAAAACTC
66 AGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCATCGGATCCCATCAGAACTC
* * * * ** * *
2183 CGTAATTCAGCGTGCTTAGGCTTGAGTACTACTAGGATGGGTGATCTCCTGGGAAGTCCTCGTGT
131 CGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGT
*
2248 TGCACCCCTCCCATTTTATTTCATATAATA-TTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAA
196 TGCACCCCTCCCATTTTATTTCATATAA-AGTTTTTTTTAGTTACATTTTCTCCACGTGGTGTAA
* * *
2312 CTAATTCGTTAGTTGCGTTTTGCGAAATACATAATTTGAAACGA
260 CTAATTAGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGA
* * * *
2356 TATTTGGTCGAATTTGCATTCAAATTCGAGGAGGAAGTGCAATAAGGGGCAGCCTTTATATGAAT
1 TATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAAT
* * *
2421 AGATTTCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCAGATCCCATCAGAACTC
66 AGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCATCGGATCCCATCAGAACTC
* * * * *
2486 CACCGTGAAGCGTGCTTGGGCGAGAGTAGTACTAAGATGGGTGACCTCCTGGGATGTCCTCG-GA
131 CGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTG-
2550 TTGCACCCCTCCCATTTTATTTCATAT-AA-TATTTTTTTAGTTACATTTTCTCCACGTGGTGTA
195 TTGCACCCCTCCCATTTTATTTCATATAAAGT-TTTTTTTAGTTACATTTTCTCCACGTGGTGTA
* * ** *
2613 ACTCATTCA-TTTTTTGCGTTTTGAAAAATAAATAATTTCAAACGA
259 ACTAATT-AGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGA
* * *
2658 TATTTGGTCGAATTTGCTTTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAACCTTTATATGAAT
1 TATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAAT
* *
2723 AGATTGCGCAAGAGTTGACGGGTGCGATCCA-ACCAGCACTAATGGATCCGATCCCATCAGAAC-
66 AGATTGCGCAAGAGTTGACGGGTGCGAT-CATACCAGCACTAATGCATCGGATCCCATCAGAACT
** * * *
2786 CTTCAGTTAAGCCTGCTTGGGCGAAAGTAGTTCTAGGATGGGTGACCTCCTGGGAAGTCCTCGTG
130 CCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTG
* * * *
2851 TTGCACCCATCCCATTTTATTTCATATAATGTTTGTTTTAGTTGCATTTTCTCCACGTGGTGTAA
195 TTGCACCCCTCCCATTTTATTTCATATAAAGTTTTTTTTAGTTACATTTTCTCCACGTGGTGTAA
* * * * * *
2916 CTCATTCGTTATTTGAGTTTTACGAAATAAAAAAATTGAAACGA
260 CTAATTAGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGA
* * * * *
2960 TACTTGGTCGAATTTGCATTCAAATTCGAGGCGCAACTGCGATAAAGGGCAGTCTTTATATGAAT
1 TATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAAT
* * * * * *
3025 AAATTGCGCAATAGTTGACGGGTGTGATCATACCAGCATTAAGGCATCCGATCCCATCAGAACTC
66 AGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCATCGGATCCCATCAGAACTC
* * * * *
3090 CGCAGTTAAGCGTTCTTGGGCCAGAGTAGTACTTGGATGGGTGACCTCTTGGGATGTCCTCGTGT
131 CGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGT
* * * *
3155 TCCACCCATCCCATTTTATTTCATATGAAGTTTTTTTAAGTTACATTTTC
196 TGCACCCCTCCCATTTTATTTCATATAAAGTTTTTTTTAGTTACATTTTC
3205 GTTATTTGCG
Statistics
Matches: 1264, Mismatches: 175, Indels: 32
0.86 0.12 0.02
Matches are distributed among these distances:
301 84 0.07
302 368 0.29
303 794 0.63
304 18 0.01
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (303 bp):
TATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAAT
AGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCATCGGATCCCATCAGAACTC
CGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGT
TGCACCCCTCCCATTTTATTTCATATAAAGTTTTTTTTAGTTACATTTTCTCCACGTGGTGTAAC
TAATTAGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGA
Found at i:3925 original size:223 final size:223
Alignment explanation
Indices: 3537--3983 Score: 732
Period size: 223 Copynumber: 2.0 Consensus size: 223
3527 TATAATGTTT
*
3537 GTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTACGTTTTACGAAATAAAAAA
1 GTTTTAGTTACATTTTCTCCACGTGGTGTAACTCATTCGTTATTTACGTTTTACGAAATAAAAAA
* * *
3602 ATTGAATTGATACTTGGTAGAATTTGCATTCAAACTCGAGGGGCAAGTGCGATAAGGGGCAACCT
66 ATTCAAATGATACTTGGTAGAATTTGCATTCAAACTCGAGGCGCAAGTGCGATAAGGGGCAACCT
*
3667 TTATATGAATAGACTGCGCAAGAATTGACGGGTGCGATCCTACCAGCACTAATGCATCTGATCCC
131 TTATATGAATAGACTGCGCAAGAATTGACGGGTGCGATCCTACCAGCACTAATGCATCCGATCCC
3732 ATCAGAACCCCGCAGTTAAGCGTGCTTG
196 ATCAGAACCCCGCAGTTAAGCGTGCTTG
* * * * *
3760 GTTTTAGTTATATTTTCTCCACGTGGTGTAACTCATTCGTTTTTTGCGTTTTGCGAAATAAATAA
1 GTTTTAGTTACATTTTCTCCACGTGGTGTAACTCATTCGTTATTTACGTTTTACGAAATAAAAAA
* * * * *
3825 TTTCAAATGATATTTGGTCGAATTTGCATTCACATTCGAGGCGCAAGTGCGATAAGGGGCAACCT
66 ATTCAAATGATACTTGGTAGAATTTGCATTCAAACTCGAGGCGCAAGTGCGATAAGGGGCAACCT
* *
3890 TTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCCTACCAGCACTAATGCATCCGATCCC
131 TTATATGAATAGACTGCGCAAGAATTGACGGGTGCGATCCTACCAGCACTAATGCATCCGATCCC
*
3955 ATCAGAACCCCGCAGTTGAGCGTGCTTG
196 ATCAGAACCCCGCAGTTAAGCGTGCTTG
3983 G
1 G
3984 GCGAGAGTAG
Statistics
Matches: 206, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
223 206 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (223 bp):
GTTTTAGTTACATTTTCTCCACGTGGTGTAACTCATTCGTTATTTACGTTTTACGAAATAAAAAA
ATTCAAATGATACTTGGTAGAATTTGCATTCAAACTCGAGGCGCAAGTGCGATAAGGGGCAACCT
TTATATGAATAGACTGCGCAAGAATTGACGGGTGCGATCCTACCAGCACTAATGCATCCGATCCC
ATCAGAACCCCGCAGTTAAGCGTGCTTG
Found at i:4307 original size:296 final size:300
Alignment explanation
Indices: 3760--4920 Score: 1026
Period size: 296 Copynumber: 3.7 Consensus size: 300
3750 AGCGTGCTTG
* * * *
3760 GTTTTAGTTATATTTTCTCCACGTGGTGTAACTCATTCGTTTTTTGCGTTTTGCGAAATAAATAA
1 GTTTTAGTTACATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTACGAAATAAAAAA
* ** *
3825 TTTCAAATGATATTTGGTCGAATTTGCATTCACATTCGAGGCGCAAGTGCGATAAGGGGCAACCT
66 TTTGAAATGATA--T-CACGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAACCT
3890 TTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCCTACCAGCACTAATGCATCCGATCCC
128 TTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCCTACCAGCACTAATGCATCCGATCCC
*
3955 ATCAGAACCCCGCAGTTGAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCT-GGAT
193 ATCAGAACTCCGCAGTTGAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGA-
*
4019 AGTCCTCATATTGCACCCATCCCATTTTATTTCATATAATGTTT
257 AGTCCTCGTATTGCACCCATCCCATTTTATTTCATATAATGTTT
* *
4063 GTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCATTATTTGCGTTTTACGAAATAAAAAA
1 GTTTTAGTTACATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTACGAAATAAAAAA
* * * *
4128 TTTGAAA-CA-A-CAC-TATTTGCATTCAAACTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTA
66 TTTGAAATGATATCACGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAACCTTTA
* * * * * *
4189 TATGTAA-AAATTGCACAAGAGTTGACGGGTGTGATCATATCAGCACTAAGGCATCCGATCCCAT
131 TATG-AATAGATTGCGCAAGAGTTGACGGGTGCGATCCTACCAGCACTAATGCATCCGATCCCAT
* * * * * * * *
4253 CAGAACTACGCAATTAAGCGCGCTTGGGCAAGAGTTGTACTAGGATGAGTGACCTCTTGGGAAGT
195 CAGAACTCCGCAGTTGAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGT
* * **
4318 CCTCGTGTTCCACCCATCCCATTTTATTTCATATAAAATTT
260 CCTCGTATTGCACCCATCCCATTTTATTTCATATAATGTTT
* * * * * * *
4359 TTTTTAGTTACATTTTCGT-TATTTGCGTGGGATGGGTGACCTCCTGGGAAGTCCTCCATGGTGC
1 GTTTTAGTTACATTTTC-TCCA----CGT-GG-T--GT-AACT-C-----ATTCGT-TAT-TTGC
* * ** ****** ** ** * * *
4423 AACTCATT-CGTTATTTGCGTTTTGCAAA--ATA--AATAATTTG-AAACGATATT-TAGTCG-A
48 --GT-TTTACGAAATAAAAAATTTG-AAATGATATCACGAATTTGCATTC-AAATTCGAGGCGCA
* *
4480 ATTTGC-ATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAACCTTTATATTAATAGATTGCGCA
108 A-GTGCGA-T--AA---G-GG-GC----------------AACCTTTATATGAATAGATTGCGCA
*
4544 AGAGTTGACGGGTGCGATCTTACCAGCACTAATGCATCCGATCCCATCAGAA-TCCCGCAGTTGA
148 AGAGTTGACGGGTGCGATCCTACCAGCACTAATGCATCCGATCCCATCAGAACT-CCGCAGTTGA
*
4608 GCATGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTATTGCACCCAT
212 GCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTATTGCACCCAT
4673 CCCATTTTATTTCATATAATGTTT
277 CCCATTTTATTTCATATAATGTTT
*
4697 GTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTACGAAATAAAAAA
1 GTTTTAGTTACATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTACGAAATAAAAAA
* ** * *
4762 ATTGAAATGATACTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCAATAAGAGGCAACCT
66 TTTGAAATGATA--T-CACGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAACCT
* * *
4827 TTATATGAATAGAGTACGCAAGAGTTGACGGGTGTGATCCTACCAGCACTAATGCATCCGATCCC
128 TTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCCTACCAGCACTAATGCATCCGATCCC
*
4892 ATCAGAAC-CCTGCAGTTAAGCGTGCTTGG
193 ATCAGAACTCC-GCAGTTGAGCGTGCTTGG
4921 TTTTAGTTAT
Statistics
Matches: 671, Mismatches: 118, Indels: 138
0.72 0.13 0.15
Matches are distributed among these distances:
296 203 0.30
297 7 0.01
300 3 0.00
301 3 0.00
302 4 0.01
303 153 0.23
304 2 0.00
305 3 0.00
306 1 0.00
311 4 0.01
312 2 0.00
313 3 0.00
314 3 0.00
315 21 0.03
316 14 0.02
317 2 0.00
318 5 0.01
319 10 0.01
320 5 0.01
321 6 0.01
322 4 0.01
323 4 0.01
324 2 0.00
325 10 0.01
326 10 0.01
327 3 0.00
328 1 0.00
329 3 0.00
330 2 0.00
332 1 0.00
333 2 0.00
334 3 0.00
337 4 0.01
338 168 0.25
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (300 bp):
GTTTTAGTTACATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTACGAAATAAAAAA
TTTGAAATGATATCACGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAACCTTTA
TATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCCTACCAGCACTAATGCATCCGATCCCATC
AGAACTCCGCAGTTGAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTC
CTCGTATTGCACCCATCCCATTTTATTTCATATAATGTTT
Found at i:4704 original size:338 final size:331
Alignment explanation
Indices: 4086--4713 Score: 891
Period size: 338 Copynumber: 1.9 Consensus size: 331
4076 TTTCTCCACG
* * *
4086 TGGTGTAACTCATTCATTATTTGCGTTTTACGAAATAAAAAATTTGAAACAACACTATTTGCATT
1 TGGTGCAACTCATTCATTATTTGCGTTTTACAAAATAAAAAATTTGAAACAACACAATTTGCATT
*
4151 CAAACTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGTAAAAATTGCACAAGAGTTGACG
66 CAAACTCGAGGCGCAAGTGCGATAAGGGGCAACCTTTATATGTAAAAATTGCACAAGAGTTGACG
* * *
4216 GGTGTGATCATATCAGCACTAAGGCATCCGATCCCATCAGAACTACGCAATTAAGCGCGCTTGGG
131 GGTGCGATCATACCAGCACTAAGGCATCCGATCCCATCAGAACTACGCAATTAAGCACGCTTGGG
* * *
4281 CAAGAGTTGTACTAGGATGAGTGACCTCTTGGGAAGTCCTCGTGTTCCACCCATCCCATTTTATT
196 CAAGAGTAGTACTAGGATGAGTGACCTCCTGGGAAGTCCTCGTATTCCACCCATCCCATTTTATT
*
4346 TCATATAAAATTTTTTTTAGTTACATTTTCGTTATTTGCGTGGGATGGGTGACCTCCTGGGAAGT
261 TCATATAAAATTTGTTTTAGTTACATTTTCGTTATTTGCGTGGGATGGGTGACCTCCTGGGAAGT
4411 CCTCCA
326 CCTCCA
* * * *
4417 TGGTGCAACTCATTCGTTATTTGCGTTTTGCAAAATAAATAATTTGAAACGATATTTAGTCGAAT
1 TGGTGCAACTCATTCATTATTTGCGTTTTACAAAATAAAAAATTTGAAAC-A-A--CA--C-AAT
* * *
4482 TTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAACCTTTATAT-TAATAGATTGCGCAAG
59 TTGCATTCAAACTCGAGGCGCAAGTGCGATAAGGGGCAACCTTTATATGTAA-AAATTGCACAAG
* * * * *
4546 AGTTGACGGGTGCGATCTTACCAGCACTAATGCATCCGATCCCATCAGAA-TCCCGCAGTTGAGC
123 AGTTGACGGGTGCGATCATACCAGCACTAAGGCATCCGATCCCATCAGAACT-ACGCAATTAAGC
* * * *
4610 ATGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTATTGCACCCATCC
187 ACGCTTGGGCAAGAGTAGTACTAGGATGAGTGACCTCCTGGGAAGTCCTCGTATTCCACCCATCC
** *
4675 CATTTTATTTCATATAATGTTTGTTTTAGTTGCATTTTC
252 CATTTTATTTCATATAAAATTTGTTTTAGTTACATTTTC
4714 TCCACGTGGT
Statistics
Matches: 258, Mismatches: 30, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
331 45 0.17
332 1 0.00
333 1 0.00
335 1 0.00
337 5 0.02
338 205 0.79
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (331 bp):
TGGTGCAACTCATTCATTATTTGCGTTTTACAAAATAAAAAATTTGAAACAACACAATTTGCATT
CAAACTCGAGGCGCAAGTGCGATAAGGGGCAACCTTTATATGTAAAAATTGCACAAGAGTTGACG
GGTGCGATCATACCAGCACTAAGGCATCCGATCCCATCAGAACTACGCAATTAAGCACGCTTGGG
CAAGAGTAGTACTAGGATGAGTGACCTCCTGGGAAGTCCTCGTATTCCACCCATCCCATTTTATT
TCATATAAAATTTGTTTTAGTTACATTTTCGTTATTTGCGTGGGATGGGTGACCTCCTGGGAAGT
CCTCCA
Found at i:5096 original size:223 final size:223
Alignment explanation
Indices: 4697--5143 Score: 673
Period size: 223 Copynumber: 2.0 Consensus size: 223
4687 TATAATGTTT
* * * *
4697 GTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTACGAAATAAAAAA
1 GTTTTAGTTACATTTTCTCCACGCGGCGTAACTCATTCGTTATTTACGTTTTACGAAATAAAAAA
4762 ATTGAAATGATACTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCAATAAGAGGCAACCT
66 ATTGAAATGATACTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCAATAAGAGGCAACCT
* * *
4827 TTATATGAATAGAGTACGCAAGAGTTGACGGGTGTGATCCTACCAGCACTAATGCATCCGATCCC
131 TTATATGAATAGACTACGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCATCCGATCCC
* *
4892 ATCAGAAC-CCTGCAGTTAAGCGTGCTTG
196 ATCAAAACTCC-GCAGGTAAGCGTGCTTG
* *
4920 GTTTTAGTTATATTTTCTCCACGCGGCGTAACTCATTCGTTATTTACGTTTT-CTGAAATAAATA
1 GTTTTAGTTACATTTTCTCCACGCGGCGTAACTCATTCGTTATTTACGTTTTAC-GAAATAAAAA
* * * * * * * * *
4984 ATTTTATATGATATTTGGTCGAATTTGCATTCAAATTCGAGGTGCAAGTGCGATAAGGGGTATCC
65 AATTGAAATGATACTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCAATAAGAGGCAACC
*
5049 TTTATATGAATAGACTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCATCCGATCC
130 TTTATATGAATAGACTACGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCATCCGATCC
5114 CATCAAAACTCCGCAGGTAAGCGTGCTTG
195 CATCAAAACTCCGCAGGTAAGCGTGCTTG
5143 G
1 G
5144 GTGAGAGTAG
Statistics
Matches: 201, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
222 1 0.00
223 198 0.99
224 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.31
Consensus pattern (223 bp):
GTTTTAGTTACATTTTCTCCACGCGGCGTAACTCATTCGTTATTTACGTTTTACGAAATAAAAAA
ATTGAAATGATACTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCAATAAGAGGCAACCT
TTATATGAATAGACTACGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCATCCGATCCC
ATCAAAACTCCGCAGGTAAGCGTGCTTG
Found at i:5422 original size:526 final size:526
Alignment explanation
Indices: 4423--5425 Score: 1431
Period size: 526 Copynumber: 1.9 Consensus size: 526
4413 TCCATGGTGC
*
4423 AACTCATTCGTTATTTGCGTTTTGCAAAATAAATAATTTGAAACGATATTTAGTCGAATTTGCAT
1 AACTCATTCGTTATTTACGTTTTGCAAAATAAATAATTTGAAACGATATTTAGTCGAATTTGCAT
* *
4488 TCAAATTCGAGGCGCAAGTGCGATAAGGGGCAACCTTTATATTAATAGATTGCGCAAGAGTTGAC
66 TCAAATTCGAGGCGCAAGTGCGATAAGGGGCAACCTTTATATGAATAGACTGCGCAAGAGTTGAC
* * * *
4553 GGGTGCGATCTTACCAGCACTAATGCATCCGATCCCATCAGAATCCCGCAGTTGAGCATGCTTGG
131 GGGTGCGATCATACCAGCACTAATGCATCCGATCCCATCAAAATCCCGCAGGTAAGCATGCTTGG
* * * *
4618 GCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTATTGCACCCATCCCATTTTAT
196 GCGAGAGTAGTACTAGGATGGCTGACCGCCTAGGAAGTCCTCATATTGCACCCATCCCATTTTAT
* * * *
4683 TTCATATAATGTTTGTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTT
261 TTCATATAAAGTTTGTTTTAGTTGCATTTTCTACACGTGGTGTAACTAATTAGTTATTTGCGTTT
* * **
4748 TACGAAATAAAAAAATTGAAATGATACTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCA
326 TACGAAATAAAAAAATTAAAACGATACTTGACCGAATTTGCATTCAAATTCGAGGCGCAAGTGCA
* * * * ** *
4813 ATAAGAGGCAACCTTTATATGAATAGAGTACGCAAGAGTTGACGGGTGTGATCCTACCAGCACTA
391 ATAAGAGGCAACCTTTAAATAAATAAAGTACGCAAGAGTGGACGGGTGCAATCCTACCAACACTA
*
4878 ATGCATCCGATCCCATCAGAACCCTGCAGTTAAGCGTGCTTGGTTTTAGTTATATTTTCTCCACG
456 AAGCATCCGATCCCATCAGAACCCTGCAGTTAAGCGTGCTTGGTTTTAGTTATATTTTCTCCACG
4943 CGGCGT
521 CGGCGT
* * * * *
4949 AACTCATTCGTTATTTACGTTTT-CTGAAATAAATAATTTTATATGATATTTGGTCGAATTTGCA
1 AACTCATTCGTTATTTACGTTTTGC-AAAATAAATAATTTGAAACGATATTTAGTCGAATTTGCA
* * *
5013 TTCAAATTCGAGGTGCAAGTGCGATAAGGGGTATCCTTTATATGAATAGACTGCGCAAGAGTTGA
65 TTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAACCTTTATATGAATAGACTGCGCAAGAGTTGA
*
5078 CGGGTGCGATCATACCAGCACTAATGCATCCGATCCCATCAAAA-CTCCGCAGGTAAGCGTGCTT
130 CGGGTGCGATCATACCAGCACTAATGCATCCGATCCCATCAAAATC-CCGCAGGTAAGCATGCTT
* * * *
5142 GGGTGAGAGTAGTACTAGGATGGCTGACCGCCTAGGAAGTCCTCATGTTGCACCCCTCCCGTTTT
194 GGGCGAGAGTAGTACTAGGATGGCTGACCGCCTAGGAAGTCCTCATATTGCACCCATCCCATTTT
* *
5207 ATTTCATATAAAG-TTGTTTTTCA-TTGCATTTTCTACACGTGGTGTAACTAATTAGTTCTTTTC
259 ATTTCATATAAAGTTTG-TTTT-AGTTGCATTTTCTACACGTGGTGTAACTAATTAGTTATTTGC
* * * * *
5270 GTTTTGCGAAATAAATAATTTAAAACGTTATTTGACCGAATTTGCATTCAAATTCGAGGCGCAAG
322 GTTTTACGAAATAAAAAAATTAAAACGATACTTGACCGAATTTGCATTCAAATTCGAGGCGCAAG
** * * * * *
5335 TGCAATAATTGGCAGCCTTTAAATAAATAAATTGCGCAAGAGTGGACGGGTGCAATCTTAGCAAC
387 TGCAATAAGAGGCAACCTTTAAATAAATAAAGTACGCAAGAGTGGACGGGTGCAATCCTACCAAC
*
5400 ACTAAAGCA-CCAGATGCCATCAGAAC
452 ACTAAAGCATCC-GATCCCATCAGAAC
5426 TCCGTAGTTA
Statistics
Matches: 417, Mismatches: 55, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
525 7 0.02
526 409 0.98
527 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (526 bp):
AACTCATTCGTTATTTACGTTTTGCAAAATAAATAATTTGAAACGATATTTAGTCGAATTTGCAT
TCAAATTCGAGGCGCAAGTGCGATAAGGGGCAACCTTTATATGAATAGACTGCGCAAGAGTTGAC
GGGTGCGATCATACCAGCACTAATGCATCCGATCCCATCAAAATCCCGCAGGTAAGCATGCTTGG
GCGAGAGTAGTACTAGGATGGCTGACCGCCTAGGAAGTCCTCATATTGCACCCATCCCATTTTAT
TTCATATAAAGTTTGTTTTAGTTGCATTTTCTACACGTGGTGTAACTAATTAGTTATTTGCGTTT
TACGAAATAAAAAAATTAAAACGATACTTGACCGAATTTGCATTCAAATTCGAGGCGCAAGTGCA
ATAAGAGGCAACCTTTAAATAAATAAAGTACGCAAGAGTGGACGGGTGCAATCCTACCAACACTA
AAGCATCCGATCCCATCAGAACCCTGCAGTTAAGCGTGCTTGGTTTTAGTTATATTTTCTCCACG
CGGCGT
Found at i:6635 original size:303 final size:303
Alignment explanation
Indices: 4921--6627 Score: 2069
Period size: 303 Copynumber: 5.6 Consensus size: 303
4911 GCGTGCTTGG
** * * * * *
4921 TTTTAGTTATATTTTCTCCACGCGGCGTAACTCATTCGTTATTTACGTTTT-CTGAAATAAATAA
1 TTTTAGTTGCATTTTCTACACGCGGTGTAACTAATTAGTTATTTTCGTTTTGC-GAAATAAATAA
* * * * * * *
4985 TTTTATATGATATTTGGTCGAATTTGCATTCAAATTCGAGGTGCAAGTGCGATAAGGGGTATCCT
65 TTTGAAAAGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCT
* *
5050 TTATATGAATAGACTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCATCC-GATCC
130 TTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCA-CCGGATCC
* * * * * * *
5114 CATCAAAACTCCGCAGGTAAGCGTGCTTGGGTGAGAGTAGTACTAGGATGGCTGACCGC-CTAGG
194 CATCAGAACTCCGTAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTCGAGG
* *
5178 AAGTCCTCATGTTGCACCCCTCCCGTTTTATTTCATATAAAGTTGT
259 AAGTCCTCGTGTTGCACCCCTCCCGTTTTATTTCGTATAAAGTT-T
* *
5224 TTTTCA-TTGCATTTTCTACACGTGGTGTAACTAATTAGTTCTTTTCGTTTTGCGAAATAAATAA
1 TTTT-AGTTGCATTTTCTACACGCGGTGTAACTAATTAGTTATTTTCGTTTTGCGAAATAAATAA
** * **
5288 TTT-AAAACGTTATTTGACCGAATTTGCATTCAAATTCGAGGCGCAAGTGCAATAATTGGCAGCC
65 TTTGAAAA-GTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCC
* * * * * * * * * *
5352 TTTAAATAAATAAATTGCGCAAGAGTGGACGGGTGCAATCTTAGCAACACTAAAGCACCAGATGC
129 TTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCC
* * * * *
5417 CATCAGAACTCCGTAGTTAA-CTGTACTTGGGCGAGAGTAATACTAGGATGGGTAACATCTTG-G
194 CATCAGAACTCCGTAGTTAAGC-GTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTCGAG
*
5480 GAAGTCCTCGTGTTGCACCCCTCCCGTTTTATTTCGTATCAAGTTT
258 GAAGTCCTCGTGTTGCACCCCTCCCGTTTTATTTCGTATAAAGTTT
* * * * * *
5526 TTTTTGTTGCATTTTCTTCACACGGTGTAAATAATTAGTTACTTTTCATTTTGCGAAATAAAAAA
1 TTTTAGTTGCATTTTCTACACGCGGTGTAACTAATTAGTTA-TTTTCGTTTTGCGAAATAAATAA
** ** * * * * * *
5591 TTACAAACTTTATTTGGTCGACTTTGCATTCAAATTCGAGGCGCAGGTGAGATAAAGGGCGGCAT
65 TTTGAAAAGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCT
* * * * * * *
5656 TTATATATATATAGATTACACAAGTGTTGACGAGTGCGATCATGCCAGCTCTAATGCACCGGATT
130 TTATATA-A-ATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATC
5721 CCATCAGAA-TGCCGTAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTC-A
193 CCATCAGAACT-CCGTAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTCGA
*
5784 GGAAGTCCTCGTGTTGCACCCCTCCCTTTTTATTTCGTATAAAGTTT
257 GGAAGTCCTCGTGTTGCACCCCTCCCGTTTTATTTCGTATAAAGTTT
* * * * * * *
5831 TTTTAGTTGCATTTTCTACACGTGGTGCAACTTATTAGTT-TTTCTTGTTTTACAAAATAAAAAA
1 TTTTAGTTGCATTTTCTACACGCGGTGTAACTAATTAGTTATTT-TCGTTTTGCGAAATAAATAA
* * * *
5895 TTTGAAATGTTATTTGGTCGAGTTTGCATTCAAATTCTAGGCGCAAGTGCGATAAAGGGCAGCCT
65 TTTGAAAAGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCT
* * * **
5960 TTATATAAATAGGTTGCGCAAGAGTTGACGGGTGCGATCATACCAGTACTAACGCAAGGGATCCC
130 TTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCC
* * * * * * *
6025 AACAGAAC-CCTGTAGTTCAGTGTGCTTGGGCGAGACTAGTACTAGGATGGCTAACCTC-CTAGG
195 ATCAGAACTCC-GTAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTCGAGG
**
6088 AAGTCCTCGTGTTGCACCCCTCCCGTTTTATTTATTATAAAGTTT
259 AAGTCCTCGTGTTGCACCCCTCCCGTTTTATTTCGTATAAAGTTT
* * * * * *
6133 TTTTAGTTTCTTTTTCTACATGCGGTGTAAATAATTAGTTATTTGCGCTTTGCGAAATAAATAAT
1 TTTTAGTTGCATTTTCTACACGCGGTGTAACTAATTAGTTATTTTCGTTTTGCGAAATAAATAAT
* * * *
6198 TTGTAACGTTATTTGGTCGAATTTCCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTT
66 TTGAAAAGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTT
* * *
6263 TATATATATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCTCTAACGCACCGGATCCCA
131 TATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCA
* * * * *
6328 TTAGAACTCTGCAGTTAAGCGTGCTTGGGTGAGAGTAGTACAAGGATGGGTGACCTCTCGA-GAA
196 TCAGAACTCCGTAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTCGAGGAA
* *
6392 ATCCTCGTGTTGCACCCCTCCCGTTTTATATC-TATAAAGTTT
261 GTCCTCGTGTTGCACCCCTCCCGTTTTATTTCGTATAAAGTTT
*
6434 TTTTGAAGTTGCATTTTCTACACGCGGTGTAACTTATTAGTTATTTTCGTTTTGCGAAATAAATA
1 TTTT--AGTTGCATTTTCTACACGCGGTGTAACTAATTAGTTATTTTCGTTTTGCGAAATAAATA
*
6499 ATTTGAAAAGTTACTTT-GTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGT
64 ATTTGAAAAGTTA-TTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGC
* *
6563 CTTTATATAAATAGATTGCGCAAGA-TATGACGGGTGTGATCATACCAGCACTAATGCAACGGAT
128 CTTTATATAAATAGATTGCGCAAGAGT-TGACGGGTGCGATCATACCAGCACTAATGCACCGGAT
6627 C
192 C
6628 GCATTAGACC
Statistics
Matches: 1189, Mismatches: 190, Indels: 50
0.83 0.13 0.03
Matches are distributed among these distances:
301 17 0.01
302 420 0.35
303 492 0.41
304 88 0.07
305 171 0.14
306 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (303 bp):
TTTTAGTTGCATTTTCTACACGCGGTGTAACTAATTAGTTATTTTCGTTTTGCGAAATAAATAAT
TTGAAAAGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTT
TATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCA
TCAGAACTCCGTAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTCGAGGAA
GTCCTCGTGTTGCACCCCTCCCGTTTTATTTCGTATAAAGTTT
Found at i:16152 original size:302 final size:302
Alignment explanation
Indices: 15557--19697 Score: 5852
Period size: 302 Copynumber: 13.6 Consensus size: 302
15547 ACAACTACAA
*
15557 GAAGTCCTCGTCTTGCA-CCCTCCCATTTTATTTCATATAATGTTTTTTTTTAGTTGCGTTTTCT
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATG--TTTTTTTAGTTGCGTTTTCT
* * *
15621 CCACGTGGTCTAACTCATTCGTTATTTGCGTTTTGCTAAATAAATAATTTGAAACAATATTTGGT
64 CCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGT
* * * * *
15686 CGAATTTGCATTCAAATTCTAGGTGCAAGTGCGATAAGAGTCAGCCTTTATATGACTAGATGTCG
129 CGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTTCG
* *
15751 CAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATTAGAACTCCACAGTTA
194 CAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTA
* *
15816 AGCGTGCTTGGGCGAAAGTAGTAGTAGGTTGGGTGACCTCTTGG
259 AGCGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCTTGG
*
15860 GAAGTCCTCGTGTTGAACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
* *
15925 ACGTGGTGTAACTCATTCGTTATTTTCGTTTTGCAAAATAAATAATTTGAAACGATATTTGGTCG
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
* * * * * *
15990 AATTTACATTCAAATTCTAGGCACAAGTGCGATAAGCGTCAGCCTTTATATGACTAGATTTCGCA
131 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTTCGCA
* *
16055 AGAGTTGACGGGTGCGATCATACCAGCACTAATACACCGGATCCCATCAGAACTCTGCAGTTAAG
196 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
* * *
16120 GGTGCTTGGGCGAGAGTAGTACTAGATTGGGTGACCTCCTGG
261 CGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCTTGG
* * ** *
16162 GAAGTCCTGGTGTTGCACCCCTCCCATTATATTTCATGGAATGTTTTTTTAGTTGTGTTTTCTCC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
* *
16227 ACGTGGTGTAACTCATTCGTTATTTACGTTTTACGAAATAAATAATTTGAAACGATATTTGGTCG
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
* * * *
16292 AATTTGTATTCAAATTCGAGGCGCAAGTGCGATAAGAGGAAGCATTTATATGAAAAGATTGT-GC
131 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATT-TCGC
* *
16356 AAGAGTTGACGGATGCAATCATACCAGCACTAATGCACCGGATCCCATCAGAGA-TCCGCAGTTA
195 AAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGA-ACTCCGCAGTTA
* *
16420 AGCGTGCTTGGGTGAGAGTAGTACTAGGTTGGGTGACCT-TCTAG
259 AGCGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCT-TGG
* * * *
16464 GAAGTCCTGGTGTTGCACCCCTCACATTTTATTTCATAGAATGTTTTTTTAGTTGTGTTTTCTCC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
16529 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAAT-AATAAATTTGAAACGATATTTGGTC
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAAT-AATTTGAAACGATATTTGGTC
* * * * * *
16593 GAATTTGTATTCAAATTTGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATAGGAAAAGATTGCAC
130 GAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTTCGC
* *
16658 AAGAGTTGACGGGTGCAATCATACCAGCACTAATGCACCAGATCCCATCAGAACTCCGCAGTTAA
195 AAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAA
* * * * *
16723 GCGCGCTTGGGCAAGAGTAGTACTAGGTTGGGTGGCCTCCTAG
260 GCGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCTTGG
*
16766 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATAGAATGTTTTTTTAGTTGCGTTTTCTCC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
* *
16831 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACAATATTTGGTCT
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
* *
16896 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGA-GCTAGTCTTTATATGACTAGATTTCGC
131 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGC-AGCCTTTATATGAATAGATTTCGC
* * *
16960 AAGTGTTGACGGGTGCGATCATACCAGCACTAATGCACTGGATCCCGTCAGAACTCCGCAGTTAA
195 AAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAA
*
17025 GCGTGCTTGGGCGAGAGTAGTACTAAGTTGGGTGACCTCTTGG
260 GCGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCTTGG
*
17068 GAAGTCCTCGTGTTGAACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
* * *
17133 ACGTGGCGTAACTCTTTCGTTATTTTCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
** ** * * *
17198 AATTTGCATTCAAATTCTCGGAACAAGTGCGATAAGCGTCAGCCTTTATATGACTAGATTTCGCA
131 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTTCGCA
* * *
17263 AGAATTGACGGGTGCGATCATACCAGCACTAATACACCGGATCCCATCAGAACTCCGCAGTGAAG
196 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
* *
17328 CGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCGTAG
261 CGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCTTGG
* * * * *
17370 GAAGTCCTGGGGTTGCACCCCTCCCATTATATTTCATAGAATGTTTTTTTAGTTGTGTTTTCTCC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
*
17435 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTACGAAATAAATAATTTGAAACGATATTTGGTCG
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
* * *
17500 AATTTGTATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCATTTATATGAAAAGATTGT-GC
131 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATT-TCGC
*
17564 AAGAGTTGACGGGTGCAATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAA
195 AAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAA
* * *
17629 GCGTCCTTGGGCGAGAGTAGTACTACGATGGGTGACCTCTTGG
260 GCGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCTTGG
*
17672 GAAGTCCTCGTGCTGCACCCCTCCCATTTTATTTTCATATAATGTTTTTTTTAGTTGCGTTTTCT
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTA-TTTCATATAATG-TTTTTTTAGTTGCGTTTTCT
*
17737 CCACGTGGTGTAACTCATTCGTTATTTGCGTTTTCCGAAATAAATAATTTTG-AACGATATTTGG
64 CCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAA-TTTGAAACGATATTTGG
* * * * * *
17801 TCGAATTTGCATTTAAATTCGAGGCGTAAGTGTGATATGGGGCAGCCTTTATATGAATAGATTGC
128 TCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTTC
* * * * *
17866 GCAAGAGTTGATGCGTGCGATCTTACCAGCACTAATGCACCGGATCCTATCAGAACTCCGTAGTT
193 GCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTT
* * * * ** *
17931 AAGCGTGCTTGGGTGAGAGTAGTACTCTGAAGTTAAGCGTG-CTTGGGTGA
258 AAGCGTGCTTGGGCGAGAGTAGTA--CT-AGGTT--GGGTGACCT-CTTGG
* * * * *** * * * **
17981 GACTAGTACTAG-GTTGGGTGACCTTCTGGGAAGTCCTGGTGTTGCACCCCTCAGAT-TTTATTT
1 GA--AGTCCTCGTGTT--G-CACC-CCT-CCCA-T--T-TTATTTCA--TAT-A-ATGTTT-TTT
* * ** * ** * **
18044 CA-TAGAATATTTTTTTA-GTTGTGTTTTCTCCACGTAGT-GTAACTCATTCGTTATTTGCGTTT
50 TAGTTGCGT-TTTCTCCACGTGGTG-TAACT-CA--T--TCGT---T-A-T--TT----GCGTTT
* * * *
18106 TACGAAATAAATAATTTGAAACGATATTTGCTCGAATTTGTATTCGAATTCGAGGCGCAAGTGCG
97 TGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCG
* * * * *
18171 ATAAGAGGTAGCCTTTATATGAAAAGATTGCACAAGAGTTGACGGGTGCAATCATACCAGCACTA
162 ATAAGAGGCAGCCTTTATATGAATAGATTTCGCAAGAGTTGACGGGTGCGATCATACCAGCACTA
18236 ATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGTTGGG
227 ATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGTTGGG
* *
18301 TGACCTCCTAG
292 TGACCTCTTGG
* * ** *
18312 GAAGTTCTCGTGTTGCACCCGTCCCATTTTATTTCATAGGATG-TTTTTTAGTTGTGTTTTCTCC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
*
18376 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACAATATTTGGTCG
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
* *
18441 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGA-GCTAGTCTTTATATGACTAGATTTCGC
131 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGC-AGCCTTTATATGAATAGATTTCGC
*
18505 AAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACTGGATCCCATCAGAACTCCGCAGTTAA
195 AAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAA
* *
18570 GCTTGCTTGGGCGAGAGTAGTACTAAGTTGGGTGACCTCTTGG
260 GCGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCTTGG
*
18613 GAAGTCCTCGTGTTGAACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
* * * *
18678 ACGTGGCGTAACTCTTTCGTTATTTTCGTTTTGCGAAATAAATAACTTGAAACGATATTTGGTCG
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
* *
18743 AATTTGCATTCAAATTCGAGGCGCAAGTGCAATAAGAGGCAGCCTTTATATGAATAGATTGCGCA
131 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTTCGCA
* * *
18808 AGAGTTGACGGGTACGATCATAGCAGCACTAATGCACCGGATCCCATCAGAACTTCGCAGTTAAG
196 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
* *
18873 CGTGCTTGGGCGAGAGTAGTACTAGGTTAGGTGACCTCCTGG
261 CGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCTTGG
* * *
18915 GAAGTCCTCTTGTCGCACCCCTCCCATTTTATTTAATATAATGTTTTTTTAGTTGCGTTTTCTCC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
* * *
18980 ACGTGGTGTAACTCATTCGTTATTTTCGTTTTGCGAAAGAAACAATTTGAAACGATATTTGGTCG
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
*
19045 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCA
131 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTTCGCA
* * * * *
19110 AGAGTTTACGGGTACGATCATAGCAGCACTAATGCACCGGATCCCATCAGAACTTCACAGTTAAG
196 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
*
19175 CGTGCTTGGGCGAGAGCAGTACTAGGTTGGGTGACCT-TCTGG
261 CGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCT-TGG
* * *
19217 GAAGTCCTGGTGTTGCACCCCTCACATTTTATTTCATATAATGTTTTTTTAGTTGTGTTTTCTCC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
19282 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
* *
19347 AATTTGCATTCAAATTCGAGGCGCAAGTGCAATAAGAGGCAGCCTTTATATGAATAGATTGCGCA
131 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTTCGCA
* *
19412 AGAGTTGACGGGTACGATCATAGCAGCACTAATGCACCGGAT-CCACTCAGAACTCCGCAGTTAA
196 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCA-TCAGAACTCCGCAGTTAA
* *
19476 GCGTACTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCTGG
260 GCGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCTTGG
* * *
19519 GAAGTCCTCGCGTCGCACCCCTCCCATTTTATTTAATATAATGTTTTTTTAGTTGCGTTTTCTCC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
* * *
19584 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCAAAATAAATAATATGAAACGATACTTGGTCG
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
*
19649 AATTTGCATTCAAATTCGGGGCGCAAGTGCGATAAGAGGCAGCCTTTAT
131 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTAT
19698 GCGAGAGTAG
Statistics
Matches: 3440, Mismatches: 329, Indels: 139
0.88 0.08 0.04
Matches are distributed among these distances:
300 1 0.00
301 240 0.07
302 2604 0.76
303 35 0.01
304 238 0.07
305 6 0.00
306 2 0.00
307 4 0.00
308 3 0.00
309 9 0.00
310 2 0.00
311 7 0.00
312 3 0.00
313 4 0.00
314 2 0.00
315 3 0.00
316 13 0.00
317 12 0.00
318 5 0.00
319 1 0.00
320 12 0.00
321 18 0.01
322 5 0.00
324 2 0.00
325 3 0.00
326 2 0.00
327 3 0.00
328 2 0.00
329 7 0.00
330 4 0.00
331 7 0.00
332 4 0.00
333 4 0.00
334 2 0.00
335 4 0.00
336 167 0.05
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (302 bp):
GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTTCGCA
AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
CGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCTTGG
Found at i:16756 original size:604 final size:604
Alignment explanation
Indices: 15557--29911 Score: 13508
Period size: 604 Copynumber: 23.5 Consensus size: 604
15547 ACAACTACAA
*
15557 GAAGTCCTCGTCTTGCA-CCCTCCCATTTTATTTCATATAATGTTTTTTTTTAGTTGCGTTTTCT
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATG--TTTTTTTAGTTGCGTTTTCT
* * *
15621 CCACGTGGTCTAACTCATTCGTTATTTGCGTTTTGCTAAATAAATAATTTGAAACAATATTTGGT
64 CCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGT
* * * *
15686 CGAATTTGCATTCAAATTCTAGGTGCAAGTGCGATAAGAGTCAGCCTTTATATGACTAGA-TGTC
129 CGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTG-C
* *
15750 GCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATTAGAACTCCACAGTT
193 GCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTT
* * * *
15815 AAGCGTGCTTGGGCGAAAGTAGTAGTAGGTTGGGTGACCTCTTGGGAAGTCCTCGTGTTGAACCC
258 AAGCGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCC
15880 CTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGT
323 CTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGT
* * * *
15945 TATTTTCGTTTTGCAAAATAAATAATTTGAAACGATATTTGGTCGAATTTACATTCAAATTCTAG
388 TATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAG
* * * * *
16010 GCACAAGTGCGATAAGCGTCAGCCTTTATATGACTAGATTTCGCAAGAGTTGACGGGTGCGATCA
453 GCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
* * *
16075 TACCAGCACTAATACACCGGATCCCATCAGAACTCTGCAGTTAAGGGTGCTTGGGCGAGAGTAGT
518 TACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGT
*
16140 ACTAGATTGGGTGACCTCCTGG
583 ACTAGGTTGGGTGACCTCCTGG
* * ** *
16162 GAAGTCCTGGTGTTGCACCCCTCCCATTATATTTCATGGAATGTTTTTTTAGTTGTGTTTTCTCC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
* *
16227 ACGTGGTGTAACTCATTCGTTATTTACGTTTTACGAAATAAATAATTTGAAACGATATTTGGTCG
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
* * * * *
16292 AATTTGTATTCAAATTCGAGGCGCAAGTGCGATAAGAGGAAGCATTTATATGAAAAGATTGTGCA
131 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCA
* *
16357 AGAGTTGACGGATGCAATCATACCAGCACTAATGCACCGGATCCCATCAGAGA-TCCGCAGTTAA
196 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGA-ACTCCGCAGTTAA
* * * *
16421 GCGTGCTTGGGTGAGAGTAGTACTAGGTTGGGTGACCTTCTAGGAAGTCCTGGTGTTGCACCCCT
260 GCGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCT
* * *
16486 CACATTTTATTTCATAGAATGTTTTTTTAGTTGTGTTTTCTCCACGTGGTGTAACTCATTCGTTA
325 CCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTA
* *
16551 TTTGCGTTTTGCGAAAT-AATAAATTTGAAACGATATTTGGTCGAATTTGTATTCAAATTTGAGG
390 TTTGCGTTTTGCGAAATAAAT-AATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAGG
* * * *
16615 CGCAAGTGCGATAAGAGGCAGCCTTTATAGGAAAAGATTGCACAAGAGTTGACGGGTGCAATCAT
454 CGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCAT
* * *
16680 ACCAGCACTAATGCACCAGATCCCATCAGAACTCCGCAGTTAAGCGCGCTTGGGCAAGAGTAGTA
519 ACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTA
* *
16745 CTAGGTTGGGTGGCCTCCTAG
584 CTAGGTTGGGTGACCTCCTGG
*
16766 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATAGAATGTTTTTTTAGTTGCGTTTTCTCC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
* *
16831 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACAATATTTGGTCT
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
* * *
16896 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGA-GCTAGTCTTTATATGACTAGATTTCGC
131 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGC-AGCCTTTATATGAATAGATTGCGC
* * *
16960 AAGTGTTGACGGGTGCGATCATACCAGCACTAATGCACTGGATCCCGTCAGAACTCCGCAGTTAA
195 AAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAA
* * *
17025 GCGTGCTTGGGCGAGAGTAGTACTAAGTTGGGTGACCTCTTGGGAAGTCCTCGTGTTGAACCCCT
260 GCGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCT
* *
17090 CCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACGTGGCGTAACTCTTTCGTTA
325 CCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTA
* ** *
17155 TTTTCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCTCGGA
390 TTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAGGC
* * * * * *
17220 ACAAGTGCGATAAGCGTCAGCCTTTATATGACTAGATTTCGCAAGAATTGACGGGTGCGATCATA
455 GCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATA
* *
17285 CCAGCACTAATACACCGGATCCCATCAGAACTCCGCAGTGAAGCGTGCTTGGGCGAGAGTAGTAC
520 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
* *
17350 TAGGTTGGGTGACCTCGTAG
585 TAGGTTGGGTGACCTCCTGG
* * * * *
17370 GAAGTCCTGGGGTTGCACCCCTCCCATTATATTTCATAGAATGTTTTTTTAGTTGTGTTTTCTCC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
*
17435 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTACGAAATAAATAATTTGAAACGATATTTGGTCG
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
* * * *
17500 AATTTGTATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCATTTATATGAAAAGATTGTGCA
131 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCA
*
17565 AGAGTTGACGGGTGCAATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
196 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
* * * * *
17630 CGTCCTTGGGCGAGAGTAGTACTACGATGGGTGACCTCTTGGGAAGTCCTCGTGCTGCACCCCTC
261 CGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC
17695 CCATTTTATTTTCATATAATGTTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTT
326 CCATTTTA-TTTCATATAATG-TTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTT
* *
17760 ATTTGCGTTTTCCGAAATAAATAATTTTG-AACGATATTTGGTCGAATTTGCATTTAAATTCGAG
389 ATTTGCGTTTTGCGAAATAAATAA-TTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAG
* * * * * * *
17824 GCGTAAGTGTGATATGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGATGCGTGCGATCT
453 GCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
* *
17889 TACCAGCACTAATGCACCGGATCCTATCAGAACTCCGTAGTTAAGCGTGCTTGGGTGAGAGTAGT
518 TACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGC-T---T--G-G--G-
*
17954 ACTCTGAAGTTAAGCGTGCTTGGGTGAGACTAGTACTAGGTTGGGTGACCTTCTGG
573 ---C----G---A------------GAG--TAGTACTAGGTTGGGTGACCTCCTGG
* ** * * *
18010 GAAGTCCTGGTGTTGCACCCCTCAGATTTTATTTCATAGAATATTTTTTTAGTTGTGTTTTCTCC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
* * *
18075 ACGTAGTGTAACTCATTCGTTATTTGCGTTTTACGAAATAAATAATTTGAAACGATATTTGCTCG
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
* * * * *
18140 AATTTGTATTCGAATTCGAGGCGCAAGTGCGATAAGAGGTAGCCTTTATATGAAAAGATTGCACA
131 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCA
*
18205 AGAGTTGACGGGTGCAATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
196 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
* * *
18270 CGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCTAGGAAGTTCTCGTGTTGCACCCGTC
261 CGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC
** *
18335 CCATTTTATTTCATAGGATG-TTTTTTAGTTGTGTTTTCTCCACGTGGTGTAACTCATTCGTTAT
326 CCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTAT
*
18399 TTGCGTTTTGCGAAATAAATAATTTGAAACAATATTTGGTCGAATTTGCATTCAAATTCGAGGCG
391 TTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCG
* * *
18464 CAAGTGCGATAAGA-GCTAGTCTTTATATGACTAGATTTCGCAAGAGTTGACGGGTGCGATCATA
456 CAAGTGCGATAAGAGGC-AGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATA
* *
18528 CCAGCACTAATGCACTGGATCCCATCAGAACTCCGCAGTTAAGCTTGCTTGGGCGAGAGTAGTAC
520 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
* *
18593 TAAGTTGGGTGACCTCTTGG
585 TAGGTTGGGTGACCTCCTGG
*
18613 GAAGTCCTCGTGTTGAACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
* * * *
18678 ACGTGGCGTAACTCTTTCGTTATTTTCGTTTTGCGAAATAAATAACTTGAAACGATATTTGGTCG
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
*
18743 AATTTGCATTCAAATTCGAGGCGCAAGTGCAATAAGAGGCAGCCTTTATATGAATAGATTGCGCA
131 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCA
* * *
18808 AGAGTTGACGGGTACGATCATAGCAGCACTAATGCACCGGATCCCATCAGAACTTCGCAGTTAAG
196 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
* * *
18873 CGTGCTTGGGCGAGAGTAGTACTAGGTTAGGTGACCTCCTGGGAAGTCCTCTTGTCGCACCCCTC
261 CGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC
*
18938 CCATTTTATTTAATATAATGTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTAT
326 CCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTAT
* * *
19003 TTTCGTTTTGCGAAAGAAACAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCG
391 TTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCG
* * *
19068 CAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTTACGGGTACGATCATAG
456 CAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATAC
* * *
19133 CAGCACTAATGCACCGGATCCCATCAGAACTTCACAGTTAAGCGTGCTTGGGCGAGAGCAGTACT
521 CAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACT
*
19198 AGGTTGGGTGACCTTCTGG
586 AGGTTGGGTGACCTCCTGG
* * *
19217 GAAGTCCTGGTGTTGCACCCCTCACATTTTATTTCATATAATGTTTTTTTAGTTGTGTTTTCTCC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
19282 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
*
19347 AATTTGCATTCAAATTCGAGGCGCAAGTGCAATAAGAGGCAGCCTTTATATGAATAGATTGCGCA
131 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCA
* *
19412 AGAGTTGACGGGTACGATCATAGCAGCACTAATGCACCGGAT-CCACTCAGAACTCCGCAGTTAA
196 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCA-TCAGAACTCCGCAGTTAA
* * *
19476 GCGTACTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGCGTCGCACCCCT
260 GCGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCT
*
19541 CCCATTTTATTTAATATAATGTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTA
325 CCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTA
* * * *
19606 TTTGCGTTTTGCAAAATAAATAATATGAAACGATACTTGGTCGAATTTGCATTCAAATTCGGGGC
390 TTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAGGC
** * * ** * *
19671 GCAAGTGCGATAAGAGGCAGCCTTTATGCG-AGAG-TAGTACTAG-GTT---GGGT--GA-CCT-
455 GCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATA
* ** * ** * * ***** *
19726 CCTG--GGAA-GTC-CTCGCG-TCGCA-C--CCCTCC-CATTTTA---T--TTAATATA-ATGTT
520 CCAGCACTAATG-CAC-CG-GATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGA-GTA
* ** * ***
19776 TTTTTA-GTTGTGTTTTCTCCACATGG
581 GTACTAGGTTGGGTGACCT-C-C-TGG
* * * *** ** *** ** * * * ** * * **
19802 TGTAACTCATTCGTTATTTG--CGTTTTGCAAAATAAATAATATGAAACG-ATACTTGGTCGAAT
1 -G-AAGTC-CTCG-T-GTTGCACCCCTCCCATTTTATTTCATAT--AATGTTTTTTTAGTTGCGT
* * * * * * ** * * * *
19864 TTGCATTCAAATTCGAGGCGCAAGTGCAATAAG--A--GGCAGCCTTT---ATATTAATAGATTG
59 TTTC--TC-CA--CGTGGTGTAACT-C-ATTCGTTATTTGC-G-TTTTGCGAAATAAATA-ATT-
* * * * * * * * * *
19922 CGCAA-GAGT-TTACGGGTACG-ATCATAGCA-GCACTAATGC-A--CTG-GA-TCCCATCAGAA
113 TGAAACGA-TATT--TGGT-CGAAT--TTGCATTCA--AATTCGAGGC-GCAAGTGCGATAAG-A
** ** ** * * ** ** ***
19978 CTTCA-CAGTTA-A-GCGT-GCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTTC-TGGGAAGT
168 -GGCAGCCTTTATATGAATAGATTGCGC-A-AG-AGT--T--GACGGGTG-CGATCAT-ACCAG-
** ** * *** * * ** * * ** * ** * ** ** *
20038 C-CTGGTGTTGCACC-CCTCACAT-TTTATTTCATA-TAAAGCTTTTTTAGTTGTGTTTTCT-CC
222 CAC---TAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACT
* * * * ** * ** * ** ** * * * ** *
20098 ACG-T-GGTGTAACTCATTCGTTATTTGT-GTTTTGCGA--AAT---AAATAATTTGAAACGATA
284 AGGTTGGGTG-ACCTC-CTGGGAAGTCCTCGTGTTGC-ACCCCTCCCATTTTATTTCATATAATG
*** * * * * * ** ** * * **
20155 TTTGGTCGAATTTGCATTCCAATTCGAGGCGCAAGTGCGAT-AAGAGGCAGCCTTTATATGAATA
346 TTT--TTTTAGTTGCGTT----TTC---TC-CACGTG-G-TGTA-ACTCATTCGTTATTTGCGT-
* * * ** * ** ** * * * ** *
20219 GATTGCGCAAGAGTTGA-CGGGTACGATCA-TAGCAGCACTAATGCACCGGATCCCCTCAGAACT
397 -TTTGCGAAATAAATAATTTGAAACGAT-ATTTG--G-TCGAAT---TTGCAT----TCA-AA-T
** * * *** ** *
20282 TCGCAGTTAAGCGTGCTTGGGCG---AGA-GCAGTACTAGGT-TGGGT-GACCTCCTG-GGAAGT
448 TCG-AG----GC--GCAAGTGCGATAAGAGGCAG-CCTTTATATGAATAGA--T--TGCGCAAG-
* ***** * ** * * * **
20340 CCTCGTGCTGCACCCCCCCCATTCTATTTCA-TA-TAATGTTTTTTTAGTTGCGTTTTCTCCA-C
500 ---AGT--TG-ACGGGTGCGA-TC-ATACCAGCACTAATG------CA---CCG-GATC-CCATC
** * ** * * * * * *
20402 ATGGTGTAACTCATTC-GTTATTTGCGT--TT-TAC-AAAATAAATAATTTGAAACGATCGGGT-
546 A----G-AACTC-CGCAGTTA--AGCGTGCTTGGGCGAGAGT-AGT-A-CT---A-GGTTGGGTG
* * *
20461 ACGATCAT-A
596 AC-CTCCTGG
* * ** ** * *** * ** ** * ***
20470 GCAG--CAC-TAATGCACCGGATCCCCTCAGAACTTCGCAGT-TAA-GCGTGCTT-G-GGCGAGA
1 GAAGTCCTCGTGTTGCACC-CCTCCCAT-TTTA-TT-TCA-TATAATGTTTTTTTAGTTGCGTTT
* * * * * * ** * ** **** * *
20528 GCAGTACTAGGTTGG-GTGACCTC-CTGGGAAGTCCT-CGTGCTGC-ACCCCCCCCATTCTATTT
61 TC--T-CCACG-TGGTGT-AACTCATTCGTTA-T-TTGCGTTTTGCGA----AATAAAT-AATTT
* * * * * * ** * * * * * * * ***
20589 CATATAATGTTTTTTTAGTTGCGTTTTC-TCCACATGGT-GTA-ACTC-A-TTCG-TTATTTGC-
114 --GA-AACG-ATATTTGGTCGAATTTGCATTCAAAT--TCG-AGGCGCAAGTGCGATAAGAGGCA
* * * * * * *
20647 G-TTTTACAAAATAAATA-ATT-TG-AA-A--CGATCGGGTACGATCATAGCAGCACTAATGCAC
172 GCCTTT---ATATGAATAGATTGCGCAAGAGTTGA-CGGGTGCGATCATACCAGCACTAATGCAC
* * *
20705 CGGATCCCCTCAGAACTTCGCAGTTAAGCGTGCTTGGGCGAGAGCAGTACTAGGTTGGGTGACCT
233 CGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCT
* * *
20770 CCTGGGAAGTCCTCGTGCTGCACCCCCCCCATTCTATTTCATATAATGTTTTTTTAGTTGCGTTT
298 CCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTT
* * * **
20835 TCTCCACATGGTGTAACTCATTCGTTATTTGCGTTTTACAAAATAAATAATTTGAAACG--ATCG
363 TCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTT
* * * * * * ** * * * ** *
20898 GGTACG-ATCATAGCA-GCACTAATGC-A-CCG-GA-TCCCCTCAGA-ACTTCGCAGTTA-A-GC
428 GGT-CGAAT--TTGCATTCA--AATTCGAGGCGCAAGTGCGATAAGAGGC--AGCCTTTATATGA
* * * * ** * * * * * * * *
20954 GT-GCTTGGGCGAGAGCAGTACTAGGTTG-GGT--GACC-TC-CT--GGGA--AG-TCCTCGTGC
486 ATAGATTGCGCAAGAGTTG-AC--GGGTGCGATCATACCAGCACTAATGCACCGGATCC-CAT-C
* * * * ** ***** ** ** * ***
21008 TGCACCCCCCCCA-TT---C-TATTTCATATA-ATGTTTTTTTA-GTTGCGTTTTCTCCACATGG
546 AG-A-ACTCCGCAGTTAAGCGTGCTTGGGCGAGA-GTAGTACTAGGTTGGGTGACCT-C-C-TGG
* * * **** ** * * * * ** **** *
21066 TGTAACTCATTCGTTATTTGC-GTTTTACAAAATAAATAATTTGAAACGATCGGGTACGATCA-T
1 -G-AAGTC-CTCG-T-GTTGCACCCCT-C-CCAT--TTTATTTCATATAAT---GTTTTTTTAGT
* ** ** * * *** * * *
21129 AGCAGCACTAATGCACCG-GAT-CCCCTCAGAACTTCG-CAGTTAAGCGTGCTTGGGCGAGAGCA
54 TGC-G-TTTTCTCCA-CGTGGTGTAACTC---A-TTCGTTA-TT-TGCGT--TT-TGCGA-A--A
* ** *** ** * * * * ** *
21191 GT-ACTAGGTTG-GGTGACCTCCTGG--GAAGTCCTCGTGC-TGCACCCCCCCCATTCTATTTCA
104 -TAAATAATTTGAAACGATAT-TTGGTCGAA-T--T--TGCATTCA-------AATTCGA-GGCG
* * *** *** ** * * * * * * *** **
21251 TATAATGTTTTTTTA-GTTGCGTTT-TCTCCACAT-GGTGTAACTCATTCGTT-A--TTTGCG-T
154 CA-AGTGCGATAAGAGGCAGCCTTTATAT-GA-ATAGAT-T-GCGCAAGAGTTGACGGGTGCGAT
** * ** * * * *** * * * ***
21309 TTTACAAAATAAATAATTTGAAAC-GATCGGGT-ACGATCAT-AGCAGCACTAA---TGCACCGG
214 CATAC--CAGCACTAA--TGCACCGGATCCCATCA-GAAC-TCCGCAG--TTAAGCGTGCTTGGG
****** * * * * * * * *
21368 ATCCCCTCAGAACTTCGCAGTTAAGCGTG-CTTGGGC-GAGAGCAGTACTAGGTTGGGTGACCTC
271 CGAGAGT-AGTAC-TAG--GTT--GGGTGACCT--CCTG-G-GAAGT-C----CTC---------
* *
21431 CTGGGAAGTCCTCGTGCTGCACCCCCCCCATTCTATTTCATATAATGTTTTTTTAGTTGCGTTTT
312 -------G---T-GT--TGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTT
* * *
21496 CTCCACATGGTGTAACTCATTCGTTATTTGCGTTTTACAAAATAAATAATTTGAAACGATATTTG
364 CTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTG
* ** ** * ** ** **
21561 GTCGAATTTAG-GTT-AGGTGACCTCCTGG-G-AAGTCCTCG-TGCTGCACCCCCCCCATTCTAT
429 GTCGAATTT-GCATTCA----AATTCGAGGCGCAAGT--GCGAT-AAG-A-GGCAGCC-TT-TAT
* * ****** ** * * *** * *
21621 TTCATATA-A-TGTTTTTTTAGTTG-CGTTTTC--TC-CA-CATGGTGTAACT-CATTCGTTATT
482 ATGA-ATAGATTG-CGCAAGAGTTGACGGGTGCGATCATACCA-GCACTAA-TGCA-CCG-GA--
*** * **** * * ** * *
21678 TGCGTTTTACA-AAATAAATAATTTGAAACGATATTTGGTCGA-A-T--T--TAGGTTAGGTGAC
539 T-C-CCAT-CAGAACT-CCGCAGTT-AAGCG-TGCTTGGGCGAGAGTAGTACTAGGTTGGGTGAC
21736 CTCCTGG
598 CTCCTGG
* * *
21743 GAAGTCCTCGTGCTGCACCCCCCCCATTCTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
* * *
21808 ACATGGTGTAACTCATTCGTTATTTGCGTTTTACAAAATAAATAATTTGAAACGATATTTGGTCG
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
* * * *
21873 AATTTGCATTCAAATTCGACGCGCAGGTGCGGTAAGAGGCAGCCTTTAGATGAATAGATTGCGCA
131 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCA
* * *
21938 AGAGTTGACGGGTACGATCATAGCAGCACTAATGCACCGGATCCCATCAGAACTTCGCAGTTAAG
196 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
* * *
22003 CGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTTCT-GGATGTCCTGGTGTTGCACCCCTC
261 CGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC
* * *
22067 ACATTTTATTTCATATAATGCTTTTTTAGTTGTGTTTTCTCCACGTGGTGTAACTCATTCGTTAT
326 CCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTAT
* * *
22132 TTGAGTTTTACGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCCAATTCGAGGCG
391 TTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCG
* *
22197 CAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTACGATCATAG
456 CAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATAC
* * * * *
22262 CAGCACTAATGCACCGAATCCCCTCAGAAGTTCGCAGTTAAGCGTGCTTGGGCGAGAGCAGTACT
521 CAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACT
*
22327 AGGTTGGTTGACCTCCTGG
586 AGGTTGGGTGACCTCCTGG
*
22346 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCT
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
* *
22411 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTACGAAATAAATAAATTGAAACGATATTTGGTCG
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
*
22476 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGTATAGATTGC-CA
131 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCA
* * * ** *
22540 AGTGTTGACGGGTGCGATAATACCAGCACTAATGCCCCGGATCCCATTTGAACTCCGCAGCTAAG
196 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
* * * *
22605 CGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTAGGAAGTCCTCATGTTGCACCCCTC
261 CGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC
* * * * * *
22670 CTATTTCATTTCATATAATG-CTTTTTATTTGTGTTTTCTCCACATGGTGTAACTCATTCGTTAT
326 CCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTAT
* *
22734 TTGAC-TTTTGTGAAATAAATAATTTGAAACGATATTTGTTCGAATTTGCATTCAAATTCGAGGC
391 TTG-CGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAGGC
* *
22798 GCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGTGCAAGAGTTGACGGGTACGATCATA
455 GCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATA
* * * *
22863 GCAGCACTAATGCACCGGATCCCATCAGAAATTCGCAGTTAAACGTGCTTGGGCGAGAGTAGTAC
520 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
22928 TAGGTTGGGTGACCTCCTGG
585 TAGGTTGGGTGACCTCCTGG
* * *
22948 GAAGTTCTCGTGTCGCACCCCTCCCATTTTATTTAATATAATGTTTTTTTAGTTGCGTTTTCTCC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
* * * * *
23013 ACGTGGTGTAACTCATTCGTTATTTACATTTTTCGAAATTAATAATTTGAAACGATATTTGTTCG
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
*
23078 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGTGCA
131 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCA
* * * * *
23143 AGAGTTGACGGGTACGATCATAGCAGCACTAATGCACCGGATCCCATCAGAAATTCGCAGTTAAA
196 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
* *
23208 CGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTTCTCGTGTCGCACCCCTC
261 CGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC
*
23273 CCATTTTATTTAATATAATGTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTAT
326 CCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTAT
* * * * *
23338 TTACATTTTTCGAAATTAATAATTTGAAACGATATTTGGTCGAATTTGCA-TCTAAATTCTAGGC
391 TTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTC-AAATTCGAGGC
* * * * * *
23402 GCAAGTGCGATAAAAGCCAGCCTTTATATGACTAGATTTCGCAAGAATTGACGGGTACGATCATA
455 GCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATA
* *
23467 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGAGTGCTTTGGCGAGAGTAGTAC
520 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
**
23532 TAGGTTCGATTGACCTCCTGG
585 TAGGTT-GGGTGACCTCCTGG
* *
23553 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATATTTTTTTAGTTGCGTTTTCTCT
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
* *
23618 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTACGAAATAAATAAATTGAAACGATATTTGGTCG
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
** * *
23683 AATTTGCATTCAAATTCGAGGTACAAGTGCGATAAGAGGCAGCCTTTATATGTATACATTGC-CA
131 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCA
* * * ** *
23747 AGTGTTGACGGGTGCGATAATACCAGCACTAATGCCCCGGATCCCATTTGAACTCCGCAGCTAAG
196 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
* * *
23812 CGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTAGGAAGTCCTCGTGTTGCACCCCTC
261 CGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC
* *
23877 CTATTTTATTTCATATAATGTTTATTTTAGTTGTGTTTTCTCCACGTGGTGTAACTCATTCGTTA
326 CCATTTTATTTCATATAATGTTT-TTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTA
* * * * *
23942 TTTGCGTTTTGCTAAACAAATAATTTGAAACGATATTTGGTCGAATTTGCAATCAAATTTGAAGC
390 TTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAGGC
* * * *
24007 GCAAGTGCGATAAGAGGCAGCCTTTCTACGAATAGATTGCACAAGAGTTGATGGGTGCGATCATA
455 GCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATA
* *
24072 GCAGCACTAATGCACCGGATCCCCTCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
520 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
*
24137 TAGGTTGGGTGGCCTCCTGG
585 TAGGTTGGGTGACCTCCTGG
* * * * *
24157 GAAGTCCTCGTGTCGCAACCCTCACATTTTATTTCATATAATGCTTTTTTAGTTGTGTTTTCTCC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
*
24222 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCTAAATAAATAATTTGAAACGATATTTGGTCG
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
* * * * *
24287 AATTTGCAATCAAATTTGAGGCGCAAGTGCGATAAGAGGCAGCCTTTCTACGAATAGATTGCACA
131 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCA
* *
24352 AGAGTTGACGGGTGCGATCATAGCAGCACTAATGCACCGGATCCCCTCAGAACTCCGCAGTTAAG
196 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
* * * * **
24417 CGTGCTTAGGCGNTAATGCACCGGATCCCA-TCAAAACTCCGCAGGTAAGCGTG-CTTGGGCGAG
261 CGTGCTTGGGCG---A-G-A---G-T---AGT----ACT----AGGT-TGGGTGACCT---CCTG
*
24480 AGTAGTACTAGGTTGGGTGGCCTCCTGGGAAGTCCTCGTGTCGCACCCCTCCCATTTTATTTAAT
302 -G--G-A--A------GT--CCT-C------G---T-GT-T-GCACCCCTCCCATTTTATTTCAT
* *
24545 ATAATGTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTACGTTTTGTGAA
340 ATAATGTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAA
** * * * *
24610 ATAAATAATTTGAAACGATATTTTTTTGAATTTGCATCCAAATTCTAGACGCAAGTGCGATAAGA
405 ATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGA
* * *
24675 GCCAGCCTTTATATGAATAGATTGTGCAAGAGTTGACGGGTGCGATCATAGCAGCACTAATGCAC
470 GGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCAC
* *
24740 CGGATCTCATCAGAACTCCTCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCT
535 CGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCT
24805 CCTGG
600 CCTGG
* * * * *
24810 GAAGTCCTCATGTCGCATCCCTCCCATTTTATTTAATATAATGTTTTTTTAGTTGCATTTTCTCC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
* * *
24875 AAGTGGTGTAACTCATTCGTTATTTACGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCA
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
* * *
24940 AATTTGCATCCAAATT-GTA-GCGCAAGTGGGATAAGAGGCAGCCTTTATATGAATAGATTGCAC
131 AATTTGCATTCAAATTCG-AGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGC
* * ** *
25003 AAGAGTTGACGGGTGCGATCATATCAGCA-TCAATGCACCAGATCCCAGGAGAACTCCGCAGCTA
195 AAGAGTTGACGGGTGCGATCATACCAGCACT-AATGCACCGGATCCCATCAGAACTCCGCAGTTA
* * * *
25067 AGCCTGCCTAGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCC
259 AGCGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCC
* * *
25132 TCCCATTTTATTTCATATAATGTTTTTTTTAATTGTGTTTTCTCCACGTGGTGTAACGCATTCGT
324 TCCCATTTTATTTCATATAATG-TTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGT
* * * *
25197 TATTTGTGTTTTGTGAAATAAATAATTTTG-AACGATATTTGGTCGAATTTGTATTCAAAATCGA
388 TATTTGCGTTTTGCGAAATAAATAA-TTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGA
* * *
25261 GGCGCAAGTGCGAGAAGA-GCAATCATTTATATGAATAGATTGCAG-AAGAGTTGACGGGTGCGA
452 GGCGCAAGTGCGATAAGAGGC-AGCCTTTATATGAATAGATTGC-GCAAGAGTTGACGGGTGCGA
* * * ** **
25324 TCATACCAGCACCATTGCACCAGATCCCAGGAGAACTCCGCAGTTAAGCGTGCTTATGCGAGAGT
515 TCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGT
* *
25389 AGTACTAGGATGCGTGACCTCCTGG
580 AGTACTAGGTTGGGTGACCTCCTGG
* * * * *
25414 GAAGTCCTCGTGTTGCACCACTCCCATTTTATCTAATATAATGTTTTTTTAGTTGAGTTTTTTCC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
* * * * *
25479 ACATGGTGTAACTCATTCGTTATTTACGTTTTACGAAATTAATAATTCGAAACGATATTTGGTCG
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
* * * * * *
25544 AATTTGAATCCAAATTCTAGGCGCAAGTGCGATAAGAGCCAGCCTTTATATGACTAGATTTCGCA
131 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCA
25609 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
196 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
* * *
25674 CGTGCTTGGGCGAGAGTAGTACTAGGTTCGGTTGACCTCCTAGGAAGTCCTCGTGTTGCACCTCT
261 CGTGCTTGGGCGAGAGTAGTACTAGGTT-GGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCT
**
25739 CCCATTTTATTTCATATAAT-TTTTTTTAGTTGTATTTTCTCCACGTGGTGTAACTCATTCGTTA
325 CCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTA
* *
25803 CTTGCGTTTTGAGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAGGC
390 TTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAGGC
* * * *
25868 GCAAGTACGATAAGAGACAGCCTTTATATGTATAGATTGCGCAAGAGTTGACGGGTACGATCATA
455 GCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATA
* * **
25933 GCAGCACTAATGCACCGGAACCCATCAGAACTTTGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
520 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
25998 TAGGTTGGGTGACCTCCTGG
585 TAGGTTGGGTGACCTCCTGG
*
26018 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGTGTTTTCTCC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
* * *
26083 ACATGGTGTAACTCATTCGTTATTTGCGTTTTGCAAAATAAATAATTTGAAATGATATTTGGTCG
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
* ** *
26148 AATTTGCATTCAAATTCGAGGTGCAAGTGCGATAAGAGGCAGCAGTTATATCAATAGATTGCGCA
131 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCA
* *
26213 AGAGTTGACGGGTACGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCACAGTTAAG
196 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
* ** * * * *
26278 CGTGCTTGGGCCAGAGTAGTACTAGCATAGGTGACCTCCTGGGAGGTTCTCGTGTTGCACACCTC
261 CGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC
26343 CCATTTTATTTCATATAATGTTTTTTTTAGTT-CTGTTTTCTCCACGTGGTGTAACTCATTCGTT
326 CCATTTTATTTCATATAATG-TTTTTTTAGTTGC-GTTTTCTCCACGTGGTGTAACTCATTCGTT
* * * * *
26407 ATTTGCGTTCTGTGAAATAAATAATTTGGAACGATATTTGGTCGGATTTGTATTCAAATTCGAGG
389 ATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAGG
* *
26472 CGCATGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCAT
454 CGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCAT
* **
26537 ACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCAAGCGTGCTTGGATGAGAGTAGTA
519 ACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTA
*
26602 CTAGGATGGGTGACCTCCTGG
584 CTAGGTTGGGTGACCTCCTGG
* *
26623 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCGTATATTGTTTTTTTTAGTTGCGTTTTCTC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATG-TTTTTTTAGTTGCGTTTTCTC
* * * *
26688 CATGTGGTGTAACTCATTCGTTATTTGCGTTTTGGGAAATAAATAATTTGGAACGTTATTTGGTC
65 CACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTC
* * * * *
26753 GGATTTGTATTCAAATTCGAGGCGCATGTGCGATAAG-GCGCAGCCTTCATATGACTAGATTGCG
130 GAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAG-GCAGCCTTTATATGAATAGATTGCG
*
26817 CAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGAT-CCATTCAGAACTCCGCAGTC
194 CAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCA-TCAGAACTCCGCAGTT
* * * *
26881 AAGCCTGCTTGGGCGAGACTAGTACTAAGTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCATCC
258 AAGCGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCC
* * *
26946 CTCCCATTTTATTTCGTATAATGCTTTTTTTAGTTGCGTATTCTCCACGTGGTGTAACGCATTCG
323 CTCCCATTTTATTTCATATAATG-TTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCG
* * * * *
27011 TTATTTGTGTATTAT-TGAAATAAATAATTTGGAACAATATTTGGTCGAATTTGTATTCAAATTC
387 TTATTTGCGT-TT-TGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTC
* ** * * * * *
27075 GAGGCACAAGTGCGGGAAGA-GCAATCCTTTATATGTATAGATTGCACAACAGTTGACGAGTGCG
450 GAGGCGCAAGTGCGATAAGAGGC-AGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCG
* * ** *
27139 ATCATACCAGCACCAATGCACCAGATCCCAGGAGAACTCCGCAGTTAAGCGTGCTTAGGCGAGAG
514 ATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAG
* *
27204 TAGTACTAGGATGGGTGACCTTCTGG
579 TAGTACTAGGTTGGGTGACCTCCTGG
* * *
27230 GAAGTCCTCGTCTTGCACCCTTCCCATTTTGTTTTCATATAATGTTTTTTTTAGTTGCGTTTTCT
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTT-ATTTCATATAATG-TTTTTTTAGTTGCGTTTTCT
* * *
27295 CCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGTGAAATAAATATTTTGGAAC-A-A-----T
64 CCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGT
*
27353 ---ATTTG---GC-----C---G-GCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCG
129 CGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCG
*
27403 CAAGAGTTGATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTA
194 CAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTA
* *
27468 AGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCCGGGAAGTCCTCGTGTTGCACCCC
259 AGCGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCC
* * *
27533 ACCCATTTTATTTCATATAATGTTTTTTTTTAGTTGCGTTTTCTCCACCTGGTGTATCTCATTCG
324 TCCCATTTTATTTCATATAATG--TTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCG
* * * * * **
27598 TTATTTGCGTTTTGTGAAATAAATATTTTGGAACAATATTTGGCCGAATTTGTGTTCAAATTCGA
387 TTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGA
*
27663 GGCGCAAGTGCGATAATG-GGCAGCCTTTATATGAATAGATTGCGAAAGAGTTGACGGGTGCGAT
452 GGCGCAAGTGCGATAA-GAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGAT
* * * * * * *
27727 CATACAAACACTAATGCACCGGATCGCATCAGAAATCCGCAGTTAAGCATGCTTAGGCGAGGGTA
516 CATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTA
*
27792 GTACTAGGATGGGTGACCTCCTGG
581 GTACTAGGTTGGGTGACCTCCTGG
* * *
27816 GAAGTCCTCCTGTTGCTCCCCTCCCATTTTATTTCATAAAATG-TTTTTT-GTTGCGTTTTCTCC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
* * * * * * *
27879 ACGTCGTGTACCGCATTCGTTATTTCCATTTTGTGAAATAAATAATTTGGAACGATATTTGGTCG
66 ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
* * *
27944 AATTTGTATTAAAATTCAAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCA
131 AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCA
* * * *
28009 AGAGTTGACGAGTGTGATCATACCAGCACTAATGCACCGGATCCCATTAGATCTCCGCAGTTAAG
196 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
* *
28074 CGTGCTTGGG-G-GGGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC
261 CGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC
* *
28137 CCATTTTATTTCATATAATGTTTTTTGTAGTTGCGTTTTCTCCACGTGGTATAACTCATTCATTA
326 CCATTTTATTTCATATAATGTTTTTT-TAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTA
* * * * * *
28202 TTGGTGTTTTGTGAAATAAATAATTTGGAACGATATTTGGTCGAATTTGCATTTAAATTCGCGGC
390 TTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAGGC
*
28267 GCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTACGCAAGAGTTGACGGGTGCGATCATA
455 GCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATA
28332 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
520 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
*
28397 TAGGATGGGTGACCTCCTGG
585 TAGGTTGGGTGACCTCCTGG
28417 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTTAGTTGCGTTTTCTC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATG-TTTTTTTAGTTGCGTTTTCTC
* *
28482 CACGTGGTGTAACTCATTCGTTATTTGCGTTTTGTGAAATAAATAATTTGGAACGATATTTGGTC
65 CACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTC
* *
28547 GAATTTGCATTTAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGC
130 GAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGC
* * * *
28612 AAGAGTTGACGGGTGCGATCATACTAGGACTAATACACCGGATCCCATCAGAACTCCGCAGTTGA
195 AAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAA
* * *
28677 GCGTGCTTGGGCGAGAGTAGTACTAGGATGGCTGACCTCCTGAGAAGTCCTCGTGTTGCACCCCT
260 GCGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCT
**
28742 CCCATTTTATTTCATATAATGTTTTTTTTAGTTGTATTTTCTCCACGTGGTGTAACTCATTCGTT
325 CCCATTTTATTTCATATAATG-TTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTT
* * *
28807 ATTTGCGTTTTGGGAAATAAATAATTTTG-AATGATATTTGGTCGAATTTGCATTTAAATTCGAG
389 ATTTGCGTTTTGCGAAATAAATAA-TTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAG
* *
28871 GCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCG
453 GCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
* * *
28936 TACCAGCACTAATGCACCGGATCCCCTTAGAACTCCGCAGTTAAGCGTTCTTGGGCGAGAGTAGT
518 TACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGT
* *
29001 ACTAGGATGGGTGACCTCGTGG
583 ACTAGGTTGGGTGACCTCCTGG
*
29023 GAAGTCCTCGTGTTGCACCCCTCCCGTTTTATTTCATATAATGTTTTTTTTAGTTGCGTTTTCTC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATG-TTTTTTTAGTTGCGTTTTCTC
*
29088 CACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGGAACGATATTTGGTC
65 CACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTC
* *
29153 GAATTTGTATTTAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGC
130 GAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGC
* * * **
29218 AAGAGTTGACGGGTGCGATCATAGCAGCACCAATGCACCAGATCCCAAGAGAACTCCGCAGTTAA
195 AAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAA
* * * * * *
29283 GCGTGCTTAGGTGAGAGGAGTACTAGGATGGGTGACCTTCTGGGAAGTCCTCGTCTTGCACCCCT
260 GCGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCT
*
29348 CCCATTTTGTTTTCATATAATGTTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGT
325 CCCATTTT-ATTTCATATAATG-TTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGT
* * * *
29413 TATTTGCGTTTTGTGAAATAAATAATTTGAAACGATATTTGGTTGAATTTGCATTTAAATCCGAG
388 TATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAG
* *
29478 GCGCAAGTGCGATAAGTGGCAGCTTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
453 GCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
*
29543 TACCAGCACTAATGCACCGGATCCCATCAGAACTCTGCAGTTAA------------G-GAG-A--
518 TACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGT
*
29592 ACTAGGATGGGTGACCTCCTGG
583 ACTAGGTTGGGTGACCTCCTGG
* *
29614 GAAGTCCTCGTGTTGCACCCCTCCCATCTTATTTCATATAATATTTTTTTTAGTTGCGTTTTCTC
1 GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAAT-GTTTTTTTAGTTGCGTTTTCTC
* * * * *
29679 CACGTGGTGTAACTCATTCGTTTTTTTCGTTTTGTGAAATAAATATTTTGGAACGATATTTGGTC
65 CACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTC
* * *
29744 GAAATTGGATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGACTAGATTGCGC
130 GAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGC
* * * ** * *
29809 AAGAGTTGACGGGTGCGATCATAGCAGCACCAATGCACCAGATCCCAAGAGAACTCTGTAGTTAA
195 AAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAA
* * * *
29874 GCGTGCTT-AGCTGAGAGGAGTACTAGGATAGGTGACCT
260 GCGTGCTTGGGC-GAGAGTAGTACTAGGTTGGGTGACCT
29912 TCGGATAAGA
Statistics
Matches: 11398, Mismatches: 1726, Indels: 1266
0.79 0.12 0.09
Matches are distributed among these distances:
582 70 0.01
583 14 0.00
584 2 0.00
585 16 0.00
586 379 0.03
587 58 0.01
588 18 0.00
589 15 0.00
590 8 0.00
591 318 0.03
592 32 0.00
593 30 0.00
594 33 0.00
595 21 0.00
596 17 0.00
597 25 0.00
598 32 0.00
599 30 0.00
600 19 0.00
601 281 0.02
602 619 0.05
603 828 0.07
604 3745 0.33
605 950 0.08
606 1229 0.11
607 457 0.04
608 99 0.01
609 127 0.01
610 8 0.00
611 8 0.00
612 7 0.00
613 6 0.00
614 2 0.00
615 3 0.00
616 9 0.00
617 5 0.00
618 10 0.00
619 5 0.00
620 6 0.00
621 11 0.00
622 15 0.00
623 9 0.00
624 11 0.00
625 24 0.00
626 19 0.00
627 12 0.00
628 9 0.00
629 5 0.00
630 9 0.00
631 17 0.00
632 8 0.00
633 12 0.00
634 1 0.00
635 1 0.00
636 10 0.00
637 200 0.02
638 6 0.00
639 20 0.00
640 342 0.03
641 8 0.00
642 7 0.00
643 15 0.00
644 29 0.00
645 25 0.00
646 11 0.00
647 5 0.00
648 4 0.00
649 9 0.00
650 4 0.00
651 16 0.00
652 119 0.01
653 377 0.03
654 41 0.00
655 14 0.00
656 10 0.00
657 28 0.00
658 18 0.00
659 12 0.00
660 121 0.01
661 23 0.00
662 24 0.00
663 25 0.00
664 14 0.00
665 14 0.00
666 18 0.00
667 24 0.00
668 12 0.00
669 21 0.00
670 5 0.00
671 7 0.00
672 14 0.00
673 1 0.00
674 3 0.00
675 4 0.00
676 1 0.00
677 3 0.00
678 3 0.00
679 6 0.00
680 10 0.00
681 1 0.00
683 2 0.00
685 8 0.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (604 bp):
GAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCC
ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
AATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCA
AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
CGTGCTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC
CCATTTTATTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTAT
TTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCG
CAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATAC
CAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACT
AGGTTGGGTGACCTCCTGG
Found at i:19853 original size:212 final size:212
Alignment explanation
Indices: 19486--19909 Score: 812
Period size: 212 Copynumber: 2.0 Consensus size: 212
19476 GCGTACTTGG
19486 GCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGCGTCGCACCCCTCCCATTTTAT
1 GCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGCGTCGCACCCCTCCCATTTTAT
*
19551 TTAATATAATGTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTT
66 TTAATATAATGTTTTTTTAGTTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTTT
* *
19616 GCAAAATAAATAATATGAAACGATACTTGGTCGAATTTGCATTCAAATTCGGGGCGCAAGTGCGA
131 GCAAAATAAATAATATGAAACGATACTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCAA
19681 TAAGAGGCAGCCTTTAT
196 TAAGAGGCAGCCTTTAT
19698 GCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGCGTCGCACCCCTCCCATTTTAT
1 GCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGCGTCGCACCCCTCCCATTTTAT
*
19763 TTAATATAATGTTTTTTTAGTTGTGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTTT
66 TTAATATAATGTTTTTTTAGTTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTTT
19828 GCAAAATAAATAATATGAAACGATACTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCAA
131 GCAAAATAAATAATATGAAACGATACTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCAA
19893 TAAGAGGCAGCCTTTAT
196 TAAGAGGCAGCCTTTAT
19910 ATTAATAGAT
Statistics
Matches: 208, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
212 208 1.00
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (212 bp):
GCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGCGTCGCACCCCTCCCATTTTAT
TTAATATAATGTTTTTTTAGTTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTTT
GCAAAATAAATAATATGAAACGATACTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCAA
TAAGAGGCAGCCTTTAT
Found at i:20244 original size:302 final size:302
Alignment explanation
Indices: 19698--20455 Score: 1282
Period size: 302 Copynumber: 2.5 Consensus size: 302
19688 CAGCCTTTAT
* *
19698 GCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGCGTCGCACCCCTCCCATTTTAT
1 GCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTAT
*
19763 TTAATATAATGTTTTTTTAGTTGTGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTTT
66 TTCATATAATGTTTTTTTAGTTGTGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTTT
*
19828 GCAAAATAAATAATATGAAACGATACTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCAA
131 GCAAAATAAATAATTTGAAACGATACTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCAA
* *
19893 TAAGAGGCAGCCTTTATATTAATAGATTGCGCAAGAGTTTACGGGTACGATCATAGCAGCACTAA
196 TAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTACGATCATAGCAGCACTAA
*
19958 TGCACTGGATCCCATCAGAACTTCACAGTTAAGCGTGCTTGG
261 TGCACCGGATCCCATCAGAACTTCACAGTTAAGCGTGCTTGG
* * *
20000 GCGAGAGTAGTACTAGGTTGGGTGACCTTCTGGGAAGTCCTGGTGTTGCACCCCTCACATTTTAT
1 GCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTAT
* * * *
20065 TTCATATAAAGCTTTTTTAGTTGTGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGTGTTTT
66 TTCATATAATGTTTTTTTAGTTGTGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTTT
* * * *
20130 GCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCCAATTCGAGGCGCAAGTGCGA
131 GCAAAATAAATAATTTGAAACGATACTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCAA
20195 TAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTACGATCATAGCAGCACTAA
196 TAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTACGATCATAGCAGCACTAA
* *
20260 TGCACCGGATCCCCTCAGAACTTCGCAGTTAAGCGTGCTTGG
261 TGCACCGGATCCCATCAGAACTTCACAGTTAAGCGTGCTTGG
* * * *
20302 GCGAGAGCAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGCTGCACCCCCCCCATTCTAT
1 GCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTAT
*
20367 TTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTTT
66 TTCATATAATGTTTTTTTAGTTGTGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTTT
*
20432 ACAAAATAAATAATTTGAAACGAT
131 GCAAAATAAATAATTTGAAACGAT
20456 CGGGTACGAT
Statistics
Matches: 422, Mismatches: 34, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
302 422 1.00
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (302 bp):
GCGAGAGTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTAT
TTCATATAATGTTTTTTTAGTTGTGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTTT
GCAAAATAAATAATTTGAAACGATACTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCAA
TAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTACGATCATAGCAGCACTAA
TGCACCGGATCCCATCAGAACTTCACAGTTAAGCGTGCTTGG
Found at i:20618 original size:220 final size:220
Alignment explanation
Indices: 20236--21555 Score: 2640
Period size: 220 Copynumber: 6.0 Consensus size: 220
20226 CAAGAGTTGA
20236 CGGGTACGATCATAGCAGCACTAATGCACCGGATCCCCTCAGAACTTCGCAGTTAAGCGTGCTTG
1 CGGGTACGATCATAGCAGCACTAATGCACCGGATCCCCTCAGAACTTCGCAGTTAAGCGTGCTTG
20301 GGCGAGAGCAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGCTGCACCCCCCCCATTCTA
66 GGCGAGAGCAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGCTGCACCCCCCCCATTCTA
20366 TTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTT
131 TTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTT
20431 TACAAAATAAATAATTTGAAACGAT
196 TACAAAATAAATAATTTGAAACGAT
20456 CGGGTACGATCATAGCAGCACTAATGCACCGGATCCCCTCAGAACTTCGCAGTTAAGCGTGCTTG
1 CGGGTACGATCATAGCAGCACTAATGCACCGGATCCCCTCAGAACTTCGCAGTTAAGCGTGCTTG
20521 GGCGAGAGCAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGCTGCACCCCCCCCATTCTA
66 GGCGAGAGCAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGCTGCACCCCCCCCATTCTA
20586 TTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTT
131 TTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTT
20651 TACAAAATAAATAATTTGAAACGAT
196 TACAAAATAAATAATTTGAAACGAT
20676 CGGGTACGATCATAGCAGCACTAATGCACCGGATCCCCTCAGAACTTCGCAGTTAAGCGTGCTTG
1 CGGGTACGATCATAGCAGCACTAATGCACCGGATCCCCTCAGAACTTCGCAGTTAAGCGTGCTTG
20741 GGCGAGAGCAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGCTGCACCCCCCCCATTCTA
66 GGCGAGAGCAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGCTGCACCCCCCCCATTCTA
20806 TTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTT
131 TTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTT
20871 TACAAAATAAATAATTTGAAACGAT
196 TACAAAATAAATAATTTGAAACGAT
20896 CGGGTACGATCATAGCAGCACTAATGCACCGGATCCCCTCAGAACTTCGCAGTTAAGCGTGCTTG
1 CGGGTACGATCATAGCAGCACTAATGCACCGGATCCCCTCAGAACTTCGCAGTTAAGCGTGCTTG
20961 GGCGAGAGCAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGCTGCACCCCCCCCATTCTA
66 GGCGAGAGCAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGCTGCACCCCCCCCATTCTA
21026 TTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTT
131 TTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTT
21091 TACAAAATAAATAATTTGAAACGAT
196 TACAAAATAAATAATTTGAAACGAT
21116 CGGGTACGATCATAGCAGCACTAATGCACCGGATCCCCTCAGAACTTCGCAGTTAAGCGTGCTTG
1 CGGGTACGATCATAGCAGCACTAATGCACCGGATCCCCTCAGAACTTCGCAGTTAAGCGTGCTTG
21181 GGCGAGAGCAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGCTGCACCCCCCCCATTCTA
66 GGCGAGAGCAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGCTGCACCCCCCCCATTCTA
21246 TTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTT
131 TTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTT
21311 TACAAAATAAATAATTTGAAACGAT
196 TACAAAATAAATAATTTGAAACGAT
21336 CGGGTACGATCATAGCAGCACTAATGCACCGGATCCCCTCAGAACTTCGCAGTTAAGCGTGCTTG
1 CGGGTACGATCATAGCAGCACTAATGCACCGGATCCCCTCAGAACTTCGCAGTTAAGCGTGCTTG
21401 GGCGAGAGCAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGCTGCACCCCCCCCATTCTA
66 GGCGAGAGCAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGCTGCACCCCCCCCATTCTA
21466 TTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTT
131 TTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTT
21531 TACAAAATAAATAATTTGAAACGAT
196 TACAAAATAAATAATTTGAAACGAT
21556 ATTTGGTCGA
Statistics
Matches: 1100, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
220 1100 1.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (220 bp):
CGGGTACGATCATAGCAGCACTAATGCACCGGATCCCCTCAGAACTTCGCAGTTAAGCGTGCTTG
GGCGAGAGCAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGCTGCACCCCCCCCATTCTA
TTTCATATAATGTTTTTTTAGTTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTT
TACAAAATAAATAATTTGAAACGAT
Found at i:21695 original size:154 final size:154
Alignment explanation
Indices: 21415--21877 Score: 917
Period size: 154 Copynumber: 3.0 Consensus size: 154
21405 AGAGCAGTAC
*
21415 TAGGTTGGGTGACCTCCTGGGAAGTCCTCGTGCTGCACCCCCCCCATTCTATTTCATATAATGTT
1 TAGGTTAGGTGACCTCCTGGGAAGTCCTCGTGCTGCACCCCCCCCATTCTATTTCATATAATGTT
21480 TTTTTAGTTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTTTACAAAATAAATAA
66 TTTTTAGTTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTTTACAAAATAAATAA
21545 TTTGAAACGATATTTGGTCGAATT
131 TTTGAAACGATATTTGGTCGAATT
21569 TAGGTTAGGTGACCTCCTGGGAAGTCCTCGTGCTGCACCCCCCCCATTCTATTTCATATAATGTT
1 TAGGTTAGGTGACCTCCTGGGAAGTCCTCGTGCTGCACCCCCCCCATTCTATTTCATATAATGTT
21634 TTTTTAGTTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTTTACAAAATAAATAA
66 TTTTTAGTTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTTTACAAAATAAATAA
21699 TTTGAAACGATATTTGGTCGAATT
131 TTTGAAACGATATTTGGTCGAATT
21723 TAGGTTAGGTGACCTCCTGGGAAGTCCTCGTGCTGCACCCCCCCCATTCTATTTCATATAATGTT
1 TAGGTTAGGTGACCTCCTGGGAAGTCCTCGTGCTGCACCCCCCCCATTCTATTTCATATAATGTT
21788 TTTTTAGTTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTTTACAAAATAAATAA
66 TTTTTAGTTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTTTACAAAATAAATAA
21853 TTTGAAACGATATTTGGTCGAATT
131 TTTGAAACGATATTTGGTCGAATT
21877 T
1 T
21878 GCATTCAAAT
Statistics
Matches: 308, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
154 308 1.00
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (154 bp):
TAGGTTAGGTGACCTCCTGGGAAGTCCTCGTGCTGCACCCCCCCCATTCTATTTCATATAATGTT
TTTTTAGTTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTTTACAAAATAAATAA
TTTGAAACGATATTTGGTCGAATT
Found at i:23686 original size:303 final size:302
Alignment explanation
Indices: 21730--29911 Score: 11328
Period size: 303 Copynumber: 27.0 Consensus size: 302
21720 ATTTAGGTTA
* * *
21730 GGTGACCTCCTGGGAAGTCCTCGTGCTGCACCCCCCCCATTCTATTTCATATAATGTTTTTTTAG
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAG
* * *
21795 TTGCGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTTTACAAAATAAATAATTTGAAA
66 TTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAA
* * * *
21860 CGATATTTGGTCGAATTTGCATTCAAATTCGACGCGCAGGTGCGGTAAGAGGCAGCCTTTAGATG
131 CGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATG
* *
21925 AATAGATTGCGCAAGAGTTGACGGGTACGATCATAGCAGCACTAATGCACCGGATCCCATCAGAA
196 AATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAA
* *
21990 CTTCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGTTG
261 CTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
* * * * *
22032 GGTGACCTTCT-GGATGTCCTGGTGTTGCACCCCTCACATTTTATTTCATATAATGCTTTTTTAG
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAG
* * *
22096 TTGTGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGAGTTTTACGAAATAAATAATTTGAAA
66 TTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAA
*
22161 CGATATTTGGTCGAATTTGCATTCCAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATG
131 CGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATG
* * * *
22226 AATAGATTGCGCAAGAGTTGACGGGTACGATCATAGCAGCACTAATGCACCGAATCCCCTCAGAA
196 AATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAA
* * * *
22291 GTTCGCAGTTAAGCGTGCTTGGGCGAGAGCAGTACTAGGTTG
261 CTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
*
22333 GTTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAG
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAG
* * *
22398 TTGCGTTTTCTCTACGTGGTGTAACTCATTCGTTATTTGCGTTTTACGAAATAAATAAATTGAAA
66 TTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAA
22463 CGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATG
131 CGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATG
* * * * **
22528 TATAGATTGC-CAAGTGTTGACGGGTGCGATAATACCAGCACTAATGCCCCGGATCCCATTTGAA
196 AATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAA
* *
22592 CTCCGCAGCTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATG
261 CTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
* * * * * *
22634 GGTGACCTCCTAGGAAGTCCTCATGTTGCACCCCTCCTATTTCATTTCATATAATG-CTTTTTAT
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAG
* * *
22698 TTGTGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGAC-TTTTGTGAAATAAATAATTTGAA
66 TTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTG-CGTTTTGCGAAATAAATAATTTGAA
*
22762 ACGATATTTGTTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATAT
130 ACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATAT
* * *
22827 GAATAGATTGTGCAAGAGTTGACGGGTACGATCATAGCAGCACTAATGCACCGGATCCCATCAGA
195 GAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGA
* * * *
22892 AATTCGCAGTTAAACGTGCTTGGGCGAGAGTAGTACTAGGTTG
260 ACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
* * *
22935 GGTGACCTCCTGGGAAGTTCTCGTGTCGCACCCCTCCCATTTTATTTAATATAATGTTTTTTTAG
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAG
* * * *
23000 TTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTACATTTTTCGAAATTAATAATTTGAAA
66 TTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAA
*
23065 CGATATTTGTTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATG
131 CGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATG
* * *
23130 AATAGATTGTGCAAGAGTTGACGGGTACGATCATAGCAGCACTAATGCACCGGATCCCATCAGAA
196 AATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAA
* * * *
23195 ATTCGCAGTTAAACGTGCTTGGGCGAGAGTAGTACTAGGTTG
261 CTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
* * *
23237 GGTGACCTCCTGGGAAGTTCTCGTGTCGCACCCCTCCCATTTTATTTAATATAATGTTTTTTTAG
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAG
* * * *
23302 TTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTACATTTTTCGAAATTAATAATTTGAAA
66 TTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAA
* * *
23367 CGATATTTGGTCGAATTTGCA-TCTAAATTCTAGGCGCAAGTGCGATAAAAGCCAGCCTTTATAT
131 CGATATTTGGTCGAATTTGCATTC-AAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATAT
* * * *
23431 GACTAGATTTCGCAAGAATTGACGGGTACGATCATACCAGCACTAATGCACCGGATCCCATCAGA
195 GAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGA
* * *
23496 ACTCCGCAGTTAAGAGTGCTTTGGCGAGAGTAGTACTAGGTTCG
260 ACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGAT-G
** *
23540 ATTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATATTTTTTTAG
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAG
* * *
23605 TTGCGTTTTCTCTACGTGGTGTAACTCATTCGTTATTTGCGTTTTACGAAATAAATAAATTGAAA
66 TTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAA
**
23670 CGATATTTGGTCGAATTTGCATTCAAATTCGAGGTACAAGTGCGATAAGAGGCAGCCTTTATATG
131 CGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATG
* * * * * **
23735 TATACATTGC-CAAGTGTTGACGGGTGCGATAATACCAGCACTAATGCCCCGGATCCCATTTGAA
196 AATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAA
* *
23799 CTCCGCAGCTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATG
261 CTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
* *
23841 GGTGACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCCTATTTTATTTCATATAATGTTTATTTTA
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTT-TTTTA
* * *
23906 GTTGTGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCTAAACAAATAATTTGAA
65 GTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAA
* * * * *
23971 ACGATATTTGGTCGAATTTGCAATCAAATTTGAAGCGCAAGTGCGATAAGAGGCAGCCTTTCTAC
130 ACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATAT
* * * *
24036 GAATAGATTGCACAAGAGTTGATGGGTGCGATCATAGCAGCACTAATGCACCGGATCCCCTCAGA
195 GAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGA
*
24101 ACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGTTG
260 ACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
* * * * *
24144 GGTGGCCTCCTGGGAAGTCCTCGTGTCGCAACCCTCACATTTTATTTCATATAATGCTTTTTTAG
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAG
* *
24209 TTGTGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCTAAATAAATAATTTGAAA
66 TTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAA
* * * *
24274 CGATATTTGGTCGAATTTGCAATCAAATTTGAGGCGCAAGTGCGATAAGAGGCAGCCTTTCTACG
131 CGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATG
* * *
24339 AATAGATTGCACAAGAGTTGACGGGTGCGATCATAGCAGCACTAATGCACCGGATCCCCTCAGAA
196 AATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAA
* * * **
24404 CTCCGCAGTTAAGCGTGCTTAGGCGNTA-ATGCACCGGATCCCATCAAAACTCCG
261 CTCCGCAGTTAAGCGTGCTTGGGCG--AGA-GTA---G-T-AC-T-AGGA-T--G
* * * ** *
24458 CAGGTAAGCGTGCTTGGGCGAGAGTAGTAC-TAGGTTGGGTGGCCTCCTGGGAAGTCCTCGTGTC
1 --GGTGA-CCT-CCT-GG-GA-AGTCCT-CGT--GTT-----G-CACC--------CCTC----C
*** * * * * * *
24522 GCACCCCTCCCATTTTATTTAATATAATGTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTC
38 -CA----TTTTATTTCATATAATGT-TTTTTTA----GTTGCGTTTTCTCCACGTGGTGTAACTC
* * ** * *
24587 ATTCGTTATTTACGTTTTGTGAAATAAATAATTTGAAACGATATTTTTTTGAATTTGCATCCAAA
93 ATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAA
* * * *
24652 TTCTAGACGCAAGTGCGATAAGAGCCAGCCTTTATATGAATAGATTGTGCAAGAGTTGACGGGTG
158 TTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTG
* * *
24717 CGATCATAGCAGCACTAATGCACCGGATCTCATCAGAACTCCTCAGTTAAGCGTGCTTGGGCGAG
223 CGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAG
*
24782 AGTAGTACTAGGTTG
288 AGTAGTACTAGGATG
* * * *
24797 GGTGACCTCCTGGGAAGTCCTCATGTCGCATCCCTCCCATTTTATTTAATATAATGTTTTTTTAG
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAG
* * *
24862 TTGCATTTTCTCCAAGTGGTGTAACTCATTCGTTATTTACGTTTTGCGAAATAAATAATTTGAAA
66 TTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAA
* * *
24927 CGATATTTGGTCAAATTTGCATCCAAATT-GTA-GCGCAAGTGGGATAAGAGGCAGCCTTTATAT
131 CGATATTTGGTCGAATTTGCATTCAAATTCG-AGGCGCAAGTGCGATAAGAGGCAGCCTTTATAT
* * * **
24990 GAATAGATTGCACAAGAGTTGACGGGTGCGATCATATCAGCA-TCAATGCACCAGATCCCAGGAG
195 GAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACT-AATGCACCGGATCCCATCAG
* * * *
25054 AACTCCGCAGCTAAGCCTGCCTAGGCGAGAGTAGTACTAGGATG
259 AACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
25098 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTTA
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATG-TTTTTTTA
* * * * *
25163 ATTGTGTTTTCTCCACGTGGTGTAACGCATTCGTTATTTGTGTTTTGTGAAATAAATAATTTTG-
65 GTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAA-TTTGA
* * * * *
25227 AACGATATTTGGTCGAATTTGTATTCAAAATCGAGGCGCAAGTGCGAGAAGA-GCAATCATTTAT
129 AACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGC-AGCCTTTAT
* * * **
25291 ATGAATAGATTGCAG-AAGAGTTGACGGGTGCGATCATACCAGCACCATTGCACCAGATCCCAGG
193 ATGAATAGATTGC-GCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATC
**
25355 AGAACTCCGCAGTTAAGCGTGCTTATGCGAGAGTAGTACTAGGATG
257 AGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
* * * *
25401 CGTGACCTCCTGGGAAGTCCTCGTGTTGCACCACTCCCATTTTATCTAATATAATGTTTTTTTAG
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAG
* * * * * * *
25466 TTGAGTTTTTTCCACATGGTGTAACTCATTCGTTATTTACGTTTTACGAAATTAATAATTCGAAA
66 TTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAA
* * * *
25531 CGATATTTGGTCGAATTTGAATCCAAATTCTAGGCGCAAGTGCGATAAGAGCCAGCCTTTATATG
131 CGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATG
* *
25596 ACTAGATTTCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAA
196 AATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAA
*
25661 CTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGTTCG
261 CTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGAT-G
* * *
25704 GTTGACCTCCTAGGAAGTCCTCGTGTTGCACCTCTCCCATTTTATTTCATATAAT-TTTTTTTAG
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAG
** * *
25768 TTGTATTTTCTCCACGTGGTGTAACTCATTCGTTACTTGCGTTTTGAGAAATAAATAATTTGAAA
66 TTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAA
* *
25833 CGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTACGATAAGAGACAGCCTTTATATG
131 CGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATG
* * * *
25898 TATAGATTGCGCAAGAGTTGACGGGTACGATCATAGCAGCACTAATGCACCGGAACCCATCAGAA
196 AATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAA
** *
25963 CTTTGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGTTG
261 CTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
26005 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAG
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAG
* * *
26070 TTGTGTTTTCTCCACATGGTGTAACTCATTCGTTATTTGCGTTTTGCAAAATAAATAATTTGAAA
66 TTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAA
* * ** *
26135 TGATATTTGGTCGAATTTGCATTCAAATTCGAGGTGCAAGTGCGATAAGAGGCAGCAGTTATATC
131 CGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATG
*
26200 AATAGATTGCGCAAGAGTTGACGGGTACGATCATACCAGCACTAATGCACCGGATCCCATCAGAA
196 AATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAA
* * * *
26265 CTCCACAGTTAAGCGTGCTTGGGCCAGAGTAGTACTAGCATA
261 CTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
* * *
26307 GGTGACCTCCTGGGAGGTTCTCGTGTTGCACACCTCCCATTTTATTTCATATAATGTTTTTTTTA
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATG-TTTTTTTA
* * *
26372 GTT-CTGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTCTGTGAAATAAATAATTTGG
65 GTTGC-GTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGA
* * * *
26436 AACGATATTTGGTCGGATTTGTATTCAAATTCGAGGCGCATGTGCGATAAGGGGCAGCCTTTATA
129 AACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATA
26501 TGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAG
194 TGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAG
* **
26566 AACTCCGCAGTCAAGCGTGCTTGGATGAGAGTAGTACTAGGATG
259 AACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
* *
26610 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCGTATATTGTTTTTTTTA
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATG-TTTTTTTA
* * *
26675 GTTGCGTTTTCTCCATGTGGTGTAACTCATTCGTTATTTGCGTTTTGGGAAATAAATAATTTGGA
65 GTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAA
* * * * *
26740 ACGTTATTTGGTCGGATTTGTATTCAAATTCGAGGCGCATGTGCGATAAG-GCGCAGCCTTCATA
130 ACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAG-GCAGCCTTTATA
*
26804 TGACTAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGAT-CCATTCA
194 TGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCA-TCA
* * * * *
26868 GAACTCCGCAGTCAAGCCTGCTTGGGCGAGACTAGTACTAAGTTG
258 GAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
* *
26913 GGTGACCTCCTGGGAAGTCCTCGTGTTGCATCCCTCCCATTTTATTTCGTATAATGCTTTTTTTA
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATG-TTTTTTTA
* * * *
26978 GTTGCGTATTCTCCACGTGGTGTAACGCATTCGTTATTTGTGTATTAT-TGAAATAAATAATTTG
65 GTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGT-TT-TGCGAAATAAATAATTTG
* * * * ** *
27042 GAACAATATTTGGTCGAATTTGTATTCAAATTCGAGGCACAAGTGCGGGAAGA-GCAATCCTTTA
128 AAACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGC-AGCCTTTA
* * * * * * **
27106 TATGTATAGATTGCACAACAGTTGACGAGTGCGATCATACCAGCACCAATGCACCAGATCCCAGG
192 TATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATC
*
27171 AGAACTCCGCAGTTAAGCGTGCTTAGGCGAGAGTAGTACTAGGATG
257 AGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
* * * *
27217 GGTGACCTTCTGGGAAGTCCTCGTCTTGCACCCTTCCCATTTTGTTTTCATATAATGTTTTTTTT
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTT-ATTTCATATAATG-TTTTTTT
* * *
27282 AGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGTGAAATAAATATTTTGG
64 AGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGA
*
27347 AAC-A-A-----T---ATTTG---GC-----C---G-GCAAGTGCGATAAGAGGCAGCCTTTATA
129 AACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATA
*
27390 TGAATAGATTGCGCAAGAGTTGATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAG
194 TGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAG
27455 AACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
259 AACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
* *
27499 GGTGACCTCCCGGGAAGTCCTCGTGTTGCACCCCACCCATTTTATTTCATATAATGTTTTTTTTT
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATG--TTTTTTT
* * * * *
27564 AGTTGCGTTTTCTCCACCTGGTGTATCTCATTCGTTATTTGCGTTTTGTGAAATAAATATTTTGG
64 AGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGA
* * **
27629 AACAATATTTGGCCGAATTTGTGTTCAAATTCGAGGCGCAAGTGCGATAATG-GGCAGCCTTTAT
129 AACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAA-GAGGCAGCCTTTAT
* * * *
27693 ATGAATAGATTGCGAAAGAGTTGACGGGTGCGATCATACAAACACTAATGCACCGGATCGCATCA
193 ATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCA
* * * *
27758 GAAATCCGCAGTTAAGCATGCTTAGGCGAGGGTAGTACTAGGATG
258 GAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
* * *
27803 GGTGACCTCCTGGGAAGTCCTCCTGTTGCTCCCCTCCCATTTTATTTCATAAAATG-TTTTTT-G
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAG
* * * * * * *
27866 TTGCGTTTTCTCCACGTCGTGTACCGCATTCGTTATTTCCATTTTGTGAAATAAATAATTTGGAA
66 TTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAA
* * *
27931 CGATATTTGGTCGAATTTGTATTAAAATTCAAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATG
131 CGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATG
* * * *
27996 AATAGATTGCGCAAGAGTTGACGAGTGTGATCATACCAGCACTAATGCACCGGATCCCATTAGAT
196 AATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAA
*
28061 CTCCGCAGTTAAGCGTGCTTGGG-G-GGGTAGTACTAGGATG
261 CTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
28101 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTGTA
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTT-TA
* * * * * *
28166 GTTGCGTTTTCTCCACGTGGTATAACTCATTCATTATTGGTGTTTTGTGAAATAAATAATTTGGA
65 GTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAA
* *
28231 ACGATATTTGGTCGAATTTGCATTTAAATTCGCGGCGCAAGTGCGATAAGAGGCAGCCTTTATAT
130 ACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATAT
*
28296 GAATAGATTACGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGA
195 GAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGA
28361 ACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
260 ACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
28404 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTTA
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATG-TTTTTTTA
* *
28469 GTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGTGAAATAAATAATTTGGA
65 GTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAA
* *
28534 ACGATATTTGGTCGAATTTGCATTTAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATAT
130 ACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATAT
* * *
28599 GAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACTAGGACTAATACACCGGATCCCATCAGA
195 GAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGA
*
28664 ACTCCGCAGTTGAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
260 ACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
* *
28707 GCTGACCTCCTGAGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTTA
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATG-TTTTTTTA
** *
28772 GTTGTATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGGGAAATAAATAATTTTG-
65 GTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAA-TTTGA
* * *
28836 AATGATATTTGGTCGAATTTGCATTTAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATA
129 AACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATA
* * *
28901 TGAATAGATTGCGCAAGAGTTGACGGGTGCGATCGTACCAGCACTAATGCACCGGATCCCCTTAG
194 TGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAG
*
28966 AACTCCGCAGTTAAGCGTTCTTGGGCGAGAGTAGTACTAGGATG
259 AACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
* *
29010 GGTGACCTCGTGGGAAGTCCTCGTGTTGCACCCCTCCCGTTTTATTTCATATAATGTTTTTTTTA
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATG-TTTTTTTA
*
29075 GTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGGA
65 GTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAA
* *
29140 ACGATATTTGGTCGAATTTGTATTTAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATAT
130 ACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATAT
* * * **
29205 GAATAGATTGCGCAAGAGTTGACGGGTGCGATCATAGCAGCACCAATGCACCAGATCCCAAGAGA
195 GAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGA
* * *
29270 ACTCCGCAGTTAAGCGTGCTTAGGTGAGAGGAGTACTAGGATG
260 ACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
* * *
29313 GGTGACCTTCTGGGAAGTCCTCGTCTTGCACCCCTCCCATTTTGTTTTCATATAATGTTTTTTTT
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTT-ATTTCATATAATG-TTTTTTT
*
29378 AGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGTGAAATAAATAATTTGA
64 AGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGA
* * * * *
29443 AACGATATTTGGTTGAATTTGCATTTAAATCCGAGGCGCAAGTGCGATAAGTGGCAGCTTTTATA
129 AACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATA
29508 TGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAG
194 TGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAG
*
29573 AACTCTGCAGTTAA------------G-GAG-A--ACTAGGATG
259 AACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
* *
29601 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATCTTATTTCATATAATATTTTTTTTA
1 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAAT-GTTTTTTTA
* * * * *
29666 GTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTTTTTTCGTTTTGTGAAATAAATATTTTGGA
65 GTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAA
* *
29731 ACGATATTTGGTCGAAATTGGATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATAT
130 ACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATAT
* * * * **
29796 GACTAGATTGCGCAAGAGTTGACGGGTGCGATCATAGCAGCACCAATGCACCAGATCCCAAGAGA
195 GAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGA
* * * * *
29861 ACTCTGTAGTTAAGCGTGCTT-AGCTGAGAGGAGTACTAGGATA
260 ACTCCGCAGTTAAGCGTGCTTGGGC-GAGAGTAGTACTAGGATG
29904 GGTGACCT
1 GGTGACCT
29912 TCGGATAAGA
Statistics
Matches: 7093, Mismatches: 646, Indels: 281
0.88 0.08 0.04
Matches are distributed among these distances:
281 12 0.00
282 232 0.03
283 4 0.00
284 1 0.00
286 1 0.00
287 209 0.03
288 49 0.01
290 1 0.00
291 4 0.00
292 6 0.00
294 5 0.00
295 1 0.00
297 1 0.00
298 69 0.01
299 8 0.00
300 335 0.05
301 1040 0.15
302 2043 0.29
303 2072 0.29
304 629 0.09
305 64 0.01
306 4 0.00
307 13 0.00
308 1 0.00
309 1 0.00
310 1 0.00
311 3 0.00
312 2 0.00
314 1 0.00
316 7 0.00
317 2 0.00
318 2 0.00
319 2 0.00
320 2 0.00
321 5 0.00
322 1 0.00
323 2 0.00
324 2 0.00
325 1 0.00
328 1 0.00
329 2 0.00
330 2 0.00
331 1 0.00
332 5 0.00
333 2 0.00
334 2 0.00
335 2 0.00
336 2 0.00
337 8 0.00
339 1 0.00
341 1 0.00
342 3 0.00
343 1 0.00
344 1 0.00
345 1 0.00
346 12 0.00
347 4 0.00
349 3 0.00
350 1 0.00
351 200 0.03
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (302 bp):
GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTAG
TTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAA
CGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATG
AATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAA
CTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
Found at i:24455 original size:49 final size:48
Alignment explanation
Indices: 24381--24477 Score: 149
Period size: 49 Copynumber: 2.0 Consensus size: 48
24371 ATAGCAGCAC
* * *
24381 TAATGCACCGGATCCCCTCAGAACTCCGCAGTTAAGCGTGCTTAGGCG
1 TAATGCACCGGATCCCATCAAAACTCCGCAGGTAAGCGTGCTTAGGCG
*
24429 NTAATGCACCGGATCCCATCAAAACTCCGCAGGTAAGCGTGCTTGGGCG
1 -TAATGCACCGGATCCCATCAAAACTCCGCAGGTAAGCGTGCTTAGGCG
24478 AGAGTAGTAC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (48 bp):
TAATGCACCGGATCCCATCAAAACTCCGCAGGTAAGCGTGCTTAGGCG
Found at i:30031 original size:140 final size:140
Alignment explanation
Indices: 29775--30051 Score: 396
Period size: 140 Copynumber: 2.0 Consensus size: 140
29765 GCGCAAGTGC
* * *
29775 GATAAGAGGCAGCCTTTATATGACTAGATTGCGCAAGAGTTGACGGGTGCGATCATAGCAGCACC
1 GATAAGAGGCAGCCTTTATATGAATAGATTGCGAAAGAGTTGACGGGTGCGATCATACCAGCACC
* * * *
29840 AATGCACCAGATCCCAAGAGAACTCTGTAGTTAAGCGTGCTTAGCTGAGAGGAGTACTAGGATAG
66 AATGCACCAGATCCCAACAGAACTCTGCAGTTAAGCGTGCTTAGCTAAGAGGAGAACTAGGATAG
29905 GTGACCTTCG
131 GTGACCTTCG
* *
29915 GATAAGAGGCAGCCTTTATATGAATAGATTGCGAAAGAGTTGATGGGTGCGATCATACCAGCACT
1 GATAAGAGGCAGCCTTTATATGAATAGATTGCGAAAGAGTTGACGGGTGCGATCATACCAGCACC
* * * *
29980 AATGTACC-GAATCCCATCAGAACTCTGCAGTTTAGCGTGCTTGGGC-AAGAGGAGAACTAGGAT
66 AATGCACCAG-ATCCCAACAGAACTCTGCAGTTAAGCGTGCTT-AGCTAAGAGGAGAACTAGGAT
*
30043 GGGTGACCT
129 AGGTGACCT
30052 CCTGGGAAGT
Statistics
Matches: 121, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
139 1 0.01
140 118 0.98
141 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.23
Consensus pattern (140 bp):
GATAAGAGGCAGCCTTTATATGAATAGATTGCGAAAGAGTTGACGGGTGCGATCATACCAGCACC
AATGCACCAGATCCCAACAGAACTCTGCAGTTAAGCGTGCTTAGCTAAGAGGAGAACTAGGATAG
GTGACCTTCG
Found at i:30471 original size:302 final size:302
Alignment explanation
Indices: 29925--30710 Score: 1326
Period size: 302 Copynumber: 2.6 Consensus size: 302
29915 GATAAGAGGC
* ** * * *** *
29925 AGCCTTTATATGAATAGATTGCGAAAGAGTTGATGGGTGCGATCATACCAGCACTAATGTACCGA
1 AGCCTTTATATGAATAGATTGTGCTAGAGTTGATGCGTGCGATCTTACCAGCACTAAAAAACCGG
* * * * * * *
29990 ATCCCATCAGAACTCTGCAGTTTAGCGTGCTTGGGCAAGAGGAGAACTAGGATGGGTGACCTCCT
66 ATCCTATCAGAACTCCGCAATTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCT
30055 GGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTCCATATAATATTTTTTTAGTTGCGTTTTGT
131 GGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTCCATATAATATTTTTTTAGTTGCGTTTTGT
*
30120 CCACGTGGTGTAACTCATTCGTTATTTGCGTTCTGTGAAATAAATAATTTGGAACGATATTTGGT
196 CCACGTGGTGAAACTCATTCGTTATTTGCGTTCTGTGAAATAAATAATTTGGAACGATATTTGGT
* *
30185 CGAATTTGTATTTAAATTCGAGGCGCAAGTGTGATATGGGGT
261 CGAATTTGTATTTAAATTCGAAGCGCAAGTGGGATATGGGGT
30227 AGCCTTTATATGAATAGATTGTGCTAGAGTTGATGCGTGCGATCTTACCAGCACTAAAAAACCGG
1 AGCCTTTATATGAATAGATTGTGCTAGAGTTGATGCGTGCGATCTTACCAGCACTAAAAAACCGG
*
30292 ATCCTATCAGAACTCCGCAATTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGAGTGACCTCCT
66 ATCCTATCAGAACTCCGCAATTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCT
30357 GGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTCCATATAATATTTTTTTAGTTGCGTTTTGT
131 GGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTCCATATAATATTTTTTTAGTTGCGTTTTGT
30422 CCACGTGGTGAAACTCATTCGTTATTT-CAGTTCTGTGAAATAAATAATTTGGAACGATATTTGG
196 CCACGTGGTGAAACTCATTCGTTATTTGC-GTTCTGTGAAATAAATAATTTGGAACGATATTTGG
*
30486 TCGAATTTGTATTTAAGTTCGAAGCGCAAGTGGGATATGGGGT
260 TCGAATTTGTATTTAAATTCGAAGCGCAAGTGGGATATGGGGT
30529 AGCCTTTATATGAATAGATTGTGCTAGAGTTGATGCGTGCGATCTTACCAGCACTAAAAAACCGG
1 AGCCTTTATATGAATAGATTGTGCTAGAGTTGATGCGTGCGATCTTACCAGCACTAAAAAACCGG
30594 ATCCTATCAGAACTCCGCAATTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCT
66 ATCCTATCAGAACTCCGCAATTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCT
*
30659 GGGAAGTCCTCGTGTTGCACCCCTCCAATTTTATATCTCAT-TAA-ATTTTTTT
131 GGGAAGTCCTCGTGTTGCACCCCTCCCATTTTAT-TC-CATATAATATTTTTTT
30711 TNATTCGTTA
Statistics
Matches: 458, Mismatches: 23, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
301 1 0.00
302 449 0.98
303 5 0.01
304 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.33
Consensus pattern (302 bp):
AGCCTTTATATGAATAGATTGTGCTAGAGTTGATGCGTGCGATCTTACCAGCACTAAAAAACCGG
ATCCTATCAGAACTCCGCAATTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCT
GGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTCCATATAATATTTTTTTAGTTGCGTTTTGT
CCACGTGGTGAAACTCATTCGTTATTTGCGTTCTGTGAAATAAATAATTTGGAACGATATTTGGT
CGAATTTGTATTTAAATTCGAAGCGCAAGTGGGATATGGGGT
Found at i:31260 original size:303 final size:303
Alignment explanation
Indices: 30713--32780 Score: 3640
Period size: 303 Copynumber: 6.8 Consensus size: 303
30703 ATTTTTTTTN
*
30713 ATTCGTTATTTGCGTTTTGTGAAATAAATAATTTGGAACGATATTTGGTCGAATTTGCATTTAAA
1 ATTCGTTATTTGCGTTTTGTGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTTAAA
30778 TTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTG
66 TTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTG
*
30843 CGATCATACCAGCACTAATGCACCGGATCCCATTAGAACTCCGCAGTTAAGCGTGCTTGGGCGAG
131 CGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAG
* *
30908 AGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGTTGCACCCTTCCCATTTTATTTTCA
196 AGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTA-TTTCA
30973 TATAATGTTTTTTTTA-TTGCGTTTTCTCCACGTGGTGTAACTC
260 TATAATGTTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTC
** * * *
31016 ATTCGTTATTTGCGTTTTCCGAAATAAATATTTTGGAACGATATTTGGTCGAATTTACATTTAAA
1 ATTCGTTATTTGCGTTTTGTGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTTAAA
* * * *
31081 TTCGAGGCGCAAGTGTGATATGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGATGCGTG
66 TTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTG
* *
31146 CGATCTTACCAGCACTAATGCACCGGATCCTATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAG
131 CGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAG
*
31211 AGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCCATTTTATTTCAT
196 AGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCAT
31276 ATAATGTTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTC
261 ATAATGTTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTC
* *
31319 ATTCGTTATTTGCATTTTGTGAAATAAATAATTTGAAACGATATTTGGTTGAATTTGCATTTAAA
1 ATTCGTTATTTGCGTTTTGTGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTTAAA
*
31384 -TCTGAGGCGCAAGTGCGATAAGTGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGT
66 TTC-GAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGT
31448 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
130 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
31513 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCA
195 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCA
31578 TATAATGTTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTC
260 TATAATGTTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTC
* *
31622 ATTCGTTATTTGCGTTTTGTGAAATAAATATTTTGGAACGATATTTGGTCGAATTTGCATTTAAA
1 ATTCGTTATTTGCGTTTTGTGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTTAAA
* *
31687 TCCGAGGCGCAAGTGCGATAAGTGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTG
66 TTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTG
* *
31752 CGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCATGTTTGGGCGAG
131 CGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAG
* *
31817 AGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCGCATTCTATTTCAT
196 AGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCAT
* *
31882 ATAA--TTTTTTTTAGTTGTGTTTTCTCCACGTGGTGTCACTC
261 ATAATGTTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTC
*
31923 ATTCGTTATTTGCATTTTGTGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTTAAA
1 ATTCGTTATTTGCGTTTTGTGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTTAAA
* *
31988 TCCGAGGCGCAAGTGCGATAAGTGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTG
66 TTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTG
32053 CGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAG
131 CGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAG
32118 AGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCAT
196 AGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCAT
*
32183 ATAATGTTTTTTTTAGTTGCGTTTTCTCCACGTCGTGTAACTC
261 ATAATGTTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTC
* *
32226 ATTCATTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTTAAA
1 ATTCGTTATTTGCGTTTTGTGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTTAAA
32291 TTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTG
66 TTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTG
32356 CGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAG
131 CGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAG
32421 AGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCAT
196 AGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCAT
* *
32486 ATAATGTTTTTTTTAGTTGTGTTTTCTCCACATGGTGTAACTC
261 ATAATGTTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTC
* *
32529 ATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAA
1 ATTCGTTATTTGCGTTTTGTGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTTAAA
* * *
32594 TTCGAGGCGCAAGTGCGATAAGAGGCAGCCTTTATATGAATCGATTGCGCAAGAGTTGACGGGTA
66 TTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTG
* *
32659 CGATCATAGCAGCACTAATGCACCGGATCCCATCAGAACTTCGCAGTTAAGCGTGCTTGGGCGAG
131 CGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAG
* * * * * *
32724 AGTAGTACTAGGTTGGGTGATCTTCTGGGATGTCCTGGTGTTGCACCCCTCACATTT
196 AGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTT
32781 NNNNNNNNNN
Statistics
Matches: 1691, Mismatches: 69, Indels: 10
0.96 0.04 0.01
Matches are distributed among these distances:
301 292 0.17
302 23 0.01
303 1375 0.81
304 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (303 bp):
ATTCGTTATTTGCGTTTTGTGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTTAAA
TTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTG
CGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAG
AGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCAT
ATAATGTTTTTTTTAGTTGCGTTTTCTCCACGTGGTGTAACTC
Found at i:55073 original size:21 final size:21
Alignment explanation
Indices: 55033--55091 Score: 75
Period size: 21 Copynumber: 2.8 Consensus size: 21
55023 AATCTTGAAT
*
55033 GAAATTGAGAGAAGAA-AAAAA
1 GAAA-TGAGAGAAAAAGAAAAA
55054 GAAATGAGAGAAAAAGAAAAA
1 GAAATGAGAGAAAAAGAAAAA
* *
55075 GAAATAAAAGAAAAAGA
1 GAAATGAGAGAAAAAGA
55092 TGAAAATGAG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
20 10 0.29
21 24 0.71
ACGTcount: A:0.71, C:0.00, G:0.22, T:0.07
Consensus pattern (21 bp):
GAAATGAGAGAAAAAGAAAAA
Found at i:55083 original size:15 final size:14
Alignment explanation
Indices: 55044--55091 Score: 60
Period size: 15 Copynumber: 3.3 Consensus size: 14
55034 AAATTGAGAG
55044 AAGAAAAAAAGAAA
1 AAGAAAAAAAGAAA
* *
55058 TGAGAGAAAAAGAAA
1 -AAGAAAAAAAGAAA
55073 AAGAAATAAAAGAAA
1 AAGAAA-AAAAGAAA
55088 AAGA
1 AAGA
55092 TGAAAATGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 4 0.14
15 24 0.86
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.04
Consensus pattern (14 bp):
AAGAAAAAAAGAAA
Found at i:59501 original size:12 final size:12
Alignment explanation
Indices: 59484--59537 Score: 51
Period size: 12 Copynumber: 4.7 Consensus size: 12
59474 AGACTTTTCA
*
59484 CTTTTTTTTCTT
1 CTTTTTTTACTT
59496 CTTTTTTTACTT
1 CTTTTTTTACTT
59508 -TTTTTTT-CTT
1 CTTTTTTTACTT
* *
59518 -TTTTGCTCACTT
1 CTTTT-TTTACTT
59530 CTTTTTTT
1 CTTTTTTT
59538 TTCGAATTTC
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
10 7 0.21
11 8 0.24
12 15 0.44
13 4 0.12
ACGTcount: A:0.04, C:0.17, G:0.02, T:0.78
Consensus pattern (12 bp):
CTTTTTTTACTT
Found at i:59529 original size:22 final size:20
Alignment explanation
Indices: 59478--59537 Score: 68
Period size: 19 Copynumber: 2.8 Consensus size: 20
59468 CTCGCAAGAC
59478 TTTTCACTTTTTTTTCTTCTTT
1 TTTTCAC-TTTTTTT-TTCTTT
59500 TTTT-ACTTTTTTTTTCTTT
1 TTTTCACTTTTTTTTTCTTT
59519 TTTGCTCACTTCTTTTTTT
1 TTT--TCACTT-TTTTTTT
59538 TTCGAATTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
19 9 0.26
20 7 0.21
21 3 0.09
22 8 0.24
23 7 0.21
ACGTcount: A:0.05, C:0.17, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTTCACTTTTTTTTTCTTT
Found at i:61184 original size:20 final size:19
Alignment explanation
Indices: 61161--61225 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
61151 AAGCTCAAAC
61161 GAGCTAAAGTAAGCTAAATT
1 GAGCTAAAGT-AGCTAAATT
61181 GAGCTCAAACG-AGCTAAATT
1 GAGCT-AAA-GTAGCTAAATT
* * * *
61201 AAGCTCATGTGAGCTAAATC
1 GAGCTAAAGT-AGCTAAATT
61221 GAGCT
1 GAGCT
61226 GGGAAAAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 30 0.83
21 3 0.08
22 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (19 bp):
GAGCTAAAGTAGCTAAATT
Found at i:62613 original size:21 final size:21
Alignment explanation
Indices: 62568--62630 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
62558 TTTGAACCAT
* *
62568 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
62590 TACCATTTCGTACCAATTCCA
1 TACCATTTCGTACCAATTCCA
* *
62611 TACTATTTCGAACCAATTCC
1 TACCATTTCGTACCAATTCC
62631 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 24 0.65
22 13 0.35
ACGTcount: A:0.33, C:0.32, G:0.05, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:68884 original size:19 final size:20
Alignment explanation
Indices: 68860--68904 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
68850 CTTTTCATTC
*
68860 TCTTTTTTTGAATTTTC-TT
1 TCTTTTTTTCAATTTTCTTT
*
68879 TCTTTTTTTCATTTTTCTTT
1 TCTTTTTTTCAATTTTCTTT
68899 TCTTTT
1 TCTTTT
68905 GTATTTTCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.07, C:0.13, G:0.02, T:0.78
Consensus pattern (20 bp):
TCTTTTTTTCAATTTTCTTT
Found at i:71633 original size:13 final size:13
Alignment explanation
Indices: 71617--71664 Score: 78
Period size: 13 Copynumber: 3.6 Consensus size: 13
71607 AAAAAATTCA
*
71617 AAAAAAAATTTTG
1 AAAAAAAATTGTG
71630 AAAAAAAATTGTG
1 AAAAAAAATTGTG
71643 AAAAAAAAATTGTG
1 -AAAAAAAATTGTG
71657 AAAAAAAA
1 AAAAAAAA
71665 GAGAGCTAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
13 20 0.61
14 13 0.39
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.21
Consensus pattern (13 bp):
AAAAAAAATTGTG
Found at i:71633 original size:14 final size:14
Alignment explanation
Indices: 71616--71664 Score: 82
Period size: 14 Copynumber: 3.6 Consensus size: 14
71606 AAAAAAATTC
*
71616 AAAAAAAAATTTTG
1 AAAAAAAAATTGTG
71630 -AAAAAAAATTGTG
1 AAAAAAAAATTGTG
71643 AAAAAAAAATTGTG
1 AAAAAAAAATTGTG
71657 AAAAAAAA
1 AAAAAAAA
71665 GAGAGCTAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
13 12 0.36
14 21 0.64
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.20
Consensus pattern (14 bp):
AAAAAAAAATTGTG
Found at i:73722 original size:22 final size:22
Alignment explanation
Indices: 73692--73735 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
73682 TTTGGTATTT
73692 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
73714 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
73736 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.36, T:0.25
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:80063 original size:27 final size:27
Alignment explanation
Indices: 80033--80210 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
80023 ATATTGAGCC
* *
80033 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
80060 CGCACACTTAGTGCTACGTAATCAATT
1 CGCACACTTAGTGCTACATAATCAACT
*
80087 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
80115 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
80142 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
80169 CGCACACTTAGTACAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
80196 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80211 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:80171 original size:82 final size:81
Alignment explanation
Indices: 80054--80209 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
80044 TGCTATATAA
* * * *
80054 TCAACTCGCACACTTAGTGCTACGTAATCAATTCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAATTCGCACACTTAGTACAACATAGTC-GAATCGCA
80119 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * *
80136 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTACAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAATTCGCACACTTAGTACAACATAGTCGAATCGCA
80200 CACTTAGTGC
65 CACTTAGTGC
80210 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAATTCGCACACTTAGTACAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:88405 original size:8 final size:8
Alignment explanation
Indices: 88392--88416 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
88382 ATTAAGGACT
88392 AAAATGTG
1 AAAATGTG
88400 AAAATGTG
1 AAAATGTG
88408 AAAATGTG
1 AAAATGTG
88416 A
1 A
88417 GGGCTAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (8 bp):
AAAATGTG
Found at i:88928 original size:43 final size:42
Alignment explanation
Indices: 88832--88936 Score: 113
Period size: 42 Copynumber: 2.5 Consensus size: 42
88822 AACTTATGAT
*
88832 TTACATGTAAGACCAAGTCTGGGACATCAGCATCGTATTTGA
1 TTACATGTAAGACCAAGTCTAGGACATCAGCATCGTATTTGA
*** ** *
88874 TTTTGTGTAAGACCCTGTCTAGGACAGT-GGCATCGATATTTGA
1 TTACATGTAAGACCAAGTCTAGGACA-TCAGCATCG-TATTTGA
*
88917 TTACATGTAAGACCACGTCT
1 TTACATGTAAGACCAAGTCT
88937 GAGACGTTGG
Statistics
Matches: 49, Mismatches: 12, Indels: 3
0.77 0.19 0.05
Matches are distributed among these distances:
42 26 0.53
43 23 0.47
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (42 bp):
TTACATGTAAGACCAAGTCTAGGACATCAGCATCGTATTTGA
Found at i:88948 original size:43 final size:43
Alignment explanation
Indices: 88793--88949 Score: 128
Period size: 43 Copynumber: 3.7 Consensus size: 43
88783 TGTGTTTTCG
* *
88793 TGTAAGACCACGTTTGGGACGTTGGCATC-A-ACTTATGATTTACA
1 TGTAAGACCACGTCTGAGACGTTGGCATCGATA-TT-TGA-TTACA
* * * ** ***
88837 TGTAAGACCAAGTCTGGGACATCAGCATCG-TATTTGATTTTG
1 TGTAAGACCACGTCTGAGACGTTGGCATCGATATTTGATTACA
88879 TGTAAGACC-CTGTCT-AGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGA-GAC-GTTGGCATCGATATTTGATTACA
88922 TGTAAGACCACGTCTGAGACGTTGGCAT
1 TGTAAGACCACGTCTGAGACGTTGGCAT
88950 TGTACGAGCT
Statistics
Matches: 88, Mismatches: 16, Indels: 19
0.72 0.13 0.15
Matches are distributed among these distances:
42 25 0.28
43 34 0.39
44 28 0.32
45 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGAGACGTTGGCATCGATATTTGATTACA
Found at i:90125 original size:43 final size:43
Alignment explanation
Indices: 90059--90172 Score: 158
Period size: 43 Copynumber: 2.7 Consensus size: 43
90049 TGTTTTTGCT
* *
90059 CGGCCTAGTCATA-GGAGCTTGTCTAATGTTTTTGTAAGGCACA
1 CGGCCTAGTCACACGG-GCATGTCTAATGTTTTTGTAAGGCACA
*
90102 CGGCCTAGTCACACGGGCATGTCTAATGTTTTTGTAAGGCATA
1 CGGCCTAGTCACACGGGCATGTCTAATGTTTTTGTAAGGCACA
* * *
90145 CGACCTAGTCACACGGGCGTGGCTAATG
1 CGGCCTAGTCACACGGGCATGTCTAATG
90173 CCGTGTGGGA
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
43 62 0.97
44 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (43 bp):
CGGCCTAGTCACACGGGCATGTCTAATGTTTTTGTAAGGCACA
Found at i:94183 original size:30 final size:30
Alignment explanation
Indices: 94149--94209 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
94139 TGGGATAGAA
*
94149 TGATGATGGACTTTGTTTCGGGCTTGCCCT
1 TGATGATGGACTTTGTTTCGGACTTGCCCT
*
94179 TGATGATGGACTTTGTTTCGGATTTGCCCT
1 TGATGATGGACTTTGTTTCGGACTTGCCCT
94209 T
1 T
94210 ACCTCCGCGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.11, C:0.18, G:0.28, T:0.43
Consensus pattern (30 bp):
TGATGATGGACTTTGTTTCGGACTTGCCCT
Found at i:96620 original size:43 final size:42
Alignment explanation
Indices: 96465--96621 Score: 147
Period size: 43 Copynumber: 3.7 Consensus size: 42
96455 TGTGTTCTCG
* * *
96465 TGTAAGACCACATCTGGGGCGTTGGCATCG-ACTTATGATTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCGTA-TT-TGA-TTACA
* * * * *
96509 TGTAAGACCATGTCTGGGACATCGACATCGTATTTGATTTCG
1 TGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATTACA
* * *
96551 TGTAAAACCTA-GTTTGGGACAGTGGCATCAGTATTTGATTACA
1 TGTAAGACC-ACGTCTGGGACATTGGCATC-GTATTTGATTACA
*
96594 TGTAAGACCACGTCTGGGTCATTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
96622 TGTACGAGCT
Statistics
Matches: 90, Mismatches: 19, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
42 26 0.29
43 37 0.41
44 26 0.29
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATTACA
Found at i:104955 original size:24 final size:24
Alignment explanation
Indices: 104923--104993 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
104913 CTGTCAGGAG
104923 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
104947 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
104971 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
104994 GGAAATCTAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.35, C:0.01, G:0.38, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:105005 original size:48 final size:48
Alignment explanation
Indices: 104923--105016 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
104913 CTGTCAGGAG
** * *
104923 AGGATTTAGGAGTTGATAAGGGATAGGATTTAGGAGTTGAT-AAGGGAT
1 AGGATTTAGGAGCAGATAAGGGA-AGGATCTAGGAGCTGATCAAGGGAT
104971 AGGATTTAGGAGCAGATAAGGG-AGGAAATCTAGGAGCTGATCAAGG
1 AGGATTTAGGAGCAGATAAGGGAAGG--ATCTAGGAGCTGATCAAGG
105017 AACAAGAAGT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 3 0.08
48 32 0.82
49 4 0.10
ACGTcount: A:0.35, C:0.04, G:0.37, T:0.23
Consensus pattern (48 bp):
AGGATTTAGGAGCAGATAAGGGAAGGATCTAGGAGCTGATCAAGGGAT
Found at i:106487 original size:54 final size:54
Alignment explanation
Indices: 106409--106523 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 54
106399 TGGAGGAAGC
* * *
106409 GTTCTGGTGGCTATGCCACAATTATCT-AATCTGGTGGCTCTGCCACATATTTCT
1 GTTCTGGTGGCTATACCACAATTATCTGAATCTGGTGACTCTGCCACAT-TATCT
* * * *
106463 GTTCTGGTGGCTCTACCACGATTATCTGTATCTGGTGACTCTGTCACATTATCT
1 GTTCTGGTGGCTATACCACAATTATCTGAATCTGGTGACTCTGCCACATTATCT
106517 GTTCTGG
1 GTTCTGG
106524 CAGCAATGCT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (54 bp):
GTTCTGGTGGCTATACCACAATTATCTGAATCTGGTGACTCTGCCACATTATCT
Found at i:106517 original size:27 final size:27
Alignment explanation
Indices: 106409--106523 Score: 135
Period size: 27 Copynumber: 4.3 Consensus size: 27
106399 TGGAGGAAGC
*
106409 GTTCTGGTGGCTATGCCACAATTATCT
1 GTTCTGGTGGCTCTGCCACAATTATCT
**
106436 AATCTGGTGGCTCTGCCACATATT-TCT
1 GTTCTGGTGGCTCTGCCACA-ATTATCT
* *
106463 GTTCTGGTGGCTCTACCACGATTATCT
1 GTTCTGGTGGCTCTGCCACAATTATCT
* *
106490 GTATCTGGTGACTCTGTCAC-ATTATCT
1 GT-TCTGGTGGCTCTGCCACAATTATCT
106517 GTTCTGG
1 GTTCTGG
106524 CAGCAATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
26 8 0.11
27 50 0.67
28 17 0.23
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
GTTCTGGTGGCTCTGCCACAATTATCT
Found at i:114217 original size:27 final size:27
Alignment explanation
Indices: 114177--114288 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
114167 AGGAAGCGCC
*
114177 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
114204 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* *
114231 CTGGTGGCTCTGCCACGATTATCTATAT
1 CTGGTGGCTCTGCCACAATTATCT-GAT
* ** *
114259 CTGGTGACTCTATCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
114285 CTGG
1 CTGG
114289 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 8 0.11
27 47 0.65
28 17 0.24
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:114283 original size:54 final size:54
Alignment explanation
Indices: 114177--114288 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
114167 AGGAAGCGCC
* * *
114177 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTT
* * * *
114231 CTGGTGGCTCTGCCACGATTATCTATATCTGGTGACTCTATCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCT-GATCTGGTGACTCTACCACATATATCTGTT
114285 CTGG
1 CTGG
114289 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTT
Found at i:120449 original size:24 final size:25
Alignment explanation
Indices: 120422--120473 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
120412 GCCTAGCCTC
*
120422 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
**
120446 TTTTGGTAAACTAGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
120471 TTT
1 TTT
120474 CGCACTTCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTAGGGCAAAGCCCT
Found at i:120576 original size:21 final size:21
Alignment explanation
Indices: 120521--120566 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
120511 TATAGTGAGT
120521 ATATCA-AAGCATATCATGTGC
1 ATATCATAA-CATATCATGTGC
*
120542 ATCTCATAACATATCATGTGC
1 ATATCATAACATATCATGTGC
120563 ATAT
1 ATAT
120567 TATGTCATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 20 0.91
22 2 0.09
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.33
Consensus pattern (21 bp):
ATATCATAACATATCATGTGC
Found at i:126899 original size:34 final size:33
Alignment explanation
Indices: 126856--126920 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 33
126846 AATATCAATA
*
126856 TGGGTCTTAGCCTAATACAATAACAGTATCAGTG
1 TGGGCCTTAGCCTAATACAAT-ACAGTATCAGTG
* * *
126890 TGGGCCTTAGCCTATTTCAGTACAGTATCAG
1 TGGGCCTTAGCCTAATACAATACAGTATCAG
126921 AAATGCATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
33 10 0.37
34 17 0.63
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.31
Consensus pattern (33 bp):
TGGGCCTTAGCCTAATACAATACAGTATCAGTG
Found at i:126981 original size:22 final size:23
Alignment explanation
Indices: 126942--126985 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
126932 AAGATCCTAC
*
126942 CCATCCATCCTCTACACTCCACT
1 CCATCCAGCCTCTACACTCCACT
126965 CCATCCAGCC-CTACACTCCAC
1 CCATCCAGCCTCTACACTCCAC
126986 ATGGAGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.23, C:0.55, G:0.02, T:0.20
Consensus pattern (23 bp):
CCATCCAGCCTCTACACTCCACT
Found at i:136496 original size:34 final size:33
Alignment explanation
Indices: 136458--136527 Score: 86
Period size: 34 Copynumber: 2.1 Consensus size: 33
136448 TTAGTTGCAA
136458 TATCAATGTGGACATTAGCCCAATACAGTAGCAG
1 TATCAATGTGGACATTAGCCCAATACAGTA-CAG
* * * * *
136492 TATCAGTGTGGGCCTTAGCCCATTTCAGTACAG
1 TATCAATGTGGACATTAGCCCAATACAGTACAG
136525 TAT
1 TAT
136528 AAGAAATGCA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
33 6 0.19
34 25 0.81
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (33 bp):
TATCAATGTGGACATTAGCCCAATACAGTACAG
Found at i:139760 original size:29 final size:29
Alignment explanation
Indices: 139694--139816 Score: 203
Period size: 29 Copynumber: 4.3 Consensus size: 29
139684 GTCTACATAT
*
139694 ATTCATATGGCCCATTAGGCCC-AATCTC
1 ATTCATATGGCCCATTAGGCCCAAATCAC
*
139722 ACTCATATGGCCCATTAGGCCCAAATCAC
1 ATTCATATGGCCCATTAGGCCCAAATCAC
*
139751 ATTCGTATGGCCCATTAGGCCCAAATCAC
1 ATTCATATGGCCCATTAGGCCCAAATCAC
*
139780 ATTCATACGGCCCATTAGGCCCAAATCAC
1 ATTCATATGGCCCATTAGGCCCAAATCAC
139809 ATTCATAT
1 ATTCATAT
139817 ACATGCTTTT
Statistics
Matches: 87, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
28 21 0.24
29 66 0.76
ACGTcount: A:0.29, C:0.32, G:0.14, T:0.25
Consensus pattern (29 bp):
ATTCATATGGCCCATTAGGCCCAAATCAC
Found at i:163492 original size:26 final size:26
Alignment explanation
Indices: 163463--163514 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
163453 AATGGTAATT
*
163463 AAATGTTA-AATTTATATGCTGTTATG
1 AAATGTTAGAATTTATAT-ATGTTATG
163489 AAATGTTAGAATTTATATATGTTATG
1 AAATGTTAGAATTTATATATGTTATG
163515 GCCAAATATG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 15 0.62
27 9 0.38
ACGTcount: A:0.37, C:0.02, G:0.15, T:0.46
Consensus pattern (26 bp):
AAATGTTAGAATTTATATATGTTATG
Found at i:169890 original size:25 final size:25
Alignment explanation
Indices: 169862--169931 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
169852 CTCTTTTAAT
*
169862 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
169887 AACTGGGGCAAAGGCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
169912 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
169932 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:170769 original size:27 final size:27
Alignment explanation
Indices: 170739--170803 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
170729 GGGCATATTC
*
170739 GTCATTTTACCATACA-AGGGTATTACA
1 GTCATTTTACCATACAGAGGCT-TTACA
* * *
170766 GTCACTTTACCCTACAGAGGCTTTACG
1 GTCATTTTACCATACAGAGGCTTTACA
*
170793 GTCTTTTTACC
1 GTCATTTTACC
170804 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 27 0.87
28 4 0.13
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGAGGCTTTACA
Found at i:170887 original size:27 final size:27
Alignment explanation
Indices: 170834--171074 Score: 169
Period size: 27 Copynumber: 8.9 Consensus size: 27
170824 TTTCATCCTA
* * * * *
170834 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* *
170861 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
** *** *
170888 CAACAGTATTTTTATAATTTTTAGAAAGC
1 CAAGGGTATTTCGGTAA-TTTTATAAA-C
* * *
170917 CAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAC
* * *
170944 CAGGGGTATTTTGGTAATTTTATAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAC
** * *
170971 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
*
170998 C-AGTGGTATTTCGGTAATTTTACAAAC
1 CAAG-GGTATTTCGGTAATTTTATAAAC
* * * *
171025 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* * *
171052 TAGGGGTATTTTGGTAATTTTAT
1 CAAGGGTATTTCGGTAATTTTAT
171075 CCTACAGGGG
Statistics
Matches: 172, Mismatches: 38, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
26 2 0.01
27 141 0.82
28 15 0.09
29 14 0.08
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTATAAAC
Found at i:171037 original size:81 final size:81
Alignment explanation
Indices: 170921--171071 Score: 216
Period size: 81 Copynumber: 1.9 Consensus size: 81
170911 GAAAGCCAAG
* ** * *
170921 GGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTATAAA-TTGAGGGTATTTCGG
1 GGTATTTCGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGG
170985 TAATTTCACAAACCAGT
65 TAATTTCACAAACCAGT
*
171002 GGTATTTCGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGTATTTCGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGG
171066 TAATTT
65 TAATTT
171072 TATCCTACAG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
80 1 0.02
81 59 0.95
82 2 0.03
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (81 bp):
GGTATTTCGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGT
AATTTCACAAACCAGT
Found at i:171083 original size:27 final size:26
Alignment explanation
Indices: 170920--171103 Score: 181
Period size: 27 Copynumber: 6.8 Consensus size: 26
170910 AGAAAGCCAA
**
170920 GGGTATTTCT-GTAATTTTGTAAATCAG
1 GGGTATTT-TGGTAATTTTACAAA-CAG
* **
170947 GGGTATTTTGGTAATTTTATAAATTG
1 GGGTATTTTGGTAATTTTACAAACAG
* *
170973 AGGGTATTTCGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAA-CAG
* *
171001 TGGTATTTCGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAAC-AG
171028 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAAC-AG
**
171055 GGGTATTTTGGTAATTTTATCCTACAG
1 GGGTATTTTGGTAATTTTA-CAAACAG
* *
171082 GGGTATTTTAGTAATTTCACAA
1 GGGTATTTTGGTAATTTTACAA
171104 TCGAGGGTAA
Statistics
Matches: 134, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
26 4 0.03
27 126 0.94
28 4 0.03
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.41
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACAG
Found at i:171087 original size:81 final size:81
Alignment explanation
Indices: 170920--171103 Score: 203
Period size: 81 Copynumber: 2.3 Consensus size: 81
170910 AGAAAGCCAA
* ** * *
170920 GGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTCGG
1 GGGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGG
170985 TAATTTCACAAACCAG
66 TAATTTCACAAACCAG
* * *
171001 TGGTATTTCGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTT
1 GGGTATTTCAGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTC
* **
171064 GGTAATTTTATCCTA-CAG
64 GGTAATTTCA-CAAACCAG
* *
171082 GGGTATTTTAGTAATTTCACAA
1 GGGTATTTCAGTAATTTTACAA
171104 TCGAGGGTAA
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
80 1 0.01
81 81 0.94
82 4 0.05
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.41
Consensus pattern (81 bp):
GGGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGG
TAATTTCACAAACCAG
Found at i:171136 original size:27 final size:27
Alignment explanation
Indices: 171102--171299 Score: 236
Period size: 27 Copynumber: 7.3 Consensus size: 27
171092 GTAATTTCAC
* *
171102 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
171129 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
* ** *
171156 AATCGAGGGTGAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * *
171183 AATCAAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
171210 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * * * *
171237 AATCAAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
**
171264 AATCGAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAATGGTAATTTTGTA
171291 AATCGAGGG
1 AATCGAGGG
171300 CATTTCAGTA
Statistics
Matches: 145, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 143 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:171219 original size:81 final size:81
Alignment explanation
Indices: 171102--171299 Score: 299
Period size: 81 Copynumber: 2.4 Consensus size: 81
171092 GTAATTTCAC
* * * *
171102 AATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTTTATAAATC-GAGGGTAAAATGGTAATTTTGTAAATCAAGGGT
*
171166 GAAACAGTAATTCTGTA
65 GAAACAGTAATTCTATA
* *
171183 AATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCAAGGGTG
1 AATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCAAGGGTG
*
171248 AAACGGTAATTCTATA
66 AAACAGTAATTCTATA
*
171264 AATCGAGGGTAAAATGGTAATTTTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTTTATAAATCGAGGG
171300 CATTTCAGTA
Statistics
Matches: 105, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
81 104 0.99
82 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCAAGGGTG
AAACAGTAATTCTATA
Found at i:180057 original size:47 final size:47
Alignment explanation
Indices: 179983--180136 Score: 263
Period size: 47 Copynumber: 3.3 Consensus size: 47
179973 TCCTTCGGGA
*
179983 CTTATCACATATATACACTTTCCCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
180030 CTTATCACATATATACACTTTCACATTCATCACATTTGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
180077 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
180124 CTTATCACATATA
1 CTTATCACATATA
180137 CATATCTTGT
Statistics
Matches: 98, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 98 1.00
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:180109 original size:25 final size:25
Alignment explanation
Indices: 180033--180110 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
180023 ATTAGGCCTT
*
180033 ATCACATATATACACTTTCACATTC
1 ATCACACATATACACTTTCACATTC
* * * * *
180058 AT--CACATTTGC-CATTCGGCCTT-
1 ATCACACATATACACTTTC-ACATTC
180080 ATCACACATATACACTTTCACATTC
1 ATCACACATATACACTTTCACATTC
180105 ATCACA
1 ATCACA
180111 TCGGCCATTA
Statistics
Matches: 37, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 6 0.16
23 9 0.24
24 10 0.27
25 12 0.32
ACGTcount: A:0.32, C:0.31, G:0.04, T:0.33
Consensus pattern (25 bp):
ATCACACATATACACTTTCACATTC
Found at i:182006 original size:13 final size:13
Alignment explanation
Indices: 181988--182012 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
181978 TACTAAATTT
181988 TCATGGATTCAAA
1 TCATGGATTCAAA
182001 TCATGGATTCAA
1 TCATGGATTCAA
182013 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:186237 original size:61 final size:61
Alignment explanation
Indices: 186142--186264 Score: 210
Period size: 61 Copynumber: 2.0 Consensus size: 61
186132 ACTGTAATTG
* * *
186142 TGTTGATAGATCCAGGATCGACTCATTCTTATGTATGTGAAACTTTTGTATCTAGTGAGAC
1 TGTTGATAGATCCAGGATCGACACATTCTTATGTATGTGAAACTTTAGTATCTAGTAAGAC
*
186203 TGTTGATAGATCCAGTATCGACACATTCTTATGTATGTGAAACTTTAGTATCTAGTAAGAC
1 TGTTGATAGATCCAGGATCGACACATTCTTATGTATGTGAAACTTTAGTATCTAGTAAGAC
186264 T
1 T
186265 TTGCCTGTAG
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (61 bp):
TGTTGATAGATCCAGGATCGACACATTCTTATGTATGTGAAACTTTAGTATCTAGTAAGAC
Found at i:186443 original size:21 final size:21
Alignment explanation
Indices: 186419--186463 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
186409 GAATTTGATA
*
186419 TAATTCTGGGTACGGATTGGT
1 TAATTCTGGGTACAGATTGGT
186440 TAATTCTGGGTACAGATTGGT
1 TAATTCTGGGTACAGATTGGT
186461 TAA
1 TAA
186464 CACTGCATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.24, C:0.09, G:0.29, T:0.38
Consensus pattern (21 bp):
TAATTCTGGGTACAGATTGGT
Found at i:191570 original size:41 final size:41
Alignment explanation
Indices: 191519--191602 Score: 116
Period size: 41 Copynumber: 2.0 Consensus size: 41
191509 TCTATTGCAA
* * * *
191519 ATTTTTCAATTTAATATTATAATATCTGAA-GCTATTTTGCC
1 ATTTTCCAATTTAATACTACAATATCT-AAGGCAATTTTGCC
191560 ATTTTCCAATTTAATACTACAATATCTAAGGCAATTTTGCC
1 ATTTTCCAATTTAATACTACAATATCTAAGGCAATTTTGCC
191601 AT
1 AT
191603 AATTTTAATG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
40 2 0.05
41 36 0.95
ACGTcount: A:0.33, C:0.15, G:0.07, T:0.44
Consensus pattern (41 bp):
ATTTTCCAATTTAATACTACAATATCTAAGGCAATTTTGCC
Found at i:193998 original size:30 final size:31
Alignment explanation
Indices: 193954--194030 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 31
193944 AATTTGATAA
193954 ATAAA-TTTTAATTTTGTGC-AAT-TATACAT
1 ATAAACTTTT-ATTTTGTGCAAATGTATACAT
*
193983 ATTAAACTTTTATTTTGGTTCAAATGTATACAT
1 A-TAAACTTTTATTTT-GTGCAAATGTATACAT
*
194016 A-AAACTTTGATTTTG
1 ATAAACTTTTATTTTG
194031 ATTTAATTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
29 1 0.02
30 10 0.24
31 19 0.46
32 3 0.07
33 8 0.20
ACGTcount: A:0.35, C:0.08, G:0.09, T:0.48
Consensus pattern (31 bp):
ATAAACTTTTATTTTGTGCAAATGTATACAT
Found at i:195351 original size:46 final size:45
Alignment explanation
Indices: 195293--195514 Score: 148
Period size: 46 Copynumber: 4.8 Consensus size: 45
195283 ATTCGTGGGT
*
195293 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATTCTGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TATTCTGA
* **
195339 GAGCCAGTGTAAGACCATGTTTGGGACATGACATCGG--TATTGAGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGCCTATTCTGA
* ** * **
195384 CGAGTGCTAGTACAAGACATGTGTGGGACATGCATCGGCCTCGAGAC-GTA
1 -GA--GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT--ATTCTG-A
* ***
195434 -AGCCAGTGTAAGACATGTCGGGGACATGCATCGG-CTACGAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTA--TTCTGA
* *
195479 TAGTCAGTGTAAGACCATGTCTGGGACATGACATCG
1 GAGCCAGTGTAAGA-CATGTCTGGGACATG-CATCG
195515 ATACCTTACC
Statistics
Matches: 139, Mismatches: 21, Indels: 30
0.73 0.11 0.16
Matches are distributed among these distances:
43 1 0.01
45 9 0.06
46 62 0.45
47 42 0.30
48 22 0.16
49 1 0.01
50 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTATTCTGA
Found at i:202516 original size:53 final size:54
Alignment explanation
Indices: 202448--202654 Score: 209
Period size: 53 Copynumber: 3.8 Consensus size: 54
202438 TTCCTTTTTA
* * *
202448 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
202501 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
*** * * * * * *
202555 TGGGTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
202610 AACTTACCAATGTCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
202655 AAACCCTAAT
Statistics
Matches: 121, Mismatches: 31, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 46 0.38
54 36 0.30
55 39 0.32
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:203313 original size:92 final size:92
Alignment explanation
Indices: 203156--203340 Score: 370
Period size: 92 Copynumber: 2.0 Consensus size: 92
203146 TATTTATGAC
203156 CATTAGGTATTTTTATCGAGTATGTCGTTTTACTTGTTTTCGCTTAAAATCGCTTAGCTCAAGTC
1 CATTAGGTATTTTTATCGAGTATGTCGTTTTACTTGTTTTCGCTTAAAATCGCTTAGCTCAAGTC
203221 GTTTAACATAATTTTAAGCTTCATATT
66 GTTTAACATAATTTTAAGCTTCATATT
203248 CATTAGGTATTTTTATCGAGTATGTCGTTTTACTTGTTTTCGCTTAAAATCGCTTAGCTCAAGTC
1 CATTAGGTATTTTTATCGAGTATGTCGTTTTACTTGTTTTCGCTTAAAATCGCTTAGCTCAAGTC
203313 GTTTAACATAATTTTAAGCTTCATATT
66 GTTTAACATAATTTTAAGCTTCATATT
203340 C
1 C
203341 TACCATAAAA
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 93 1.00
ACGTcount: A:0.25, C:0.16, G:0.14, T:0.45
Consensus pattern (92 bp):
CATTAGGTATTTTTATCGAGTATGTCGTTTTACTTGTTTTCGCTTAAAATCGCTTAGCTCAAGTC
GTTTAACATAATTTTAAGCTTCATATT
Found at i:205735 original size:46 final size:46
Alignment explanation
Indices: 205582--205757 Score: 153
Period size: 46 Copynumber: 3.8 Consensus size: 46
205572 ATTTGTGTGT
* * * * **
205582 GAGCTAGTGTAAGAGATGTTTGGGACATACATCGGCCAT-ATTC-TGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TGAGACGT-A
* *
205628 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACG-A
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTGAGACGTA
* * * *
205676 GGGCTAGTATAAGACATGTTTGGGACATGCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-GAGACGTA
*
205723 -AGCCAGTGTAAGACATGTCCGGGACATGCATCGGC
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGC
205758 TACAAGATGA
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
45 1 0.01
46 56 0.54
47 26 0.25
48 19 0.18
49 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTGAGACGTA
Found at i:206122 original size:15 final size:15
Alignment explanation
Indices: 206102--206155 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
206092 GTTGTTGTAT
206102 ACTTACTTATATGCA
1 ACTTACTTATATGCA
* **
206117 ACTTACTAAGCTGCTA
1 ACTTACTTATATGC-A
*
206133 TGCTTACTTATATGCA
1 -ACTTACTTATATGCA
206149 ACTTACT
1 ACTTACT
206156 AAGCTGCTAT
Statistics
Matches: 29, Mismatches: 8, Indels: 4
0.71 0.20 0.10
Matches are distributed among these distances:
15 17 0.59
16 2 0.07
17 10 0.34
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (15 bp):
ACTTACTTATATGCA
Found at i:206139 original size:32 final size:32
Alignment explanation
Indices: 206103--206172 Score: 140
Period size: 32 Copynumber: 2.2 Consensus size: 32
206093 TTGTTGTATA
206103 CTTACTTATATGCAACTTACTAAGCTGCTATG
1 CTTACTTATATGCAACTTACTAAGCTGCTATG
206135 CTTACTTATATGCAACTTACTAAGCTGCTATG
1 CTTACTTATATGCAACTTACTAAGCTGCTATG
206167 CTTACT
1 CTTACT
206173 CCCTTCTCTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (32 bp):
CTTACTTATATGCAACTTACTAAGCTGCTATG
Found at i:206140 original size:17 final size:17
Alignment explanation
Indices: 206118--206172 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 17
206108 TTATATGCAA
206118 CTTACTAAGCTGCTATG
1 CTTACTAAGCTGCTATG
* ** *
206135 CTTACTTATATGC-A-A
1 CTTACTAAGCTGCTATG
206150 CTTACTAAGCTGCTATG
1 CTTACTAAGCTGCTATG
206167 CTTACT
1 CTTACT
206173 CCCTTCTCTT
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
15 10 0.36
16 2 0.07
17 16 0.57
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (17 bp):
CTTACTAAGCTGCTATG
Found at i:215369 original size:35 final size:35
Alignment explanation
Indices: 215320--215422 Score: 143
Period size: 35 Copynumber: 2.9 Consensus size: 35
215310 CTCTATTTGG
215320 CGTGTTTCGATTGGACTAGCTCTTATGAGCATTGA
1 CGTGTTTCGATTGGACTAGCTCTTATGAGCATTGA
* * *
215355 CGTGTTTCGGTTGGACTAGCTCTTATGAGCGTTGG
1 CGTGTTTCGATTGGACTAGCTCTTATGAGCATTGA
** * *
215390 CGCATTTCAATTGGACTAGCTCTTGTGAGCATT
1 CGTGTTTCGATTGGACTAGCTCTTATGAGCATT
215423 TGGTGTATTT
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 59 1.00
ACGTcount: A:0.17, C:0.18, G:0.27, T:0.37
Consensus pattern (35 bp):
CGTGTTTCGATTGGACTAGCTCTTATGAGCATTGA
Found at i:216120 original size:18 final size:18
Alignment explanation
Indices: 216097--216131 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
216087 AGTTTATATG
216097 AGCTTACTAAGCATTCAT
1 AGCTTACTAAGCATTCAT
216115 AGCTTACTAAGCATTCA
1 AGCTTACTAAGCATTCA
216132 CATAATTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.31
Consensus pattern (18 bp):
AGCTTACTAAGCATTCAT
Found at i:219249 original size:20 final size:20
Alignment explanation
Indices: 219190--219375 Score: 121
Period size: 20 Copynumber: 9.3 Consensus size: 20
219180 AATTATTAAA
219190 TGTTTGCACATTCGTGCCCC
1 TGTTTGCACATTCGTGCCCC
* *
219210 TG-TT-CATACTTCGATACCCC
1 TGTTTGCACA-TTCG-TGCCCC
219230 TGTTTGCACATTCGTGCCCC
1 TGTTTGCACATTCGTGCCCC
* * * * *
219250 TCTTCGTAC-TTTGCTACCCC
1 TGTTTGCACATTCG-TGCCCC
* *
219270 TGTTTGCACATTCGAGCCCT
1 TGTTTGCACATTCGTGCCCC
* **
219290 TGTTTGTAC-TTCGGTATCCC
1 TGTTTGCACATTC-GTGCCCC
*
219310 TATTTGCACATTCGTGCCCC
1 TGTTTGCACATTCGTGCCCC
* * *
219330 TTTTTGTAC-TTCGGTACCCC
1 TGTTTGCACATTC-GTGCCCC
* *
219350 TATTTGCACATACGTGCCCC
1 TGTTTGCACATTCGTGCCCC
*
219370 TATTTG
1 TGTTTG
219376 TACTTCAGTA
Statistics
Matches: 124, Mismatches: 32, Indels: 20
0.70 0.18 0.11
Matches are distributed among these distances:
18 3 0.02
19 15 0.12
20 89 0.72
21 14 0.11
22 3 0.02
ACGTcount: A:0.13, C:0.32, G:0.16, T:0.38
Consensus pattern (20 bp):
TGTTTGCACATTCGTGCCCC
Found at i:219389 original size:20 final size:20
Alignment explanation
Indices: 219292--219391 Score: 87
Period size: 20 Copynumber: 5.0 Consensus size: 20
219282 CGAGCCCTTG
* *
219292 TTTGTACTTCGGTATCCCTA
1 TTTGTACTTCAGTACCCCTA
* * *
219312 TTTGCACATTC-GTGCCCCTT
1 TTTGTAC-TTCAGTACCCCTA
*
219332 TTTGTACTTCGGTACCCCTA
1 TTTGTACTTCAGTACCCCTA
* * *
219352 TTTGCACAT-ACGTGCCCCTA
1 TTTGTACTTCA-GTACCCCTA
219372 TTTGTACTTCAGTACCCCTA
1 TTTGTACTTCAGTACCCCTA
219392 AAATATATGA
Statistics
Matches: 62, Mismatches: 14, Indels: 8
0.74 0.17 0.10
Matches are distributed among these distances:
19 3 0.05
20 55 0.89
21 4 0.06
ACGTcount: A:0.16, C:0.31, G:0.14, T:0.39
Consensus pattern (20 bp):
TTTGTACTTCAGTACCCCTA
Found at i:219391 original size:40 final size:40
Alignment explanation
Indices: 219192--219391 Score: 256
Period size: 40 Copynumber: 5.0 Consensus size: 40
219182 TTATTAAATG
** * *
219192 TTTGCACATTCGTGCCCCTGTTCATACTTCGATACCCCTG
1 TTTGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCCTA
* * * * *
219232 TTTGCACATTCGTGCCCCTCTTCGTACTTTGCTACCCCTG
1 TTTGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCCTA
* * *
219272 TTTGCACATTCGAGCCCTTGTTTGTACTTCGGTATCCCTA
1 TTTGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCCTA
*
219312 TTTGCACATTCGTGCCCCTTTTTGTACTTCGGTACCCCTA
1 TTTGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCCTA
* * *
219352 TTTGCACATACGTGCCCCTATTTGTACTTCAGTACCCCTA
1 TTTGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCCTA
219392 AAATATATGA
Statistics
Matches: 141, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 141 1.00
ACGTcount: A:0.14, C:0.33, G:0.15, T:0.38
Consensus pattern (40 bp):
TTTGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCCTA
Found at i:221229 original size:27 final size:26
Alignment explanation
Indices: 221212--221281 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 26
221202 ATATTAAGTC
221212 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
**
221239 CGCACACTTTGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
221267 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
221282 GTACAATTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.54
28 18 0.46
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.29
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:221275 original size:28 final size:28
Alignment explanation
Indices: 221212--221309 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
221202 ATATTAAGTC
*
221212 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
221239 CGCACACTTTGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
221267 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
221296 CGCACACTTAGTGC
1 CGCACACTTAGTGC
221310 CAATCTCATG
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 21 0.34
28 22 0.35
29 19 0.31
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:225426 original size:40 final size:40
Alignment explanation
Indices: 225268--225414 Score: 186
Period size: 40 Copynumber: 3.7 Consensus size: 40
225258 ACTACAGATA
* * * *
225268 TGTGCGATTCGATATAACTTCGACTATATATGGCACTTAG
1 TGTGCGATTCGACATAGCTTTGGCTATATATGGCACTTAG
* * *
225308 AGTGTGATTCAACATAGCTTTGGCTATATATGGCACTTAG
1 TGTGCGATTCGACATAGCTTTGGCTATATATGGCACTTAG
* * *
225348 TATGTGATTCGACATAGCTTTAGCTATATATGGCACTTAG
1 TGTGCGATTCGACATAGCTTTGGCTATATATGGCACTTAG
* *
225388 TGTGCGATTTGAGATAGCTTTGGCTAT
1 TGTGCGATTCGACATAGCTTTGGCTAT
225415 GTACGACACT
Statistics
Matches: 91, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 91 1.00
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (40 bp):
TGTGCGATTCGACATAGCTTTGGCTATATATGGCACTTAG
Found at i:231371 original size:46 final size:46
Alignment explanation
Indices: 231321--231496 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
231311 TGGTTGAGCA
231321 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
231367 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
**
231412 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
231460 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
231497 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:231477 original size:93 final size:93
Alignment explanation
Indices: 231318--231489 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
231308 GGATGGTTGA
***
231318 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
231383 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
231411 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
231476 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
231490 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:235211 original size:46 final size:46
Alignment explanation
Indices: 235158--235248 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
235148 TATATATACA
*
235158 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTTGGCTTTACCACATATC
* * * *
235204 CATCTCATACCCGTTTCGCATTAGCCATTTGGCTTTACCACATAT
1 CATCTCATACACATCTCACATTAGCCATTTGGCTTTACCACATAT
235249 ATACACTTCC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTTGGCTTTACCACATATC
Found at i:235291 original size:22 final size:22
Alignment explanation
Indices: 235265--235340 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
235255 TTCCACGTTC
235265 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
235287 ATCACATATATG-CATGT-T-CACATT
1 ATCACAT-T-GGCCAT-TCTGC-C-TT
*
235311 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTGCCTT
235334 ATCACAT
1 ATCACAT
235341 ATATGCATGT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:235296 original size:47 final size:47
Alignment explanation
Indices: 235262--236370 Score: 2047
Period size: 47 Copynumber: 23.6 Consensus size: 47
235252 CACTTCCACG
* * *
235262 TTCATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
* *
235309 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
*
235356 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
*
235403 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
235450 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
* *
235497 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
* *
235544 TTCATCACGTTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
235591 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
235638 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
235685 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
235732 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
235779 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
235826 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
235873 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
235920 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
235967 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
236014 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
236061 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
236108 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
* *
236155 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
* *
236202 TTCATCACGTTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
*
236249 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
*
236296 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
* *
236343 TTCATCACATTGGCCATTTGGCCTTATC
1 TTCATCACATTGGCCATTCGGCATTATC
236371 TCATATATAT
Statistics
Matches: 1047, Mismatches: 15, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 1047 1.00
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.33
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
Found at i:235433 original size:22 final size:22
Alignment explanation
Indices: 235312--235433 Score: 65
Period size: 22 Copynumber: 5.3 Consensus size: 22
235302 GTTCACATTC
235312 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
235334 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
235358 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* *
235381 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
235405 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
235428 ATCACA
1 ATCACA
235434 CATATGCATG
Statistics
Matches: 74, Mismatches: 10, Indels: 32
0.64 0.09 0.28
Matches are distributed among these distances:
22 22 0.30
23 18 0.24
24 18 0.24
25 16 0.22
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:236279 original size:22 final size:22
Alignment explanation
Indices: 236252--236326 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
236242 GTTCACATTC
236252 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
236274 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
236298 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
236321 ATCACA
1 ATCACA
236327 CATATGCATG
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.30
23 11 0.28
24 11 0.28
25 6 0.15
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:242451 original size:12 final size:12
Alignment explanation
Indices: 242432--242461 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
242422 ACTACATAAC
242432 TATATATATACA
1 TATATATATACA
*
242444 TGTATATATACA
1 TATATATATACA
242456 TATATA
1 TATATA
242462 AAAAAACAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.47, C:0.07, G:0.03, T:0.43
Consensus pattern (12 bp):
TATATATATACA
Found at i:242541 original size:16 final size:18
Alignment explanation
Indices: 242508--242544 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
242498 ATAATATATC
*
242508 TATATATATACTAGAAAA
1 TATATATATACTAAAAAA
242526 TATA-ATATA-TAAAAAA
1 TATATATATACTAAAAAA
242542 TAT
1 TAT
242545 GCATATAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 9 0.50
17 5 0.28
18 4 0.22
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (18 bp):
TATATATATACTAAAAAA
Found at i:246943 original size:26 final size:26
Alignment explanation
Indices: 246914--247019 Score: 185
Period size: 26 Copynumber: 4.1 Consensus size: 26
246904 TAAAATTCCC
*
246914 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
246940 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
246966 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
246992 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
247018 AT
1 AT
247020 TAGTTTGTAT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:248602 original size:40 final size:42
Alignment explanation
Indices: 248533--248614 Score: 150
Period size: 40 Copynumber: 2.0 Consensus size: 42
248523 TGTCAGACAT
248533 TTCCCTACAAACTCCGTTACTTCTCGTTTAAGTCCAGGCCAC
1 TTCCCTACAAACTCCGTTACTTCTCGTTTAAGTCCAGGCCAC
248575 TTCCCTACAAACT-C-TTACTTCTCGTTTAAGTCCAGGCCAC
1 TTCCCTACAAACTCCGTTACTTCTCGTTTAAGTCCAGGCCAC
248615 CAGTACAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
40 26 0.65
41 1 0.03
42 13 0.32
ACGTcount: A:0.22, C:0.35, G:0.11, T:0.32
Consensus pattern (42 bp):
TTCCCTACAAACTCCGTTACTTCTCGTTTAAGTCCAGGCCAC
Found at i:259000 original size:26 final size:27
Alignment explanation
Indices: 258945--259000 Score: 62
Period size: 26 Copynumber: 2.1 Consensus size: 27
258935 CATATTATTC
* **
258945 ATTTTAAACTTTTCCCGTATATTATTT
1 ATTTCAAACTTTTCCCGTATATTACCT
258972 ATTTCAAAC-TTTCGCC-TATATTACCT
1 ATTTCAAACTTTTC-CCGTATATTACCT
258998 ATT
1 ATT
259001 CTAAAATTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.27, C:0.20, G:0.04, T:0.50
Consensus pattern (27 bp):
ATTTCAAACTTTTCCCGTATATTACCT
Found at i:262873 original size:19 final size:19
Alignment explanation
Indices: 262846--262889 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
262836 TCTTTTTGCA
* *
262846 TTCATTCATTTGCATTACAT
1 TTCA-TCATATGCATTAAAT
262866 TTCATCATATGCATTAAAT
1 TTCATCATATGCATTAAAT
262885 TTCAT
1 TTCAT
262890 GAAAGGACCC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.30, C:0.18, G:0.05, T:0.48
Consensus pattern (19 bp):
TTCATCATATGCATTAAAT
Found at i:270446 original size:47 final size:47
Alignment explanation
Indices: 270294--270470 Score: 177
Period size: 47 Copynumber: 3.8 Consensus size: 47
270284 TGTAACCCGC
* * * *
270294 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGG--GTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTCACAT
*
270340 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTCACAT
* * **
270390 -C-TCA-CGAACTTTGACTCAACTCAACGAGTTCGGACATTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTCACAT
*
270434 CCATAAGTGAACTCGGACTCAACTCAACGAGGTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
270471 TGTTCAACCA
Statistics
Matches: 106, Mismatches: 15, Indels: 19
0.76 0.11 0.14
Matches are distributed among these distances:
43 3 0.03
44 5 0.05
45 1 0.01
46 36 0.34
47 53 0.50
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTCACAT
Found at i:270926 original size:30 final size:30
Alignment explanation
Indices: 270892--270951 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
270882 CCTTAATACG
*
270892 AACTTTGGCAAAATTATCA-TTTTTCCCCTA
1 AACTTTGGCAAAATTA-CACTTTTGCCCCTA
* *
270922 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
270952 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 2 0.08
30 24 0.92
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:274006 original size:44 final size:45
Alignment explanation
Indices: 273942--274304 Score: 114
Period size: 44 Copynumber: 7.9 Consensus size: 45
273932 ATCGAAGAAT
* * * **
273942 AGCAAACCTTATCCCCCTGAAGTTGCAGTGGGGCAGGTTAAAGTT
1 AGCAAATCTTATCTCTCTGAAGTTGCAGTGGGGCAGGTTAAAGAC
* * * * ** *
273987 A-CAAGTCTTATCTCTCTGAAATTGTAGT-GGGAAGACTGAAGAC
1 AGCAAATCTTATCTCTCTGAAGTTGCAGTGGGGCAGGTTAAAGAC
* **
274030 AGCAAATCTTATTTCTCTGAAGTTGCAGTGGAACAGGTTAAAGCTAC
1 AGCAAATCTTATCTCTCTGAAGTTGCAGTGGGGCAGGTTAAAG--AC
* * * * *
274077 GAGTTACAAGTCCTATAC-CTCTGAAGTTGCAGTGGGTC-GGATCAAATCTACC
1 -AG---CAAATCTTAT-CTCTCTGAAGTTGCAGTGGGGCAGG-TTAAA--GA-C
* * * *
274129 ATGGCAAATCTTA-CTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCC
1 A--GCAAATCTTATCTCTCTGAAGTTGCAGTGGGGCAGGTTAAAGAC
** * * * * * *
274175 A-TTAA-CATTATCTCCCTGAAGATGCAGTAGAGCAGTTTGAAATTAC
1 AGCAAATC-TTATCTCTCTGAAGTTGCAGTGGGGCAGGTT-AAA-GAC
* * * *** ** * *
274221 --CAAGTCTTATCTCCCTAAAGTTGCAGTGGAATAGACTGAAGAT
1 AGCAAATCTTATCTCTCTGAAGTTGCAGTGGGGCAGGTTAAAGAC
* * *
274264 AGCAAATCTTATCTCTCTAAAGTTGCAGTAGGGCAGATTAA
1 AGCAAATCTTATCTCTCTGAAGTTGCAGTGGGGCAGGTTAA
274305 GGCTATAAAT
Statistics
Matches: 228, Mismatches: 66, Indels: 48
0.67 0.19 0.14
Matches are distributed among these distances:
42 1 0.00
43 16 0.07
44 70 0.31
45 67 0.29
46 4 0.02
47 2 0.01
48 3 0.01
49 21 0.09
50 10 0.04
51 32 0.14
52 1 0.00
53 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (45 bp):
AGCAAATCTTATCTCTCTGAAGTTGCAGTGGGGCAGGTTAAAGAC
Found at i:274246 original size:45 final size:45
Alignment explanation
Indices: 274133--274300 Score: 123
Period size: 45 Copynumber: 3.8 Consensus size: 45
274123 TCTACCATGG
* * * *
274133 CAAATCTTA-CTCTCTGAAGTTGCAGTAGAGCAGA-TTAA-A-GC
1 CAAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGACTGAAGATAC
* * **
274174 CATTAA-CATTATCTCCCTGAAGATGCAGTAGAGCAGTTTGAA-ATTAC
1 CA--AATC-TTATCTCCCTAAAGTTGCAGTAGAGCAGACTGAAGA-TAC
* * ** *
274221 CAAGTCTTATCTCCCTAAAGTTGCAGTGGAATAGACTGAAGATAG
1 CAAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGACTGAAGATAC
* *
274266 CAAATCTTATCTCTCTAAAGTTGCAGTAGGGCAGA
1 CAAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGA
274301 TTAAGGCTAT
Statistics
Matches: 98, Mismatches: 20, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
41 2 0.02
42 1 0.01
43 5 0.05
44 22 0.22
45 63 0.64
46 2 0.02
47 3 0.03
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (45 bp):
CAAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGACTGAAGATAC
Found at i:274415 original size:227 final size:230
Alignment explanation
Indices: 273944--274458 Score: 616
Period size: 227 Copynumber: 2.2 Consensus size: 230
273934 CGAAGAATAG
* * * * *
273944 CAAACCTTATCCCCCTGAAGTTGCAGTGGGGCAGGTT-AAAGTTA-CAAGTCTTATCTCTCTGAA
1 CAAACCTTATCTCCCTGAAGATGCAGTAGAGCAGGTTGAAA-TTACCAAGTCTTATCTCCCTGAA
* * * * *
274007 ATTGTAGTGGGAAGACTGAAGACAGCAAATCTTATTTCTCTGAAGTTGCAGTGGAACAGGTTAAA
65 ATTGCAGTGGAAAGACTGAAGACAGCAAATCTTATCTCTCTAAAGTTGCAGTGGAACAGATTAAA
* * * * *
274072 GCTACGAGTTACAAGTCCTATACCTCTGAAGTTGCAGTGGGTCGGATCAAATCTACCATGGCAAA
130 GCTA--AG-TACAAGTCCCATACCTCTAAAGTTGCAGTAGGTCGAATCAAATCTACCATGGAAAA
* * *
274137 TCTTACTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCCA
192 TATTACTCCCTGAAATTGCAGTAGAGCAGATTAAAGCCA
** * *
274176 TTAACATTATCTCCCTGAAGATGCAGTAGAGCAGTTTGAAATTACCAAGTCTTATCTCCCT-AAA
1 CAAACCTTATCTCCCTGAAGATGCAGTAGAGCAGGTTGAAATTACCAAGTCTTATCTCCCTGAAA
* *
274240 GTTGCAGTGGAATAGACTGAAGATAGCAAATCTTATCTCTCTAAAGTTGCAGTAGG-GCAGATTA
66 -TTGCAGTGGAA-AGACTGAAGACAGCAAATCTTATCTCTCTAAAGTTGCAGT-GGAACAGATTA
* * *
274304 AGGCT-A-TA-AA-TCCCATACCTCTAAAGTTGCAGTAGGTCGAATCGAGT-TACCATGGAAAAT
128 AAGCTAAGTACAAGTCCCATACCTCTAAAGTTGCAGTAGGTCGAATCAAATCTACCATGGAAAAT
* * * *
274364 ATTATCTCCCTGAAATTGTAGTGGAGCAGATTGAAGTCA
193 ATTA-CTCCCTGAAATTGCAGTAGAGCAGATTAAAGCCA
274403 CAAACCTTATCTCCCTGAAGATGCAGTAGAGCAGGTTGAAATTACCAAGTCTTATC
1 CAAACCTTATCTCCCTGAAGATGCAGTAGAGCAGGTTGAAATTACCAAGTCTTATC
274459 CCTTTGAAGT
Statistics
Matches: 242, Mismatches: 35, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
226 15 0.06
227 111 0.46
228 2 0.01
229 2 0.01
231 1 0.00
232 35 0.14
233 27 0.11
234 47 0.19
235 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (230 bp):
CAAACCTTATCTCCCTGAAGATGCAGTAGAGCAGGTTGAAATTACCAAGTCTTATCTCCCTGAAA
TTGCAGTGGAAAGACTGAAGACAGCAAATCTTATCTCTCTAAAGTTGCAGTGGAACAGATTAAAG
CTAAGTACAAGTCCCATACCTCTAAAGTTGCAGTAGGTCGAATCAAATCTACCATGGAAAATATT
ACTCCCTGAAATTGCAGTAGAGCAGATTAAAGCCA
Found at i:275831 original size:19 final size:19
Alignment explanation
Indices: 275784--275823 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
275774 TATTTTGTTA
275784 TTTATTTTTATTTCATCTT
1 TTTATTTTTATTTCATCTT
275803 TTTATTTTTATTTCATCTT
1 TTTATTTTTATTTCATCTT
275822 TT
1 TT
275824 ACTTTTTACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTATTTTTATTTCATCTT
Found at i:275978 original size:62 final size:62
Alignment explanation
Indices: 275881--276002 Score: 217
Period size: 62 Copynumber: 2.0 Consensus size: 62
275871 TTATTTCCTC
275881 CCTAAACGTCGCGGGCACGACAACCACCCAGACACTAATCTGGTCAAGAAACAAACAATTCT
1 CCTAAACGTCGCGGGCACGACAACCACCCAGACACTAATCTGGTCAAGAAACAAACAATTCT
* **
275943 CCTAAATGTCGCGGGCACGACAACTGCCCAGACACTAATCTGGTCAAGAAACAAACAATT
1 CCTAAACGTCGCGGGCACGACAACCACCCAGACACTAATCTGGTCAAGAAACAAACAATT
276003 TTCAGTAATT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.37, C:0.30, G:0.17, T:0.16
Consensus pattern (62 bp):
CCTAAACGTCGCGGGCACGACAACCACCCAGACACTAATCTGGTCAAGAAACAAACAATTCT
Found at i:280133 original size:16 final size:15
Alignment explanation
Indices: 280108--280155 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 15
280098 CTATTTTAAG
280108 TTTATTTTAATTTTA
1 TTTATTTTAATTTTA
280123 TTTATTTTTAATTATTA
1 TTTA-TTTTAATT-TTA
280140 -TTATTTTAGATTTTA
1 TTTATTTTA-ATTTTA
280155 T
1 T
280156 ATTAATTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
15 12 0.41
16 14 0.48
17 3 0.10
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (15 bp):
TTTATTTTAATTTTA
Found at i:284907 original size:22 final size:24
Alignment explanation
Indices: 284869--284913 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
284859 CACTATGTTT
284869 TTTTCTTATTGTG-TTTTCAACAC
1 TTTTCTTATTGTGTTTTTCAACAC
284892 TTTT-TTATT-TGATTTTTCAACA
1 TTTTCTTATTGTG-TTTTTCAACA
284914 ATATTGCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 2 0.10
22 5 0.25
23 13 0.65
ACGTcount: A:0.20, C:0.13, G:0.07, T:0.60
Consensus pattern (24 bp):
TTTTCTTATTGTGTTTTTCAACAC
Found at i:287413 original size:43 final size:43
Alignment explanation
Indices: 287339--287482 Score: 182
Period size: 43 Copynumber: 3.4 Consensus size: 43
287329 AGACTAAGAC
* * *
287339 CTTTAGCGGCGCTTTAGTG-GAAGCGCCGCTAAAGATCAGGGT
1 CTTTAGCGGCGTTTTTGCGAGAAGCGCCGCTAAAGATCAGGGT
* * *
287381 CTTTAGCAGCGTTTTTGCTAGAAGCGCTGCTAAAGATCAGGGT
1 CTTTAGCGGCGTTTTTGCGAGAAGCGCCGCTAAAGATCAGGGT
* * * *
287424 CTTTAGTGGCATTTTTGCGACAAGCGCCGCTAAAGATTAGGGT
1 CTTTAGCGGCGTTTTTGCGAGAAGCGCCGCTAAAGATCAGGGT
*
287467 CTTTAGCGGCGCTTTT
1 CTTTAGCGGCGTTTTT
287483 CCTACAAACG
Statistics
Matches: 85, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
42 14 0.16
43 71 0.84
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (43 bp):
CTTTAGCGGCGTTTTTGCGAGAAGCGCCGCTAAAGATCAGGGT
Found at i:287495 original size:43 final size:43
Alignment explanation
Indices: 287274--287502 Score: 176
Period size: 43 Copynumber: 5.3 Consensus size: 43
287264 TTTTAGAAAT
* * * *
287274 AAACGCCGCTAAAGGTGT-TGGTCTATAGCGGCGCTTCTAGC-AC
1 AAACGCCGCTAAAGAT-TAGGGTCTTTAGCGGCGCTT-TTGCTAC
* * * ** * **
287317 AAACGCCGCTGAAGACTAAGACCTTTAGCGGCGCTTTAG-TGG
1 AAACGCCGCTAAAGATTAGGGTCTTTAGCGGCGCTTTTGCTAC
* * * * *
287359 AAGCGCCGCTAAAGATCAGGGTCTTTAGCAGCGTTTTTGCTAG
1 AAACGCCGCTAAAGATTAGGGTCTTTAGCGGCGCTTTTGCTAC
* * * * ** *
287402 AAGCGCTGCTAAAGATCAGGGTCTTTAGTGGCATTTTTGCGAC
1 AAACGCCGCTAAAGATTAGGGTCTTTAGCGGCGCTTTTGCTAC
* *
287445 AAGCGCCGCTAAAGATTAGGGTCTTTAGCGGCGCTTTTCCTAC
1 AAACGCCGCTAAAGATTAGGGTCTTTAGCGGCGCTTTTGCTAC
*
287488 AAACGCCGCAAAAGA
1 AAACGCCGCTAAAGA
287503 CCCTGATCTC
Statistics
Matches: 148, Mismatches: 35, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
42 33 0.22
43 115 0.78
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTAAAGATTAGGGTCTTTAGCGGCGCTTTTGCTAC
Found at i:288899 original size:16 final size:16
Alignment explanation
Indices: 288857--288904 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
288847 AAATATAATT
*
288857 TATTAAATAAAA-ATGA
1 TATT-AATAAAATATTA
288873 TATTAATTAAAATATTA
1 TATTAA-TAAAATATTA
*
288890 TTTTAATAAAATATT
1 TATTAATAAAATATT
288905 TAAATTTTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 2 0.07
16 18 0.64
17 8 0.29
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (16 bp):
TATTAATAAAATATTA
Found at i:301697 original size:39 final size:39
Alignment explanation
Indices: 301612--301688 Score: 129
Period size: 38 Copynumber: 2.0 Consensus size: 39
301602 TTCCAAAAAC
*
301612 AAAAAAAAACTTCATATTTAAATTATACCAATTCTTTCCA
1 AAAAAAAAAC-TCATATTTAAATTATACCAATCCTTTCCA
301652 AAAAAAAAA-TCATATTTAAATTATACCAATCCTTTCC
1 AAAAAAAAACTCATATTTAAATTATACCAATCCTTTCC
301689 CTATAAAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
38 27 0.75
40 9 0.25
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.34
Consensus pattern (39 bp):
AAAAAAAAACTCATATTTAAATTATACCAATCCTTTCCA
Found at i:303443 original size:41 final size:41
Alignment explanation
Indices: 303383--303483 Score: 112
Period size: 41 Copynumber: 2.4 Consensus size: 41
303373 GAAAAGAGGT
* **
303383 AATAAATACAACTCATCACAAAATTGGTTGAGATAATAGAC
1 AATAAATACGACTCATCACAAAATCAGTTGAGATAATAGAC
* * * * *
303424 AATAAATATGACTCGTCACAATATCAGTTGAGGTAATAGGC
1 AATAAATACGACTCATCACAAAATCAGTTGAGATAATAGAC
*
303465 AACAAATACGACTGCATCA
1 AATAAATACGACT-CATCA
303484 TACTGCAGCC
Statistics
Matches: 48, Mismatches: 11, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
41 44 0.92
42 4 0.08
ACGTcount: A:0.45, C:0.17, G:0.15, T:0.24
Consensus pattern (41 bp):
AATAAATACGACTCATCACAAAATCAGTTGAGATAATAGAC
Found at i:319113 original size:70 final size:71
Alignment explanation
Indices: 319026--319165 Score: 255
Period size: 70 Copynumber: 2.0 Consensus size: 71
319016 TAATCATCAA
*
319026 GTGGGATTACCTTAATGGTCACTTTGCCCGTCCACTCGCCAAGTTTGAGTT-CACCCCTTTTGCC
1 GTGGGATTACCTTAATGGTCACTTTGCCCATCCACTCGCCAAGTTTGAGTTCCACCCCTTTTGCC
319090 ACACCT
66 ACACCT
*
319096 GTGGGATTACCTTAATGGTCGCTTTGCCCATCCACTCGCCAAGTTTGAGTTCCACCCCTTTTGCC
1 GTGGGATTACCTTAATGGTCACTTTGCCCATCCACTCGCCAAGTTTGAGTTCCACCCCTTTTGCC
319161 ACACC
66 ACACC
319166 CGTTATGGGA
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
70 49 0.73
71 18 0.27
ACGTcount: A:0.17, C:0.34, G:0.19, T:0.31
Consensus pattern (71 bp):
GTGGGATTACCTTAATGGTCACTTTGCCCATCCACTCGCCAAGTTTGAGTTCCACCCCTTTTGCC
ACACCT
Found at i:323524 original size:51 final size:51
Alignment explanation
Indices: 323469--323604 Score: 191
Period size: 51 Copynumber: 2.7 Consensus size: 51
323459 TGGAAACATG
*
323469 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGTA
1 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATATGTA
* * ** * *
323520 ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTA
1 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATATGTA
* *
323571 ATCTTAGAAGATATGATTTTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATTTTATAATCTTAGAGAT
323605 TTGATTGTAG
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 71 1.00
ACGTcount: A:0.39, C:0.06, G:0.12, T:0.43
Consensus pattern (51 bp):
ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATATGTA
Found at i:323574 original size:19 final size:19
Alignment explanation
Indices: 323501--323578 Score: 62
Period size: 19 Copynumber: 4.4 Consensus size: 19
323491 AATCTTAGAG
*
323501 ATCTTAGATATGATATGTA
1 ATCTTAGATAAGATATGTA
323520 ATCTT--ATAAGATAT-T-
1 ATCTTAGATAAGATATGTA
* **
323535 AT-TT-TATAAGAT-TACA
1 ATCTTAGATAAGATATGTA
323551 TATCTTAGATAAGATATGTA
1 -ATCTTAGATAAGATATGTA
323571 ATCTTAGA
1 ATCTTAGA
323579 AGATATGATT
Statistics
Matches: 47, Mismatches: 5, Indels: 14
0.71 0.08 0.21
Matches are distributed among these distances:
14 3 0.06
15 9 0.19
16 1 0.02
17 10 0.21
18 2 0.04
19 20 0.43
20 2 0.04
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.42
Consensus pattern (19 bp):
ATCTTAGATAAGATATGTA
Found at i:326333 original size:30 final size:30
Alignment explanation
Indices: 326299--326359 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
326289 TCCTTAACTC
326299 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
326329 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
326359 A
1 A
326360 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:328455 original size:34 final size:34
Alignment explanation
Indices: 328409--328476 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
328399 ACTCTACCTC
*
328409 TTCGAGTTTAACTGTACCTATGCGTTAAAAATAA
1 TTCGAGTCTAACTGTACCTATGCGTTAAAAATAA
328443 TTCGAGTCTAACTGTACCTATGCGTTAAAAATAA
1 TTCGAGTCTAACTGTACCTATGCGTTAAAAATAA
328477 ACTCGTTAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (34 bp):
TTCGAGTCTAACTGTACCTATGCGTTAAAAATAA
Found at i:330729 original size:10 final size:8
Alignment explanation
Indices: 330705--330731 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
330695 ATCATCCATT
330705 TCAATATA
1 TCAATATA
330713 TCAATATA
1 TCAATATA
330721 TCAATATA
1 TCAATATA
330729 TCA
1 TCA
330732 TGTGCCATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (8 bp):
TCAATATA
Found at i:331017 original size:21 final size:21
Alignment explanation
Indices: 330993--331085 Score: 89
Period size: 21 Copynumber: 4.4 Consensus size: 21
330983 ACAAAAGCAT
*
330993 GTAAGAGCTGAATAGCAGCTC
1 GTAAGAGCTGAATAGAAGCTC
* *
331014 GTAAGAACTGAATAGAAACTC
1 GTAAGAGCTGAATAGAAGCTC
* **
331035 ATAAGATTTGAACT-GAAGCTC
1 GTAAGAGCTGAA-TAGAAGCTC
* *
331056 CTAAGAGCTGAACAGAAGCTC
1 GTAAGAGCTGAATAGAAGCTC
*
331077 GAAAGAGCT
1 GTAAGAGCT
331086 AAACAAAAAG
Statistics
Matches: 57, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
21 56 0.98
22 1 0.02
ACGTcount: A:0.40, C:0.17, G:0.24, T:0.19
Consensus pattern (21 bp):
GTAAGAGCTGAATAGAAGCTC
Found at i:331090 original size:21 final size:21
Alignment explanation
Indices: 331049--331090 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
331039 GATTTGAACT
* *
331049 GAAGCTCCTAAGAGCTGAACA
1 GAAGCTCCAAAGAGCTAAACA
*
331070 GAAGCTCGAAAGAGCTAAACA
1 GAAGCTCCAAAGAGCTAAACA
331091 AAAAGTAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.43, C:0.21, G:0.24, T:0.12
Consensus pattern (21 bp):
GAAGCTCCAAAGAGCTAAACA
Found at i:331977 original size:35 final size:35
Alignment explanation
Indices: 331938--332012 Score: 141
Period size: 35 Copynumber: 2.1 Consensus size: 35
331928 ACCATATTTG
*
331938 ACTCGTAAATATTAAATAATAAAATGTACGAGCTT
1 ACTCGTAAATATTAAATAATAAAATATACGAGCTT
331973 ACTCGTAAATATTAAATAATAAAATATACGAGCTT
1 ACTCGTAAATATTAAATAATAAAATATACGAGCTT
332008 ACTCG
1 ACTCG
332013 CCGGATTTGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.45, C:0.13, G:0.11, T:0.31
Consensus pattern (35 bp):
ACTCGTAAATATTAAATAATAAAATATACGAGCTT
Found at i:335401 original size:5 final size:5
Alignment explanation
Indices: 335375--335432 Score: 62
Period size: 5 Copynumber: 10.8 Consensus size: 5
335365 ATGTGTTAAA
* *
335375 ATATAT ATATT AAATT ATTATT ATATT ATAGT ATATT ATATTAT ATATT
1 ATAT-T ATATT ATATT A-TATT ATATT ATATT ATATT ATA-T-T ATATT
335424 ATATT ATAT
1 ATATT ATAT
335433 AAATAAGTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
5 31 0.69
6 10 0.22
7 4 0.09
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (5 bp):
ATATT
Found at i:335411 original size:10 final size:9
Alignment explanation
Indices: 335376--335433 Score: 61
Period size: 8 Copynumber: 6.7 Consensus size: 9
335366 TGTGTTAAAA
335376 TATATATAT
1 TATATATAT
*
335385 TAAAT-TAT
1 TATATATAT
335393 TAT-TATAT
1 TATATATAT
335401 TATAGTATAT
1 TATA-TATAT
335411 TATAT-TA-
1 TATATATAT
335418 TATATTATAT
1 TATA-TATAT
335428 TATATA
1 TATATA
335434 AATAAGTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
7 5 0.12
8 14 0.34
9 9 0.22
10 13 0.32
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (9 bp):
TATATATAT
Found at i:335423 original size:12 final size:12
Alignment explanation
Indices: 335378--335433 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
335368 TGTTAAAATA
*
335378 TATATATTAAAT
1 TATATATTATAT
335390 TAT-TATTATATT
1 TATATATTATA-T
335402 ATAGTATATTATAT
1 -TA-TATATTATAT
335416 TATATATTATAT
1 TATATATTATAT
335428 TATATA
1 TATATA
335434 AATAAGTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 6 0.15
12 20 0.51
13 4 0.10
14 2 0.05
15 7 0.18
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (12 bp):
TATATATTATAT
Found at i:336754 original size:18 final size:19
Alignment explanation
Indices: 336731--336769 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
336721 ATATATATAG
336731 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
336749 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
336768 AT
1 AT
336770 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Done.