Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56482370
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1659275 characters in sequence are not A, C, G, or T
File 103 of 172
Found at i:34611471 original size:31 final size:31
Alignment explanation
Indices: 34611436--34612253 Score: 1618
Period size: 31 Copynumber: 26.4 Consensus size: 31
34611426 GTTTACAGTA
*
34611436 AAGGCTTCGGCCCAGAGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34611467 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34611498 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34611529 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34611560 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34611591 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34611622 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34611653 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34611684 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34611715 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34611746 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34611777 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34611808 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34611839 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34611870 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34611901 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34611932 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34611963 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34611994 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34612025 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34612056 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34612087 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34612118 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34612149 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34612180 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
*
34612211 AAGGCTTCGGCCCAGTGATATGATTTATGAA
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34612242 AAGGCTTCGGCC
1 AAGGCTTCGGCC
34612254 TAGTAACCGT
Statistics
Matches: 785, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 785 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (31 bp):
AAGGCTTCGGCCCAGTGATATGATTTATGAT
Found at i:34614590 original size:27 final size:27
Alignment explanation
Indices: 34614560--34614718 Score: 201
Period size: 27 Copynumber: 5.9 Consensus size: 27
34614550 ATTACCAAAG
* *
34614560 TACCCCCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
34614587 TACCCTCAATTTATAGAATTAGTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* **
34614614 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTATTT
*
34614641 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
34614668 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
34614695 TACCCTCAATTTACAAAATTACTA
1 TACCCTCGATTTACAGAATTACTA
34614719 AAATACCCTT
Statistics
Matches: 110, Mismatches: 22, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 110 1.00
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:34614607 original size:54 final size:54
Alignment explanation
Indices: 34614549--34614743 Score: 228
Period size: 54 Copynumber: 3.6 Consensus size: 54
34614539 CGACTTGTAA
* * ** *
34614549 AATTACCAAAGTACCCCCGATTTACAAAATTACTATTTTACCCTCAATTTATAG
1 AATTACTAAATTACCCTTGATTTACAAAATTACTGTTTTACCCTCAATTTATAG
* ** * * *
34614603 AATTAGTATTTTACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTATAG
1 AATTACTAAATTACCCTTGATTTACAAAATTACTGTTTTACCCTCAATTTATAG
** * * *
34614657 AATTACTATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCAATTTACAA
1 AATTACTAAATTACCCTTGATTTACAAAATTACTGTTTTACCCTCAATTTATAG
* *
34614711 AATTACTAAAATACCCTTGGTTTACAAAATTAC
1 AATTACTAAATTACCCTTGATTTACAAAATTAC
34614744 CAAAATACCC
Statistics
Matches: 120, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 120 1.00
ACGTcount: A:0.34, C:0.21, G:0.07, T:0.38
Consensus pattern (54 bp):
AATTACTAAATTACCCTTGATTTACAAAATTACTGTTTTACCCTCAATTTATAG
Found at i:34614726 original size:81 final size:81
Alignment explanation
Indices: 34614547--34614743 Score: 223
Period size: 81 Copynumber: 2.4 Consensus size: 81
34614537 CTCGACTTGT
* * * *
34614547 AAAATTACCAAAGTACCCCCGATTTACAAAATTACTATTTTACCCTCAATTTATAGAATTAGTAT
1 AAAATTACCAAAATACCCTCGATTTACAAAATTACTATTTTACCCTCAATTTACAGAATTACTAT
**
34614612 TTTACCCTTGATTTAC
66 TTTACCCTCAATTTAC
* **** * * ** *
34614628 AGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTGT
1 AAAATTACCAAAATACCCTCGATTTACAAAATTACTATTTTACCCTCAATTTACAGAATTACTAT
34614693 TTTACCCTCAATTTAC
66 TTTACCCTCAATTTAC
* * *
34614709 AAAATTACTAAAATACCCTTGGTTTACAAAATTAC
1 AAAATTACCAAAATACCCTCGATTTACAAAATTAC
34614744 CAAAATACCC
Statistics
Matches: 91, Mismatches: 25, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
81 91 1.00
ACGTcount: A:0.35, C:0.20, G:0.07, T:0.38
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCGATTTACAAAATTACTATTTTACCCTCAATTTACAGAATTACTAT
TTTACCCTCAATTTAC
Found at i:34614820 original size:80 final size:81
Alignment explanation
Indices: 34614709--34614913 Score: 254
Period size: 80 Copynumber: 2.5 Consensus size: 81
34614699 CTCAATTTAC
* *
34614709 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCA
1 AAAATTACTAAAATACCCCTGGTTTATAAAATTACCAAAATACCC-CGAGTCAGTAAAATTACCA
34614773 AAATACC-CTGGTTTGT
65 AAATACCACTGGTTTGT
* * * ** *
34614789 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAGTTACCAA
1 AAAATTACTAAAATACCCCTGGTTTATAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
34614854 AATACCACTGGTTTGT
66 AATACCACTGGTTTGT
* * ** *
34614870 GAAATTACCAAAATA-CCCTCAATTTCTAAAATTACCAAAATACC
1 AAAATTACTAAAATACCCCT-GGTTTATAAAATTACCAAAATACC
34614914 TCTGATTTAC
Statistics
Matches: 108, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
79 2 0.02
80 64 0.59
81 42 0.39
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTGGTTTATAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
AATACCACTGGTTTGT
Found at i:34615001 original size:27 final size:27
Alignment explanation
Indices: 34614704--34615027 Score: 187
Period size: 27 Copynumber: 12.0 Consensus size: 27
34614694 TTACCCTCAA
*
34614704 TTTACAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTTGG
*
34614731 TTTACAAAATTACCAAAATACCC-TCG
1 TTTACAAAATTACCAAAATACCCTTGG
* * *
34614757 ATCAGTAAAATTACCAAAATACCC-TGG
1 TTTA-CAAAATTACCAAAATACCCTTGG
** * * *
34614784 TTTGTAAAATTGCTAAAATACCCCTGG
1 TTTACAAAATTACCAAAATACCCTTGG
** * *
34614811 TTTGTAAAATTACCAAAATACCCCTAG
1 TTTACAAAATTACCAAAATACCCTTGG
** *
34614838 TTTGTAAAGTTACCAAAATACCAC-TGG
1 TTTACAAAATTACCAAAATACC-CTTGG
*** ***
34614865 TTTGTGAAATTACCAAAATACCCTCAA
1 TTTACAAAATTACCAAAATACCCTTGG
*
34614892 TTT-CTAAAATTACCAAAATA-CCTCTGA
1 TTTAC-AAAATTACCAAAATACCCT-TGG
* *
34614919 TTTACAAAATTA-TAGAAATACCCTTGAC
1 TTTACAAAATTACCA-AAATACCCTTG-G
* **
34614947 TTT-CTAAAAATTA-TAGAAATACTATTGG
1 TTTAC--AAAATTACCA-AAATACCCTTGG
**
34614975 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTTGG
** * * *
34615002 TTTGTAGATTTACCAAAACACCCTTG
1 TTTACAAAATTACCAAAATACCCTTG
34615028 TAGGGTGAAA
Statistics
Matches: 243, Mismatches: 40, Indels: 28
0.78 0.13 0.09
Matches are distributed among these distances:
26 26 0.11
27 185 0.76
28 12 0.05
29 20 0.08
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTTGG
Found at i:34615144 original size:27 final size:27
Alignment explanation
Indices: 34615066--34615127 Score: 124
Period size: 27 Copynumber: 2.3 Consensus size: 27
34615056 TAGGTAAAAA
34615066 GACCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
34615093 GACCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
34615120 GACCGTAA
1 GACCGTAA
34615128 TACTCTTGTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.31, C:0.23, G:0.29, T:0.18
Consensus pattern (27 bp):
GACCGTAAAGCCCCTGTAGGGTAAAGT
Found at i:34615149 original size:27 final size:27
Alignment explanation
Indices: 34615058--34615149 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
34615048 ACCCCTATTA
*
34615058 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
*
34615085 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * * *
34615112 GGTAAAGTGACCGTAATA-CTCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
34615139 GGTAAAATGAC
1 GGTAAAATGAC
34615150 GAATATGCCC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 57 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:34615500 original size:20 final size:21
Alignment explanation
Indices: 34615464--34615503 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
34615454 GCACGATGGT
34615464 AAATTGGGCCTCAATGGGCTG
1 AAATTGGGCCTCAATGGGCTG
34615485 AAATTGGGCC-CAATGGGCT
1 AAATTGGGCCTCAATGGGCT
34615504 TTCGGACCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.25, C:0.20, G:0.33, T:0.23
Consensus pattern (21 bp):
AAATTGGGCCTCAATGGGCTG
Found at i:34615907 original size:16 final size:16
Alignment explanation
Indices: 34615886--34615916 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34615876 CAAATATGGG
*
34615886 CATGACATTTTGCATA
1 CATGACATGTTGCATA
34615902 CATGACATGTTGCAT
1 CATGACATGTTGCAT
34615917 TGGGTTAGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (16 bp):
CATGACATGTTGCATA
Found at i:34615979 original size:26 final size:26
Alignment explanation
Indices: 34615950--34616124 Score: 255
Period size: 26 Copynumber: 6.8 Consensus size: 26
34615940 GAGGAAGTGC
34615950 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * **
34615976 AAAAGGGCATATGCCTCAGTTTATCA
1 AAAAGGGCTTATGCCCCAGTTTATTG
34616002 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
***
34616028 AAAAGGGCTTATGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATTG
34616054 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
34616080 AAAAGGGCTT-TGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
34616105 AAAAGGGCTT-TCCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
34616125 ATTAAAGAGG
Statistics
Matches: 133, Mismatches: 16, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
25 33 0.25
26 100 0.75
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:34616378 original size:31 final size:31
Alignment explanation
Indices: 34616343--34616447 Score: 183
Period size: 31 Copynumber: 3.4 Consensus size: 31
34616333 GTTTACAGTA
*
34616343 AAGGCTTCGGCCCAGAGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34616374 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
* *
34616405 AAGGCTTCGGCCTAGTGATATGATTTATGAA
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
34616436 AAGGCTTCGGCC
1 AAGGCTTCGGCC
34616448 TAGTAACCGT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 71 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (31 bp):
AAGGCTTCGGCCCAGTGATATGATTTATGAT
Found at i:34617363 original size:43 final size:42
Alignment explanation
Indices: 34617323--34617430 Score: 121
Period size: 43 Copynumber: 2.5 Consensus size: 42
34617313 CGCATCCATT
34617323 ATGAACTC-GAACCACTCAACGAGCTCGGATGCTCACATCCACA
1 ATGAACTCAG-ACCACTCAACGAGCTCGGATGC-CACATCCACA
* * **
34617366 ATGAACTCAGACCACTCCAGGAGCTCGGATGCCACATATATC-
1 ATGAACTCAGACCACTCAACGAGCTCGGATGCCACATCCA-CA
* *
34617408 ACGAACCCAGACCACTCAACGAG
1 ATGAACTCAGACCACTCAACGAG
34617431 TCCAGACTTC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
42 25 0.45
43 29 0.53
44 1 0.02
ACGTcount: A:0.33, C:0.34, G:0.18, T:0.15
Consensus pattern (42 bp):
ATGAACTCAGACCACTCAACGAGCTCGGATGCCACATCCACA
Found at i:34617420 original size:42 final size:43
Alignment explanation
Indices: 34617333--34617430 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 43
34617323 ATGAACTCGA
* * *
34617333 ACCACTCAACGAGCTCGGATGCTCACATCCACAATGAACTCAG
1 ACCACTCAACGAGCTCGGATGCTCACATACACAACGAACCCAG
* * *
34617376 ACCACTCCAGGAGCTCGGATGC-CACATATATC-ACGAACCCAG
1 ACCACTCAACGAGCTCGGATGCTCACATACA-CAACGAACCCAG
34617418 ACCACTCAACGAG
1 ACCACTCAACGAG
34617431 TCCAGACTTC
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
42 25 0.54
43 21 0.46
ACGTcount: A:0.33, C:0.36, G:0.17, T:0.14
Consensus pattern (43 bp):
ACCACTCAACGAGCTCGGATGCTCACATACACAACGAACCCAG
Found at i:34623085 original size:660 final size:660
Alignment explanation
Indices: 34621825--34623325 Score: 2957
Period size: 660 Copynumber: 2.3 Consensus size: 660
34621815 ATAAAACATC
*
34621825 ATTTGCATTTAATATCTTTCTACGATTTCATCATACCAAGTTCTCAACCCGAGGATTTAAGCACA
1 ATTTGCATTTAATATCTTTATACGATTTCATCATACCAAGTTCTCAACCCGAGGATTTAAGCACA
34621890 TACCTGTCAAATTTTCTCATTCATCACACTTACCAATATGTCACCTTCGTTTTAGGCATTCTTCT
66 TACCTGTCAAATTTTCTCATTCATCACACTTACCAATATGTCACCTTCGTTTTAGGCATTCTTCT
34621955 CATTCACTTAAGATTCACCTGTTGAACACATCGGAATATAATTCGAATACGCGGATTTCATGAAT
131 CATTCACTTAAGATTCACCTGTTGAACACATCGGAATATAATTCGAATACGCGGATTTCATGAAT
34622020 GTAAGTGGCATACCCGCAGCTAGACAAACTCAATAGCCTGCGGAGCTTATGTAGCCAAGCTACCA
196 GTAAGTGGCATACCCGCAGCTAGACAAACTCAATAGCCTGCGGAGCTTATGTAGCCAAGCTACCA
34622085 TGTAACCCGCCCATAAGTGAACTCGGACTCAACATAATGAGATCGGGTGTTCGCATCAATAAGTG
261 TGTAACCCGCCCATAAGTGAACTCGGACTCAACATAATGAGATCGGGTGTTCGCATCAATAAGTG
*
34622150 AACTTGGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCACGAACTCGGACTCAACTCAA
326 AACTTGGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCACGAACTCGAACTCAACTCAA
* *
34622215 CGAGTTCGGAACTCAAATATCCTAGTGACATGTCACTTGTATTCTAATCTATTTCTAAGGTTCAA
391 CGAGTTCAGAACTCAAATATCCTAGTGACATGTCACTTGTATTCTAATCTATTCCTAAGGTTCAA
34622280 ACTGGCTTTTTCCTCGATCTCACATCTTTGCCATCTTCCATGGAATATCGGAACCGATACTCGGT
456 ACTGGCTTTTTCCTCGATCTCACATCTTTGCCATCTTCCATGGAATATCGGAACCGATACTCGGT
34622345 GATAGTTCATACTCATCAAGTAATTCACATAATTACATATTATTCAACAATAACCACAAAACATA
521 GATAGTTCATACTCATCAAGTAATTCACATAATTACATATTATTCAACAATAACCACAAAACATA
34622410 ACATTTCATGATAATAATAAGCATCGTATCATATAAACATCATTTTCATAAACAACACCAAGACA
586 ACATTTCATGATAATAATAAGCATCGTATCATATAAACATCATTTTCATAAACAACACCAAGACA
34622475 TTCATGTTTA
651 TTCATGTTTA
34622485 ATTTGCATTTAATATCTTTATACGATTTCATCATACCAAGTTCTCAACCCGAGGATTTAAGCACA
1 ATTTGCATTTAATATCTTTATACGATTTCATCATACCAAGTTCTCAACCCGAGGATTTAAGCACA
34622550 TACCTGTCAAATTTTCTCATTCATCACACTTACCAATATGTCACCTTCGTTTTAGGCATTCTTCT
66 TACCTGTCAAATTTTCTCATTCATCACACTTACCAATATGTCACCTTCGTTTTAGGCATTCTTCT
34622615 CATTCACTTAAGATTCACCTGTTGAACACATCGGAATATAATTCGAATACGCGGATTTCATGAAT
131 CATTCACTTAAGATTCACCTGTTGAACACATCGGAATATAATTCGAATACGCGGATTTCATGAAT
34622680 GTAAGTGGCATACCCGCAGCTAGACAAACTCAATAGCCTGCGGAGCTTATGTAGCCAAGCTACCA
196 GTAAGTGGCATACCCGCAGCTAGACAAACTCAATAGCCTGCGGAGCTTATGTAGCCAAGCTACCA
34622745 TGTAACCCGCCCATAAGTGAACTCGGACTCAACATAATGAGATCGGGTGTTCGCATCAATAAGTG
261 TGTAACCCGCCCATAAGTGAACTCGGACTCAACATAATGAGATCGGGTGTTCGCATCAATAAGTG
34622810 AACTTGGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCACGAACTCGAACTCAACTCAA
326 AACTTGGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCACGAACTCGAACTCAACTCAA
34622875 CGAGTTCAGAACTCAAATATCCTAGTGACATGTCACTTGTATTCTAATCTATTCCTAAGGTTCAA
391 CGAGTTCAGAACTCAAATATCCTAGTGACATGTCACTTGTATTCTAATCTATTCCTAAGGTTCAA
34622940 ACTGGCTTTTTCCTCGATCTCACATCTTTGCCATCTTCCATGGAATATCGGAACCGATACTCGGT
456 ACTGGCTTTTTCCTCGATCTCACATCTTTGCCATCTTCCATGGAATATCGGAACCGATACTCGGT
34623005 GATAGTTCATACTCATCAAGTAATTCACATAATTACATATTATTCAACAATAACCACAAAACATA
521 GATAGTTCATACTCATCAAGTAATTCACATAATTACATATTATTCAACAATAACCACAAAACATA
34623070 ACATTTCATGATAATAATAAGCATCGTATCATATAAACATCATTTTCATAAACAACACCAAGACA
586 ACATTTCATGATAATAATAAGCATCGTATCATATAAACATCATTTTCATAAACAACACCAAGACA
34623135 TTCATGTTTA
651 TTCATGTTTA
34623145 ATTTGCATTTAATATCTTTATACGATTTCATCATACCAAGTTCTCAACCCGAGGATTTAAGCACA
1 ATTTGCATTTAATATCTTTATACGATTTCATCATACCAAGTTCTCAACCCGAGGATTTAAGCACA
34623210 TACCTGTCAAATTTTCTCATTCATCACACTTACCAATATGTCACCTTCGTTTTAGGCATTCTTCT
66 TACCTGTCAAATTTTCTCATTCATCACACTTACCAATATGTCACCTTCGTTTTAGGCATTCTTCT
*
34623275 CATTCACTTAAGATTCACCCGTTGAACACATCGGAATATAATTCGAATACG
131 CATTCACTTAAGATTCACCTGTTGAACACATCGGAATATAATTCGAATACG
34623326 TACATACATT
Statistics
Matches: 836, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
660 836 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (660 bp):
ATTTGCATTTAATATCTTTATACGATTTCATCATACCAAGTTCTCAACCCGAGGATTTAAGCACA
TACCTGTCAAATTTTCTCATTCATCACACTTACCAATATGTCACCTTCGTTTTAGGCATTCTTCT
CATTCACTTAAGATTCACCTGTTGAACACATCGGAATATAATTCGAATACGCGGATTTCATGAAT
GTAAGTGGCATACCCGCAGCTAGACAAACTCAATAGCCTGCGGAGCTTATGTAGCCAAGCTACCA
TGTAACCCGCCCATAAGTGAACTCGGACTCAACATAATGAGATCGGGTGTTCGCATCAATAAGTG
AACTTGGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCACGAACTCGAACTCAACTCAA
CGAGTTCAGAACTCAAATATCCTAGTGACATGTCACTTGTATTCTAATCTATTCCTAAGGTTCAA
ACTGGCTTTTTCCTCGATCTCACATCTTTGCCATCTTCCATGGAATATCGGAACCGATACTCGGT
GATAGTTCATACTCATCAAGTAATTCACATAATTACATATTATTCAACAATAACCACAAAACATA
ACATTTCATGATAATAATAAGCATCGTATCATATAAACATCATTTTCATAAACAACACCAAGACA
TTCATGTTTA
Found at i:34633491 original size:43 final size:43
Alignment explanation
Indices: 34633411--34633503 Score: 116
Period size: 43 Copynumber: 2.2 Consensus size: 43
34633401 GATTACAATG
* *
34633411 TAAGACCATGTCTGGGACATTGCCATTGTATTGTGATTACGTA
1 TAAGACCATGTCAGGGACATTGCCATTGTAATGTGATTACGTA
** * *
34633454 TAAGACCATGTCAGGGACATTGGTATTGTTAAT-TGATTTCGTG
1 TAAGACCATGTCAGGGACATTGCCATTG-TAATGTGATTACGTA
34633497 TAAGACC
1 TAAGACC
34633504 CTGCCTAGGG
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
43 40 0.93
44 3 0.07
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (43 bp):
TAAGACCATGTCAGGGACATTGCCATTGTAATGTGATTACGTA
Found at i:34635214 original size:16 final size:16
Alignment explanation
Indices: 34635190--34635220 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34635180 TGGTTCACTG
34635190 TAATAGAATAGAGCTA
1 TAATAGAATAGAGCTA
*
34635206 TAATTGAATAGAGCT
1 TAATAGAATAGAGCT
34635221 GTAACAAGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.06, G:0.19, T:0.29
Consensus pattern (16 bp):
TAATAGAATAGAGCTA
Found at i:34641586 original size:46 final size:46
Alignment explanation
Indices: 34641536--34641708 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
34641526 TGGTTGAGCA
34641536 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
34641582 TCCGAACTTGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
34641627 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
34641675 -CTCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
34641709 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 14, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 4 0.04
46 57 0.55
47 27 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:34641692 original size:93 final size:93
Alignment explanation
Indices: 34641533--34641703 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
34641523 GGATGGTTGA
* *
34641533 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTTGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
34641598 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
34641626 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-CTCGAGCTCGTTGAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC-CGAACTCGTTGAG
*
34641690 TTGAGTCTGAGTTC
65 TTGAGTCCGAGTTC
34641704 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:34641969 original size:19 final size:20
Alignment explanation
Indices: 34641932--34641969 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
34641922 ATAAGGTGGT
34641932 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
34641952 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
34641970 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:34643541 original size:44 final size:42
Alignment explanation
Indices: 34643491--34643639 Score: 135
Period size: 43 Copynumber: 3.5 Consensus size: 42
34643481 TGTGTTATCA
34643491 TGTAAGACCACGTCTGGGACATCGGCATCG-ACTTATGATTTACG
1 TGTAAGACCACGTCTGGGACATCGGCATCGTA-TT-TGATTTA-G
* * *
34643535 TGTAAGACCATGTTTGGGACATTGGCATCGTATTTGATTTAG
1 TGTAAGACCACGTCTGGGACATCGGCATCGTATTTGATTTAG
* * * *
34643577 TGTAAGACC-CTTTTTGGGACAGT-GGCATCAATATTTGA-TTACA
1 TGTAAGACCAC-GTCTGGGACA-TCGGCATC-GTATTTGATTTA-G
*
34643620 TGTAAGACCACGTCTAGGAC
1 TGTAAGACCACGTCTGGGAC
34643640 GTTGGAATTG
Statistics
Matches: 89, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
42 28 0.31
43 30 0.34
44 30 0.34
45 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATCGGCATCGTATTTGATTTAG
Found at i:34643593 original size:42 final size:43
Alignment explanation
Indices: 34643491--34643629 Score: 158
Period size: 42 Copynumber: 3.2 Consensus size: 43
34643481 TGTGTTATCA
* * *
34643491 TGTAAGACCACGTCTGGGACATCGGCATCG-ACTTATGATTTACG
1 TGTAAGACCATGTTTGGGACATTGGCATCGTA-TT-TGATTTACG
34643535 TGTAAGACCATGTTTGGGACATTGGCATCGTATTTGATTTA-G
1 TGTAAGACCATGTTTGGGACATTGGCATCGTATTTGATTTACG
* * * * *
34643577 TGTAAGACCCTTTTTGGGACAGTGGCATCAATATTTGA-TTACA
1 TGTAAGACCATGTTTGGGACATTGGCATC-GTATTTGATTTACG
34643620 TGTAAGACCA
1 TGTAAGACCA
34643630 CGTCTAGGAC
Statistics
Matches: 83, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
42 30 0.36
43 23 0.28
44 29 0.35
45 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTTTGGGACATTGGCATCGTATTTGATTTACG
Found at i:34647946 original size:43 final size:43
Alignment explanation
Indices: 34647801--34647957 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 43
34647791 TGTGTTATCA
** * * *
34647801 TGTAAGACCATGTCCGGGATGTTGGCATCGACT-TATGATTTACG
1 TGTAAGACCACATCTGGGACGTTGGCATCGA-TATTTGA-TTACG
* * *
34647845 TGTAAGACCACACCTAGGACGTTGGCATC-ATATTTGATTTCG
1 TGTAAGACCACATCTGGGACGTTGGCATCGATATTTGATTACG
* *
34647887 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-ATCTGGGAC-GTTGGCATCGATATTTGATTACG
34647930 TGTAAGACCACATCTGGGACGTTGGCAT
1 TGTAAGACCACATCTGGGACGTTGGCAT
34647958 TGTATGAGCT
Statistics
Matches: 93, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
41 1 0.01
42 28 0.30
43 40 0.43
44 24 0.26
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACATCTGGGACGTTGGCATCGATATTTGATTACG
Found at i:34658254 original size:25 final size:25
Alignment explanation
Indices: 34658224--34658321 Score: 81
Period size: 25 Copynumber: 4.0 Consensus size: 25
34658214 GCACTCTCTC
* *
34658224 GAGCCATATCACGGGAAGCTCATGT
1 GAGCCATATAACGGGAAGCTCATGA
* * * **
34658249 GAGCCATGTAACGAGAAGCTTATCC
1 GAGCCATATAACGGGAAGCTCATGA
* * * *
34658274 GGGCTATATAACAGGAAGCTCATAA
1 GAGCCATATAACGGGAAGCTCATGA
*
34658299 GAGCCATA-ATCGGGAAGCTCATG
1 GAGCCATATAACGGGAAGCTCATG
34658322 CGATCCAATA
Statistics
Matches: 54, Mismatches: 19, Indels: 1
0.73 0.26 0.01
Matches are distributed among these distances:
24 12 0.22
25 42 0.78
ACGTcount: A:0.33, C:0.21, G:0.27, T:0.19
Consensus pattern (25 bp):
GAGCCATATAACGGGAAGCTCATGA
Found at i:34665531 original size:40 final size:41
Alignment explanation
Indices: 34665435--34665539 Score: 126
Period size: 40 Copynumber: 2.6 Consensus size: 41
34665425 TGAATGATGT
*
34665435 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAA
* * * *
34665475 CCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTATAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACCATAA
*
34665515 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
34665540 AACGAGTAGC
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
39 1 0.02
40 46 0.84
41 8 0.15
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAA
Found at i:34666456 original size:50 final size:50
Alignment explanation
Indices: 34666381--34666481 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
34666371 AACCTTGATG
34666381 AATCTACTTTCATAGGAAAGTAACGAAACAATCATACGGACAGTATGTTA
1 AATCTACTTTCATAGGAAAGTAACGAAACAATCATACGGACAGTATGTTA
34666431 AATCTACTTTCATAGGAAAGTAACGAAACAATCATACGGACAGTATGTTA
1 AATCTACTTTCATAGGAAAGTAACGAAACAATCATACGGACAGTATGTTA
34666481 A
1 A
34666482 GAGATATTCA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.26
Consensus pattern (50 bp):
AATCTACTTTCATAGGAAAGTAACGAAACAATCATACGGACAGTATGTTA
Found at i:34669570 original size:56 final size:56
Alignment explanation
Indices: 34669491--34669603 Score: 199
Period size: 56 Copynumber: 2.0 Consensus size: 56
34669481 GACCGAACAT
34669491 GCTGAGCACCTGAGACTAGTGTTGCAAATTTTACGGGATAAGCAGTTATATGCTAA
1 GCTGAGCACCTGAGACTAGTGTTGCAAATTTTACGGGATAAGCAGTTATATGCTAA
* * *
34669547 GCTGAGCATCTGAGGCTAGTGTTGCAAATTTTGCGGGATAAGCAGTTATATGCTAA
1 GCTGAGCACCTGAGACTAGTGTTGCAAATTTTACGGGATAAGCAGTTATATGCTAA
34669603 G
1 G
34669604 TTCAGTAAGT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.29
Consensus pattern (56 bp):
GCTGAGCACCTGAGACTAGTGTTGCAAATTTTACGGGATAAGCAGTTATATGCTAA
Found at i:34670045 original size:48 final size:48
Alignment explanation
Indices: 34669972--34670067 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 48
34669962 TTGGGTTGGG
*
34669972 TTGCGTATTGATGCAAGAAGTTCGAGTGGTGGCCTATGCGTCGAGACA
1 TTGCGTATTGATGCAAGAAGGTCGAGTGGTGGCCTATGCGTCGAGACA
*
34670020 TTGCGTATTGATGCAAGAAGGTCGAGTTGTGGCCTATGCGTCGAGACA
1 TTGCGTATTGATGCAAGAAGGTCGAGTGGTGGCCTATGCGTCGAGACA
34670068 ATTGAAGCCA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.23, C:0.17, G:0.33, T:0.27
Consensus pattern (48 bp):
TTGCGTATTGATGCAAGAAGGTCGAGTGGTGGCCTATGCGTCGAGACA
Found at i:34673899 original size:39 final size:40
Alignment explanation
Indices: 34673804--34674026 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
34673794 TTGAATGATG
*
34673804 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
34673842 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
34673883 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
34673922 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
34673961 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
34674000 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
34674027 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
39 91 0.56
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:34673990 original size:79 final size:80
Alignment explanation
Indices: 34673804--34674026 Score: 285
Period size: 79 Copynumber: 2.8 Consensus size: 80
34673794 TTGAATGATG
* * * *
34673804 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTATATCCGGGCTAAGACCCGAAGGCATT
*
34673867 TGTGCGAGATACTAAT
65 TGTGCGAGATACTAAA
*
34673883 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTATTTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTATATCCGGGCTAAGACCCGAAGGCATT
*
34673945 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* * * * *
34673961 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTATATCCGGGCTAAGACCCGAAGGCATTT
34674026 G
66 G
34674027 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 12, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
78 44 0.35
79 60 0.48
80 22 0.17
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:34674048 original size:79 final size:79
Alignment explanation
Indices: 34673804--34674059 Score: 222
Period size: 79 Copynumber: 3.3 Consensus size: 79
34673794 TTGAATGATG
* * * * * *
34673804 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGACAATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAACCGGGCTAAG-CCCGAAGGCAT
** *
34673866 TTGTGCGAGAT-ACTAAT
63 TTGAACGAG-TGACTAAA
* **
34673883 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTATTTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGCCCGAAGGCATTTG
** *
34673947 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
34673961 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTATAACCGGGCTAAG-CCCGAAGGCATT
*
34674025 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
34674041 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
34674060 TACGTGATTT
Statistics
Matches: 153, Mismatches: 16, Indels: 16
0.83 0.09 0.09
Matches are distributed among these distances:
77 1 0.01
78 44 0.29
79 74 0.48
80 33 0.22
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:34677803 original size:22 final size:22
Alignment explanation
Indices: 34677777--34677820 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
34677767 GATGCCGTTT
*
34677777 GGGCTCACAAATGCCCTTGCGG
1 GGGCTCACAAATGCCCCTGCGG
*
34677799 GGGCTCACTAATGCCCCTGCGG
1 GGGCTCACAAATGCCCCTGCGG
34677821 TGTTTATGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.16, C:0.34, G:0.32, T:0.18
Consensus pattern (22 bp):
GGGCTCACAAATGCCCCTGCGG
Found at i:34681816 original size:29 final size:28
Alignment explanation
Indices: 34681780--34681857 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
34681770 TCATGAGATT
34681780 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
34681810 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
34681837 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
34681858 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:34682075 original size:174 final size:174
Alignment explanation
Indices: 34681810--34682137 Score: 611
Period size: 174 Copynumber: 1.9 Consensus size: 174
34681800 AAATTGTACA
*
34681810 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
34681875 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCAAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCAAGTCAA
34681940 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
34681984 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
34682049 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCAAGTCAA
34682114 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
34682138 ACCTTGAGTT
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCAAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:34683390 original size:54 final size:54
Alignment explanation
Indices: 34683218--34683390 Score: 161
Period size: 55 Copynumber: 3.2 Consensus size: 54
34683208 TTCTATAGAA
* *
34683218 ATGGTATCCTTGCCTTAT-GAACTCACCATTGCCATGCCTTGGAATGGTCTTAC
1 ATGGTATCCTTGCCTTATAGAACTTACCAATGCCATGCCTTGGAATGGTCTTAC
* * * * ** * * *
34683271 ATGGGATCTTTTCCCTATAGTAGTTTATCAATGCCATGTCTT-GACATGGTCCTAC
1 ATGGTATCCTTGCCTTATAG-AACTTACCAATGCCATGCCTTGGA-ATGGTCTTAC
* * * * *
34683326 ATGATTTCCTTGCCTTGTAGAACTTACCAAAGCCATGCCTTGGTATGGTCTTAC
1 ATGGTATCCTTGCCTTATAGAACTTACCAATGCCATGCCTTGGAATGGTCTTAC
*
34683380 TTGGTATCCTT
1 ATGGTATCCTT
34683391 AAACCCTAAT
Statistics
Matches: 88, Mismatches: 28, Indels: 7
0.72 0.23 0.06
Matches are distributed among these distances:
53 14 0.16
54 36 0.41
55 38 0.43
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (54 bp):
ATGGTATCCTTGCCTTATAGAACTTACCAATGCCATGCCTTGGAATGGTCTTAC
Found at i:34686769 original size:36 final size:36
Alignment explanation
Indices: 34686722--34686793 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
34686712 AACCTAATGG
34686722 TCTAATTACCATTTAAGGACCTCTACTTCAATTATA
1 TCTAATTACCATTTAAGGACCTCTACTTCAATTATA
34686758 TCTAATTACCATTTAAGGACCTCTACTTCAATTATA
1 TCTAATTACCATTTAAGGACCTCTACTTCAATTATA
34686794 CTCTTCAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.33, C:0.22, G:0.06, T:0.39
Consensus pattern (36 bp):
TCTAATTACCATTTAAGGACCTCTACTTCAATTATA
Found at i:34687334 original size:53 final size:53
Alignment explanation
Indices: 34687251--34687356 Score: 135
Period size: 53 Copynumber: 2.0 Consensus size: 53
34687241 AGGTGTAATA
*
34687251 AAATATTAGTTTTGTGGTGTTGGAGGTGTGAATATTCTATAG-TGTATATATAT
1 AAATATTAGTTTTATGGTGTTGGAGGTGTGAATATTCTA-AGATGTATATATAT
* * * *
34687304 AAATATTAGTTTTATGGTGTCTTG-GTTGTGAATGTTCTACGATGTATATATAT
1 AAATATTAGTTTTATGGTGT-TGGAGGTGTGAATATTCTAAGATGTATATATAT
34687357 TTGAAGTATG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
52 1 0.02
53 43 0.93
54 2 0.04
ACGTcount: A:0.27, C:0.04, G:0.23, T:0.46
Consensus pattern (53 bp):
AAATATTAGTTTTATGGTGTTGGAGGTGTGAATATTCTAAGATGTATATATAT
Found at i:34688203 original size:133 final size:133
Alignment explanation
Indices: 34687965--34688231 Score: 534
Period size: 133 Copynumber: 2.0 Consensus size: 133
34687955 CAAGATGATG
34687965 AATGATGAGCTCATCTATATAAATTACATGACGCTTTGTTATGTGACTAACTCATTAATTGAGTG
1 AATGATGAGCTCATCTATATAAATTACATGACGCTTTGTTATGTGACTAACTCATTAATTGAGTG
34688030 CATGTGGTAGGAAATCATTTCATAATAGATGATTCCATGAATTGAGTATGGATGTATGCTAATTA
66 CATGTGGTAGGAAATCATTTCATAATAGATGATTCCATGAATTGAGTATGGATGTATGCTAATTA
34688095 TTC
131 TTC
34688098 AATGATGAGCTCATCTATATAAATTACATGACGCTTTGTTATGTGACTAACTCATTAATTGAGTG
1 AATGATGAGCTCATCTATATAAATTACATGACGCTTTGTTATGTGACTAACTCATTAATTGAGTG
34688163 CATGTGGTAGGAAATCATTTCATAATAGATGATTCCATGAATTGAGTATGGATGTATGCTAATTA
66 CATGTGGTAGGAAATCATTTCATAATAGATGATTCCATGAATTGAGTATGGATGTATGCTAATTA
34688228 TTC
131 TTC
34688231 A
1 A
34688232 GTAAGTTTAC
Statistics
Matches: 134, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
133 134 1.00
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.37
Consensus pattern (133 bp):
AATGATGAGCTCATCTATATAAATTACATGACGCTTTGTTATGTGACTAACTCATTAATTGAGTG
CATGTGGTAGGAAATCATTTCATAATAGATGATTCCATGAATTGAGTATGGATGTATGCTAATTA
TTC
Found at i:34690262 original size:26 final size:26
Alignment explanation
Indices: 34690201--34690252 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
34690191 CACATTATAT
34690201 CAACACTTAAGCAAACATCAAAATTA
1 CAACACTTAAGCAAACATCAAAATTA
34690227 CAACACTTAAGCAAACATCAAAATTA
1 CAACACTTAAGCAAACATCAAAATTA
34690253 ACTCATTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.54, C:0.23, G:0.04, T:0.19
Consensus pattern (26 bp):
CAACACTTAAGCAAACATCAAAATTA
Found at i:34692883 original size:43 final size:42
Alignment explanation
Indices: 34692832--34692977 Score: 184
Period size: 43 Copynumber: 3.4 Consensus size: 42
34692822 TATCCTAGAT
* *
34692832 ATGGTCTTACATGTTATCAAATATCGATGCCATTGTCCCAGAC
1 ATGGTCTTACATGTAATCAAATA-CGATGCCAATGTCCCAGAC
* *
34692875 AGGGTCTTACATGTAATCAATTAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCAAAT-ACGATGCCAATGTCCCAGAC
* * * * *
34692918 ATGGTCTTACACGTAATCACAATACAAAGCCAATGTCTCAAAC
1 ATGGTCTTACATGTAATCA-AATACGATGCCAATGTCCCAGAC
34692961 ATGGTCTTACATGTAAT
1 ATGGTCTTACATGTAAT
34692978 GACATCTCGG
Statistics
Matches: 89, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
43 86 0.97
44 3 0.03
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGGTCTTACATGTAATCAAATACGATGCCAATGTCCCAGAC
Found at i:34693531 original size:18 final size:18
Alignment explanation
Indices: 34693510--34693550 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
34693500 ATTTAGTCCA
34693510 AAATTGACATTTTTACCG
1 AAATTGACATTTTTACCG
34693528 AAATTGACATTTTTACCG
1 AAATTGACATTTTTACCG
34693546 AAATT
1 AAATT
34693551 CACTTTACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.39
Consensus pattern (18 bp):
AAATTGACATTTTTACCG
Found at i:34697111 original size:49 final size:49
Alignment explanation
Indices: 34697052--34697147 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
34697042 CCCAAAGGAG
*
34697052 ATCATTGTAAACCATTTAATTACAAATGCTTTACTCAGCTATCCTTACA
1 ATCATCGTAAACCATTTAATTACAAATGCTTTACTCAGCTATCCTTACA
34697101 ATCATCGTAAACCATTTAATTACAAATGCTTTACTCAGCTATCCTTA
1 ATCATCGTAAACCATTTAATTACAAATGCTTTACTCAGCTATCCTTA
34697148 AAATTCAAAC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.34, C:0.23, G:0.06, T:0.36
Consensus pattern (49 bp):
ATCATCGTAAACCATTTAATTACAAATGCTTTACTCAGCTATCCTTACA
Found at i:34698630 original size:22 final size:22
Alignment explanation
Indices: 34698602--34698646 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
34698592 TAATTTGACT
*
34698602 TATGAATTTAACTAACTCCACA
1 TATGAATTCAACTAACTCCACA
*
34698624 TATGAATTCATCTAACTCCACA
1 TATGAATTCAACTAACTCCACA
34698646 T
1 T
34698647 CTTTACTAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.38, C:0.24, G:0.04, T:0.33
Consensus pattern (22 bp):
TATGAATTCAACTAACTCCACA
Found at i:34713612 original size:9 final size:9
Alignment explanation
Indices: 34713598--34713624 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
34713588 GAAATGGGCC
34713598 GAAAATGGA
1 GAAAATGGA
34713607 GAAAATGGA
1 GAAAATGGA
34713616 GAAAATGGA
1 GAAAATGGA
34713625 CCCACGTGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.33, T:0.11
Consensus pattern (9 bp):
GAAAATGGA
Found at i:34721010 original size:26 final size:26
Alignment explanation
Indices: 34720973--34721025 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34720963 CCCTGAACTT
34720973 TGTCTTAGTCTCACGTGAATCACTCA
1 TGTCTTAGTCTCACGTGAATCACTCA
*
34720999 TGTCTTATTCTCACGTGAATCACTCA
1 TGTCTTAGTCTCACGTGAATCACTCA
34721025 T
1 T
34721026 ATCACTATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.38
Consensus pattern (26 bp):
TGTCTTAGTCTCACGTGAATCACTCA
Found at i:34736323 original size:51 final size:51
Alignment explanation
Indices: 34736262--34736460 Score: 319
Period size: 51 Copynumber: 3.9 Consensus size: 51
34736252 TGAACCTTAG
*
34736262 GAATAAAATAGCTTTGGACATAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
34736313 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
34736364 AAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * *
34736415 GAATAAAATAGCTTTGG-CTACAAGGGTAGTACTATGTGAAAGCCAC
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCAC
34736461 CGTGTATCCA
Statistics
Matches: 139, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
50 1 0.01
51 138 0.99
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.30
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:34739715 original size:21 final size:22
Alignment explanation
Indices: 34739675--34739715 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
34739665 TTCCAAATAA
* *
34739675 AACATTATATCATTTCTAATTC
1 AACATTATATCAATTATAATTC
34739697 AACATT-TATCAATTATAAT
1 AACATTATATCAATTATAAT
34739716 CGGGCATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (22 bp):
AACATTATATCAATTATAATTC
Found at i:34741443 original size:607 final size:607
Alignment explanation
Indices: 34740291--34741505 Score: 2430
Period size: 607 Copynumber: 2.0 Consensus size: 607
34740281 TGCTTACATA
34740291 ATTTCTTTTATAAGAAACTAGACTTAATAAGCTTTAATTTCATATTTTATTCATCTTCTAATTCG
1 ATTTCTTTTATAAGAAACTAGACTTAATAAGCTTTAATTTCATATTTTATTCATCTTCTAATTCG
34740356 ATGTCTACAATTTTTGGTGATTTTTCAAAGTTAAACTACTGCTGCTACCCAAAACAGTTTTATTG
66 ATGTCTACAATTTTTGGTGATTTTTCAAAGTTAAACTACTGCTGCTACCCAAAACAGTTTTATTG
34740421 CAAAATGTTGATTTCGATTTTGCCCCAAATTTCACAATTCATACAATTCAGTCCTTGCTCAATTA
131 CAAAATGTTGATTTCGATTTTGCCCCAAATTTCACAATTCATACAATTCAGTCCTTGCTCAATTA
34740486 ACCCATAAATTAAGATAATTTTCTCAATTAATACTTTTCTAGACATTATAAGTTATTTCATAACT
196 ACCCATAAATTAAGATAATTTTCTCAATTAATACTTTTCTAGACATTATAAGTTATTTCATAACT
34740551 ATTGAAATTCAAAATTTTCACATAAAACTCTAACTTCAAACTCTTTTTACAATTAGGTCCCAAAC
261 ATTGAAATTCAAAATTTTCACATAAAACTCTAACTTCAAACTCTTTTTACAATTAGGTCCCAAAC
34740616 ATTCACTTTCTATTCAATTCTTTCAATAAAATCAGAATATAAACAATTTAAAGCTCTAATTCCAT
326 ATTCACTTTCTATTCAATTCTTTCAATAAAATCAGAATATAAACAATTTAAAGCTCTAATTCCAT
34740681 GCCAAATCATCATATACTTCCAGCACTCATCCATAACAACTTCAAAAATTAGCCATGGAATCAAA
391 GCCAAATCATCATATACTTCCAGCACTCATCCATAACAACTTCAAAAATTAGCCATGGAATCAAA
34740746 AACTAATGAAATAGTAAGTTGGGCCCAATTGTAAAGGTCCAAAAACATGAAAATTTCAAGGAGAA
456 AACTAATGAAATAGTAAGTTGGGCCCAATTGTAAAGGTCCAAAAACATGAAAATTTCAAGGAGAA
34740811 AGCAAGAATTAAACTTACATGAAGCTAGAGTATAAAAACCAGCTTGAACCCCTCTACATGGCTGT
521 AGCAAGAATTAAACTTACATGAAGCTAGAGTATAAAAACCAGCTTGAACCCCTCTACATGGCTGT
34740876 TTTTCAACTGGTGAATATAAAC
586 TTTTCAACTGGTGAATATAAAC
34740898 ATTTCTTTTATAAGAAACTAGACTTAATAAGCTTTAATTTCATATTTTATTCATCTTCTAATTCG
1 ATTTCTTTTATAAGAAACTAGACTTAATAAGCTTTAATTTCATATTTTATTCATCTTCTAATTCG
34740963 ATGTCTACAATTTTTGGTGATTTTTCAAAGTTAAACTACTGCTGCTACCCAAAACAGTTTTATTG
66 ATGTCTACAATTTTTGGTGATTTTTCAAAGTTAAACTACTGCTGCTACCCAAAACAGTTTTATTG
34741028 CAAAATGTTGATTTCGATTTTGCCCCAAATTTCACAATTCATACAATTCAGTCCTTGCTCAATTA
131 CAAAATGTTGATTTCGATTTTGCCCCAAATTTCACAATTCATACAATTCAGTCCTTGCTCAATTA
34741093 ACCCATAAATTAAGATAATTTTCTCAATTAATACTTTTCTAGACATTATAAGTTATTTCATAACT
196 ACCCATAAATTAAGATAATTTTCTCAATTAATACTTTTCTAGACATTATAAGTTATTTCATAACT
34741158 ATTGAAATTCAAAATTTTCACATAAAACTCTAACTTCAAACTCTTTTTACAATTAGGTCCCAAAC
261 ATTGAAATTCAAAATTTTCACATAAAACTCTAACTTCAAACTCTTTTTACAATTAGGTCCCAAAC
34741223 ATTCACTTTCTATTCAATTCTTTCAATAAAATCAGAATATAAACAATTTAAAGCTCTAATTCCAT
326 ATTCACTTTCTATTCAATTCTTTCAATAAAATCAGAATATAAACAATTTAAAGCTCTAATTCCAT
34741288 GCCAAATCATCATATACTTCCAGCACTCATCCATAACAACTTCAAAAATTAGCCATGGAATCAAA
391 GCCAAATCATCATATACTTCCAGCACTCATCCATAACAACTTCAAAAATTAGCCATGGAATCAAA
34741353 AACTAATGAAATAGTAAGTTGGGCCCAATTGTAAAGGTCCAAAAACATGAAAATTTCAAGGAGAA
456 AACTAATGAAATAGTAAGTTGGGCCCAATTGTAAAGGTCCAAAAACATGAAAATTTCAAGGAGAA
34741418 AGCAAGAATTAAACTTACATGAAGCTAGAGTATAAAAACCAGCTTGAACCCCTCTACATGGCTGT
521 AGCAAGAATTAAACTTACATGAAGCTAGAGTATAAAAACCAGCTTGAACCCCTCTACATGGCTGT
34741483 TTTTCAACTGGTGAATATAAAC
586 TTTTCAACTGGTGAATATAAAC
34741505 A
1 A
34741506 GAAATGAAGA
Statistics
Matches: 608, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
607 608 1.00
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.34
Consensus pattern (607 bp):
ATTTCTTTTATAAGAAACTAGACTTAATAAGCTTTAATTTCATATTTTATTCATCTTCTAATTCG
ATGTCTACAATTTTTGGTGATTTTTCAAAGTTAAACTACTGCTGCTACCCAAAACAGTTTTATTG
CAAAATGTTGATTTCGATTTTGCCCCAAATTTCACAATTCATACAATTCAGTCCTTGCTCAATTA
ACCCATAAATTAAGATAATTTTCTCAATTAATACTTTTCTAGACATTATAAGTTATTTCATAACT
ATTGAAATTCAAAATTTTCACATAAAACTCTAACTTCAAACTCTTTTTACAATTAGGTCCCAAAC
ATTCACTTTCTATTCAATTCTTTCAATAAAATCAGAATATAAACAATTTAAAGCTCTAATTCCAT
GCCAAATCATCATATACTTCCAGCACTCATCCATAACAACTTCAAAAATTAGCCATGGAATCAAA
AACTAATGAAATAGTAAGTTGGGCCCAATTGTAAAGGTCCAAAAACATGAAAATTTCAAGGAGAA
AGCAAGAATTAAACTTACATGAAGCTAGAGTATAAAAACCAGCTTGAACCCCTCTACATGGCTGT
TTTTCAACTGGTGAATATAAAC
Found at i:34743541 original size:25 final size:24
Alignment explanation
Indices: 34743507--34743561 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 24
34743497 AATACGAAAA
34743507 CACATTTTCAAATGTCAGAAGTCAT
1 CACATTTTCAAATGTCAGAAGT-AT
34743532 CACATTTTCAAATGTCAGAAGTAT
1 CACATTTTCAAATGTCAGAAGTAT
34743556 CACATT
1 CACATT
34743562 ATCGCAGTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 8 0.27
25 22 0.73
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.33
Consensus pattern (24 bp):
CACATTTTCAAATGTCAGAAGTAT
Found at i:34748796 original size:34 final size:34
Alignment explanation
Indices: 34748749--34748822 Score: 96
Period size: 34 Copynumber: 2.2 Consensus size: 34
34748739 ATTGCATTAC
* *
34748749 TGATACTGTTACTG-TAATCGGCTAAGGCCCACAA
1 TGATACTGCTACTGCT-ATCGGCTAAAGCCCACAA
* *
34748783 TGATACTGCTACTGCTATGGGCTAAAGCCCACAC
1 TGATACTGCTACTGCTATCGGCTAAAGCCCACAA
34748817 TGATAC
1 TGATAC
34748823 CGGACTATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 34 0.97
35 1 0.03
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (34 bp):
TGATACTGCTACTGCTATCGGCTAAAGCCCACAA
Found at i:34749651 original size:42 final size:44
Alignment explanation
Indices: 34749598--34749697 Score: 125
Period size: 42 Copynumber: 2.3 Consensus size: 44
34749588 GGCTGTTACA
* * *
34749598 ATGCCACTGTCCTAAACAGGGTCTTACAC-GAAATCA-AA-TATG
1 ATGCCAATGTCCCAAACAGGGTCTTACACAGAAATCATAAGT-CG
* *
34749640 ATGCCAATGTCCCAAACATGGTCTTACACATAAATCATAAGTCG
1 ATGCCAATGTCCCAAACAGGGTCTTACACAGAAATCATAAGTCG
34749684 ATGCCAATGTCCCA
1 ATGCCAATGTCCCA
34749698 GACGTGGTCT
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
42 26 0.52
43 6 0.12
44 17 0.34
45 1 0.02
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (44 bp):
ATGCCAATGTCCCAAACAGGGTCTTACACAGAAATCATAAGTCG
Found at i:34749697 original size:44 final size:42
Alignment explanation
Indices: 34749598--34749714 Score: 128
Period size: 44 Copynumber: 2.7 Consensus size: 42
34749588 GGCTGTTACA
* * * *
34749598 ATGCCACTGTCCTAAACAGGGTCTTACACGAAATCAAATATG
1 ATGCCAATGTCCCAAACATGGTCTTACACGAAATCAAATACG
*
34749640 ATGCCAATGTCCCAAACATGGTCTTACACATAAATCATAAGT-CG
1 ATGCCAATGTCCCAAACATGGTCTTACAC-GAAATCA-AA-TACG
* * *
34749684 ATGCCAATGTCCCAGACGTGGTCTTGCACGA
1 ATGCCAATGTCCCAAACATGGTCTTACACGA
34749715 GAACGCATAT
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
42 26 0.41
43 7 0.11
44 29 0.46
45 1 0.02
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCCAAACATGGTCTTACACGAAATCAAATACG
Found at i:34753826 original size:46 final size:45
Alignment explanation
Indices: 34753755--34753919 Score: 140
Period size: 46 Copynumber: 3.6 Consensus size: 45
34753745 NNNNNNNNNN
* * **
34753755 CTCGTTGAGTTGAGTCTGAGGTCACTAGGATATTTGGGCATCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTAGGATAAAT-GGCATCCGAA
*
34753801 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT-G--TCTGAA
1 CTCGTTGAGTTGAGTCCGAGTTCAC-TA-GGAT--AAATGGCATCCGAA
* * * * *
34753847 CTCGTTGAGTTGAGTCCGGGTTCGAGTGATG-TAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTC-ACT-AGGATAAAT-GGCATCCGAA
34753894 CTCGTTGAGTTGAGTCCGAGTTCACT
1 CTCGTTGAGTTGAGTCCGAGTTCACT
34753920 TATGGGCGGG
Statistics
Matches: 96, Mismatches: 13, Indels: 20
0.74 0.10 0.16
Matches are distributed among these distances:
43 3 0.03
45 2 0.02
46 54 0.56
47 30 0.31
48 5 0.05
50 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.31
Consensus pattern (45 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTAGGATAAATGGCATCCGAA
Found at i:34759309 original size:46 final size:45
Alignment explanation
Indices: 34759256--34759431 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
34759246 TATTTGGGCA
34759256 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
34759302 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
34759349 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
34759395 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
34759432 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:34759411 original size:93 final size:93
Alignment explanation
Indices: 34759252--34759423 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
34759242 AGGATATTTG
* *
34759252 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
34759317 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
34759345 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
34759410 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
34759424 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:34768273 original size:24 final size:24
Alignment explanation
Indices: 34768241--34768340 Score: 103
Period size: 24 Copynumber: 4.0 Consensus size: 24
34768231 TGACATTGTG
*
34768241 CTAAGTGAAATAAGACCATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
**
34768265 CTAAGTGAAATAAGTTTA-GGACAATGT
1 CTAAGTGAAATAAGTCCATGG-C-A--T
*
34768292 GCTAAGTGAAATAAGTCGATGGCAT
1 -CTAAGTGAAATAAGTCCATGGCAT
*
34768317 CTAAGTGAAGTAAGTCCATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
34768341 TGTGCTTAGT
Statistics
Matches: 63, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
23 2 0.03
24 38 0.60
25 2 0.03
27 2 0.03
28 17 0.27
29 2 0.03
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.25
Consensus pattern (24 bp):
CTAAGTGAAATAAGTCCATGGCAT
Found at i:34768306 original size:52 final size:52
Alignment explanation
Indices: 34768232--34768331 Score: 164
Period size: 52 Copynumber: 1.9 Consensus size: 52
34768222 TCTAGGATAT
*
34768232 GACATTGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTTTAG
1 GACAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTTTAG
* * *
34768284 GACAATGTGCTAAGTGAAATAAGTCGATGGCATCTAAGTGAAGTAAGT
1 GACAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGT
34768332 CCATGGCATT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.26
Consensus pattern (52 bp):
GACAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTTTAG
Found at i:34768345 original size:52 final size:52
Alignment explanation
Indices: 34768232--34768346 Score: 160
Period size: 52 Copynumber: 2.2 Consensus size: 52
34768222 TCTAGGATAT
**
34768232 GACATTGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTTTAG
1 GACATTGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCAG
* * * *
34768284 GACAATGTGCTAAGTGAAATAAGTCGATGGCATCTAAGTGAAGTAAGTCCATG
1 GACATTGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCA-G
34768337 G-CATTGTGCT
1 GACATTGTGCT
34768347 TAGTAAGAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
52 53 0.96
53 2 0.04
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.27
Consensus pattern (52 bp):
GACATTGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCAG
Found at i:34768452 original size:51 final size:51
Alignment explanation
Indices: 34768376--34768523 Score: 235
Period size: 51 Copynumber: 2.9 Consensus size: 51
34768366 TGAACCTTAG
*
34768376 GAATAAAATAGCTTTGGAAACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
34768427 GAATATAATAGCTTTGGACACAAGTGTGCTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
34768478 GAATAAAATAGCTTTGG-CTACAAGGGTGGTACTATGTGAATGCCAC
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCAC
34768524 CGTGTATCGT
Statistics
Matches: 89, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
50 1 0.01
51 88 0.99
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:34775014 original size:21 final size:21
Alignment explanation
Indices: 34774990--34775031 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
34774980 TGAGAATGAA
34774990 TGTTATATGTTGTGTATTGAT
1 TGTTATATGTTGTGTATTGAT
34775011 TGTTATATGTTGTGTATTGAT
1 TGTTATATGTTGTGTATTGAT
34775032 CAGTAATACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.24, T:0.57
Consensus pattern (21 bp):
TGTTATATGTTGTGTATTGAT
Found at i:34778164 original size:27 final size:27
Alignment explanation
Indices: 34778134--34778311 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
34778124 ATATTGAGTC
* * * *
34778134 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
34778161 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
34778188 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
34778216 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
34778243 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
34778270 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
34778297 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34778312 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:34778273 original size:82 final size:81
Alignment explanation
Indices: 34778155--34778310 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
34778145 TGCTATATAA
* *
34778155 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
34778220 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
34778237 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
34778301 CACTTAGTGC
65 CACTTAGTGC
34778311 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:34786354 original size:27 final size:27
Alignment explanation
Indices: 34786324--34786502 Score: 191
Period size: 27 Copynumber: 6.6 Consensus size: 27
34786314 ATATTGAGCC
* * *
34786324 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
34786351 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
34786378 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
** * *
34786406 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
34786433 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
*
34786460 CGCACACTTAGTGCAACATAGTCATA-T
1 CGCACACTTAGTGCTACATAGTCA-ACT
34786487 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
34786503 TACAATTTAA
Statistics
Matches: 130, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:34786463 original size:82 final size:81
Alignment explanation
Indices: 34786345--34786500 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
34786335 TGCTATATAA
* *
34786345 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
34786410 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
34786427 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCATATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
34786491 CACTTAGTGC
65 CACTTAGTGC
34786501 TATACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:34787069 original size:13 final size:13
Alignment explanation
Indices: 34787051--34787075 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34787041 TACTAAATTT
34787051 TCATGGATTCAAG
1 TCATGGATTCAAG
34787064 TCATGGATTCAA
1 TCATGGATTCAA
34787076 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:34791221 original size:15 final size:15
Alignment explanation
Indices: 34791203--34791232 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
34791193 AATAACTATT
34791203 ATATTAATAATAAAA
1 ATATTAATAATAAAA
*
34791218 ATATTATTAATAAAA
1 ATATTAATAATAAAA
34791233 TAAGTATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
ATATTAATAATAAAA
Found at i:34794588 original size:62 final size:61
Alignment explanation
Indices: 34794408--34794568 Score: 225
Period size: 61 Copynumber: 2.6 Consensus size: 61
34794398 CCATGTATCT
* * *
34794408 AGGCCGTGTAACTTACTATTTATGATTTAGGACCACACGGGCAAGGACATAGGTGTGTGTCC
1 AGGCCGTGTAACTCACTGTTTATGATTTAGGACCACAC-GGCAAGGACATGGGTGTGTGTCC
* * *
34794470 AAGCCTTGTAACTCAC-GTTTATGATTTAGGACCACATCGGCAAGGACATGGATGTGTGTCC
1 AGGCCGTGTAACTCACTGTTTATGATTTAGGACCACA-CGGCAAGGACATGGGTGTGTGTCC
* *
34794531 AGGCCGTGTAACCCACTGTTTATGATTTAAGACCACAC
1 AGGCCGTGTAACTCACTGTTTATGATTTAGGACCACAC
34794569 AACCAGGGAC
Statistics
Matches: 87, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
61 54 0.62
62 33 0.38
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (61 bp):
AGGCCGTGTAACTCACTGTTTATGATTTAGGACCACACGGCAAGGACATGGGTGTGTGTCC
Found at i:34797041 original size:38 final size:38
Alignment explanation
Indices: 34796998--34797291 Score: 194
Period size: 38 Copynumber: 7.0 Consensus size: 38
34796988 TTTCAAATTA
* *
34796998 ACATGTATAACCATGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
* *
34797036 ACATGTTTAACTGTGGTATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
** *
34797074 A-ATGAATCAATAAATGTAGCCGTATCATATCCACTTAGCACCACATT
1 ACATG--T--ATAACCGT-G--G--T-ATATCCACTTAGCACCACGTT
*
34797121 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACG-T--T
* *
34797162 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGTATATCCACTTAGCACCACGTT
* *
34797206 ACATGTATCAATATGCGTAATTCTGGTATATCCACTTAGCACCATGTT
1 ACATGTAT--A-A-CCG------TGGTATATCCACTTAGCACCACGTT
**
34797254 ACACCTATAACCGTGGTATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
34797292 TTTTCATTCT
Statistics
Matches: 204, Mismatches: 22, Indels: 60
0.71 0.08 0.21
Matches are distributed among these distances:
37 3 0.01
38 78 0.38
39 3 0.01
40 5 0.02
41 10 0.05
42 4 0.02
43 2 0.01
44 10 0.05
45 4 0.02
46 4 0.02
47 49 0.24
48 32 0.16
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
Found at i:34797123 original size:85 final size:85
Alignment explanation
Indices: 34797013--34797211 Score: 344
Period size: 85 Copynumber: 2.3 Consensus size: 85
34797003 TATAACCATG
*
34797013 GCATATCCACTTAGCACCACGTTACATGTTTAACTGTGGTATATCCACTTAGCACCACGTTAATG
1 GCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATG
*
34797078 AATCAATAAATGTAGCCGTA
66 AATCAATAAATGTAACCGTA
* *
34797098 TCATATCCACTTAGCACCACATTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATG
1 GCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATG
* *
34797163 AATCAATATATGTAACCGTG
66 AATCAATAAATGTAACCGTA
34797183 GCATATCCACTTAGCACCACGTTACATGT
1 GCATATCCACTTAGCACCACGTTACATGT
34797212 ATCAATATGC
Statistics
Matches: 106, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 106 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (85 bp):
GCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATG
AATCAATAAATGTAACCGTA
Found at i:34797238 original size:48 final size:48
Alignment explanation
Indices: 34797128--34797256 Score: 181
Period size: 48 Copynumber: 2.7 Consensus size: 48
34797118 ATTACATGTT
*
34797128 TAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATACG
* * *
34797175 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGCG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATACG
* *
34797223 TAATTC-TGGTATATCCACTTAGCACCATGTTACA
1 TAA-CCGTGGTATATCCACTTAGCACCACGTTACA
34797257 CCTATAACCG
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
47 31 0.42
48 41 0.56
49 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (48 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATACG
Found at i:34798549 original size:13 final size:13
Alignment explanation
Indices: 34798531--34798555 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34798521 GCCCAAACGT
34798531 CGAAATTTTCAAA
1 CGAAATTTTCAAA
34798544 CGAAATTTTCAA
1 CGAAATTTTCAA
34798556 TAAATCATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (13 bp):
CGAAATTTTCAAA
Found at i:34810676 original size:20 final size:20
Alignment explanation
Indices: 34810605--34810683 Score: 54
Period size: 20 Copynumber: 4.0 Consensus size: 20
34810595 TATGTTCTGC
34810605 TCTGCTCTACTTC-GTTTTGT
1 TCTGCTCTA-TTCTGTTTTGT
* * * *
34810625 TCTGTTTTCTTCTGTTATGT
1 TCTGCTCTATTCTGTTTTGT
* * *
34810645 TCTACACCATTC-GATTTTGT
1 TCTGCTCTATTCTG-TTTTGT
*
34810665 TCTGCTCTATTCTGATTTG
1 TCTGCTCTATTCTGTTTTG
34810684 CTTTGTTCTA
Statistics
Matches: 41, Mismatches: 15, Indels: 6
0.66 0.24 0.10
Matches are distributed among these distances:
19 4 0.10
20 36 0.88
21 1 0.02
ACGTcount: A:0.10, C:0.22, G:0.14, T:0.54
Consensus pattern (20 bp):
TCTGCTCTATTCTGTTTTGT
Found at i:34812259 original size:734 final size:734
Alignment explanation
Indices: 34809907--34814780 Score: 5510
Period size: 730 Copynumber: 6.7 Consensus size: 734
34809897 TCAGCTATGT
* * * * * * * *
34809907 TCTGCTCTGTACCATTCGGTTCTGTTTTGCTCTATTCTATTTTGTTTTTTTCTGTTGTAGTACCT
1 TCTGTTCTGTACCATTCGGTTTTGTTCTGCTCTATTCTGTTTTGCTTTGTTCTATTGTACTACCT
* * * *
34809972 TTGATTAAATCTCTGTGATACTCTAGAGTTG-CCTATAGTAGTTATGCAACTGCTATTCAA-TTA
66 TTGATTAAATCTCTGTGATACTCTAGAGTTGTCC-ATACTGGTTATACAACTGCTCTT-AAGTTA
* * * * * * *
34810035 TTTGCATTACTACGAGATATATAGTATGTTCTATTTATTTGTATTTGAGCTTGGTTTTACGCAGT
129 TTTGCGTTACTACGAGTTATATAGTATGCTCTACTTATTTGTATTTGAGCCTGGTTATACGCGGT
* * * * * *
34810100 GCTTGGTAACCCACCATTTGTCTTACCTTCATCTATTCATTAAAACATCTTATTTAGGATCGAAT
194 GCTTGGTAACTCACCATTTGTCTTACCTTCATCTGTTCAGTAAAACATCTGATTTAGGATCGGAC
* * * * * *
34810165 GTCGTA-TAGAAGCTCGGAATTTTTTTTGCACT-AACATAATTGCAAACTGATCTTTTGGGTTTG
259 ATCGTACGAG-AGCTCGG-A-TTGTTTTACACTGAA-ATAACTGCAAATTGATCTTTTGGGTTTG
* * * * * *** *
34810228 TAAATTATCTTAGATTTCCCTTACTTTCCTTTTGATAATCTCATCCACATTAGCCAATTTCTAAC
320 TAAATTGTCTTGGATTTGCCTTGCTTTCCTTTTGATAATCTCGTCTGTATTAGTCAATTTCTAAC
* * *
34810293 ACGAAGCTACAAAATCACCTAAATCGAAAAATATGAATTTCTGGCTTTTCAAAATTAAAATCCCA
385 ACGAAACTACAAAATCACCTAAATCGAAAAAAATGAATTTCTGG-TTTTCAAAATTAAAATCCCG
* * * * *
34810358 AAAAGATATCAGTTTTAAATGCATTGGTGTAACTTGTCCAAGTTCGGCTTAAACCT-C---T-GG
449 AAAAGAAATCAGTTTTCAATGCATTGGTGTAACTCGTCCAAGTTCGGCTTAAACTTCCAAGTCAG
34810418 GTTTGGGGTGTTACATTTAGTGGTATCAACCCGAGATGACTTTCTT-GATGTGTTTTGGATGGAT
514 GTTTGGGGTGTTACATTTAGTGGTATCAACCCGA-ATGACTTTCTTAG-TGTGTTTTGGATGGAT
*** * * * * *
34810482 GAGTTCAAAGGAGAACTCTATTTTTATGTGTAACGGAATTTGGAAAGACTATTTCTAATAAATCT
577 GAGTTCGGGGGAGAACTCTATTTTTGTGTGTAACGGAGTTTGGGAAGACTGTTTCTGATAAATCT
* * * *
34810547 GCCTTCAAATCTGTTTGAAAAATACTGCACCTGCATAAACATACATGTTATGTTCTGCTCTGCTC
642 GCATTCTAATCTATTTGAAAAATACTGCACCTGCATAAACATACATGTTATGTTCTGCTCTACTC
*** * * *** *
34810612 TACTTCGTTTTGTTCTGTTTTCTTCTGT
707 CGTTTTGTTCTGTTCTGTTCAGTTCTGC
* ** * * *
34810640 TATGTTCTACACCATTCGATTTTGTTCTGCTCTATTCTGATTTGCTTTGTTCTATTGTATTACCT
1 TCTGTTCTGTACCATTCGGTTTTGTTCTGCTCTATTCTGTTTTGCTTTGTTCTATTGTACTACCT
* * **
34810705 TTGATTAAATCTCTGTGATACACTAGAGTTGTCCCTACTGACTATACAACTGCTCTTAAGTTATT
66 TTGATTAAATCTCTGTGATACTCTAGAGTTGTCCATACTGGTTATACAACTGCTCTTAAGTTATT
* * *
34810770 TGCGTTACTACGAGTCATATAGTATGCTCTGCTTATTTGTATTTGAGCCTGGTTATACGCAGTGC
131 TGCGTTACTACGAGTTATATAGTATGCTCTACTTATTTGTATTTGAGCCTGGTTATACGCGGTGC
* * * * * * **
34810835 TTGGTAACTCACCATTTGTCTTACTTTCATCTAG-TCGGAAAAATACCTGATTTAGGATCAGATG
196 TTGGTAACTCACCATTTGTCTTACCTTCATCT-GTTCAGTAAAACATCTGATTTAGGATCGGACA
** * * * * * *
34810899 GGGTATGGGAGCTCGAATTGTTTTATACTGAAATAACTGCGAATTGTTCTTTTGGGTTTGTAAAT
260 TCGTACGAGAGCTCGGATTGTTTTACACTGAAATAACTGCAAATTGATCTTTTGGGTTTGTAAAT
* * * * *
34810964 TTTCTTGGATTTGCCTTGCTTTCCTTTTGATAATGTCGTTTGTATCAGTCAATTTCTAACATGAA
325 TGTCTTGGATTTGCCTTGCTTTCCTTTTGATAATCTCGTCTGTATTAGTCAATTTCTAACACGAA
* *
34811029 ACTACAAAATCACCTAAATCG-ACAAAATGAATTTCTGGTTTTCAAGATTAAAATCCCGAGAAA-
390 ACTACAAAATCACCTAAATCGAAAAAAATGAATTTCTGGTTTTCAAAATTAAAATCCCGA-AAAG
* * * *
34811092 AACTCAATTTTCAATGCTTTGGTGTAACTCATCCAAGTTCGGCTTAAACTTCCAAGTCTA-GTTT
454 AAATCAGTTTTCAATGCATTGGTGTAACTCGTCCAAGTTCGGCTTAAACTTCCAAGTC-AGGTTT
* *
34811156 GGGGTGTTACATTTAGTGGTATCAACCCAGGATGACTTTCTTA--GTGTTTTAGATGGATGAGTT
518 GGGGTGTTACATTTAGTGGTATCAACCC-GAATGACTTTCTTAGTGTGTTTTGGATGGATGAGTT
* * *
34811219 CGGGGGAG-ACTCTATTTTTATGTGTAACGGAGTTTTGGAAGACTGTTTCTGATAAATCTGTATT
582 CGGGGGAGAACTCTATTTTTGTGTGTAACGGAGTTTGGGAAGACTGTTTCTGATAAATCTGCATT
* * *** * * * * *
34811283 CTGATCTATTTGAAAAATACTGCTCCCATATAAACTTACATGTTCTATTCTGCTCTGCTTCGTTT
647 CTAATCTATTTGAAAAATACTGCACCTGCATAAACATACATGTTATGTTCTGCTCTACTCCGTTT
34811348 TGTTCTGTTCTGTTCAGTTCTGC
712 TGTTCTGTTCTGTTCAGTTCTGC
* *
34811371 TC-GCTCTGTACCATTCGGTTTTGTTCTGCTCTATTCTGTTTTGCTTTGTTCTATTGCACTACCT
1 TCTGTTCTGTACCATTCGGTTTTGTTCTGCTCTATTCTGTTTTGCTTTGTTCTATTGTACTACCT
* * ** * * *
34811435 TTGATAAAATCTCTGTGATACTCTAGAGTTGACCGCACTAGATATACAACTGCTTTTCAA-TTAT
66 TTGATTAAATCTCTGTGATACTCTAGAGTTGTCCATACTGGTTATACAACTGCTCTT-AAGTTAT
* *
34811499 TTGCATTACTACGAGTTATATAGTATGCTCTATTTATTTGTATTTGAGCCTGGTTATACGCGGTG
130 TTGCGTTACTACGAGTTATATAGTATGCTCTACTTATTTGTATTTGAGCCTGGTTATACGCGGTG
* * *
34811564 CTTGGTAACTCACCATTTGTC-TACCTTCATTTGTTCAGTAAAACACCTGATTTAGGATTGGACA
195 CTTGGTAACTCACCATTTGTCTTACCTTCATCTGTTCAGTAAAACATCTGATTTAGGATCGGACA
* * * * *
34811628 TCGTACGAGAGCTCGGATTGTTTTACACTAAAATAACTACGAACTGGTCTTTTGGGTTTGTAAAT
260 TCGTACGAGAGCTCGGATTGTTTTACACTGAAATAACTGCAAATTGATCTTTTGGGTTTGTAAAT
* *
34811693 TGTCTTGGATTTGCCTTGCTTTCCTTTCT-ATAATCTTGTCTGTTTTAGTCAATTTCTAACACGA
325 TGTCTTGGATTTGCCTTGCTTTCCTTT-TGATAATCTCGTCTGTATTAGTCAATTTCTAACACGA
* * * *
34811757 AGCTACAAAATCACCTAAATTGAAAAAAATGAATTTTTGGTTTTCAAAATTAAAATCTCGAAAAG
389 AACTACAAAATCACCTAAATCGAAAAAAATGAATTTCTGGTTTTCAAAATTAAAATCCCGAAAAG
* * * * ** *
34811822 AAATCAGTTTTAAATGCAGTAGTGTAACTCGTCCAAGTTAGAATTAAACTTCCAAGTCAAGTTTG
454 AAATCAGTTTTCAATGCATTGGTGTAACTCGTCCAAGTTCGGCTTAAACTTCCAAGTCAGGTTTG
* * * * * *
34811887 AGGTGTTACATTTAGTGGTATCAACCTCGAATGACTGTCTTGGTATGTTTTAGATGGATTAGTTC
519 GGGTGTTACATTTAGTGGTATCAACC-CGAATGACTTTCTTAGTGTGTTTTGGATGGATGAGTTC
* * *
34811952 GTGGAAGAACTCTATTTTTTGTGTGTAACAGAGTTTGGGAAGACTGTTTCTGATAAATCTGCATT
583 GGGGGAGAACTCTA-TTTTTGTGTGTAACGGAGTTTGGGAAGACTGTTTCTGATAAATCTGCATT
* * * * * *
34812017 -TAATCTGTTTGAAAAGTACTGCACCTGCATAAACAGACATGTTCTATTCTGCTCTACTCCTTTT
647 CTAATCTATTTGAAAAATACTGCACCTGCATAAACATACATGTTATGTTCTGCTCTACTCCGTTT
* *
34812081 TGTTCTGTTCTGTTCAGTTATAC
712 TGTTCTGTTCTGTTCAGTTCTGC
* * * *
34812104 TCTGTTCTATACCATTTGGTTTTGTTCTGCTATATTCTGTTTTCCTTTGTTCTATTGTACTACCT
1 TCTGTTCTGTACCATTCGGTTTTGTTCTGCTCTATTCTGTTTTGCTTTGTTCTATTGTACTACCT
* *
34812169 TTGATTTAATCTCTGTGATACTCTAGAGTTGTCCATACTGGTTATACAATTGCTCTTAAGTTATT
66 TTGATTAAATCTCTGTGATACTCTAGAGTTGTCCATACTGGTTATACAACTGCTCTTAAGTTATT
* * * *
34812234 TGTGTTACTACTAGTTATATAGTATGCTCTGCTTATTTGTATTTGAGCCTGGTTGTACGCGGTGC
131 TGCGTTACTACGAGTTATATAGTATGCTCTACTTATTTGTATTTGAGCCTGGTTATACGCGGTGC
* * * * * * *
34812299 TTCGTAACTCACCCTTTGTCTTACATTTATCTATTCGAG-AAAGCATCTGATTTAGGATCGGATG
196 TTGGTAACTCACCATTTGTCTTACCTTCATCTGTTC-AGTAAAACATCTGATTTAGGATCGGA-C
** ** **
34812363 A-CAAACTCGAGCTCGGATTGTTTT---C--AAATAACTGTTAATTGATCTTTTGGGTTTGTAAA
259 ATCGTACGAGAGCTCGGATTGTTTTACACTGAAATAACTGCAAATTGATCTTTTGGGTTTGTAAA
* * * * *
34812422 TTGTGTTAGATTTGCCTTGCTTTTCTTTTGATAATCTCGTCTATATCAGTCAATTTCTAACACGA
324 TTGTCTTGGATTTGCCTTGCTTTCCTTTTGATAATCTCGTCTGTATTAGTCAATTTCTAACACGA
* * * *
34812487 AACTACAAAATCACCCAAATCGAAAAAAACT-AATTTCTCGTTTTCAAAATTAAAATCTCAAAAA
389 AACTACAAAATCACCTAAATCGAAAAAAA-TGAATTTCTGGTTTTCAAAATTAAAATCCCGAAAA
* * * * *
34812551 GAAACCAGTTTTCAATGTATTGGTGTAACTTGTCCAAGTTCGGCTTAAATTTCCAAGTCTGGTTT
453 GAAATCAGTTTTCAATGCATTGGTGTAACTCGTCCAAGTTCGGCTTAAACTTCCAAGTCAGGTTT
*
34812616 GGGGTGTCACATTTAGTGGTAT-AACCCGAGATGACTTTCTTAGTGTGTTTTGGATGGATGAGTT
518 GGGGTGTTACATTTAGTGGTATCAACCCGA-ATGACTTTCTTAGTGTGTTTTGGATGGATGAGTT
* * * * *
34812680 CGAGGAAGAACTCTA-TTTTGTGTGTAAC-GATGTTTGAGATGACTGTTTCTGATAAATCCGCAT
582 CGGGGGAGAACTCTATTTTTGTGTGTAACGGA-GTTTGGGAAGACTGTTTCTGATAAATCTGCAT
*
34812743 TCTGATCTATTTGAAAAATACTGCACCTGCATAAACATACATGTTATGTTCTGCTCTACTCCGTT
646 TCTAATCTATTTGAAAAATACTGCACCTGCATAAACATACATGTTATGTTCTGCTCTACTCCGTT
* *
34812808 TTGTTCTATTCTGTTGAGTTCTGC
711 TTGTTCTGTTCTGTTCAGTTCTGC
* * *
34812832 TCTGCTCTGTACCATTCGGTTTTGTTCTGCTCTATTCTGTTTTGCTTAGTTCTATTGTACGACCT
1 TCTGTTCTGTACCATTCGGTTTTGTTCTGCTCTATTCTGTTTTGCTTTGTTCTATTGTACTACCT
* * * *
34812897 TTGATTAAATCTCTGTGATACTCTAGTGTTGTCTGA-ATTGGTTATACAACTGCTCTTCAGTTAT
66 TTGATTAAATCTCTGTGATACTCTAGAGTTGTC-CATACTGGTTATACAACTGCTCTTAAGTTAT
* * *
34812961 TTGCATTACTACGAGTTATATAGTATGCTCTATTTATTTGTATTTGAGCCTGGTTATACGCGATG
130 TTGCGTTACTACGAGTTATATAGTATGCTCTACTTATTTGTATTTGAGCCTGGTTATACGCGGTG
* * * * * *
34813026 CTTGGTAACTCACCCTTTTTC-TAACTTCATCTATTTAGTAAAACATCTGATTTAGGATCGGACG
195 CTTGGTAACTCACCATTTGTCTTACCTTCATCTGTTCAGTAAAACATCTGATTTAGGATCGGACA
* * * * *
34813090 TCGTACGGGAGCTCGAATTGTTTTACACTGAAATAACTACGAACT-AGTCTTTTGGGTTTGTAAA
260 TCGTACGAGAGCTCGGATTGTTTTACACTGAAATAACTGCAAATTGA-TCTTTTGGGTTTGTAAA
* * * *
34813154 TTGTCTTGGATTTACCTTGCTTTCCTTTTGATAATCTTGTCCGTATTAGTCAATTTCTAACAAGA
324 TTGTCTTGGATTTGCCTTGCTTTCCTTTTGATAATCTCGTCTGTATTAGTCAATTTCTAACACGA
* * * *
34813219 AGCTACAAAATCACCAAAATTGAAAAAAACGAATTTCTGGTTTTCAAAATTAAAATCCCGAAAAG
389 AACTACAAAATCACCTAAATCGAAAAAAATGAATTTCTGGTTTTCAAAATTAAAATCCCGAAAAG
* * * * * *
34813284 AAATCTGCTTTAAATGCATTGGTGTAACTCGTCCAAGTTCTGCTTAAACTTCCAGGTTAGGTTTG
454 AAATCAGTTTTCAATGCATTGGTGTAACTCGTCCAAGTTCGGCTTAAACTTCCAAGTCAGGTTTG
* * * ** * *
34813349 GGGTGTTATATTGAGTGGTATTAACCCCGGGTGACTTTCTTAGTGTGTTTTGGATGGATTAGTTT
519 GGGTGTTACATTTAGTGGTATCAA-CCCGAATGACTTTCTTAGTGTGTTTTGGATGGATGAGTTC
** *
34813414 GGGGGAGAACTCTATTTTTGTGTGTAACAAAGTTT-GGAATGACTGTTTCTAATAAATCTGCATT
583 GGGGGAGAACTCTATTTTTGTGTGTAACGGAGTTTGGGAA-GACTGTTTCTGATAAATCTGCATT
*
34813478 CTAATCTATCT-AAAAAGTACTGCACCTGCATAAACATAC-----ATG---T--T-T--T--GTT
647 CTAATCTATTTGAAAAA-TACTGCACCTGCATAAACATACATGTTATGTTCTGCTCTACTCCGTT
* *
34813527 TTG--C---TCTG--C--TCCTTC
711 TTGTTCTGTTCTGTTCAGTTCTGC
* * * *
34813542 T-TGTTCTGTACCATTCGGTTTTGTTCTTCTCTATTCTGTTTTGCTTTCTTCTGTTGTACTCCCT
1 TCTGTTCTGTACCATTCGGTTTTGTTCTGCTCTATTCTGTTTTGCTTTGTTCTATTGTACTACCT
* *
34813606 TTGATTAAATCTCTGTGATACTCTAGAGTTGTCCATACTGGTTATACAGCTACTCTTAAGTTATT
66 TTGATTAAATCTCTGTGATACTCTAGAGTTGTCCATACTGGTTATACAACTGCTCTTAAGTTATT
* * * *
34813671 TGCGTTACTACTAG-T-TATAGTATACTCTACTTATTTGTATTTGAGCCTGGTTGTACGCGGTAC
131 TGCGTTACTACGAGTTATATAGTATGCTCTACTTATTTGTATTTGAGCCTGGTTATACGCGGTGC
* * *
34813734 TTGGTAACTCACCTTTTGTCTTACCTTCATCCGTTCGAG-AAAACATCTGATTTAGGATCAGACA
196 TTGGTAACTCACCATTTGTCTTACCTTCATCTGTTC-AGTAAAACATCTGATTTAGGATCGGACA
* * * *
34813798 GCATACTG-GAGCTCGGATTGTTTTACACTGAAATAACTGTAAATTGATCTTTTGTGTTTGTAAA
260 TCGTAC-GAGAGCTCGGATTGTTTTACACTGAAATAACTGCAAATTGATCTTTTGGGTTTGTAAA
* * * * * *
34813862 TTGTCTTGGATTTGACTTGCTTTTCTTTTGATAATCTCATTTGTATCAGCCAATTTCTAACACGA
324 TTGTCTTGGATTTGCCTTGCTTTCCTTTTGATAATCTCGTCTGTATTAGTCAATTTCTAACACGA
* * ** * *
34813927 AACTAAAAAATCACCTAAATAGAAAAAAACAAATTAT-TGGTTTTTAAGATTAAAATCCCGAAAA
389 AACTACAAAATCACCTAAATCGAAAAAAATGAATT-TCTGGTTTTCAAAATTAAAATCCCGAAAA
* * * * * * *
34813991 GAAATC-GGTTTCAATGTATTGTTGTAACTCGTCCAAGTT-AGCTTAAACTTTCAGGTCGGGTTT
453 GAAATCAGTTTTCAATGCATTGGTGTAACTCGTCCAAGTTCGGCTTAAACTTCCAAGTCAGGTTT
* * * * * *
34814054 AGGGCGTTACATTTAGTGGGATCAACCCGGGATGACTTTCTTGGTGTGTTTTGTATGGATGAGTT
518 GGGGTGTTACATTTAGTGGTATCAACCC-GAATGACTTTCTTAGTGTGTTTTGGATGGATGAGTT
* * *
34814119 TGGGGGAGAACTCTATTTTTGTGTTTAACGGAGTTTGGGAAGACTGTTTCTGATAAATCTCCATT
582 CGGGGGAGAACTCTATTTTTGTGTGTAACGGAGTTTGGGAAGACTGTTTCTGATAAATCTGCATT
* * * * * * *
34814184 TTGATATGTTTGAAAAATACTGCACCTACATAAACAGACATGTTTTGTTCTGCTCTACTCCGTTT
647 CTAATCTATTTGAAAAATACTGCACCTGCATAAACATACATGTTATGTTCTGCTCTACTCCGTTT
*
34814249 TGTTCTTTTCTGTTCAGTTCTGC
712 TGTTCTGTTCTGTTCAGTTCTGC
* *
34814272 TCTGCTT-TGTACCATTCGGTTTTGTTCTG--C--TT-TG---TAC------C-ATTCG--GT--
1 TCTG-TTCTGTACCATTCGGTTTTGTTCTGCTCTATTCTGTTTTGCTTTGTTCTATT-GTACTAC
* * * * * * *
34814317 -TTTGATTAAATATCTATGATACTCTTGTGTTGTCCGTACTGGTTATACAACTACTGTTAAGTTA
64 CTTTGATTAAATCTCTGTGATACTCTAGAGTTGTCCATACTGGTTATACAACTGCTCTTAAGTTA
* * * * * *
34814381 TTTGCGTTACTACCAATTATATAGTATGCTCTGCTTATTTATATTTGAGCCTGGTTGTACGCGAT
129 TTTGCGTTACTACGAGTTATATAGTATGCTCTACTTATTTGTATTTGAGCCTGGTTATACGCGGT
* * * * *
34814446 GCTTGGTAACTCACCCTTTGTCTTACCTTCATCTGTAT-GGGAAAAGATCTGATTCAGGATCAGG
194 GCTTGGTAACTCACCATTTGTCTTACCTTCATCTGT-TCAGTAAAACATCTGATTTAGGATC-GG
* *
34814510 -CGA-CATAC-AGGAGCTCGGATTGTTTTACACTGAAATAACTGCAAATTGATCTTTCGGGTTTG
257 AC-ATCGTACGA-GAGCTCGGATTGTTTTACACTGAAATAACTGCAAATTGATCTTTTGGGTTTG
* *
34814572 TAAATTGTCTTGGATTTGCCTTGCTTTCCTTTTGATAATTTCGTCCGTATTAGTCAATTTCTAAC
320 TAAATTGTCTTGGATTTGCCTTGCTTTCCTTTTGATAATCTCGTCTGTATTAGTCAATTTCTAAC
* * * ** *
34814637 ATGAAACTACAAAATCACCTAAATCGATAAAAATAAATTTCTTATTTTCAAAATTAAAATCTCGA
385 ACGAAACTACAAAATCACCTAAATCGAAAAAAATGAATTTCTGGTTTTCAAAATTAAAATCCCGA
* * ** * * * * *
34814702 AAAAAAATCAATTTTCAATGTGTTGGTGTAACTCGTCTAAATTCGACTTAAACTTCCAAGCCAAG
450 AAAGAAATCAGTTTTCAATGCATTGGTGTAACTCGTCCAAGTTCGGCTTAAACTTCCAAGTCAGG
*
34814767 TTTGGAGTGTTACA
515 TTTGGGGTGTTACA
34814781 CAAAGCATTC
Statistics
Matches: 3523, Mismatches: 520, Indels: 213
0.83 0.12 0.05
Matches are distributed among these distances:
705 3 0.00
706 152 0.04
707 99 0.03
708 204 0.06
709 130 0.04
710 5 0.00
711 2 0.00
712 71 0.02
713 3 0.00
714 271 0.08
715 31 0.01
716 28 0.01
717 4 0.00
719 7 0.00
721 7 0.00
723 4 0.00
724 1 0.00
726 11 0.00
727 96 0.03
728 272 0.08
729 281 0.08
730 551 0.16
731 256 0.07
732 269 0.08
733 358 0.10
734 352 0.10
735 52 0.01
736 3 0.00
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.40
Consensus pattern (734 bp):
TCTGTTCTGTACCATTCGGTTTTGTTCTGCTCTATTCTGTTTTGCTTTGTTCTATTGTACTACCT
TTGATTAAATCTCTGTGATACTCTAGAGTTGTCCATACTGGTTATACAACTGCTCTTAAGTTATT
TGCGTTACTACGAGTTATATAGTATGCTCTACTTATTTGTATTTGAGCCTGGTTATACGCGGTGC
TTGGTAACTCACCATTTGTCTTACCTTCATCTGTTCAGTAAAACATCTGATTTAGGATCGGACAT
CGTACGAGAGCTCGGATTGTTTTACACTGAAATAACTGCAAATTGATCTTTTGGGTTTGTAAATT
GTCTTGGATTTGCCTTGCTTTCCTTTTGATAATCTCGTCTGTATTAGTCAATTTCTAACACGAAA
CTACAAAATCACCTAAATCGAAAAAAATGAATTTCTGGTTTTCAAAATTAAAATCCCGAAAAGAA
ATCAGTTTTCAATGCATTGGTGTAACTCGTCCAAGTTCGGCTTAAACTTCCAAGTCAGGTTTGGG
GTGTTACATTTAGTGGTATCAACCCGAATGACTTTCTTAGTGTGTTTTGGATGGATGAGTTCGGG
GGAGAACTCTATTTTTGTGTGTAACGGAGTTTGGGAAGACTGTTTCTGATAAATCTGCATTCTAA
TCTATTTGAAAAATACTGCACCTGCATAAACATACATGTTATGTTCTGCTCTACTCCGTTTTGTT
CTGTTCTGTTCAGTTCTGC
Found at i:34814300 original size:25 final size:25
Alignment explanation
Indices: 34814272--34814320 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
34814262 TCAGTTCTGC
34814272 TCTGCTTTGTACCATTCGGTTTTGT
1 TCTGCTTTGTACCATTCGGTTTTGT
34814297 TCTGCTTTGTACCATTCGGTTTTG
1 TCTGCTTTGTACCATTCGGTTTTG
34814321 ATTAAATATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.08, C:0.20, G:0.20, T:0.51
Consensus pattern (25 bp):
TCTGCTTTGTACCATTCGGTTTTGT
Found at i:34815164 original size:27 final size:27
Alignment explanation
Indices: 34815133--34815190 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
34815123 TCATCAAATC
34815133 ATTACTGTTTTAAAATTTAGTTTAATA
1 ATTACTGTTTTAAAATTTAGTTTAATA
34815160 ATTACTGTTTTAAAATTTAGTTTAATA
1 ATTACTGTTTTAAAATTTAGTTTAATA
34815187 ATTA
1 ATTA
34815191 TGTACGATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.38, C:0.03, G:0.07, T:0.52
Consensus pattern (27 bp):
ATTACTGTTTTAAAATTTAGTTTAATA
Found at i:34816733 original size:26 final size:25
Alignment explanation
Indices: 34816704--34816763 Score: 63
Period size: 23 Copynumber: 2.5 Consensus size: 25
34816694 AGGGTGGGTT
34816704 TTTGGTTTTTTGGAGGAGGATTGTTC
1 TTTGGTTTTTTGGAGGAGG-TTGTTC
* *
34816730 TTT-G--TTTTGGAGGAGGTTTTTT
1 TTTGGTTTTTTGGAGGAGGTTGTTC
*
34816752 TTTGTTTTTTTG
1 TTTGGTTTTTTG
34816764 AGGTGTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
22 7 0.25
23 12 0.43
25 6 0.21
26 3 0.11
ACGTcount: A:0.08, C:0.02, G:0.30, T:0.60
Consensus pattern (25 bp):
TTTGGTTTTTTGGAGGAGGTTGTTC
Found at i:34816758 original size:22 final size:23
Alignment explanation
Indices: 34816711--34816759 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
34816701 GTTTTTGGTT
34816711 TTTTGGAGGAGGATTGTTCTTTG
1 TTTTGGAGGAGGATTGTTCTTTG
* *
34816734 TTTTGGAGGAGG-TTTTTTTTTG
1 TTTTGGAGGAGGATTGTTCTTTG
34816756 TTTT
1 TTTT
34816760 TTTGAGGTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 12 0.50
23 12 0.50
ACGTcount: A:0.10, C:0.02, G:0.31, T:0.57
Consensus pattern (23 bp):
TTTTGGAGGAGGATTGTTCTTTG
Found at i:34816760 original size:23 final size:23
Alignment explanation
Indices: 34816710--34816785 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 23
34816700 GGTTTTTGGT
* *
34816710 TTTTTGGAGGAGGATTGTTCTTTG
1 TTTTTGGAGGAGG-TTTTTTTTTG
34816734 -TTTTGGAGGAGGTTTTTTTTTG
1 TTTTTGGAGGAGGTTTTTTTTTG
* * *
34816756 TTTTTTTGAGGTGTTTTTTTTTTTG
1 -TTTTTGGAGGAG-GTTTTTTTTTG
34816781 TTTTT
1 TTTTT
34816786 TTGGAAAGAA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
22 8 0.18
23 12 0.27
24 14 0.32
25 10 0.23
ACGTcount: A:0.08, C:0.01, G:0.26, T:0.64
Consensus pattern (23 bp):
TTTTTGGAGGAGGTTTTTTTTTG
Found at i:34819603 original size:19 final size:19
Alignment explanation
Indices: 34819581--34819627 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
34819571 CTTCCTTTCT
34819581 TTTGCATT-CATTCCATACA
1 TTTGCATTACATTCCA-ACA
*
34819600 TTTGCATTACATTGCAACA
1 TTTGCATTACATTCCAACA
34819619 TTTGCATTA
1 TTTGCATTA
34819628 AACTTTCACT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.43
Consensus pattern (19 bp):
TTTGCATTACATTCCAACA
Found at i:34822427 original size:6 final size:6
Alignment explanation
Indices: 34822416--34822451 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
34822406 GGAGTTATAT
34822416 GGCAAA GGCAAA GGCAAA GGCAAA GGCAAA GGCAAA
1 GGCAAA GGCAAA GGCAAA GGCAAA GGCAAA GGCAAA
34822452 AAAAAACACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.50, C:0.17, G:0.33, T:0.00
Consensus pattern (6 bp):
GGCAAA
Found at i:34823742 original size:66 final size:66
Alignment explanation
Indices: 34823642--34823768 Score: 209
Period size: 66 Copynumber: 1.9 Consensus size: 66
34823632 CATTCATATA
* *
34823642 ATAACACATCTAGTTAAGATCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACACATT
1 ATAACACATCTAGTTAAGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
34823707 C
66 C
* * *
34823708 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCGATCATATCATCCTAATCATTTGACA
1 ATAACACATCTAGTTAAGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACA
34823769 TAAGCATAGA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 56 1.00
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.37
Consensus pattern (66 bp):
ATAACACATCTAGTTAAGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
C
Found at i:34823993 original size:86 final size:87
Alignment explanation
Indices: 34823873--34824469 Score: 440
Period size: 87 Copynumber: 6.9 Consensus size: 87
34823863 AAAGATTTAC
* * * * * *
34823873 AGATCATAACCCCCTAAGTAGTAGGGAAACAGATCGAAGACGAAAGGTCTTAAACCCCTAATCGG
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAAGGTCTTAACCCCCTAAGCAG
34823938 TAGGGTAACAGATC-GAATTGT
66 TAGGGTAACAGATCTGAATTGT
* * *
34823959 AGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATG-AAGATCTTAACCCCCTAAGCAG
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAAGGTCTTAACCCCCTAAGCAG
* *
34824023 TAGGGAAACAGAT-TGAAGATG-
66 TAGGGTAACAGATCTGAA-TTGT
** * * * * *
34824044 ATGGGCTTTAACCCCCTAAGCAGTAGGGTAACA-AGCTAA-ATTTACAA-GCCTTAACCCCCTAA
1 A-GATC-TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGA-TGA-AAGGTCTTAACCCCCTAA
*
34824106 GCAGTAGGGTAACAG-GCTGAAGATT-T
62 GCAGTAGGGTAACAGATCTG-A-ATTGT
* * * **
34824132 ACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGAAGGGTCTTAAACCCCTAATT
1 --AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAAGGTCTTAACCCCCTAAGC
* *
34824197 GGTAGGGTAACAGA-CTGAATTGC
64 AGTAGGGTAACAGATCTGAATTGT
* * *
34824220 AGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATG-AAGATCTTAACCCCCTAAGCAG
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAAGGTCTTAACCCCCTAAGCAG
** * * *
34824284 TAGGAAAATAGATC-AAAGATG-
66 TAGGGTAACAGATCTGAA-TTGT
** * * * * * * *
34824305 ATGGGCTTTAACCCCCTAAGTAGTAGGGTAACA-AGCCAA-ATTTACAA-GCCTTAACGCCCTAA
1 A-GATC-TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGA-TGA-AAGGTCTTAACCCCCTAA
* *
34824367 GTAGTAGGGTAACAG-GCTGAAGATT-T
62 GCAGTAGGGTAACAGATCTG-A-ATTGT
* * * * *
34824393 ACAGATCTTAACCCCTTAAGCAGTAGGGAAACAGATCAAAGATG-ATGGGCTTTAACCCACTAAG
1 --AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAAGGTC-TTAACCCCCTAAG
34824457 CAGTAGGGTAACA
63 CAGTAGGGTAACA
34824470 AGCCAAATTT
Statistics
Matches: 393, Mismatches: 83, Indels: 67
0.72 0.15 0.12
Matches are distributed among these distances:
85 64 0.16
86 96 0.24
87 101 0.26
88 60 0.15
89 68 0.17
90 4 0.01
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.21
Consensus pattern (87 bp):
AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAAGGTCTTAACCCCCTAAGCAG
TAGGGTAACAGATCTGAATTGT
Found at i:34824020 original size:43 final size:44
Alignment explanation
Indices: 34823832--34824777 Score: 537
Period size: 43 Copynumber: 21.6 Consensus size: 44
34823822 ATTCATAAGC
* * * * *
34823832 CTTAAGCCCCTAAGCAATAGGGTAACAG-GCTAAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGACAGAT
* * * * * *
34823877 CATAACCCCCTAAGTAGTAGGGAAACAGATCGAAGACGAAAGGT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
* * * * *
34823921 CTTAAACCCCTAATCGGTAGGGTAACAGATCGAA-TTG-TAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
* * *
34823963 CTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGA-AGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
* * * **
34824006 CTTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGA-TGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
* * * *
34824049 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCTAA-ATTTACA-AGC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGA-TGACAGA-T
* *
34824093 CTTAACCCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGACAGAT
* * *
34824138 CTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGA-AGGGT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACA-GAT
* *** *
34824182 CTTAAACCCCTAATTGGTAGGGTAACAGA-CTGAA-TTG-CAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGATGACAGAT
* * *
34824224 CTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGA-AGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
** * * * **
34824267 CTTAACCCCCTAAGCAGTAGGAAAATAGATCAAAGATGA-TGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
* * * * *
34824310 CTTTAACCCCCTAAGTAGTAGGGTAACA-AGCCAA-ATTTACA-AGC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGA-TGACAGA-T
* * * *
34824354 CTTAACGCCCTAAGTAGTAGGGTAACAG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGACAGAT
* * * * **
34824399 CTTAACCCCTTAAGCAGTAGGGAAACAGATCAAAGATGA-TGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
* * * * *
34824442 CTTTAACCCACTAAGCAGTAGGGTAACA-AGCCAA-ATTTACA-AGC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGA-TGACAGA-T
* * * * * *
34824486 CTTAAACCCTTAAGAAGTAGGGTAACTGA-CTAAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGACAGAT
* ** * * **
34824531 CTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATGA-TGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
* * * * *
34824574 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCGAA-TTTACAAAC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGA-TCGAAGATGACAGAT
* * * *
34824618 CTTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAAAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGACAGAT
* * * * *
34824663 CTTAACCCCCTAACCAGTAGGGTAACAGGTTGAA-TTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
* * * * ** **
34824706 CTTAACCCCTTAAGCAGTTGGGAAATAGATCGAAGATGATGGGC
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
* *
34824750 CTTAAACCCCTAAGTAGTAGGGTAACAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAG
34824778 GCTGGAAATT
Statistics
Matches: 694, Mismatches: 162, Indels: 91
0.73 0.17 0.10
Matches are distributed among these distances:
42 62 0.09
43 256 0.37
44 199 0.29
45 171 0.25
46 6 0.01
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.21
Consensus pattern (44 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
Found at i:34824164 original size:132 final size:132
Alignment explanation
Indices: 34823828--34824690 Score: 1025
Period size: 132 Copynumber: 6.6 Consensus size: 132
34823818 GTGAATTCAT
* * * * *
34823828 AAGCCTTAAGCCCCTAAGCAATAGGGTAACAGGCTAAAGATTTACAGATCATAACCCCCTAAGTA
1 AAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCA
* * ** * * * * *
34823893 GTAGGGAAACAGATCGAAGACGAAAGG-TCTTAAACCCCTAATCGGTAGGGTAAC-AGATCGAAT
66 GTAGGGAAACAGATCAAAGATGATGGGCT-TTAACCCCCTAAGCAGTAGGGTAACAAG-CCAAAT
34823956 TGTA-
129 T-TAC
* * * * * * *
34823960 GA-TCTTATCTCCCTAAGCAGTAGGGAAACA-GATCGAAGA-TGA-AGATCTTAACCCCCTAAGC
1 AAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAGATCTTAACCCCCTAAGC
** *
34824021 AGTAGGGAAACAGATTGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCTAAATT
65 AGTAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATT
34824086 TAC
130 TAC
34824089 AAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCA
1 AAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCA
* * *** **
34824154 GTAGGGAAACAGATCAAAGATGAAGGG-TCTTAAACCCCTAATTGGTAGGGTAAC-AGACTGAA-
66 GTAGGGAAACAGATCAAAGATGATGGGCT-TTAACCCCCTAAGCAGTAGGGTAACAAG-CCAAAT
*
34824216 TTGC
129 TTAC
* * * * * *
34824220 -AGATCTTATCTCCCTAAGCAGTAGGGAAACA-GATCGAAGA-TGA-AGATCTTAACCCCCTAAG
1 AAG-CCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAGATCTTAACCCCCTAAG
* * *
34824281 CAGTAGGAAAATAGATCAAAGATGATGGGCTTTAACCCCCTAAGTAGTAGGGTAACAAGCCAAAT
64 CAGTAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAAT
34824346 TTAC
129 TTAC
* * *
34824350 AAGCCTTAACGCCCTAAGTAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCTTAAGCA
1 AAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCA
*
34824415 GTAGGGAAACAGATCAAAGATGATGGGCTTTAACCCACTAAGCAGTAGGGTAACAAGCCAAATTT
66 GTAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTT
34824480 AC
131 AC
* * * * * *
34824482 AAGCCTTAAACCCTTAAGAAGTAGGGTAACTGACTAAAGATTTACAGATCTTAACCCCCTAAGCA
1 AAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCA
* * *
34824547 GTAGGGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTT
66 GTAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTT
34824612 AC
131 AC
* * * *
34824614 AAACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAACCCCCTAACCA
1 AAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCA
*
34824679 GTAGGGTAACAG
66 GTAGGGAAACAG
34824691 GTTGAATTTA
Statistics
Matches: 626, Mismatches: 86, Indels: 38
0.83 0.11 0.05
Matches are distributed among these distances:
128 2 0.00
129 137 0.22
130 76 0.12
131 71 0.11
132 340 0.54
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (132 bp):
AAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCA
GTAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTT
AC
Found at i:34824305 original size:261 final size:261
Alignment explanation
Indices: 34823828--34824690 Score: 1225
Period size: 261 Copynumber: 3.3 Consensus size: 261
34823818 GTGAATTCAT
* * * * *
34823828 AAGCCTTAAGCCCCTAAGCAATAGGGTAACAGGCTAAAGATTTACAGATCATAACCCCCTAAGTA
1 AAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCA
* * *
34823893 GTAGGGAAACAGATCGAAGACGAAAGGTCTTAAACCCCTAATCGGTAGGGTAACAGA-TCGAATT
66 GTAGGGAAACAGATCAAAGATGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGACT-GAATT
*
34823957 GTAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCCCTAAGCA
130 GCAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCCCTAAGCA
** *
34824022 GTAGGGAAACAGATTGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCTAAATTT
195 GTAGGGAAACAGATAAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTT
34824087 AC
260 AC
34824089 AAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCA
1 AAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCA
*
34824154 GTAGGGAAACAGATCAAAGATGAAGGGTCTTAAACCCCTAATTGGTAGGGTAACAGACTGAATTG
66 GTAGGGAAACAGATCAAAGATGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGACTGAATTG
34824219 CAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCCCTAAGCAG
131 CAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCCCTAAGCAG
* * * *
34824284 TAGGAAAATAGATCAAAGATGATGGGCTTTAACCCCCTAAGTAGTAGGGTAACAAGCCAAATTTA
196 TAGGGAAACAGATAAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTA
34824349 C
261 C
* * *
34824350 AAGCCTTAACGCCCTAAGTAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCTTAAGCA
1 AAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCA
* * * * **
34824415 GTAGGGAAACAGATCAAAGATGATGGG-CTTTAACCCACTAAGCAGTAGGGTAACA-AGCCAAAT
66 GTAGGGAAACAGATCAAAGATGAAGGGTCTTAAACCC-CTAATCGGTAGGGTAACAGA-CTGAA-
* * * * * * * * *
34824478 TTACA-AGCCTTAAAC-CCTTAAGAAGTAGGGTAACTGA-CTAAAGATTTACAGATCTTAACCCC
128 TTGCAGA-TCTT-ATCTCCCTAAGCAGTAGGGAAACAGATC-GAAGA-TGA-AGATCTTAACCCC
*
34824540 CTAAGCAGTAGGGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGC
188 CTAAGCAGTAGGGAAACAGATAAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGC
*
34824605 CGAATTTAC
253 CAAATTTAC
* * * *
34824614 AAACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAACCCCCTAACCA
1 AAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCA
*
34824679 GTAGGGTAACAG
66 GTAGGGAAACAG
34824691 GTTGAATTTA
Statistics
Matches: 544, Mismatches: 49, Indels: 15
0.89 0.08 0.02
Matches are distributed among these distances:
260 9 0.02
261 351 0.65
262 30 0.06
263 4 0.01
264 150 0.28
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (261 bp):
AAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCA
GTAGGGAAACAGATCAAAGATGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGACTGAATTG
CAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCCCTAAGCAG
TAGGGAAACAGATAAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTA
C
Found at i:34824626 original size:88 final size:87
Alignment explanation
Indices: 34824002--34824776 Score: 288
Period size: 87 Copynumber: 8.9 Consensus size: 87
34823992 TCGAAGATGA
** *
34824002 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGGGCTTTAACCCCCTAAGCAG
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCAG
**
34824067 TAGGGTAACAAGCTAAATTTAC
66 TAGGGTAACAAGCCGAATTTAC
* * * * * * * ** *
34824089 A-AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTA-CAGATCTTAACCCCCTAAG
1 AGA-TCTTAACCCCCTAAGCAGTAGGGAAACA-GATAAAAAATGATGGGCT-TTAACCCCCTAAG
* * * * *
34824152 CAGTAGGGAAAC-AGATCAAAGATGA-
63 CAGTAGGGTAACAAG-CCGAA-TTTAC
* * *** * * * ** * *
34824177 AGGGTCTTAAACCCCTAATTGGTAGGGTAACAGACT--GAATTGCA-GATC-TTATCTCCCTAAG
1 A-GATCTTAACCCCCTAAGCAGTAGGGAAACAGA-TAAAAAATG-ATGGGCTTTAACCCCCTAAG
* * * *
34824238 CAGTAGGGAAAC-AGATCGAAGATGA-
63 CAGTAGGGTAACAAG-CCGAA-TTTAC
* * * * *
34824263 AGATCTTAACCCCCTAAGCAGTAGGAAAATAGATCAAAGATGATGGGCTTTAACCCCCTAAGTAG
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCAG
*
34824328 TAGGGTAACAAGCCAAATTTAC
66 TAGGGTAACAAGCCGAATTTAC
* * * * * * * * * ** * *
34824350 A-AGCCTTAACGCCCTAAGTAGTAGGGTAACAGGCTGAAGATTTA-CAGATCTTAACCCCTTAAG
1 AGA-TCTTAACCCCCTAAGCAGTAGGGAAACA-GATAAAAAATGATGGGCT-TTAACCCCCTAAG
* * * * *
34824413 CAGTAGGGAAAC-AGATCAAAGATGA-
63 CAGTAGGGTAACAAG-CCGAA-TTTAC
* ** * * *** * * *** * * * *
34824438 TGGGCTTTAACCCACTAAGCAGTAGGGTAACA-AGCCAAATTTACAAGCCTTAAACCCTTAAGAA
1 AGATC-TTAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCA
* **
34824502 GTAGGGTAAC-TGACTAAAGATTTAC
65 GTAGGGTAACAAG-C-CGA-ATTTAC
34824527 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCAG
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCAG
34824592 TAGGGTAACAAGCCGAATTTAC
66 TAGGGTAACAAGCCGAATTTAC
* * * * * * * * * **** *
34824614 AAACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTA-CAAATCTTAACCCCCTAACC
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACA-GATAAAAAATGATGGGCT-TTAACCCCCTAAGC
* **
34824678 AGTAGGGTAACAGGTTGAATTTAC
64 AGTAGGGTAACAAGCCGAATTTAC
* * * ** * * * *
34824702 AGATCTTAACCCCTTAAGCAGTTGGGAAATAGATCGAAGATGATGGGCCTTAAACCCCTAAGTAG
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCAG
34824767 TAGGGTAACA
66 TAGGGTAACA
34824777 GGCTGGAAAT
Statistics
Matches: 501, Mismatches: 156, Indels: 62
0.70 0.22 0.09
Matches are distributed among these distances:
84 1 0.00
85 25 0.05
86 45 0.09
87 177 0.35
88 167 0.33
89 85 0.17
90 1 0.00
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (87 bp):
AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCAG
TAGGGTAACAAGCCGAATTTAC
Found at i:34824912 original size:68 final size:69
Alignment explanation
Indices: 34824795--34824993 Score: 296
Period size: 68 Copynumber: 2.9 Consensus size: 69
34824785 ATTACAAATT
*
34824795 TCTTTT-TCCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGA
1 TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGA
**
34824859 -GGA
66 CAAA
* *
34824862 TCTTTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCA-A
1 TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGA
34824926 CAAA
66 CAAA
* * * *
34824930 CCTCTTCTTCCAGAAATGGCATTGGAGAGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG
1 TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG
34824994 TGGAAGAAGA
Statistics
Matches: 118, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
67 7 0.06
68 111 0.94
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.27
Consensus pattern (69 bp):
TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGA
CAAA
Found at i:34825211 original size:44 final size:43
Alignment explanation
Indices: 34825105--34825348 Score: 235
Period size: 44 Copynumber: 5.6 Consensus size: 43
34825095 GATTTCAGCA
* * * *
34825105 TGGCATCCCTGTACTTATAGGGAACAAGTTGAAGATTTTAGCA-
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAG-AT
*
34825148 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGA-T
* * * *
34825192 TGGCATCCCTGTGCTTATAGGGAAC-GGATCGAAGATAGCAGAT
1 TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAAATATCAGAT
* * * * * * *
34825235 CTGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAGCA-
1 -TGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ATATCAG-AT
*
34825280 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGA-T
34825324 TGGCATCCCTGTGCTTATAGGGAAC
1 TGGCATCCCTGTGCTTATAGGGAAC
34825349 GGATCGAAGA
Statistics
Matches: 162, Mismatches: 29, Indels: 19
0.77 0.14 0.09
Matches are distributed among these distances:
42 2 0.01
43 44 0.27
44 108 0.67
45 7 0.04
46 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (43 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGAT
Found at i:34825290 original size:88 final size:88
Alignment explanation
Indices: 34825046--34825340 Score: 305
Period size: 88 Copynumber: 3.4 Consensus size: 88
34825036 AGGAGCAGAC
*
34825046 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCCAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
*
34825111 CCCTGTACTTATAGGGAACAAGT
66 CCCTGTGCTTATAGGGAACAAGT
* *** * * * * * * **
34825134 TGAAGATTTTAG--CATGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ACATCAG-ATTTG
1 CGAAGATAGCAGATC-TGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAGCA--TG
*
34825194 GCATCCCTGTGCTTATAGGGAAC-GGAT
62 GCATCCCTGTGCTTATAGGGAACAAG-T
34825221 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
34825286 CCCTGTGCTTATAGGGAACAAGT
66 CCCTGTGCTTATAGGGAACAAGT
* * * * * * *
34825309 TGAAAACATCAGATTTGGCATCCCTGTGCTTA
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTA
34825341 TAGGGAACGG
Statistics
Matches: 161, Mismatches: 35, Indels: 22
0.74 0.16 0.10
Matches are distributed among these distances:
85 1 0.01
86 8 0.05
87 58 0.36
88 85 0.53
89 8 0.05
90 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (88 bp):
CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
CCCTGTGCTTATAGGGAACAAGT
Found at i:34825298 original size:132 final size:132
Alignment explanation
Indices: 34825136--34825404 Score: 511
Period size: 132 Copynumber: 2.0 Consensus size: 132
34825126 GAACAAGTTG
*
34825136 AAGATTTTAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCC
1 AAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCC
*
34825201 TGTGCTTATAGGGAACGGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGAT
66 TGTGCTTATAGGGAACGGATCGAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGCAGAT
34825266 CA
131 CA
34825268 AAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCC
1 AAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCC
*
34825333 TGTGCTTATAGGGAACGGATCGAAGATAGCAAATTTGACATTCCTGTGCTTACAGTGAAGCAGAT
66 TGTGCTTATAGGGAACGGATCGAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGCAGAT
34825398 CA
131 CA
34825400 AAGAT
1 AAGAT
34825405 AGCGGATATC
Statistics
Matches: 134, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
132 134 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (132 bp):
AAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCC
TGTGCTTATAGGGAACGGATCGAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGCAGAT
CA
Found at i:34825369 original size:44 final size:43
Alignment explanation
Indices: 34825046--34825407 Score: 214
Period size: 44 Copynumber: 8.2 Consensus size: 43
34825036 AGGAGCAGAC
* * * * *
34825046 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGAT
1 CGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA-C-GAT
* ** * *
34825091 CCAAGATTTCAGCA--TGGCATCCCTGTACTTATAGGGAACAAGT
1 CGAAGATAGCAG-ATTTGGCATCCCTGTGCTTATAGGGAACGA-T
* *** *
34825134 TGAAGATTTTAGCA--TGGCATCCCTGTGCTTATAGGGAACAAGT
1 CGAAGATAGCAG-ATTTGGCATCCCTGTGCTTATAGGGAACGA-T
* * * *
34825177 TGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACGGAT
1 CGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAAC-GAT
* * * * *
34825221 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGAT
1 CGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA-C-GAT
* ** *
34825266 CAAAGATTTCAGCA--TGGCATCCCTGTGCTTATAGGGAACAAGT
1 CGAAGATAGCAG-ATTTGGCATCCCTGTGCTTATAGGGAACGA-T
* * * *
34825309 TGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACGGAT
1 CGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAAC-GAT
* * * * *
34825353 CGAAGATAGCAAATTTGACATTCCTGTGCTTACAGTGAAGCAGAT
1 CGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA-C-GAT
*
34825398 CAAAGATAGC
1 CGAAGATAGC
34825408 GGATATCGCC
Statistics
Matches: 252, Mismatches: 53, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
42 4 0.02
43 58 0.23
44 151 0.60
45 37 0.15
46 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (43 bp):
CGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAACGAT
Found at i:34825916 original size:23 final size:22
Alignment explanation
Indices: 34825865--34825941 Score: 75
Period size: 23 Copynumber: 3.4 Consensus size: 22
34825855 GGGTTTTTGG
* *
34825865 TTTTTTGGAGGAGGATTGTTCTT
1 TTTTTTGGAGGAGG-TTTTTTTT
*
34825888 TGTTTTGGAGGAGGTTTTTTTT
1 TTTTTTGGAGGAGGTTTTTTTT
*
34825910 CTTTTTTGGAGG-TGTTTTTTTGT
1 -TTTTTTGGAGGAGGTTTTTTT-T
*
34825933 TTTTCTGGA
1 TTTTTTGGA
34825942 AAGAAGGTTG
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
22 22 0.48
23 24 0.52
ACGTcount: A:0.09, C:0.04, G:0.29, T:0.58
Consensus pattern (22 bp):
TTTTTTGGAGGAGGTTTTTTTT
Found at i:34825922 original size:20 final size:22
Alignment explanation
Indices: 34825897--34825941 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
34825887 TTGTTTTGGA
34825897 GGAGGT-TTTTTTTCTTTTT-T
1 GGAGGTGTTTTTTTCTTTTTCT
*
34825917 GGAGGTGTTTTTTTGTTTTTCT
1 GGAGGTGTTTTTTTCTTTTTCT
34825939 GGA
1 GGA
34825942 AAGAAGGTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.27
21 12 0.55
22 4 0.18
ACGTcount: A:0.07, C:0.04, G:0.27, T:0.62
Consensus pattern (22 bp):
GGAGGTGTTTTTTTCTTTTTCT
Found at i:34825936 original size:22 final size:22
Alignment explanation
Indices: 34825858--34825941 Score: 71
Period size: 22 Copynumber: 3.7 Consensus size: 22
34825848 AGGGGGTGGG
* **
34825858 TTTTTGGTTTTTTGGAGGAGGA
1 TTTTTGTTTTTTTGGAGGAGTT
* *
34825880 TTGTTCTTTGTTTTGGAGGAGGTT
1 TTTTTGTTT-TTTTGGAGGA-GTT
*
34825904 TTTTT-TCTTTTTTGGAGGTGTT
1 TTTTTGT-TTTTTTGGAGGAGTT
*
34825926 TTTTTGTTTTTCTGGA
1 TTTTTGTTTTTTTGGA
34825942 AAGAAGGTTG
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
22 22 0.44
23 21 0.42
24 7 0.14
ACGTcount: A:0.08, C:0.04, G:0.29, T:0.60
Consensus pattern (22 bp):
TTTTTGTTTTTTTGGAGGAGTT
Found at i:34826283 original size:3 final size:3
Alignment explanation
Indices: 34826269--34826354 Score: 60
Period size: 3 Copynumber: 29.3 Consensus size: 3
34826259 GAGCTTTGTT
* *
34826269 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
34826313 TT- TCTCA TGTA TATA TTA TT- TT- TTA -TA TTA TTA TTA -TA TTA T
1 TTA T-T-A T-TA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
34826355 ATATGCCCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 12 0.18
3 48 0.71
4 6 0.09
5 2 0.03
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:34826311 original size:18 final size:18
Alignment explanation
Indices: 34826269--34826358 Score: 83
Period size: 18 Copynumber: 4.7 Consensus size: 18
34826259 GAGCTTTGTT
*
34826269 TTATTATTTTATTATTTTTA
1 TTATTA-TTTA-TATTATTA
*
34826289 CTATTATTTATATTATTA
1 TTATTATTTATATTATTA
*
34826307 TTATTATTTCTCATGTATATA
1 TTATTATTTAT-AT-TAT-TA
*
34826328 TTATTTTTTATATTATTA
1 TTATTATTTATATTATTA
34826346 TTA-TATTATATAT
1 TTATTATT-TATAT
34826359 GCCCTCTCCA
Statistics
Matches: 59, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
17 3 0.05
18 26 0.44
19 9 0.15
20 10 0.17
21 11 0.19
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (18 bp):
TTATTATTTATATTATTA
Found at i:34826596 original size:18 final size:19
Alignment explanation
Indices: 34826560--34826616 Score: 66
Period size: 17 Copynumber: 3.1 Consensus size: 19
34826550 ACTATTACTA
*
34826560 TTATATATTAGTGTATATTT
1 TTATATA-TAGTATATATTT
*
34826580 TTATGTATA-TATATA-TT
1 TTATATATAGTATATATTT
34826597 TTATATATAGTAT-TATTT
1 TTATATATAGTATATATTT
34826615 TT
1 TT
34826617 TATTACTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
17 12 0.38
18 12 0.38
19 2 0.06
20 6 0.19
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (19 bp):
TTATATATAGTATATATTT
Found at i:34826718 original size:12 final size:12
Alignment explanation
Indices: 34826701--34826730 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
34826691 GTATTTCTAT
34826701 TATATACATATA
1 TATATACATATA
*
34826713 TATATACATTTA
1 TATATACATATA
34826725 TATATA
1 TATATA
34826731 GTATTATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (12 bp):
TATATACATATA
Found at i:34827844 original size:14 final size:14
Alignment explanation
Indices: 34827825--34827865 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
34827815 TAAAAATTAA
34827825 AAATAATTTAATAT
1 AAATAATTTAATAT
*
34827839 AAATAA--T-ATTT
1 AAATAATTTAATAT
34827850 AAATAATTTAATAT
1 AAATAATTTAATAT
34827864 AA
1 AA
34827866 TTCTACATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 6
0.73 0.07 0.20
Matches are distributed among these distances:
11 9 0.41
12 1 0.05
13 1 0.05
14 11 0.50
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATAATTTAATAT
Found at i:34827866 original size:35 final size:35
Alignment explanation
Indices: 34827814--34827889 Score: 86
Period size: 35 Copynumber: 2.2 Consensus size: 35
34827804 ACACATGATG
*
34827814 TTAAA-AATTAAAAATAATT-TA-ATATAAATAATAT
1 TTAAATAATTAAAAATAATTCTACATA-ATAT-ATAT
* *
34827848 TTAAATAATTTAATATAATTCTACATAATATATAT
1 TTAAATAATTAAAAATAATTCTACATAATATATAT
34827883 TTAAATA
1 TTAAATA
34827890 TTTTTTTATG
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
34 5 0.14
35 23 0.64
36 5 0.14
37 3 0.08
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (35 bp):
TTAAATAATTAAAAATAATTCTACATAATATATAT
Found at i:34832159 original size:22 final size:21
Alignment explanation
Indices: 34832129--34832169 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
34832119 AGATTATTGT
*
34832129 TATTGTTATTAAATTATAATAG
1 TATTATTATTAAA-TATAATAG
34832151 TATTATTATTAAATATAAT
1 TATTATTATTAAATATAAT
34832170 TTAATAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (21 bp):
TATTATTATTAAATATAATAG
Found at i:34832188 original size:26 final size:27
Alignment explanation
Indices: 34832157--34832236 Score: 78
Period size: 26 Copynumber: 3.1 Consensus size: 27
34832147 ATAGTATTAT
34832157 TATTAAATATAATTTAATAATAAATAA
1 TATTAAATATAATTTAATAATAAATAA
* * *
34832184 T-TT-AATCATATTTTAAT-ATAATTAT
1 TATTAAAT-ATAATTTAATAATAAATAA
* *
34832209 TATTAAATACAAATTAATAA-AAATAA
1 TATTAAATATAATTTAATAATAAATAA
34832235 TA
1 TA
34832237 ATTTTCATTT
Statistics
Matches: 41, Mismatches: 8, Indels: 9
0.71 0.14 0.16
Matches are distributed among these distances:
25 10 0.24
26 26 0.63
27 5 0.12
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (27 bp):
TATTAAATATAATTTAATAATAAATAA
Found at i:34834397 original size:9 final size:9
Alignment explanation
Indices: 34834386--34834417 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
34834376 TTTGCATCAT
*
34834386 TTTCTCTTT
1 TTTCTCTTA
34834395 TTTCTCTTA
1 TTTCTCTTA
34834404 TTTCTCTTA
1 TTTCTCTTA
34834413 TTTCT
1 TTTCT
34834418 TGACAGCAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.72
Consensus pattern (9 bp):
TTTCTCTTA
Found at i:34838412 original size:8 final size:8
Alignment explanation
Indices: 34838399--34838425 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
34838389 AACACAGGAC
34838399 CTCCAACA
1 CTCCAACA
34838407 CTCCAACA
1 CTCCAACA
34838415 CTCCAACA
1 CTCCAACA
34838423 CTC
1 CTC
34838426 TACTTAACCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.33, C:0.52, G:0.00, T:0.15
Consensus pattern (8 bp):
CTCCAACA
Found at i:34839702 original size:27 final size:27
Alignment explanation
Indices: 34839664--34839715 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
34839654 AATACCCAAA
* * *
34839664 ATAAATGCCTTATTATAGTAAAAATCC
1 ATAAAGGCCTTATTACAATAAAAATCC
34839691 ATAAAGGCCTTATTACAATAAAAAT
1 ATAAAGGCCTTATTACAATAAAAAT
34839716 ACCCAAAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.48, C:0.13, G:0.08, T:0.31
Consensus pattern (27 bp):
ATAAAGGCCTTATTACAATAAAAATCC
Found at i:34841599 original size:46 final size:46
Alignment explanation
Indices: 34841537--34841659 Score: 210
Period size: 46 Copynumber: 2.7 Consensus size: 46
34841527 TACATTTCAC
*
34841537 GAACTCGGACTCAACTCAATGAGTTCGGATGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAGT
* **
34841583 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAGT
34841629 GAACTCGGACTCAACTCAACGAGTTCGGATG
1 GAACTCGGACTCAACTCAACGAGTTCGGATG
34841660 CCCAAAAGGT
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAGT
Found at i:34843092 original size:27 final size:27
Alignment explanation
Indices: 34843062--34843118 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
34843052 ATACTTCTCA
*
34843062 TAGGGGCATAACAGTCATTTTATCAAC
1 TAGGGGCATAACAGCCATTTTATCAAC
*
34843089 TAGGGGCATAATAGCCATTTTATCAAC
1 TAGGGGCATAACAGCCATTTTATCAAC
34843116 TAG
1 TAG
34843119 AGGGTCTAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (27 bp):
TAGGGGCATAACAGCCATTTTATCAAC
Found at i:34850814 original size:26 final size:27
Alignment explanation
Indices: 34850785--34850838 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
34850775 ACTTCTCATA
*
34850785 AGGG-CATAATAGTCATTTTATCAACT
1 AGGGTCATAATAGCCATTTTATCAACT
34850811 AGGGTCATAATAGCCATTTTATCAACT
1 AGGGTCATAATAGCCATTTTATCAACT
34850838 A
1 A
34850839 AGAGGTCTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 4 0.15
27 22 0.85
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (27 bp):
AGGGTCATAATAGCCATTTTATCAACT
Found at i:34857612 original size:8 final size:8
Alignment explanation
Indices: 34857599--34857627 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
34857589 AACATAGGAC
34857599 CTCCAACA
1 CTCCAACA
34857607 CTCCAACA
1 CTCCAACA
34857615 CTCCAACA
1 CTCCAACA
34857623 CTCCA
1 CTCCA
34857628 CTTAACCACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.52, G:0.00, T:0.14
Consensus pattern (8 bp):
CTCCAACA
Found at i:34873857 original size:13 final size:13
Alignment explanation
Indices: 34873839--34873873 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
34873829 ATGTCTACAT
*
34873839 GCATATGGTCATA
1 GCATATGGCCATA
34873852 GCATATGGCCATA
1 GCATATGGCCATA
*
34873865 GCATTTGGC
1 GCATATGGC
34873874 TCATTTTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (13 bp):
GCATATGGCCATA
Found at i:34887359 original size:15 final size:15
Alignment explanation
Indices: 34887339--34887395 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
34887329 CGATGAATTT
34887339 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
34887354 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
34887369 ATTGAATTTATATTG
1 ATTGAATTTATATTG
34887384 ATTGAA-TTATAT
1 ATTGAATTTATAT
34887396 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:34887797 original size:23 final size:23
Alignment explanation
Indices: 34887767--34887853 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
34887757 GCTTTATCGA
* *
34887767 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
34887790 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
34887811 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
34887833 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
34887854 ACTGATCAGG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
21 35 0.64
22 2 0.04
23 18 0.33
ACGTcount: A:0.15, C:0.22, G:0.25, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:34889969 original size:37 final size:36
Alignment explanation
Indices: 34889919--34889992 Score: 121
Period size: 37 Copynumber: 2.0 Consensus size: 36
34889909 GTCGTCATAT
*
34889919 GACATGGTATATGACTGATAGAAAATAAACATGATGA
1 GACATGGTATATGACTAATAGAAAAT-AACATGATGA
*
34889956 GACATGGTATATGACTAATAGGAAATAACATGATGA
1 GACATGGTATATGACTAATAGAAAATAACATGATGA
34889992 G
1 G
34889993 GTGACAAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
36 11 0.31
37 24 0.69
ACGTcount: A:0.45, C:0.08, G:0.23, T:0.24
Consensus pattern (36 bp):
GACATGGTATATGACTAATAGAAAATAACATGATGA
Found at i:34895722 original size:29 final size:32
Alignment explanation
Indices: 34895649--34895716 Score: 93
Period size: 34 Copynumber: 2.1 Consensus size: 32
34895639 TCTCTCCCTT
*
34895649 CTTCATATTTCAATTTGTGAATACAGTTTCTC
1 CTTCATCTTTCAATTTGTGAATACAGTTTCTC
34895681 CTTTTCCATCTTTCAATTTGT-AATACAGTTTCTC
1 C--TT-CATCTTTCAATTTGTGAATACAGTTTCTC
34895715 CT
1 CT
34895717 GTCTTTAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
32 2 0.06
34 16 0.50
35 14 0.44
ACGTcount: A:0.22, C:0.22, G:0.07, T:0.49
Consensus pattern (32 bp):
CTTCATCTTTCAATTTGTGAATACAGTTTCTC
Found at i:34901446 original size:32 final size:30
Alignment explanation
Indices: 34901410--34901473 Score: 76
Period size: 32 Copynumber: 2.1 Consensus size: 30
34901400 TTAATAAAAC
*
34901410 TAAAATTGTACTTTAA-CTTCCTCTAAAAATAA
1 TAAAATTGTAATTTAATCTT--T-TAAAAATAA
*
34901442 TAAAATTTTAATTTAATCTTTTAAAAATAA
1 TAAAATTGTAATTTAATCTTTTAAAAATAA
34901472 TA
1 TA
34901474 TTTTTACTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 11 0.38
31 1 0.03
32 14 0.48
33 3 0.10
ACGTcount: A:0.47, C:0.09, G:0.02, T:0.42
Consensus pattern (30 bp):
TAAAATTGTAATTTAATCTTTTAAAAATAA
Found at i:34907604 original size:33 final size:33
Alignment explanation
Indices: 34907562--34907627 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 33
34907552 TACACTTTTT
*
34907562 AAATAATTTTAATGA-TTTTT-AATTTTTTAAAA
1 AAATAATTTTAATAATTTTTTGAA-TTTTTAAAA
*
34907594 AAATATATTTTTATAATTTTTTGAATTTTTAAAA
1 AAATA-ATTTTAATAATTTTTTGAATTTTTAAAA
34907628 TTTTTAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 5 0.17
33 8 0.28
34 14 0.48
35 2 0.07
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (33 bp):
AAATAATTTTAATAATTTTTTGAATTTTTAAAA
Found at i:34907773 original size:15 final size:15
Alignment explanation
Indices: 34907739--34907783 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
34907729 AAGTGAATTG
* *
34907739 ATAAAAAATACAAAT
1 ATAAAAAATAAAAAA
* *
34907754 TTAAAAACTAAAAAA
1 ATAAAAAATAAAAAA
34907769 ATAAAAAATAAAAAA
1 ATAAAAAATAAAAAA
34907784 TGATTAAAAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.78, C:0.04, G:0.00, T:0.18
Consensus pattern (15 bp):
ATAAAAAATAAAAAA
Found at i:34912713 original size:17 final size:17
Alignment explanation
Indices: 34912674--34912705 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
34912664 TTACTTTAGC
34912674 TATTTTGATTTTTATTG
1 TATTTTGATTTTTATTG
34912691 TATTTT-ATTTTTATT
1 TATTTTGATTTTTATT
34912706 CTTATTTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.75
Consensus pattern (17 bp):
TATTTTGATTTTTATTG
Found at i:34916129 original size:45 final size:45
Alignment explanation
Indices: 34916079--34916184 Score: 140
Period size: 45 Copynumber: 2.4 Consensus size: 45
34916069 TAGCAGTAGA
* * **
34916079 AGTAACAGCAACAGTATTCAACACACAAAATGCTGAATTTGTAAC
1 AGTAACTGTAACAGTATTCAACACACAAAATGCTGAATCAGTAAC
* * * *
34916124 AGTAACTGTAACAGTATTCGACACACAAAGTGTTGAATCAGTAAT
1 AGTAACTGTAACAGTATTCAACACACAAAATGCTGAATCAGTAAC
34916169 AGTAACTGTAACAGTA
1 AGTAACTGTAACAGTA
34916185 ACAGTAGTCG
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 53 1.00
ACGTcount: A:0.42, C:0.17, G:0.16, T:0.25
Consensus pattern (45 bp):
AGTAACTGTAACAGTATTCAACACACAAAATGCTGAATCAGTAAC
Found at i:34917201 original size:18 final size:19
Alignment explanation
Indices: 34917174--34917211 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
34917164 AAATCTCTAG
34917174 TTTTTCCTTT-TCCTTTTTC
1 TTTTTCCTTTCT-CTTTTTC
34917193 TTTTT-CTTTCTCTTTTTC
1 TTTTTCCTTTCTCTTTTTC
34917211 T
1 T
34917212 CCCTTGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTTCCTTTCTCTTTTTC
Done.