Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56482370
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1659275 characters in sequence are not A, C, G, or T
File 110 of 172
Found at i:36964713 original size:16 final size:16
Alignment explanation
Indices: 36964692--36964757 Score: 114
Period size: 16 Copynumber: 4.1 Consensus size: 16
36964682 TGGTTCGCTA
36964692 TATTGGATTAGAGGTG
1 TATTGGATTAGAGGTG
36964708 TATTGGATTAGAGGTG
1 TATTGGATTAGAGGTG
*
36964724 TAATGGATTAGAGGTG
1 TATTGGATTAGAGGTG
*
36964740 TATTGGAATAGAGGTG
1 TATTGGATTAGAGGTG
36964756 TA
1 TA
36964758 ATAGCAAATC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.29, C:0.00, G:0.36, T:0.35
Consensus pattern (16 bp):
TATTGGATTAGAGGTG
Found at i:36964797 original size:45 final size:41
Alignment explanation
Indices: 36964738--36964847 Score: 116
Period size: 45 Copynumber: 2.6 Consensus size: 41
36964728 GGATTAGAGG
*
36964738 TGTATTGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGG-T
* * ***
36964780 GAATGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGT
1 ---TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
36964823 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
36964848 TAATGGAAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
39 20 0.36
40 2 0.04
43 1 0.02
44 11 0.20
45 22 0.39
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (41 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
Found at i:36965149 original size:167 final size:167
Alignment explanation
Indices: 36964861--36965172 Score: 583
Period size: 167 Copynumber: 1.9 Consensus size: 167
36964851 TGGAAAAAAC
36964861 TAAAATGACTAGAATACCCTTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTA
1 TAAAATGACTAGAATACCCTTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTA
*
36964926 AATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATT
66 AATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATAATTAAACATAATTATTATT
36964991 AAATATATTATAATTTAATAAAATTCTTAATATTAAA
131 AAATATATTATAATTTAATAAAATTCTTAATATTAAA
36965028 TAAAATGACTAGAATACCCTTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTA
1 TAAAATGACTAGAATACCCTTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTA
36965093 AATTTTAATAAGATTATTAATATCAATAATAAATAATTTAAAT-ATAAATT-AACATAATTATTA
66 AATTTTAATAAGATTATTAATATCAATAATAAATAATTT-AATCAT-AATTAAACATAATTATTA
36965156 TTAAATATATTATAATT
129 TTAAATATATTATAATT
36965173 AAAATATATA
Statistics
Matches: 142, Mismatches: 1, Indels: 4
0.97 0.01 0.03
Matches are distributed among these distances:
167 136 0.96
168 6 0.04
ACGTcount: A:0.44, C:0.05, G:0.06, T:0.44
Consensus pattern (167 bp):
TAAAATGACTAGAATACCCTTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTA
AATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATAATTAAACATAATTATTATT
AAATATATTATAATTTAATAAAATTCTTAATATTAAA
Found at i:36965188 original size:14 final size:15
Alignment explanation
Indices: 36965139--36965190 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
36965129 TTTAAATATA
36965139 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
36965154 TATTAAATATATTAT
1 AATTAAATATATTAT
36965169 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
36965182 AATTTAATA
1 AATTAAATA
36965191 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:36975212 original size:48 final size:48
Alignment explanation
Indices: 36975145--36975559 Score: 348
Period size: 48 Copynumber: 8.7 Consensus size: 48
36975135 TATGTCTGTT
* * **
36975145 AGTGTAAGACCATGTTTGGAACATGGCGTCGGCTACAATATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGATATGAGAGCC
* * * * * *
36975193 AATGTAAGACCACGCTTGGAACATGGCATCGACAATGTTATAAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGATATGAGAGCC
* * * * * * * * *
36975241 GGTGTAAGAACATCTCTGGGACATGGCATCGGCATTGATATGTGCGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGATATGAGAGCC
* * * * * * *
36975289 AGTGTAAGACCATATTTGGAACATGGCGTCAGCCA-CAAATGAGAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGATATGAGAGCC
*
36975336 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGATATGAGAGCC
* * * * *** * *
36975384 AGTGTAAGACCATGTCTGGGACATGGAATCAGTGTTGATATGAGCGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGATATGAGAGCC
* * * * * * *
36975432 AGTGTAAGATCATGTCTGGGACATGGCATCGGTATTGAGATGAGAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGATATGAGAGCC
* * * * * *
36975480 AGTGTAAGACCATATCTGGGACATGGCATCGGC-CTCGACATGGGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAAT-GATATGAGAGCC
* *
36975528 AGTGTAAGACCATGTCTGGGACATGGCATCGG
1 AGTGTAAGACCATGTTTGGAACATGGCATCGG
36975560 TAAGTTACCC
Statistics
Matches: 295, Mismatches: 70, Indels: 4
0.80 0.19 0.01
Matches are distributed among these distances:
47 40 0.14
48 255 0.86
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGATATGAGAGCC
Found at i:36975483 original size:191 final size:190
Alignment explanation
Indices: 36975144--36975559 Score: 505
Period size: 191 Copynumber: 2.2 Consensus size: 190
36975134 ATATGTCTGT
* *
36975144 TAGTGTAAGACCATGTTTGGAACATGGCGTCGGCTACAATATGAGAGCCAATGTAAGACCACGCT
1 TAGTGTAAGACCATGTTTGGAACATGGCATCGGCAACAATATGAGAGCCAATGTAAGACCACGCT
* *
36975209 TGGAACATGGCATCGACAATGTTATAAGAGCCGGTGTAAGAACATCTCTGGGACATGGCATCGGC
66 TGGAACATGGAAT--ACAATGTTATAAGAGCCAGTGTAAGAACATCTCTGGGACATGGCATCGGC
* * * * *
36975274 ATTGATATGTGCGCTAGTGTAAGACCATATTTGGAACATGGCGTCAGCCAC-AAATGAGAGC
129 ATTGAGATGAGAGCTAGTGTAAGACCATATCTGGAACATGGCATCAGCCACGAAATGAGAGC
*** * *
36975335 TAGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCCAGTGTAAGACCATG-T
1 TAGTGTAAGACCATGTTTGGAACATGGCATCGGCAACAATATGAGAGCCAATGTAAGACCACGCT
* * * * *
36975399 CTGGGACATGGAAT-CAGTGTTGATATGAGCGCTAGTGTAAGATCATGTCTGGGACATGGCATCG
66 -TGGAACATGGAATACAATGTT-ATAAGAGC-C-AGTGTAAGAACATCTCTGGGACATGGCATCG
* * * * * *
36975463 GTATTGAGATGAGAGCTAGTGTAAGACCATATCTGGGACATGGCATCGGCCTCGACATGGGAGC
127 GCATTGAGATGAGAGCTAGTGTAAGACCATATCTGGAACATGGCATCAGCCACGAAATGAGAGC
* * *
36975527 CAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 TAGTGTAAGACCATGTTTGGAACATGGCATCGG
36975560 TAAGTTACCC
Statistics
Matches: 192, Mismatches: 28, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
188 6 0.03
189 7 0.04
190 2 0.01
191 139 0.72
192 38 0.20
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (190 bp):
TAGTGTAAGACCATGTTTGGAACATGGCATCGGCAACAATATGAGAGCCAATGTAAGACCACGCT
TGGAACATGGAATACAATGTTATAAGAGCCAGTGTAAGAACATCTCTGGGACATGGCATCGGCAT
TGAGATGAGAGCTAGTGTAAGACCATATCTGGAACATGGCATCAGCCACGAAATGAGAGC
Found at i:36975535 original size:144 final size:143
Alignment explanation
Indices: 36975144--36975553 Score: 421
Period size: 143 Copynumber: 2.9 Consensus size: 143
36975134 ATATGTCTGT
* * * * * * * **
36975144 TAGTGTAAGACCATGTTTGGAACATGGCGTCGGCTACAATATGAGAGCCAATGTAAGACCA-CGC
1 TAGTGTAAGACCATATCTGGAACATGGCATCAGCCACAA-ATGAGAGCTAGTGTAAGACCATATC
* ** * * * * * *
36975208 TTGGAACATGGCATCGACAATGTTATAAGAGCCGGTGTAAGAACATCTCTGGGACATGGCATCGG
65 -TGGAACATGGCATCGGCAATGACATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGAATCAG
*
36975273 CATTGATATGTGCGC
129 CATTGATATGAGCGC
* * * *
36975288 TAGTGTAAGACCATATTTGGAACATGGCGTCAGCCACAAATGAGAGCTAGTGTAAGACCATGTTT
1 TAGTGTAAGACCATATCTGGAACATGGCATCAGCCACAAATGAGAGCTAGTGTAAGACCATATCT
** **
36975353 GGAACATGGCATCGGCAATGTTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGAATCAGTG
66 GGAACATGGCATCGGCAATGACATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGAATCAGCA
36975418 TTGATATGAGCGC
131 TTGATATGAGCGC
* * * ** * *
36975431 TAGTGTAAGATCATGTCTGGGACATGGCATC-GGTATTGAGATGAGAGCTAGTGTAAGACCATAT
1 TAGTGTAAGACCATATCTGGAACATGGCATCAGCCA--CAAATGAGAGCTAGTGTAAGACCATAT
* * *
36975495 CTGGGACATGGCATCGGC-CTCGACATGGGAGCCAGTGTAAGACCATGTCTGGGACATGG
64 CTGGAACATGGCATCGGCAAT-GACATGAGAGCCAGTGTAAGACCATGTCTGGGACATGG
36975554 CATCGGTAAG
Statistics
Matches: 228, Mismatches: 34, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
142 2 0.01
143 115 0.50
144 111 0.49
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.24
Consensus pattern (143 bp):
TAGTGTAAGACCATATCTGGAACATGGCATCAGCCACAAATGAGAGCTAGTGTAAGACCATATCT
GGAACATGGCATCGGCAATGACATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGAATCAGCA
TTGATATGAGCGC
Found at i:36985745 original size:71 final size:71
Alignment explanation
Indices: 36985668--36985810 Score: 268
Period size: 71 Copynumber: 2.0 Consensus size: 71
36985658 TAGATATGGA
*
36985668 ATCAATTGATCAAAATAGAAAGACGCAACTTAAGTACAATTAAATTCGTGGAGTTTTTAGACCAA
1 ATCAATTGAACAAAATAGAAAGACGCAACTTAAGTACAATTAAATTCGTGGAGTTTTTAGACCAA
36985733 TAGTCT
66 TAGTCT
*
36985739 ATCAATTGAACAAAATAGAAATACGCAACTTAAGTACAATTAAATTCGTGGAGTTTTTAGACCAA
1 ATCAATTGAACAAAATAGAAAGACGCAACTTAAGTACAATTAAATTCGTGGAGTTTTTAGACCAA
36985804 TAGTCT
66 TAGTCT
36985810 A
1 A
36985811 AATATCTAAA
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (71 bp):
ATCAATTGAACAAAATAGAAAGACGCAACTTAAGTACAATTAAATTCGTGGAGTTTTTAGACCAA
TAGTCT
Found at i:36987939 original size:48 final size:48
Alignment explanation
Indices: 36987798--36987962 Score: 226
Period size: 47 Copynumber: 3.5 Consensus size: 48
36987788 TTGAGATTCT
* * *
36987798 GTGTAAGACCATGTCTGGGA-ATGGCATCGGCGATGATTTGTGTGCCA
1 GTGTAAAACCATGTCTGGGACATGGCATCGGTGATGATATGTGTGCCA
* *
36987845 GTGTAAAACCGTGTCTGGGACAT-GCATCGGTGATGATATATGTGCCA
1 GTGTAAAACCATGTCTGGGACATGGCATCGGTGATGATATGTGTGCCA
* *
36987892 GTGTAAAACCATGTCTGGGACATGGCATCAGTGATGATATGTATGCCA
1 GTGTAAAACCATGTCTGGGACATGGCATCGGTGATGATATGTGTGCCA
* * *
36987940 GTGTAAGACCATATCTAGGACAT
1 GTGTAAAACCATGTCTGGGACAT
36987963 TGTAAGGCCC
Statistics
Matches: 104, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
47 61 0.59
48 43 0.41
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (48 bp):
GTGTAAAACCATGTCTGGGACATGGCATCGGTGATGATATGTGTGCCA
Found at i:36989570 original size:40 final size:40
Alignment explanation
Indices: 36989509--36989584 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
36989499 CGATACCTTG
*
36989509 TGGTGTGTAGGGTTGGATGGGTTGATTATATCCCCATACT
1 TGGTATGTAGGGTTGGATGGGTTGATTATATCCCCATACT
*
36989549 TGGTATGTAGGGTT-GAGTGGGTTGATTCTATCCCCA
1 TGGTATGTAGGGTTGGA-TGGGTTGATTATATCCCCA
36989585 CATGGTGTGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
39 2 0.06
40 31 0.94
ACGTcount: A:0.17, C:0.13, G:0.33, T:0.37
Consensus pattern (40 bp):
TGGTATGTAGGGTTGGATGGGTTGATTATATCCCCATACT
Found at i:36990921 original size:21 final size:21
Alignment explanation
Indices: 36990880--36990921 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
36990870 TTAGAGTTAT
* *
36990880 TAGAGTTTGACTGGGAAAAGA
1 TAGAGTTTAACTAGGAAAAGA
*
36990901 TAGAGTTTAACTAGGAGAAGA
1 TAGAGTTTAACTAGGAAAAGA
36990922 AACCCGATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.05, G:0.31, T:0.24
Consensus pattern (21 bp):
TAGAGTTTAACTAGGAAAAGA
Found at i:36991966 original size:30 final size:30
Alignment explanation
Indices: 36991930--36992021 Score: 87
Period size: 30 Copynumber: 3.0 Consensus size: 30
36991920 TATTAATTAT
36991930 TAATTTTTAAAAATTTATTTAATATTTTTA
1 TAATTTTTAAAAATTTATTTAATATTTTTA
* * * * *
36991960 TAATTTTTAATAATTTTTTTACAAACTTATA
1 TAATTTTTAAAAATTTATTTA-ATATTTTTA
*
36991991 -AATTTTTAAAAATATTACTTCTAATTTTTTT
1 TAATTTTTAAAAAT-TTA-TT-TAATATTTTT
36992022 TAGAAAAAAC
Statistics
Matches: 47, Mismatches: 11, Indels: 6
0.73 0.17 0.09
Matches are distributed among these distances:
30 31 0.66
31 8 0.17
32 6 0.13
33 2 0.04
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (30 bp):
TAATTTTTAAAAATTTATTTAATATTTTTA
Found at i:36991972 original size:10 final size:10
Alignment explanation
Indices: 36991930--36991977 Score: 55
Period size: 10 Copynumber: 4.8 Consensus size: 10
36991920 TATTAATTAT
36991930 TAATTTTTAA
1 TAATTTTTAA
*
36991940 AAATTTATTTAA
1 TAA-TT-TTTAA
36991952 T-ATTTTT-A
1 TAATTTTTAA
36991960 TAATTTTTAA
1 TAATTTTTAA
36991970 TAATTTTT
1 TAATTTTT
36991978 TTACAAACTT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
8 2 0.06
9 9 0.28
10 13 0.41
11 3 0.09
12 5 0.16
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
TAATTTTTAA
Found at i:36992408 original size:18 final size:19
Alignment explanation
Indices: 36992385--36992425 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
36992375 ATGTAAGATA
* *
36992385 ATTTTTATAAATTTATA-T
1 ATTTTTAAAAATTAATATT
36992403 ATTTTTAAAAATTAATATT
1 ATTTTTAAAAATTAATATT
36992422 ATTT
1 ATTT
36992426 ATTAGAACTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
ATTTTTAAAAATTAATATT
Found at i:36992420 original size:16 final size:18
Alignment explanation
Indices: 36992385--36992427 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
36992375 ATGTAAGATA
*
36992385 ATTTTTATAAATTTATAT
1 ATTTTTATAAAATTATAT
36992403 ATTTTTA-AAAATTA-AT
1 ATTTTTATAAAATTATAT
36992419 ATTATTTAT
1 ATT-TTTAT
36992428 TAGAACTTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 5 0.23
17 10 0.45
18 7 0.32
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
ATTTTTATAAAATTATAT
Found at i:36996218 original size:56 final size:56
Alignment explanation
Indices: 36996132--36996243 Score: 215
Period size: 56 Copynumber: 2.0 Consensus size: 56
36996122 AGGTTAATAT
*
36996132 TACCGATAGTGACTATTTTTTTTTCTTTGAAATACTAGTGCCTACACGTATATGGA
1 TACCGATAGTGACTATTCTTTTTTCTTTGAAATACTAGTGCCTACACGTATATGGA
36996188 TACCGATAGTGACTATTCTTTTTTCTTTGAAATACTAGTGCCTACACGTATATGGA
1 TACCGATAGTGACTATTCTTTTTTCTTTGAAATACTAGTGCCTACACGTATATGGA
36996244 GTGAGTACAG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (56 bp):
TACCGATAGTGACTATTCTTTTTTCTTTGAAATACTAGTGCCTACACGTATATGGA
Found at i:36999938 original size:17 final size:16
Alignment explanation
Indices: 36999901--36999935 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
36999891 ATGTTTTAGT
36999901 CAATATATTTTTCAAA
1 CAATATATTTTTCAAA
36999917 CAATATATTTTTCAAA
1 CAATATATTTTTCAAA
36999933 CAA
1 CAA
36999936 ATACGATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.14, G:0.00, T:0.40
Consensus pattern (16 bp):
CAATATATTTTTCAAA
Found at i:37000816 original size:22 final size:22
Alignment explanation
Indices: 37000791--37000848 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
37000781 TTCTATTATA
37000791 ATATTTGAATTAATAAATTAAT
1 ATATTTGAATTAATAAATTAAT
*
37000813 ATATTTGAATT-AT-ATTTAAT
1 ATATTTGAATTAATAAATTAAT
*
37000833 -TATTT-AAATAATAAAT
1 ATATTTGAATTAATAAAT
37000849 ATCATTATAC
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
18 3 0.10
19 7 0.23
20 8 0.26
21 2 0.06
22 11 0.35
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (22 bp):
ATATTTGAATTAATAAATTAAT
Found at i:37000864 original size:32 final size:30
Alignment explanation
Indices: 37000828--37000886 Score: 82
Period size: 32 Copynumber: 1.9 Consensus size: 30
37000818 TGAATTATAT
*
37000828 TTAATTATTTAAATAATAAATATCATTATACG
1 TTAATTATTGAAATAA-AAATAT-ATTATACG
*
37000860 TTAATTATTGAAATTAAAATATATTAT
1 TTAATTATTGAAATAAAAATATATTAT
37000887 TTAAAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 5 0.20
31 6 0.24
32 14 0.56
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (30 bp):
TTAATTATTGAAATAAAAATATATTATACG
Found at i:37008556 original size:17 final size:17
Alignment explanation
Indices: 37008536--37008569 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
37008526 CAAAAAAATA
37008536 TAAATATAAATATATTT
1 TAAATATAAATATATTT
* *
37008553 TAAATTTAAATTTATTT
1 TAAATATAAATATATTT
37008570 ATGTATTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TAAATATAAATATATTT
Found at i:37011599 original size:19 final size:19
Alignment explanation
Indices: 37011572--37011610 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
37011562 GAAGGAACTT
*
37011572 TATTTTATATAAA-AAAATA
1 TATTCTATA-AAATAAAATA
37011591 TATTCTATAAAATAAAATA
1 TATTCTATAAAATAAAATA
37011610 T
1 T
37011611 TAAAATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (19 bp):
TATTCTATAAAATAAAATA
Found at i:37011601 original size:17 final size:17
Alignment explanation
Indices: 37011579--37011611 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
37011569 CTTTATTTTA
37011579 TATAAAA-AAATATATTC
1 TATAAAATAAA-ATATTC
37011596 TATAAAATAAAATATT
1 TATAAAATAAAATATT
37011612 AAAATTTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (17 bp):
TATAAAATAAAATATTC
Found at i:37025442 original size:14 final size:14
Alignment explanation
Indices: 37025423--37025449 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37025413 AAATTTATTC
37025423 TTTTCTTTTCTTTT
1 TTTTCTTTTCTTTT
37025437 TTTTCTTTTCTTT
1 TTTTCTTTTCTTT
37025450 CTGTTTCATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTCTTTTCTTTT
Found at i:37025445 original size:6 final size:5
Alignment explanation
Indices: 37025420--37025449 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
37025410 CCTAAATTTA
37025420 TTCTT TTCTT TTCTT TT-TT TTCTT TTCTT T
1 TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT T
37025450 CTGTTTCATC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (5 bp):
TTCTT
Found at i:37025908 original size:21 final size:21
Alignment explanation
Indices: 37025882--37025923 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
37025872 TTGCATATGT
37025882 GTTGGATACTAAAGTATCTGA
1 GTTGGATACTAAAGTATCTGA
37025903 GTTGGATACTAAAGTATCTGA
1 GTTGGATACTAAAGTATCTGA
37025924 ACCAAAGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.10, G:0.24, T:0.33
Consensus pattern (21 bp):
GTTGGATACTAAAGTATCTGA
Found at i:37030245 original size:23 final size:25
Alignment explanation
Indices: 37030192--37030249 Score: 75
Period size: 23 Copynumber: 2.4 Consensus size: 25
37030182 TTTATGATTG
* * *
37030192 TCCTGACATAGGCTCTTTGTGAGCT
1 TCCTGATATAGGCTCTTTGTAAACT
37030217 TCCTGATAT-GGCTCTTT-TAAACT
1 TCCTGATATAGGCTCTTTGTAAACT
37030240 TCCTGATATA
1 TCCTGATATA
37030250 TGGCCATCCG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
23 13 0.45
24 8 0.28
25 8 0.28
ACGTcount: A:0.21, C:0.22, G:0.17, T:0.40
Consensus pattern (25 bp):
TCCTGATATAGGCTCTTTGTAAACT
Found at i:37033757 original size:49 final size:48
Alignment explanation
Indices: 37033704--37033807 Score: 122
Period size: 48 Copynumber: 2.1 Consensus size: 48
37033694 ATCCTTTGTG
37033704 AGACCATGTT-TGGGACATGGCATCGACAT-TTGAGATGAGAGCCAGTGTA
1 AGACCATGTTCT-GGACATGGCATC-A-ATGTTGAGATGAGAGCCAGTGTA
* * * * *
37033753 AGACCATGTTCTGTACATGGCATCAGTGTTGATATGTGTGCCAGTGTA
1 AGACCATGTTCTGGACATGGCATCAATGTTGAGATGAGAGCCAGTGTA
37033801 AGACCAT
1 AGACCAT
37033808 ATTTATGATA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
47 1 0.02
48 25 0.52
49 21 0.44
50 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (48 bp):
AGACCATGTTCTGGACATGGCATCAATGTTGAGATGAGAGCCAGTGTA
Found at i:37039046 original size:68 final size:69
Alignment explanation
Indices: 37038863--37039652 Score: 277
Period size: 69 Copynumber: 11.6 Consensus size: 69
37038853 TTTTCAGGCA
* * * * * * **
37038863 AAGAGCTGCAGCCTCCAACATAGCTAGCGAGAGCAAAGCTCTT-AGCTGTCATATTAAGGCTCAC
1 AAGAGCCGCAACCTCCAACATAGTTAGCGAGAGAAAAGCT-TTCAGTTGTCTTATTAAGGCTTGC
* *
37038927 AAGCG
65 AGGTG
* * * * *
37038932 AAGAGTCACATCCTCCAACATAGTTAGCGAGAGCAAAG-TTCCCAGTTGTCTTATTAAGGCTTGC
1 AAGAGCCGCAACCTCCAACATAGTTAGCGAGAGAAAAGCTT-TCAGTTGTCTTATTAAGGCTTGC
37038996 AGGTG
65 AGGTG
** * * * * *
37039001 AAG-GTTGCAACCTCCAACACAGTCAGTGAGAGTAAAGCTTTCAGTTGTCATATTAAGGCTTGCA
1 AAGAGCCGCAACCTCCAACATAGTTAGCGAGAGAAAAGCTTTCAGTTGTCTTATTAAGGCTTGCA
37039065 GGTG
66 GGTG
* **
37039069 AAGAGCCGCAACCTCCAACATAGTTACCGAGAGAAAAGC-TTCAGATTGT-TATATTAAGGCTCA
1 AAGAGCCGCAACCTCCAACATAGTTAGCGAGAGAAAAGCTTTCAG-TTGTCT-TATTAAGGCTTG
* *
37039132 AAGGCG
64 CAGGTG
* * * * * ** * ** * * ** *
37039138 AAGAGCTGTATCCTCCAACACAATTAATGAAACCAAAGCTTTCAGCTATCACATTAAGGCTTGTA
1 AAGAGCCGCAACCTCCAACATAGTTAGCGAGAGAAAAGCTTTCAGTTGTCTTATTAAGGCTTGCA
*
37039203 GGCG
66 GGTG
* * * * * ** * * *
37039207 AAGAGCCACAGCCTCCAACACAGTTAGTGAGACAAAA-AATCCTAGCTGT-TATATTAATGCTTG
1 AAGAGCCGCAACCTCCAACATAGTTAGCGAGAGAAAAGCTTTC-AGTTGTCT-TATTAAGGCTTG
* *
37039270 TACGTG
64 CAGGTG
* * * * * ** ** * * * ** *
37039276 AAAAGTCGCAGCATCCAACACAGTTAGC------AAAGCTCCCAACTGTCATACTAATGCTCACC
1 AAGAGCCGCAACCTCCAACATAGTTAGCGAGAGAAAAGCTTTCAGTTGTCTTATTAAGGCTTGCA
37039335 GGTG
66 GGTG
* ** ** * * *
37039339 AAGAGCCACAATTTCCAACATAGTTAGTAAGAG-TAAGAC-TTCTAGTTTTCATATTAAGGCTTG
1 AAGAGCCGCAACCTCCAACATAGTTAGCGAGAGAAAAG-CTTTC-AGTTGTCTTATTAAGGCTTG
* *
37039402 TAGGTA
64 CAGGTG
* * * ** * * ** * * *
37039408 AAGAGCCGCAACCTCCAACACAATTAGTGAGATTAAAGCTCTAAACTGTCATATTAAGGTTTACA
1 AAGAGCCGCAACCTCCAACATAGTTAGCGAGAGAAAAGCTTTCAGTTGTCTTATTAAGGCTTGCA
*
37039473 GGCG
66 GGTG
** * * * * * * *
37039477 AAGAGCTACAGCCTCCAACACAGTTAGTGAGAGCAAAGCTCTCAGTTGTCATACTAAGGCTTGCC
1 AAGAGCCGCAACCTCCAACATAGTTAGCGAGAGAAAAGCTTTCAGTTGTCTTATTAAGGCTTG-C
*
37039542 A-ATG
65 AGGTG
* * * * ** * ** *
37039546 AAGAGCCGCAGCTTCCAACACAATTAGAAAGAG-CAAGCTCCCAGTT-T-TATATTAAGGCTTGT
1 AAGAGCCGCAACCTCCAACATAGTTAGCGAGAGAAAAGCTTTCAGTTGTCT-TATTAAGGCTTGC
**
37039608 AGGCA
65 AGGTG
* * ** *
37039613 AAGAGCCGCAGCATCCAACATAGTTAATGAGAGTAAAGCT
1 AAGAGCCGCAACCTCCAACATAGTTAGCGAGAGAAAAGCT
37039653 CCTAACTATC
Statistics
Matches: 539, Mismatches: 157, Indels: 51
0.72 0.21 0.07
Matches are distributed among these distances:
63 40 0.07
64 2 0.00
66 1 0.00
67 40 0.07
68 84 0.16
69 361 0.67
70 11 0.02
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.23
Consensus pattern (69 bp):
AAGAGCCGCAACCTCCAACATAGTTAGCGAGAGAAAAGCTTTCAGTTGTCTTATTAAGGCTTGCA
GGTG
Found at i:37039124 original size:137 final size:137
Alignment explanation
Indices: 37038858--37039232 Score: 373
Period size: 137 Copynumber: 2.7 Consensus size: 137
37038848 TAAGATTTTC
* * * *
37038858 AGGCAAAGAGCTGCAGCCTCCAACATAG-CTAGCGAGAGCAAAGCTCTT-AGCTGTCATATTAAG
1 AGGCGAAGAGCTGCAACCTCCAACACAGTC-AGTGAGAGCAAAGCT-TTCAGCTGTCATATTAAG
** * * * * *
37038921 GCTCACAAGCGAAGAGTCACATCCTCCAACATAGTTAGCGAGAGCAAAGTTCCCAGTTGTCTTAT
64 GCTTGCAGGCGAAGAGCCACAACCTCCAACATAGTTACCGAGAGAAAAGTT-CCAGTTGTCTTAT
***
37038986 TAAGGCTTGC
128 TAAGGCTCAA
* * * *
37038996 AGGTGAAG-GTTGCAACCTCCAACACAGTCAGTGAGAGTAAAGCTTTCAGTTGTCATATTAAGGC
1 AGGCGAAGAGCTGCAACCTCCAACACAGTCAGTGAGAGCAAAGCTTTCAGCTGTCATATTAAGGC
* *
37039060 TTGCAGGTGAAGAGCCGCAACCTCCAACATAGTTACCGAGAGAAAAGCTT-CAGATTGT-TATAT
66 TTGCAGGCGAAGAGCCACAACCTCCAACATAGTTACCGAGAGAAAAG-TTCCAG-TTGTCT-TAT
37039123 TAAGGCTCAA
128 TAAGGCTCAA
* * * * * * * * *
37039133 AGGCGAAGAGCTGTATCCTCCAACACAATTAATGAAACCAAAGCTTTCAGCTATCACATTAAGGC
1 AGGCGAAGAGCTGCAACCTCCAACACAGTCAGTGAGAGCAAAGCTTTCAGCTGTCATATTAAGGC
* * *
37039198 TTGTAGGCGAAGAGCCACAGCCTCCAACACAGTTA
66 TTGCAGGCGAAGAGCCACAACCTCCAACATAGTTA
37039233 GTGAGACAAA
Statistics
Matches: 193, Mismatches: 38, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
136 6 0.03
137 104 0.54
138 83 0.43
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.22
Consensus pattern (137 bp):
AGGCGAAGAGCTGCAACCTCCAACACAGTCAGTGAGAGCAAAGCTTTCAGCTGTCATATTAAGGC
TTGCAGGCGAAGAGCCACAACCTCCAACATAGTTACCGAGAGAAAAGTTCCAGTTGTCTTATTAA
GGCTCAA
Found at i:37039426 original size:69 final size:69
Alignment explanation
Indices: 37039352--37039715 Score: 256
Period size: 69 Copynumber: 5.3 Consensus size: 69
37039342 AGCCACAATT
* * * * *
37039352 TCCAACATAGTTAGTAAGAGT-AAGACTTCT-AGTTTTCATATTAAGGCTTGTAGGTAAAGAGCC
1 TCCAACACAGTTAGTGAGAGTAAAG-C-TCTAAGTTGTCATATTAAGGCTTGCAGGCAAAGAGCC
*
37039415 GCAACC
64 GCAGCC
* * ** * * * **
37039421 TCCAACACAATTAGTGAGATTAAAGCTCTAAACTGTCATATTAAGGTTTACAGGCGAAGAGCTAC
1 TCCAACACAGTTAGTGAGAGTAAAGCTCTAAGTTGTCATATTAAGGCTTGCAGGCAAAGAGCCGC
37039486 AGCC
66 AGCC
* * * *
37039490 TCCAACACAGTTAGTGAGAGCAAAGCTCTCAGTTGTCATACTAAGGCTTGCCAATG--AAGAGCC
1 TCCAACACAGTTAGTGAGAGTAAAGCTCTAAGTTGTCATATTAAGGCTTG-C-AGGCAAAGAGCC
*
37039553 GCAGCT
64 GCAGCC
* ** * ** * *
37039559 TCCAACACAATTAGAAAGAG-CAAGCTCCCAGTT-TTATATTAAGGCTTGTAGGCAAAGAGCCGC
1 TCCAACACAGTTAGTGAGAGTAAAGCTCTAAGTTGTCATATTAAGGCTTGCAGGCAAAGAGCCGC
*
37039622 AGCA
66 AGCC
* * * * * * * * ** *
37039626 TCCAACATAGTTAATGAGAGTAAAGCTCCTAA-CTATCATACTAAGGCTTACCGACTGAGAGCTG
1 TCCAACACAGTTAGTGAGAGTAAAGCT-CTAAGTTGTCATATTAAGGCTTGCAGGCAAAGAGCCG
*
37039690 CAGCT
65 CAGCC
*
37039695 TCCAACATAGTTAGTGAGAGT
1 TCCAACACAGTTAGTGAGAGT
37039716 TGAAAACTCT
Statistics
Matches: 228, Mismatches: 58, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
65 2 0.01
67 40 0.18
68 20 0.09
69 160 0.70
70 4 0.02
71 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (69 bp):
TCCAACACAGTTAGTGAGAGTAAAGCTCTAAGTTGTCATATTAAGGCTTGCAGGCAAAGAGCCGC
AGCC
Found at i:37039495 original size:138 final size:136
Alignment explanation
Indices: 37038863--37039645 Score: 487
Period size: 138 Copynumber: 5.7 Consensus size: 136
37038853 TTTTCAGGCA
* * * ** * * *
37038863 AAGAGCTGCAGCCTCCAACATAGCTAGCGAGAGCAAAGCTCTTAGCTGTCATATTAAGGCTCACA
1 AAGAGCCGCAACCTCCAACACAATTAGTGAGA-CAAAGCTCTCAGCTGTCATATTAAGGCTTACA
* * * * * * * *
37038928 AGCGAAGAGTCACATCCTCCAACATAGTTAGCGAGAGCAAAGTTCCCAGTTGTCTTATTAAGGCT
65 GGCGAAGAGCCACAACCTCCAACATAGTTAGTGAGAGCAAACTT-CTAGTTTTCATATTAAGGCT
37038993 TGCAGGTG
129 TGCAGGTG
** * * * * * *
37039001 AAG-GTTGCAACCTCCAACACAGTCAGTGAGAGTAAAGCTTTCAGTTGTCATATTAAGGCTTGCA
1 AAGAGCCGCAACCTCCAACACAATTAGTGAGA-CAAAGCTCTCAGCTGTCATATTAAGGCTTACA
* * ** *
37039065 GGTGAAGAGCCGCAACCTCCAACATAGTTACCGAGAGAAAAGCTTC-AGATTGTT-ATATTAAGG
65 GGCGAAGAGCCACAACCTCCAACATAGTTAGTGAGAGCAAA-CTTCTAG-TT-TTCATATTAAGG
*** *
37039128 CTCAAAGGCG
127 CTTGCAGGTG
* * * * * * * * **
37039138 AAGAGCTGTATCCTCCAACACAATTAATGAAACCAAAGCTTTCAGCTATCACATTAAGGCTTGTA
1 AAGAGCCGCAACCTCCAACACAATTAGTGAGA-CAAAGCTCTCAGCTGTCATATTAAGGCTTACA
* * * * * *
37039203 GGCGAAGAGCCACAGCCTCCAACACAGTTAGTGAGA-CAAAAAATCCTAGCTGTT-ATATTAATG
65 GGCGAAGAGCCACAACCTCCAACATAGTTAGTGAGAGC--AAACTTCTAG-TTTTCATATTAAGG
* *
37039266 CTTGTACGTG
127 CTTGCAGGTG
* * * * * * * * * * *
37039276 AAAAGTCGCAGCATCCAACAC----AGTTAG-CAAAGCTCCCAACTGTCATACTAATGCTCACCG
1 AAGAGCCGCAACCTCCAACACAATTAGTGAGACAAAGCTCTCAGCTGTCATATTAAGGCTTACAG
* ** * *
37039336 GTGAAGAGCCACAATTTCCAACATAGTTAGTAAGAGTAAGACTTCTAGTTTTCATATTAAGGCTT
66 GCGAAGAGCCACAACCTCCAACATAGTTAGTGAGAGCAA-ACTTCTAGTTTTCATATTAAGGCTT
* *
37039401 GTAGGTA
130 GCAGGTG
* * * *
37039408 AAGAGCCGCAACCTCCAACACAATTAGTGAGATTAAAGCTCTAAACTGTCATATTAAGGTTTACA
1 AAGAGCCGCAACCTCCAACACAATTAGTGAGA-CAAAGCTCTCAGCTGTCATATTAAGGCTTACA
* * * * *
37039473 GGCGAAGAGCTACAGCCTCCAACACAGTTAGTGAGAGCAAAGC-TCTCAGTTGTCATACTAAGGC
65 GGCGAAGAGCCACAACCTCCAACATAGTTAGTGAGAGCAAA-CTTCT-AGTTTTCATATTAAGGC
*
37039537 TTGCCA-ATG
128 TTG-CAGGTG
* * ** * * * **
37039546 AAGAGCCGCAGCTTCCAACACAATTAGAAAGAGC-AAGCTCCCAG-TTTTATATTAAGGCTTGTA
1 AAGAGCCGCAACCTCCAACACAATTAGTGAGA-CAAAGCTCTCAGCTGTCATATTAAGGCTTACA
* * * * *
37039609 GGCAAAGAGCCGCAGCATCCAACATAGTTAATGAGAG
65 GGCGAAGAGCCACAACCTCCAACATAGTTAGTGAGAG
37039646 TAAAGCTCCT
Statistics
Matches: 491, Mismatches: 135, Indels: 40
0.74 0.20 0.06
Matches are distributed among these distances:
131 5 0.01
132 90 0.18
134 3 0.01
136 52 0.11
137 114 0.23
138 220 0.45
139 7 0.01
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.23
Consensus pattern (136 bp):
AAGAGCCGCAACCTCCAACACAATTAGTGAGACAAAGCTCTCAGCTGTCATATTAAGGCTTACAG
GCGAAGAGCCACAACCTCCAACATAGTTAGTGAGAGCAAACTTCTAGTTTTCATATTAAGGCTTG
CAGGTG
Found at i:37039652 original size:205 final size:207
Alignment explanation
Indices: 37039301--37039714 Score: 494
Period size: 205 Copynumber: 2.0 Consensus size: 207
37039291 CAACACAGTT
* ** * * *
37039301 AGCAAAGCTCCCAACTGTCATACTAATGCTCACCGGTGAAGAGCCACAATTTCCAACATAGTTAG
1 AGCAAAGCTCCCAACTGTCATACTAAGGCTCACCAATGAAGAGCCACAACTTCCAACACAATTAG
* * * * * *
37039366 TAAGAGTAAGACTTCTAGTTTTCATATTAAGGCTTGTAGGTAAAGAGCCGCAACCTCCAACACAA
66 AAAGAGCAAGACTCCCAGTTTTCATATTAAGGCTTGTAGGCAAAGAGCCGCAACATCCAACACAA
* * * * * *
37039431 TTAGTGAGATTAAAGCT-CTAAACTGTCATATTAAGGTTTACAGGC-GAAGAGCTACAGCCTCCA
131 TTAATGAGAGTAAAGCTCCT-AACTATCATACTAAGGCTTACAGACTG-AGAGCTACAGCCTCCA
37039494 ACACAGTTAGTGAG
194 ACACAGTTAGTGAG
* ** ** * *
37039508 AGCAAAGCTCTCAGTTGTCATACTAAGGCTTGCCAATGAAGAGCCGCAGCTTCCAACACAATTAG
1 AGCAAAGCTCCCAACTGTCATACTAAGGCTCACCAATGAAGAGCCACAACTTCCAACACAATTAG
* * *
37039573 AAAGAGCAAG-CTCCCAGTTTT-ATATTAAGGCTTGTAGGCAAAGAGCCGCAGCATCCAACATAG
66 AAAGAGCAAGACTCCCAGTTTTCATATTAAGGCTTGTAGGCAAAGAGCCGCAACATCCAACACAA
* * *
37039636 TTAATGAGAGTAAAGCTCCTAACTATCATACTAAGGCTTACCGACTGAGAGCTGCAGCTTCCAAC
131 TTAATGAGAGTAAAGCTCCTAACTATCATACTAAGGCTTACAGACTGAGAGCTACAGCCTCCAAC
*
37039701 ATAGTTAGTGAG
196 ACAGTTAGTGAG
37039713 AG
1 AG
37039715 TTGAAAACTC
Statistics
Matches: 173, Mismatches: 32, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
205 101 0.58
206 12 0.07
207 60 0.35
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (207 bp):
AGCAAAGCTCCCAACTGTCATACTAAGGCTCACCAATGAAGAGCCACAACTTCCAACACAATTAG
AAAGAGCAAGACTCCCAGTTTTCATATTAAGGCTTGTAGGCAAAGAGCCGCAACATCCAACACAA
TTAATGAGAGTAAAGCTCCTAACTATCATACTAAGGCTTACAGACTGAGAGCTACAGCCTCCAAC
ACAGTTAGTGAG
Found at i:37039873 original size:58 final size:56
Alignment explanation
Indices: 37039733--37039924 Score: 204
Period size: 58 Copynumber: 3.3 Consensus size: 56
37039723 TCTCACCTGT
* * * * *
37039733 TTATCTTTCAAAATTTTCGCAAGTCTAACATAGCTTACAAATTAACATCCCCAACTGTA
1 TTATCTTTCAAAATTTTCGTAAGTATAA-ATAGCTTGC-AATTCACATCCCTAACTG-A
* * *
37039792 TTACCTTTCAAAATTTTCTTAAGTATGAAATAGCTTGCGAATTCACATCCCTAGCTGA
1 TTATCTTTCAAAATTTTCGTAAGTAT-AAATAGCTTGC-AATTCACATCCCTAACTGA
* ** * *
37039850 TTATCTTTCAAGATTTTCGTAAGTATAAAATAGCCCGCAGGTTCACATCCCTAACAGA
1 TTATCTTTCAAAATTTTCGTAAGTAT-AAATAGCTTGCA-ATTCACATCCCTAACTGA
37039908 TTATCTTTCAAAATTTT
1 TTATCTTTCAAAATTTT
37039925 TGCAAGTTTA
Statistics
Matches: 112, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
57 1 0.01
58 64 0.57
59 45 0.40
60 2 0.02
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (56 bp):
TTATCTTTCAAAATTTTCGTAAGTATAAATAGCTTGCAATTCACATCCCTAACTGA
Found at i:37043922 original size:25 final size:25
Alignment explanation
Indices: 37043850--37043947 Score: 151
Period size: 25 Copynumber: 3.8 Consensus size: 25
37043840 GAGGAAGTGC
37043850 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTT-TGCCCCAGTTTATTG
37043876 AAAAAGGGCTTTTGCCCCAGTTTATTG
1 -AAAAGGGC-TTTGCCCCAGTTTATTG
* *
37043903 AAAAGGGCTTTGCCCTAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTATTG
37043928 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
37043948 ATTAAAGAGG
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
25 34 0.51
26 8 0.12
27 23 0.34
28 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATTG
Found at i:37048310 original size:2 final size:2
Alignment explanation
Indices: 37048303--37048329 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
37048293 ATTCTATTAA
37048303 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
37048330 TATATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:37048956 original size:31 final size:29
Alignment explanation
Indices: 37048912--37048973 Score: 81
Period size: 31 Copynumber: 2.1 Consensus size: 29
37048902 TTACGTTCAA
*
37048912 TTTCACAATGCCATAAC-CTAGTTATGGTC
1 TTTCACAATGCCATAACTCT-GCTATGGTC
37048941 TTTCACACTATGCCATAACTCTGCTATGGTC
1 TTTCACA--ATGCCATAACTCTGCTATGGTC
37048972 TT
1 TT
37048974 ACACTTCACA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 7 0.24
31 20 0.69
32 2 0.07
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (29 bp):
TTTCACAATGCCATAACTCTGCTATGGTC
Found at i:37050034 original size:29 final size:29
Alignment explanation
Indices: 37050001--37050056 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
37049991 TTTTTGAGCA
* *
37050001 TAGGGGTAAAATGGTCATTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTACCAAAGTC
*
37050030 TAGGGGCAACATGGTCATTTACCAAAG
1 TAGGGGCAAAATGGTCATTTACCAAAG
37050057 ATGTGAATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (29 bp):
TAGGGGCAAAATGGTCATTTACCAAAGTC
Found at i:37050773 original size:101 final size:101
Alignment explanation
Indices: 37050650--37050851 Score: 386
Period size: 101 Copynumber: 2.0 Consensus size: 101
37050640 ATCACGAGCC
* *
37050650 CAAATTCTTGAAGGCGAGGCCCAATAACCAAAATCCAGCCTAATCAAGAAATTTCTTCATACTTA
1 CAAATTCTTGAAGGCAAGGCCCAATAACCAAAATCCAGCCCAATCAAGAAATTTCTTCATACTTA
37050715 GTTGAAAATCAGGCCAAAATGTCAAAGGGCCCAATT
66 GTTGAAAATCAGGCCAAAATGTCAAAGGGCCCAATT
37050751 CAAATTCTTGAAGGCAAGGCCCAATAACCAAAATCCAGCCCAATCAAGAAATTTCTTCATACTTA
1 CAAATTCTTGAAGGCAAGGCCCAATAACCAAAATCCAGCCCAATCAAGAAATTTCTTCATACTTA
37050816 GTTGAAAATCAGGCCAAAATGTCAAAGGGCCCAATT
66 GTTGAAAATCAGGCCAAAATGTCAAAGGGCCCAATT
37050852 TGTAAACATC
Statistics
Matches: 99, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
101 99 1.00
ACGTcount: A:0.39, C:0.23, G:0.15, T:0.22
Consensus pattern (101 bp):
CAAATTCTTGAAGGCAAGGCCCAATAACCAAAATCCAGCCCAATCAAGAAATTTCTTCATACTTA
GTTGAAAATCAGGCCAAAATGTCAAAGGGCCCAATT
Found at i:37051619 original size:34 final size:34
Alignment explanation
Indices: 37051581--37051697 Score: 87
Period size: 34 Copynumber: 3.3 Consensus size: 34
37051571 GCATCTTTTC
37051581 TTTCTTTTCAATTTCGTTTGATTCATCGATTCTA
1 TTTCTTTTCAATTTCGTTTGATTCATCGATTCTA
* * * *
37051615 TTTC-TTTCGAATCAATTCCTTGGCAGATTCCCATC--TTTTC
1 TTTCTTTTC-AAT---TTCGTT---TGATT--CATCGATTCTA
*
37051655 TTTCTTCTCAATTTCGTTTGATTCATCGATTCTA
1 TTTCTTTTCAATTTCGTTTGATTCATCGATTCTA
37051689 TTTCTTTTC
1 TTTCTTTTC
37051698 TTCTTGCTGC
Statistics
Matches: 61, Mismatches: 10, Indels: 24
0.64 0.11 0.25
Matches are distributed among these distances:
32 4 0.07
33 4 0.07
34 22 0.36
37 10 0.16
40 14 0.23
41 3 0.05
42 4 0.07
ACGTcount: A:0.16, C:0.22, G:0.09, T:0.53
Consensus pattern (34 bp):
TTTCTTTTCAATTTCGTTTGATTCATCGATTCTA
Found at i:37051632 original size:74 final size:74
Alignment explanation
Indices: 37051549--37051695 Score: 276
Period size: 74 Copynumber: 2.0 Consensus size: 74
37051539 ATTCTTGGCT
* *
37051549 GAATCAATTCCTTGGCAGATTCGCATCTTTTCTTTCTTTTCAATTTCGTTTGATTCATCGATTCT
1 GAATCAATTCCTTGGCAGATTCCCATCTTTTCTTTCTTCTCAATTTCGTTTGATTCATCGATTCT
37051614 ATTTCTTTC
66 ATTTCTTTC
37051623 GAATCAATTCCTTGGCAGATTCCCATCTTTTCTTTCTTCTCAATTTCGTTTGATTCATCGATTCT
1 GAATCAATTCCTTGGCAGATTCCCATCTTTTCTTTCTTCTCAATTTCGTTTGATTCATCGATTCT
37051688 ATTTCTTT
66 ATTTCTTT
37051696 TCTTCTTGCT
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 71 1.00
ACGTcount: A:0.18, C:0.22, G:0.10, T:0.50
Consensus pattern (74 bp):
GAATCAATTCCTTGGCAGATTCCCATCTTTTCTTTCTTCTCAATTTCGTTTGATTCATCGATTCT
ATTTCTTTC
Found at i:37051666 original size:36 final size:36
Alignment explanation
Indices: 37051551--37051667 Score: 96
Period size: 36 Copynumber: 3.2 Consensus size: 36
37051541 TCTTGGCTGA
*
37051551 ATCAATTCCTTGGCAGATTCGCATCTTTTCTTTCTT
1 ATCAATTCCTTGGCAGATTCCCATCTTTTCTTTCTT
* * * * **
37051587 TTCAATTTCGTT---TGATTCATCGATTCTATTTCTTTCGA
1 ATCAA-TTCCTTGGCAGATTC--CCA-TCT-TTTCTTTCTT
37051625 ATCAATTCCTTGGCAGATTCCCATCTTTTCTTTCTT
1 ATCAATTCCTTGGCAGATTCCCATCTTTTCTTTCTT
*
37051661 CTCAATT
1 ATCAATT
37051668 TCGTTTGATT
Statistics
Matches: 59, Mismatches: 14, Indels: 16
0.66 0.16 0.18
Matches are distributed among these distances:
34 5 0.08
36 19 0.32
37 16 0.27
38 14 0.24
40 5 0.08
ACGTcount: A:0.18, C:0.24, G:0.09, T:0.49
Consensus pattern (36 bp):
ATCAATTCCTTGGCAGATTCCCATCTTTTCTTTCTT
Found at i:37052328 original size:55 final size:55
Alignment explanation
Indices: 37052245--37052431 Score: 315
Period size: 55 Copynumber: 3.4 Consensus size: 55
37052235 TGAACTTAAA
* *
37052245 GTTTT-AAGTCAAT-TTAGTACACGGGTAGGCCACACGGGCGTGTGTCATGGCCGT
1 GTTTTAAAGTCAGTGTT-GTACACGAGTAGGCCACACGGGCGTGTGTCATGGCCGT
37052299 GTTTTAAAGTCAGTGTTGTACACGAGTAGGCCACACGGGCGTGTGTCATGGCCGT
1 GTTTTAAAGTCAGTGTTGTACACGAGTAGGCCACACGGGCGTGTGTCATGGCCGT
37052354 GTTTTAAAGTCAGTGTTGTACACGAGTAGGCCACACGGGCGTGTGTCATGGCCGT
1 GTTTTAAAGTCAGTGTTGTACACGAGTAGGCCACACGGGCGTGTGTCATGGCCGT
* *
37052409 GTTTTAAAGTTAGTGTTGCACAC
1 GTTTTAAAGTCAGTGTTGTACAC
37052432 AGGCTAAGGG
Statistics
Matches: 127, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
54 5 0.04
55 120 0.94
56 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (55 bp):
GTTTTAAAGTCAGTGTTGTACACGAGTAGGCCACACGGGCGTGTGTCATGGCCGT
Found at i:37055378 original size:15 final size:15
Alignment explanation
Indices: 37055358--37055386 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
37055348 GAAATAAAGG
37055358 AAAGAAACAGAATGA
1 AAAGAAACAGAATGA
37055373 AAAGAAACAGAATG
1 AAAGAAACAGAATG
37055387 TGGAAACGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.66, C:0.07, G:0.21, T:0.07
Consensus pattern (15 bp):
AAAGAAACAGAATGA
Found at i:37055397 original size:18 final size:15
Alignment explanation
Indices: 37055356--37055401 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
37055346 AGGAAATAAA
37055356 GGAAAGAAACAGAAT
1 GGAAAGAAACAGAAT
*
37055371 GAAAAGAAACAGAATGT
1 GGAAAGAAACAGAA--T
37055388 GGAAACGAAACAGA
1 GGAAA-GAAACAGA
37055402 GAAGAAACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 13 0.50
17 5 0.19
18 8 0.31
ACGTcount: A:0.59, C:0.09, G:0.26, T:0.07
Consensus pattern (15 bp):
GGAAAGAAACAGAAT
Found at i:37055814 original size:23 final size:21
Alignment explanation
Indices: 37055767--37055807 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
37055757 TTTGGTTAAA
37055767 AATTGAATAGAAATGAAGTATG
1 AATTGAATAGAAA-GAAGTATG
37055789 AATTGAGATAGAAA-AAGTA
1 AATTGA-ATAGAAAGAAGTA
37055808 AGTGAATCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.28
22 6 0.33
23 7 0.39
ACGTcount: A:0.54, C:0.00, G:0.22, T:0.24
Consensus pattern (21 bp):
AATTGAATAGAAAGAAGTATG
Found at i:37056144 original size:15 final size:15
Alignment explanation
Indices: 37056124--37056161 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
37056114 GAATTTATCA
37056124 AATTTATATTGATTG
1 AATTTATATTGATTG
37056139 AATTTATATTGATTG
1 AATTTATATTGATTG
*
37056154 AAATTATA
1 AATTTATA
37056162 ATATATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (15 bp):
AATTTATATTGATTG
Found at i:37056568 original size:23 final size:23
Alignment explanation
Indices: 37056538--37056623 Score: 90
Period size: 21 Copynumber: 3.9 Consensus size: 23
37056528 GCTTTATCGA
* *
37056538 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
37056561 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
37056582 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
37056604 T-AGGCACTTTATGTGTCGTA
1 TCAGGCACCTCATGTGTCGTA
37056624 CTCTGATCAG
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
21 35 0.65
22 1 0.02
23 18 0.33
ACGTcount: A:0.15, C:0.22, G:0.26, T:0.37
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:37056806 original size:18 final size:19
Alignment explanation
Indices: 37056785--37056825 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
37056775 AATGAAATGA
37056785 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
37056803 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
37056822 GAAA
1 GAAA
37056826 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:37056934 original size:17 final size:17
Alignment explanation
Indices: 37056912--37056944 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
37056902 TGTTGTTAAG
37056912 AAGTAAAGTGTGAATAC
1 AAGTAAAGTGTGAATAC
*
37056929 AAGTAAATTGTGAATA
1 AAGTAAAGTGTGAATA
37056945 TATTGTATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.03, G:0.21, T:0.27
Consensus pattern (17 bp):
AAGTAAAGTGTGAATAC
Found at i:37059168 original size:21 final size:22
Alignment explanation
Indices: 37059136--37059179 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
37059126 AAATAAAATA
*
37059136 GTATGAAATTATATGAAACAAT
1 GTATGAAATTATATAAAACAAT
*
37059158 GTATG-AATTATATAAAATAAT
1 GTATGAAATTATATAAAACAAT
37059179 G
1 G
37059180 CATTTTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.50, C:0.02, G:0.14, T:0.34
Consensus pattern (22 bp):
GTATGAAATTATATAAAACAAT
Found at i:37060093 original size:60 final size:61
Alignment explanation
Indices: 37059952--37060098 Score: 154
Period size: 61 Copynumber: 2.4 Consensus size: 61
37059942 TTTTAAGATA
* * * * * *
37059952 TTGGTTTAGGGTTTTTAATTTGGCTACTAATTAGAAGAGGAATTTTGGGTACTTTAGTTTT
1 TTGGTTTAGGGTTTTTGATTTGGTTACTAATAAGAAGAGGAATTTTGGGCACTTTAGGTTC
* * * * * *
37060013 TTTGTTTAGGGTTTTCGATTTGGTTACTGAA-AAGAAGAGGACTTTT-TGCATTTTTGGTTC
1 TTGGTTTAGGGTTTTTGATTTGGTTACT-AATAAGAAGAGGAATTTTGGGCACTTTAGGTTC
*
37060073 TTGGTTTAGGGTTTTTGATTTTGTTA
1 TTGGTTTAGGGTTTTTGATTTGGTTA
37060099 GTGATAGTGG
Statistics
Matches: 70, Mismatches: 15, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
60 31 0.44
61 37 0.53
62 2 0.03
ACGTcount: A:0.20, C:0.05, G:0.25, T:0.50
Consensus pattern (61 bp):
TTGGTTTAGGGTTTTTGATTTGGTTACTAATAAGAAGAGGAATTTTGGGCACTTTAGGTTC
Found at i:37060150 original size:19 final size:19
Alignment explanation
Indices: 37060126--37060163 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
37060116 TAAAATTTGA
37060126 CAAATCTACATGTTTCATT
1 CAAATCTACATGTTTCATT
37060145 CAAATCTACATGTTTCATT
1 CAAATCTACATGTTTCATT
37060164 ATACTTTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.21, G:0.05, T:0.42
Consensus pattern (19 bp):
CAAATCTACATGTTTCATT
Found at i:37064280 original size:81 final size:81
Alignment explanation
Indices: 37064145--37064298 Score: 263
Period size: 81 Copynumber: 1.9 Consensus size: 81
37064135 GATGGTAATC
* *
37064145 AAGGTGGTGAGGGTGGTGAAGGTTTAAATGGGGAGGGTGTTGAGGTTGTTGGCAGTAAAAGTGGT
1 AAGGTGGTGAGGGTGGTGAAGGTTTAAATAGGGAGGGTGTTGAGGTTGATGGCAGTAAAAGTGGT
37064210 GAGGTTGAAATTGATG
66 GAGGTTGAAATTGATG
* * *
37064226 AAGGTGGTGAGGGTGTTGAAGGTTTAAATAGGGAGGGTGTTGATGTTGATGGCAGTAAAGGTGGT
1 AAGGTGGTGAGGGTGGTGAAGGTTTAAATAGGGAGGGTGTTGAGGTTGATGGCAGTAAAAGTGGT
37064291 GAGGTTGA
66 GAGGTTGA
37064299 TGCTGCAAGT
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 68 1.00
ACGTcount: A:0.25, C:0.01, G:0.45, T:0.29
Consensus pattern (81 bp):
AAGGTGGTGAGGGTGGTGAAGGTTTAAATAGGGAGGGTGTTGAGGTTGATGGCAGTAAAAGTGGT
GAGGTTGAAATTGATG
Found at i:37064360 original size:21 final size:20
Alignment explanation
Indices: 37064335--37064373 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
37064325 TAGATGCATC
*
37064335 TGCTGAAGGGTTTGAATAGGA
1 TGCTGAA-GGTTTAAATAGGA
*
37064356 TGCTGGAGGTTTAAATAG
1 TGCTGAAGGTTTAAATAG
37064374 TGGTGTTGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.28, C:0.05, G:0.36, T:0.31
Consensus pattern (20 bp):
TGCTGAAGGTTTAAATAGGA
Found at i:37072341 original size:26 final size:26
Alignment explanation
Indices: 37072306--37072413 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
37072296 TGAAATGCCC
* *
37072306 ATCATAGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
37072332 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
37072358 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
37072384 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
37072410 ATCA
1 ATCA
37072414 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:37074670 original size:20 final size:22
Alignment explanation
Indices: 37074632--37074679 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
37074622 TAAAACAAAT
37074632 AAATAATACATTAAATTAAA-A
1 AAATAATACATTAAATTAAAGA
* *
37074653 AAATAATTC-TTAATTTAAAGA
1 AAATAATACATTAAATTAAAGA
37074674 AAATAA
1 AAATAA
37074680 ACGTAATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.31
Consensus pattern (22 bp):
AAATAATACATTAAATTAAAGA
Found at i:37076730 original size:32 final size:29
Alignment explanation
Indices: 37076671--37076783 Score: 82
Period size: 32 Copynumber: 3.6 Consensus size: 29
37076661 ATCATAATCT
* * *
37076671 AAAAATAAAAAATTTATAATTTCAAAAATTA
1 AAAAATAAAAAATATACAA-AT-AAAAATTA
*
37076702 ACAAAATTAAAAATATATCAAGATAAAAATTA
1 A-AAAATAAAAAATATA-CAA-ATAAAAATTA
**
37076734 TTTAAAAATCCAAAATATACAAATAAAAATTCA
1 ---AAAAATAAAAAATATACAAATAAAAATT-A
37076767 AAAAATCAAAAAATATA
1 AAAAAT-AAAAAATATA
37076784 ATTTTTTTTA
Statistics
Matches: 66, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
30 6 0.09
31 9 0.14
32 30 0.45
33 7 0.11
34 13 0.20
35 1 0.02
ACGTcount: A:0.65, C:0.07, G:0.01, T:0.27
Consensus pattern (29 bp):
AAAAATAAAAAATATACAAATAAAAATTA
Found at i:37077669 original size:15 final size:15
Alignment explanation
Indices: 37077635--37077680 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
37077625 ATTTATCCAT
37077635 TTATATTTCTACTATTA
1 TTATATTTCTA-T-TTA
37077652 TTATATTTCTATTTA
1 TTATATTTCTATTTA
*
37077667 TTATATTTTTATTT
1 TTATATTTCTATTT
37077681 CTGTTTATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATATTTCTATTTA
Found at i:37077673 original size:23 final size:23
Alignment explanation
Indices: 37077647--37077713 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 23
37077637 ATATTTCTAC
37077647 TATTATTATATTTCTATTTATTA
1 TATTATTATATTTCTATTTATTA
*
37077670 TATT-TT-TATTTCTGTTTATATA
1 TATTATTATATTTCTATTTAT-TA
*
37077692 CTAATATTAT-TTTC-A-TTATTA
1 -TATTATTATATTTCTATTTATTA
37077713 T
1 T
37077714 TTTTCTTATA
Statistics
Matches: 37, Mismatches: 3, Indels: 11
0.73 0.06 0.22
Matches are distributed among these distances:
20 1 0.03
21 14 0.38
22 8 0.22
23 7 0.19
24 6 0.16
25 1 0.03
ACGTcount: A:0.28, C:0.06, G:0.01, T:0.64
Consensus pattern (23 bp):
TATTATTATATTTCTATTTATTA
Found at i:37079400 original size:15 final size:16
Alignment explanation
Indices: 37079380--37079410 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
37079370 AATAGTATTT
37079380 TATTTTTA-AAATATA
1 TATTTTTAGAAATATA
37079395 TATTTTTAGAAATATA
1 TATTTTTAGAAATATA
37079411 ATACATGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (16 bp):
TATTTTTAGAAATATA
Found at i:37089727 original size:43 final size:39
Alignment explanation
Indices: 37089638--37089717 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
37089628 TAAAGAAAGA
37089638 CAGAAAACAAACAATCAACTGGTAGATGCATGCAACGTT
1 CAGAAAACAAACAATCAACTGGTAGATGCATGCAACGTT
*
37089677 CAGAAAACAAACAATCCACTGGTAGATGCATGCAACGTT
1 CAGAAAACAAACAATCAACTGGTAGATGCATGCAACGTT
37089716 CA
1 CA
37089718 TAATGAAAAC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.42, C:0.23, G:0.17, T:0.17
Consensus pattern (39 bp):
CAGAAAACAAACAATCAACTGGTAGATGCATGCAACGTT
Found at i:37091918 original size:43 final size:43
Alignment explanation
Indices: 37091857--37091943 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
37091847 ATTCATATTC
* * *
37091857 TTCACAAAAGGTTGGGCCCGGGTTAGATTCGAGTCCGTAATTG
1 TTCACAAAAGGTTGGGCCCAGATTAGATTCGAGTCCCTAATTG
*
37091900 TTCACAAAAGGTTGGGCCCAGATTAGATTTGAGTCCCTAATTG
1 TTCACAAAAGGTTGGGCCCAGATTAGATTCGAGTCCCTAATTG
37091943 T
1 T
37091944 AATGATTAGG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
TTCACAAAAGGTTGGGCCCAGATTAGATTCGAGTCCCTAATTG
Found at i:37098575 original size:46 final size:46
Alignment explanation
Indices: 37098508--37098764 Score: 514
Period size: 46 Copynumber: 5.6 Consensus size: 46
37098498 TGTAACCCGC
37098508 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
37098554 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
37098600 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
37098646 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
37098692 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
37098738 CCATAAGTGAACTCGGACTCAACTCAA
1 CCATAAGTGAACTCGGACTCAACTCAA
37098765 CAAGTTCGGA
Statistics
Matches: 211, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 211 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
Found at i:37099673 original size:62 final size:62
Alignment explanation
Indices: 37099597--37099718 Score: 235
Period size: 62 Copynumber: 2.0 Consensus size: 62
37099587 AAGTTAATTC
*
37099597 GAGCTACCGGGATTTTAAAAACATAAAAATCATTAAAAACGGGGCATGAAATCACTTACTTT
1 GAGCTACCGGGATTTCAAAAACATAAAAATCATTAAAAACGGGGCATGAAATCACTTACTTT
37099659 GAGCTACCGGGATTTCAAAAACATAAAAATCATTAAAAACGGGGCATGAAATCACTTACT
1 GAGCTACCGGGATTTCAAAAACATAAAAATCATTAAAAACGGGGCATGAAATCACTTACT
37099719 ATGAAGCTTG
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.43, C:0.17, G:0.16, T:0.24
Consensus pattern (62 bp):
GAGCTACCGGGATTTCAAAAACATAAAAATCATTAAAAACGGGGCATGAAATCACTTACTTT
Found at i:37106369 original size:46 final size:46
Alignment explanation
Indices: 37106302--37106558 Score: 514
Period size: 46 Copynumber: 5.6 Consensus size: 46
37106292 TGTAACCCGC
37106302 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
37106348 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
37106394 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
37106440 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
37106486 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
37106532 CCATAAGTGAACTCGGACTCAACTCAA
1 CCATAAGTGAACTCGGACTCAACTCAA
37106559 CAAGTTCGGA
Statistics
Matches: 211, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 211 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
Found at i:37111082 original size:27 final size:27
Alignment explanation
Indices: 37111051--37111154 Score: 104
Period size: 27 Copynumber: 3.9 Consensus size: 27
37111041 CTGTCTTGGC
*
37111051 GGACTACCCCGTGTTTACTGTCTCGAT
1 GGACTACCCCGTGTTTACTGTCTCAAT
* * *
37111078 AGACTACCTCGTG-TTAGCTATCTCAAT
1 GGACTACCCCGTGTTTA-CTGTCTCAAT
* * *
37111105 GGACTACCTCATGTTTACTGTC-CTAGT
1 GGACTACCCCGTGTTTACTGTCTC-AAT
*
37111132 GGACTACCCCGTGTTTATTGTCT
1 GGACTACCCCGTGTTTACTGTCT
37111155 TAACAGACTT
Statistics
Matches: 62, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
26 4 0.06
27 55 0.89
28 3 0.05
ACGTcount: A:0.18, C:0.27, G:0.19, T:0.36
Consensus pattern (27 bp):
GGACTACCCCGTGTTTACTGTCTCAAT
Found at i:37117556 original size:13 final size:13
Alignment explanation
Indices: 37117538--37117563 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37117528 CGTGTTTCCA
37117538 AAAACCATTTGTT
1 AAAACCATTTGTT
37117551 AAAACCATTTGTT
1 AAAACCATTTGTT
37117564 TGCTTAAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (13 bp):
AAAACCATTTGTT
Found at i:37119490 original size:22 final size:22
Alignment explanation
Indices: 37119465--37119510 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
37119455 GAGCAATTGT
* *
37119465 GAGAATTGGAGGAAGCCACCAC
1 GAGAATGGGAGGAAGCCAACAC
37119487 GAGAATGGGAGGAAGCCAACAC
1 GAGAATGGGAGGAAGCCAACAC
37119509 GA
1 GA
37119511 TCAGTCTTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.39, C:0.20, G:0.35, T:0.07
Consensus pattern (22 bp):
GAGAATGGGAGGAAGCCAACAC
Found at i:37121151 original size:137 final size:137
Alignment explanation
Indices: 37120905--37121191 Score: 493
Period size: 137 Copynumber: 2.1 Consensus size: 137
37120895 TATTGGGCCT
** * **
37120905 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCATTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCATTTTCAGATTACAATAAACCGGAACTT
*
37120970 AGCCCCTTATTCAAATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAAATAACAGTATGGCCCATAAGCCCATTTCAAAATACATGCAACATCAGTAAA
37121035 CATATGC
131 CATATGC
* *
37121042 AAGCCCATTTGGGTAACAGTGGTACTGGGCTAGAGCCCTTTTCAGATTACAATAAACCGGAACTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCATTTTCAGATTACAATAAACCGGAACTT
*
37121107 AGCCCCTTATTCAGATAACAGTATGGCCCATAAGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAAATAACAGTATGGCCCATAAGCCCATTTCAAAATACATGCAACATCAGTAAA
37121172 CATATGC
131 CATATGC
37121179 AAGCCCATTTGGG
1 AAGCCCATTTGGG
37121192 GAGACTACTC
Statistics
Matches: 141, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
137 141 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCATTTTCAGATTACAATAAACCGGAACTT
AGCCCCTTATTCAAATAACAGTATGGCCCATAAGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:37123009 original size:26 final size:26
Alignment explanation
Indices: 37122979--37123060 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
37122969 TGAAATGCCC
37122979 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
37123005 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
37123031 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
37123057 ATCA
1 ATCA
37123061 ATTTGTACCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:37128930 original size:3 final size:3
Alignment explanation
Indices: 37128924--37128976 Score: 54
Period size: 3 Copynumber: 17.3 Consensus size: 3
37128914 AAATAGATAT
* * *
37128924 TTA TTA TTA TAA TTA TTAA TTA TTA TTA TTG TT- TATA TTA TTA TTT
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA T-TA TTA TTA TTA
37128970 TTA TTA T
1 TTA TTA T
37128977 GGAATAAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
2 1 0.02
3 37 0.88
4 4 0.10
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:37137630 original size:38 final size:38
Alignment explanation
Indices: 37137566--37137640 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
37137556 AATCCGAGTT
*
37137566 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
37137604 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
37137641 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:37138013 original size:40 final size:40
Alignment explanation
Indices: 37137693--37138001 Score: 440
Period size: 40 Copynumber: 7.8 Consensus size: 40
37137683 AAGGTCTCGA
* *
37137693 TGATG-ATCCGGGCTAAGTCTCGAAGAGCATTTGTGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
*
37137732 TGATGTATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
*
37137772 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * *
37137812 TGATGTATCCGGGCTAAATTCTGAAGAGCATTCGTGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* *
37137852 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* *
37137892 TGATGTATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * ** *
37137932 TGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * *
37137972 TGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCA
37138002 ATCATGCTGG
Statistics
Matches: 239, Mismatches: 30, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
39 5 0.02
40 234 0.98
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
Found at i:37144028 original size:32 final size:32
Alignment explanation
Indices: 37143989--37144052 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
37143979 CATAAAAAAT
37143989 ATCATACATTAGTTTTACATATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
37144021 ATCATACATTAGTTTTACATATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
37144053 TATAGTTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.34
Consensus pattern (32 bp):
ATCATACATTAGTTTTACATATAAAAAAGTAG
Found at i:37146783 original size:5 final size:5
Alignment explanation
Indices: 37146773--37146809 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
37146763 AGCTACAATC
37146773 ATTAG ATTAG ATTAG ATTAG ATTAG ATTAG ATTAG AT
1 ATTAG ATTAG ATTAG ATTAG ATTAG ATTAG ATTAG AT
37146810 GTTTATCTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.41, C:0.00, G:0.19, T:0.41
Consensus pattern (5 bp):
ATTAG
Found at i:37147241 original size:12 final size:12
Alignment explanation
Indices: 37147224--37147249 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
37147214 ATAGTTGTCG
37147224 AAACCATTTTTA
1 AAACCATTTTTA
37147236 AAACCATTTTTA
1 AAACCATTTTTA
37147248 AA
1 AA
37147250 TCGAGTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (12 bp):
AAACCATTTTTA
Found at i:37148609 original size:21 final size:20
Alignment explanation
Indices: 37148571--37148610 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
37148561 TTGGACTTTG
**
37148571 TTTTTTTTTTGGGTTTATTA
1 TTTTTTTTTTGGACTTATTA
37148591 TTTTTGTTTTTGGACTTATT
1 TTTTT-TTTTTGGACTTATT
37148611 TCTGGGCCCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTTGGACTTATTA
Found at i:37148865 original size:45 final size:45
Alignment explanation
Indices: 37148816--37148984 Score: 234
Period size: 45 Copynumber: 3.8 Consensus size: 45
37148806 TGCTATATTT
*
37148816 GATCTGCTCCTCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
* * * *
37148861 GATCTGCTCCTCGTCTAATATAGAGACGCGAAATCTGCT-TCTTC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
* *
37148905 AATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATC-TC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
* *
37148949 TGATTTGCTCCCCGTCTAATACAGAGATGCCAAATC
1 -GATCTGCTCCCCGTCTAATACAGAGACGCCAAATC
37148985 ATCTTGGATC
Statistics
Matches: 111, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
44 40 0.36
45 71 0.64
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.30
Consensus pattern (45 bp):
GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
Found at i:37148925 original size:89 final size:89
Alignment explanation
Indices: 37148817--37148984 Score: 257
Period size: 89 Copynumber: 1.9 Consensus size: 89
37148807 GCTATATTTG
* *
37148817 ATCTGCTCCTCGTCTAATACAGAGACGCCAAATCTGTTATCT-TCGATCTGCTCCTCGTCTAATA
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCT-GATCTGCTCCCCGTCTAATA
* *
37148881 TAGAGACGCGAAATCTGCTTCTTCA
65 CAGAGACGCCAAATCTGCTTCTTCA
* *
37148906 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCTGATTTGCTCCCCGTCTAATAC
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCTGATCTGCTCCCCGTCTAATAC
*
37148971 AGAGATGCCAAATC
66 AGAGACGCCAAATC
37148985 ATCTTGGATC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
89 70 0.99
90 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (89 bp):
ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCTGATCTGCTCCCCGTCTAATAC
AGAGACGCCAAATCTGCTTCTTCA
Found at i:37149083 original size:78 final size:78
Alignment explanation
Indices: 37148954--37149374 Score: 623
Period size: 78 Copynumber: 5.4 Consensus size: 78
37148944 ATCTCTGATT
*
37148954 TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAAGTCCA-ATCTA
1 TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT-CAGATCTA
*
37149018 TTATGTCTTCGATC
65 CTATGTCTTCGATC
* * *
37149032 TGCTCCCTGTCTAATATAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGC
1 TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTAC
*
37149097 TGTGTCTTCGATC
66 TATGTCTTCGATC
*
37149110 TGCTCCCCGTATAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCCA-ATCTA
1 TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT-CAGATCTA
*
37149174 TTATGTCTTCGATC
65 CTATGTCTTCGATC
* * * *
37149188 TACTCCCCGTCTAATACAGATATGCCAAATCATCTTTGATCTGCTTCAATGAAGGTCAGATCTGC
1 TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTAC
*
37149253 TGTGTCTTCGATC
66 TATGTCTTCGATC
* *
37149266 TGCTCCTCATCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTAC
1 TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTAC
37149331 TATGTCTTCGATC
66 TATGTCTTCGATC
* * **
37149344 TACTCTCCGT-TGAATATGGAGATGCCAAATC
1 TGCTCCCCGTCT-AATACAGAGATGCCAAATC
37149375 TGTTTCTTTG
Statistics
Matches: 307, Mismatches: 32, Indels: 8
0.88 0.09 0.02
Matches are distributed among these distances:
77 5 0.02
78 300 0.98
79 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.32
Consensus pattern (78 bp):
TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTAC
TATGTCTTCGATC
Found at i:37149238 original size:156 final size:156
Alignment explanation
Indices: 37148954--37149374 Score: 693
Period size: 156 Copynumber: 2.7 Consensus size: 156
37148944 ATCTCTGATT
*
37148954 TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAAGTCCAATCTAT
1 TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCCAATCTAT
* * *
37149019 TATGTCTTCGATCTGCTCCCTGTCTAATATAGAGATGCCAAATCATCTTGGATCTGCTTCAATGA
66 TATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGA
37149084 AGGTCAGATCTGCTGTGTCTTCGATC
131 AGGTCAGATCTGCTGTGTCTTCGATC
*
37149110 TGCTCCCCGTATAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCCAATCTAT
1 TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCCAATCTAT
* *
37149175 TATGTCTTCGATCTACTCCCCGTCTAATACAGATATGCCAAATCATCTTTGATCTGCTTCAATGA
66 TATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGA
37149240 AGGTCAGATCTGCTGTGTCTTCGATC
131 AGGTCAGATCTGCTGTGTCTTCGATC
* *
37149266 TGCTCCTCATCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT-CAGATCTA
1 TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCCA-ATCTA
* * **
37149330 CTATGTCTTCGATCTACTCTCCGT-TGAATATGGAGATGCCAAATC
65 TTATGTCTTCGATCTACTCCCCGTCT-AATACAGAGATGCCAAATC
37149375 TGTTTCTTTG
Statistics
Matches: 248, Mismatches: 15, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
155 3 0.01
156 245 0.99
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.32
Consensus pattern (156 bp):
TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCCAATCTAT
TATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGA
AGGTCAGATCTGCTGTGTCTTCGATC
Found at i:37149248 original size:40 final size:40
Alignment explanation
Indices: 37149204--37149326 Score: 96
Period size: 40 Copynumber: 3.1 Consensus size: 40
37149194 CCGTCTAATA
*
37149204 CAGATATGCCAAATCATCTTTGATCTGCTTCAATGAAGGT
1 CAGATATGCCAAATCATCTTCGATCTGCTTCAATGAAGGT
* ** * *
37149244 CAGATCTG-C-TGT-GTCTTCGATCTGCTCCTC-ATCTAA--T
1 CAGATATGCCAAATCATCTTCGATCTGCT--TCAAT-GAAGGT
* *
37149281 ACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT
1 -CAGATATGCCAAATCATCTTCGATCTGCTTCAATGAAGGT
37149322 CAGAT
1 CAGAT
37149327 CTACTATGTC
Statistics
Matches: 59, Mismatches: 14, Indels: 20
0.63 0.15 0.22
Matches are distributed among these distances:
37 13 0.22
38 9 0.15
39 10 0.17
40 14 0.24
41 13 0.22
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (40 bp):
CAGATATGCCAAATCATCTTCGATCTGCTTCAATGAAGGT
Found at i:37149745 original size:134 final size:134
Alignment explanation
Indices: 37149607--37149861 Score: 420
Period size: 134 Copynumber: 1.9 Consensus size: 134
37149597 TTTATTCGAT
* *
37149607 TTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGTTGGAAGCACAGGA
1 TTGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCGCTGGAAGCACAGGA
* * *
37149672 ATGTCAGATCTGCTATGTCTTCGATCTGTTCCCTGTAAACACAAGGATGCCAAATCTGCTATCTT
66 ATATCAGATCTACTATGCCTTCGATCTGTTCCCTGTAAACACAAGGATGCCAAATCTGCTATCTT
37149737 CAAC
131 CAAC
* * *
37149741 TTGTTCCCTATAAACACAGGGATGCCATGTTAAAATCTTTGATCTGCTTCGCTGTAAGCACAGGA
1 TTGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCGCTGGAAGCACAGGA
* *
37149806 ATATTAGATCTACTATGCCTTCGATCTGTTCCCTGTAAACACAGGGATGCCAAATC
66 ATATCAGATCTACTATGCCTTCGATCTGTTCCCTGTAAACACAAGGATGCCAAATC
37149862 ATTTTGGATC
Statistics
Matches: 111, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
134 111 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (134 bp):
TTGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCGCTGGAAGCACAGGA
ATATCAGATCTACTATGCCTTCGATCTGTTCCCTGTAAACACAAGGATGCCAAATCTGCTATCTT
CAAC
Found at i:37150168 original size:84 final size:84
Alignment explanation
Indices: 37150003--37150528 Score: 778
Period size: 84 Copynumber: 6.3 Consensus size: 84
37149993 ATCATCTTGG
* * * *
37150003 ACCCTACTGCTTAGGGGGTTAAGGTGCATCGTCTTCGATCTGCTCCGCTACTGCTTA-AG-GATA
1 ACCCTACTGCTTAGGGGATTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
*
37150066 AGATCTGTAAATTTAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
* * *
37150088 ACCCTACTACTTAGGGGATTAAGGCGGGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
37150153 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* *
37150172 ACCCTACTGCTTAGGGGATTAAGGTGAGTCGTTGTCGATCTGCTCCGCTACTGCTTAGGGAGATA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTC--T-TCGATCTGCTCCACTACTGCTTAGGGAGATA
*
37150237 AGATCTGC-----GAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
* *
37150254 ACTCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
37150319 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* * *
37150338 ACCTTACCGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGT
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
37150403 TCTACAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
*
37150422 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTTCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
37150487 TCTGCAAATTTAACCTATT
66 TCTGCAAATTTAACCTGTT
37150506 ACCCTACTGCTTAGGGGATTAAG
1 ACCCTACTGCTTAGGGGATTAAG
37150529 ACGCTGAATT
Statistics
Matches: 400, Mismatches: 31, Indels: 21
0.88 0.07 0.05
Matches are distributed among these distances:
79 37 0.09
80 1 0.00
82 61 0.15
83 1 0.00
84 239 0.60
85 23 0.06
86 1 0.00
87 37 0.09
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.31
Consensus pattern (84 bp):
ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
TCTGCAAATTTAACCTGTT
Found at i:37150353 original size:250 final size:248
Alignment explanation
Indices: 37150003--37150528 Score: 770
Period size: 250 Copynumber: 2.1 Consensus size: 248
37149993 ATCATCTTGG
* * * *
37150003 ACCCTACTGCTTAGGGGGTTAAGGTGCATCGTCTTCGATCTGCTCCGCTACTGCTTAAGGATAAG
1 ACCCTACTGCTTAGGGGATTAAGGCGCA-CGTCTTCGATCTACTCCACTACTGCTTAAGGATAAG
* * *
37150068 ATCTGTAAATTTAACCTGTTACCCTACTACTTAGGGGATTAAGGCGGGTCTTCGATCTACTCCAC
65 ATCTGCAAATTTAACCTGTTACCCTACCACTTAGGGGATTAAGGCGAGTCTTCGATCTACTCCAC
* *
37150133 TACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGTG
130 TACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
* *
37150198 AGTCGTTGTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGC-GAACCTGTT
195 AGTC--T-TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAGAACCTATT
* *
37150254 ACTCTACTGCTTAGGGGATTAAGGCG-A-GTCTTCGATCTACTCCACTACTGCTTAGGGAGATAA
1 ACCCTACTGCTTAGGGGATTAAGGCGCACGTCTTCGATCTACTCCACTACTGCTTA-AG-GATAA
* * *
37150317 GATCTGCAAATTTAACCTGTTACCTTACCGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
64 GATCTGCAAATTTAACCTGTTACCCTACCACTTAGGGGATTAAGGCGAGTCTTCGATCTACTCCA
*
37150382 CTACTGCTTAGGGAGATAAGTTCTACAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
129 CTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
* *
37150447 GAGTCTTCGATCTTCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTATT
194 GAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGC--A--GAACCTATT
37150506 ACCCTACTGCTTAGGGGATTAAG
1 ACCCTACTGCTTAGGGGATTAAG
37150529 ACGCTGAATT
Statistics
Matches: 248, Mismatches: 20, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
247 37 0.15
248 26 0.10
249 1 0.00
250 132 0.53
251 23 0.09
252 29 0.12
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.31
Consensus pattern (248 bp):
ACCCTACTGCTTAGGGGATTAAGGCGCACGTCTTCGATCTACTCCACTACTGCTTAAGGATAAGA
TCTGCAAATTTAACCTGTTACCCTACCACTTAGGGGATTAAGGCGAGTCTTCGATCTACTCCACT
ACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGA
GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAGAACCTATT
Found at i:37151531 original size:13 final size:11
Alignment explanation
Indices: 37151479--37151533 Score: 56
Period size: 12 Copynumber: 4.5 Consensus size: 11
37151469 GGCCTCTCCA
37151479 TTTTTTCTTTT
1 TTTTTTCTTTT
*
37151490 TCTTTTTTTTTCT
1 T-TTTTTCTTT-T
37151503 TTTTTTCTTTT
1 TTTTTTCTTTT
37151514 CTTTTTTCCTCTTT
1 -TTTTTT-CT-TTT
37151528 TTTTTT
1 TTTTTT
37151534 GAAATAGAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
11 2 0.05
12 22 0.59
13 10 0.27
14 3 0.08
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTTCTTTT
Found at i:37151532 original size:24 final size:24
Alignment explanation
Indices: 37151479--37151531 Score: 81
Period size: 23 Copynumber: 2.2 Consensus size: 24
37151469 GGCCTCTCCA
**
37151479 TTTTTTCTTTTTCTTTTTTTTTCT
1 TTTTTTCTTTTTCTTTTTTCCTCT
37151503 TTTTTTC-TTTTCTTTTTTCCTCT
1 TTTTTTCTTTTTCTTTTTTCCTCT
37151526 TTTTTT
1 TTTTTT
37151532 TTGAAATAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 20 0.74
24 7 0.26
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (24 bp):
TTTTTTCTTTTTCTTTTTTCCTCT
Found at i:37157210 original size:23 final size:22
Alignment explanation
Indices: 37157167--37157224 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
37157157 AAAAGGTATC
* *
37157167 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
37157188 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
37157211 TGCATATCATATCT
1 TACAAATCATATCT
37157225 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:37158490 original size:35 final size:34
Alignment explanation
Indices: 37158449--37158547 Score: 120
Period size: 29 Copynumber: 3.0 Consensus size: 34
37158439 TTTGATACCT
37158449 ATACAAGTAGAAATCTCAATGTTAAGTACAGACCC
1 ATACAAGTAGAAATCTCAATGTT-AGTACAGACCC
37158484 ATACAAGTAGAAATCTC-A-GCTT-G--CA-ACCC
1 ATACAAGTAGAAATCTCAATG-TTAGTACAGACCC
*
37158513 ATACAAGTAGAAATCTCAATGTTAGGTATAGACCC
1 ATACAAGTAGAAATCTCAATGTTA-GTACAGACCC
37158548 CCAACATTCC
Statistics
Matches: 55, Mismatches: 1, Indels: 16
0.76 0.01 0.22
Matches are distributed among these distances:
29 21 0.38
30 5 0.09
31 1 0.02
32 2 0.04
33 1 0.02
34 4 0.07
35 21 0.38
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.23
Consensus pattern (34 bp):
ATACAAGTAGAAATCTCAATGTTAGTACAGACCC
Found at i:37160392 original size:8 final size:8
Alignment explanation
Indices: 37160379--37160406 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
37160369 AAAATACCGG
37160379 TTTTCGGC
1 TTTTCGGC
37160387 TTTTCGGC
1 TTTTCGGC
37160395 TTTTCGGC
1 TTTTCGGC
37160403 TTTT
1 TTTT
37160407 GCCGATCTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.00, C:0.21, G:0.21, T:0.57
Consensus pattern (8 bp):
TTTTCGGC
Found at i:37161617 original size:26 final size:26
Alignment explanation
Indices: 37161581--37161690 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
37161571 CATGAAATTC
37161581 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
37161607 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
37161633 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
37161659 TTATCAT-AGAACATTTACCTAACCTA
1 TTATCATGA-AACATTTACCTAACCCA
37161685 TTATCA
1 TTATCA
37161691 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:37169937 original size:46 final size:46
Alignment explanation
Indices: 37169884--37170012 Score: 179
Period size: 46 Copynumber: 2.8 Consensus size: 46
37169874 TATTTGGGCA
*
37169884 TCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACG
*
37169930 TCCGAACTCGTTGAGTT-AAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAA-TCCGAGTTCACTTATGGATGCGAACG
* * * * *
37169976 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGG
37170013 GCGGGTTACA
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
45 2 0.03
46 70 0.96
47 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACG
Found at i:37174317 original size:44 final size:44
Alignment explanation
Indices: 37174231--37174319 Score: 142
Period size: 44 Copynumber: 2.0 Consensus size: 44
37174221 TTCATATTTC
* **
37174231 CTGCTGACTTTATTATCTTAGTTTTTGAAGCAAATATGGAAGTA
1 CTGCTGACTTTATTATCTTAGATTTTGAAGCAAATAAAGAAGTA
*
37174275 CTGCTGACTTTATTATCTTAGATTTTGAAGCATATAAAGAAGTA
1 CTGCTGACTTTATTATCTTAGATTTTGAAGCAAATAAAGAAGTA
37174319 C
1 C
37174320 CAATCATCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.39
Consensus pattern (44 bp):
CTGCTGACTTTATTATCTTAGATTTTGAAGCAAATAAAGAAGTA
Found at i:37179122 original size:258 final size:258
Alignment explanation
Indices: 37178665--37179180 Score: 1023
Period size: 258 Copynumber: 2.0 Consensus size: 258
37178655 GGGATAGCTC
37178665 AACCCACCCAGCCCAACACTCCACAGTTGCAGCATTGTTGCTCAGTTAACAGTAAATTGACGCAA
1 AACCCACCCAGCCCAACACTCCACAGTTGCAGCATTGTTGCTCAGTTAACAGTAAATTGACGCAA
*
37178730 AGCCTCTAGTACGTGGACAAGCCACTTTCAGTACTTCCTCCGTCAATATCCCAATCCATGCATCA
66 AGCCTCTAGTACGTGGAAAAGCCACTTTCAGTACTTCCTCCGTCAATATCCCAATCCATGCATCA
37178795 GATAATAACAACATGGCATGCAGTAAATAACAACAGTCAAACATGCATTTAAGTCAATTTAACCC
131 GATAATAACAACATGGCATGCAGTAAATAACAACAGTCAAACATGCATTTAAGTCAATTTAACCC
37178860 TAGGGGTATTTCGGTAATTTATCTCCTAGAGGTAAAACTGTAAATTTTCCACTTTTAAAGGTA
196 TAGGGGTATTTCGGTAATTTATCTCCTAGAGGTAAAACTGTAAATTTTCCACTTTTAAAGGTA
37178923 AACCCACCCAGCCCAACACTCCACAGTTGCAGCATTGTTGCTCAGTTAACAGTAAATTGACGCAA
1 AACCCACCCAGCCCAACACTCCACAGTTGCAGCATTGTTGCTCAGTTAACAGTAAATTGACGCAA
37178988 AGCCTCTAGTACGTGGAAAAGCCACTTTCAGTACTTCCTCCGTCAATATCCCAATCCATGCATCA
66 AGCCTCTAGTACGTGGAAAAGCCACTTTCAGTACTTCCTCCGTCAATATCCCAATCCATGCATCA
37179053 GATAATAACAACATGGCATGCAGTAAATAACAACAGTCAAACATGCATTTAAGTCAATTTAACCC
131 GATAATAACAACATGGCATGCAGTAAATAACAACAGTCAAACATGCATTTAAGTCAATTTAACCC
37179118 TAGGGGTATTTCGGTAATTTATCTCCTAGAGGTAAAACTGTAAATTTTCCACTTTTAAAGGTA
196 TAGGGGTATTTCGGTAATTTATCTCCTAGAGGTAAAACTGTAAATTTTCCACTTTTAAAGGTA
37179181 TTTCAGTAAT
Statistics
Matches: 257, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
258 257 1.00
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.27
Consensus pattern (258 bp):
AACCCACCCAGCCCAACACTCCACAGTTGCAGCATTGTTGCTCAGTTAACAGTAAATTGACGCAA
AGCCTCTAGTACGTGGAAAAGCCACTTTCAGTACTTCCTCCGTCAATATCCCAATCCATGCATCA
GATAATAACAACATGGCATGCAGTAAATAACAACAGTCAAACATGCATTTAAGTCAATTTAACCC
TAGGGGTATTTCGGTAATTTATCTCCTAGAGGTAAAACTGTAAATTTTCCACTTTTAAAGGTA
Found at i:37179397 original size:125 final size:126
Alignment explanation
Indices: 37179164--37179424 Score: 461
Period size: 125 Copynumber: 2.1 Consensus size: 126
37179154 ACTGTAAATT
*
37179164 TTCCACTTTTAAAGGTATTTCAGTAATTTATCTATTTTAGGGTTTTTCATGCATATTCCTACCTT
1 TTCCAATTTTAAAGGTATTTCAGTAATTTATCTATTTTAGGGTTTTTCATGCATATTCCTACCTT
* *
37179229 TCACGTACTAACAGAATCACGTATCGAGGGTTCTTACCGAATTGGGCCCGTTGACCCATCA
66 TCACGTACTAACAGAATCACGTACCAAGGGTTCTTACCGAATTGGGCCCGTTGACCCATCA
*
37179290 TTCCAATTTT-AAGGTATTTCAGTAATTTATCTATTTTAGGGTTTTTCATGCATATTCCTACTTT
1 TTCCAATTTTAAAGGTATTTCAGTAATTTATCTATTTTAGGGTTTTTCATGCATATTCCTACCTT
* *
37179354 TCACGTACTAACAGAATCACGTACCAAGGGTTCTTACCGAATTGGGTCCGTTGGCCCATCA
66 TCACGTACTAACAGAATCACGTACCAAGGGTTCTTACCGAATTGGGCCCGTTGACCCATCA
37179415 TTCCAATTTT
1 TTCCAATTTT
37179425 GGCCCATTAA
Statistics
Matches: 129, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
125 120 0.93
126 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (126 bp):
TTCCAATTTTAAAGGTATTTCAGTAATTTATCTATTTTAGGGTTTTTCATGCATATTCCTACCTT
TCACGTACTAACAGAATCACGTACCAAGGGTTCTTACCGAATTGGGCCCGTTGACCCATCA
Found at i:37186754 original size:21 final size:21
Alignment explanation
Indices: 37186730--37186770 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
37186720 TAGAGCGGAG
*
37186730 GCAGTAGAAAGGGAGGCAGCA
1 GCAGCAGAAAGGGAGGCAGCA
**
37186751 GCAGCAGCGAGGGAGGCAGC
1 GCAGCAGAAAGGGAGGCAGC
37186771 GGTAGCAGTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.20, G:0.46, T:0.02
Consensus pattern (21 bp):
GCAGCAGAAAGGGAGGCAGCA
Found at i:37186777 original size:21 final size:21
Alignment explanation
Indices: 37186739--37186823 Score: 86
Period size: 21 Copynumber: 4.0 Consensus size: 21
37186729 GGCAGTAGAA
37186739 AGGGAGGCAGCA-GCAGCAGCG
1 AGGGAGGCAG-AGGCAGCAGCG
* * *
37186760 AGGGAGGCAGCGGTAGCAGTG
1 AGGGAGGCAGAGGCAGCAGCG
*
37186781 GGGGAGGCCA-AGGCA-CGAGCG
1 AGGGAGG-CAGAGGCAGC-AGCG
37186802 AGGGAGGCAGAGGCAGCAGCG
1 AGGGAGGCAGAGGCAGCAGCG
37186823 A
1 A
37186824 TGGCAGCAGA
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
20 3 0.06
21 45 0.88
22 3 0.06
ACGTcount: A:0.27, C:0.20, G:0.51, T:0.02
Consensus pattern (21 bp):
AGGGAGGCAGAGGCAGCAGCG
Found at i:37187134 original size:31 final size:30
Alignment explanation
Indices: 37187070--37187135 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
37187060 CGGTTGTATT
* *
37187070 TTTTATGCTAAATTTGTTGTTTTGGCTGCA
1 TTTTATACTAAATTTGTTGATTTGGCTGCA
* * *
37187100 TTTTATACTATATTTGTTGCATTTGGTTGGA
1 TTTTATACTAAATTTGTTG-ATTTGGCTGCA
37187131 TTTTA
1 TTTTA
37187136 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 17 0.57
31 13 0.43
ACGTcount: A:0.18, C:0.08, G:0.18, T:0.56
Consensus pattern (30 bp):
TTTTATACTAAATTTGTTGATTTGGCTGCA
Found at i:37187367 original size:43 final size:43
Alignment explanation
Indices: 37187208--37187368 Score: 250
Period size: 43 Copynumber: 3.7 Consensus size: 43
37187198 TTTTTTTGGA
* * *
37187208 AAACGTCGCTAAAAGCCGTGACTTTTAGCGACGCTTTCCCAAC
1 AAACGCCGCTAAAAGCAGTGACTTTTAGCGGCGCTTTCCCAAC
** *
37187251 AAACATCGCTAAAAGCAGTGACTTTTAGCAGCGCTTTCCCAAC
1 AAACGCCGCTAAAAGCAGTGACTTTTAGCGGCGCTTTCCCAAC
* *
37187294 AAACGCCGCTAAAAGCCGTCACTTTTAGCGGCGCTTTCCCAAC
1 AAACGCCGCTAAAAGCAGTGACTTTTAGCGGCGCTTTCCCAAC
37187337 AAACGCCGCTAAAAGCAGTGACTTTTAGCGGC
1 AAACGCCGCTAAAAGCAGTGACTTTTAGCGGC
37187369 ATTTTTTTAA
Statistics
Matches: 107, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 107 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (43 bp):
AAACGCCGCTAAAAGCAGTGACTTTTAGCGGCGCTTTCCCAAC
Found at i:37188134 original size:23 final size:22
Alignment explanation
Indices: 37188108--37188154 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
37188098 GCATTCTCCC
37188108 TTCTTGTCTTTCTTTCTTTTTCT
1 TTCTTGTCTTTC-TTCTTTTTCT
*
37188131 TTCTTTTCTTTCTTCTTTTTCT
1 TTCTTGTCTTTCTTCTTTTTCT
37188153 TT
1 TT
37188155 TAATTTGCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.77
Consensus pattern (22 bp):
TTCTTGTCTTTCTTCTTTTTCT
Found at i:37188137 original size:9 final size:9
Alignment explanation
Indices: 37188116--37188155 Score: 55
Period size: 9 Copynumber: 4.3 Consensus size: 9
37188106 CCTTCTTGTC
37188116 TTTCTTTCTT
1 TTTCTTTC-T
37188126 TTTCTTTCT
1 TTTCTTTCT
37188135 TTTCTTTCT
1 TTTCTTTCT
37188144 TCTT-TTTCT
1 T-TTCTTTCT
37188153 TTT
1 TTT
37188156 AATTTGCATG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 2 0.07
9 17 0.59
10 10 0.34
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTCTTTCT
Found at i:37188187 original size:3 final size:3
Alignment explanation
Indices: 37188179--37188218 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
37188169 CCACTTTCTT
37188179 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
37188219 AATATAATAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:37202182 original size:48 final size:48
Alignment explanation
Indices: 37202112--37202203 Score: 123
Period size: 48 Copynumber: 1.9 Consensus size: 48
37202102 ACTGTGATTA
* * * *
37202112 ATGATATTTGTGTCTGTGTAAGACCATGTCTGGGTCATGGCATCGGTG
1 ATGATATGTGTGTCTGTATAAGACCATGTCTAGGACATGGCATCGGTG
*
37202160 ATGATATGTGTG-CTAGTATAAGATCATGTCTAGGACATGGCATC
1 ATGATATGTGTGTCT-GTATAAGACCATGTCTAGGACATGGCATC
37202204 AACAGTGACA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
47 2 0.05
48 36 0.95
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (48 bp):
ATGATATGTGTGTCTGTATAAGACCATGTCTAGGACATGGCATCGGTG
Found at i:37210111 original size:60 final size:60
Alignment explanation
Indices: 37209974--37210122 Score: 160
Period size: 60 Copynumber: 2.5 Consensus size: 60
37209964 CTATTCAGAA
* * * * *
37209974 ATCAGAGT-TAACTGGGCCTTAGCACATATTAATATTAATCTGGGCCATAGCCCCTTATAGT
1 ATCAGAGTAT-ACTGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTAAAGT
*
37210035 ATCAGAGTATACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCCTATTACAAGT
1 ATCAGAGTATACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTA-AAGT
* * *
37210097 -TGAGA-TATATTGGGCCTTGCCCATAT
1 ATCAGAGTATACTGGGCCTAGCCCATAT
37210123 TAACACAGTT
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
60 49 0.64
61 23 0.30
62 4 0.05
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (60 bp):
ATCAGAGTATACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTAAAGT
Found at i:37210140 original size:20 final size:20
Alignment explanation
Indices: 37210115--37210160 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
37210105 ATTGGGCCTT
37210115 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
37210135 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
37210154 GCCCATA
1 GCCCATA
37210161 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:37210169 original size:19 final size:20
Alignment explanation
Indices: 37210127--37210170 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
37210117 CCATATTAAC
** *
37210127 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
37210147 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
37210166 ACAGT
1 ACAGT
37210171 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:37218125 original size:52 final size:52
Alignment explanation
Indices: 37218047--37218159 Score: 217
Period size: 52 Copynumber: 2.2 Consensus size: 52
37218037 ATCTCTTAAC
37218047 AAAACTTTAGGGAAAGTTTAGAAACCTTCTAATCATATCAAAGCAAGTTGAA
1 AAAACTTTAGGGAAAGTTTAGAAACCTTCTAATCATATCAAAGCAAGTTGAA
37218099 AAAACTTTAGGGAAAGTTTAGAAACCTTCTAATCATATCAAAGCAAGTTGAA
1 AAAACTTTAGGGAAAGTTTAGAAACCTTCTAATCATATCAAAGCAAGTTGAA
37218151 AAACACTTT
1 AAA-ACTTT
37218160 GAAACATCCT
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 55 0.92
53 5 0.08
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.27
Consensus pattern (52 bp):
AAAACTTTAGGGAAAGTTTAGAAACCTTCTAATCATATCAAAGCAAGTTGAA
Found at i:37222723 original size:42 final size:41
Alignment explanation
Indices: 37222630--37222792 Score: 134
Period size: 42 Copynumber: 3.9 Consensus size: 41
37222620 TAGGGTTACC
* * *
37222630 GAGACTAT-GTGTAAGACCATATCTGGGATATGGCATCATTAC
1 GAGACT-TCGTGTAAGACCATATATGGGATATGGCATGA-TAT
*
37222672 GAGACTTCGTGTAAGACCATATTTGGGATATGGCATGGATAT
1 GAGACTTCGTGTAAGACCATATATGGGATATGGCAT-GATAT
* * *
37222714 GACG-TTTCGTGTAAGACCATAGATGGGCTATCGGCATCGATAT
1 GA-GACTTCGTGTAAGACCATATATGGGATAT-GGCAT-GATAT
* * * * *
37222757 GAGA-TCCCATCTAAGACTATATCTGGGATATGGCAT
1 GAGACT-TCGTGTAAGACCATATATGGGATATGGCAT
37222793 TAGTGTAGTA
Statistics
Matches: 100, Mismatches: 15, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
41 1 0.01
42 67 0.67
43 32 0.32
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (41 bp):
GAGACTTCGTGTAAGACCATATATGGGATATGGCATGATAT
Found at i:37225351 original size:79 final size:80
Alignment explanation
Indices: 37225183--37225367 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
37225173 GCTACTCGTT
* * *
37225183 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCAGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
37225247 AATTTAGTAACTCGCA
65 AATATAGTAACTAGCA
* **
37225263 CAAATGCCTTCAGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCAGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* * *
37225326 GATATGGTCACTTAGCA
65 AATATAGTAAC-TAGCA
*
37225343 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCAGGACTTAGCCCGGA
37225368 CATCATTCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.60
80 33 0.37
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCAGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGA
ATATAGTAACTAGCA
Found at i:37225367 original size:40 final size:40
Alignment explanation
Indices: 37225183--37225367 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
37225173 GCTACTCGTT
* *
37225183 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
37225223 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
37225263 CAAATGCCTTCAGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
37225302 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
37225343 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37225368 CATCATTCAA
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 78 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:37226953 original size:20 final size:20
Alignment explanation
Indices: 37226928--37227008 Score: 126
Period size: 20 Copynumber: 4.0 Consensus size: 20
37226918 TGGGCTGTCA
*
37226928 CATGTCCCAAGCCACACAGG
1 CATGTCCCAAGCCACACGGG
37226948 CATGTCCCAAGCCACACGGG
1 CATGTCCCAAGCCACACGGG
* *
37226968 CGTGTCCCAAGCCACGCGGG
1 CATGTCCCAAGCCACACGGG
*
37226988 CATGTCCCAAGCCACGCGGG
1 CATGTCCCAAGCCACACGGG
37227008 C
1 C
37227009 GTGTGGCTCT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 57 1.00
ACGTcount: A:0.22, C:0.41, G:0.27, T:0.10
Consensus pattern (20 bp):
CATGTCCCAAGCCACACGGG
Found at i:37226990 original size:40 final size:40
Alignment explanation
Indices: 37226930--37227012 Score: 139
Period size: 40 Copynumber: 2.1 Consensus size: 40
37226920 GGCTGTCACA
37226930 TGTCCCAAGCCACACAGGCATGTCCCAAGCCACACGGGCG
1 TGTCCCAAGCCACACAGGCATGTCCCAAGCCACACGGGCG
* * *
37226970 TGTCCCAAGCCACGCGGGCATGTCCCAAGCCACGCGGGCG
1 TGTCCCAAGCCACACAGGCATGTCCCAAGCCACACGGGCG
37227010 TGT
1 TGT
37227013 GGCTCTTAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.20, C:0.39, G:0.29, T:0.12
Consensus pattern (40 bp):
TGTCCCAAGCCACACAGGCATGTCCCAAGCCACACGGGCG
Found at i:37227936 original size:45 final size:45
Alignment explanation
Indices: 37227872--37228217 Score: 244
Period size: 45 Copynumber: 7.7 Consensus size: 45
37227862 AGGAAATGAT
37227872 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAAAAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAAAAATAAA
*
37227917 TAAGACCACAGTTGAAAGACACTATGGCACTATACCAAAAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAAAAATAAA
* * * *
37227962 TAAGACCATAGTTGAAAGACACTATGGCACCATACCAGAAACAAG
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAAAAATAAA
* * * *** * * * *
37228007 TAAGACCATGGCTAAAAGATGTTATGGCA-TCATGATTC---TATCGAG
1 TAAGACCATAGTTGAAAGACACTATGGCACT-AT-A-CCAAAAAT-AAA
* * * *
37228052 TAAGACCATAGCTGAAAGACACTATGGCA-T-CACGAATCAAAGAAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAA--AAATAAA
* * *
37228097 TAAGACCATAGTTAAAAGACAC-ATGGCA--ACACGACAGAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATAC--CA-AAAATAAA
* * * * * ** *
37228142 TAAGACCATGGTTGAAAGACAGTATGGCGTCAAGA-TGAGAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGC-ACTATACCAAAAATAAA
* *
37228187 TAAGACCATGGTTGAAAGACACCATGGCACT
1 TAAGACCATAGTTGAAAGACACTATGGCACT
37228218 CTCCAATCAT
Statistics
Matches: 237, Mismatches: 47, Indels: 35
0.74 0.15 0.11
Matches are distributed among these distances:
42 1 0.00
44 11 0.05
45 213 0.90
46 8 0.03
47 2 0.01
49 2 0.01
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGACACTATGGCACTATACCAAAAATAAA
Found at i:37228168 original size:135 final size:135
Alignment explanation
Indices: 37227917--37228169 Score: 302
Period size: 135 Copynumber: 1.9 Consensus size: 135
37227907 CAAAAATAAA
* * * *
37227917 TAAGACCACAGTTGAAAGACACTATGGCACTATACCAAAAATAAATAAGACCATAGTTGAAAGAC
1 TAAGACCACAGCTGAAAGACACTATGGCACTACACCAAAAAGAAATAAGACCATAGTTAAAAGAC
* * * *
37227982 ACTATGGCACCATACCAGAAACAAGTAAGACCATGGCTAAAAGATGTTATGGCATCATGATTCTA
66 ACTATGGCAACAGACCAGAAACAAATAAGACCATGGCTAAAAGAAGTTATGGCATCATGATTCTA
37228047 TCGAG
131 TCGAG
* *
37228052 TAAGACCATAGCTGAAAGACACTATGGCA-T-CACGAATCAAAGAAATAAGACCATAGTTAAAAG
1 TAAGACCACAGCTGAAAGACACTATGGCACTACACCAA--AAAGAAATAAGACCATAGTTAAAAG
* *
37228115 ACAC-ATGGCAACACGA-CAGAAA-ATGAATAAGACCATGGTTGAAAGACAG-TATGGC
64 ACACTATGGCAACA-GACCAGAAACA--AATAAGACCATGGCTAAAAGA-AGTTATGGC
37228170 GTCAAGATGA
Statistics
Matches: 100, Mismatches: 12, Indels: 12
0.81 0.10 0.10
Matches are distributed among these distances:
133 5 0.05
134 15 0.15
135 79 0.79
136 1 0.01
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.19
Consensus pattern (135 bp):
TAAGACCACAGCTGAAAGACACTATGGCACTACACCAAAAAGAAATAAGACCATAGTTAAAAGAC
ACTATGGCAACAGACCAGAAACAAATAAGACCATGGCTAAAAGAAGTTATGGCATCATGATTCTA
TCGAG
Found at i:37230432 original size:20 final size:20
Alignment explanation
Indices: 37230407--37230449 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
37230397 GTGTTACATT
37230407 TGGTATTTATAGTAGAGGGA
1 TGGTATTTATAGTAGAGGGA
37230427 TGGTATTTATAGTAGAGGGA
1 TGGTATTTATAGTAGAGGGA
37230447 TGG
1 TGG
37230450 AATAGGAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (20 bp):
TGGTATTTATAGTAGAGGGA
Found at i:37237395 original size:18 final size:20
Alignment explanation
Indices: 37237372--37237410 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
37237362 AGCAACGATC
37237372 TCAAAAA-CG-TAAAAATTA
1 TCAAAAAGCGATAAAAATTA
37237390 TCAAAAAGCGACTAAAAATTA
1 TCAAAAAGCGA-TAAAAATTA
37237411 AAGCTTGGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 2 0.11
21 9 0.50
ACGTcount: A:0.59, C:0.13, G:0.08, T:0.21
Consensus pattern (20 bp):
TCAAAAAGCGATAAAAATTA
Found at i:37237449 original size:73 final size:73
Alignment explanation
Indices: 37237330--37237623 Score: 570
Period size: 73 Copynumber: 4.0 Consensus size: 73
37237320 CATCAAAATC
37237330 AAAAATTAAAGCTTGGGTTTTGTAGTACTCGAAGCAACGATCTCAAAAACGTAAAAATTATCAAA
1 AAAAATTAAAGCTTGGGTTTTGTAGTACTCGAAGCAACGATCTCAAAAACGTAAAAATTATCAAA
37237395 AAGCGACT
66 AAGCGACT
37237403 AAAAATTAAAGCTTGGGTTTTGTAGTACTCGAAGCAACGATCTCAAAAACGTAAAAATTATCAAA
1 AAAAATTAAAGCTTGGGTTTTGTAGTACTCGAAGCAACGATCTCAAAAACGTAAAAATTATCAAA
*
37237468 AATCGACT
66 AAGCGACT
37237476 AAAAATTAAAGCTTGGGTTTTGTAGTACTCGAAGCAACGATCTCAAAAACGTAAAAATTATCAAA
1 AAAAATTAAAGCTTGGGTTTTGTAGTACTCGAAGCAACGATCTCAAAAACGTAAAAATTATCAAA
37237541 AAGCGACT
66 AAGCGACT
37237549 AAAAATTAAAGCTTGGGTTTTGTAGTACTCGAAGCAACGATCTCAAAAACGTAAAAATTATCAAA
1 AAAAATTAAAGCTTGGGTTTTGTAGTACTCGAAGCAACGATCTCAAAAACGTAAAAATTATCAAA
*
37237614 AATCGACT
66 AAGCGACT
37237622 AA
1 AA
37237624 GAACAAACCT
Statistics
Matches: 218, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 218 1.00
ACGTcount: A:0.44, C:0.15, G:0.16, T:0.25
Consensus pattern (73 bp):
AAAAATTAAAGCTTGGGTTTTGTAGTACTCGAAGCAACGATCTCAAAAACGTAAAAATTATCAAA
AAGCGACT
Found at i:37237541 original size:18 final size:20
Alignment explanation
Indices: 37237518--37237556 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
37237508 AGCAACGATC
37237518 TCAAAAA-CG-TAAAAATTA
1 TCAAAAAGCGATAAAAATTA
37237536 TCAAAAAGCGACTAAAAATTA
1 TCAAAAAGCGA-TAAAAATTA
37237557 AAGCTTGGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 2 0.11
21 9 0.50
ACGTcount: A:0.59, C:0.13, G:0.08, T:0.21
Consensus pattern (20 bp):
TCAAAAAGCGATAAAAATTA
Found at i:37242441 original size:43 final size:42
Alignment explanation
Indices: 37242225--37242441 Score: 124
Period size: 43 Copynumber: 5.1 Consensus size: 42
37242215 GGCTTTGAGC
*
37242225 CTAGCAGGCGTAATGCCGGTGAAATGATATCAGACTTAAAGGT
1 CTAGCAGGCGTAATGCCGGTG-AATGATATCGGACTTAAAGGT
* * * ** ** *
37242268 CTAGCAAGCTTTAA-GCTGGTGAAT-ATTAT-GGGGTT-CCGAGC
1 CTAGCAGGC-GTAATGCCGGTGAATGA-TATCGGACTTAAAG-GT
* * *
37242309 CTAGCAGGCGTAATGTCGATGGAATGATATTGGACTTAAAGGT
1 CTAGCAGGCGTAATGCCGGT-GAATGATATCGGACTTAAAGGT
* * ** * *** *
37242352 CTAGCAAGCTTTAA-GCTAGTGAAT-ATTATCGGGCTCCGA-GC
1 CTAGCAGGC-GTAATGCCGGTGAATGA-TATCGGACTTAAAGGT
37242393 CTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGT
1 CTAGCAGGCGTAATGCCGGTG-AATGATATCGGACTTAAAGGT
37242436 CTAGCA
1 CTAGCA
37242442 AGCTTATTGC
Statistics
Matches: 120, Mismatches: 40, Indels: 28
0.64 0.21 0.15
Matches are distributed among these distances:
40 7 0.06
41 31 0.26
42 37 0.31
43 38 0.32
44 7 0.06
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (42 bp):
CTAGCAGGCGTAATGCCGGTGAATGATATCGGACTTAAAGGT
Found at i:37242457 original size:84 final size:84
Alignment explanation
Indices: 37242212--37242446 Score: 380
Period size: 84 Copynumber: 2.8 Consensus size: 84
37242202 GTGATGAATT
** *
37242212 TCGGGCTTTGAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCAGACTTAAAGGTCTAGCAAGC
1 TCGGGCTCCGAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGC
*
37242277 TTTAAGCTGGTGAATATTA
66 TTTAAGCTAGTGAATATTA
* * * * * *
37242296 TGGGGTTCCGAGCCTAGCAGGCGTAATGTCGATGGAATGATATTGGACTTAAAGGTCTAGCAAGC
1 TCGGGCTCCGAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGC
37242361 TTTAAGCTAGTGAATATTA
66 TTTAAGCTAGTGAATATTA
37242380 TCGGGCTCCGAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGC
1 TCGGGCTCCGAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGC
37242445 TT
66 TT
37242447 ATTGCCAGTG
Statistics
Matches: 135, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
84 135 1.00
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (84 bp):
TCGGGCTCCGAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGC
TTTAAGCTAGTGAATATTA
Done.