Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56482370
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1659275 characters in sequence are not A, C, G, or T
File 112 of 172
Found at i:37547871 original size:23 final size:23
Alignment explanation
Indices: 37547840--37547884 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
37547830 GTCGGAAATG
* *
37547840 TCGAGCACCTTCGTATTGGACTA
1 TCGAACACCTTCGTATTAGACTA
*
37547863 TCGAACACCTTTGTATTAGACT
1 TCGAACACCTTCGTATTAGACT
37547885 GAACTAAGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.33
Consensus pattern (23 bp):
TCGAACACCTTCGTATTAGACTA
Found at i:37549179 original size:28 final size:29
Alignment explanation
Indices: 37549148--37549207 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
37549138 TATTTTGGAC
*
37549148 AAAAATGTTAATT-AAGGATTAAATTGAG
1 AAAAATGTAAATTGAAGGATTAAATTGAG
* * * *
37549176 AAAAGTGTAAATTGAGGGGTTAAATTGTG
1 AAAAATGTAAATTGAAGGATTAAATTGAG
37549205 AAA
1 AAA
37549208 TAAATGAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 11 0.42
29 15 0.58
ACGTcount: A:0.47, C:0.00, G:0.23, T:0.30
Consensus pattern (29 bp):
AAAAATGTAAATTGAAGGATTAAATTGAG
Found at i:37551948 original size:268 final size:266
Alignment explanation
Indices: 37551404--37552175 Score: 1125
Period size: 268 Copynumber: 3.0 Consensus size: 266
37551394 TGGAAAAGTA
*
37551404 AACAAAGTAAGCAATTAGGCTTAGTAAGTTCGTATAACTGCAAATATAAATTACCAATCAACCAC
1 AACAAAGTAAGCAATTAGGCTTAGTAAGTTCGTATAACTGCAAATATAACTTACCAATCAACCAC
*
37551469 AATTAAGCAAGTATTTTAAATTATAATGCAACTCAATTTAGTCTCATTAACCTAACATGTAATCA
66 AATTAAGCAAGTAATTTAAATTATAATGCAACTCAATTTAGTCTCATTAACCTAACATGTAATCA
*
37551534 CCAACAAAGTTAATTAT-G------AAA-TC--ACAAATTCATAGATCCAATTTCTACATG-TTT
131 CCAACAAAGTTAATTATGGAATCACAAATTCATAGAAATTCATAGATCCAATTTCTACATGATTT
* *
37551588 ACATATATACATAC---CTGTACTGGTTCATATCGAACTCGTACATTCTC-TAACATTACTGTGC
196 ACATACATACATACATACTGTACTGGTTCATATCGAACTCGTACATTCTCGTAACATCACTGTGC
37551649 CCGTTG
261 CCGTTG
*
37551655 AACAAAGTAAGCAATTAGGCTTAGTAAGTTCGTATAACTGCAAATATAACTGACCAATCAACCAC
1 AACAAAGTAAGCAATTAGGCTTAGTAAGTTCGTATAACTGCAAATATAACTTACCAATCAACCAC
*
37551720 AATTAAGCAAGTAATTTAAATTATAATGCAACTCAATTTAGTCTCATTAACCTAACATGTAATCT
66 AATTAAGCAAGTAATTTAAATTATAATGCAACTCAATTTAGTCTCATTAACCTAACATGTAATCA
37551785 CCAACAAAGTTAATTATGGAATCACAAATTCATAGAAATTTCATAGATCCAATTTCTACATGATT
131 CCAACAAAGTTAATTATGGAATCACAAATTCATAGAAA-TTCATAGATCCAATTTCTACATGATT
37551850 TACATACATACATACATACTTGTACTGG-TCTATATCGAACTCGTACATTCTCGTAACATCACTG
195 TACATACATACATACATAC-TGTACTGGTTC-ATATCGAACTCGTACATTCTCGTAACATCACTG
37551914 TGCCCGTTG
258 TGCCCGTTG
* * * * *
37551923 AACACAGTAAGCAATTAGGCTTAGTAAGTTTGTATAATTGCAAATATAACTTACCAATAAACCAT
1 AACAAAGTAAGCAATTAGGCTTAGTAAGTTCGTATAACTGCAAATATAACTTACCAATCAACCAC
* * * *
37551988 AATTAAGCGAGCAATTTAAATTATAATGCAACTCAACTTAGTCTCATTAACATAACATGTAATCA
66 AATTAAGCAAGTAATTTAAATTATAATGCAACTCAATTTAGTCTCATTAACCTAACATGTAATCA
*
37552053 CCAACAAAGTTAATTATGGAATCACAAATTCATAG--A-TC------CAAATTT-TACATGATTT
131 CCAACAAAGTTAATTATGGAATCACAAATTCATAGAAATTCATAGATCCAATTTCTACATGATTT
* * * *
37552108 ACATACATACATAC---CTATACTGGTTCATATTGAACTCGTACATTCTTGGAACATCACTGTGC
196 ACATACATACATACATACTGTACTGGTTCATATCGAACTCGTACATTCTCGTAACATCACTGTGC
37552170 CCGTTG
261 CCGTTG
37552176 CACCATTTGG
Statistics
Matches: 479, Mismatches: 23, Indels: 36
0.89 0.04 0.07
Matches are distributed among these distances:
251 143 0.30
252 1 0.00
253 46 0.10
254 3 0.01
257 24 0.05
258 9 0.02
259 2 0.00
261 4 0.01
262 23 0.05
263 16 0.03
264 2 0.00
266 4 0.01
267 29 0.06
268 173 0.36
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.31
Consensus pattern (266 bp):
AACAAAGTAAGCAATTAGGCTTAGTAAGTTCGTATAACTGCAAATATAACTTACCAATCAACCAC
AATTAAGCAAGTAATTTAAATTATAATGCAACTCAATTTAGTCTCATTAACCTAACATGTAATCA
CCAACAAAGTTAATTATGGAATCACAAATTCATAGAAATTCATAGATCCAATTTCTACATGATTT
ACATACATACATACATACTGTACTGGTTCATATCGAACTCGTACATTCTCGTAACATCACTGTGC
CCGTTG
Found at i:37563567 original size:24 final size:24
Alignment explanation
Indices: 37563522--37563568 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
37563512 ATGTGGAGGG
*
37563522 AATCAAGGAGAAGATTGGGGAGAA
1 AATCAAGGAGAAGATTAGGGAGAA
* *
37563546 AATCAAGGAGAGGATTATGGAGA
1 AATCAAGGAGAAGATTAGGGAGA
37563569 GATTTTAGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.45, C:0.04, G:0.36, T:0.15
Consensus pattern (24 bp):
AATCAAGGAGAAGATTAGGGAGAA
Found at i:37565855 original size:24 final size:25
Alignment explanation
Indices: 37565828--37565883 Score: 67
Period size: 28 Copynumber: 2.1 Consensus size: 25
37565818 TATCAAAGGA
* *
37565828 TTTTAACTATAAACATACTAAAGTT
1 TTTTAACCACAAACATACTAAAGTT
37565853 TTTATCAAACCACAAACATACTAAAGTT
1 TTT-T--AACCACAAACATACTAAAGTT
37565881 TTT
1 TTT
37565884 ATCAAACCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 3 0.12
26 1 0.04
28 22 0.85
ACGTcount: A:0.43, C:0.16, G:0.04, T:0.38
Consensus pattern (25 bp):
TTTTAACCACAAACATACTAAAGTT
Found at i:37565870 original size:28 final size:28
Alignment explanation
Indices: 37565838--37565896 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
37565828 TTTTAACTAT
37565838 AAACATACTAAAGTTTTTATCAAACCAC
1 AAACATACTAAAGTTTTTATCAAACCAC
37565866 AAACATACTAAAGTTTTTATCAAACCAC
1 AAACATACTAAAGTTTTTATCAAACCAC
37565894 AAA
1 AAA
37565897 GGGATTTTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.49, C:0.20, G:0.03, T:0.27
Consensus pattern (28 bp):
AAACATACTAAAGTTTTTATCAAACCAC
Found at i:37575077 original size:91 final size:91
Alignment explanation
Indices: 37574925--37575097 Score: 224
Period size: 91 Copynumber: 1.9 Consensus size: 91
37574915 TCATCCACAT
* * * *
37574925 ATTATCTGGCAACTTCTATCTGTAAAAATGTTATGTATTCATAACCATCTGATAGCGTATTAAAC
1 ATTATCTGGCAACTTCTATATGTAAAAATGTTATGTATTCACAACCATCTGACAGCATATTAAAC
37574990 TACAACC-TTTGGTGGTTCGCCCACCC
66 TAC-ACCTTTTGGTGGTTCGCCCACCC
* * ** * *
37575016 ATTATCTGGCATCTTTTATATGTAATTATGTTATGTATTCACAACTATCT-AGCAGCATATTAAC
1 ATTATCTGGCAACTTCTATATGTAAAAATGTTATGTATTCACAACCATCTGA-CAGCATATTAAA
37575080 CTACACCTTTTGGTGGTT
65 CTACACCTTTTGGTGGTT
37575098 TATCTACAAA
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
90 4 0.06
91 66 0.94
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (91 bp):
ATTATCTGGCAACTTCTATATGTAAAAATGTTATGTATTCACAACCATCTGACAGCATATTAAAC
TACACCTTTTGGTGGTTCGCCCACCC
Found at i:37576876 original size:38 final size:38
Alignment explanation
Indices: 37576791--37576888 Score: 106
Period size: 38 Copynumber: 2.6 Consensus size: 38
37576781 ACAATACAAA
* * *
37576791 AATAGTAGACATGTTTAGCATGTATTCAATTTAACAGT
1 AATAGTAGACATGCTTAACATGTATTCAATTCAACAGT
* * * *
37576829 AACAATAGACATGCTTAACATGTATTCAGTTCAATAGT
1 AATAGTAGACATGCTTAACATGTATTCAATTCAACAGT
** *
37576867 CGTAGTAGACATGCTTCACATG
1 AATAGTAGACATGCTTAACATG
37576889 CTTTTAGTTT
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (38 bp):
AATAGTAGACATGCTTAACATGTATTCAATTCAACAGT
Found at i:37576906 original size:38 final size:38
Alignment explanation
Indices: 37576793--37576906 Score: 104
Period size: 38 Copynumber: 3.0 Consensus size: 38
37576783 AATACAAAAA
* * * * **
37576793 TAGTAGACATGTTTAGCATGTATTCAATTTAACAGTAA
1 TAGTAGACATGCTTAACATGTATTCAGTTCAACAGTCG
* * *
37576831 CAATAGACATGCTTAACATGTATTCAGTTCAATAGTCG
1 TAGTAGACATGCTTAACATGTATTCAGTTCAACAGTCG
* * *
37576869 TAGTAGACATGCTTCACATGCT-TTTAGTTTAACAGTCG
1 TAGTAGACATGCTTAACATG-TATTCAGTTCAACAGTCG
37576907 CAGTGTTAAC
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
38 59 0.98
39 1 0.02
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (38 bp):
TAGTAGACATGCTTAACATGTATTCAGTTCAACAGTCG
Found at i:37580964 original size:126 final size:128
Alignment explanation
Indices: 37580834--37581091 Score: 450
Period size: 126 Copynumber: 2.0 Consensus size: 128
37580824 CATTGCAATC
* *
37580834 AAAATCTTATTAACATTTTATATCGA-TTTTTTATAAATTTATTATATAATTTTTTTCTGGCTAA
1 AAAATCATATTAACATTTTATATCAATTTTTTTATAAATTTATTATATAA-TTTTTTCTGGCTAA
* *
37580898 TTTAGCTATATATGCTGTTTGTTTTTTTAGTTTGTCAATTAGGTTG-TTTTTTTTATTTAGC-A
65 TTTAGCTATATATGATGTTTGTTTTTTTAGTTTGTCAATTAGGCTGTTTTTTTTTATTTAGCGA
37580960 AAAATCATATTAACATTTTATATCAATTTTTTTATAAATTTATTATATAATTTTTTCTGGCTAAT
1 AAAATCATATTAACATTTTATATCAATTTTTTTATAAATTTATTATATAATTTTTTCTGGCTAAT
37581025 TTAGCTATATATGATGTTTGTTTTTTTAGTTTGTCAATTAGGCTGTTTTTTTTTATTTAGCGA
66 TTAGCTATATATGATGTTTGTTTTTTTAGTTTGTCAATTAGGCTGTTTTTTTTTATTTAGCGA
37581088 AAAA
1 AAAA
37581092 AGTTGTTTCT
Statistics
Matches: 125, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
126 82 0.66
127 38 0.30
128 5 0.04
ACGTcount: A:0.28, C:0.07, G:0.10, T:0.55
Consensus pattern (128 bp):
AAAATCATATTAACATTTTATATCAATTTTTTTATAAATTTATTATATAATTTTTTCTGGCTAAT
TTAGCTATATATGATGTTTGTTTTTTTAGTTTGTCAATTAGGCTGTTTTTTTTTATTTAGCGA
Found at i:37580999 original size:12 final size:13
Alignment explanation
Indices: 37580975--37581015 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 13
37580965 CATATTAACA
37580975 TTTTATATCAATTT
1 TTTTATAT-AATTT
37580989 TTTTATA-AA-TT
1 TTTTATATAATTT
*
37581000 TATTATATAATTT
1 TTTTATATAATTT
37581013 TTT
1 TTT
37581016 CTGGCTAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
11 8 0.35
12 4 0.17
13 4 0.17
14 7 0.30
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (13 bp):
TTTTATATAATTT
Found at i:37590209 original size:62 final size:62
Alignment explanation
Indices: 37590133--37590265 Score: 194
Period size: 62 Copynumber: 2.1 Consensus size: 62
37590123 ATACGGGCAA
* * * *
37590133 GGACATGGGCATGTGTCCAGGCCATGTAACTCACTATTTACACTTTAGAACCACACGGCTAG
1 GGACATGGGCATGTGTCCAGGCCATGCAACTCACTATTTACACTTTAGAACCACAAGACCAG
* * * *
37590195 GGACATGGGCATGTGTCCAGGTCGTGCAACTTATTATTTACACTTTAGAACCACAAGACCAG
1 GGACATGGGCATGTGTCCAGGCCATGCAACTCACTATTTACACTTTAGAACCACAAGACCAG
37590257 GGACATGGG
1 GGACATGGG
37590266 TGTGTGCCTA
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (62 bp):
GGACATGGGCATGTGTCCAGGCCATGCAACTCACTATTTACACTTTAGAACCACAAGACCAG
Found at i:37590363 original size:42 final size:41
Alignment explanation
Indices: 37590259--37590363 Score: 102
Period size: 42 Copynumber: 2.5 Consensus size: 41
37590249 AAGACCAGGG
* * * *
37590259 ACATGGGTGTGTGCCTAGGCCGTGTGAGCCATACAGACAAGG
1 ACATGGGTGTGTG-CTAGGCCATGCGAGCCACACAGACAAGC
** * **
37590301 ACATGGGCATGTGCTCAGGCCATGCGAGCGACACAGGTAAGC
1 ACATGGGTGTGTGCT-AGGCCATGCGAGCCACACAGACAAGC
37590343 ACATGGGTGTGTGTCTAGGCC
1 ACATGGGTGTGTG-CTAGGCC
37590364 GTGTGGCATA
Statistics
Matches: 50, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
41 2 0.04
42 46 0.92
43 2 0.04
ACGTcount: A:0.23, C:0.23, G:0.35, T:0.19
Consensus pattern (41 bp):
ACATGGGTGTGTGCTAGGCCATGCGAGCCACACAGACAAGC
Found at i:37590707 original size:16 final size:16
Alignment explanation
Indices: 37590669--37590708 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
37590659 TTAAGTTTGT
*
37590669 TGGTACGCCTCTGTGC
1 TGGTACTCCTCTGTGC
37590685 TGGTACTCCTCTGTGC
1 TGGTACTCCTCTGTGC
37590701 TGGTACTC
1 TGGTACTC
37590709 TGTTGATAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.07, C:0.30, G:0.28, T:0.35
Consensus pattern (16 bp):
TGGTACTCCTCTGTGC
Found at i:37591931 original size:37 final size:37
Alignment explanation
Indices: 37591881--37591959 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
37591871 TTTTTACGAA
* * *
37591881 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
37591918 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
37591955 GTCTT
1 GTCTT
37591960 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:37592204 original size:49 final size:49
Alignment explanation
Indices: 37592082--37592992 Score: 1699
Period size: 49 Copynumber: 18.7 Consensus size: 49
37592072 TCGGGACTTA
* * * * * *
37592082 TCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
37592129 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
37592176 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
37592225 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
37592274 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
37592323 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
37592372 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
37592421 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
37592470 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
37592519 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
37592568 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
37592617 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
37592666 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
37592715 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
37592764 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
37592813 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
37592862 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
*
37592911 TCACATATATATACACTTTCACATTCATCACATATCGGCCATTAGGCCTTA
1 TCACATATATATACACTTTCACATTCATCAC--ATCGGCCATTAGGCCTTG
37592962 TCAC--ATATATACACTTTCACATTCATCACAT
1 TCACATATATATACACTTTCACATTCATCACAT
37592993 AGAATCCTAA
Statistics
Matches: 851, Mismatches: 7, Indels: 12
0.98 0.01 0.01
Matches are distributed among these distances:
46 1 0.00
47 44 0.05
49 785 0.92
51 21 0.02
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.33
Consensus pattern (49 bp):
TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
Found at i:37592993 original size:25 final size:25
Alignment explanation
Indices: 37592917--37592993 Score: 70
Period size: 25 Copynumber: 3.1 Consensus size: 25
37592907 CTTGTCACAT
37592917 ATATATACACTTTCACATTCATCAC
1 ATATATACACTTTCACATTCATCAC
*** * *
37592942 ATATCGGC-CATT-AGGCCTT-ATCAC
1 ATATATACACTTTCA--CATTCATCAC
37592966 ATATATACACTTTCACATTCATCAC
1 ATATATACACTTTCACATTCATCAC
37592991 ATA
1 ATA
37592994 GAATCCTAAA
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
23 1 0.03
24 16 0.43
25 19 0.51
26 1 0.03
ACGTcount: A:0.34, C:0.27, G:0.05, T:0.34
Consensus pattern (25 bp):
ATATATACACTTTCACATTCATCAC
Found at i:37595899 original size:40 final size:40
Alignment explanation
Indices: 37595818--37596712 Score: 1686
Period size: 40 Copynumber: 22.4 Consensus size: 40
37595808 AAACCAAGTA
* * * *
37595818 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACCCGCACAAATG
* **
37595857 CCTTCGGGACTTAGCCCGGATATGGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
*
37595897 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
37595937 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
37595977 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
37596017 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
37596057 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
37596097 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
37596137 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
37596177 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
37596217 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
37596257 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
37596297 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
37596337 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
37596377 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
37596417 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
37596457 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
37596497 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
37596537 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
37596577 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
37596617 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
*
37596657 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
37596697 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
37596713 TGGTTATCAT
Statistics
Matches: 845, Mismatches: 9, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
39 14 0.02
40 831 0.98
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.21
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
Found at i:37603889 original size:40 final size:40
Alignment explanation
Indices: 37603819--37603956 Score: 199
Period size: 40 Copynumber: 3.5 Consensus size: 40
37603809 AAACCAAGTA
* * *
37603819 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAATTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
37603858 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
37603898 CCTTCGAGACTTAGCCCGGGTATAGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37603938 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
37603957 TTATCATCCA
Statistics
Matches: 90, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 14 0.16
40 76 0.84
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:37606712 original size:16 final size:16
Alignment explanation
Indices: 37606691--37606721 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
37606681 AGTGTTTGAT
37606691 CATATGATTCGGCAAA
1 CATATGATTCGGCAAA
37606707 CATATGATTCGGCAA
1 CATATGATTCGGCAA
37606722 TGAGAAATGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.26
Consensus pattern (16 bp):
CATATGATTCGGCAAA
Found at i:37607885 original size:18 final size:17
Alignment explanation
Indices: 37607862--37607908 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 17
37607852 TCCATCTATC
37607862 TTCTTCATGTTTTTTATT
1 TTCTTCAT-TTTTTTATT
37607880 TTCTTC-TTTATTTTATT
1 TTCTTCATTT-TTTTATT
*
37607897 TTGTTCATTTTT
1 TTCTTCATTTTT
37607909 AATTCTTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 2 0.08
17 15 0.58
18 9 0.35
ACGTcount: A:0.11, C:0.11, G:0.04, T:0.74
Consensus pattern (17 bp):
TTCTTCATTTTTTTATT
Found at i:37626282 original size:40 final size:40
Alignment explanation
Indices: 37626234--37626366 Score: 126
Period size: 47 Copynumber: 3.2 Consensus size: 40
37626224 GGACTAAGAT
37626234 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
*
37626274 CCGAAGGCATTTGTGCTAGTGACTATGTCAAATGTCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTG---AT-T---ATATCCGGGCTAAGTC
* * * * *
37626321 CCGAAGGCATTCGTGCGAGTTG-CTATATCC-GGCTAAATT
1 CCGAAGGCATTTGTGCTAG-TGATTATATCCGGGCTAAGTC
37626360 CCGAAGG
1 CCGAAGG
37626367 TACTTGGGTT
Statistics
Matches: 78, Mismatches: 7, Indels: 17
0.76 0.07 0.17
Matches are distributed among these distances:
39 14 0.18
40 26 0.33
43 3 0.04
44 1 0.01
47 32 0.41
48 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
Found at i:37634149 original size:40 final size:40
Alignment explanation
Indices: 37634101--37634997 Score: 1704
Period size: 40 Copynumber: 22.4 Consensus size: 40
37634091 GGACTAAGAT
37634101 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
37634141 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
37634181 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
37634221 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
37634261 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
37634301 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
37634341 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
37634381 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
37634421 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
37634461 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
37634501 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
37634541 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
37634581 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
37634621 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
37634661 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
37634701 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
37634741 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
37634781 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
37634821 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
*
37634861 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
*
37634901 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
* * * ***
37634941 CCGAAAGCATTTGTGCTAGTGACTATGTCAAATGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGATTATATC-CGGGCTAAGTC
*
37634982 CCGAAGGCATTCGTGC
1 CCGAAGGCATTTGTGC
37634998 GAGTTGCTAT
Statistics
Matches: 846, Mismatches: 10, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
40 824 0.97
41 22 0.03
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
Found at i:37637256 original size:42 final size:41
Alignment explanation
Indices: 37637138--37637256 Score: 150
Period size: 43 Copynumber: 2.8 Consensus size: 41
37637128 CATACCAATG
* *
37637138 CCATATCCTAGATATGGTCTTACATGGAATCTCATATCGATT
1 CCATATCCCAGATATGGTCTTACA-CGAATCTCATATCGATT
*
37637180 CCAATAGCCCA-ACTATGGTCTTACACGAAGTCTCATATCGATT
1 CC-ATATCCCAGA-TATGGTCTTACACGAA-TCTCATATCGATT
*
37637223 CCATATCCCAGATATAGTCTTACACGTAATCTCA
1 CCATATCCCAGATATGGTCTTACACG-AATCTCA
37637257 AATAACCCTA
Statistics
Matches: 67, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
42 31 0.46
43 36 0.54
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (41 bp):
CCATATCCCAGATATGGTCTTACACGAATCTCATATCGATT
Found at i:37640374 original size:27 final size:26
Alignment explanation
Indices: 37640343--37640519 Score: 176
Period size: 27 Copynumber: 6.5 Consensus size: 26
37640333 TAAATTGTAC
37640343 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
37640370 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
37640396 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
37640424 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
37640452 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
37640479 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
37640506 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
37640520 AGGCTCAATA
Statistics
Matches: 127, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 101 0.80
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:37640459 original size:82 final size:81
Alignment explanation
Indices: 37640344--37640499 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
37640334 AAATTGTACA
* * *
37640344 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37640408 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37640425 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37640490 TGCGAGTTGA
65 TGCGAATTGA
37640500 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.73
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37640511 original size:82 final size:81
Alignment explanation
Indices: 37640340--37640519 Score: 218
Period size: 82 Copynumber: 2.2 Consensus size: 81
37640330 GATTAAATTG
* * *
37640340 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37640405 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37640421 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37640485 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37640503 TATAGCACTGAGTGTGC
1 TACAGCACTAAGTGTGC
37640520 AGGCTCAATA
Statistics
Matches: 82, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 62 0.76
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37644446 original size:64 final size:64
Alignment explanation
Indices: 37644345--37644472 Score: 256
Period size: 64 Copynumber: 2.0 Consensus size: 64
37644335 TTCGTAGTTG
37644345 TGTTTATTGATGACATCTTGGTCTATTCAAGAGATGAGACCGAACATGCTGAGCATCTGAGGCA
1 TGTTTATTGATGACATCTTGGTCTATTCAAGAGATGAGACCGAACATGCTGAGCATCTGAGGCA
37644409 TGTTTATTGATGACATCTTGGTCTATTCAAGAGATGAGACCGAACATGCTGAGCATCTGAGGCA
1 TGTTTATTGATGACATCTTGGTCTATTCAAGAGATGAGACCGAACATGCTGAGCATCTGAGGCA
37644473 AGTGTTGCAA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 64 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (64 bp):
TGTTTATTGATGACATCTTGGTCTATTCAAGAGATGAGACCGAACATGCTGAGCATCTGAGGCA
Found at i:37652140 original size:40 final size:40
Alignment explanation
Indices: 37652066--37652327 Score: 420
Period size: 40 Copynumber: 6.6 Consensus size: 40
37652056 AACCCAAGTA
* *
37652066 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
*
37652105 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
37652145 CCTTCGGGACTTAGCCCAGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
37652185 CCTTCGGGGCTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
37652225 CCTTCGGGACTTAGCCCAGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
37652265 CCTTCGGGGCTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
37652305 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
37652328 CATTCGAATA
Statistics
Matches: 205, Mismatches: 16, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 12 0.06
40 190 0.93
41 3 0.01
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:37662280 original size:27 final size:27
Alignment explanation
Indices: 37662245--37662301 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
37662235 GGGAATAATC
* *
37662245 GTCATTTTAACATACAGGGGTATTACG
1 GTCACTTTAACATACAGGGGCATTACG
* *
37662272 GTCACTTTACCCTACAGGGGCATTACG
1 GTCACTTTAACATACAGGGGCATTACG
37662299 GTC
1 GTC
37662302 TTTTTACCTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (27 bp):
GTCACTTTAACATACAGGGGCATTACG
Found at i:37662391 original size:27 final size:27
Alignment explanation
Indices: 37662361--37662680 Score: 186
Period size: 27 Copynumber: 11.9 Consensus size: 27
37662351 GGTAAATCTA
* *
37662361 CAAACCAACGGTATTTCAGTAATTTTG
1 CAAATCAAGGGTATTTCAGTAATTTTG
* *
37662388 CAAACCAATGGTATTTCTA-TAATTTTAG
1 CAAATCAAGGGTATTTC-AGTAATTTT-G
* * *
37662416 -AAAGTCAAGGATATTTCTGTAATTATG
1 CAAA-TCAAGGGTATTTCAGTAATTTTG
* * * * *
37662443 TAAATTAGGGGTAATTCTA-TAATTTTC
1 CAAATCAAGGGTATTTC-AGTAATTTTG
* *
37662470 CAAATTAAGGGTATTTCAGTAATTTTC
1 CAAATCAAGGGTATTTCAGTAATTTTG
* ** *
37662497 CAAATCAGGGGTATTTTGGTAATTTTA
1 CAAATCAAGGGTATTTCAGTAATTTTG
** *
37662524 CAAATTGAGGGTATTTCAGTAATTTTA
1 CAAATCAAGGGTATTTCAGTAATTTTG
* *
37662551 CAAGTCAA-GGTATTTC-GATAATTTTA
1 CAAATCAAGGGTATTTCAG-TAATTTTG
* ** ** * *
37662577 TAGGTTGAGGGTATTTCAATAATTTCG
1 CAAATCAAGGGTATTTCAGTAATTTTG
* ** *
37662604 CAAA-CTAGGGGTATTTTGGTAATTTTA
1 CAAATC-AAGGGTATTTCAGTAATTTTG
* **
37662631 CAAATCAGGGGTATTTTGGTAATTTTG
1 CAAATCAAGGGTATTTCAGTAATTTTG
* *
37662658 TAAACCAAGGGTA-TTCAGTAATT
1 CAAATCAAGGGTATTTCAGTAATT
37662681 CTACCCTACA
Statistics
Matches: 228, Mismatches: 53, Indels: 25
0.75 0.17 0.08
Matches are distributed among these distances:
25 1 0.00
26 29 0.13
27 176 0.77
28 22 0.10
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
CAAATCAAGGGTATTTCAGTAATTTTG
Found at i:37662547 original size:81 final size:81
Alignment explanation
Indices: 37662370--37662656 Score: 194
Period size: 80 Copynumber: 3.5 Consensus size: 81
37662360 ACAAACCAAC
* * *
37662370 GGTATTTCAGTAATTTTGCAAACCAATGGTATTTCTA-TAATTTTAGAAAGTCAAGGATATTTCT
1 GGTATTTCAGTAATTTTACAAATCAA-GGTATTTC-AGTAATTTTACAAAGTCAAGGATATTTCT
**
37662434 GTAATTATGTAAATTAGG
64 GTAATTATACAAATTAGG
* * * * * *
37662452 GGTAATTCTA-TAATTTTCCAAATTAAGGGTATTTCAGTAATTTTCCAAA-TCAGGGGTATTT-T
1 GGTATTTC-AGTAATTTTACAAATCAA-GGTATTTCAGTAATTTTACAAAGTCAAGGATATTTCT
*
37662514 GGTAATTTTACAAATT-GAG
64 -GTAATTATACAAATTAG-G
* * * ** * **
37662533 GGTATTTCAGTAATTTTACAAGTCAAGGTATTTC-GATAATTTTA-TAGGTTGAGGGTATTTCAA
1 GGTATTTCAGTAATTTTACAAATCAAGGTATTTCAG-TAATTTTACAAAGTCAAGGATATTTCTG
* *
37662596 TAATT-TCGCAAACTAGG
65 TAATTAT-ACAAATTAGG
** * **
37662613 GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTT
1 GGTATTTCAGTAATTTTACAAATCA-AGGTATTTCAGTAATTTT
37662657 GTAAACCAAG
Statistics
Matches: 162, Mismatches: 31, Indels: 25
0.74 0.14 0.11
Matches are distributed among these distances:
79 3 0.02
80 60 0.37
81 59 0.36
82 39 0.24
83 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (81 bp):
GGTATTTCAGTAATTTTACAAATCAAGGTATTTCAGTAATTTTACAAAGTCAAGGATATTTCTGT
AATTATACAAATTAGG
Found at i:37662667 original size:107 final size:108
Alignment explanation
Indices: 37662477--37662672 Score: 265
Period size: 107 Copynumber: 1.8 Consensus size: 108
37662467 TTCCAAATTA
* *
37662477 AGGGTATTTCAGTAATTTTCCAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCA
1 AGGGTATTTCAATAATTTTCCAAATCAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCA
**
37662542 GTAATTTTACAAGTCAA-GGTATTTCGATAATTTTATAGGTTG
66 GTAATTTTACAAACCAAGGGTATTTCGATAATTTTATAGGTTG
37662584 AGGGTATTTCAATAA-TTTCGCAAA-CTAGGGGTATTTTGGTAATTTTACAAATCAG-GGGTATT
1 AGGGTATTTCAATAATTTTC-CAAATC-AGGGGTATTTTGGTAATTTTACAAAT-AGAGGGTATT
** **
37662646 TTGGTAATTTTGTAAACCAAGGGTATT
63 TCAGTAATTTTACAAACCAAGGGTATT
37662673 CAGTAATTCT
Statistics
Matches: 77, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
106 5 0.06
107 65 0.84
108 7 0.09
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (108 bp):
AGGGTATTTCAATAATTTTCCAAATCAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCA
GTAATTTTACAAACCAAGGGTATTTCGATAATTTTATAGGTTG
Found at i:37662670 original size:54 final size:54
Alignment explanation
Indices: 37662339--37662672 Score: 242
Period size: 54 Copynumber: 6.2 Consensus size: 54
37662329 ATTTCACCTA
* * * * * *
37662339 CAAGGGTGTTTTGGTAAATCTACAAACCAACGGTATTTCAGTAATTTTGCAAAC
1 CAAGGGTATTTTGATAATTTTACAAATCAAGGGTATTTCAGTAATTTTGCAAAC
* * * * * * *
37662393 CAATGGTATTTCT-ATAATTTTAGAAAGTCAAGGATATTTCTGTAATTATGTAAAT
1 CAAGGGTATTT-TGATAATTTTACAAA-TCAAGGGTATTTCAGTAATTTTGCAAAC
* * * * * * *
37662448 TAGGGGTAATTCT-ATAATTTTCCAAATTAAGGGTATTTCAGTAATTTTCCAAAT
1 CAAGGGT-ATTTTGATAATTTTACAAATCAAGGGTATTTCAGTAATTTTGCAAAC
* * ** * **
37662502 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAAGT
1 CAAGGGTATTTTGATAATTTTACAAATCAAGGGTATTTCAGTAATTTTGCAAAC
* * ** ** * *
37662556 CAA-GGTATTTCGATAATTTTATAGGTTGAGGGTATTTCAATAATTTCGCAAAC
1 CAAGGGTATTTTGATAATTTTACAAATCAAGGGTATTTCAGTAATTTTGCAAAC
* * * * ** *
37662609 TAGGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGATAATTTTACAAATCAAGGGTATTTCAGTAATTTTGCAAAC
37662663 CAAGGGTATT
1 CAAGGGTATT
37662673 CAGTAATTCT
Statistics
Matches: 215, Mismatches: 60, Indels: 10
0.75 0.21 0.04
Matches are distributed among these distances:
53 45 0.21
54 129 0.60
55 38 0.18
56 3 0.01
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (54 bp):
CAAGGGTATTTTGATAATTTTACAAATCAAGGGTATTTCAGTAATTTTGCAAAC
Found at i:37662745 original size:27 final size:26
Alignment explanation
Indices: 37662670--37662745 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 26
37662660 AACCAAGGGT
*
37662670 ATTCAGTAATTCTACCCTACAAAGGA
1 ATTCAGTAATTCTACCCTACAGAGGA
*
37662696 ATTTCAGTAATTCTACCCTACAGGGGCA
1 A-TTCAGTAATTCTACCCTACAGAGG-A
* *
37662724 ATTCAGTAATACTAGCCTACAG
1 ATTCAGTAATTCTACCCTACAG
37662746 TATGAGATTC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 1 0.02
27 41 0.93
28 2 0.05
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (26 bp):
ATTCAGTAATTCTACCCTACAGAGGA
Found at i:37674231 original size:17 final size:17
Alignment explanation
Indices: 37674209--37674242 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
37674199 GGTAAGTATA
*
37674209 TATTGTCATTGCATTTT
1 TATTGTCATTACATTTT
37674226 TATTGTCATTACATTTT
1 TATTGTCATTACATTTT
37674243 CATGTTAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (17 bp):
TATTGTCATTACATTTT
Found at i:37679513 original size:20 final size:20
Alignment explanation
Indices: 37679475--37679513 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
37679465 AAATAGGGTT
*
37679475 ACACGCACATCTGGCTTGGA
1 ACACGCACATCTGGATTGGA
* *
37679495 ACACGCCCATGTGGATTGG
1 ACACGCACATCTGGATTGG
37679514 CCGTGTGGTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (20 bp):
ACACGCACATCTGGATTGGA
Found at i:37681444 original size:30 final size:29
Alignment explanation
Indices: 37681408--37681468 Score: 113
Period size: 30 Copynumber: 2.1 Consensus size: 29
37681398 AAACGAAAGT
37681408 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTT-AACTAGC
37681438 TTTGGCACTAAGTGTGCGATTTAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAACTAGC
37681467 TT
1 TT
37681469 CGGTTACTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 9 0.29
30 22 0.71
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (29 bp):
TTTGGCACTAAGTGTGCGATTTAACTAGC
Found at i:37687132 original size:9 final size:9
Alignment explanation
Indices: 37687118--37687143 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
37687108 ATTTATTTAA
37687118 TAAATTATT
1 TAAATTATT
37687127 TAAATTATT
1 TAAATTATT
37687136 TAAATTAT
1 TAAATTAT
37687144 AAAATTCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (9 bp):
TAAATTATT
Found at i:37689096 original size:19 final size:19
Alignment explanation
Indices: 37689074--37689111 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
37689064 TCATTGTCAC
*
37689074 CCACTATAATCAAATTTGT
1 CCACCATAATCAAATTTGT
*
37689093 CCACCGTAATCAAATTTGT
1 CCACCATAATCAAATTTGT
37689112 TACTAACTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.34, C:0.24, G:0.08, T:0.34
Consensus pattern (19 bp):
CCACCATAATCAAATTTGT
Found at i:37689929 original size:3 final size:3
Alignment explanation
Indices: 37689923--37689971 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
37689913 AAACTCTTTT
37689923 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
37689971 T
1 T
37689972 TTCATTAAGA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:37690187 original size:40 final size:39
Alignment explanation
Indices: 37690114--37690476 Score: 188
Period size: 40 Copynumber: 9.3 Consensus size: 39
37690104 CGTTTAGATA
* *
37690114 AAAAATGCTGCTATAGATCGAGCATTAGCGTGCTTCTTG
1 AAAAATGCCGCTATAGATCGAGCATTAGCGTGCTTTTTG
* * *
37690153 AAAAACGCCGCTATAGATCAAGTATTAGCGGTGCTTTTTG
1 AAAAATGCCGCTATAGATCGAGCATTAGC-GTGCTTTTTG
* * *
37690193 AAAAATGCCGTTATAGATTGAGCATTAGCAGTGCTTTTTA
1 AAAAATGCCGCTATAGATCGAGCATTAGC-GTGCTTTTTG
* * * * * *
37690233 AAAAATGCCTCTATAGGTTGACCATTAGTGTCGCTTTTCG
1 AAAAATGCCGCTATAGATCGAGCATTAGCGT-GCTTTTTG
* * * ** * * ** *
37690273 AAAAATGCCGCAAAAAAAATTAAGCA-CAACGCCCATTTT-
1 AAAAATGCCGC--TATAGATCGAGCATTAGCGTGCTTTTTG
*** * *
37690312 -ATGTTG--GTCTTTAG-T-G-GCATTAGC-TGCGCTTTTG
1 AAAAATGCCG-CTATAGATCGAGCATTAGCGTGC-TTTTTG
* ** *
37690346 AAAAACGCCATTATAGATCGAGCATTAGCGATGCTTTCTG
1 AAAAATGCCGCTATAGATCGAGCATTAGCG-TGCTTTTTG
** *
37690386 AAAAACACCGCTATAGATCGAGCATTAGCG-GCACTTTTTT
1 AAAAATGCCGCTATAGATCGAGCATTAGCGTG--CTTTTTG
* * * *
37690426 AAAAATGCCGCTATAGGTCAACCATTAGCAGCGCTTTTTG
1 AAAAATGCCGCTATAGATCGAGCATTAGC-GTGCTTTTTG
*
37690466 AAAAACGCCGC
1 AAAAATGCCGC
37690477 AAAAAAATTA
Statistics
Matches: 237, Mismatches: 67, Indels: 39
0.69 0.20 0.11
Matches are distributed among these distances:
32 4 0.02
33 6 0.03
34 1 0.00
35 3 0.01
36 5 0.02
37 2 0.01
38 5 0.02
39 35 0.15
40 162 0.68
41 6 0.03
42 8 0.03
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (39 bp):
AAAAATGCCGCTATAGATCGAGCATTAGCGTGCTTTTTG
Found at i:37690478 original size:193 final size:192
Alignment explanation
Indices: 37690135--37690497 Score: 487
Period size: 193 Copynumber: 1.9 Consensus size: 192
37690125 TATAGATCGA
* * * * * **
37690135 GCATTAGCGTGCTTCTTGAAAAACGCCGCTATAGATCAAGTATTAGCGGTGCTTTTTGAAAAATG
1 GCATTAGCGCGCTTCTTGAAAAACGCCACTATAGATCAAGCATTAGCGATGCTTTCTGAAAAACA
* * ** * ** *
37690200 CCGTTATAGATTGAGCATTAGCAGTGCTTTTTAAAAAATGCCTCTATAGGTTGACCATTAGTGTC
66 CCGCTATAGATCGAGCATTAGCAGCACTTTTTAAAAAATGCCGCTATAGGTCAACCATTAGAGTC
* *
37690265 GCTTTTCGAAAAATGCCGCAAAAAAAATTAAGCACAACGCCCATTTTATGTTGGTCTTTAGTG
131 GCTTTTCGAAAAACGCCGC-AAAAAAATTAAACACAACGCCCATTTTATGTTGGTCTTTAGTG
* *
37690328 GCATTAGCTGCGCTT-TTGAAAAACGCCATTATAGATCGAGCATTAGCGATGCTTTCTGAAAAAC
1 GCATTAGC-GCGCTTCTTGAAAAACGCCACTATAGATCAAGCATTAGCGATGCTTTCTGAAAAAC
* *
37690392 ACCGCTATAGATCGAGCATTAGCGGCACTTTTTTAAAAATGCCGCTATAGGTCAACCATTAGCAG
65 ACCGCTATAGATCGAGCATTAGCAGCACTTTTTAAAAAATGCCGCTATAGGTCAACCATTAG-AG
*
37690457 -CGCTTTTTGAAAAACGCCGCAAAAAAATTAAACACAACGCC
129 TCGCTTTTCGAAAAACGCCGCAAAAAAATTAAACACAACGCC
37690498 GCTATTTGCT
Statistics
Matches: 146, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
192 20 0.14
193 120 0.82
194 6 0.04
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (192 bp):
GCATTAGCGCGCTTCTTGAAAAACGCCACTATAGATCAAGCATTAGCGATGCTTTCTGAAAAACA
CCGCTATAGATCGAGCATTAGCAGCACTTTTTAAAAAATGCCGCTATAGGTCAACCATTAGAGTC
GCTTTTCGAAAAACGCCGCAAAAAAATTAAACACAACGCCCATTTTATGTTGGTCTTTAGTG
Found at i:37691053 original size:14 final size:14
Alignment explanation
Indices: 37691036--37691096 Score: 50
Period size: 14 Copynumber: 4.3 Consensus size: 14
37691026 ATGTTTATTA
37691036 TTTTGGGTTTATGG
1 TTTTGGGTTTATGG
* **
37691050 TTTTGTGTTTTAAAG
1 TTTTG-GGTTTATGG
* *
37691065 TTTAGGGTTTATGA
1 TTTTGGGTTTATGG
* *
37691079 TTTGGGGTTTAGGG
1 TTTTGGGTTTATGG
37691093 TTTT
1 TTTT
37691097 ATAGTTAGGG
Statistics
Matches: 34, Mismatches: 12, Indels: 2
0.71 0.25 0.04
Matches are distributed among these distances:
14 24 0.71
15 10 0.29
ACGTcount: A:0.13, C:0.00, G:0.31, T:0.56
Consensus pattern (14 bp):
TTTTGGGTTTATGG
Found at i:37691107 original size:21 final size:21
Alignment explanation
Indices: 37691083--37691138 Score: 69
Period size: 23 Copynumber: 2.6 Consensus size: 21
37691073 TTATGATTTG
37691083 GGGTTT-AGGGTTTTATAGTTA
1 GGGTTTAAGGGTTTTATA-TTA
*
37691104 GGGTTTTAAGGGTTTGAGTATTA
1 GGG-TTTAAGGGTTTTA-TATTA
37691127 GGGTTTAAGGGT
1 GGGTTTAAGGGT
37691139 AATTGATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
21 3 0.10
22 12 0.39
23 14 0.45
24 2 0.06
ACGTcount: A:0.20, C:0.00, G:0.38, T:0.43
Consensus pattern (21 bp):
GGGTTTAAGGGTTTTATATTA
Found at i:37691111 original size:22 final size:22
Alignment explanation
Indices: 37691065--37691138 Score: 64
Period size: 22 Copynumber: 3.4 Consensus size: 22
37691055 TGTTTTAAAG
* *
37691065 TTTAGGG-TTTAT-GATTTGGGG
1 TTTAGGGTTTTATAG-TTAGGGT
37691086 TTTAGGGTTTTATAGTTAGGGT
1 TTTAGGGTTTTATAGTTAGGGT
*
37691108 TTTAAGGGTTTGAGTA-TTAGGGT
1 TTT-AGGGTTTTA-TAGTTAGGGT
*
37691131 TTAAGGGT
1 TTTAGGGT
37691139 AATTGATTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
21 7 0.16
22 18 0.40
23 18 0.40
24 2 0.04
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.46
Consensus pattern (22 bp):
TTTAGGGTTTTATAGTTAGGGT
Found at i:37691550 original size:17 final size:17
Alignment explanation
Indices: 37691528--37691561 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
37691518 ATCACATGTT
37691528 GTAAACATCAAAAATAA
1 GTAAACATCAAAAATAA
37691545 GTAAACATCAAAAATAA
1 GTAAACATCAAAAATAA
37691562 AATTAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.65, C:0.12, G:0.06, T:0.18
Consensus pattern (17 bp):
GTAAACATCAAAAATAA
Found at i:37696317 original size:49 final size:49
Alignment explanation
Indices: 37696260--37696353 Score: 188
Period size: 49 Copynumber: 1.9 Consensus size: 49
37696250 TGTGTTAAAT
37696260 AAATGACACAAGGAAGCTTGTAGTCTAGTGGTTGTGGCGTCATTACAAA
1 AAATGACACAAGGAAGCTTGTAGTCTAGTGGTTGTGGCGTCATTACAAA
37696309 AAATGACACAAGGAAGCTTGTAGTCTAGTGGTTGTGGCGTCATTA
1 AAATGACACAAGGAAGCTTGTAGTCTAGTGGTTGTGGCGTCATTA
37696354 AGGTTGTATG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (49 bp):
AAATGACACAAGGAAGCTTGTAGTCTAGTGGTTGTGGCGTCATTACAAA
Found at i:37697121 original size:27 final size:27
Alignment explanation
Indices: 37697075--37697150 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
37697065 ATTATTGAAA
* * *
37697075 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTATAGAATTACCAAAG
* ***
37697102 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCAAAG
37697129 TACCCTCGATTTATAGAATTAC
1 TACCCTCGATTTATAGAATTAC
37697151 TGTTTTACCC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.36
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCAAAG
Found at i:37697149 original size:54 final size:54
Alignment explanation
Indices: 37697075--37697231 Score: 161
Period size: 54 Copynumber: 2.9 Consensus size: 54
37697065 ATTATTGAAA
* * * * * * *
37697075 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTAAAATACCCTCGATTTACAAAATTACTATTC
* **** * *
37697129 TACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAAAATTACTGTTC
1 TACCCTCGATTTATAAAATTACTAAAATACCCTCGATTTACAAAATTACTATTC
* * *
37697183 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTAC
1 TACCCTCGATTTATAAAATTACTAAAATACCCTCGATTTACAAAATTAC
37697232 CAAAATACCC
Statistics
Matches: 83, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 83 1.00
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACTAAAATACCCTCGATTTACAAAATTACTATTC
Found at i:37697151 original size:27 final size:27
Alignment explanation
Indices: 37697102--37697231 Score: 143
Period size: 27 Copynumber: 4.8 Consensus size: 27
37697092 ATTACCAAAG
* *
37697102 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
37697129 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
37697156 TACCCTTGATTTACAAAATTACTGTTC
1 TACCCTCGATTTACAAAATTACTATTT
***
37697183 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTATTT
* *
37697210 TACCCTTGGTTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
37697232 CAAAATACCC
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 91 1.00
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:37697236 original size:27 final size:27
Alignment explanation
Indices: 37697156--37697347 Score: 147
Period size: 27 Copynumber: 7.1 Consensus size: 27
37697146 ATTACTGTTT
* *****
37697156 TACCCTTGATTTACAAAATTACTGTTC
1 TACCCTTGGTTTACAAAATTACCAAAA
* * *
37697183 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
37697210 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* * *
37697237 TACCC-TCGATCAGCAAAATTACCAAAA
1 TACCCTTGGTTTA-CAAAATTACCAAAA
* * * *
37697264 TACCCTAGCTTGT--AAAATTGCTAAAA
1 TACCCTTGGTT-TACAAAATTACCAAAA
* *
37697290 TACCCCTGGTTTATAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* * **
37697317 TACCCATAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
37697344 TACC
1 TACC
37697348 ACTAGTTTGT
Statistics
Matches: 134, Mismatches: 26, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
25 1 0.01
26 23 0.17
27 109 0.81
28 1 0.01
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACCAAAA
Found at i:37697241 original size:54 final size:54
Alignment explanation
Indices: 37697156--37697347 Score: 167
Period size: 54 Copynumber: 3.6 Consensus size: 54
37697146 ATTACTGTTT
* ***** *
37697156 TACCCTTGATTTACAAAATTACTGTTCTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAA
*
37697210 TACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-TCAGCAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTTA-CAAAATTACCAAAA
* * * * * *
37697264 TACCCTAGCTTGT--AAAATTGCTAAAATACCC-CTGGTTTATAAAATTACCAAAA
1 TACCCTTGGTT-TACAAAATTACCAAAATACCCTC-GATTTACAAAATTACCAAAA
* * **
37697317 TACCCATAGTTTGTAAAATTACCAAAATACC
1 TACCCTTGGTTTACAAAATTACCAAAATACC
37697348 ACTAGTTTGT
Statistics
Matches: 111, Mismatches: 21, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
52 2 0.02
53 39 0.35
54 69 0.62
55 1 0.01
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (54 bp):
TACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAA
Found at i:37697308 original size:80 final size:80
Alignment explanation
Indices: 37697197--37697398 Score: 237
Period size: 80 Copynumber: 2.5 Consensus size: 80
37697187 CTCGATTTAC
* *
37697197 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCC-TCGATCAGCAAAATTACCA
1 AAAATT-CTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCATAG-TCAGCAAAATTACCA
37697261 AAATACC-CTAGCTTGT
64 AAATACCACTAGCTTGT
* ** *
37697277 AAAATTGCTAAAATACCCCTGGTTTATAAAATTACCAAAATACCCATAGTTTGTAAAATTACCAA
1 AAAATT-CTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCATAGTCAGCAAAATTACCAA
*
37697342 AATACCACTAGTTTGT
65 AATACCACTAGCTTGT
* * * ** *
37697358 GAAATTATCGAAATACCCTTAATTTGTAAAATTACCAAAAT
1 AAAATTCT-AAAATACCCTTGGTTTATAAAATTACCAAAAT
37697399 TACAGAAATA
Statistics
Matches: 104, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
80 62 0.60
81 42 0.40
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (80 bp):
AAAATTCTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCATAGTCAGCAAAATTACCAAA
ATACCACTAGCTTGT
Found at i:37697353 original size:27 final size:26
Alignment explanation
Indices: 37697197--37697398 Score: 197
Period size: 27 Copynumber: 7.5 Consensus size: 26
37697187 CTCGATTTAC
* * **
37697197 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCC-TAGTTTGT
* ** *
37697224 AAAATTACCAAAATACCCTCGATCAGC
1 AAAATTACCAAAATACCCTAG-TTTGT
*
37697251 AAAATTACCAAAATACCCTAGCTTGT
1 AAAATTACCAAAATACCCTAGTTTGT
* * * *
37697277 AAAATTGCTAAAATACCCCTGGTTTAT
1 AAAATTACCAAAATA-CCCTAGTTTGT
37697304 AAAATTACCAAAATACCCATAGTTTGT
1 AAAATTACCAAAATACCC-TAGTTTGT
37697331 AAAATTACCAAAATACCACTAGTTTGT
1 AAAATTACCAAAATACC-CTAGTTTGT
* * * *
37697358 GAAATTATCGAAATACCCTTAATTTGT
1 AAAATTACCAAAATACCC-TAGTTTGT
37697385 AAAATTACCAAAAT
1 AAAATTACCAAAAT
37697399 TACAGAAATA
Statistics
Matches: 144, Mismatches: 26, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
26 20 0.14
27 123 0.85
28 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTAGTTTGT
Found at i:37697570 original size:27 final size:27
Alignment explanation
Indices: 37697528--37697592 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
37697518 ACCCTTATTA
* * *
37697528 GGTAAAAAGACTGTAA-AGCCCTGGTAG
1 GGTAAAATGACCGTAATACCCCT-GTAG
* *
37697555 GGTAAAGTGACCGTAATACCCCTGTAT
1 GGTAAAATGACCGTAATACCCCTGTAG
37697582 GGTAAAATGAC
1 GGTAAAATGAC
37697593 GAATATGCCC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 26 0.84
28 5 0.16
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTAG
Found at i:37698018 original size:59 final size:59
Alignment explanation
Indices: 37697951--37698066 Score: 216
Period size: 59 Copynumber: 2.0 Consensus size: 59
37697941 TGGGCTTCGG
37697951 GCCCATTTGGGTAAAACTGATAGAAAATGGAATCTGGAAAAGTTT-CATGTTAACACGAA
1 GCCCATTTGGGTAAAACTGATAGAAAATGGAATCTGGAAAA-TTTGCATGTTAACACGAA
37698010 GCCCATTTGGGTAAAACTGATAGAAAATGGAATCTGGAAAATTTGCATGTTAACACG
1 GCCCATTTGGGTAAAACTGATAGAAAATGGAATCTGGAAAATTTGCATGTTAACACG
37698067 GTTAGCACTG
Statistics
Matches: 56, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
58 3 0.05
59 53 0.95
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.26
Consensus pattern (59 bp):
GCCCATTTGGGTAAAACTGATAGAAAATGGAATCTGGAAAATTTGCATGTTAACACGAA
Found at i:37698498 original size:25 final size:24
Alignment explanation
Indices: 37698460--37698554 Score: 111
Period size: 25 Copynumber: 3.9 Consensus size: 24
37698450 AGGAAGTGCT
*
37698460 AAAAGGGCTATGCCCCAGTATACCG
1 AAAAGGGCTTTGCCCCAGT-TACCG
**
37698485 AAAAGGGCTTTGCCTTAGTTTACCG
1 AAAAGGGCTTTGCCCCAG-TTACCG
*
37698510 AAAAGGGCTTTGCCCCAGCTTATC-
1 AAAAGGGCTTTGCCCCAG-TTACCG
*
37698534 AAAAGGGTTTTGCCCCAGTTA
1 AAAAGGGCTTTGCCCCAGTTA
37698555 TTAAAAGAGG
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
23 3 0.05
24 17 0.28
25 40 0.66
26 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTACCG
Found at i:37698545 original size:24 final size:23
Alignment explanation
Indices: 37698460--37698566 Score: 97
Period size: 25 Copynumber: 4.4 Consensus size: 23
37698450 AGGAAGTGCT
* *
37698460 AAAAGGGCTATGCCCCAGTATACC
1 AAAAGGGCTTTGCCCCAGT-TATC
** *
37698484 GAAAAGGGCTTTGCCTTAGTTTACC
1 -AAAAGGGCTTTGCCCCAG-TTATC
37698509 GAAAAGGGCTTTGCCCCAGCTTATC
1 -AAAAGGGCTTTGCCCCAG-TTATC
* *
37698534 AAAAGGGTTTTGCCCCAGTTATT
1 AAAAGGGCTTTGCCCCAGTTATC
37698557 AAAAGAGGCT
1 AAAAG-GGCT
37698567 AGGCCTCCAG
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
23 9 0.13
24 20 0.29
25 40 0.57
26 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.25
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATC
Found at i:37698807 original size:31 final size:31
Alignment explanation
Indices: 37698772--37698848 Score: 127
Period size: 31 Copynumber: 2.5 Consensus size: 31
37698762 CATTTACAGT
37698772 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
*
37698803 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
* *
37698834 TAAGGCTTTGGCCCA
1 AAAGGCTTCGGCCCA
37698849 TGGGCTTGCA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATGATATGATTTATGA
Found at i:37701408 original size:27 final size:27
Alignment explanation
Indices: 37701278--37701409 Score: 183
Period size: 27 Copynumber: 4.9 Consensus size: 27
37701268 ATTACCAAAG
*
37701278 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACTATTT
**
37701305 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTATTT
*
37701332 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACTATTT
* * *
37701359 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTATTT
* *
37701386 TACCCTCGATTTACAAAATTACTA
1 TACCCTCGATTTATAGAATTACTA
37701410 AAATACCTTT
Statistics
Matches: 96, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTATTT
Found at i:37701416 original size:27 final size:27
Alignment explanation
Indices: 37701332--37701689 Score: 133
Period size: 27 Copynumber: 13.2 Consensus size: 27
37701322 ATTACCGTTT
* * * ***
37701332 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ****
37701359 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
37701386 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * * *
37701413 TACCTTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* *
37701440 TACCCTCGA-TCAGCAAAATTACAAAAA
1 TACCCTCGATTTA-CAAAATTACTAAAA
* * **
37701467 TACCCTAG-TCTGTAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** * *
37701493 TACCC-CTGGTTTGTAAAATTTCCAAAA
1 TACCCTC-GATTTACAAAATTACTAAAA
* ** *
37701520 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
***
37701547 TACCACT-GATTTGTGAAATTA-TCAAAA
1 TACC-CTCGATTTACAAAATTACT-AAAA
* ** *
37701574 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* *
37701601 TACCC-CTAATCTACAAAATTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
37701628 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * * *
37701657 TACCATTGGTTAACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
37701684 TACCCT
1 TACCCT
37701690 TGGTTTGTAG
Statistics
Matches: 265, Mismatches: 47, Indels: 38
0.76 0.13 0.11
Matches are distributed among these distances:
26 24 0.09
27 214 0.81
28 7 0.03
29 20 0.08
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:37701426 original size:54 final size:54
Alignment explanation
Indices: 37701278--37701472 Score: 158
Period size: 54 Copynumber: 3.6 Consensus size: 54
37701268 ATTACCAAAG
* * * *** * *
37701278 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTACAGAATTACCGTTT
* * * *** *
37701332 TACCCTTGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTACAGAATTACCGTTT
* * * ****
37701386 TACCCTCGATTTACAAAATTACTAAAATACCTTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTACAGAATTACCGTTT
* *
37701440 TACCCTCGA-TCAGCAAAATTACAAAAATACCCT
1 TACCCTCGATTTA-CAAAATTACTAAAATACCCT
37701473 AGTCTGTAAA
Statistics
Matches: 118, Mismatches: 22, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
53 2 0.02
54 116 0.98
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTACAGAATTACCGTTT
Found at i:37701444 original size:81 final size:81
Alignment explanation
Indices: 37701265--37701449 Score: 190
Period size: 81 Copynumber: 2.3 Consensus size: 81
37701255 TTTGACTTGT
* * * * **
37701265 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGT
1 AAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCAA
** *
37701330 TTTACCCTTGATTTAT
66 AATACCCTTGATTTAC
* * *** * ** *
37701346 AGAATTACTATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAA
1 AAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCAA
* *
37701411 AATACCTTTGGTTTAC
66 AATACCCTTGATTTAC
37701427 AAAATTACCAAAATACCCTCGAT
1 AAAATTACCAAAATACCCTCGAT
37701450 CAGCAAAATT
Statistics
Matches: 79, Mismatches: 25, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.37
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCAA
AATACCCTTGATTTAC
Found at i:37701471 original size:81 final size:78
Alignment explanation
Indices: 37701386--37701688 Score: 216
Period size: 81 Copynumber: 3.7 Consensus size: 78
37701376 ATTACTGTTT
* * *
37701386 TACCCTCGATTTACAAAATTACTAAAATACCTTTGGTTTACAAAATTACCAAAATACCCTCGATC
1 TACCCT-GATTTGCAAAATTA-TAAAATACCCTTGGTTTACAAAATTACCAAAATACCC-CAATC
37701451 AGCAAAATTACAAAAA
63 AGCAAAATTACAAAAA
* * * ** * * *
37701467 TACCCT-AGTCTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTTCCAAAATACCCCTAGTT
1 TACCCTGA-TTTGCAAAATTA-TAAAATACCCTTGGTTTACAAAATTACCAAAATACCCC-AATC
* * *
37701531 TGTAAAATTACCAAAA
63 AGCAAAATTACAAAAA
** *** **
37701547 TACCACTGATTTGTGAAATTATCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATC
1 TACC-CTGATTTGCAAAATTAT-AAAATACCCTTGGTTTACAAAATTACCAAAATACCCC-AATC
*
37701612 TA-CAAAATTACAGAAA
63 -AGCAAAATTACAAAAA
* * **
37701628 TACCCTTGACTTT-CTAAAAATTATAGAAATACCATTGGTTAACAAAATTACTGAAATACCC
1 TACCC-TGA-TTTGC--AAAATTATA-AAATACCCTTGGTTTACAAAATTACCAAAATACCC
37701689 TTGGTTTGTA
Statistics
Matches: 173, Mismatches: 38, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
79 2 0.01
80 62 0.36
81 71 0.41
82 5 0.03
83 33 0.19
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.29
Consensus pattern (78 bp):
TACCCTGATTTGCAAAATTATAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCAATCAGC
AAAATTACAAAAA
Found at i:37701547 original size:54 final size:53
Alignment explanation
Indices: 37701427--37701607 Score: 213
Period size: 54 Copynumber: 3.4 Consensus size: 53
37701417 TTTGGTTTAC
** * * * *
37701427 AAAATTACCAAAATA-CCCTCGATCAGCAAAATTACAAAAATACCCTAGTCTGT
1 AAAATTACCAAAATACCCCT-GATTTGTAAAATTTCCAAAATACCCTAGTTTGT
* *
37701480 AAAATTACTAAAATACCCCTGGTTTGTAAAATTTCCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTTCCAAAATA-CCCTAGTTTGT
* * *
37701534 AAAATTACCAAAATACCACTGATTTGTGAAATTAT-CAAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCCTGATTTGTAAAATT-TCCAAAATACCCT-AGTTTGT
37701588 AAAATTACCAAAATACCCCT
1 AAAATTACCAAAATACCCCT
37701608 AATCTACAAA
Statistics
Matches: 110, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
53 34 0.31
54 75 0.68
55 1 0.01
ACGTcount: A:0.43, C:0.22, G:0.07, T:0.28
Consensus pattern (53 bp):
AAAATTACCAAAATACCCCTGATTTGTAAAATTTCCAAAATACCCTAGTTTGT
Found at i:37701620 original size:54 final size:53
Alignment explanation
Indices: 37701388--37701633 Score: 203
Period size: 54 Copynumber: 4.5 Consensus size: 53
37701378 TACTGTTTTA
* * ** **
37701388 CCCTCGATTTACAAAATTACTAAAATACCTTTGGTTTACAAAATTACCAAAATA-
1 CCCT-GATCTACAAAATTAC-AAAATACCCTCAGTTTGTAAAATTACCAAAATAC
* *
37701442 CCCTCGATC-AGCAAAATTACAAAAATACCCT-AGTCTGTAAAATTACTAAAATAC
1 CCCT-GATCTA-CAAAATTAC-AAAATACCCTCAGTTTGTAAAATTACCAAAATAC
* * ** *
37701496 CCCTGGTTTGTAAAATTTCCAAAATACCC-CTAGTTTGTAAAATTACCAAAATAC
1 CCCTGATCTACAAAA-TTACAAAATACCCTC-AGTTTGTAAAATTACCAAAATAC
* * *** *
37701550 CACTGATTTGTGAAATTATCAAAATACCCTCAATTTGTAAAATTACCAAAATAC
1 CCCTGATCTACAAAATTA-CAAAATACCCTCAGTTTGTAAAATTACCAAAATAC
*
37701604 CCCTAATCTACAAAATTACAGAAATACCCT
1 CCCTGATCTACAAAATTACA-AAATACCCT
37701634 TGACTTTCTA
Statistics
Matches: 157, Mismatches: 26, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
53 37 0.24
54 119 0.76
55 1 0.01
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (53 bp):
CCCTGATCTACAAAATTACAAAATACCCTCAGTTTGTAAAATTACCAAAATAC
Found at i:37701813 original size:27 final size:27
Alignment explanation
Indices: 37701712--37701813 Score: 100
Period size: 27 Copynumber: 3.8 Consensus size: 27
37701702 TTACCAAAAC
* **
37701712 ACCCTTGTAGGGTGAAATGACTAAAAT
1 ACCCTTGTAGGGTAAAATGACTGTAAT
* *
37701739 ACCCTTATTA-GGTAAAAAGACTGTAA-
1 ACCCTT-GTAGGGTAAAATGACTGTAAT
* *
37701765 AGCCCTTGTAGGGTAAAGTGACCGTAAT
1 A-CCCTTGTAGGGTAAAATGACTGTAAT
*
37701793 ACCCTTGTATGGTAAAATGAC
1 ACCCTTGTAGGGTAAAATGAC
37701814 GAATATGCCC
Statistics
Matches: 60, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
26 3 0.05
27 54 0.90
28 3 0.05
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (27 bp):
ACCCTTGTAGGGTAAAATGACTGTAAT
Found at i:37701824 original size:27 final size:28
Alignment explanation
Indices: 37701713--37701825 Score: 85
Period size: 27 Copynumber: 4.2 Consensus size: 28
37701703 TACCAAAACA
* ***
37701713 CCCTTGTAGGGTGAAATGACTAAAATA-
1 CCCTTGTAGGGTAAAATGACCGTAATAG
* * *
37701740 CCCTTATTA-GGTAAAAAGACTGTAA-AG
1 CCCTT-GTAGGGTAAAATGACCGTAATAG
*
37701767 CCCTTGTAGGGTAAAGTGACCGTAATA-
1 CCCTTGTAGGGTAAAATGACCGTAATAG
*
37701794 CCCTTGTATGGTAAAATGA-CG-AATATG
1 CCCTTGTAGGGTAAAATGACCGTAATA-G
37701821 CCCTT
1 CCCTT
37701826 ATGTTCCGTA
Statistics
Matches: 69, Mismatches: 11, Indels: 12
0.75 0.12 0.13
Matches are distributed among these distances:
25 4 0.06
26 5 0.07
27 57 0.83
28 3 0.04
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (28 bp):
CCCTTGTAGGGTAAAATGACCGTAATAG
Found at i:37702694 original size:52 final size:51
Alignment explanation
Indices: 37702616--37702738 Score: 230
Period size: 52 Copynumber: 2.4 Consensus size: 51
37702606 GAGGAAGTGC
37702616 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
37702668 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
37702719 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
37702739 ATTAAAGAGG
Statistics
Matches: 71, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
50 10 0.14
51 25 0.35
52 36 0.51
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:37702713 original size:25 final size:26
Alignment explanation
Indices: 37702616--37702738 Score: 196
Period size: 26 Copynumber: 4.8 Consensus size: 26
37702606 GAGGAAGTGC
**
37702616 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
37702642 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
37702668 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
37702694 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
37702719 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
37702739 ATTAAAGAGG
Statistics
Matches: 91, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 33 0.36
26 58 0.64
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:37702942 original size:42 final size:42
Alignment explanation
Indices: 37702883--37702974 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
37702873 TAGTCTCCCC
* ** *
37702883 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
37702925 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
37702967 AAATGGGC
1 AAATGGGC
37702975 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:37703033 original size:31 final size:31
Alignment explanation
Indices: 37702998--37703138 Score: 210
Period size: 31 Copynumber: 4.5 Consensus size: 31
37702988 CGTTAACAGT
* *
37702998 AAAGGCTTTGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
37703029 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* * *
37703060 TAAGGCTTTGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* * *
37703091 TAAGGCTTCGACCCACTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
37703122 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
37703139 AACCGTTAAA
Statistics
Matches: 98, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 98 1.00
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.31
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:37705392 original size:32 final size:32
Alignment explanation
Indices: 37705356--37705416 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
37705346 ATTTGGGTCG
37705356 AGAATGGGCTTGAGGGCCATTAGTATTGTCCA
1 AGAATGGGCTTGAGGGCCATTAGTATTGTCCA
*
37705388 AGAATGGGCTTTAGGGCCATTAGTATTGT
1 AGAATGGGCTTGAGGGCCATTAGTATTGT
37705417 TATCCATGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.25, C:0.13, G:0.31, T:0.31
Consensus pattern (32 bp):
AGAATGGGCTTGAGGGCCATTAGTATTGTCCA
Found at i:37705514 original size:27 final size:27
Alignment explanation
Indices: 37705484--37705614 Score: 190
Period size: 27 Copynumber: 4.9 Consensus size: 27
37705474 ATTACCAAAG
** *
37705484 TACCCTCGATTTATTGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
37705511 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
37705538 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
37705565 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
37705592 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
37705615 AAAATACTCT
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.28, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:37705531 original size:54 final size:53
Alignment explanation
Indices: 37705457--37705586 Score: 136
Period size: 54 Copynumber: 2.4 Consensus size: 53
37705447 ATTATTGAAA
* *
37705457 TACCCTCGACTTGTA-AAATTACCAAAGTACCCTCGATTTATTGAATTACCGTTT
1 TACCCTCGA-TT-TACAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTT
***** *
37705511 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACA-AATTACCAAAGTACCCTCGATTTATAGAATTACCATTT
*
37705565 TACCCTTGATTTACAAAATTAC
1 TACCCTCGATTTAC-AAATTAC
37705587 TGTTTTACCC
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
52 2 0.03
53 3 0.05
54 58 0.91
55 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.38
Consensus pattern (53 bp):
TACCCTCGATTTACAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTT
Found at i:37705587 original size:54 final size:54
Alignment explanation
Indices: 37705484--37705640 Score: 206
Period size: 54 Copynumber: 2.9 Consensus size: 54
37705474 ATTACCAAAG
* ** * *
37705484 TACCCTCGATTTATTGAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAAAATTACTGTTT
37705538 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAAAATTACTGTTT
* * *** * *
37705592 TACCCTCGATTTACAAAATTACTAAAATACTCTTGGTTTACAAAATTAC
1 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAAAATTAC
37705641 CAAAATACCC
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 91 1.00
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAAAATTACTGTTT
Found at i:37705631 original size:27 final size:27
Alignment explanation
Indices: 37705592--37705923 Score: 224
Period size: 27 Copynumber: 12.3 Consensus size: 27
37705582 ATTACTGTTT
* * * *
37705592 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* *
37705619 TACTCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* *
37705646 TACCCTT-GATCAGTAAAATTACCAAAA
1 TACCCTTGGTTTA-TAAAATTACCAAAA
* * * *
37705673 TACCC-TAGTCTGTAAAATTACTAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* *
37705699 TACCCCTGGTTTGTAAAATTA-CAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
37705725 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
37705752 TACCAC-TGGTTTGTGAAATTACCGAAA
1 TACC-CTTGGTTTATAAAATTACCAAAA
** * *
37705779 TACCCTTAATTTGTAAAATTACCAAAG
1 TACCCTTGGTTTATAAAATTACCAAAA
* * * *
37705806 TACCCCTGATTTACAAAATTACAAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * * *
37705833 TACCATTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTTG-GTTTAT-AAAATTACCA-AAA
* * **
37705862 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
37705889 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
*
37705916 CACCCTTG
1 TACCCTTG
37705924 TAGGGTGAAA
Statistics
Matches: 246, Mismatches: 49, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
26 47 0.19
27 172 0.70
28 9 0.04
29 18 0.07
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTTGGTTTATAAAATTACCAAAA
Found at i:37705650 original size:54 final size:54
Alignment explanation
Indices: 37705538--37705921 Score: 199
Period size: 54 Copynumber: 7.1 Consensus size: 54
37705528 ATTACTGTTT
* *** * * *****
37705538 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTGCAAAATTACCAAAA
* * *
37705592 TACCCTCGATTTACAAAATTACTAAAATACTCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTGCAAAATTACCAAAA
* * * * * * *
37705646 TACCCTTGA-TCAGTAAAATTACCAAAATACCC-TAGTCTGTAAAATTACTAAAA
1 TACCCTCGATTTA-TAAAATTACTAAAATACCCTTGGTTTGCAAAATTACCAAAA
* * * * *
37705699 TACCC-CTGGTTTGTAAAATTAC-AAAATACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTATAAAATTACTAAAATACCCTTGGTTTGCAAAATTACCAAAA
* * * ** ** * *
37705752 TACCACT-GGTTTGTGAAATTACCGAAATACCCTTAATTTGTAAAATTACCAAAG
1 TACC-CTCGATTTATAAAATTACTAAAATACCCTTGGTTTGCAAAATTACCAAAA
* * * * *
37705806 TACCC-CTGATTTACAAAATTACAAAAATACCATTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTC-GATTTATAAAATTACTAAAATACCCTTG-GTTTGC--AAAATTACCA-AAA
* * * * * * * *
37705862 TACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTGCAAAATTACCAAAA
*
37705916 CACCCT
1 TACCCT
37705922 TGTAGGGTGA
Statistics
Matches: 256, Mismatches: 58, Indels: 32
0.74 0.17 0.09
Matches are distributed among these distances:
52 9 0.04
53 71 0.28
54 131 0.51
55 8 0.03
56 37 0.14
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTGCAAAATTACCAAAA
Found at i:37705650 original size:81 final size:81
Alignment explanation
Indices: 37705454--37705655 Score: 197
Period size: 81 Copynumber: 2.5 Consensus size: 81
37705444 CCAATTATTG
* ** * * ***
37705454 AAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATTGAATTACCGTTTTACCCTCG
1 AAATACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTACAAAATTACCGTTTTACCCTCG
* *
37705519 ATTTACAGAATTACTG
66 ATTTACAAAATTACTA
*** * * * *** *
37705535 TTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAAAATTACTGTTTTACCCTCG
1 AAATACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTACAAAATTACCGTTTTACCCTCG
37705600 ATTTACAAAATTACTA
66 ATTTACAAAATTACTA
* * *
37705616 AAATACTCTTGGTTTACAAAATTACCAAAATACCCTTGAT
1 AAATACCCTCGATTTACAAAATTACCAAAATACCCTTGAT
37705656 CAGTAAAATT
Statistics
Matches: 92, Mismatches: 29, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
81 92 1.00
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.37
Consensus pattern (81 bp):
AAATACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTACAAAATTACCGTTTTACCCTCG
ATTTACAAAATTACTA
Found at i:37705715 original size:53 final size:53
Alignment explanation
Indices: 37705606--37705836 Score: 248
Period size: 53 Copynumber: 4.3 Consensus size: 53
37705596 CTCGATTTAC
* * * ** * **
37705606 AAAATTACTAAAATACTCTTGGTTTACAAAATTACCAAAATACCCTTGATCAGT
1 AAAATTACCAAAATAC-CCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGT
* * *
37705660 AAAATTACCAAAATACCCTAGTCTGTAAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGT
* *
37705713 AAAATTA-CAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATA-CCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGT
* * * * **
37705766 GAAATTACCGAAATACCCTTAATTTGTAAAATTACCAAAGTACCCCTGATTTAC
1 AAAATTACCAAAATACCC-TAGTTTGTAAAATTACCAAAATACCCCTGATTTGT
*
37705820 AAAATTACAAAAATACC
1 AAAATTACCAAAATACC
37705837 ATTGACTTTC
Statistics
Matches: 149, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
52 7 0.05
53 78 0.52
54 64 0.43
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.29
Consensus pattern (53 bp):
AAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGT
Found at i:37705720 original size:80 final size:81
Alignment explanation
Indices: 37705606--37705837 Score: 256
Period size: 80 Copynumber: 2.9 Consensus size: 81
37705596 CTCGATTTAC
* ** *
37705606 AAAATTACTAAAATACTCTTGGTTTACAAAATTACCAAAATACCCTTGATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGATCAGTAAAATTACCAA
37705671 AATACC-CTAGTCTGT
66 AATACCACTAGTCTGT
* **
37705686 AAAATTACTAAAATACCCCTGGTTTGTAAAATTA-CAAAATACCCCT-AGTTTGTAAAATTACCA
1 AAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGA-TCAGTAAAATTACCA
* *
37705749 AAATACCACTGGTTTGT
65 AAATACCACTAGTCTGT
* ** ** * * * *
37705766 GAAATTACCGAAATACCCTTAATTTGTAAAATTACCAAAGTACCCCTGATTTA-CAAAATTACAA
1 AAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGA-TCAGTAAAATTACCA
37705830 AAATACCA
65 AAATACCA
37705838 TTGACTTTCT
Statistics
Matches: 128, Mismatches: 20, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
78 1 0.01
79 31 0.24
80 65 0.51
81 28 0.22
82 3 0.02
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (81 bp):
AAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGATCAGTAAAATTACCAA
AATACCACTAGTCTGT
Found at i:37706864 original size:25 final size:25
Alignment explanation
Indices: 37706826--37706915 Score: 105
Period size: 25 Copynumber: 3.6 Consensus size: 25
37706816 AGGAAGTGCT
*
37706826 AAAAGGGCTATGCCCCAGTATACCG
1 AAAAGGGCTTTGCCCCAGTATACCG
** *
37706851 AAAAGGGCTTTGCCTTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTATACCG
37706876 AAAAGGGCTTTGCCCCAGCTTATA---
1 AAAAGGGCTTTGCCCCAG--TATACCG
37706900 AAAAGGGCTTTGCCCC
1 AAAAGGGCTTTGCCCC
37706916 TGTAATTAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
24 16 0.29
25 37 0.66
27 3 0.05
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTATACCG
Found at i:37706925 original size:24 final size:24
Alignment explanation
Indices: 37706876--37706932 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
37706866 TAGTTTACCG
*
37706876 AAAAGGGCTTTGCCCCAGCTTATA
1 AAAAGGGCTTTGCCCCAGCTAATA
* *
37706900 AAAAGGGCTTTGCCCCTG-TAATT
1 AAAAGGGCTTTGCCCCAGCTAATA
37706923 AAAAGAGGCT
1 AAAAG-GGCT
37706933 AGGCCTCCAG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 8 0.28
24 21 0.72
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGCTAATA
Found at i:37707173 original size:31 final size:31
Alignment explanation
Indices: 37707138--37707247 Score: 202
Period size: 31 Copynumber: 3.5 Consensus size: 31
37707128 CGTTTACAGT
*
37707138 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
37707169 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
37707200 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
37707231 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
37707248 AACCGTTAAA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 76 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:37709990 original size:43 final size:42
Alignment explanation
Indices: 37709889--37710004 Score: 142
Period size: 43 Copynumber: 2.7 Consensus size: 42
37709879 GGTTTTTGAG
* * *
37709889 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGT
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGACATCGT
* ** *
37709931 ATTGAGATTATGTGTAAGACCATTTCTGGGACATTGACATCGAT
1 A-TGTGATTACATGTAAGACCATATCTGGGACATTGACATCG-T
*
37709975 ATGTGATAACATGTAAGACCATATCTGGGA
1 ATGTGATTACATGTAAGACCATATCTGGGA
37710005 AACGGCATTG
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
42 1 0.02
43 58 0.95
44 2 0.03
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (42 bp):
ATGTGATTACATGTAAGACCATATCTGGGACATTGACATCGT
Found at i:37723425 original size:79 final size:81
Alignment explanation
Indices: 37723323--37723507 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
37723313 GCTACTCATT
* * *
37723323 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
37723386 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
37723403 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
37723467 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
37723483 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37723508 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:37723507 original size:40 final size:40
Alignment explanation
Indices: 37723323--37723507 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
37723313 GCTACTCATT
* *
37723323 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
37723363 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
37723403 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
37723442 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
37723483 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37723508 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:37727943 original size:25 final size:25
Alignment explanation
Indices: 37727909--37727958 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
37727899 AACCAAAGTT
37727909 TGGTTTCTAGTATCATATATACTTA
1 TGGTTTCTAGTATCATATATACTTA
37727934 TGGTTTCTAGTATCATATATACTTA
1 TGGTTTCTAGTATCATATATACTTA
37727959 AACATAGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.48
Consensus pattern (25 bp):
TGGTTTCTAGTATCATATATACTTA
Found at i:37729711 original size:42 final size:42
Alignment explanation
Indices: 37729652--37729773 Score: 138
Period size: 43 Copynumber: 2.9 Consensus size: 42
37729642 TAAGGCTATT
** *
37729652 TGAGATTATGTGTAAGACTATATTTGGGATATGGCATCGATA
1 TGAGATTCCGTGTAAGACCATATTTGGGATATGGCATCGATA
* * * *
37729694 TGAGACTT-CGTGTAAGACCATAGTTGGGCTATTAGTATCGATA
1 TGAGA-TTCCGTGTAAGACCATATTTGGGATA-TGGCATCGATA
* *
37729737 TGAGATTCCATGTAAGACCATATCTGGGATATGGCAT
1 TGAGATTCCGTGTAAGACCATATTTGGGATATGGCAT
37729774 TGGTATGGTG
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
42 30 0.46
43 35 0.54
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (42 bp):
TGAGATTCCGTGTAAGACCATATTTGGGATATGGCATCGATA
Found at i:37732401 original size:20 final size:20
Alignment explanation
Indices: 37732376--37732414 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
37732366 ACCTGAATGC
37732376 TAGCATTATGGGAGGAGACG
1 TAGCATTATGGGAGGAGACG
*
37732396 TAGCATTGTGGGAGGAGAC
1 TAGCATTATGGGAGGAGAC
37732415 ATCTTGACGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.41, T:0.21
Consensus pattern (20 bp):
TAGCATTATGGGAGGAGACG
Found at i:37750188 original size:116 final size:116
Alignment explanation
Indices: 37749984--37750215 Score: 394
Period size: 116 Copynumber: 2.0 Consensus size: 116
37749974 AATAGTAGAG
37749984 GACCTATTCATGAAGAACGAAGGCTACAAATCGAAGAGCTAGATGAATGGCGGACGCATAAACCG
1 GACCTATTCATGAAGAACGAAGGCTACAAATCGAAGAGCTAGATGAATGGCGGACGCATAAACCG
* *
37750049 AGAATGCTCGATAAATAGAAACTACGATAGAACGAGCTCAATACCTTTCCA
66 AGAAGGCTCGATAAACAGAAACTACGATAGAACGAGCTCAATACCTTTCCA
* * *
37750100 GACCTATTCATGAAGAACGAAGGCTACAAATCGAGGAGCTAGATGAATGTCGGACGCATAAACTG
1 GACCTATTCATGAAGAACGAAGGCTACAAATCGAAGAGCTAGATGAATGGCGGACGCATAAACCG
*
37750165 AGAACGGC-CGATAAACAGAAACTATGATAGAACGAGCTCAATACCTTTCCA
66 AGAA-GGCTCGATAAACAGAAACTACGATAGAACGAGCTCAATACCTTTCCA
37750216 ATCAATATAA
Statistics
Matches: 109, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
116 107 0.98
117 2 0.02
ACGTcount: A:0.39, C:0.21, G:0.22, T:0.18
Consensus pattern (116 bp):
GACCTATTCATGAAGAACGAAGGCTACAAATCGAAGAGCTAGATGAATGGCGGACGCATAAACCG
AGAAGGCTCGATAAACAGAAACTACGATAGAACGAGCTCAATACCTTTCCA
Found at i:37763253 original size:40 final size:40
Alignment explanation
Indices: 37763209--37763443 Score: 389
Period size: 40 Copynumber: 5.9 Consensus size: 40
37763199 GAATACACAT
* *
37763209 CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
37763249 CACCAGTACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
* **
37763289 CACCAACACGTATGCTCTTCGGGACTTAGCCAAGATATAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
37763329 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
*
37763369 CACCAGCACGTATGCTCTTCGGGACTTAGCCTGGATATAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
37763409 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGA
37763444 CCATATAAAA
Statistics
Matches: 181, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 181 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:37763626 original size:43 final size:43
Alignment explanation
Indices: 37763563--37763648 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
37763553 TTTCAGTTCC
*
37763563 ATAGCCACATACAAAGATCACATTTATAGTCATAACACTCTTT
1 ATAGCCACATACAAAAATCACATTTATAGTCATAACACTCTTT
37763606 ATAGCCACATACAAAAATCACATTTATAGTCATAACACTCTTT
1 ATAGCCACATACAAAAATCACATTTATAGTCATAACACTCTTT
37763649 CAAAATTGCA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.41, C:0.23, G:0.06, T:0.30
Consensus pattern (43 bp):
ATAGCCACATACAAAAATCACATTTATAGTCATAACACTCTTT
Found at i:37765028 original size:46 final size:46
Alignment explanation
Indices: 37764975--37765111 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
37764965 TATATATACA
* * * * *
37764975 CATCTCATACATATCTCACATTAGCCATTTGGCATTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
37765021 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
*
37765067 CATCTCATACACATTTCGCATTAGCAATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
37765112 ATACACTTCC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:37765154 original size:22 final size:22
Alignment explanation
Indices: 37765128--37765199 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
37765118 TTCCACGTTC
37765128 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
37765150 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
37765174 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
37765197 ATC
1 ATC
37765200 TCATATATGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:37765156 original size:47 final size:47
Alignment explanation
Indices: 37765093--37765275 Score: 251
Period size: 47 Copynumber: 3.9 Consensus size: 47
37765083 CGCATTAGCA
* * * *
37765093 ATTCGGCTTTACCACATATATACACT-TCCACGTTCATCACATTGGCC
1 ATTCGGCCTTATCACATATATACA-TGTTCACATTCATCACATTGGCC
*
37765140 ATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCC
1 ATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCC
* * *
37765187 ATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTTGCC
1 ATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCC
* **
37765234 ATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 ATTCGGCCTTATCACATATATACATGTTCACATTCATCACAT
37765276 AAAATCCTAA
Statistics
Matches: 125, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
46 1 0.01
47 124 0.99
ACGTcount: A:0.26, C:0.29, G:0.10, T:0.35
Consensus pattern (47 bp):
ATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCC
Found at i:37771227 original size:23 final size:23
Alignment explanation
Indices: 37771201--37771259 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
37771191 AAGGCATACA
* *
37771201 AAAAGAAAAAAGTACAAA-AATAG
1 AAAAGAAAAAAGGA-AAAGAAAAG
37771224 AAAA-AAGAAAAGGAAAAGAAAAG
1 AAAAGAA-AAAAGGAAAAGAAAAG
*
37771247 AAAAGAACAAAGG
1 AAAAGAAAAAAGG
37771260 TCATAGTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
22 5 0.17
23 23 0.77
24 2 0.07
ACGTcount: A:0.75, C:0.03, G:0.19, T:0.03
Consensus pattern (23 bp):
AAAAGAAAAAAGGAAAAGAAAAG
Found at i:37771811 original size:9 final size:9
Alignment explanation
Indices: 37771797--37771826 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
37771787 ATCGTAATGG
37771797 AAATCAAAA
1 AAATCAAAA
37771806 AAATCAAAA
1 AAATCAAAA
37771815 AAATCAAAA
1 AAATCAAAA
37771824 AAA
1 AAA
37771827 AAAAAGAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.80, C:0.10, G:0.00, T:0.10
Consensus pattern (9 bp):
AAATCAAAA
Found at i:37773010 original size:64 final size:63
Alignment explanation
Indices: 37772935--37773060 Score: 198
Period size: 64 Copynumber: 2.0 Consensus size: 63
37772925 TCGTTCATAA
37772935 CACATCCAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
1 CACATCCAGTTAGGAGCATTTGATTCATTTCAATCATAGCA-CCTAATTATTTGACATAAGCAT
* * ** *
37772999 CACATCTAGTTAGGTGCATTTGATTCATTTTGATCATAGTACCTAATTATTTGACATAAGCA
1 CACATCCAGTTAGGAGCATTTGATTCATTTCAATCATAGCACCTAATTATTTGACATAAGCA
37773061 AGATACATGA
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
63 21 0.37
64 36 0.63
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (63 bp):
CACATCCAGTTAGGAGCATTTGATTCATTTCAATCATAGCACCTAATTATTTGACATAAGCAT
Found at i:37773634 original size:175 final size:177
Alignment explanation
Indices: 37773268--37774163 Score: 869
Period size: 175 Copynumber: 5.1 Consensus size: 177
37773258 GCAGTGGAGT
* * * * * * * *
37773268 AGACTGAAGATTGCAGGTCTTATTTCCCTAAGCAGTAGTGGAACAGACCAAAGATGACGAATCTT
1 AGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTT
* * * * * * * * *
37773333 ATCTCCATGTA-CTGGCAATGGAGTAGATTTAAGTCACCAGCTTTATCTCCCTGAAGTTGC-AGT
66 ATCTCCATGTATCAGACAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAG-
* * * ** ** * * *
37773396 GGAGCAGGCT-CAGTATACAAGTCTTATC-TCTTTGAGGTTGC-AGTGGAGC
130 AGAGCAGGTTGAAG-A-ATGAGTCTTATCTTC-CCGAAGTAGCAAG-GAAGC
* *
37773445 AGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGATGGCGAATCTT
1 AGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTT
* * *
37773510 ATCTTCATGTATC-GGC-ATGGAGCAGATTTTAGCCA-CTGACC-TATCTCTCT-ATGGTAGCAA
66 ATCTCCATGTATCAGACAATGGAGCAGATTTTAGCCACCAG-CCTTATCTCTCTGA-GGTAGCAA
*** *
37773570 GAGAGCAGGTTGGCTATTGTAGTCTTATCTTCCCGAAGTAGCAAGGAAGC
129 GAGAGCAGGTTGAAGAATG-AGTCTTATCTTCCCGAAGTAGCAAGGAAGC
* ** * * *
37773620 AGATTGAAGATTGAAGATCTTATCTCCCTGAAGTTGCAGTAGG-GCAGATCGAAGCTGGTAAATC
1 AGACTGAAGATTGAAGATCTTATCTCCCT-AAGCAGTAGT-GGAGCAGATCGAAGATGGCAAATC
* *
37773684 TTATCTCCATGTATCAGA-AATAGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAA
64 TTATCTCCATGTATCAGACAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAA
* * * *
37773748 GAGAGTAGGTTAAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGC
129 GAGAGCAGGTTGAAGAATGAGTCTTATCTTCCCGAAGTAGCAAGGAAGC
* * * * **
37773797 AGACTGAAGATTGAATG-TCTTATCTCCCTAAACAGTAGTGGAACAGACCAAAGACT-ATAAATC
1 AGACTGAAGATTGAA-GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGGCAAATC
* * * * *
37773860 TTATCTCCATATAT-TGACAATGAAGTATATTTTA-CCACCAGCCTTATCTCTCTGAGGTAGCAA
64 TTATCTCCATGTATCAGACAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAA
* * * *
37773923 GAGAGCAGGTTGAAGAATGATTCTTATCTT-TCTAAGGTATCAAGGAAGC
129 GAGAGCAGGTTGAAGAATGAGTCTTATCTTCCCGAA-GTAGCAAGGAAGC
* * *
37773972 AGACTGGAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCGAAGATGGCGAATCTT
1 AGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTT
* *
37774037 ATCTCCATGTA-CA-AGCAATGGAGCAGATTTTAGCCACTAGCCTTCTCTCTCTGAGGTAGCAAG
66 ATCTCCATGTATCAGA-CAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAG
*
37774100 AGAGCAGGTTGAAG-ATGGTAGTCTTATCTTCCTGAAGTAGCAAGGAAGC
130 AGAGCAGGTTGAAGAAT-G-AGTCTTATCTTCCCGAAGTAGCAAGGAAGC
* *
37774149 AAATTGAAGATTGAA
1 AGACTGAAGATTGAA
37774164 TATTGGAAGA
Statistics
Matches: 591, Mismatches: 100, Indels: 56
0.79 0.13 0.07
Matches are distributed among these distances:
174 5 0.01
175 220 0.37
176 148 0.25
177 181 0.31
178 36 0.06
179 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (177 bp):
AGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTT
ATCTCCATGTATCAGACAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGA
GAGCAGGTTGAAGAATGAGTCTTATCTTCCCGAAGTAGCAAGGAAGC
Found at i:37773950 original size:352 final size:352
Alignment explanation
Indices: 37773268--37774164 Score: 910
Period size: 352 Copynumber: 2.5 Consensus size: 352
37773258 GCAGTGGAGT
* * * * * * * *
37773268 AGACTGAAGATTGCAGGTCTTATTTCCCTAAGCAGTAGTGGAACAGACCAAAGATGACGAATCTT
1 AGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGT-GAGCAGATCGAAGATGGCAAATCTT
** * * * * * * * * *
37773333 ATCTCCATGTACTGGCAATGGAGTAGATTTAAGTCACCAGCTTTATCTCCCTGAAGTTGC-AGTG
65 ATCTCCATGTACAAGAAATAGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAG-A
* * *** * * * *
37773397 GAGCAGGCT-CAGTATACAAGTCTTATC-TCTTTGAGGTTGC-AGTGGAGCAGACTGAAGATTGA
129 GAGCAGGTTAAAG-ATGGTAGTCTTATCTTC-CTGAAGTAGCAAG-GAAGCAGACTGAAGATTGA
* * * * * * * *
37773459 A-GATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGATGGCGAATCTTATCTTCATGTATC
191 ATGATCTTATCTCCCTAAACAGTAGCGGAACAGACCAAAGATGACAAATCTTATCTCCATATATC
* * * *** *
37773523 GGCATGGAGCAGATTTTAGCCACTGACCTATCTCTCTATGGTAGCAAGAGAGCAGGTTGGCTATT
256 GACATGAAGCAGATTTTAGCCACAGACCTATCTCTCTATGGTAGCAAGAGAGCAGGTTGAAGAAT
37773588 GTAGTCTTATCTTCCCGAA-GTAGCAAGGAAGC
321 GTAGTCTTATCTT-CCGAAGGTAGCAAGGAAGC
* * *
37773620 AGATTGAAGATTGAAGATCTTATCTCCCTGAAGTTGCAGTAG-G-GCAGATCGAAGCTGGTAAAT
1 AGACTGAAGATTGAAGATCTTATCTCCCT-AA---GCAGTAGTGAGCAGATCGAAGATGGCAAAT
37773683 CTTATCTCCATGTATC-AGAAATAGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCA
62 CTTATCTCCATGTA-CAAGAAATAGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCA
* *
37773747 AGAGAGTAGGTTAAAGAAT-G-AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTG
126 AGAGAGCAGGTTAAAG-ATGGTAGTCTTATCTTCCTGAAGTAGCAAGGAAGCAGACTGAAGATTG
* *
37773810 AATG-TCTTATCTCCCTAAACAGTAGTGGAACAGACCAAAGACT-ATAAATCTTATCTCCATATA
190 AATGATCTTATCTCCCTAAACAGTAGCGGAACAGACCAAAGA-TGACAAATCTTATCTCCATATA
* * *
37773873 TTGACAATGAAGTATATTTTA-CCACCAG-CCTTATCTCTCTGA-GGTAGCAAGAGAGCAGGTTG
254 TCGAC-ATGAAGCAGATTTTAGCCA-CAGACC-TATCTCTCT-ATGGTAGCAAGAGAGCAGGTTG
* * * *
37773935 AAGAATG-ATTCTTATCTTTCTAAGGTATCAAGGAAGC
315 AAGAATGTAGTCTTATCTTCCGAAGGTAGCAAGGAAGC
* *
37773972 AGACTGGAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCGAAGATGGCGAATCTT
1 AGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTG-AGCAGATCGAAGATGGCAAATCTT
* * * * *
37774037 ATCTCCATGTACAAGCAATGGAGCAGATTTTAGCCACTAGCCTTCTCTCTCTGAGGTAGCAAGAG
65 ATCTCCATGTACAAGAAATAGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAG
* * *
37774102 AGCAGGTTGAAGATGGTAGTCTTATCTTCCTGAAGTAGCAAGGAAGCAAATTGAAGATTGAAT
130 AGCAGGTTAAAGATGGTAGTCTTATCTTCCTGAAGTAGCAAGGAAGCAGACTGAAGATTGAAT
37774165 ATTGGAAGAG
Statistics
Matches: 455, Mismatches: 68, Indels: 44
0.80 0.12 0.08
Matches are distributed among these distances:
348 7 0.02
349 1 0.00
350 3 0.01
351 94 0.21
352 208 0.46
353 126 0.28
354 9 0.02
356 7 0.02
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (352 bp):
AGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGAGCAGATCGAAGATGGCAAATCTTA
TCTCCATGTACAAGAAATAGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGA
GCAGGTTAAAGATGGTAGTCTTATCTTCCTGAAGTAGCAAGGAAGCAGACTGAAGATTGAATGAT
CTTATCTCCCTAAACAGTAGCGGAACAGACCAAAGATGACAAATCTTATCTCCATATATCGACAT
GAAGCAGATTTTAGCCACAGACCTATCTCTCTATGGTAGCAAGAGAGCAGGTTGAAGAATGTAGT
CTTATCTTCCGAAGGTAGCAAGGAAGC
Found at i:37774487 original size:176 final size:175
Alignment explanation
Indices: 37774169--37774574 Score: 457
Period size: 175 Copynumber: 2.3 Consensus size: 175
37774159 TTGAATATTG
* * * *
37774169 GAAGAGGCAAATCTTATCTCTATGTATCGACATTGGAGCAGATTTAAGCCTCAAGTCTTATCTCT
1 GAAGAGGCAAAACTTATCTCCATGTATCGACATTGGAGCAGATTTAAGCCACAAGCCTTATCTCT
*
37774234 CTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTTCTGAGCTAGCAAGAAAGCAGAC
66 CTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGCTAGCAAGAAAGCAGAC
37774299 TGAAAGTTGAAGATCTTATCTCTCTAAGTAGTAGTAGAGCAGATC
131 TGAAAGTTGAAGATCTTATCTCTCTAAGTAGTAGTAGAGCAGATC
* *
37774344 GAAGATGGCAAAACTTATCTCCATGTA-CAGTA-A-TGGAGCAGATTTTAGCCACTAGCCTTATC
1 GAAGA-GGCAAAACTTATCTCCATGTATC-G-ACATTGGAGCAGATTTAAGCCACAAGCCTTATC
* *
37774406 TCTCTGAGGTAGCAAGAGAGCAGGTT-AGCGATTTTAGTCTTATCTTCCTGAGGC-AGCAAGAAA
63 TCTCTGAGGTAGCAAGAGAGCAGGTTGA-AGA-TTGAGTCTTATCTTCCTGA-GCTAGCAAGAAA
* * * *
37774469 GCAGACTGAAGATTGAAGATTGAAGATC-TATTTCCCTAAGTAGTTGTGGAGCAGATC
125 GCAGACT---GA---AAG-TTGAAGATCTTATCTCTCTAAGTAGTAGTAGAGCAGATC
* * * * * *
37774526 -AAGGATGACGAATCTTATCCCCATGTATCGACAATGGAGAAGATTTAAG
1 GAA-GA-GGCAAAACTTATCTCCATGTATCGACATTGGAGCAGATTTAAG
37774575 TCACCAGTCC
Statistics
Matches: 195, Mismatches: 19, Indels: 26
0.81 0.08 0.11
Matches are distributed among these distances:
174 1 0.01
175 59 0.30
176 54 0.28
177 3 0.02
179 2 0.01
181 3 0.02
182 50 0.26
183 23 0.12
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.28
Consensus pattern (175 bp):
GAAGAGGCAAAACTTATCTCCATGTATCGACATTGGAGCAGATTTAAGCCACAAGCCTTATCTCT
CTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGCTAGCAAGAAAGCAGAC
TGAAAGTTGAAGATCTTATCTCTCTAAGTAGTAGTAGAGCAGATC
Found at i:37778740 original size:62 final size:62
Alignment explanation
Indices: 37778663--37778785 Score: 219
Period size: 62 Copynumber: 2.0 Consensus size: 62
37778653 GGGACACCAT
* * *
37778663 CGCATGCTATCATCCACCGATTGTAATGGTAGAATGGTGGTGATTGAACGGCGGGTCAGATC
1 CGCATGCAATCATCCACCGATTGTAAAGGTAGAATGGTGGTGATTGAACGGCGGATCAGATC
37778725 CGCATGCAATCATCCACCGATTGTAAAGGTAGAATGGTGGTGATTGAACGGCGGATCAGAT
1 CGCATGCAATCATCCACCGATTGTAAAGGTAGAATGGTGGTGATTGAACGGCGGATCAGAT
37778786 AGGGGCAAAC
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (62 bp):
CGCATGCAATCATCCACCGATTGTAAAGGTAGAATGGTGGTGATTGAACGGCGGATCAGATC
Found at i:37782979 original size:16 final size:15
Alignment explanation
Indices: 37782958--37783023 Score: 59
Period size: 16 Copynumber: 4.5 Consensus size: 15
37782948 CATCTCATAA
37782958 TCATTTCTCATATTT
1 TCATTTCTCATATTT
*
37782973 GTCATTT-TAATATTT
1 -TCATTTCTCATATTT
*
37782988 TC-TCATCTCATA--T
1 TCAT-TTCTCATATTT
37783001 TCATTTCTCATATTTT
1 TCATTTCTCATA-TTT
37783017 TCATTTC
1 TCATTTC
37783024 AATATCAATC
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
13 11 0.28
14 4 0.10
15 11 0.28
16 14 0.35
ACGTcount: A:0.21, C:0.20, G:0.02, T:0.58
Consensus pattern (15 bp):
TCATTTCTCATATTT
Found at i:37783005 original size:43 final size:43
Alignment explanation
Indices: 37782943--37783028 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
37782933 TCATATTTCA
*
37782943 TTTCTCATCTCATAATCATTTCTCATATTTGTCATTTTAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTGTCATTTCAATAT
* *
37782986 TTTCTCATCTCATATTCATTTCTCATATTTTTCATTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTGTCATTTCAATAT
37783029 CAATCACATA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.24, C:0.20, G:0.01, T:0.55
Consensus pattern (43 bp):
TTTCTCATCTCATAATCATTTCTCATATTTGTCATTTCAATAT
Found at i:37785959 original size:15 final size:15
Alignment explanation
Indices: 37785941--37785992 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 15
37785931 TGAAAAATCA
37785941 ATAAATTAAAAATAT
1 ATAAATTAAAAATAT
*
37785956 ATAAAATTATTAAATAT
1 AT-AAATTA-AAAATAT
37785973 -TAAATT-AAAATAAT
1 ATAAATTAAAAAT-AT
37785987 ATAAAT
1 ATAAAT
37785993 ATTTTTTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
13 4 0.13
14 2 0.06
15 12 0.39
16 7 0.23
17 6 0.19
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
ATAAATTAAAAATAT
Found at i:37785962 original size:16 final size:16
Alignment explanation
Indices: 37785943--37785991 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
37785933 AAAAATCAAT
37785943 AAATTAAAAATATATA
1 AAATTAAAAATATATA
*
37785959 AAATTATTAAATAT-T-
1 AAATTA-AAAATATATA
37785974 AAATT-AAAATAATATA
1 AAATTAAAAAT-ATATA
37785990 AA
1 AA
37785992 TATTTTTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
13 4 0.15
14 2 0.07
15 6 0.22
16 9 0.33
17 6 0.22
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AAATTAAAAATATATA
Found at i:37787796 original size:21 final size:19
Alignment explanation
Indices: 37787730--37787801 Score: 65
Period size: 19 Copynumber: 3.6 Consensus size: 19
37787720 ATATGTTTGT
* *
37787730 TAATATTATAAAATTAAGC
1 TAATGTTATAAAATTAAAC
* *
37787749 TAATGTAATAAAA-TAAAA
1 TAATGTTATAAAATTAAAC
37787767 TAAAGTGTTTATAAAATTAAAC
1 T-AA-TG-TTATAAAATTAAAC
37787789 TATATGTTATAAA
1 TA-ATGTTATAAA
37787802 TTTGTAATTA
Statistics
Matches: 42, Mismatches: 6, Indels: 9
0.74 0.11 0.16
Matches are distributed among these distances:
18 4 0.10
19 13 0.31
20 9 0.21
21 10 0.24
22 6 0.14
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.36
Consensus pattern (19 bp):
TAATGTTATAAAATTAAAC
Found at i:37788176 original size:13 final size:13
Alignment explanation
Indices: 37788158--37788189 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
37788148 AAGATTTCAA
37788158 GATAAAGTTCTTT
1 GATAAAGTTCTTT
37788171 GATAAAGTTCTTT
1 GATAAAGTTCTTT
37788184 GATAAA
1 GATAAA
37788190 CCATCACTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.38, C:0.06, G:0.16, T:0.41
Consensus pattern (13 bp):
GATAAAGTTCTTT
Found at i:37788564 original size:8 final size:9
Alignment explanation
Indices: 37788541--37788580 Score: 50
Period size: 8 Copynumber: 4.7 Consensus size: 9
37788531 ACCAGTCCGG
37788541 TTAAAAATTA
1 TTAAAAA-TA
37788551 TTAAAAAT-
1 TTAAAAATA
37788559 TTAAAAA-A
1 TTAAAAATA
37788567 -TAAAAATA
1 TTAAAAATA
37788575 TTAAAA
1 TTAAAA
37788581 TTAAAAACAA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
7 6 0.22
8 8 0.30
9 6 0.22
10 7 0.26
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
TTAAAAATA
Found at i:37788576 original size:24 final size:23
Alignment explanation
Indices: 37788542--37788587 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
37788532 CCAGTCCGGT
37788542 TAAAAATTATTAAAAATTTAAAAAA
1 TAAAAATTATT-AAAA-TTAAAAAA
37788567 TAAAAA-TATTAAAATTAAAAA
1 TAAAAATTATTAAAATTAAAAA
37788588 CAAAAACTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 7 0.33
23 4 0.19
24 4 0.19
25 6 0.29
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (23 bp):
TAAAAATTATTAAAATTAAAAAA
Found at i:37788585 original size:15 final size:15
Alignment explanation
Indices: 37788550--37788587 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
37788540 GTTAAAAATT
37788550 ATTAAAAATTTAAAA
1 ATTAAAAATTTAAAA
*
37788565 AATAAAAATATT-AAA
1 ATTAAAAAT-TTAAAA
37788580 ATTAAAAA
1 ATTAAAAA
37788588 CAAAAACTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 18 0.90
16 2 0.10
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
ATTAAAAATTTAAAA
Found at i:37795821 original size:21 final size:21
Alignment explanation
Indices: 37795792--37795846 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
37795782 TGTCAACTCA
* *
37795792 TATGAGTTTTTGTTTAACCCT
1 TATGAGTTTCTGTTTAACACT
* *
37795813 TATGGGTTTCTGTTTAGCACT
1 TATGAGTTTCTGTTTAACACT
* *
37795834 TATGTGCTTCTGT
1 TATGAGTTTCTGT
37795847 GCAGCCTACA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.15, C:0.15, G:0.20, T:0.51
Consensus pattern (21 bp):
TATGAGTTTCTGTTTAACACT
Found at i:37797636 original size:46 final size:47
Alignment explanation
Indices: 37797571--37797684 Score: 140
Period size: 47 Copynumber: 2.4 Consensus size: 47
37797561 TTATCAATGT
* * * * *
37797571 CATAGCCCAGCTATGGTCTTACAC-GAATCACATATCTCAATGATGC
1 CATATCCCAGATATGGTCTTACACAGAAGCACATATCACAACGATGC
* * * *
37797617 CATATCCCAGATATGGTCTTATACAGTAGCATATATCACACCGATGC
1 CATATCCCAGATATGGTCTTACACAGAAGCACATATCACAACGATGC
37797664 CATATCCCAGATATGGTCTTA
1 CATATCCCAGATATGGTCTTA
37797685 TACGGAAATC
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
46 21 0.36
47 37 0.64
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (47 bp):
CATATCCCAGATATGGTCTTACACAGAAGCACATATCACAACGATGC
Found at i:37797892 original size:30 final size:30
Alignment explanation
Indices: 37797706--37798665 Score: 1742
Period size: 30 Copynumber: 31.8 Consensus size: 30
37797696 CTTGTCACTT
* *
37797706 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAACTACCACTTTTCACT-ATCAG
* * * *
37797737 GTAGCTGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAACTACCACTTTTCACT-ATCAG
* * * *
37797768 GTAGTCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAACTACCACTTTTCACT-ATCAG
* *
37797799 GTAGCAGAAGCTACCACTTTTCACTAATCAG
1 GTAGCCGAAACTACCACTTTTCACT-ATCAG
*
37797830 GTAG-CAAAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAA-CTACCACTTTTCACT-ATCAG
37797861 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37797891 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37797921 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37797951 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37797981 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37798011 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37798041 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37798071 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37798101 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37798131 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37798161 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37798191 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37798221 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37798251 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37798281 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37798311 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37798341 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37798371 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37798401 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37798431 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37798461 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37798491 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37798521 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37798551 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37798581 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37798611 GTAGCCGAAACTACCACTTTTCACTATCAG
1 GTAGCCGAAACTACCACTTTTCACTATCAG
37798641 GTAGCCGAAACTACCACTTTTCACT
1 GTAGCCGAAACTACCACTTTTCACT
37798666 TGTCATTTAT
Statistics
Matches: 911, Mismatches: 16, Indels: 5
0.98 0.02 0.01
Matches are distributed among these distances:
30 782 0.86
31 125 0.14
32 4 0.00
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (30 bp):
GTAGCCGAAACTACCACTTTTCACTATCAG
Found at i:37804140 original size:24 final size:23
Alignment explanation
Indices: 37804107--37804161 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 23
37804097 TTACTTAGTG
*
37804107 ATTTAATATAAAT-ATATAATTATT
1 ATTTATTATAAATAAT-TAA-TATT
*
37804131 ATTTATTATATATAATTAATATT
1 ATTTATTATAAATAATTAATATT
37804154 ATTT-TTAT
1 ATTTATTAT
37804162 GACATAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 4 0.14
23 8 0.29
24 14 0.50
25 2 0.07
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (23 bp):
ATTTATTATAAATAATTAATATT
Found at i:37807900 original size:25 final size:25
Alignment explanation
Indices: 37807866--37807916 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
37807856 TTCCTTATAA
**
37807866 ACTTTAAATTAAGAATTCTATTAGG
1 ACTTTAAATTAAGAATTAGATTAGG
*
37807891 ACTTTAAATTAGGAATTAGATTAGG
1 ACTTTAAATTAAGAATTAGATTAGG
37807916 A
1 A
37807917 TTTTCCTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.37
Consensus pattern (25 bp):
ACTTTAAATTAAGAATTAGATTAGG
Found at i:37814478 original size:67 final size:65
Alignment explanation
Indices: 37814367--37814498 Score: 183
Period size: 67 Copynumber: 2.0 Consensus size: 65
37814357 CAAAAGTCCT
* *
37814367 CCAAAATACATGAAAAAAAGTTCGGGTAATTGAATATATTTAGTCGGACACGTATCTGTGAATGC
1 CCAAAATACATGAAAAAAAGTTCGAGTAATTGAATATATTTAGTCAGACACGTATCTGTGAATGC
* * * * *
37814432 CCAAGATACATGAAAAAAAGTTCCCGAGTGATTGAATGTATTTAGTCAGACATGTATCTTTGAAT
1 CCAAAATACATGAAAAAAAGTT--CGAGTAATTGAATATATTTAGTCAGACACGTATCTGTGAAT
37814497 GC
64 GC
37814499 TCTAGTTCGA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
65 21 0.36
67 37 0.64
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (65 bp):
CCAAAATACATGAAAAAAAGTTCGAGTAATTGAATATATTTAGTCAGACACGTATCTGTGAATGC
Found at i:37815737 original size:91 final size:91
Alignment explanation
Indices: 37815563--37815838 Score: 349
Period size: 91 Copynumber: 3.0 Consensus size: 91
37815553 ATAAGGTCAC
* * * * * * *
37815563 ATTTTGTAATTGTATTTTTATAAAATGTCTAATGTAGTATC-TGTACTTTGAAAATGTCTAATAT
1 ATTTGGTACTTGTATTTTCATAAAATGTCTAATGTGGT-TCTTATACTTTGAAAATATCTAATGT
* *
37815627 GATACTTAAACTATCAATTTATGTATT
65 GGTACTTAAACTATCAATTTGTGTATT
*
37815654 ATTTGGTACTTGT-TCTTTCATAAAATGTCTAATGTGGTTCTTATACTTTAAAAATATCTAATGT
1 ATTTGGTACTTGTAT-TTTCATAAAATGTCTAATGTGGTTCTTATACTTTGAAAATATCTAATGT
37815718 GGTACTTAAACTATCAATTTGTGTATT
65 GGTACTTAAACTATCAATTTGTGTATT
* * * * * * *
37815745 ATATGTTACTTGTATTTTTATAAAATATCCAATGTGGTACTTATACTTTGAAAATATTTAATGTG
1 ATTTGGTACTTGTATTTTCATAAAATGTCTAATGTGGTTCTTATACTTTGAAAATATCTAATGTG
* *
37815810 GTATTTAAATTATCAATTTGTGTATT
66 GTACTTAAACTATCAATTTGTGTATT
37815836 ATT
1 ATT
37815839 ATTATACGAG
Statistics
Matches: 161, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
90 3 0.02
91 157 0.98
92 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.12, T:0.47
Consensus pattern (91 bp):
ATTTGGTACTTGTATTTTCATAAAATGTCTAATGTGGTTCTTATACTTTGAAAATATCTAATGTG
GTACTTAAACTATCAATTTGTGTATT
Done.