Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56482370
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1659275 characters in sequence are not A, C, G, or T
File 113 of 172
Found at i:37823530 original size:28 final size:28
Alignment explanation
Indices: 37823490--37823546 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
37823480 CGTTTTTAAA
37823490 GATATTCAATAGAGATATGATCCTCAAG
1 GATATTCAATAGAGATATGATCCTCAAG
37823518 GATATTCAATAGAGATATGATCCTCAAG
1 GATATTCAATAGAGATATGATCCTCAAG
37823546 G
1 G
37823547 GAAAAACATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (28 bp):
GATATTCAATAGAGATATGATCCTCAAG
Found at i:37826736 original size:22 final size:21
Alignment explanation
Indices: 37826710--37826765 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 21
37826700 GTTATTTTCC
37826710 ATATTATGTATTAAATTAACAT
1 ATATTAT-TATTAAATTAACAT
** *
37826732 ATATTATTATTACTTTAACTT
1 ATATTATTATTAAATTAACAT
37826753 ATTATTATTATTA
1 A-TATTATTATTA
37826766 TTTTGTTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
21 12 0.40
22 18 0.60
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (21 bp):
ATATTATTATTAAATTAACAT
Found at i:37826774 original size:25 final size:23
Alignment explanation
Indices: 37826733--37826791 Score: 57
Period size: 23 Copynumber: 2.5 Consensus size: 23
37826723 AATTAACATA
*
37826733 TATTATTATTACTTTAACTTATTAT
1 TATTATTATTACTTTAA--TATTAC
*
37826758 TATTATTATT-TTGTTAATATTAC
1 TATTATTATTACT-TTAATATTAC
*
37826781 TATTATAATTA
1 TATTATTATTA
37826792 TATTTTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
23 14 0.48
24 1 0.03
25 14 0.48
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (23 bp):
TATTATTATTACTTTAATATTAC
Found at i:37827163 original size:143 final size:146
Alignment explanation
Indices: 37826885--37827169 Score: 340
Period size: 149 Copynumber: 2.0 Consensus size: 146
37826875 AATGTGTTAG
* * * *
37826885 TATTAGTATTATATATTAGTGTATTTTTTATTATATATGTATATGTATATATTTTTATACATAGT
1 TATTAGTATTATATATTAGTGTATTTTTTATTAAATATGCATATATATATATATTTATA-ATAGT
* * *
37826950 ATTATTTTTTTATTATTACTTTATTTTAATATTTTTATTATACTACATTTGCTTTTTGTATTTTA
65 A-TATATTTTTA-TATTACCTTATTTTAATATTTTTATTATACTACATTTGCCTTTTGTATTTTA
37827015 ATATTATTACTATTATCAT
128 ATATTATTACTATTATCAT
* * *
37827034 TATTATTATTA-ATATTAGTGTATATTTTTATTAAATATGCATATATATATGTATTTAT-ATCGT
1 TATTAGTATTATATATTAGTGTAT-TTTTTATTAAATATGCATATATATATATATTTATAATAGT
37827097 A-ATATTTTTA-ATTACCTTATTTTAATATTATTATATTATAC-AC-TTT-CCTTTT-TATGTTT
65 ATATATTTTTATATTACCTTATTTTAATATT-TT-TATTATACTACATTTGCCTTTTGTAT-TTT
37827156 -AT-TTATTACT-TTAT
127 AATATTATTACTATTAT
37827170 TACTAATTAA
Statistics
Matches: 122, Mismatches: 10, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
139 4 0.03
140 8 0.07
141 5 0.04
142 8 0.07
143 21 0.17
144 4 0.03
145 16 0.13
147 5 0.04
148 12 0.10
149 39 0.32
ACGTcount: A:0.31, C:0.06, G:0.05, T:0.59
Consensus pattern (146 bp):
TATTAGTATTATATATTAGTGTATTTTTTATTAAATATGCATATATATATATATTTATAATAGTA
TATATTTTTATATTACCTTATTTTAATATTTTTATTATACTACATTTGCCTTTTGTATTTTAATA
TTATTACTATTATCAT
Found at i:37827257 original size:9 final size:9
Alignment explanation
Indices: 37827244--37827407 Score: 72
Period size: 9 Copynumber: 18.3 Consensus size: 9
37827234 TAATACAATA
*
37827244 TATTATTAA
1 TATTATTAT
37827253 TATTACTT-T
1 TATTA-TTAT
*
37827262 TATTTTTAT
1 TATTATTAT
37827271 TATTATTAT
1 TATTATTAT
*
37827280 TATTATTAC
1 TATTATTAT
*
37827289 TATTATTCTT
1 TATTATT-AT
* *
37827299 TATTGTCAT
1 TATTATTAT
**
37827308 GGTTATTAT
1 TATTATTAT
*
37827317 GT-TTATTTT
1 -TATTATTAT
*
37827326 TA-TAGCTAT
1 TATTA-TTAT
37827335 TATT-TT-T
1 TATTATTAT
* * *
37827342 TATCACTAA
1 TATTATTAT
*
37827351 TATTACTAT
1 TATTATTAT
*
37827360 TGTTA-TATT
1 TATTATTA-T
37827369 TATTATTAT
1 TATTATTAT
37827378 TACTT-TTAT
1 TA-TTATTAT
* *
37827387 TATAATTAC
1 TATTATTAT
37827396 TATTATTAT
1 TATTATTAT
37827405 TAT
1 TAT
37827408 AGCTTTTCTT
Statistics
Matches: 113, Mismatches: 29, Indels: 26
0.67 0.17 0.15
Matches are distributed among these distances:
7 4 0.04
8 10 0.09
9 87 0.77
10 12 0.11
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.62
Consensus pattern (9 bp):
TATTATTAT
Found at i:37827268 original size:6 final size:6
Alignment explanation
Indices: 37827244--37827407 Score: 72
Period size: 6 Copynumber: 27.5 Consensus size: 6
37827234 TAATACAATA
* * *
37827244 TATTAT TAATAT TACTT-T TATTTT TATTAT TATTAT TATTAT TACTAT
1 TATTAT TATTAT TA-TTAT TATTAT TATTAT TATTAT TATTAT TATTAT
* * * ** * *
37827292 TATTCTT TATTGT CATGGT TATTAT GT-TTAT TTTTA- TAGCTAT TATT-T
1 TATT-AT TATTAT TATTAT TATTAT -TATTAT TATTAT TA-TTAT TATTAT
* * * * *
37827340 T-TTAT CACTAA TATTAC TATTGT TA-TATT TATTAT TATTACT T-TTAT
1 TATTAT TATTAT TATTAT TATTAT TATTA-T TATTAT TATTA-T TATTAT
* *
37827387 TATAAT TACTAT TATTAT TAT
1 TATTAT TATTAT TATTAT TAT
37827408 AGCTTTTCTT
Statistics
Matches: 117, Mismatches: 28, Indels: 26
0.68 0.16 0.15
Matches are distributed among these distances:
4 2 0.02
5 10 0.09
6 92 0.79
7 13 0.11
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.62
Consensus pattern (6 bp):
TATTAT
Found at i:37827385 original size:15 final size:15
Alignment explanation
Indices: 37827367--37827407 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
37827357 TATTGTTATA
37827367 TTTATTATTATTACT
1 TTTATTATTATTACT
*
37827382 TTTATTATAATTACT
1 TTTATTATTATTACT
*
37827397 ATTATTATTAT
1 TTTATTATTAT
37827408 AGCTTTTCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTATTATTATTACT
Found at i:37830307 original size:11 final size:11
Alignment explanation
Indices: 37830293--37830372 Score: 54
Period size: 11 Copynumber: 7.4 Consensus size: 11
37830283 ATATCAAAAC
*
37830293 AATAACAACAA
1 AATAATAACAA
*
37830304 AATAGTAACAA
1 AATAATAACAA
*
37830315 TATAATAAC-A
1 AATAATAACAA
* *
37830325 AATAGTAGCAA
1 AATAATAACAA
* *
37830336 AATAAAAATAA
1 AATAATAACAA
* * *
37830347 AATAGTAGCGA
1 AATAATAACAA
*
37830358 AACAATAACAA
1 AATAATAACAA
37830369 AATA
1 AATA
37830373 GCTGATTCGG
Statistics
Matches: 47, Mismatches: 21, Indels: 2
0.67 0.30 0.03
Matches are distributed among these distances:
10 7 0.15
11 40 0.85
ACGTcount: A:0.65, C:0.10, G:0.07, T:0.17
Consensus pattern (11 bp):
AATAATAACAA
Found at i:37830329 original size:21 final size:22
Alignment explanation
Indices: 37830293--37830373 Score: 74
Period size: 22 Copynumber: 3.7 Consensus size: 22
37830283 ATATCAAAAC
37830293 AATAACAACAAAATAGTAACAA
1 AATAACAACAAAATAGTAACAA
* * *
37830315 TATAATAAC-AAATAGTAGCAA
1 AATAACAACAAAATAGTAACAA
* * * *
37830336 AATAAAAATAAAATAGTAGCGA
1 AATAACAACAAAATAGTAACAA
* *
37830358 AACAATAACAAAATAG
1 AATAACAACAAAATAG
37830374 CTGATTCGGG
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
21 17 0.35
22 31 0.65
ACGTcount: A:0.64, C:0.10, G:0.09, T:0.17
Consensus pattern (22 bp):
AATAACAACAAAATAGTAACAA
Found at i:37833174 original size:5 final size:5
Alignment explanation
Indices: 37833164--37833194 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
37833154 GTGGAGTTAA
37833164 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT A
37833195 TTTTATAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:37834558 original size:18 final size:17
Alignment explanation
Indices: 37834535--37834576 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
37834525 CAAAGTTGTT
*
37834535 AAAATTGAATTAGATAAA
1 AAAATT-AAGTAGATAAA
*
37834553 AAAATTAAGTATAT-AA
1 AAAATTAAGTAGATAAA
37834569 AAAATTAA
1 AAAATTAA
37834577 TGATCTAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 10 0.45
17 6 0.27
18 6 0.27
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (17 bp):
AAAATTAAGTAGATAAA
Found at i:37835220 original size:3 final size:3
Alignment explanation
Indices: 37835212--37835241 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
37835202 TAATCTTTTT
37835212 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
37835242 TGCCTATAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:37852191 original size:40 final size:39
Alignment explanation
Indices: 37852160--37852369 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
37852150 GGACTAAGAT
* *
37852160 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
37852200 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
37852240 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
37852280 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
37852320 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
37852359 CCGAAGGCATT
1 CCGAAGGCATT
37852370 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:37852323 original size:120 final size:120
Alignment explanation
Indices: 37852107--37852369 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
37852097 TTGAATGCTG
* *
37852107 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
37852171 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
37852227 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
37852290 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
37852346 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
37852370 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:37852389 original size:79 final size:80
Alignment explanation
Indices: 37852108--37852404 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
37852098 TGAATGCTGT
* ** * * * **
37852108 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
37852171 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
37852188 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
37852252 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
37852268 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
37852332 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
37852347 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
37852405 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:37857662 original size:42 final size:40
Alignment explanation
Indices: 37857616--37857697 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 40
37857606 TTCATATAAG
* * *
37857616 ATTGCAAATGGTTCATTTTCATTTTCATTTTTAGAAACCTA
1 ATTGCAAATAGATCATTTCCATTTTCATTTTT-GAAACCTA
* *
37857657 NATTGCAAATAGATCATTTCCCTTTTCATTTTTGGAACCTA
1 -ATTGCAAATAGATCATTTCCATTTTCATTTTTGAAACCTA
37857698 CATTCATTTC
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
41 7 0.20
42 28 0.80
ACGTcount: A:0.28, C:0.17, G:0.10, T:0.44
Consensus pattern (40 bp):
ATTGCAAATAGATCATTTCCATTTTCATTTTTGAAACCTA
Found at i:37868211 original size:5 final size:5
Alignment explanation
Indices: 37868201--37868225 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
37868191 TTATAAATAA
37868201 ATTAT ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT
37868226 TGATTTTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTAT
Found at i:37872490 original size:49 final size:49
Alignment explanation
Indices: 37872378--37872741 Score: 188
Period size: 49 Copynumber: 7.7 Consensus size: 49
37872368 AGGGTACAAT
* * * * * *
37872378 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGC--TCACACATCTAA
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGACTTTCATATATCGAA
* * *
37872426 GTCAATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAC
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAA
* * * * ** *
37872475 GCCGATGCCATGTCCCAGACAGCTCTTACATTGGCTCTCATCCATCGAT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAA
* * * * *
37872524 GTCGATGCCATGTCCCAGATAGGTCTTACACTGA----AACATGT-GAA
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAA
* * * * * *
37872568 GCTGATGTCATGTCCTAGACAGGTCTTACACT-AGCTTGCATATCTCGAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGA-CTTTCATATATCGAA
* * * * * *
37872617 GTCAATG-CATGCCCCAGACATGTCTTACACTAGCTCTTGTC-T-TA---AT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACT-G-ACTT-TCATATATCGAA
* * **
37872663 GTCGATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCATA-AT-GTG
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGA-CTTTCATATATCGAA
* *
37872711 GCCGATG-TATGTCCCAGACATGTCTTACACT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACT
37872742 AGCACACATC
Statistics
Matches: 239, Mismatches: 58, Indels: 40
0.71 0.17 0.12
Matches are distributed among these distances:
43 1 0.00
44 29 0.12
45 4 0.02
46 21 0.09
47 37 0.15
48 58 0.24
49 84 0.35
50 4 0.02
51 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAA
Found at i:37872548 original size:98 final size:97
Alignment explanation
Indices: 37872378--37872557 Score: 254
Period size: 98 Copynumber: 1.8 Consensus size: 97
37872368 AGGGTACAAT
* * *
37872378 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACACATCTAAGTCAATGCCATGTCCCA
1 GCCGATGCCATGTCCCAAACATGCTCTTACACTGGCTCACACATCGAAGTCAATGCCATGTCCCA
37872443 GACAGGTCTTACACTGACTTTCATATATCGAC
66 GACAGGTCTTACACTGACTTTCATATATCGAC
* * * * *
37872475 GCCGATGCCATGTCCCAGACA-GCTCTTACATTGGCTCTCATCCATCGATGTCGATGCCATGTCC
1 GCCGATGCCATGTCCCAAACATGCTCTTACACTGGCTCACA--CATCGAAGTCAATGCCATGTCC
*
37872539 CAGATAGGTCTTACACTGA
64 CAGACAGGTCTTACACTGA
37872558 AACATGTGAA
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
96 16 0.22
97 19 0.26
98 37 0.51
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (97 bp):
GCCGATGCCATGTCCCAAACATGCTCTTACACTGGCTCACACATCGAAGTCAATGCCATGTCCCA
GACAGGTCTTACACTGACTTTCATATATCGAC
Found at i:37872723 original size:47 final size:45
Alignment explanation
Indices: 37872571--37872744 Score: 156
Period size: 48 Copynumber: 3.7 Consensus size: 45
37872561 ATGTGAAGCT
* * * *
37872571 GATGTCATGTCCTAGACAGGTCTTACACTAGCT-TGCATATCTCGAGGTC
1 GATG-CATGTCCCAGACATGTCTTACACTAGCTCT-CATA-AT-GTGG-C
* * *
37872620 AATGCATGCCCCAGACATGTCTTACACTAGCTCTTGTCTTAATGT--C
1 GATGCATGTCCCAGACATGTCTTACACTAGCTC---TCATAATGTGGC
37872666 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGTGG-C
*
37872714 GATGTATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
37872745 ACACATCCAT
Statistics
Matches: 105, Mismatches: 11, Indels: 21
0.77 0.08 0.15
Matches are distributed among these distances:
45 8 0.08
46 17 0.16
47 26 0.25
48 45 0.43
49 4 0.04
50 1 0.01
51 3 0.03
52 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATGTGGC
Found at i:37872737 original size:94 final size:95
Alignment explanation
Indices: 37872571--37872744 Score: 237
Period size: 94 Copynumber: 1.8 Consensus size: 95
37872561 ATGTGAAGCT
* * * *
37872571 GATGTCATGTCCTAGACAGGTCTTACACTAGCTTGCATATCTCGAGGTCAATGCATGCCCCAGAC
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCATATATCGAGGCCAATGCATGCCCCAGAC
37872636 ATGTCTTACACTAGCTCTTGTCTTAATGTC
66 ATGTCTTACACTAGCTCTTGTCTTAATGTC
* * * *
37872666 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATA-AT-GTGGCCGATGTATGTCCCAG
1 GATGCCATGTCCCAGACA-GGTCTTACACTAGCT-TGCATATATCGAGGCCAATGCATGCCCCAG
37872728 ACATGTCTTACACTAGC
64 ACATGTCTTACACTAGC
37872745 ACACATCCAT
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
94 32 0.46
95 17 0.25
96 19 0.28
97 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (95 bp):
GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCATATATCGAGGCCAATGCATGCCCCAGAC
ATGTCTTACACTAGCTCTTGTCTTAATGTC
Found at i:37875772 original size:18 final size:18
Alignment explanation
Indices: 37875749--37875797 Score: 89
Period size: 18 Copynumber: 2.7 Consensus size: 18
37875739 AATGGTAAGT
*
37875749 ATGAAAATGGTTTCAAGC
1 ATGAAAATAGTTTCAAGC
37875767 ATGAAAATAGTTTCAAGC
1 ATGAAAATAGTTTCAAGC
37875785 ATGAAAATAGTTT
1 ATGAAAATAGTTT
37875798 GGCACATCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.43, C:0.08, G:0.18, T:0.31
Consensus pattern (18 bp):
ATGAAAATAGTTTCAAGC
Found at i:37886432 original size:46 final size:46
Alignment explanation
Indices: 37886378--37886550 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
37886368 TGGTTGATCA
37886378 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
37886424 TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
37886469 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* **
37886517 TCCGAGCTCGTTGAGTTGAGTCTAAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
37886551 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:37886545 original size:93 final size:93
Alignment explanation
Indices: 37886376--37886545 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
37886366 GATGGTTGAT
*
37886376 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAGTT
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAACTCGTTGAGTT
*
37886441 GAGTCCGAGTTCGTGAAATGTAACTAGG
66 GAGTCCAAGTTCGTGAAATGTAACTAGG
* *
37886469 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGCTCGTTGAGTT
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAACTCGTTGAGTT
*
37886534 GAGTCTAAGTTC
66 GAGTCCAAGTTC
37886546 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAACTCGTTGAGTT
GAGTCCAAGTTCGTGAAATGTAACTAGG
Found at i:37908167 original size:21 final size:20
Alignment explanation
Indices: 37908139--37908180 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
37908129 AGATCTTCAG
*
37908139 TCTTGAT-GATGAATTCGGCT
1 TCTTGATGGATCAA-TCGGCT
37908159 TCTTAGATGGATCAATCGGCT
1 TCTT-GATGGATCAATCGGCT
37908180 T
1 T
37908181 TCCTTGAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 4 0.21
21 10 0.53
22 5 0.26
ACGTcount: A:0.21, C:0.17, G:0.24, T:0.38
Consensus pattern (20 bp):
TCTTGATGGATCAATCGGCT
Found at i:37912203 original size:42 final size:42
Alignment explanation
Indices: 37912157--37912241 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
37912147 ATTTCTTTCA
*
37912157 TTGCTGGATTTAACCGATGCTATGCATCTACTAATGACTCTT
1 TTGCTGGATTTAACCGATGCTATGCATCTACTAATGAATCTT
37912199 TTGCTGGATTTAACCGATGCTATGCATCTACTAATGAATCTT
1 TTGCTGGATTTAACCGATGCTATGCATCTACTAATGAATCTT
37912241 T
1 T
37912242 CCCTTCTTCA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (42 bp):
TTGCTGGATTTAACCGATGCTATGCATCTACTAATGAATCTT
Found at i:37916710 original size:87 final size:86
Alignment explanation
Indices: 37916563--37916725 Score: 229
Period size: 87 Copynumber: 1.9 Consensus size: 86
37916553 AAATTTAAGT
* *
37916563 TCGGTGAATTCATCAAGTCTATCTCAATAGGAACACCCAAATTCTAGGATATGAACTCATTAAGA
1 TCGGTGAATTCATCAAGTCTATCTCAATAAGAACACCCAAATTCTAGGATATAAACTCATTAAGA
37916628 GTAATAAACTCAACCTCTCAAG
66 GTAA-AAACTCAACCTCTCAAG
* * * * * *
37916650 TCGGTGAATTCATTAAGTAC-GTCTCAATAAGACCACCCAATTTCTAGGCTATAAATTCATTAAG
1 TCGGTGAATTCATCAAGT-CTATCTCAATAAGAACACCCAAATTCTAGGATATAAACTCATTAAG
37916714 AGTAAAAACTCA
65 AGTAAAAACTCA
37916726 TCCTTACACA
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
86 7 0.10
87 59 0.88
88 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (86 bp):
TCGGTGAATTCATCAAGTCTATCTCAATAAGAACACCCAAATTCTAGGATATAAACTCATTAAGA
GTAAAAACTCAACCTCTCAAG
Found at i:37917471 original size:21 final size:22
Alignment explanation
Indices: 37917447--37917491 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
37917437 TAACATCACA
*
37917447 ATATT-TAAATAAATTAAA-CTC
1 ATATTATAAACAAA-TAAATCTC
37917468 ATATTATAAACAAATAAATCTC
1 ATATTATAAACAAATAAATCTC
37917490 AT
1 AT
37917492 GTATTTCGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.36
Consensus pattern (22 bp):
ATATTATAAACAAATAAATCTC
Found at i:37918811 original size:5 final size:5
Alignment explanation
Indices: 37918801--37918859 Score: 50
Period size: 5 Copynumber: 11.6 Consensus size: 5
37918791 AAAAAGAATC
*
37918801 TTATT TTATT TTATT TT-TT ATT-TT TTATTT TTATTT TTATT TTATA
1 TTATT TTATT TTATT TTATT -TTATT TTA-TT TTA-TT TTATT TTATT
* *
37918847 TTAAT TTAGT TTA
1 TTATT TTATT TTA
37918860 GGCTAATTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
4 4 0.09
5 32 0.68
6 11 0.23
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (5 bp):
TTATT
Found at i:37918821 original size:7 final size:7
Alignment explanation
Indices: 37918809--37918848 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
37918799 TCTTATTTTA
37918809 TTTTATT
1 TTTTATT
37918816 TTTTATT
1 TTTTATT
37918823 TTTTA-T
1 TTTTATT
37918829 TTTTA-T
1 TTTTATT
37918835 TTTTATT
1 TTTTATT
*
37918842 TTATATT
1 TTTTATT
37918849 AATTTAGTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
6 12 0.39
7 19 0.61
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTATT
Found at i:37918824 original size:6 final size:6
Alignment explanation
Indices: 37918804--37918848 Score: 56
Period size: 6 Copynumber: 7.2 Consensus size: 6
37918794 AAGAATCTTA
37918804 TTTTA- TTTTATT TTTTATT TTTTAT TTTTAT TTTTAT TTTATAT T
1 TTTTAT TTTTA-T TTTTA-T TTTTAT TTTTAT TTTTAT TTT-TAT T
37918849 AATTTAGTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.14
6 16 0.43
7 16 0.43
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:37918828 original size:19 final size:19
Alignment explanation
Indices: 37918804--37918848 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
37918794 AAGAATCTTA
37918804 TTTTA-TTTTATTTTTTATT
1 TTTTATTTTTA-TTTTTATT
37918823 TTTTATTTTTATTTTTATT
1 TTTTATTTTTATTTTTATT
*
37918842 TTATATT
1 TTTTATT
37918849 AATTTAGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 19 0.79
20 5 0.21
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (19 bp):
TTTTATTTTTATTTTTATT
Found at i:37921932 original size:24 final size:24
Alignment explanation
Indices: 37921905--37921953 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
37921895 AGGTATGCTC
*
37921905 ATTGCTTGGATTATGAGTATATCT
1 ATTGCTTAGATTATGAGTATATCT
*
37921929 ATTGCTTAGTTTATGAGTATATCT
1 ATTGCTTAGATTATGAGTATATCT
37921953 A
1 A
37921954 CTTAGTCTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.27, C:0.08, G:0.18, T:0.47
Consensus pattern (24 bp):
ATTGCTTAGATTATGAGTATATCT
Found at i:37926235 original size:3 final size:3
Alignment explanation
Indices: 37926217--37926252 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
37926207 TGCCCCTACA
* *
37926217 ACC ACC AGC ACA ACC ACC ACC ACC ACC ACC ACC ACC
1 ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC
37926253 GCGACATCCT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.36, C:0.61, G:0.03, T:0.00
Consensus pattern (3 bp):
ACC
Found at i:37929766 original size:48 final size:49
Alignment explanation
Indices: 37929667--37929768 Score: 179
Period size: 49 Copynumber: 2.1 Consensus size: 49
37929657 ATTATGAATT
*
37929667 AGTTTTTGAAAGAAAATTATGATAATGAAAAAAAAAATCTCATTAGATC
1 AGTTTTTGAAAGAAAATTATGATAATGAAAAAAAAAATCACATTAGATC
*
37929716 AGTTTTTGAAAGAAAATTATGATAATG-AAAAAAAATTCACATTAGATC
1 AGTTTTTGAAAGAAAATTATGATAATGAAAAAAAAAATCACATTAGATC
37929764 AGTTT
1 AGTTT
37929769 CGTTCCCTAA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
48 24 0.47
49 27 0.53
ACGTcount: A:0.49, C:0.06, G:0.13, T:0.32
Consensus pattern (49 bp):
AGTTTTTGAAAGAAAATTATGATAATGAAAAAAAAAATCACATTAGATC
Found at i:37933605 original size:50 final size:50
Alignment explanation
Indices: 37933494--37933605 Score: 161
Period size: 50 Copynumber: 2.2 Consensus size: 50
37933484 AGTTGTGTGA
* *
37933494 CAGGCCGTGTGGCCATGTGAGGCACTGTGATGAGCCACACGGACATGTTC
1 CAGGCCGTGTGGCCATGTGAGGCACTATAATGAGCCACACGGACATGTTC
** **
37933544 GGGGCCGTGTGGCCATGTGAGGCACTATAATGAGCCACACGGATGTGTTC
1 CAGGCCGTGTGGCCATGTGAGGCACTATAATGAGCCACACGGACATGTTC
*
37933594 CAGGCCATGTGG
1 CAGGCCGTGTGG
37933606 ACCACACGGG
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.20, C:0.24, G:0.36, T:0.21
Consensus pattern (50 bp):
CAGGCCGTGTGGCCATGTGAGGCACTATAATGAGCCACACGGACATGTTC
Found at i:37944585 original size:16 final size:18
Alignment explanation
Indices: 37944553--37944587 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
37944543 TAATTAACCC
37944553 CTCAATTAAACTAATTTT
1 CTCAATTAAACTAATTTT
37944571 CTCAATT-AA-TAATTTT
1 CTCAATTAAACTAATTTT
37944587 C
1 C
37944588 CTAGACATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 2 0.12
18 7 0.41
ACGTcount: A:0.37, C:0.17, G:0.00, T:0.46
Consensus pattern (18 bp):
CTCAATTAAACTAATTTT
Found at i:37954291 original size:24 final size:24
Alignment explanation
Indices: 37954264--37954318 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
37954254 TTCAACTTTT
* *
37954264 CATCTTTCTTAAC-CTTTCACCTTC
1 CATCTTCCTTAACTC-TTCACATTC
*
37954288 CATCTTCCTTAACTCTTCACATTT
1 CATCTTCCTTAACTCTTCACATTC
37954312 CATCTTC
1 CATCTTC
37954319 TTGTAACCCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 26 0.96
25 1 0.04
ACGTcount: A:0.18, C:0.36, G:0.00, T:0.45
Consensus pattern (24 bp):
CATCTTCCTTAACTCTTCACATTC
Found at i:37954425 original size:44 final size:44
Alignment explanation
Indices: 37954375--37954684 Score: 620
Period size: 44 Copynumber: 7.0 Consensus size: 44
37954365 CTTCATATGT
37954375 ATATAAGAGTATACTACTTGTAATGATGATAGAAAAGAAGAGAA
1 ATATAAGAGTATACTACTTGTAATGATGATAGAAAAGAAGAGAA
37954419 ATATAAGAGTATACTACTTGTAATGATGATAGAAAAGAAGAGAA
1 ATATAAGAGTATACTACTTGTAATGATGATAGAAAAGAAGAGAA
37954463 ATATAAGAGTATACTACTTGTAATGATGATAGAAAAGAAGAGAA
1 ATATAAGAGTATACTACTTGTAATGATGATAGAAAAGAAGAGAA
37954507 ATATAAGAGTATACTACTTGTAATGATGATAGAAAAGAAGAGAA
1 ATATAAGAGTATACTACTTGTAATGATGATAGAAAAGAAGAGAA
37954551 ATATAAGAGTATACTACTTGTAATGATGATAGAAAAGAAGAGAA
1 ATATAAGAGTATACTACTTGTAATGATGATAGAAAAGAAGAGAA
37954595 ATATAAGAGTATACTACTTGTAATGATGATAGAAAAGAAGAGAA
1 ATATAAGAGTATACTACTTGTAATGATGATAGAAAAGAAGAGAA
37954639 ATATAAGAGTATACTACTTGTAATGATGATAGAAAAGAAGAGAA
1 ATATAAGAGTATACTACTTGTAATGATGATAGAAAAGAAGAGAA
37954683 AT
1 AT
37954685 GCAATAAAAA
Statistics
Matches: 266, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 266 1.00
ACGTcount: A:0.50, C:0.05, G:0.20, T:0.25
Consensus pattern (44 bp):
ATATAAGAGTATACTACTTGTAATGATGATAGAAAAGAAGAGAA
Found at i:37954990 original size:22 final size:23
Alignment explanation
Indices: 37954955--37954997 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
37954945 CTAATGTATT
37954955 AAATAATATATTTTA-TAATTTA
1 AAATAATATATTTTATTAATTTA
37954977 AAAT-ATATATTTTTATTAATT
1 AAATAATATA-TTTTATTAATT
37954998 AAACCAGGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.26
22 9 0.47
23 5 0.26
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
AAATAATATATTTTATTAATTTA
Found at i:37955667 original size:40 final size:40
Alignment explanation
Indices: 37955612--37955692 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
37955602 ATTACACAAT
37955612 TCGAGTTATTCGAAAATCCAAATAAGAAAAGGCAAAACTA
1 TCGAGTTATTCGAAAATCCAAATAAGAAAAGGCAAAACTA
*
37955652 TCGAGTTATTCGAAAATTCAAATAAGAAAAGGCAAAACTA
1 TCGAGTTATTCGAAAATCCAAATAAGAAAAGGCAAAACTA
37955692 T
1 T
37955693 GTCGTTTTGA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.49, C:0.14, G:0.15, T:0.22
Consensus pattern (40 bp):
TCGAGTTATTCGAAAATCCAAATAAGAAAAGGCAAAACTA
Found at i:37955842 original size:42 final size:42
Alignment explanation
Indices: 37955793--37955873 Score: 146
Period size: 42 Copynumber: 1.9 Consensus size: 42
37955783 CATTAAGTGA
37955793 AAAGACAAAACAATTATATT-ATTTATATAGTTAAATAATTTT
1 AAAGACAAAACAATTATATTGA-TTATATAGTTAAATAATTTT
37955835 AAAGACAAAACAATTATATTGATTATATAGTTAAATAAT
1 AAAGACAAAACAATTATATTGATTATATAGTTAAATAAT
37955874 ATTATAATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
42 37 0.97
43 1 0.03
ACGTcount: A:0.52, C:0.05, G:0.06, T:0.37
Consensus pattern (42 bp):
AAAGACAAAACAATTATATTGATTATATAGTTAAATAATTTT
Found at i:37959662 original size:11 final size:11
Alignment explanation
Indices: 37959648--37959677 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
37959638 AAATGCCTTT
37959648 AAAATAATAAC
1 AAAATAATAAC
37959659 AAAATTAATAAC
1 AAAA-TAATAAC
37959671 AAAATAA
1 AAAATAA
37959678 GTTTTTTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (11 bp):
AAAATAATAAC
Found at i:37962558 original size:44 final size:46
Alignment explanation
Indices: 37962497--37962760 Score: 234
Period size: 47 Copynumber: 5.7 Consensus size: 46
37962487 GTGCTGACGT
* *
37962497 ATGTCCCAGACATGTCTTACACTGGCACTCATC-TTA-GCCGGTGC
1 ATGTCCCAGACACGTCTTACACTGGCACTCATCATTACGCCGATGC
* * *
37962541 ATGTCCTAGACACGTCTTACACTGGCTAC-CATCATTGAGGCTGATGC
1 ATGTCCCAGACACGTCTTACACTGGC-ACTCATCATT-ACGCCGATGC
*
37962588 ATGTCCCAGACACGTCTTACACTGGCACTCATCTTTACGCCGATGCC
1 ATGTCCCAGACACGTCTTACACTGGCACTCATCATTACGCCGATG-C
* * * * *
37962635 ATGTCCCAGACATGGTCTTACACTGGCTA-TCGTAATGT-GGCTGATGC
1 ATGTCCCAGACA-CGTCTTACACTGGC-ACTCATCAT-TACGCCGATGC
* * * * * *
37962682 ATGTCCCAGGCACGTCTTACACTAGCCCTCGTC-TCAATGCCGATGCC
1 ATGTCCCAGACACGTCTTACACTGGCACTCATCAT-TACGCCGATG-C
* *
37962729 ATGTCCCAGACATGGTCTTACACTGGCTCTCA
1 ATGTCCCAGACA-CGTCTTACACTGGCACTCA
37962761 CATAACCCAA
Statistics
Matches: 179, Mismatches: 28, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
44 28 0.16
45 5 0.03
46 32 0.18
47 74 0.41
48 38 0.21
49 2 0.01
ACGTcount: A:0.21, C:0.31, G:0.20, T:0.27
Consensus pattern (46 bp):
ATGTCCCAGACACGTCTTACACTGGCACTCATCATTACGCCGATGC
Found at i:37962599 original size:47 final size:47
Alignment explanation
Indices: 37962401--37962756 Score: 216
Period size: 47 Copynumber: 7.5 Consensus size: 47
37962391 CCGATACCAA
* * * **
37962401 GTCCCAGACATGGTCTTACACTGGCTATCTTCAACGAGGCCGATGCCAT
1 GTCCCAGACA-CGTCTTACACTGGCTACCATCATTGAGGCCGATG-CAT
* * * * * * *
37962450 GTCCCAAACATGGTCTTACACTAGTGCT--CAT-GTATAAGTGCTGACGTAT
1 GTCCCAGACA-CGTCTTACACT-G-GCTACCATCAT-TGAG-GCCGATGCAT
* *
37962499 GTCCCAGACATGTCTTACACTGGC-ACTCATC-TT-A-GCCGGTGCAT
1 GTCCCAGACACGTCTTACACTGGCTAC-CATCATTGAGGCCGATGCAT
* *
37962543 GTCCTAGACACGTCTTACACTGGCTACCATCATTGAGGCTGATGCAT
1 GTCCCAGACACGTCTTACACTGGCTACCATCATTGAGGCCGATGCAT
* *
37962590 GTCCCAGACACGTCTTACACTGGC-ACTCATC-TTTACGCCGATGCCAT
1 GTCCCAGACACGTCTTACACTGGCTAC-CATCATTGAGGCCGATG-CAT
* * * * * *
37962637 GTCCCAGACATGGTCTTACACTGGCTATCGT-AATGTGGCTGATGCAT
1 GTCCCAGACA-CGTCTTACACTGGCTACCATCATTGAGGCCGATGCAT
* * * * *
37962684 GTCCCAGGCACGTCTTACACTAGC--CC-TCGTCTCAATGCCGATGCCAT
1 GTCCCAGACACGTCTTACACTGGCTACCATCAT-T-GAGGCCGATG-CAT
*
37962731 GTCCCAGACATGGTCTTACACTGGCT
1 GTCCCAGACA-CGTCTTACACTGGCT
37962757 CTCACATAAC
Statistics
Matches: 240, Mismatches: 44, Indels: 46
0.73 0.13 0.14
Matches are distributed among these distances:
43 1 0.00
44 33 0.14
45 5 0.02
46 33 0.14
47 74 0.31
48 48 0.20
49 37 0.15
50 6 0.03
51 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (47 bp):
GTCCCAGACACGTCTTACACTGGCTACCATCATTGAGGCCGATGCAT
Found at i:37962690 original size:94 final size:93
Alignment explanation
Indices: 37962439--37962756 Score: 376
Period size: 94 Copynumber: 3.4 Consensus size: 93
37962429 CTTCAACGAG
* * * *
37962439 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGTGCTCAT-GTATAAGT-GCTGACGTATGTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT-G-GCT-ATCGTA-ATGTGGCTGATGCATGTC
*
37962502 CCAGACATGTCTTACACTGGCACTCATC-TTA
62 CCAGACACGTCTTACACTGGCACTCATCTTTA
* * * * * * *
37962533 GCCGGTG-CATGTCCTAGACA-CGTCTTACACTGGCTACCATCATTGAGGCTGATGCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGT-AATGTGGCTGATGCATGTCCCA
37962596 GACACGTCTTACACTGGCACTCATCTTTA
65 GACACGTCTTACACTGGCACTCATCTTTA
37962625 CGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTAATGTGGCTGATGCATGTCCCA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTAATGTGGCTGATGCATGTCCCA
* * * * **
37962690 GGCACGTCTTACACTAGCCCTCGTCTCAA
65 GACACGTCTTACACTGGCACTCATCTTTA
37962719 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
37962757 CTCACATAAC
Statistics
Matches: 191, Mismatches: 26, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
89 1 0.01
90 5 0.03
91 40 0.21
92 13 0.07
93 17 0.09
94 98 0.51
95 17 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (93 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTAATGTGGCTGATGCATGTCCCAG
ACACGTCTTACACTGGCACTCATCTTTA
Found at i:37967441 original size:31 final size:31
Alignment explanation
Indices: 37967403--37967464 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
37967393 TAGCTGACAC
37967403 ACTAAACACTTAGAGACAAACTCCAAAATGT
1 ACTAAACACTTAGAGACAAACTCCAAAATGT
37967434 ACTAAACACTTAGAGACAAACTCCAAAATGT
1 ACTAAACACTTAGAGACAAACTCCAAAATGT
37967465 CTCTTTTCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.48, C:0.23, G:0.10, T:0.19
Consensus pattern (31 bp):
ACTAAACACTTAGAGACAAACTCCAAAATGT
Found at i:37968733 original size:39 final size:39
Alignment explanation
Indices: 37968682--37968897 Score: 274
Period size: 39 Copynumber: 5.5 Consensus size: 39
37968672 GCCTTCGGGG
* **
37968682 CTTTAAGCCCGGATAT-ATTCCCAGCACGTAGCCTACGGA
1 CTTTAAGTCCGGATATAATTCCC-GCATATAGCCTACGGA
* * * *
37968721 CCTTAAGTCCGGATATAATTCCTGCACATAGCCTGCGGA
1 CTTTAAGTCCGGATATAATTCCCGCATATAGCCTACGGA
* *
37968760 CTTTAAGTCCGGATATAA-TCCTTGCATATAGCCTACAGA
1 CTTTAAGTCCGGATATAATTCC-CGCATATAGCCTACGGA
*
37968799 CTTTAAGTCCGGATATAATTCTCGCATATAGCCTACGGA
1 CTTTAAGTCCGGATATAATTCCCGCATATAGCCTACGGA
* *
37968838 CTTTAAGTCCGGATGTAATTCCCGCATATAGCCTGCGGA
1 CTTTAAGTCCGGATATAATTCCCGCATATAGCCTACGGA
* *
37968877 CTTTTAGTCCAGATATAATTC
1 CTTTAAGTCCGGATATAATTC
37968898 TCAAATATCA
Statistics
Matches: 156, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
38 3 0.02
39 146 0.94
40 7 0.04
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (39 bp):
CTTTAAGTCCGGATATAATTCCCGCATATAGCCTACGGA
Found at i:37968844 original size:117 final size:117
Alignment explanation
Indices: 37968682--37968895 Score: 322
Period size: 117 Copynumber: 1.8 Consensus size: 117
37968672 GCCTTCGGGG
* *
37968682 CTTTAAGCCCGGATATATTCCCAGCACGTAGCCTACGGACCTTAAGTCCGGATATAATTCCTGCA
1 CTTTAAGCCCGGATATATTCCCAGCACATAGCCTACGGACCTTAAGTCCGGATATAATTCCCGCA
*
37968747 CATAGCCTGCGGACTTTAAGTCCGGATATAATCCTTGCATATAGCCTACAGA
66 CATAGCCTGCGGACTTTAAGTCCAGATATAATCCTTGCATATAGCCTACAGA
* * * * *
37968799 CTTTAAGTCCGGATATAATTCTC-GCATATAGCCTACGGACTTTAAGTCCGGATGTAATTCCCGC
1 CTTTAAGCCCGGATAT-ATTCCCAGCACATAGCCTACGGACCTTAAGTCCGGATATAATTCCCGC
* *
37968863 ATATAGCCTGCGGACTTTTAGTCCAGATATAAT
65 ACATAGCCTGCGGACTTTAAGTCCAGATATAAT
37968896 TCTCAAATAT
Statistics
Matches: 86, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
117 81 0.94
118 5 0.06
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (117 bp):
CTTTAAGCCCGGATATATTCCCAGCACATAGCCTACGGACCTTAAGTCCGGATATAATTCCCGCA
CATAGCCTGCGGACTTTAAGTCCAGATATAATCCTTGCATATAGCCTACAGA
Found at i:37972071 original size:44 final size:44
Alignment explanation
Indices: 37972008--37972094 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
37971998 TTACGCGAAT
* *
37972008 AAACCAAGATGTCATCAATAAAAATGATGACGAACCTATCCAAG
1 AAACCAAGATGTCATCAATAAAAACGACGACGAACCTATCCAAG
37972052 AAACCAAGATGTCATCAATAAAAACGACGACGAACCTATCCAA
1 AAACCAAGATGTCATCAATAAAAACGACGACGAACCTATCCAA
37972095 ATACGGTCAG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.48, C:0.23, G:0.13, T:0.16
Consensus pattern (44 bp):
AAACCAAGATGTCATCAATAAAAACGACGACGAACCTATCCAAG
Found at i:37975807 original size:49 final size:49
Alignment explanation
Indices: 37975734--37976147 Score: 288
Period size: 49 Copynumber: 8.7 Consensus size: 49
37975724 GTTAAGTTGT
*
37975734 CGATGCCATGTCCCAGACAAGGTCTTACACTGGCTATCTTCATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCTTCATCGAGGC
** * * *
37975783 CGATGCCATGTCTTAGACATGGTCTTACAATGGTTATTTTCATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCTTCATCGAGGC
* * *
37975832 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGT-AT-AAGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATC-T-TCATCGAG-GC
* * * * ** * *
37975882 TGATG-CATGTCCCAAACAT-GTCTTACATTAGC-A-C-GAAGCTTA-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCTTCATC-GAGGC
* * * * *
37975926 CGATG-CATGTCCCAGACA-CGTCTTACATTGGCTACCATCATTGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCTTCATCGAGGC
** * * * * *
37975973 TAATG-CATGTCCCAGACA-CGTCTTACACTGGC-ACTCATC-TCTACGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCTTCATCGAGGC
* * * *
37976019 CGATGCCATGTCCCAGACATGGTCTTACACTGGATATCATAAT-GTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCTTCATCGAGGC
* * * ** * * *
37976067 TGATG-CATGTCCCAGACA-CGTCTTACACTAGCCCTCATC-TCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCTTCATCGAGGC
37976113 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT
37976148 CTCACATAAC
Statistics
Matches: 286, Mismatches: 60, Indels: 39
0.74 0.16 0.10
Matches are distributed among these distances:
44 31 0.11
45 2 0.01
46 32 0.11
47 75 0.26
48 45 0.16
49 91 0.32
50 9 0.03
51 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCTTCATCGAGGC
Found at i:37976075 original size:94 final size:93
Alignment explanation
Indices: 37975734--37976147 Score: 386
Period size: 94 Copynumber: 4.4 Consensus size: 93
37975724 GTTAAGTTGT
* * * * **
37975734 CGATGCCATGTCCCAGACAAGGTCTTACACTGGCTATCTTCATCGAGGCCGATGCCATGTCTTAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAAT-GAGGCTGATG-CATGTCCCAG
* * * * ** *
37975799 ACATGGTCTTACAATGGTTA-TTTTCATCGAGGC
64 ACA-CGTCTTACACTAG-CACTCATC-TCTA-GC
* * * * * *
37975832 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATAAGTGCTGATGCATGTCCCAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AATGAG-GCTGATGCATGTCCCAG
* * ** *
37975897 ACATGTCTTACATTAGCACGAAGCT-TAGC
64 ACACGTCTTACACTAGCACTCATCTCTAGC
* * * * *
37975926 CGATG-CATGTCCCAGACA-CGTCTTACATTGGCTACCATCATTGAGGCTAATGCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AATGAGGCTGATGCATGTCCCAGA
* *
37975989 CACGTCTTACACTGGCACTCATCTCTACGT
65 CACGTCTTACACTAGCACTCATCTCTA-GC
* *
37976019 CGATGCCATGTCCCAGACATGGTCTTACACTGGATATCATAATGTGGCTGATGCATGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATGAGGCTGATGCATGTCCCAGAC
* *
37976084 ACGTCTTACACTAGCCCTCATCTCAATGC
66 ACGTCTTACACTAGCACTCATCTCTA-GC
37976113 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT
37976148 CTCACATAAC
Statistics
Matches: 258, Mismatches: 51, Indels: 18
0.79 0.16 0.06
Matches are distributed among these distances:
91 34 0.13
92 19 0.07
93 19 0.07
94 100 0.39
95 17 0.07
96 2 0.01
97 11 0.04
98 48 0.19
99 8 0.03
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (93 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATGAGGCTGATGCATGTCCCAGAC
ACGTCTTACACTAGCACTCATCTCTAGC
Found at i:37978196 original size:18 final size:18
Alignment explanation
Indices: 37978173--37978225 Score: 50
Period size: 18 Copynumber: 3.4 Consensus size: 18
37978163 CTTAAGGATG
37978173 TTTTAGTGTAATGTAAAA
1 TTTTAGTGTAATGTAAAA
37978191 TTTTAG-G--ATGT----
1 TTTTAGTGTAATGTAAAA
37978202 -TTTAGTGTAATGTAAAA
1 TTTTAGTGTAATGTAAAA
37978219 TTTTAGT
1 TTTTAGT
37978226 CTCGTGACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 16
0.63 0.00 0.37
Matches are distributed among these distances:
10 5 0.19
11 1 0.04
13 4 0.15
15 4 0.15
17 1 0.04
18 12 0.44
ACGTcount: A:0.32, C:0.00, G:0.19, T:0.49
Consensus pattern (18 bp):
TTTTAGTGTAATGTAAAA
Found at i:37978207 original size:28 final size:28
Alignment explanation
Indices: 37978167--37978224 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
37978157 TGTTGTCTTA
37978167 AGGATGTTTTAGTGTAATGTAAAATTTT
1 AGGATGTTTTAGTGTAATGTAAAATTTT
37978195 AGGATGTTTTAGTGTAATGTAAAATTTT
1 AGGATGTTTTAGTGTAATGTAAAATTTT
37978223 AG
1 AG
37978225 TCTCGTGACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.45
Consensus pattern (28 bp):
AGGATGTTTTAGTGTAATGTAAAATTTT
Found at i:37980494 original size:16 final size:18
Alignment explanation
Indices: 37980453--37980494 Score: 54
Period size: 16 Copynumber: 2.5 Consensus size: 18
37980443 AAGTAAATGT
37980453 TATATAATTTTGAAACTA
1 TATATAATTTTGAAACTA
*
37980471 CA-ATAATTTT-AAA-TA
1 TATATAATTTTGAAACTA
37980486 TATATAATT
1 TATATAATT
37980495 AAAAGCATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
15 3 0.14
16 9 0.43
17 8 0.38
18 1 0.05
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (18 bp):
TATATAATTTTGAAACTA
Found at i:37982472 original size:47 final size:47
Alignment explanation
Indices: 37982418--37982514 Score: 185
Period size: 47 Copynumber: 2.1 Consensus size: 47
37982408 TATTAGTAGT
37982418 AGTAGTCGGTGCATCGATTTTCTTCCAAATTGATTTTGAAACATTCA
1 AGTAGTCGGTGCATCGATTTTCTTCCAAATTGATTTTGAAACATTCA
*
37982465 AGTAGTCGGTGCATCTATTTTCTTCCAAATTGATTTTGAAACATTCA
1 AGTAGTCGGTGCATCGATTTTCTTCCAAATTGATTTTGAAACATTCA
37982512 AGT
1 AGT
37982515 GGGACAAGCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.39
Consensus pattern (47 bp):
AGTAGTCGGTGCATCGATTTTCTTCCAAATTGATTTTGAAACATTCA
Found at i:37987361 original size:41 final size:41
Alignment explanation
Indices: 37987304--37987397 Score: 116
Period size: 41 Copynumber: 2.3 Consensus size: 41
37987294 TTGTACTAGA
* * * * * *
37987304 TGTATCGTATCGAGCCTTGAGCTTAGTAGGCTTCGTGCTGG
1 TGTATCGTATCAAGCCTCGAGCCTAGCAAGCTTCGTGCCGG
*
37987345 TGTATTGTATCAAGCCTCGAGCCTAGCAAGCTTCGTGCCGG
1 TGTATCGTATCAAGCCTCGAGCCTAGCAAGCTTCGTGCCGG
*
37987386 TGTGTCGTATCA
1 TGTATCGTATCA
37987398 GGTAACTTGT
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.17, C:0.22, G:0.29, T:0.32
Consensus pattern (41 bp):
TGTATCGTATCAAGCCTCGAGCCTAGCAAGCTTCGTGCCGG
Found at i:37988613 original size:23 final size:23
Alignment explanation
Indices: 37988583--37988628 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
37988573 AATCCTGAGT
*
37988583 TAATTTAAATGTTCCCTAAGCTC
1 TAATTTAAATGATCCCTAAGCTC
*
37988606 TAATTTAAATGATCTCTAAGCTC
1 TAATTTAAATGATCCCTAAGCTC
37988629 GATTTAAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.39
Consensus pattern (23 bp):
TAATTTAAATGATCCCTAAGCTC
Found at i:37989488 original size:3 final size:3
Alignment explanation
Indices: 37989480--37989566 Score: 60
Period size: 3 Copynumber: 30.3 Consensus size: 3
37989470 AATATATTAA
* *
37989480 ATT ATT ATT CTT ATT ATTT ATT ATT A-T AGTT -TT A-T ATT -TA ATT
1 ATT ATT ATT ATT ATT A-TT ATT ATT ATT A-TT ATT ATT ATT ATT ATT
* * * *
37989523 ATT ATT TTT ATT GTT ATT ATT ATT -TA ATT AAT ATT A-T ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
37989567 AATTAAATAA
Statistics
Matches: 64, Mismatches: 12, Indels: 16
0.70 0.13 0.17
Matches are distributed among these distances:
2 10 0.16
3 50 0.78
4 4 0.06
ACGTcount: A:0.32, C:0.01, G:0.02, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:37989564 original size:40 final size:39
Alignment explanation
Indices: 37989472--37989566 Score: 97
Period size: 40 Copynumber: 2.4 Consensus size: 39
37989462 TGTGTTAAAA
* *
37989472 TATATTAAATTATTATTCTTATTATTTATTATTATAGTTT
1 TATATTATATTATTATTCTTATTAGTTATTATTATA-TTT
*
37989512 TATATT-TAATTATTATTTTTATT-GTTATTATTAT-TTAAT
1 TATATTAT-ATTATTATTCTTATTAGTTATTATTATATT--T
37989551 TAATATTATATTATTA
1 T-ATATTATATTATTA
37989567 AATTAAATAA
Statistics
Matches: 47, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
37 2 0.04
39 12 0.26
40 32 0.68
41 1 0.02
ACGTcount: A:0.34, C:0.01, G:0.02, T:0.63
Consensus pattern (39 bp):
TATATTATATTATTATTCTTATTAGTTATTATTATATTT
Found at i:38000097 original size:33 final size:33
Alignment explanation
Indices: 38000046--38000123 Score: 111
Period size: 33 Copynumber: 2.3 Consensus size: 33
38000036 TAAACATATA
* *
38000046 AACAATCGATTAAAAAGAAGTAGTATTCTAACAT
1 AACAATCGATT-CAAAGAAGCAGTATTCTAACAT
* *
38000080 AATAATTGATTCAAAGAAGCAGTATTCTAACAT
1 AACAATCGATTCAAAGAAGCAGTATTCTAACAT
38000113 AACAATCGATT
1 AACAATCGATT
38000124 TAAACATATA
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
33 29 0.76
34 9 0.24
ACGTcount: A:0.47, C:0.13, G:0.12, T:0.28
Consensus pattern (33 bp):
AACAATCGATTCAAAGAAGCAGTATTCTAACAT
Found at i:38000234 original size:108 final size:108
Alignment explanation
Indices: 38000111--38000315 Score: 331
Period size: 108 Copynumber: 1.9 Consensus size: 108
38000101 GTATTCTAAC
* *
38000111 ATAACAATCGATTTAAACATATAAATAATTGATTTAAAAGAAGTAATATT-CTAACATAACAATC
1 ATAACAATCGATTTAAACATATAAACAATTGATTCAAAAGAAGTAATATTAC-AACATAACAATC
*
38000175 AATTTAAACATATAAACAATCGATTCAAAAGAAGAAGTTCCACT
65 AATTTAAACATACAAACAATCGATTCAAAAGAAGAAGTTCCACT
* * **
38000219 ATAACAATCGATTTAAACATATAAACAATTGATTCAAAAGAAGTAGTATTACAACATGACAATTG
1 ATAACAATCGATTTAAACATATAAACAATTGATTCAAAAGAAGTAATATTACAACATAACAATCA
38000284 ATTTAAACATACAAACAATCGATTCAAAAGAA
66 ATTTAAACATACAAACAATCGATTCAAAAGAA
38000316 ACAGTATTCA
Statistics
Matches: 89, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
108 88 0.99
109 1 0.01
ACGTcount: A:0.51, C:0.13, G:0.08, T:0.27
Consensus pattern (108 bp):
ATAACAATCGATTTAAACATATAAACAATTGATTCAAAAGAAGTAATATTACAACATAACAATCA
ATTTAAACATACAAACAATCGATTCAAAAGAAGAAGTTCCACT
Found at i:38000322 original size:55 final size:55
Alignment explanation
Indices: 38000087--38000324 Score: 297
Period size: 55 Copynumber: 4.4 Consensus size: 55
38000077 CATAATAATT
* *
38000087 GATTC-AAAGAAGCAGTATTCTAACATAACAATCGATTTAAACATATAAATAATT
1 GATTCAAAAGAAGCAGTATTCTAACATAACAATCGATTTAAACATATAAACAATC
* * * *
38000141 GATTTAAAAGAAGTAATATTCTAACATAACAATCAATTTAAACATATAAACAATC
1 GATTCAAAAGAAGCAGTATTCTAACATAACAATCGATTTAAACATATAAACAATC
* * *
38000196 GATTCAAAAGAAGAAG--TTC-CACTATAACAATCGATTTAAACATATAAACAATT
1 GATTCAAAAGAAGCAGTATTCTAAC-ATAACAATCGATTTAAACATATAAACAATC
* * * *
38000249 GATTCAAAAGAAGTAGTATTAC-AACATGACAATTGATTTAAACATACAAACAATC
1 GATTCAAAAGAAGCAGTATT-CTAACATAACAATCGATTTAAACATATAAACAATC
*
38000304 GATTCAAAAGAAACAGTATTC
1 GATTCAAAAGAAGCAGTATTC
38000325 ACAGGCTATC
Statistics
Matches: 159, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
52 2 0.01
53 46 0.29
54 5 0.03
55 103 0.65
56 3 0.02
ACGTcount: A:0.50, C:0.14, G:0.09, T:0.27
Consensus pattern (55 bp):
GATTCAAAAGAAGCAGTATTCTAACATAACAATCGATTTAAACATATAAACAATC
Found at i:38001159 original size:19 final size:19
Alignment explanation
Indices: 38001113--38001153 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
38001103 AAAATAAAAT
* *
38001113 AATTTAAAATAATTTTTAA
1 AATTAAAAATAATTTATAA
38001132 AATTAAAAAT-ATTTATAA
1 AATTAAAAATAATTTATAA
38001150 AATT
1 AATT
38001154 CCAAAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
AATTAAAAATAATTTATAA
Found at i:38002657 original size:20 final size:18
Alignment explanation
Indices: 38002609--38002661 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 18
38002599 TATTGCTGGC
*
38002609 ATTAGTAAATAAATT-AAA
1 ATTA-TAAAAAAATTAAAA
38002627 ATTATAAAAAAATTAAAA
1 ATTATAAAAAAATTAAAA
38002645 ATTATATATAAAAATTA
1 ATTATA-A-AAAAATTA
38002662 TAATTCGAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
17 9 0.29
18 13 0.42
19 1 0.03
20 8 0.26
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (18 bp):
ATTATAAAAAAATTAAAA
Found at i:38006158 original size:18 final size:17
Alignment explanation
Indices: 38006120--38006167 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
38006110 GTATTTTGAT
* **
38006120 TTTTAAATAATATAATC
1 TTTTAAATATTATAAAA
38006137 TTTTCAAATATTATAAAA
1 TTTT-AAATATTATAAAA
38006155 TTTTAAATTATTA
1 TTTTAAA-TATTA
38006168 AAATGATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 7 0.27
18 19 0.73
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (17 bp):
TTTTAAATATTATAAAA
Found at i:38007882 original size:21 final size:21
Alignment explanation
Indices: 38007838--38007882 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
38007828 GTATTTAAAA
*
38007838 TTAATATCTAAACCCTAAATT
1 TTAATATCTAAACCCTAAACT
*
38007859 TTAA-ATCTTAAACCCTAAGCT
1 TTAATATC-TAAACCCTAAACT
38007880 TTA
1 TTA
38007883 TAAATTTGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.40, C:0.20, G:0.02, T:0.38
Consensus pattern (21 bp):
TTAATATCTAAACCCTAAACT
Found at i:38010192 original size:17 final size:18
Alignment explanation
Indices: 38010162--38010199 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
38010152 AAAAATAAAA
*
38010162 TTTTTTGTTCAAATAATT
1 TTTTTTGTTAAAATAATT
*
38010180 TTTTTTG-TAAAATTATT
1 TTTTTTGTTAAAATAATT
38010197 TTT
1 TTT
38010200 CGAAAAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (18 bp):
TTTTTTGTTAAAATAATT
Found at i:38011809 original size:41 final size:41
Alignment explanation
Indices: 38011715--38011887 Score: 224
Period size: 41 Copynumber: 4.3 Consensus size: 41
38011705 TTGATGATTA
* ** *
38011715 CTGAATTGTACATACATGCTTATGCTTGTACTTCAATA-CC
1 CTGAATTGCACATACATGCCCATGTTTGTACTTCAATACCC
* *
38011755 CTGAATTGCACATACGTGCCCATGTTTGTACTTCGATACCC
1 CTGAATTGCACATACATGCCCATGTTTGTACTTCAATACCC
38011796 CTGAATTGCACATACATGCCCATGTTTGTACTTCAATACCC
1 CTGAATTGCACATACATGCCCATGTTTGTACTTCAATACCC
* * * ***
38011837 CTGAATTGCACATACGTGCCCCTATTTGTACTTCGGCACCC
1 CTGAATTGCACATACATGCCCATGTTTGTACTTCAATACCC
38011878 CTGAA-TGCAC
1 CTGAATTGCAC
38011888 TTTAGTGCCC
Statistics
Matches: 118, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
40 37 0.31
41 81 0.69
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (41 bp):
CTGAATTGCACATACATGCCCATGTTTGTACTTCAATACCC
Found at i:38011887 original size:81 final size:81
Alignment explanation
Indices: 38011715--38011887 Score: 258
Period size: 82 Copynumber: 2.1 Consensus size: 81
38011705 TTGATGATTA
* ** *
38011715 CTGAATTGTACATACATGCTTATGCTTGTACTTCAATACCCTGAATTGCACATACGTGCCCATGT
1 CTGAATTGCACATACATGCCCATGCTTGTACTTCAATACCCTGAATTGCACATACGTGCCCATAT
*
38011780 TTGTACTTCGATACCC
66 TTGTACTTCGACACCC
* *
38011796 CTGAATTGCACATACATGCCCATGTTTGTACTTCAATACCCCTGAATTGCACATACGTGCCCCTA
1 CTGAATTGCACATACATGCCCATGCTTGTACTTCAATA-CCCTGAATTGCACATACGTGCCCATA
*
38011861 TTTGTACTTCGGCACCC
65 TTTGTACTTCGACACCC
38011878 CTGAA-TGCAC
1 CTGAATTGCAC
38011888 TTTAGTGCCC
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
81 39 0.47
82 44 0.53
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (81 bp):
CTGAATTGCACATACATGCCCATGCTTGTACTTCAATACCCTGAATTGCACATACGTGCCCATAT
TTGTACTTCGACACCC
Found at i:38017369 original size:38 final size:38
Alignment explanation
Indices: 38017314--38017386 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
38017304 ACCCAAGACC
38017314 CTGTACCCCCGCCTGTCCTCCAAATCCAATCCTTTACA
1 CTGTACCCCCGCCTGTCCTCCAAATCCAATCCTTTACA
*
38017352 CTGTCCCCCCGCCTGTCCTCCAAATCCAATCCTTT
1 CTGTACCCCCGCCTGTCCTCCAAATCCAATCCTTT
38017387 TGATCTGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.18, C:0.47, G:0.08, T:0.27
Consensus pattern (38 bp):
CTGTACCCCCGCCTGTCCTCCAAATCCAATCCTTTACA
Found at i:38019296 original size:42 final size:42
Alignment explanation
Indices: 38019250--38019337 Score: 122
Period size: 42 Copynumber: 2.1 Consensus size: 42
38019240 TAGCGACGTT
* ** * *
38019250 TTTTTTACAAACGCCCCTAAAGATTATGATCTTTAGCAGCGC
1 TTTTTTACAAACGCCACTAAAGACCATGACCTTTAGCAGCAC
*
38019292 TTTTTTACAAACGCCACTAAAGACCATGACCTTTAGCGGCAC
1 TTTTTTACAAACGCCACTAAAGACCATGACCTTTAGCAGCAC
38019334 TTTT
1 TTTT
38019338 CCAAAAAAGC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (42 bp):
TTTTTTACAAACGCCACTAAAGACCATGACCTTTAGCAGCAC
Found at i:38026301 original size:40 final size:40
Alignment explanation
Indices: 38026217--38026400 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
38026207 TTGAATGCTG
* * * *
38026217 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
38026256 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
38026297 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
38026337 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
38026377 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
38026401 GTATGAGTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:38026354 original size:80 final size:81
Alignment explanation
Indices: 38026217--38026397 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
38026207 TTGAATGCTG
* *
38026217 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
38026281 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
38026297 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
38026358 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
38026377 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
38026398 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:38028058 original size:93 final size:92
Alignment explanation
Indices: 38027899--38028069 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 92
38027889 GCCCATAAGT
* * * *
38027899 GAACTCAGACTCAACTCAACGAGCTCGGCGTTCGCATCTACAAGTGAACTCGGACTCCACTGAAC
1 GAACTCAGACTCAACTCAACGAGCTCGGCATTCGCATCCACAAGTGAACTCGGACTCAACTCAAC
38027964 GAGCTCGGATGCCTAGTTACATCTCTC
66 GAGCTCGGATGCCTAGTTACATCTCTC
* * *
38027991 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGG-CATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
*
38028056 CGAGTTCGGATGCC
65 CGAGCTCGGATGCC
38028070 CAAATATCCT
Statistics
Matches: 70, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
92 26 0.37
93 44 0.63
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCAGACTCAACTCAACGAGCTCGGCATTCGCATCCACAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTC
Found at i:38028065 original size:46 final size:45
Alignment explanation
Indices: 38027891--38028064 Score: 172
Period size: 45 Copynumber: 3.8 Consensus size: 45
38027881 TGTAACCCGC
* *
38027891 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
* * * * *
38027936 CTACAAGTGAACTCGGACTCCACTGAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** *
38027982 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
38028029 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
38028065 ATGCCCAAAT
Statistics
Matches: 101, Mismatches: 21, Indels: 13
0.75 0.16 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 31 0.31
46 31 0.31
47 30 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:38028150 original size:40 final size:40
Alignment explanation
Indices: 38028095--38028174 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
38028085 CATGTCACTT
38028095 GTATCCTAATCCATTCCTAAGATTCAACGGGACCTTTTTC
1 GTATCCTAATCCATTCCTAAGATTCAACGGGACCTTTTTC
* * *
38028135 GTATCCTAATCCATTCTTAAGGTTCAACGGGGCCTTTTTC
1 GTATCCTAATCCATTCCTAAGATTCAACGGGACCTTTTTC
38028175 CCAATCATGT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (40 bp):
GTATCCTAATCCATTCCTAAGATTCAACGGGACCTTTTTC
Found at i:38030137 original size:7 final size:7
Alignment explanation
Indices: 38030091--38030118 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
38030081 CCCCAGTCCT
38030091 TAAACCC
1 TAAACCC
38030098 TAAACCC
1 TAAACCC
38030105 TAAACCC
1 TAAACCC
38030112 TAAACCC
1 TAAACCC
38030119 ATAATTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.43, G:0.00, T:0.14
Consensus pattern (7 bp):
TAAACCC
Found at i:38030342 original size:22 final size:22
Alignment explanation
Indices: 38030312--38030361 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
38030302 AAAATATAAA
* *
38030312 CTAAA-CCCTAAACTCTTAATC
1 CTAAATCCCTAAACCCTAAATC
* *
38030333 CTTAATCCCTAGACCCTAAATC
1 CTAAATCCCTAAACCCTAAATC
38030355 CTAAATC
1 CTAAATC
38030362 ATAAAATATA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.36, C:0.34, G:0.02, T:0.28
Consensus pattern (22 bp):
CTAAATCCCTAAACCCTAAATC
Found at i:38030421 original size:15 final size:15
Alignment explanation
Indices: 38030378--38030431 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
38030368 TATAAACTCT
* *
38030378 TAAT-CCTAGACCCC
1 TAATCCCTAAACCCA
38030392 TAA-CCCTTAAA-CCA
1 TAATCCC-TAAACCCA
38030406 TAATCCCTAAACCCA
1 TAATCCCTAAACCCA
*
38030421 TAATCCATAAA
1 TAATCCCTAAA
38030432 ACTTAAAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
14 14 0.42
15 19 0.58
ACGTcount: A:0.41, C:0.35, G:0.02, T:0.22
Consensus pattern (15 bp):
TAATCCCTAAACCCA
Found at i:38030428 original size:22 final size:21
Alignment explanation
Indices: 38030389--38030430 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
38030379 AATCCTAGAC
*
38030389 CCCTAACCCTTAAACCATAAT
1 CCCTAACCCATAAACCATAAT
*
38030410 CCCTAAACCCATAATCCATAA
1 CCCT-AACCCATAAACCATAA
38030431 AACTTAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.40, C:0.38, G:0.00, T:0.21
Consensus pattern (21 bp):
CCCTAACCCATAAACCATAAT
Found at i:38030498 original size:308 final size:308
Alignment explanation
Indices: 38030093--38030880 Score: 1403
Period size: 308 Copynumber: 2.6 Consensus size: 308
38030083 CCAGTCCTTA
* * * * ** *
38030093 AACCC-TAAACCCTAAACCCTAAACCCATAATTCATAAACCTTAAAATAGTAACTCATAAACATT
1 AACCCTTAAACCATAATCCCTAAACCCATAATCCATAAAACTTAAAATAGTAACTTGTAAACCTT
* * * * *
38030157 AAACCCTTAACTAAAT-ACC---GT-A-AAACC-TAAACTATAACGATAATTAATTCAATATTTT
66 AAACCCTTAACCATATGCCCTAAATCATAAACCTTAAACTATAATGATAATTAATTCAATATTTT
*
38030215 AAAATTAATATTATCTCTTTTACAATTATATAAGAAAATATTTAACATATAAATTAAAAAACAAT
131 AAAATTAATACTATCTCTTTTACAATTATATAAGAAAATATTTAACATATAAATTAAAAAACAAT
38030280 TACTCATATACCAAAAATCTTTAAAATATAAACTAAACCCTAAACTCTTAATCCTTAATCCCTAG
196 TACTCATATACCAAAAATCTTTAAAATATAAACTAAACCCTAAACTCTTAATCCTTAATCCCTAG
38030345 ACCCTAAATCCTAAATCATAAAATATAAACTCTTAATCCTAGACCCCT
261 ACCCTAAATCCTAAATCATAAAATATAAACTCTTAATCCTAGACCCCT
38030393 AACCCTTAAACCATAATCCCTAAACCCATAATCCATAAAACTTAAAATAGTAACTTGTAAACCTT
1 AACCCTTAAACCATAATCCCTAAACCCATAATCCATAAAACTTAAAATAGTAACTTGTAAACCTT
38030458 AAACCCTTAACCATATGCCCTAAATCATAAACCTTAAACTATAATGATAATTAATTCAATATTTT
66 AAACCCTTAACCATATGCCCTAAATCATAAACCTTAAACTATAATGATAATTAATTCAATATTTT
38030523 AAAATTAATACTATCTCTTTTACAATTATATAAGAAAATATTTAACATATAAATTAAAAAACAAT
131 AAAATTAATACTATCTCTTTTACAATTATATAAGAAAATATTTAACATATAAATTAAAAAACAAT
38030588 TACTCATATACCAAAAATCTTTAAAATATAAACTAAACCCTAAACTCTTAATCCTTAATCCCTAG
196 TACTCATATACCAAAAATCTTTAAAATATAAACTAAACCCTAAACTCTTAATCCTTAATCCCTAG
38030653 ACCCTAAATCCTAAATCATAAAATATAAACTCTTAATCCTAGACCCCT
261 ACCCTAAATCCTAAATCATAAAATATAAACTCTTAATCCTAGACCCCT
38030701 AACCCTTAAACCATAATCCCTAAACCCATAATCCATAAAACTTAAAATAGTAACTTGTAAACCTT
1 AACCCTTAAACCATAATCCCTAAACCCATAATCCATAAAACTTAAAATAGTAACTTGTAAACCTT
38030766 AAACCCTTAACCATATGCCCTAAATCATAAACCTTAAACTATAATGATAATTAATTCAATATTTT
66 AAACCCTTAACCATATGCCCTAAATCATAAACCTTAAACTATAATGATAATTAATTCAATATTTT
38030831 AAAATTAATACTATCTCTTTTACAATTATATAAGAAAATATTTAACATAT
131 AAAATTAATACTATCTCTTTTACAATTATATAAGAAAATATTTAACATAT
38030881 GATGTACATC
Statistics
Matches: 467, Mismatches: 13, Indels: 8
0.96 0.03 0.02
Matches are distributed among these distances:
300 5 0.01
301 66 0.14
302 2 0.00
305 1 0.00
306 1 0.00
307 5 0.01
308 387 0.83
ACGTcount: A:0.46, C:0.21, G:0.02, T:0.31
Consensus pattern (308 bp):
AACCCTTAAACCATAATCCCTAAACCCATAATCCATAAAACTTAAAATAGTAACTTGTAAACCTT
AAACCCTTAACCATATGCCCTAAATCATAAACCTTAAACTATAATGATAATTAATTCAATATTTT
AAAATTAATACTATCTCTTTTACAATTATATAAGAAAATATTTAACATATAAATTAAAAAACAAT
TACTCATATACCAAAAATCTTTAAAATATAAACTAAACCCTAAACTCTTAATCCTTAATCCCTAG
ACCCTAAATCCTAAATCATAAAATATAAACTCTTAATCCTAGACCCCT
Found at i:38030650 original size:22 final size:22
Alignment explanation
Indices: 38030620--38030669 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
38030610 AAAATATAAA
* *
38030620 CTAAA-CCCTAAACTCTTAATC
1 CTAAATCCCTAAACCCTAAATC
* *
38030641 CTTAATCCCTAGACCCTAAATC
1 CTAAATCCCTAAACCCTAAATC
38030663 CTAAATC
1 CTAAATC
38030670 ATAAAATATA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.36, C:0.34, G:0.02, T:0.28
Consensus pattern (22 bp):
CTAAATCCCTAAACCCTAAATC
Found at i:38030729 original size:15 final size:15
Alignment explanation
Indices: 38030686--38030739 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
38030676 TATAAACTCT
* *
38030686 TAAT-CCTAGACCCC
1 TAATCCCTAAACCCA
38030700 TAA-CCCTTAAA-CCA
1 TAATCCC-TAAACCCA
38030714 TAATCCCTAAACCCA
1 TAATCCCTAAACCCA
*
38030729 TAATCCATAAA
1 TAATCCCTAAA
38030740 ACTTAAAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
14 14 0.42
15 19 0.58
ACGTcount: A:0.41, C:0.35, G:0.02, T:0.22
Consensus pattern (15 bp):
TAATCCCTAAACCCA
Found at i:38030736 original size:22 final size:21
Alignment explanation
Indices: 38030697--38030738 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
38030687 AATCCTAGAC
*
38030697 CCCTAACCCTTAAACCATAAT
1 CCCTAACCCATAAACCATAAT
*
38030718 CCCTAAACCCATAATCCATAA
1 CCCT-AACCCATAAACCATAA
38030739 AACTTAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.40, C:0.38, G:0.00, T:0.21
Consensus pattern (21 bp):
CCCTAACCCATAAACCATAAT
Found at i:38030980 original size:24 final size:24
Alignment explanation
Indices: 38030937--38031001 Score: 57
Period size: 23 Copynumber: 2.8 Consensus size: 24
38030927 AGAGGTTATA
38030937 GTTTAGG-GTTTAAGAT-TTTTTAAG
1 GTTTAGGAGTTT-AG-TGTTTTTAAG
38030961 GTTTAGGAGTTTAGTG-TTTTAAG
1 GTTTAGGAGTTTAGTGTTTTTAAG
* * *
38030984 GATTA-TAGATTAGTGTTT
1 GTTTAGGAGTTTAGTGTTT
38031002 ATGATTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
22 8 0.23
23 14 0.40
24 9 0.26
25 4 0.11
ACGTcount: A:0.25, C:0.00, G:0.26, T:0.49
Consensus pattern (24 bp):
GTTTAGGAGTTTAGTGTTTTTAAG
Found at i:38031127 original size:40 final size:41
Alignment explanation
Indices: 38031043--38031201 Score: 173
Period size: 40 Copynumber: 3.9 Consensus size: 41
38031033 GTTATATGAC
* * * * *
38031043 TTTTAGAGGCGTTTTATCGAAAGCGCCGCTAATGCT-TCGAT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCT-GGT
* *
38031084 TTTTAGTGGCG-TTTACCAAAAGCACCGCTATTGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGGT
*
38031124 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCT-GT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGGT
***
38031164 TTTTAGCGGCGTTTTTGGTAAAA-CGCCGCTATTGCTCT
1 TTTTAGCGGCG-TTTTACCAAAAGCGCCGCTATTGCTCT
38031202 ATGTTTTACA
Statistics
Matches: 103, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
40 60 0.58
41 43 0.42
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.36
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGGT
Found at i:38031746 original size:13 final size:13
Alignment explanation
Indices: 38031728--38031783 Score: 73
Period size: 13 Copynumber: 4.5 Consensus size: 13
38031718 AAATTTGATT
38031728 TATTTAGTGATAA
1 TATTTAGTGATAA
*
38031741 TATTTA--GA-AT
1 TATTTAGTGATAA
*
38031751 TATTTTGTGATAA
1 TATTTAGTGATAA
38031764 TATTTAGTGATAA
1 TATTTAGTGATAA
38031777 TATTTAG
1 TATTTAG
38031784 GAAAAATCTA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
10 6 0.17
11 2 0.06
12 2 0.06
13 26 0.72
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:38031754 original size:23 final size:23
Alignment explanation
Indices: 38031727--38031770 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
38031717 TAAATTTGAT
38031727 TTATTTAGTGATAATATTTAGAA
1 TTATTTAGTGATAATATTTAGAA
*
38031750 TTATTTTGTGATAATATTTAG
1 TTATTTAGTGATAATATTTAG
38031771 TGATAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (23 bp):
TTATTTAGTGATAATATTTAGAA
Found at i:38032486 original size:19 final size:19
Alignment explanation
Indices: 38032462--38032499 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
38032452 TGGCAAGAGT
38032462 TAGTTTGTAGGTCATACCG
1 TAGTTTGTAGGTCATACCG
*
38032481 TAGTTTGTAGGTCGTACCG
1 TAGTTTGTAGGTCATACCG
38032500 AGATTGACTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.18, C:0.16, G:0.29, T:0.37
Consensus pattern (19 bp):
TAGTTTGTAGGTCATACCG
Found at i:38038155 original size:13 final size:13
Alignment explanation
Indices: 38038137--38038161 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
38038127 GAATGGGGGA
38038137 AATTAGGGTTAAG
1 AATTAGGGTTAAG
38038150 AATTAGGGTTAA
1 AATTAGGGTTAA
38038162 ATGGTGGCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.28, T:0.32
Consensus pattern (13 bp):
AATTAGGGTTAAG
Found at i:38067546 original size:47 final size:46
Alignment explanation
Indices: 38067477--38067569 Score: 168
Period size: 47 Copynumber: 2.0 Consensus size: 46
38067467 TCTTTAGACA
*
38067477 CGACTTTTGAATTTTTCTCCACAGTTGAATTAGATCGGAAGGCGGC
1 CGACTTTTGAATTTTTCTCCACAGTTGAATTAGATCGGAAGACGGC
38067523 NCGACTTTTGAATTTTTCTCCACAGTTGAATTAGATCGGAAGACGGC
1 -CGACTTTTGAATTTTTCTCCACAGTTGAATTAGATCGGAAGACGGC
38067570 TTTTTTTTCA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.32
Consensus pattern (46 bp):
CGACTTTTGAATTTTTCTCCACAGTTGAATTAGATCGGAAGACGGC
Found at i:38072332 original size:43 final size:42
Alignment explanation
Indices: 38072252--38072365 Score: 147
Period size: 43 Copynumber: 2.7 Consensus size: 42
38072242 ACTAAGATTA
*
38072252 CGTGTAAGACCATATCTAGGATATGGCATCGATACGAGACTT
1 CGTGTAAGACCATAGCTAGGATATGGCATCGATACGAGACTT
* * * *
38072294 CGTGTAAGACCATAGCTGGGCTATTGGCATTGATACGAGATTT
1 CGTGTAAGACCATAGCTAGGATA-TGGCATCGATACGAGACTT
* * *
38072337 CATGTAAGACCATATCTAGGATATAGCAT
1 CGTGTAAGACCATAGCTAGGATATGGCAT
38072366 TGGCATGGTA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
42 25 0.41
43 36 0.59
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (42 bp):
CGTGTAAGACCATAGCTAGGATATGGCATCGATACGAGACTT
Found at i:38077553 original size:24 final size:24
Alignment explanation
Indices: 38077524--38077614 Score: 128
Period size: 24 Copynumber: 3.8 Consensus size: 24
38077514 ATTGACTTCG
*
38077524 GCACTATGTGTGCGAATTTGAATA
1 GCACTATGTGTGCGAATTTGTATA
* *
38077548 GCACTATGTGTGCGAAATTGTATG
1 GCACTATGTGTGCGAATTTGTATA
* *
38077572 GCACTATGTGTGCGGACTTGTATA
1 GCACTATGTGTGCGAATTTGTATA
*
38077596 GCACTATGTGTGCGGATTT
1 GCACTATGTGTGCGAATTT
38077615 AAATGTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 60 1.00
ACGTcount: A:0.23, C:0.14, G:0.29, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGAATTTGTATA
Found at i:38080507 original size:23 final size:23
Alignment explanation
Indices: 38080481--38080527 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
38080471 ATTGACCCTG
38080481 GTTCTACTCATTCATATGTATGT
1 GTTCTACTCATTCATATGTATGT
38080504 GTTCTACTCATTCATATGTATGT
1 GTTCTACTCATTCATATGTATGT
38080527 G
1 G
38080528 AGACTTTAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.21, C:0.17, G:0.15, T:0.47
Consensus pattern (23 bp):
GTTCTACTCATTCATATGTATGT
Found at i:38085671 original size:24 final size:24
Alignment explanation
Indices: 38085583--38085669 Score: 122
Period size: 24 Copynumber: 3.6 Consensus size: 24
38085573 AATTGACTTC
*
38085583 GGCACTATGTGTGC-AAATTTGAAT
1 GGCACTATGTGTGCGAAA-TTGTAT
38085607 GGCACTATGTGTGCGAAATTGTAT
1 GGCACTATGTGTGCGAAATTGTAT
* *
38085631 GGCACTATGTGTGCGGACTTGTAT
1 GGCACTATGTGTGCGAAATTGTAT
*
38085655 AGCACTATGTGTGCG
1 GGCACTATGTGTGCG
38085670 GATTTAAATG
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
24 55 0.95
25 3 0.05
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.32
Consensus pattern (24 bp):
GGCACTATGTGTGCGAAATTGTAT
Found at i:38093429 original size:10 final size:10
Alignment explanation
Indices: 38093414--38093463 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
38093404 TAATTTTAGG
38093414 ATTTAT-TTT
1 ATTTATCTTT
38093423 CATTTATCTTT
1 -ATTTATCTTT
*
38093434 AATTATCTTT
1 ATTTATCTTT
38093444 ATTTAT-TTGT
1 ATTTATCTT-T
*
38093454 AATTATCTTT
1 ATTTATCTTT
38093464 TAGAATTTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 2 0.06
10 27 0.79
11 5 0.15
ACGTcount: A:0.24, C:0.08, G:0.02, T:0.66
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:38093447 original size:20 final size:20
Alignment explanation
Indices: 38093424--38093463 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
38093414 ATTTATTTTC
38093424 ATTTATCTT-TAATTATCTTT
1 ATTTAT-TTGTAATTATCTTT
38093444 ATTTATTTGTAATTATCTTT
1 ATTTATTTGTAATTATCTTT
38093464 TAGAATTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.25, C:0.07, G:0.03, T:0.65
Consensus pattern (20 bp):
ATTTATTTGTAATTATCTTT
Found at i:38097213 original size:15 final size:15
Alignment explanation
Indices: 38097195--38097279 Score: 68
Period size: 15 Copynumber: 5.4 Consensus size: 15
38097185 ACTTTTCTTA
38097195 ATTTTATTATTTATT
1 ATTTTATTATTTATT
38097210 ATTTTATT-TCATT-TT
1 ATTTTATTAT--TTATT
*
38097225 ATTTTATTA-GTATT
1 ATTTTATTATTTATT
*
38097239 TTTTTATTTTATTTTACTTT
1 ATTTTA--TTA-TTTA--TT
38097259 ATTTTATTATTTATT
1 ATTTTATTATTTATT
38097274 ATTTTA
1 ATTTTA
38097280 ATTTTGGATA
Statistics
Matches: 56, Mismatches: 4, Indels: 20
0.70 0.05 0.25
Matches are distributed among these distances:
13 1 0.02
14 8 0.14
15 26 0.46
16 5 0.09
17 4 0.07
18 5 0.09
20 7 0.12
ACGTcount: A:0.24, C:0.02, G:0.01, T:0.73
Consensus pattern (15 bp):
ATTTTATTATTTATT
Found at i:38097213 original size:34 final size:33
Alignment explanation
Indices: 38097174--38097278 Score: 103
Period size: 34 Copynumber: 3.2 Consensus size: 33
38097164 AACCCAACCT
38097174 TTATTTTTTTTACTTTTCTTAATTTTATTATTTA
1 TTATTTTTTTTACTTTTCTT-ATTTTATTATTTA
* * *
38097208 TTATTTTATTT-C-ATT-TTATTTTATTA-GTA
1 TTATTTTTTTTACTTTTCTTATTTTATTATTTA
*
38097237 TTTTTTTATTTTA-TTTTACTTTATTTTATTATTTA
1 TTATTTT-TTTTACTTTT-C-TTATTTTATTATTTA
38097272 TTATTTT
1 TTATTTT
38097279 AATTTTGGAT
Statistics
Matches: 56, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
29 8 0.14
30 12 0.21
31 4 0.07
32 2 0.04
33 1 0.02
34 21 0.38
35 8 0.14
ACGTcount: A:0.21, C:0.04, G:0.01, T:0.74
Consensus pattern (33 bp):
TTATTTTTTTTACTTTTCTTATTTTATTATTTA
Found at i:38097240 original size:11 final size:9
Alignment explanation
Indices: 38097173--38097279 Score: 75
Period size: 10 Copynumber: 12.0 Consensus size: 9
38097163 CAACCCAACC
*
38097173 TTTATTTTT
1 TTTATTTTA
*
38097182 TTTACTTTTC
1 TTTA-TTTTA
*
38097192 TTAATTTTA
1 TTTATTTTA
38097201 -TTA-TTTA
1 TTTATTTTA
38097208 -TTATTTTA
1 TTTATTTTA
38097216 TTTCATTTTA
1 TTT-ATTTTA
*
38097226 TTTTATTAGTA
1 -TTTATT-TTA
38097237 TTT-TTTTA
1 TTTATTTTA
38097245 TTTTATTTTA
1 -TTTATTTTA
38097255 CTTTATTTTA
1 -TTTATTTTA
38097265 -TTA-TTTA
1 TTTATTTTA
38097272 -TTATTTTA
1 TTTATTTTA
38097280 ATTTTGGATA
Statistics
Matches: 82, Mismatches: 7, Indels: 19
0.76 0.06 0.18
Matches are distributed among these distances:
7 14 0.17
8 15 0.18
9 15 0.18
10 33 0.40
11 5 0.06
ACGTcount: A:0.21, C:0.04, G:0.01, T:0.74
Consensus pattern (9 bp):
TTTATTTTA
Found at i:38097245 original size:29 final size:30
Alignment explanation
Indices: 38097195--38097270 Score: 95
Period size: 29 Copynumber: 2.6 Consensus size: 30
38097185 ACTTTTCTTA
*
38097195 ATTTTATTATTTATTATTTTATTTCATTTT
1 ATTTTATTATGTATTATTTTATTTCATTTT
* *
38097225 ATTTTATTA-GTATTTTTTTATTTTATTTT
1 ATTTTATTATGTATTATTTTATTTCATTTT
*
38097254 ACTTTATT-T-TATTATTT
1 ATTTTATTATGTATTATTT
38097271 ATTATTTTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
28 7 0.17
29 24 0.60
30 9 0.22
ACGTcount: A:0.22, C:0.03, G:0.01, T:0.74
Consensus pattern (30 bp):
ATTTTATTATGTATTATTTTATTTCATTTT
Found at i:38098554 original size:96 final size:96
Alignment explanation
Indices: 38098390--38098570 Score: 299
Period size: 96 Copynumber: 1.9 Consensus size: 96
38098380 GTATTAATTT
38098390 TTAAGAATGTGTTGGGCTGAGTAACCAGGGTGAGGTGCTTGGCTGTCATCTCTCTTCACGTCAAA
1 TTAAGAATGTGTTGGGCTGAGTAACCAGGGTGAGGTGCTTGGCTGTCATCTCTCTTCACGTCAAA
* *
38098455 AGGTTCGATATGTTCTTAAGAAAAATAAAAA
66 AGGTTCAATATGTTCCTAAGAAAAATAAAAA
** * *
38098486 TTAAGAATGTGTTGGGCTGAGTAACTGGGGTGGGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAA
1 TTAAGAATGTGTTGGGCTGAGTAACCAGGGTGAGGTGCTTGGCTGTCATCTCTCTTCACGTCAAA
*
38098551 AGGTTCAATATTTTCCTAAG
66 AGGTTCAATATGTTCCTAAG
38098571 TGAAGGTAAA
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
96 78 1.00
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.32
Consensus pattern (96 bp):
TTAAGAATGTGTTGGGCTGAGTAACCAGGGTGAGGTGCTTGGCTGTCATCTCTCTTCACGTCAAA
AGGTTCAATATGTTCCTAAGAAAAATAAAAA
Found at i:38099276 original size:10 final size:10
Alignment explanation
Indices: 38099261--38099310 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
38099251 TAATTTTAGG
38099261 ATTTAT-TTT
1 ATTTATCTTT
38099270 CATTTATCTTT
1 -ATTTATCTTT
*
38099281 AATTATCTTT
1 ATTTATCTTT
38099291 ATTTAT-TTGT
1 ATTTATCTT-T
*
38099301 AATTATCTTT
1 ATTTATCTTT
38099311 TAGAATTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 2 0.06
10 27 0.79
11 5 0.15
ACGTcount: A:0.24, C:0.08, G:0.02, T:0.66
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:38099294 original size:20 final size:20
Alignment explanation
Indices: 38099271--38099310 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
38099261 ATTTATTTTC
38099271 ATTTATCTT-TAATTATCTTT
1 ATTTAT-TTGTAATTATCTTT
38099291 ATTTATTTGTAATTATCTTT
1 ATTTATTTGTAATTATCTTT
38099311 TAGAATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.25, C:0.07, G:0.03, T:0.65
Consensus pattern (20 bp):
ATTTATTTGTAATTATCTTT
Found at i:38111305 original size:32 final size:33
Alignment explanation
Indices: 38111234--38111307 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 33
38111224 TACTTTTGTG
* *
38111234 GGCCCACACGCCCAGATTGGCCTTTGCCCATAT
1 GGCCCACACACCCAGATTGGCCTTAGCCCATAT
*
38111267 GGCCCACACACCCA-ACTTGGCC-TAGCCCGTAT
1 GGCCCACACACCCAGA-TTGGCCTTAGCCCATAT
38111299 GGCCCACAC
1 GGCCCACAC
38111308 GGCCACATTC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
32 18 0.49
33 19 0.51
ACGTcount: A:0.20, C:0.43, G:0.20, T:0.16
Consensus pattern (33 bp):
GGCCCACACACCCAGATTGGCCTTAGCCCATAT
Found at i:38113971 original size:33 final size:34
Alignment explanation
Indices: 38113908--38113980 Score: 87
Period size: 33 Copynumber: 2.1 Consensus size: 34
38113898 CATGACTGAT
* * *
38113908 ACTGATACTGATGCTGAGATGGGTTAAGGCCCAA-
1 ACTG-TACTGATACTGAAAGGGGTTAAGGCCCAAG
38113942 ACTGTACTGATACTGAAAGGGGCTT-AGGCCCAAG
1 ACTGTACTGATACTGAAAGGGG-TTAAGGCCCAAG
38113976 ACTGT
1 ACTGT
38113981 TTGACTATGC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
33 23 0.68
34 11 0.32
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (34 bp):
ACTGTACTGATACTGAAAGGGGTTAAGGCCCAAG
Found at i:38119122 original size:29 final size:29
Alignment explanation
Indices: 38119066--38119122 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
38119056 CACCTTGACA
* * *
38119066 CGAATTCTCAATCAACAAGTTTTTCATCG
1 CGAACTCTCAATCAACAAGTTCTCCATCG
38119095 CGAACTCTCAA-CGAACAAGTTCTCCATC
1 CGAACTCTCAATC-AACAAGTTCTCCATC
38119123 TCTTCCATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 1 0.04
29 23 0.96
ACGTcount: A:0.32, C:0.30, G:0.11, T:0.28
Consensus pattern (29 bp):
CGAACTCTCAATCAACAAGTTCTCCATCG
Found at i:38124687 original size:9 final size:9
Alignment explanation
Indices: 38124675--38124711 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
38124665 CTCCAAATTT
38124675 TTATTTTTA
1 TTATTTTTA
38124684 TTATTTTTTA
1 TTA-TTTTTA
38124694 TTATTTTTA
1 TTATTTTTA
38124703 TT-TTTTTA
1 TTATTTTTA
38124711 T
1 T
38124712 AAATTTCGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 7 0.26
9 11 0.41
10 9 0.33
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTATTTTTA
Found at i:38124693 original size:16 final size:16
Alignment explanation
Indices: 38124672--38124708 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
38124662 ATACTCCAAA
38124672 TTTTTATT-TTTATTAT
1 TTTTTATTATTT-TTAT
38124688 TTTTTATTATTTTTAT
1 TTTTTATTATTTTTAT
38124704 TTTTT
1 TTTTT
38124709 TATAAATTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 17 0.85
17 3 0.15
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTTATTATTTTTAT
Found at i:38125468 original size:18 final size:18
Alignment explanation
Indices: 38125438--38125486 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
38125428 ATATCTAATA
*
38125438 AGTAATCAGTAACGGTAGC
1 AGTAAT-AGTAACGGTAAC
38125457 AGTAATAGTAACGGTAAC
1 AGTAATAGTAACGGTAAC
*
38125475 AGTAACAGTAAC
1 AGTAATAGTAAC
38125487 AGTATTCAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
18 22 0.79
19 6 0.21
ACGTcount: A:0.43, C:0.14, G:0.22, T:0.20
Consensus pattern (18 bp):
AGTAATAGTAACGGTAAC
Found at i:38125473 original size:6 final size:6
Alignment explanation
Indices: 38125438--38125490 Score: 61
Period size: 6 Copynumber: 8.7 Consensus size: 6
38125428 ATATCTAATA
* * * *
38125438 AGTAATC AGTAAC GGTAGC AGTAAT AGTAAC GGTAAC AGTAAC AGTAAC
1 AGTAA-C AGTAAC AGTAAC AGTAAC AGTAAC AGTAAC AGTAAC AGTAAC
38125487 AGTA
1 AGTA
38125491 TTCAACACAC
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
6 33 0.87
7 5 0.13
ACGTcount: A:0.43, C:0.13, G:0.23, T:0.21
Consensus pattern (6 bp):
AGTAAC
Found at i:38125521 original size:45 final size:45
Alignment explanation
Indices: 38125471--38125580 Score: 168
Period size: 45 Copynumber: 2.4 Consensus size: 45
38125461 ATAGTAACGG
*
38125471 TAACAGTAACAGTAACAGTATTCAACACACAAAGTG-CTGAATCTA
1 TAACAGTAACAGTAACAGTATTCAACACACAAAGTGTC-GAATCGA
* * *
38125516 TAACAGTAACGGTAACAGTATTCGACACACAAAGTGTCGAATCGG
1 TAACAGTAACAGTAACAGTATTCAACACACAAAGTGTCGAATCGA
38125561 TAACAGTAACAGTAACAGTA
1 TAACAGTAACAGTAACAGTA
38125581 ACAATAGTCG
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
45 58 0.98
46 1 0.02
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.21
Consensus pattern (45 bp):
TAACAGTAACAGTAACAGTATTCAACACACAAAGTGTCGAATCGA
Found at i:38126993 original size:20 final size:20
Alignment explanation
Indices: 38126970--38127024 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 20
38126960 TTATTTTTAA
38126970 TAATAATAATAATCATAATT
1 TAATAATAATAATCATAATT
*
38126990 TAATAAT-ATAAATTATAATT
1 TAATAATAAT-AATCATAATT
38127010 TAATAGAATAATAAT
1 TAAT--AATAATAAT
38127025 AAATAATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 2 0.07
20 20 0.67
22 6 0.20
23 2 0.07
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (20 bp):
TAATAATAATAATCATAATT
Found at i:38128490 original size:28 final size:28
Alignment explanation
Indices: 38128458--38128512 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
38128448 TAATTATTTT
*
38128458 ATTTTCTCACACGAGCTATGATATTTGA
1 ATTTTCTCACACAAGCTATGATATTTGA
* *
38128486 ATTTTCTCACACAAGTTGTGATATTTG
1 ATTTTCTCACACAAGCTATGATATTTG
38128513 GGTTGCTCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.42
Consensus pattern (28 bp):
ATTTTCTCACACAAGCTATGATATTTGA
Found at i:38134672 original size:48 final size:47
Alignment explanation
Indices: 38134614--38135623 Score: 1453
Period size: 48 Copynumber: 21.0 Consensus size: 47
38134604 ATATACACAC
* *
38134614 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATT-GGCTTTACCACATATACAT
*
38134662 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATT-GGCTTTACCACATATACAT
* * *
38134710 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCAT-TGGCTTTACCACATATACAT
*
38134758 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCA-TTGGCTTTACCACATATACAT
* * *
38134806 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCAT-TGGCTTTACCACATATACAT
*
38134854 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCA-TTGGCTTTACCACATATACAT
* * *
38134902 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCAT-TGGCTTTACCACATATACAT
*
38134950 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCA-TTGGCTTTACCACATATACAT
* * *
38134998 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCAT-TGGCTTTACCACATATACAT
*
38135046 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCA-TTGGCTTTACCACATATACAT
* * *
38135094 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCAT-TGGCTTTACCACATATACAT
*
38135142 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCA-TTGGCTTTACCACATATACAT
* * *
38135190 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCAT-TGGCTTTACCACATATACAT
*
38135238 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCA-TTGGCTTTACCACATATACAT
* * *
38135286 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCAT-TGGCTTTACCACATATACAT
*
38135334 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCA-TTGGCTTTACCACATATACAT
* * *
38135382 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCAT-TGGCTTTACCACATATACAT
*
38135430 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCA-TTGGCTTTACCACATATACAT
* * *
38135478 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCAT-TGGCTTTACCACATATACAT
*
38135526 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCA-TTGGCTTTACCACATATACAT
* * *
38135574 ATCTCATACATATTTCACCTTAGCCATACGGATTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCAT-TGGCTTTACCACATATACAT
38135622 AT
1 AT
38135624 ATTTGTCTTG
Statistics
Matches: 864, Mismatches: 79, Indels: 38
0.88 0.08 0.04
Matches are distributed among these distances:
47 9 0.01
48 845 0.98
49 10 0.01
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.37
Consensus pattern (47 bp):
ATCTCATACATATTTCACATTAGCCATTGGCTTTACCACATATACAT
Found at i:38134733 original size:96 final size:96
Alignment explanation
Indices: 38134614--38135623 Score: 1914
Period size: 96 Copynumber: 10.5 Consensus size: 96
38134604 ATATACACAC
* * * * *
38134614 ATCTCCTACATATTTCACATTAGCCAT-TCGGCTTTACCAAATATACATATCTCATACATATTTC
1 ATCTCATATATATTTCACCTTAGCCATAT-GGCTTTACCACATATATATATCTCATACATATTTC
*
38134678 ACACTAGCCATTCGGCTTTACCACATATACAT
65 ACACTAGCCATTTGGCTTTACCACATATACAT
38134710 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATATATCTCATACATATTTCA
1 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATATATCTCATACATATTTCA
38134775 CACTAGCCATTTGGCTTTACCACATATACAT
66 CACTAGCCATTTGGCTTTACCACATATACAT
38134806 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATATATCTCATACATATTTCA
1 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATATATCTCATACATATTTCA
38134871 CACTAGCCATTTGGCTTTACCACATATACAT
66 CACTAGCCATTTGGCTTTACCACATATACAT
38134902 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATATATCTCATACATATTTCA
1 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATATATCTCATACATATTTCA
38134967 CACTAGCCATTTGGCTTTACCACATATACAT
66 CACTAGCCATTTGGCTTTACCACATATACAT
38134998 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATATATCTCATACATATTTCA
1 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATATATCTCATACATATTTCA
38135063 CACTAGCCATTTGGCTTTACCACATATACAT
66 CACTAGCCATTTGGCTTTACCACATATACAT
38135094 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATATATCTCATACATATTTCA
1 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATATATCTCATACATATTTCA
38135159 CACTAGCCATTTGGCTTTACCACATATACAT
66 CACTAGCCATTTGGCTTTACCACATATACAT
38135190 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATATATCTCATACATATTTCA
1 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATATATCTCATACATATTTCA
38135255 CACTAGCCATTTGGCTTTACCACATATACAT
66 CACTAGCCATTTGGCTTTACCACATATACAT
38135286 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATATATCTCATACATATTTCA
1 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATATATCTCATACATATTTCA
38135351 CACTAGCCATTTGGCTTTACCACATATACAT
66 CACTAGCCATTTGGCTTTACCACATATACAT
38135382 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATATATCTCATACATATTTCA
1 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATATATCTCATACATATTTCA
38135447 CACTAGCCATTTGGCTTTACCACATATACAT
66 CACTAGCCATTTGGCTTTACCACATATACAT
38135478 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATATATCTCATACATATTTCA
1 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATATATCTCATACATATTTCA
38135543 CACTAGCCATTTGGCTTTACCACATATACAT
66 CACTAGCCATTTGGCTTTACCACATATACAT
* * * *
38135574 ATCTCATACATATTTCACCTTAGCCATACGGATTTACCACATATACATAT
1 ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATATAT
38135624 ATTTGTCTTG
Statistics
Matches: 903, Mismatches: 10, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
96 902 1.00
97 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.37
Consensus pattern (96 bp):
ATCTCATATATATTTCACCTTAGCCATATGGCTTTACCACATATATATATCTCATACATATTTCA
CACTAGCCATTTGGCTTTACCACATATACAT
Found at i:38146115 original size:13 final size:13
Alignment explanation
Indices: 38146083--38146197 Score: 50
Period size: 13 Copynumber: 8.8 Consensus size: 13
38146073 ATACTAGATT
38146083 TAAAATATATATA
1 TAAAATATATATA
*
38146096 TACAATATATAT-
1 TAAAATATATATA
38146108 TAAAAATAGTAATAATA
1 T-AAAATA-T-AT-ATA
38146125 TAAAA-ATA-ACTA
1 TAAAATATATA-TA
*
38146137 -ATAATA-ACTATA
1 TAAAATATA-TATA
*
38146149 TATAAATATATACA
1 TA-AAATATATATA
*
38146163 T---ATATGTAT-
1 TAAAATATATATA
38146172 TAAAATATATATA
1 TAAAATATATATA
38146185 TTAAAGATATATA
1 -TAAA-ATATATA
38146198 CATATATAAT
Statistics
Matches: 76, Mismatches: 8, Indels: 34
0.64 0.07 0.29
Matches are distributed among these distances:
9 1 0.01
10 6 0.08
11 5 0.07
12 13 0.17
13 19 0.25
14 14 0.18
15 11 0.14
16 6 0.08
17 1 0.01
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37
Consensus pattern (13 bp):
TAAAATATATATA
Found at i:38146138 original size:18 final size:17
Alignment explanation
Indices: 38146095--38146142 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
38146085 AAATATATAT
38146095 ATAC-AATATATATTAAAA
1 ATACTAATA-ATA-TAAAA
*
38146113 ATAGTAATAATATAAAA
1 ATACTAATAATATAAAA
38146130 ATAACTAATAATA
1 AT-ACTAATAATA
38146143 ACTATATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
17 7 0.27
18 15 0.58
19 4 0.15
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.31
Consensus pattern (17 bp):
ATACTAATAATATAAAA
Found at i:38146179 original size:14 final size:15
Alignment explanation
Indices: 38146162--38146197 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
38146152 AAATATATAC
*
38146162 ATATATGTATTAAA-
1 ATATATATATTAAAG
38146176 ATATATATATTAAAG
1 ATATATATATTAAAG
38146191 ATATATA
1 ATATATA
38146198 CATATATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.42
Consensus pattern (15 bp):
ATATATATATTAAAG
Done.