Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56482370
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1659275 characters in sequence are not A, C, G, or T
File 13 of 172
Found at i:4125440 original size:21 final size:22
Alignment explanation
Indices: 4125396--4125441 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
4125386 GGTCTCAATG
* *
4125396 TTCACTTTGGTACATGAGTTTT
1 TTCAATTTGATACATGAGTTTT
* *
4125418 TTCAATTTGATACTTGATTTTT
1 TTCAATTTGATACATGAGTTTT
4125440 TT
1 TT
4125442 TGTCATGTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.20, C:0.11, G:0.13, T:0.57
Consensus pattern (22 bp):
TTCAATTTGATACATGAGTTTT
Found at i:4127196 original size:18 final size:19
Alignment explanation
Indices: 4127173--4127211 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
4127163 TTTTGATTAA
4127173 TTCGG-TTGCCTAAAATAT
1 TTCGGTTTGCCTAAAATAT
**
4127191 TTCGGTTTGGTTAAAATAT
1 TTCGGTTTGCCTAAAATAT
4127210 TT
1 TT
4127212 GAAAAAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.26, C:0.10, G:0.18, T:0.46
Consensus pattern (19 bp):
TTCGGTTTGCCTAAAATAT
Found at i:4130584 original size:22 final size:22
Alignment explanation
Indices: 4130526--4130584 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 22
4130516 GAATGGTATC
4130526 TACAAATCAAATCTCTAAGATT
1 TACAAATCAAATCTCTAAGATT
*
4130548 TACAAAATCATATCTCCTAAGA-T
1 TAC-AAATCAAATCT-CTAAGATT
*
4130571 TACATATCAAATCT
1 TACAAATCAAATCT
4130585 ACGATTGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 12 0.38
23 14 0.44
24 6 0.19
ACGTcount: A:0.44, C:0.20, G:0.03, T:0.32
Consensus pattern (22 bp):
TACAAATCAAATCTCTAAGATT
Found at i:4141707 original size:16 final size:16
Alignment explanation
Indices: 4141674--4141707 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4141664 GGACACTAGC
*
4141674 AAAAGATTTGTTAAAA
1 AAAAGATTTGTCAAAA
4141690 AAAAGATTTGTCAGAAA
1 AAAAGATTTGTCA-AAA
4141707 A
1 A
4141708 GCCACCCAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.56, C:0.03, G:0.15, T:0.26
Consensus pattern (16 bp):
AAAAGATTTGTCAAAA
Found at i:4145271 original size:13 final size:13
Alignment explanation
Indices: 4145237--4145271 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
4145227 TGCTGTGAAA
*
4145237 AAGTGCTATTGAG
1 AAGTGCTTTTGAG
*
4145250 AAGTACTTTTGAG
1 AAGTGCTTTTGAG
4145263 AAGTGCTTT
1 AAGTGCTTT
4145272 GGAAAAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.29, C:0.09, G:0.26, T:0.37
Consensus pattern (13 bp):
AAGTGCTTTTGAG
Found at i:4145561 original size:21 final size:19
Alignment explanation
Indices: 4145505--4145565 Score: 70
Period size: 19 Copynumber: 3.1 Consensus size: 19
4145495 TAATTATTTA
4145505 TTAAATT-TAATTAGAATAT
1 TTAAATTATAATTA-AATAT
* *
4145524 ATAAATTATATTTAAATAT
1 TTAAATTATAATTAAATAT
4145543 TTAAATATAATAATTAAATAT
1 TTAAAT-T-ATAATTAAATAT
4145564 TT
1 TT
4145566 GTAATTAGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
19 16 0.46
20 6 0.17
21 13 0.37
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (19 bp):
TTAAATTATAATTAAATAT
Found at i:4146412 original size:17 final size:17
Alignment explanation
Indices: 4146390--4146422 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
4146380 TTAAATAATT
4146390 ACAAATCAAAAGTTATA
1 ACAAATCAAAAGTTATA
4146407 ACAAATCAAAAGTTAT
1 ACAAATCAAAAGTTAT
4146423 GGTACTTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.58, C:0.12, G:0.06, T:0.24
Consensus pattern (17 bp):
ACAAATCAAAAGTTATA
Found at i:4147242 original size:42 final size:42
Alignment explanation
Indices: 4147130--4147261 Score: 106
Period size: 42 Copynumber: 3.1 Consensus size: 42
4147120 GTGTCTTTGC
* * * *
4147130 CCGTGTAACTCACTGACTTAGGT-CACACGGCCGTATCGTAGG
1 CCGTGTAACTCACTGACTTA-ATACACACGACCGTATCGCAGA
** * * *
4147172 TTGTGTAACTCTCTGAC-TAATTAGACACGACCGTATTGCAGA
1 CCGTGTAACTCACTGACTTAA-TACACACGACCGTATCGCAGA
* * * * *
4147214 CCGTGTGACTCACTGACTTAATACACACGAGCGTGTCGAAGG
1 CCGTGTAACTCACTGACTTAATACACACGACCGTATCGCAGA
4147256 CCGTGT
1 CCGTGT
4147262 CTTAGATCAT
Statistics
Matches: 68, Mismatches: 19, Indels: 6
0.73 0.20 0.06
Matches are distributed among these distances:
41 3 0.04
42 62 0.91
43 3 0.04
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (42 bp):
CCGTGTAACTCACTGACTTAATACACACGACCGTATCGCAGA
Found at i:4148558 original size:15 final size:16
Alignment explanation
Indices: 4148538--4148570 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
4148528 TATATATTTT
4148538 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
4148553 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
4148570 T
1 T
4148571 ATAGCCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:4148674 original size:20 final size:22
Alignment explanation
Indices: 4148630--4148675 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
4148620 TTTTAGTATC
* *
4148630 ATTTTTATTTGTTTTAATATTT
1 ATTTTTATGTGTTTTAATATAT
4148652 ATTTTTATGT-TTTTAA-ATAT
1 ATTTTTATGTGTTTTAATATAT
4148672 ATTT
1 ATTT
4148676 GATTTATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.32
21 6 0.27
22 9 0.41
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (22 bp):
ATTTTTATGTGTTTTAATATAT
Found at i:4148692 original size:26 final size:24
Alignment explanation
Indices: 4148646--4148693 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
4148636 ATTTGTTTTA
*
4148646 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
4148670 ATATTTGATTTATTATATTTTTAA
1 ATATTT-ATTT-TTATATTTTTAA
4148694 TTTTTTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.29
25 4 0.19
26 11 0.52
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:4150898 original size:52 final size:52
Alignment explanation
Indices: 4150834--4150945 Score: 172
Period size: 52 Copynumber: 2.2 Consensus size: 52
4150824 CTGCTGAACC
* * *
4150834 CAAAAAGGATGAGGAGGAAATTCTTAAGACTTTCAGTAAAGTCGAACAGAAA
1 CAAAAAGAATGAGAAGGAAATTCTTAAGACTTTCAATAAAGTCGAACAGAAA
*
4150886 CAAAAAGAATGAGAAGGAAATTCTTGAGACTTTCAATAAAGTCGAACAGAAA
1 CAAAAAGAATGAGAAGGAAATTCTTAAGACTTTCAATAAAGTCGAACAGAAA
4150938 -ATAAAAGA
1 CA-AAAAGA
4150946 TTAAGTTAAG
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
51 1 0.02
52 54 0.98
ACGTcount: A:0.50, C:0.11, G:0.21, T:0.19
Consensus pattern (52 bp):
CAAAAAGAATGAGAAGGAAATTCTTAAGACTTTCAATAAAGTCGAACAGAAA
Found at i:4152415 original size:61 final size:61
Alignment explanation
Indices: 4152332--4152449 Score: 184
Period size: 61 Copynumber: 1.9 Consensus size: 61
4152322 ACTAAGCACG
4152332 AAGTGCTTACTCCGTTTCCTTTTTCCCTGTTTTGTAGTGTTAAGAGCTCGAAGGTCGGATA
1 AAGTGCTTACTCCGTTTCCTTTTTCCCTGTTTTGTAGTGTTAAGAGCTCGAAGGTCGGATA
* * * *
4152393 AAGTGCTTAC-CTTGTTTTCTTTTTCCCTGTTTTGTAGTGTTAAGAGCTGGGAGGTCG
1 AAGTGCTTACTC-CGTTTCCTTTTTCCCTGTTTTGTAGTGTTAAGAGCTCGAAGGTCG
4152450 AATTTGGTCG
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
60 1 0.02
61 51 0.98
ACGTcount: A:0.16, C:0.18, G:0.25, T:0.42
Consensus pattern (61 bp):
AAGTGCTTACTCCGTTTCCTTTTTCCCTGTTTTGTAGTGTTAAGAGCTCGAAGGTCGGATA
Found at i:4157096 original size:31 final size:31
Alignment explanation
Indices: 4157061--4157130 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 31
4157051 CTTGTCACTT
* * *
4157061 GTAGCCGAAGCTATCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTATTCACTAATCAA
* * * *
4157092 GTAGCTGGAGCTACCATTTTTCACTAATCAA
1 GTAGCCGAAGCTACCACTATTCACTAATCAA
4157123 GTAGCCGA
1 GTAGCCGA
4157131 TGATCAGGTA
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTATTCACTAATCAA
Found at i:4157231 original size:50 final size:50
Alignment explanation
Indices: 4157138--4157421 Score: 433
Period size: 50 Copynumber: 5.5 Consensus size: 50
4157128 CGATGATCAG
* *
4157138 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
* * *
4157189 GTAGCTGAAGCTATCACTTATCAATTTCATTTGTCCTTGATCAAATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
4157239 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
4157289 GTAGCCGAAGCTATCACTTATCACTTATCACTTTCACTTATCCTTGATCAAATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCA---T---TTGTCCTTGATCAGATAAGT
4157346 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
4157396 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
4157422 GTTGCCATGG
Statistics
Matches: 214, Mismatches: 12, Indels: 15
0.89 0.05 0.06
Matches are distributed among these distances:
50 140 0.65
51 25 0.12
53 1 0.00
54 1 0.00
56 3 0.01
57 44 0.21
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:4157312 original size:7 final size:7
Alignment explanation
Indices: 4157300--4157330 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
4157290 TAGCCGAAGC
4157300 TATCACT
1 TATCACT
4157307 TATCACT
1 TATCACT
4157314 TATCACT
1 TATCACT
4157321 T-TCACT
1 TATCACT
4157327 TATC
1 TATC
4157331 CTTGATCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.45
Consensus pattern (7 bp):
TATCACT
Found at i:4157327 original size:13 final size:14
Alignment explanation
Indices: 4157300--4157330 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
4157290 TAGCCGAAGC
4157300 TATCACTTATCACT
1 TATCACTTATCACT
4157314 TATCACTT-TCACT
1 TATCACTTATCACT
4157327 TATC
1 TATC
4157331 CTTGATCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.45
Consensus pattern (14 bp):
TATCACTTATCACT
Found at i:4157343 original size:107 final size:104
Alignment explanation
Indices: 4157138--4157421 Score: 459
Period size: 107 Copynumber: 2.7 Consensus size: 104
4157128 CGATGATCAG
* * *
4157138 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGTGTAGCTGAAGCTAT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
4157203 CACTTAT--C--AATTTCATTTGTCCTTGATCAAATAAGT
65 CACTTATCACTTAATTTCACTTATCCTTGATCAAATAAGT
4157239 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATC
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATC
4157304 ACTTATCACTTATCACTTTCACTTATCCTTGATCAAATAAGT
66 ACTTATCACTTA--A-TTTCACTTATCCTTGATCAAATAAGT
4157346 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATC
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATC
4157411 ACTTATCACTT
66 ACTTATCACTT
4157422 GTTGCCATGG
Statistics
Matches: 171, Mismatches: 5, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
100 44 0.26
101 24 0.14
102 1 0.01
104 1 0.01
106 1 0.01
107 100 0.58
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.36
Consensus pattern (104 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATC
ACTTATCACTTAATTTCACTTATCCTTGATCAAATAAGT
Found at i:4174363 original size:31 final size:31
Alignment explanation
Indices: 4174340--4174402 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
4174330 TCTTTCAATA
4174340 TTCTCTCAAATTTCTCTCAAATCTCTCAAAT
1 TTCTCTCAAATTTCTCTCAAATCTCTCAAAT
*
4174371 TTCTCTTAAATTTCTCTCAAATTTCTCTCAAA
1 TTCTCTCAAATTTCTCTCAAA--TCTCTCAAA
4174403 GCTCTCGTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 20 0.69
33 9 0.31
ACGTcount: A:0.29, C:0.27, G:0.00, T:0.44
Consensus pattern (31 bp):
TTCTCTCAAATTTCTCTCAAATCTCTCAAAT
Found at i:4174366 original size:20 final size:20
Alignment explanation
Indices: 4174341--4174408 Score: 100
Period size: 20 Copynumber: 3.3 Consensus size: 20
4174331 CTTTCAATAT
4174341 TCTCTCAAATTTCTCTCAAA
1 TCTCTCAAATTTCTCTCAAA
*
4174361 TCTCTCAAATTTCTCTTAAA
1 TCTCTCAAATTTCTCTCAAA
4174381 TTTCTCTCAAATTTCTCTCAAA
1 --TCTCTCAAATTTCTCTCAAA
*
4174403 GCTCTC
1 TCTCTC
4174409 GTTAATTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
20 24 0.56
22 19 0.44
ACGTcount: A:0.26, C:0.29, G:0.01, T:0.43
Consensus pattern (20 bp):
TCTCTCAAATTTCTCTCAAA
Found at i:4174408 original size:11 final size:11
Alignment explanation
Indices: 4174340--4174402 Score: 103
Period size: 11 Copynumber: 5.9 Consensus size: 11
4174330 TCTTTCAATA
4174340 TTCTCTCAAAT
1 TTCTCTCAAAT
4174351 TTCTCTCAAA-
1 TTCTCTCAAAT
4174361 -TCTCTCAAAT
1 TTCTCTCAAAT
*
4174371 TTCTCTTAAAT
1 TTCTCTCAAAT
4174382 TTCTCTCAAAT
1 TTCTCTCAAAT
4174393 TTCTCTCAAA
1 TTCTCTCAAA
4174403 GCTCTCGTTA
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
9 9 0.19
11 39 0.81
ACGTcount: A:0.29, C:0.27, G:0.00, T:0.44
Consensus pattern (11 bp):
TTCTCTCAAAT
Found at i:4180079 original size:125 final size:126
Alignment explanation
Indices: 4179834--4180367 Score: 737
Period size: 127 Copynumber: 4.2 Consensus size: 126
4179824 GCCAAATAGG
* * * * *
4179834 AACTACTGTAGCAAAAGAGTGTCCACGTGGGAGCTTCTTTCAGTATTTTTGCTGACATTGCATCT
1 AACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAATGCATCC
* ** * * *
4179899 TGCTTGATTCGATTTTGACACTCTTTGCTCAGAAACATCTTCTCAAAATTATTTTTTTAGA
66 TACTTGAAGCGTTTTTGACACTATTTGCTCAGAAACATCTTCTCAAAATTATTTTTTCAGA
* * * *
4179960 AACTATTATAGCAAAATAGCGT-CACGTGGGAGCTTCTTTCAGTACTTTTGCTAACAATACATCC
1 AACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAATGCATCC
* * *
4180024 TACTTGAAGCGTTTTTGACACTATTTACTCAGAAAAATCTTCTCAAAATTATTTTTTCAAA
66 TACTTGAAGCGTTTTTGACACTATTTGCTCAGAAACATCTTCTCAAAATTATTTTTTCAGA
*
4180085 AACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAATACTTTTGCTGACAATGCATCC
1 AACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAATGCATCC
* * *
4180150 TACTTGAAGTGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCAAAATTATTTTTTTTAGA
66 TACTTGAAGCGTTTTTGACACTATTTGCTCAGAAACATCTTCTCAAAATTA-TTTTTTCAGA
* * * * *
4180212 AAATACTATAGCAAAAGAGCATCTATGCGGGAGCTTCTTTCAGTACTTTTGCTGACAATGCATCC
1 AACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAATGCATCC
* * * * *
4180277 TGCTTGAAGTGTTTTTGACACTATTGGCTCAGAAACGTTTTCTCAAAATTATTTTTTCCAGA
66 TACTTGAAGCGTTTTTGACACTATTTGCTCAGAAACATCTTCTCAAAATTATTTTTT-CAGA
* *
4180339 AACTACTGTAACAAAAGAGCGTCCACGTG
1 AACTACTATAGCAAAAGAGCGTCCACGTG
4180368 AGATCTTTTT
Statistics
Matches: 359, Mismatches: 46, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
125 109 0.30
126 110 0.31
127 140 0.39
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (126 bp):
AACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAATGCATCC
TACTTGAAGCGTTTTTGACACTATTTGCTCAGAAACATCTTCTCAAAATTATTTTTTCAGA
Found at i:4180585 original size:96 final size:96
Alignment explanation
Indices: 4180476--4180649 Score: 285
Period size: 96 Copynumber: 1.8 Consensus size: 96
4180466 CTTAAAAGCC
* * * *
4180476 TAATCTAAATTTTTTAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTAATTTATTTTAT
1 TAATCTAAATTTTTAAAATTTATAATTAATTTAATCAAGAAACCCTAAACCCTAATTTATTTAAT
4180541 TTTTTCCTTAAAAACCATAAACATTAAACCA
66 TTTTTCCTTAAAAACCATAAACATTAAACCA
* * *
4180572 TAATCTAATTTTTTAAAATTTATAATTAATTTAATTAAGAAACCTTAAACCCTAATTTATTTAAT
1 TAATCTAAATTTTTAAAATTTATAATTAATTTAATCAAGAAACCCTAAACCCTAATTTATTTAAT
4180637 TTTTTCCTTAAAA
66 TTTTTCCTTAAAA
4180650 CCCTCAAATT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 71 1.00
ACGTcount: A:0.41, C:0.14, G:0.01, T:0.44
Consensus pattern (96 bp):
TAATCTAAATTTTTAAAATTTATAATTAATTTAATCAAGAAACCCTAAACCCTAATTTATTTAAT
TTTTTCCTTAAAAACCATAAACATTAAACCA
Found at i:4183739 original size:51 final size:51
Alignment explanation
Indices: 4183661--4183772 Score: 170
Period size: 51 Copynumber: 2.2 Consensus size: 51
4183651 TATCCGTATA
* *
4183661 AAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGTAATTATTCTGGATG
1 AAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGTAATAATTCCGGATG
* * *
4183712 AAATATGAAGCTCTTGTTGAAGTTAGAGCAACAAGGTAATAATTCCGGATG
1 AAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGTAATAATTCCGGATG
*
4183763 AAGTATGAAG
1 AAATATGAAG
4183773 TAAGTTTGAG
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.39, C:0.11, G:0.22, T:0.28
Consensus pattern (51 bp):
AAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGTAATAATTCCGGATG
Found at i:4184505 original size:11 final size:11
Alignment explanation
Indices: 4184491--4184516 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
4184481 TTATACATTT
4184491 ATGTGACATGA
1 ATGTGACATGA
4184502 ATGTGACATGA
1 ATGTGACATGA
4184513 ATGT
1 ATGT
4184517 TTAAATGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (11 bp):
ATGTGACATGA
Found at i:4185227 original size:16 final size:15
Alignment explanation
Indices: 4185208--4185237 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
4185198 GGAATTGTTT
4185208 TAAACTAAAATCTAAC
1 TAAACTAAAA-CTAAC
4185224 TAAACTAAAACTAA
1 TAAACTAAAACTAA
4185238 GAAGACGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.60, C:0.17, G:0.00, T:0.23
Consensus pattern (15 bp):
TAAACTAAAACTAAC
Found at i:4197181 original size:46 final size:45
Alignment explanation
Indices: 4197114--4197288 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 45
4197104 TGTACCCCGC
4197114 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTC-CAT
*
4197160 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GG-ATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCC-A--T
* *** * * * **
4197206 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACGCTCACAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCATTC-CAT
* *
4197253 CTATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
4197289 ATGCCCAAAT
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 66 0.62
47 29 0.27
48 1 0.01
49 2 0.02
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCCAT
Found at i:4197234 original size:93 final size:93
Alignment explanation
Indices: 4197122--4197293 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
4197112 GCCCATAAGT
* * * *
4197122 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACACTCACATCCATAAGTGAACTCGGACTCAACTCAA
4197187 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
4197215 GAACTCGGACTCAACTCAACGAGTTCAGACGCTCACATCTATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACACTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
4197280 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
4197294 CAAATATCCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACACTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:4197308 original size:46 final size:46
Alignment explanation
Indices: 4197165--4197308 Score: 139
Period size: 46 Copynumber: 3.1 Consensus size: 46
4197155 CGCATCCATA
* * * *
4197165 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--AATATCTC
* * * * * * *
4197213 --TCGAACTCGGACTCAACTCAACGAGTTCAGACGCTCACATCTATA
1 AGT-GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCTC
*
4197258 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCTC
4197304 AGTGA
1 AGTGA
4197309 CATGTCACTT
Statistics
Matches: 75, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
45 3 0.04
46 41 0.55
47 31 0.41
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCTC
Found at i:4199035 original size:42 final size:41
Alignment explanation
Indices: 4198915--4199035 Score: 125
Period size: 42 Copynumber: 2.9 Consensus size: 41
4198905 TATACAGTAC
* * * **
4198915 CAATACCATATCCTAGATATGGTTTTACATGTAATCTCATAT
1 CAATGCCATATCCCAGATATGGTCTTACA-CAAATCTCATAT
* * * *
4198957 CGATGCCATAGCCCAGCTATAGTCTTACACGAAATCTCATAT
1 CAATGCCATATCCCAGATATGGTCTTACAC-AAATCTCATAT
*
4198999 CAATGCCATATCCCAAATATGGTCTTACACACAATCT
1 CAATGCCATATCCCAGATATGGTCTTACACA-AATCT
4199036 TAGTAGCCCT
Statistics
Matches: 63, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
41 1 0.02
42 62 0.98
ACGTcount: A:0.33, C:0.26, G:0.11, T:0.31
Consensus pattern (41 bp):
CAATGCCATATCCCAGATATGGTCTTACACAAATCTCATAT
Found at i:4201155 original size:17 final size:17
Alignment explanation
Indices: 4201133--4201166 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
4201123 AAAAAGATTT
4201133 TTATTAAACTAAACTAA
1 TTATTAAACTAAACTAA
* *
4201150 TTATTAGACTAAGCTAA
1 TTATTAAACTAAACTAA
4201167 GATTGCACAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.12, G:0.06, T:0.35
Consensus pattern (17 bp):
TTATTAAACTAAACTAA
Found at i:4213891 original size:82 final size:81
Alignment explanation
Indices: 4213751--4213906 Score: 201
Period size: 83 Copynumber: 1.9 Consensus size: 81
4213741 GAACCAATGA
* * *
4213751 TCGTGATGTGATGAAGTAATAAATTAATCGTACCTAAAAGATTAACTATTATCACGAT-AAAAGG
1 TCGTGATGTGATAAAGTAATAAATTAATCGTACCTAAAAGACTAACTAATATCACGATAAAAAGG
4213815 CAAGCGCACTGATCTC
66 CAAGCGCACTGATCTC
* *
4213831 TCGTGATTGTGATAAAGTAATAAAATCTGATCGTACC-AGGAA-ACTAACTAATATCACGATAAA
1 TCGTGA-TGTGATAAAGTAAT-AAAT-TAATCGTACCTA-AAAGACTAACTAATATCACGATAAA
*
4213894 AAGGCAAGTGCAC
62 AAGGCAAGCGCAC
4213907 CTATCGAATA
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
80 6 0.09
81 13 0.20
82 21 0.32
83 25 0.38
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.26
Consensus pattern (81 bp):
TCGTGATGTGATAAAGTAATAAATTAATCGTACCTAAAAGACTAACTAATATCACGATAAAAAGG
CAAGCGCACTGATCTC
Found at i:4216862 original size:16 final size:17
Alignment explanation
Indices: 4216835--4216870 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
4216825 ATAAAAGGAC
4216835 AAAGAGAAATGAAAAGT
1 AAAGAGAAATGAAAAGT
*
4216852 AAAGA-AAATGAAAATT
1 AAAGAGAAATGAAAAGT
4216868 AAA
1 AAA
4216871 ATTAAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.14
Consensus pattern (17 bp):
AAAGAGAAATGAAAAGT
Found at i:4220718 original size:125 final size:125
Alignment explanation
Indices: 4220491--4220727 Score: 456
Period size: 125 Copynumber: 1.9 Consensus size: 125
4220481 GTAACGACCT
*
4220491 AAAATCCGTGGGCACCAGAAAAGTGTGTTATTGGGCCTCCGTCTTAGTGAAATAAGTTCGAAAAT
1 AAAAGCCGTGGGCACCAGAAAAGTGTGTTATTGGGCCTCCGTCTTAGTGAAATAAGTTCGAAAAT
4220556 AATTATTAAAAATATTTATGAGTCTAGTAGTGTGTTTAATTAGGTTTAATAATTATTAAC
66 AATTATTAAAAATATTTATGAGTCTAGTAGTGTGTTTAATTAGGTTTAATAATTATTAAC
*
4220616 AAAAGCCGTGGGCATCAGAAAAGTGTGTTATTGGGCCTCCGTCTTAGTGAAATAAGTTCGAAAAT
1 AAAAGCCGTGGGCACCAGAAAAGTGTGTTATTGGGCCTCCGTCTTAGTGAAATAAGTTCGAAAAT
4220681 AATTATTAAAAATATTTATGAGTCTAGTAGTGTGTTTAATTAGGTTT
66 AATTATTAAAAATATTTATGAGTCTAGTAGTGTGTTTAATTAGGTTT
4220728 TAATTAAGTA
Statistics
Matches: 110, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
125 110 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.35
Consensus pattern (125 bp):
AAAAGCCGTGGGCACCAGAAAAGTGTGTTATTGGGCCTCCGTCTTAGTGAAATAAGTTCGAAAAT
AATTATTAAAAATATTTATGAGTCTAGTAGTGTGTTTAATTAGGTTTAATAATTATTAAC
Found at i:4220941 original size:5 final size:5
Alignment explanation
Indices: 4220931--4220973 Score: 86
Period size: 5 Copynumber: 8.6 Consensus size: 5
4220921 AATAATTAAG
4220931 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TAT
4220974 TATATATATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:4221281 original size:158 final size:158
Alignment explanation
Indices: 4220988--4221310 Score: 619
Period size: 158 Copynumber: 2.0 Consensus size: 158
4220978 TATATAAAAG
4220988 AAACAAATAAGTTAAAAGAAAAGGAAATGAAAACGAAAACAAAGAAGAAACAGGGGAGAAAGAAG
1 AAAC-AATAAGTTAAAAGAAAAGGAAATGAAAACGAAAACAAAGAAGAAACAGGGGAGAAAGAAG
*
4221053 AAAGAAAAGGGGAAATAGGGTTTATGAAGCTTGGAGTTAATTGGTAAGCTCAATCAAGTCCTTTT
65 AAAGAAAAGGGGAAATAGGGTTTATGAAGCTTGGAGTTAATTGGTAAGCTCAATCAAATCCTTTT
4221118 CTCATAATTTTGATATTTTAGAAGTCTTA
130 CTCATAATTTTGATATTTTAGAAGTCTTA
*
4221147 AAACAATAAGTTAAAAGAAAAGGAAATGAAAACGAAAACAGAGAAGAAACAGGGGAGAAAGAAGA
1 AAACAATAAGTTAAAAGAAAAGGAAATGAAAACGAAAACAAAGAAGAAACAGGGGAGAAAGAAGA
4221212 AAGAAAAGGGGAAATAGGGTTTATGAAGCTTGGAGTTAATTGGTAAGCTCAATCAAATCCTTTTC
66 AAGAAAAGGGGAAATAGGGTTTATGAAGCTTGGAGTTAATTGGTAAGCTCAATCAAATCCTTTTC
4221277 TCATAATTTTGATATTTTAGAAGTCTTA
131 TCATAATTTTGATATTTTAGAAGTCTTA
4221305 AAACAA
1 AAACAA
4221311 GTTTTTGATG
Statistics
Matches: 162, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
158 158 0.98
159 4 0.02
ACGTcount: A:0.47, C:0.08, G:0.22, T:0.23
Consensus pattern (158 bp):
AAACAATAAGTTAAAAGAAAAGGAAATGAAAACGAAAACAAAGAAGAAACAGGGGAGAAAGAAGA
AAGAAAAGGGGAAATAGGGTTTATGAAGCTTGGAGTTAATTGGTAAGCTCAATCAAATCCTTTTC
TCATAATTTTGATATTTTAGAAGTCTTA
Found at i:4231039 original size:20 final size:20
Alignment explanation
Indices: 4231011--4231123 Score: 113
Period size: 20 Copynumber: 5.7 Consensus size: 20
4231001 AGATATGACA
*
4231011 CAAACAGAGGCACAAATGTG
1 CAAATAGAGGCACAAATGTG
4231031 CAAATAGAGGCACTAAA-GTG
1 CAAATAGAGGCAC-AAATGTG
* * **
4231051 CAAACAAAGGCATGAATGTG
1 CAAATAGAGGCACAAATGTG
*
4231071 CAAATAGAGGCACCGAA-GTG
1 CAAATAGAGGCA-CAAATGTG
*
4231091 CAAATAGAGGCACATATGTG
1 CAAATAGAGGCACAAATGTG
* *
4231111 CGACTAGAGGCAC
1 CAAATAGAGGCAC
4231124 GTTCAAAACA
Statistics
Matches: 77, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
19 4 0.05
20 67 0.87
21 6 0.08
ACGTcount: A:0.42, C:0.19, G:0.27, T:0.13
Consensus pattern (20 bp):
CAAATAGAGGCACAAATGTG
Found at i:4231055 original size:40 final size:40
Alignment explanation
Indices: 4231011--4231123 Score: 145
Period size: 40 Copynumber: 2.8 Consensus size: 40
4231001 AGATATGACA
*
4231011 CAAACAGAGGCACAAATGTGCAAATAGAGGCACTAAAGTG
1 CAAACAGAGGCACAAATGTGCAAATAGAGGCACCAAAGTG
* ** *
4231051 CAAACAAAGGCATGAATGTGCAAATAGAGGCACCGAAGTG
1 CAAACAGAGGCACAAATGTGCAAATAGAGGCACCAAAGTG
* * * *
4231091 CAAATAGAGGCACATATGTGCGACTAGAGGCAC
1 CAAACAGAGGCACAAATGTGCAAATAGAGGCAC
4231124 GTTCAAAACA
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.42, C:0.19, G:0.27, T:0.13
Consensus pattern (40 bp):
CAAACAGAGGCACAAATGTGCAAATAGAGGCACCAAAGTG
Found at i:4232979 original size:19 final size:20
Alignment explanation
Indices: 4232957--4233001 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
4232947 AGATAACAAA
4232957 ATATCTC-CAAAATAAGAAT
1 ATATCTCACAAAATAAGAAT
* *
4232976 ATATCTCACTAAATAATAAT
1 ATATCTCACAAAATAAGAAT
4232996 AT-TCTC
1 ATATCTC
4233002 TAACAAGTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.47, C:0.18, G:0.02, T:0.33
Consensus pattern (20 bp):
ATATCTCACAAAATAAGAAT
Found at i:4233194 original size:19 final size:19
Alignment explanation
Indices: 4233170--4233217 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
4233160 TAAAAATAAA
*
4233170 ATATCTCTAAAATAAAAAT
1 ATATCTCTAAAATAAAAAC
* *
4233189 ATATCTCGTTAAATAACAAC
1 ATATCTC-TAAAATAAAAAC
4233209 AT-TCTCTAA
1 ATATCTCTAA
4233218 TAACTACTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 2 0.08
19 11 0.46
20 11 0.46
ACGTcount: A:0.48, C:0.17, G:0.02, T:0.33
Consensus pattern (19 bp):
ATATCTCTAAAATAAAAAC
Found at i:4240391 original size:5 final size:5
Alignment explanation
Indices: 4240381--4240421 Score: 73
Period size: 5 Copynumber: 8.2 Consensus size: 5
4240371 GACTGGGGAG
*
4240381 AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA TAGAA A
1 AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA A
4240422 CCAACAGCCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (5 bp):
AAGAA
Found at i:4243340 original size:14 final size:14
Alignment explanation
Indices: 4243317--4243369 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
4243307 TTATTTATGG
*
4243317 TTTAAAGTTTAGTG-
1 TTTAGAGTTTAG-GA
*
4243331 TTTAGGGTTTAGGA
1 TTTAGAGTTTAGGA
*
4243345 TTTAGAGTTTAAGA
1 TTTAGAGTTTAGGA
*
4243359 TTTTGAGTTTA
1 TTTAGAGTTTA
4243370 AGGTTTAAGA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
13 1 0.03
14 32 0.97
ACGTcount: A:0.26, C:0.00, G:0.25, T:0.49
Consensus pattern (14 bp):
TTTAGAGTTTAGGA
Found at i:4243370 original size:14 final size:14
Alignment explanation
Indices: 4243331--4243376 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
4243321 AAGTTTAGTG
* *
4243331 TTTAGGGTTTAGGA
1 TTTAGAGTTTAAGA
4243345 TTTAGAGTTTAAGA
1 TTTAGAGTTTAAGA
* *
4243359 TTTTGAGTTTAAGG
1 TTTAGAGTTTAAGA
4243373 TTTA
1 TTTA
4243377 AGACTTAAGG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.48
Consensus pattern (14 bp):
TTTAGAGTTTAAGA
Found at i:4243412 original size:14 final size:14
Alignment explanation
Indices: 4243395--4243424 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
4243385 GGCTTAAAGA
*
4243395 TTAGGGCTTGGGGC
1 TTAGGGCCTGGGGC
4243409 TTAGGGCCTGGGGC
1 TTAGGGCCTGGGGC
4243423 TT
1 TT
4243425 TGGTTTTAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.17, G:0.47, T:0.30
Consensus pattern (14 bp):
TTAGGGCCTGGGGC
Found at i:4243457 original size:7 final size:7
Alignment explanation
Indices: 4243436--4243530 Score: 63
Period size: 7 Copynumber: 14.0 Consensus size: 7
4243426 GGTTTTAAGT
*
4243436 TTTAAGG
1 TTTAGGG
4243443 TTTA-GG
1 TTTAGGG
4243449 TTTAGGG
1 TTTAGGG
4243456 TTTA-GG
1 TTTAGGG
*
4243462 TCTAGGG
1 TTTAGGG
*
4243469 TTTA-GA
1 TTTAGGG
* * *
4243475 TATAAGA
1 TTTAGGG
4243482 TTTAAGGG
1 TTT-AGGG
*
4243490 -TTATGG
1 TTTAGGG
4243496 TTTAGGG
1 TTTAGGG
*
4243503 TTTAGAG
1 TTTAGGG
*
4243510 TTTAGAG
1 TTTAGGG
*
4243517 TTTAAGG
1 TTTAGGG
4243524 TTTAGGG
1 TTTAGGG
4243531 ATTGGCTGGA
Statistics
Matches: 70, Mismatches: 13, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
6 18 0.26
7 50 0.71
8 2 0.03
ACGTcount: A:0.24, C:0.01, G:0.33, T:0.42
Consensus pattern (7 bp):
TTTAGGG
Found at i:4243457 original size:13 final size:13
Alignment explanation
Indices: 4243436--4243529 Score: 73
Period size: 13 Copynumber: 7.0 Consensus size: 13
4243426 GGTTTTAAGT
4243436 TTTAAGGTTTAGG
1 TTTAAGGTTTAGG
*
4243449 TTTAGGGTTTAGG
1 TTTAAGGTTTAGG
* * *
4243462 TCTAGGGTTTAGA
1 TTTAAGGTTTAGG
* *
4243475 TATAAGATTTAAGG
1 TTTAAGGTTT-AGG
* *
4243489 GTTATGGTTTAGGG
1 TTTAAGGTTTA-GG
4243503 TTT-AGAGTTTAGAG
1 TTTAAG-GTTTAG-G
4243517 TTTAAGGTTTAGG
1 TTTAAGGTTTAGG
4243530 GATTGGCTGG
Statistics
Matches: 63, Mismatches: 13, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
13 34 0.54
14 27 0.43
15 2 0.03
ACGTcount: A:0.24, C:0.01, G:0.32, T:0.43
Consensus pattern (13 bp):
TTTAAGGTTTAGG
Found at i:4248624 original size:6 final size:6
Alignment explanation
Indices: 4248613--4248651 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
4248603 TATTAATCCT
* *
4248613 TTTGCC TTTGCC TTCGCC TTTGCC TTTGAC TTTGCC TTT
1 TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTT
4248652 TACCTTCTGC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.03, C:0.31, G:0.15, T:0.51
Consensus pattern (6 bp):
TTTGCC
Found at i:4258080 original size:38 final size:38
Alignment explanation
Indices: 4258037--4258111 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 38
4258027 TGCCGAGAGT
* *
4258037 CGTTCTATATACTTTGCGACAAAATAATAACATCACTA
1 CGTTCTATATACTTTGCGACAAAAGAACAACATCACTA
4258075 CGTTCTATATACTTTGCGACAAAAGAACAACATCACT
1 CGTTCTATATACTTTGCGACAAAAGAACAACATCACT
4258112 GAAGCACTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.29
Consensus pattern (38 bp):
CGTTCTATATACTTTGCGACAAAAGAACAACATCACTA
Found at i:4260653 original size:259 final size:259
Alignment explanation
Indices: 4260194--4260711 Score: 973
Period size: 259 Copynumber: 2.0 Consensus size: 259
4260184 CATTCCTCTA
* *
4260194 CGATGTCGACACTGCATGGCTCTCAACATGCCGCGTGAGCAACGAAGAGGCCATAACAGAGCACG
1 CGATGTCGACACTGCATGGCTCTCAACAGGCCGAGTGAGCAACGAAGAGGCCATAACAGAGCACG
4260259 AGCATCGTCCGTGTCAAGAGACAAAATGCATAGGCATCGAGAGACAAGGGCCTAAACCCTACTCT
66 AGCATCGTCCGTGTCAAGAGACAAAATGCATAGGCATCGAGAGACAAGGGCCTAAACCCTACTCT
* *
4260324 CAGAAATATTTTCTGCATCCGAAAGCACGAATGAGCACCAGTGCACCGACGAGGCCACACCGATT
131 CAAAAATATTTTCTGCATCCGAAAGCACGAACGAGCACCAGTGCACCGACGAGGCCACACCGATT
*
4260389 TAAGGGGGCACACTCGGGACACAGGGCACGATTGTGGTCCACCACGCACCCCAAAGGGCACGAG
196 TAAGGGGGCACACTCGGGACACAGGGCACGATTGTGGTCCACCACGCACCCCAAAGGGAACGAG
*
4260453 CGATGTCGACACTGCATGGCTCTCAATAGGCCGAGTGAGCAACGAAGAGGCCATAACAGAGCACG
1 CGATGTCGACACTGCATGGCTCTCAACAGGCCGAGTGAGCAACGAAGAGGCCATAACAGAGCACG
*
4260518 AGCATCGTCCGTGTCAAGAGACAAACTGCATAGGCATCGAGAGACAAGGGCCTAAACCCTACTCT
66 AGCATCGTCCGTGTCAAGAGACAAAATGCATAGGCATCGAGAGACAAGGGCCTAAACCCTACTCT
4260583 CAAAAATATTTTCTGCATCCGAAAGCACGAACGAGCACCAGTGCACCGACGAGGCCACACCGATT
131 CAAAAATATTTTCTGCATCCGAAAGCACGAACGAGCACCAGTGCACCGACGAGGCCACACCGATT
4260648 TAAGGGGGCACACTCGGGACACAGGGCACGATTGTGGTCCACCACGCACCCCAAAGGGAACGAG
196 TAAGGGGGCACACTCGGGACACAGGGCACGATTGTGGTCCACCACGCACCCCAAAGGGAACGAG
4260712 ATGGAGAAGG
Statistics
Matches: 252, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
259 252 1.00
ACGTcount: A:0.31, C:0.29, G:0.26, T:0.14
Consensus pattern (259 bp):
CGATGTCGACACTGCATGGCTCTCAACAGGCCGAGTGAGCAACGAAGAGGCCATAACAGAGCACG
AGCATCGTCCGTGTCAAGAGACAAAATGCATAGGCATCGAGAGACAAGGGCCTAAACCCTACTCT
CAAAAATATTTTCTGCATCCGAAAGCACGAACGAGCACCAGTGCACCGACGAGGCCACACCGATT
TAAGGGGGCACACTCGGGACACAGGGCACGATTGTGGTCCACCACGCACCCCAAAGGGAACGAG
Found at i:4261715 original size:42 final size:42
Alignment explanation
Indices: 4261579--4262441 Score: 428
Period size: 42 Copynumber: 20.2 Consensus size: 42
4261569 TTTTCTTTAG
* * * ** *
4261579 CCCGTACATCCGAGCCACCAGGGTGCCCCTGCTGCTCGAGGCA
1 CCCGCACATCCAAG-CACCAAGGTGCCAATGCTGCTCGAGGCT
* * * * *
4261622 CCCGCACATCCAA-CGTCCTAGGTTACCGATGGTG-TCCGAGGCT
1 CCCGCACATCCAAGC-ACCAAGG-TGCCAATGCTGCT-CGAGGCT
* *
4261665 CCCGCACATCCAAGCACCAAGGTGCCAATGCTTCTTGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
*
4261707 CCCACACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
* * * *
4261749 CCCGCACATCCAGGGCACCAAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCA-AGCACCAAGGTGCCAATGCTGCTCGAGGCT
* * ** * * *
4261792 CCTGCACGA-CCAAAG-GCTGAGGTTGCCGATGGTGTTCGAGGCT
1 CCCGCAC-ATCC-AAGCACCAAGG-TGCCAATGCTGCTCGAGGCT
* * * *
4261835 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGTT
1 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
* * ** * * * * *
4261877 CTCGCACGAT-CATG-GTCTAGGTTGCCGATGGTGCCCGAGGTT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTCGAGGCT
* * * * * * *
4261919 CTCGCACGAT-CAAG-GCCTAGGTTGCCGATGGTGCCCGAGGTT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTCGAGGCT
* ** * * * * *
4261961 CTCGCACGAT-CAAG-GTCTAGGTTGCCGATGGTGCCCGAGGTT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTCGAGGCT
* ** * * * * *
4262003 CTCGCACGAT-CAAG-GTCTAGGTTGCCGATGGTGCCCGAGGTT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTCGAGGCT
* ** * * * * *
4262045 CTCGCACGAT-CAAG-GTCTAGGTTGCCGATGGTGCCCGAGGTT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTCGAGGCT
* * * * *
4262087 CTCGCACGAT-CAAGCACGACTAGGGGCCTAGGTTGCCGATGGTGCCCAAGGCT
1 CCCGCAC-ATCCAAGCAC--C-A-------AGG-TGCCAATGCTGCTCGAGGCT
* * *
4262140 CCCGCACATCCAAGCACCAAGGTGCCGATGGTTCTCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
* * * * * *
4262182 TCCGTACATCCAAGCACAAAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
*
4262224 CCCGCACGA-CCAAGCACCAAGGTGCCAATGCTTCTCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
* * * * * *
4262266 TCCGTACATCCAAGCACAAAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
* *
4262308 CCCGCACGA-CCAAGCACCAAGGTGCCAATGCTTCTCGAGTCT
1 CCCGCAC-ATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
*
4262350 CCCACACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
* * * *
4262392 CCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCCCGAGGTT
1 CCCGCACATCCAA-GCACCAAGGTGCCAATGCTGCTCGAGGCT
*
4262435 CTCGCAC
1 CCCGCAC
4262442 GATCAAGGTC
Statistics
Matches: 698, Mismatches: 92, Indels: 60
0.82 0.11 0.07
Matches are distributed among these distances:
41 7 0.01
42 502 0.72
43 146 0.21
44 3 0.00
45 1 0.00
50 1 0.00
51 1 0.00
52 2 0.00
53 35 0.05
ACGTcount: A:0.20, C:0.33, G:0.29, T:0.18
Consensus pattern (42 bp):
CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
Found at i:4261917 original size:19 final size:19
Alignment explanation
Indices: 4261895--4261960 Score: 51
Period size: 19 Copynumber: 3.3 Consensus size: 19
4261885 ATCATGGTCT
4261895 AGGTTGCCGATGGTGCCCG
1 AGGTTGCCGATGGTGCCCG
*** * *
4261914 AGGTTCTCGCACGATCAAGGCCT
1 AGG-T-T-GC-CGATGGTGCCCG
4261937 AGGTTGCCGATGGTGCCCG
1 AGGTTGCCGATGGTGCCCG
4261956 AGGTT
1 AGGTT
4261961 CTCGCACGAT
Statistics
Matches: 33, Mismatches: 10, Indels: 8
0.65 0.20 0.16
Matches are distributed among these distances:
19 15 0.45
20 3 0.09
21 2 0.06
22 3 0.09
23 10 0.30
ACGTcount: A:0.15, C:0.26, G:0.36, T:0.23
Consensus pattern (19 bp):
AGGTTGCCGATGGTGCCCG
Found at i:4261948 original size:84 final size:85
Alignment explanation
Indices: 4261772--4262567 Score: 661
Period size: 84 Copynumber: 9.3 Consensus size: 85
4261762 GGCACCAAGG
* ** *
4261772 TGCCGATGGTGCCCGAGGCTC-CTGCACGACCAAAGG-CTGAGGTTGCCGATGGTGTTCGAGGCT
1 TGCCGATGGTGCCCGAGGCTCTC-GCACGATC-AAGGCCT-AGGTTGCCGATGGTGCCCGAGGTT
* * *
4261835 CCCGCAC-ATCCAAGCACCAAGG-
63 CTCGCACGATCCAAG-GCCTAGGT
* * *
4261857 TGCCGATGGTGCCCGAGGTTCTCGCACGATCATGGTCTAGGTTGCCGATGGTGCCCGAGGTTCTC
1 TGCCGATGGTGCCCGAGGCTCTCGCACGATCAAGGCCTAGGTTGCCGATGGTGCCCGAGGTTCTC
4261922 GCACGAT-CAAGGCCTAGGT
66 GCACGATCCAAGGCCTAGGT
* *
4261941 TGCCGATGGTGCCCGAGGTTCTCGCACGATCAAGGTCTAGGTTGCCGATGGTGCCCGAGGTTCTC
1 TGCCGATGGTGCCCGAGGCTCTCGCACGATCAAGGCCTAGGTTGCCGATGGTGCCCGAGGTTCTC
*
4262006 GCACGAT-CAAGGTCTAGGT
66 GCACGATCCAAGGCCTAGGT
* *
4262025 TGCCGATGGTGCCCGAGGTTCTCGCACGATCAAGGTCTAGGTTGCCGATGGTGCCCGAGGTTCTC
1 TGCCGATGGTGCCCGAGGCTCTCGCACGATCAAGGCCTAGGTTGCCGATGGTGCCCGAGGTTCTC
4262090 GCACGATCAAGCACGACTAGGGGCCTAGGT
66 GCACGAT----C-C-A--A--GGCCTAGGT
* * * * * *
4262120 TGCCGATGGTGCCCAAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTTCTCGAGGCTT
1 TGCCGATGGTGCCCGAGGCTCTCGCACGAT-CAAG-GCCTAGGTTGCCGATGGTGCCCGAGG-TT
* *
4262183 C-CGTAC-ATCCAA-GCACAAAGG-
63 CTCGCACGATCCAAGGC-C-TAGGT
* * * * * * * *
4262204 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCACCAAGG-TGCCAATGCTTCTCGAGGCTTC
1 TGCCGATGGTGCCCGAGGCTCTCGCACGATCAAG-GCCTAGGTTGCCGATGGTGCCCGAGG-TTC
* *
4262268 -CGTAC-ATCCAA-GCACAAAGG-
64 TCGCACGATCCAAGGC-C-TAGGT
* * * * * * * *
4262288 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCACCAAGG-TGCCAATGCTTCTCGA-G-TCT
1 TGCCGATGGTGCCCGAGGCTCTCGCACGATCAAG-GCCTAGGTTGCCGATGGTGCCCGAGGTTCT
* * * *
4262350 CCCACACATCCAAGCACCAAGG-
65 CGCAC-GATCCAAG-GCCTAGGT
* * * * *
4262372 TGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTGCCCGAGGTT
1 TGCCGATGGTGCCCGAGGCTCTCGCACGAT-CAAGG--CCTAGGTTGCCGATGGTGCCCGAGGTT
*
4262435 CTCGCACGAT-CAAGGTCTAGGT
63 CTCGCACGATCCAAGGCCTAGGT
* *
4262457 TGCCGATGGTGCCCGAGGTTCTCGCACGATCAAGGTCTAGGTTGCCGATGGTGCCCGAGGTTCTC
1 TGCCGATGGTGCCCGAGGCTCTCGCACGATCAAGGCCTAGGTTGCCGATGGTGCCCGAGGTTCTC
*
4262522 GCACGAT-CAAGGTCTAGGT
66 GCACGATCCAAGGCCTAGGT
*
4262541 TGCCGATGGTGCCCGAGGTTCTCGCAC
1 TGCCGATGGTGCCCGAGGCTCTCGCAC
4262568 TACCAAGGTG
Statistics
Matches: 627, Mismatches: 50, Indels: 69
0.84 0.07 0.09
Matches are distributed among these distances:
81 2 0.00
82 3 0.00
83 13 0.02
84 436 0.70
85 85 0.14
86 8 0.01
87 7 0.01
88 1 0.00
89 1 0.00
90 2 0.00
91 1 0.00
93 1 0.00
94 4 0.01
95 56 0.09
96 7 0.01
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.19
Consensus pattern (85 bp):
TGCCGATGGTGCCCGAGGCTCTCGCACGATCAAGGCCTAGGTTGCCGATGGTGCCCGAGGTTCTC
GCACGATCCAAGGCCTAGGT
Found at i:4261987 original size:126 final size:125
Alignment explanation
Indices: 4261717--4262567 Score: 708
Period size: 126 Copynumber: 6.6 Consensus size: 125
4261707 CCCACACATC
* * * * * * *
4261717 CAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCAGGGCACCAAGGTGCCGATGGT
1 CAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCTCGCACATCCAAGG--TCAAGGTGCCGATGGT
* * ** * *
4261782 GCCCGAGGCTC-CTGCACGACCAAAGG-CTGAGGTTGCCGATGGTGTTCGAGGCTCCCGCAC-AT
64 GCCCGAGGTTCTC-GCACGATC-AAGGCCT-AGGTTGCCGATGGTGCCCGAGGTTCTCGCACGAT
* *
4261844 CCAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCTCGCACGAT-CATGGTCTAGGTTGCCGATGG
1 -CAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCTCGCAC-ATCCAAGGTCAAGG-TGCCGATGG
4261908 TGCCCGAGGTTCTCGCACGATCAAGGCCTAGGTTGCCGATGGTGCCCGAGGTTCTCGCACGAT
63 TGCCCGAGGTTCTCGCACGATCAAGGCCTAGGTTGCCGATGGTGCCCGAGGTTCTCGCACGAT
** * *
4261971 CAAG-GTCTAGGTTGCCGATGGTGCCCGAGGTTCTCGCACGAT-CAAGGTCTAGGTTGCCGATGG
1 CAAGCACCAAGG-TGCCGATGGTGCCCGAGGTTCTCGCAC-ATCCAAGGTCAAGG-TGCCGATGG
*
4262034 TGCCCGAGGTTCTCGCACGATCAAGGTCTAGGTTGCCGATGGTGCCCGAGGTTCTCGCACGAT
63 TGCCCGAGGTTCTCGCACGATCAAGGCCTAGGTTGCCGATGGTGCCCGAGGTTCTCGCACGAT
* * * **
4262097 CAAGCACGACTAGGGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCGCACATCCAAGCACCAAGG
1 CAAGCAC--C-A-------AGG-TGCCGATGGTGCCCGAGGTTCTCGCACATCCAAG-GTCAAGG
* * * * *
4262162 TGCCGATGGTTCTCGAGGCTTC-CGTAC-ATCCAA-GCACAAAGG-TGCCGATGGTGCCCGAGGC
54 TGCCGATGGTGCCCGAGG-TTCTCGCACGAT-CAAGGC-C-TAGGTTGCCGATGGTGCCCGAGGT
* *
4262223 TCCCGCACGAC
115 TCTCGCACGAT
* * * * * **
4262234 CAAGCACCAAGGTGCCAATGCTTCTCGAGGCTTC-CGTACATCCAAGCACAAAGGTGCCGATGGT
1 CAAGCACCAAGGTGCCGATGGTGCCCGAGG-TTCTCGCACATCCAAGGTC-AAGGTGCCGATGGT
* * * * * * * * * * *
4262298 GCCCGAGGCTCCCGCACGACCAAGCACCAAGG-TGCCAATGCTTCTCGA-G-TCTCCCACACAT
64 GCCCGAGGTTCTCGCACGATCAAG-GCCTAGGTTGCCGATGGTGCCCGAGGTTCTCGCAC-GAT
* * * * * *
4262359 CCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGG
1 -CAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCTCGCACATCCAAGG--TCAAGGTGCCGATGG
*
4262424 TGCCCGAGGTTCTCGCACGATCAAGGTCTAGGTTGCCGATGGTGCCCGAGGTTCTCGCACGAT
63 TGCCCGAGGTTCTCGCACGATCAAGGCCTAGGTTGCCGATGGTGCCCGAGGTTCTCGCACGAT
** * *
4262487 CAAG-GTCTAGGTTGCCGATGGTGCCCGAGGTTCTCGCACGAT-CAAGGTCTAGGTTGCCGATGG
1 CAAGCACCAAGG-TGCCGATGGTGCCCGAGGTTCTCGCAC-ATCCAAGGTCAAGG-TGCCGATGG
4262550 TGCCCGAGGTTCTCGCAC
63 TGCCCGAGGTTCTCGCAC
4262568 TACCAAGGTG
Statistics
Matches: 597, Mismatches: 86, Indels: 82
0.78 0.11 0.11
Matches are distributed among these distances:
124 6 0.01
125 15 0.03
126 297 0.50
127 116 0.19
128 46 0.08
129 10 0.02
134 1 0.00
135 1 0.00
136 5 0.01
137 90 0.15
138 10 0.02
ACGTcount: A:0.20, C:0.31, G:0.30, T:0.19
Consensus pattern (125 bp):
CAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCTCGCACATCCAAGGTCAAGGTGCCGATGGTGC
CCGAGGTTCTCGCACGATCAAGGCCTAGGTTGCCGATGGTGCCCGAGGTTCTCGCACGAT
Found at i:4262456 original size:23 final size:23
Alignment explanation
Indices: 4262430--4262541 Score: 60
Period size: 23 Copynumber: 5.2 Consensus size: 23
4262420 ATGGTGCCCG
4262430 AGGTTCTCGCACGATCAAGGTCT
1 AGGTTCTCGCACGATCAAGGTCT
*** ** *
4262453 AGG-T-T-GC-CGATGGTGCCCG
1 AGGTTCTCGCACGATCAAGGTCT
4262472 AGGTTCTCGCACGATCAAGGTCT
1 AGGTTCTCGCACGATCAAGGTCT
*** ** *
4262495 AGG-T-T-GC-CGATGGTGCCCG
1 AGGTTCTCGCACGATCAAGGTCT
4262514 AGGTTCTCGCACGATCAAGGTCT
1 AGGTTCTCGCACGATCAAGGTCT
4262537 AGGTT
1 AGGTT
4262542 GCCGATGGTG
Statistics
Matches: 57, Mismatches: 24, Indels: 16
0.59 0.25 0.16
Matches are distributed among these distances:
19 18 0.32
20 6 0.11
21 4 0.07
22 6 0.11
23 23 0.40
ACGTcount: A:0.18, C:0.25, G:0.32, T:0.25
Consensus pattern (23 bp):
AGGTTCTCGCACGATCAAGGTCT
Found at i:4262474 original size:42 final size:42
Alignment explanation
Indices: 4262415--4262576 Score: 306
Period size: 42 Copynumber: 3.9 Consensus size: 42
4262405 GGCACCAAGG
4262415 TGCCGATGGTGCCCGAGGTTCTCGCACGATCAAGGTCTAGGT
1 TGCCGATGGTGCCCGAGGTTCTCGCACGATCAAGGTCTAGGT
4262457 TGCCGATGGTGCCCGAGGTTCTCGCACGATCAAGGTCTAGGT
1 TGCCGATGGTGCCCGAGGTTCTCGCACGATCAAGGTCTAGGT
4262499 TGCCGATGGTGCCCGAGGTTCTCGCACGATCAAGGTCTAGGT
1 TGCCGATGGTGCCCGAGGTTCTCGCACGATCAAGGTCTAGGT
* *
4262541 TGCCGATGGTGCCCGAGGTTCTCGCACTACCAAGGT
1 TGCCGATGGTGCCCGAGGTTCTCGCACGATCAAGGT
4262577 GCCGGTGGTG
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 118 1.00
ACGTcount: A:0.17, C:0.27, G:0.33, T:0.23
Consensus pattern (42 bp):
TGCCGATGGTGCCCGAGGTTCTCGCACGATCAAGGTCTAGGT
Found at i:4262652 original size:78 final size:77
Alignment explanation
Indices: 4262408--4262639 Score: 232
Period size: 84 Copynumber: 2.9 Consensus size: 77
4262398 CATCCAAGGC
* * * * *
4262408 ACCAAGGTGCCGATGGTGCCCGAGGTTCTCGCACGATCAAGGTCTAGGTTGCCGATGGTGCCCGA
1 ACCAAGGTGCCGATGGTGCCCAAGGCTCCCGCACGATCAACGTCTAGGTTGCCGATGGTGCCCAA
*
4262473 GGTTCTCGCACGAT
66 GGCTCTCGCAC--T
* * * * * *
4262487 CAAGGTCTAGGTTGCCGATGGTGCCCGAGGTTCTCGCACGATCAAGGTCTAGGTTGCCGATGGTG
1 --A--CCAAGG-TGCCGATGGTGCCCAAGGCTCCCGCACGATCAACGTCTAGGTTGCCGATGGTG
* *
4262552 CCCGAGGTTCTCGCACT
61 CCCAAGGCTCTCGCACT
* *
4262569 ACCAAGGTGCCGGTGGTGCCCAAGGCTCCCGCACGA-CAAACGTCCTAGGTTGCCGATGGTGTCC
1 ACCAAGGTGCCGATGGTGCCCAAGGCTCCCGCACGATC-AACGT-CTAGGTTGCCGATGGTGCCC
4262633 AAGGCTC
64 AAGGCTC
4262640 CAGCACGTCC
Statistics
Matches: 134, Mismatches: 12, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
76 1 0.01
77 29 0.22
78 28 0.21
80 1 0.01
81 1 0.01
82 1 0.01
83 4 0.03
84 69 0.51
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.21
Consensus pattern (77 bp):
ACCAAGGTGCCGATGGTGCCCAAGGCTCCCGCACGATCAACGTCTAGGTTGCCGATGGTGCCCAA
GGCTCTCGCACT
Found at i:4262874 original size:24 final size:24
Alignment explanation
Indices: 4262842--4262889 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
4262832 CAATATTCCA
*
4262842 GGATGGCTCGCAGGAGCACCGCCG
1 GGATGGCTCACAGGAGCACCGCCG
*
4262866 GGATGGCTCACCGGAGCACCGCCG
1 GGATGGCTCACAGGAGCACCGCCG
4262890 AAAACCTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.17, C:0.35, G:0.40, T:0.08
Consensus pattern (24 bp):
GGATGGCTCACAGGAGCACCGCCG
Found at i:4263379 original size:58 final size:59
Alignment explanation
Indices: 4263288--4263408 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
4263278 GGGAGGGACA
* *
4263288 GGGACAATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCCGAATCCTACC-TTT
1 GGGACAATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
* * *
4263346 GGGACCATTCATTCATTATTGGGTACCGAACATGTAACGGTATCCGAATTCTACCTTTT
1 GGGACAATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
4263405 GGGA
1 GGGA
4263409 TTGGGNNNNN
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 50 0.88
59 7 0.12
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (59 bp):
GGGACAATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
Found at i:4268327 original size:240 final size:240
Alignment explanation
Indices: 4267904--4268382 Score: 933
Period size: 240 Copynumber: 2.0 Consensus size: 240
4267894 ACGGGCGGTG
4267904 TGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTT
1 TGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTT
4267969 GAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGT
66 GAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGT
4268034 CGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG
131 CGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG
*
4268099 GCATCACAGACCTGTTATTGCCTCAAACTT-TTGTGGCCTAAAAGT
196 GCATCACAGACCTGTTATTGCCTCAAACTTCCT-TGGCCTAAAAGT
4268144 TGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTT
1 TGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTT
4268209 GAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGT
66 GAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGT
4268274 CGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG
131 CGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG
4268339 GCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAAAG
196 GCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAAAG
4268383 GCCATAGTCC
Statistics
Matches: 237, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
240 236 1.00
241 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.23
Consensus pattern (240 bp):
TGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTT
GAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGT
CGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG
GCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAAAGT
Found at i:4270330 original size:85 final size:85
Alignment explanation
Indices: 4270159--4272038 Score: 2038
Period size: 85 Copynumber: 22.2 Consensus size: 85
4270149 TAATGAAGNT
* * ** * * * * *
4270159 CTAGGTTGCCTATGGTGTCCGAGGCTCTCGCAC-ACCCAAGCACCAAGG-TACCAATGCTGCTCG
1 CTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * *
4270222 AGGCTTCCGCAC-ATCCGAGGCAC
64 AGGCTCCCGCACGA-CCAAGG-GC
* * * * * **
4270245 CAAGGTGCCGATGGTGCCCAAGGCTCCCGCATGACCAAGGGCTTAGGTTGCCGATGGTGTTCGAG
1 CTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAG
**
4270310 GCTCCCGCAC-ATCCAAGCAC
66 GCTCCCGCACGA-CCAAGGGC
* * * * * *
4270330 CAAGGTGCTGATGGTGCCCGAGGTTCTCGCACGATCAA-GGCTTAGGTTGCCCATGGTGCCCGAG
1 CTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAG
* * * *
4270394 GTTCTCGTACGATCAA-GGC
66 GCTCCCGCACGACCAAGGGC
* * *
4270413 CTAGGTTGCCGATAGTGCCCGAGAG-TCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
1 CTAGG-TGCCGATGGTGCCCGAG-GCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
4270477 AGGCTACCGCAC-ATCCAAGGGC
64 AGGCTCCCGCACGA-CCAAGGGC
* *
4270499 CTAGGTTGCCGATGGTGCCCGAGGCTAC-CGCAC-ATCCAAGGGCCTAGG-TGCCGATTGTGGCC
1 CTAGG-TGCCGATGGTGCCCGAGGCT-CTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
4270561 GAGGCTCCCGCACGACCAAGGGC
63 GAGGCTCCCGCACGACCAAGGGC
* *
4270584 CTAGGTGCCAATGGT-CCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAG
1 CTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAG
* *
4270648 GCTCCTGCACGACCAGGGGC
66 GCTCCCGCACGACCAAGGGC
* * * ** * *
4270668 CTAGGTTGCCGATGGTGCCCAAGGCTCCCGTAC-ATCCAAGCACCAAGG-TGCCAATGGTGCCCG
1 CTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * *
4270731 AGGTTCTCGCACGATCAA-GGC
64 AGGCTCCCGCACGACCAAGGGC
* * * * *
4270752 CTAGGTTGCCGATGGTGCCCGAGGTTCTCGTACAATCAA-GGCCTAGGTTACCGATGGTGCCCGA
1 CTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
* *
4270816 GGCTCCCGCACGGCCAGGGGC
65 GGCTCCCGCACGACCAAGGGC
* *
4270837 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGGCCG
1 CTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCG
4270900 AGGCTCCCGCACGACCAAGGGC
64 AGGCTCCCGCACGACCAAGGGC
* * *
4270922 CTAGGTGCCAATGGT-CCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTACCGATGGTGCTCGAG
1 CTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAG
*
4270986 GCTCCCGCACGACCAGGGGC
66 GCTCCCGCACGACCAAGGGC
* * ** * *
4271006 CTAGGCTGTCGATGGTGCCC-AGGGCTCCCGCAC-ATCCAAGCACC-AAGCTGCCGATGGTGCCC
1 CTAGG-TGCCGATGGTGCCCGA-GGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
4271068 GAGGCTCCCGCACGACCAAGGGC
63 GAGGCTCCCGCACGACCAAGGGC
* * * *
4271091 CTAGGTGCCAATGGTGCCCAAGGCTCTCGCACGGCCAGGGGCCTAGGTTGCCGATGGTGCCCGAG
1 CTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAG
4271156 GCTCCCGCACGACCAAGGGC
66 GCTCCCGCACGACCAAGGGC
* * * *
4271176 CTAGGTGCCAATGGTGCCCAAGGCTCTCGCACGGCCAGGGGCCTAGGTTGCCGATGGTGCCCGAG
1 CTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAG
4271241 GCTCCCGCACGACCAAGGGC
66 GCTCCCGCACGACCAAGGGC
* * * *
4271261 CTAGGTGCCAATGGTGCCCAAGGCTCTCGCACGGCCAGGGGCCTAGGTTGCCGATGGTGCCCGAG
1 CTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAG
4271326 GCTCCCGCACGACCAAGGGC
66 GCTCCCGCACGACCAAGGGC
* * * *
4271346 CTAGGTGCCAATGGTGCCCAAGGCTCTCGCACGGCCAGGGGCCTAGGTTGCCGATGGTGCCCGAG
1 CTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAG
4271411 GCTCCCGCAC-ATCCAAGGGC
66 GCTCCCGCACGA-CCAAGGGC
* * * * * * *
4271431 CTAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGCGCCTCGGTTGCTGATGGTGGCTGAG
1 CTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAG
* *
4271496 GCTCCCGTACGACCAGGGGC
66 GCTCCCGCACGACCAAGGGC
* * * **
4271516 CTAGGTTCCGATGGTACCCGAGGCTCTCGCACGACCAAGAGCCTAGGTTGCCGATGGT-ATCGAG
1 CTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAG
* * *
4271580 GCTCCCGCGCGACTAGGGGC
66 GCTCCCGCACGACCAAGGGC
* ** * *
4271600 CTAGGCTGCCGATGGTGCCC-AGGGCTCCCGCAC-ATCCAAGCACC-AAGCTGCCGATGGTGCCC
1 CTAGG-TGCCGATGGTGCCCGA-GGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
4271662 GAGGCTCCCGCACGACCAAGGGC
63 GAGGCTCCCGCACGACCAAGGGC
* * * * *
4271685 CTAGGTGCCAATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGCTGTCGATGGTGGCCGAA
1 CTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAG
** * * *
4271750 GCTCCTACATGACTAGGGGC
66 GCTCCCGCACGACCAAGGGC
* * * *
4271770 CTAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGCGCCTAGGTTGCCGATGGTGGCCGAG
1 CTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAG
* *
4271835 GCTCTCGCACGACCAGGGGC
66 GCTCCCGCACGACCAAGGGC
* * * **
4271855 CTAGGTTCCGATGGTACCCGAGGCTCTCGCACGACCAAGAGCCTAGGTTGCCGATGGT-ATCGAG
1 CTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAG
* * *
4271919 GCTCCCGCGCGACTAGGGGC
66 GCTCCCGCACGACCAAGGGC
* ** * *
4271939 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGGTGGTGCCCG
1 CTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * * *
4272002 AAGCTCTCGCACGACAAACGTC
64 AGGCTCCCGCACGACCAAGGGC
4272024 CTAGGTTGCCGATGG
1 CTAGG-TGCCGATGG
4272039 CGTCCAAGGC
Statistics
Matches: 1544, Mismatches: 206, Indels: 89
0.84 0.11 0.05
Matches are distributed among these distances:
82 1 0.00
83 65 0.04
84 352 0.23
85 996 0.65
86 129 0.08
87 1 0.00
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (85 bp):
CTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAG
GCTCCCGCACGACCAAGGGC
Found at i:4270361 original size:42 final size:43
Alignment explanation
Indices: 4270159--4272063 Score: 2022
Period size: 42 Copynumber: 44.9 Consensus size: 43
4270149 TAATGAAGNT
* * * **
4270159 CTAGGTTGCCTATGGTGTCCGAGGCTCTCGCAC-ACCCAAGCAC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC
* * * * * * * *
4270202 CAAGG-TACCAATGCTGCTCGAGGCTTCCGCAC-ATCCGAGGCAC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-GC
* * *
4270245 CAAGG-TGCCGATGGTGCCCAAGGCTCCCGCATGACCAAGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* ** **
4270287 TTAGGTTGCCGATGGTGTTCGAGGCTCCCGCAC-ATCCAAGCAC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC
* * * * *
4270330 CAAGG-TGCTGATGGTGCCCGAGGTTCTCGCACGATCAA-GGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * * * * *
4270371 TTAGGTTGCCCATGGTGCCCGAGGTTCTCGTACGATCAA-GGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* *
4270413 CTAGGTTGCCGATAGTGCCCGAGAG-TCCCGCACGACCAGGGGC
1 CTAGGTTGCCGATGGTGCCCGAG-GCTCCCGCACGACCAAGGGC
*
4270456 CTAGGTTGCCGATGGTGCCCGAGGCTACCGCAC-ATCCAAGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC
*
4270499 CTAGGTTGCCGATGGTGCCCGAGGCTACCGCAC-ATCCAAGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC
* *
4270542 CTAGG-TGCCGATTGTGGCCGAGGCTCCCGCACGACCAAGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* *
4270584 CTAGG-TGCCAATGGT-CCCGAGGCTCTCGCACGACCAAGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * *
4270625 CTAGGTTACCGATGGTGCCCGAGGCTCCTGCACGACCAGGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * **
4270668 CTAGGTTGCCGATGGTGCCCAAGGCTCCCGTAC-ATCCAAGCAC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC
* * * * *
4270711 CAAGG-TGCCAATGGTGCCCGAGGTTCTCGCACGATCAA-GGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * * * *
4270752 CTAGGTTGCCGATGGTGCCCGAGGTTCTCGTACAATCAA-GGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * *
4270794 CTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGGCCAGGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
4270837 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC
*
4270880 CTAGG-TGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* *
4270922 CTAGG-TGCCAATGGT-CCCGAGGCTCTCGCACGACCAAGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * *
4270963 CTAGGTTACCGATGGTGCTCGAGGCTCCCGCACGACCAGGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * **
4271006 CTAGGCTGTCGATGGTGCCC-AGGGCTCCCGCAC-ATCCAAGCAC
1 CTAGGTTGCCGATGGTGCCCGA-GGCTCCCGCACGA-CCAAGGGC
* *
4271049 C-AAGCTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * * * *
4271091 CTAGG-TGCCAATGGTGCCCAAGGCTCTCGCACGGCCAGGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
4271133 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * * * *
4271176 CTAGG-TGCCAATGGTGCCCAAGGCTCTCGCACGGCCAGGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
4271218 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * * * *
4271261 CTAGG-TGCCAATGGTGCCCAAGGCTCTCGCACGGCCAGGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
4271303 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * * * *
4271346 CTAGG-TGCCAATGGTGCCCAAGGCTCTCGCACGGCCAGGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
4271388 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC
* *
4271431 CTAGG-TGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGCGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * * * * *
4271473 CTCGGTTGCTGATGGTGGCTGAGGCTCCCGTACGACCAGGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * *
4271516 CTAGGTT-CCGATGGTACCCGAGGCTCTCGCACGACCAAGAGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
** * * *
4271558 CTAGGTTGCCGATGGT-ATCGAGGCTCCCGCGCGACTAGGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* **
4271600 CTAGGCTGCCGATGGTGCCC-AGGGCTCCCGCAC-ATCCAAGCAC
1 CTAGGTTGCCGATGGTGCCCGA-GGCTCCCGCACGA-CCAAGGGC
* *
4271643 C-AAGCTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* *
4271685 CTAGG-TGCCAATGGTGCCCGAGGCTCTCGCACGACCAAGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * * * ** * * *
4271727 CTAGGCTGTCGATGGTGGCCGAAGCTCCTACATGACTAGGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* *
4271770 CTAGG-TGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGCGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * *
4271812 CTAGGTTGCCGATGGTGGCCGAGGCTCTCGCACGACCAGGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * *
4271855 CTAGGTT-CCGATGGTACCCGAGGCTCTCGCACGACCAAGAGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
** * * *
4271897 CTAGGTTGCCGATGGT-ATCGAGGCTCCCGCGCGACTAGGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
**
4271939 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCAC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC
* * * * * * *
4271982 CAAGG-TGCCGGTGGTGCCCGAAGCTCTCGCACGACAAACGTC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * * * *
4272024 CTAGGTTGCCGATGGCGTCCAAGGCTCCAGCACGTCCAAG
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
4272064 CAGCAATGTG
Statistics
Matches: 1562, Mismatches: 253, Indels: 94
0.82 0.13 0.05
Matches are distributed among these distances:
41 67 0.04
42 825 0.53
43 669 0.43
44 1 0.00
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (43 bp):
CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
Found at i:4270471 original size:127 final size:127
Alignment explanation
Indices: 4270250--4272063 Score: 1891
Period size: 127 Copynumber: 14.3 Consensus size: 127
4270240 GGCACCAAGG
* * * **
4270250 TGCCGATGGTGCCCAAGGCTCCCGCATGACCAAGGGCTTAGGTTGCCGATGGTGTTCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
** * * * * *
4270315 CGCAC-ATCCAAGCACCAAGG-TGCTGATGGTGCCCGAGGTTCTCGCACGATCAAGGCTTAGGT
65 CGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGCCTAGGT
* * * * * *
4270377 TGCCCATGGTGCCCGAGGTTCTCGTACGATCAAGGCCTAGGTTGCCGATAGTGCCCGAGAG-TCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCCCGAG-GCTCC
*
4270441 CGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTAC-CGCAC-ATCCAAGGGCCTAGG
65 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT-CTCGCACGA-CCAA-GGCCTAGG
4270504 T
127 T
* * *
4270505 TGCCGATGGTGCCCGAGGCTACCGCAC-ATCCAAGGGCCTAGG-TGCCGATTGTGGCCGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA-GGCCTAGGTTGCCGATGGTGCCCGAGGCTC
*
4270568 CCGCACGACCAAGGGCCTAGG-TGCCAATGGT-CCCGAGGCTCTCGCACGACCAAGGGCCTAGGT
64 CCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAA-GGCCTAGGT
* * * *
4270631 TACCGATGGTGCCCGAGGCTCCTGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCAAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* ** * * * *
4270696 CGTAC-ATCCAAGCACCAAGG-TGCCAATGGTGCCCGAGGTTCTCGCACGATCAAGGCCTAGGT
65 CGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGCCTAGGT
* * * * * *
4270758 TGCCGATGGTGCCCGAGGTTCTCGTACAATCAAGGCCTAGGTTACCGATGGTGCCCGAGGCTCCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * *
4270823 GCACGGCCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCCTAGG-
66 GCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAA-GGCCTAGGT
* * *
4270885 TGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCAATGGT-CCCGAGGCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * * * *
4270948 CGCACGACCAAGGGCCTAGGTTACCGATGGTGCTCGAGGCTCCCGCACGACCAGGGGCCTAGGC
65 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCA-AGGCCTAGGT
* * * *
4271012 TGTCGATGGTGCCC-AGGGCTCCCGCAC-ATCCAA-GCACCAAGCTGCCGATGGTGCCCGAGGCT
1 TGCCGATGGTGCCCGA-GGCTCCCGCACGA-CCAAGGC-CTAGGTTGCCGATGGTGCCCGAGGCT
* * * *
4271074 CCCGCACGACCAAGGGCCTAGG-TGCCAATGGTGCCCAAGGCTCTCGCACGGCCAGGGGCCTAGG
63 CCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCA-AGGCCTAGG
4271138 T
127 T
* * *
4271139 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCAATGGTGCCCAAGGCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * *
4271203 CGCACGGCCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-
65 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAA-GGCCTAGGT
* * * * *
4271266 TGCCAATGGTGCCCAAGGCTCTCGCACGGCCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * * *
4271331 CGCACGACCAAGGGCCTAGG-TGCCAATGGTGCCCAAGGCTCTCGCACGGCCAGGGGCCTAGGT
65 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCA-AGGCCTAGGT
*
4271394 TGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGGCCGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA-GGCCTAGGTTGCCGATGGTGCCCGAGGCTC
* * * * * * * *
4271457 CCGCACGACCAAGCGCCTCGGTTGCTGATGGTGGCTGAGGCTCCCGTACGACCAGGGGCCTAGGT
64 CCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCA-AGGCCTAGGT
* * **
4271522 T-CCGATGGTACCCGAGGCTCTCGCACGACCAAGAGCCTAGGTTGCCGATGGT-ATCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * * * * * *
4271585 CGCGCGACTAGGGGCCTAGGCTGCCGATGGTGCCC-AGGGCTCCCGCAC-ATCCAA-GCACCAAG
65 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA-GGCTCTCGCACGA-CCAAGGC-CTAGG
*
4271647 C
127 T
* *
4271648 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCAATGGTGCCCGAGGCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * * * * * * *
4271712 CGCACGACCAAGGGCCTAGGCTGTCGATGGTGGCCGAAGCTC-CTACATGACTAGGGGCCTAGG-
65 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTC-GCACGACCA-AGGCCTAGGT
* * *
4271775 TGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGCGCCTAGGTTGCCGATGGTGGCCGAGGCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* *
4271840 CGCACGACCAGGGGCCTAGGTT-CCGATGGTACCCGAGGCTCTCGCACGACCAAGAGCCTAGGT
65 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAG-GCCTAGGT
** * * *
4271903 TGCCGATGGT-ATCGAGGCTCCCGCGCGACTAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
** * * * * *
4271967 CGCAC-ATCCAAGCACCAAGG-TGCCGGTGGTGCCCGAAGCTCTCGCACGACAAACGTCCTAGGT
65 CGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAA-GGCCTAGGT
* * * * *
4272030 TGCCGATGGCGTCCAAGGCTCCAGCACGTCCAAG
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
4272064 CAGCAATGTG
Statistics
Matches: 1414, Mismatches: 207, Indels: 132
0.81 0.12 0.08
Matches are distributed among these distances:
125 5 0.00
126 238 0.17
127 789 0.56
128 370 0.26
129 12 0.01
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (127 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
GCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGCCTAGGT
Found at i:4270533 original size:212 final size:211
Alignment explanation
Indices: 4270159--4272063 Score: 1946
Period size: 212 Copynumber: 9.0 Consensus size: 211
4270149 TAATGAAGNT
* * * * * * * * *
4270159 CTAGGTTGCCTATGGTGTCCGAGGCTCTCGCAC-ACCCAAGCACCAAGG-TACCAATGCTGCTCG
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GCCTAGGTTGCCGATGGTGCCCG
* ** * * *
4270222 AGGCTTCCGCAC-ATCCGAGGCACCAAGG-TGCCGATGGTGCCCAAGGCTCCCGCATGACCAAGG
64 AGGCTCCCGCACGA-CC-AGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA-CACCAAGG
* ** ** * *
4270285 GCTTAGGTTGCCGATGGTGTTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCTGATGGTGCC
126 GCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
4270348 CGAGGTTCTCGCACGATCAAGGC
189 CGAGGCTCCCGCACGACCAAGGC
* * * * * * *
4270371 TTAGGTTGCCCATGGTGCCCGAGGTTCTCGTACGATCAAGGCCTAGGTTGCCGATAGTGCCCGAG
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCCCGAG
*
4270436 AG-TCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTACCGCACATCCAAGGGCC
66 -GCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGGGCC
* * *
4270500 TAGGTTGCCGATGGTGCCCGAGGCTACCGCAC-ATCCAAGGGCCTAGG-TGCCGATTGTGGCCGA
129 TAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGA
4270563 GGCTCCCGCACGACCAAGGGC
192 GGCTCCCGCACGACCAA-GGC
* * *
4270584 CTAGG-TGCCAATGGT-CCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGA
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCCCGA
* * * **
4270647 GGCTCCTGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCGTACATCCAAGCACC
65 GGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGGGCC
* * * * *
4270712 AAGGTGCCAATGGTGCCCGAGGTTCTCGCACGATCAA-GGCCTAGGTTGCCGATGGTGCCCGAGG
129 TAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGG
* * * * *
4270776 TTCTCGTACAATCAAGGC
194 CTCCCGCACGACCAAGGC
* * *
4270794 CTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGGCCAGGGGCCTAGGTTGCCGATGGTGCCCGA
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGCCTAGGTTGCCGATGGTGCCCGA
* *
4270859 GGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGC
65 GGCTCCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGC
* * * *
4270922 CTAGGTGCCAATGGT-CCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTACCGATGGTGCTCGAG
128 CTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAG
*
4270986 GCTCCCGCACGACCAGGGGC
193 GCTCCCGCACGACCA-AGGC
* * * * *
4271006 CTAGGCTGTCGATGGTGCCC-AGGGCTCCCGCAC-ATCCAA-GCACCAAGCTGCCGATGGTGCCC
1 CTAGGTTGCCGATGGTGCCCGA-GGCTCCCGCACGA-CCAAGGC-CTAGGTTGCCGATGGTGCCC
* * * * * *
4271068 GAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCAATGGTGCCCAAGGCTCTCGCACGGCCAGGGG
63 GAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGG
* *
4271132 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCAATGGTGCCCA
127 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * *
4271196 AGGCTCTCGCACGGCCAGGGGC
191 AGGCTCCCGCACGACCA-AGGC
* *
4271218 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCAATGGTGCCCAA
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCCCGA
* *
4271282 GGCTCTCGCACGGCCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCC
65 GGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCC
* * * * *
4271347 TAGGTGCCAATGGTGCCCAAGGCTCTCGCACGGCCAGGGGCCTAGGTTGCCGATGGTGCCCGAGG
129 TAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGG
4271412 CTCCCGCAC-ATCCAAGGGC
194 CTCCCGCACGA-CCAA-GGC
* * * * *
4271431 CTAGG-TGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGCGCCTCGGTTGCTGATGGTGGCTGA
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GCCTAGGTTGCCGATGGTGCCCGA
* * * *
4271495 GGCTCCCGTACGACCAGGGGCCTAGGTT-CCGATGGTACCCGAGGCTCTCGCACGACCAAGAGCC
65 GGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCC
** * * * *
4271559 TAGGTTGCCGATGGT-ATCGAGGCTCCCGCGCGACTAGGGGCCTAGGCTGCCGATGGTGCCC-AG
129 TAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA-
4271622 GGCTCCCGCAC-ATCCAA-GC
192 GGCTCCCGCACGA-CCAAGGC
* * * *
4271641 ACCAAGCTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCAATGGTGCCCG
1 -CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCCCG
* * * * * * ** * * *
4271705 AGGCTCTCGCACGACCAAGGGCCTAGGCTGTCGATGGTGGCCGAAGCTCCTACATGACTAGGGGC
64 AGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA-CACCAAGGGC
* * *
4271770 CTAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGCGCCTAGGTTGCCGATGGTGGCCGAG
128 CTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAG
* *
4271835 GCTCTCGCACGACCAGGGGC
193 GCTCCCGCACGACCA-AGGC
* * **
4271855 CTAGGTT-CCGATGGTACCCGAGGCTCTCGCACGACCAAGAGCCTAGGTTGCCGATGGT-ATCGA
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GCCTAGGTTGCCGATGGTGCCCGA
* * **
4271918 GGCTCCCGCGCGACTAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACC
65 GGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGGGCC
* * * * * * * * * *
4271983 AAGGTGCCGGTGGTGCCCGAAGCTCTCGCACGACAAACGTCCTAGGTTGCCGATGGCGTCCAAGG
129 TAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGG
* *
4272048 CTCCAGCACGTCCAAG
194 CTCCCGCACGACCAAG
4272064 CAGCAATGTG
Statistics
Matches: 1421, Mismatches: 223, Indels: 99
0.82 0.13 0.06
Matches are distributed among these distances:
210 40 0.03
211 307 0.22
212 892 0.63
213 178 0.13
214 4 0.00
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (211 bp):
CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCCCGAG
GCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACACCAAGGGCCTA
GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
CCCGCACGACCAAGGC
Found at i:4272259 original size:24 final size:24
Alignment explanation
Indices: 4272227--4272300 Score: 121
Period size: 24 Copynumber: 3.1 Consensus size: 24
4272217 TCGATATTCT
*
4272227 GGGATGGCTCACCGGAGCACCGCC
1 GGGATGGCTCGCCGGAGCACCGCC
4272251 GGGATGGCTCGCCGGAGCACCGCC
1 GGGATGGCTCGCCGGAGCACCGCC
* *
4272275 GGGATGGCTCGCTGGAGTACCGCC
1 GGGATGGCTCGCCGGAGCACCGCC
4272299 GG
1 GG
4272301 AACCTAACCG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.14, C:0.34, G:0.42, T:0.11
Consensus pattern (24 bp):
GGGATGGCTCGCCGGAGCACCGCC
Found at i:4272794 original size:58 final size:59
Alignment explanation
Indices: 4272697--4272818 Score: 183
Period size: 58 Copynumber: 2.1 Consensus size: 59
4272687 GGGAGGGACA
* * * *
4272697 GGGACGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCCGAATCCTACC-TTT
1 GGGATGATTCATTCATTATCGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
* *
4272755 GGGATGATTCATTCATTATCGGGTACCGAACATGTAACGGTATCCGAATTCTACCTTTT
1 GGGATGATTCATTCATTATCGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
4272814 GGGAT
1 GGGAT
4272819 TGGGGAGGGA
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
58 49 0.86
59 8 0.14
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (59 bp):
GGGATGATTCATTCATTATCGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
Found at i:4272883 original size:24 final size:24
Alignment explanation
Indices: 4272851--4272901 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
4272841 TTTGTGTATC
* * *
4272851 CCGGGATGGCTCGCCGGATCATCA
1 CCGGGATGGATCGCCGGAGCACCA
*
4272875 CCGGGATGGATCGTCGGAGCACCA
1 CCGGGATGGATCGCCGGAGCACCA
4272899 CCG
1 CCG
4272902 AGAACCTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.18, C:0.33, G:0.35, T:0.14
Consensus pattern (24 bp):
CCGGGATGGATCGCCGGAGCACCA
Found at i:4273595 original size:187 final size:186
Alignment explanation
Indices: 4273280--4273646 Score: 680
Period size: 187 Copynumber: 2.0 Consensus size: 186
4273270 GGGGCTCTTG
4273280 TTTTTTCTGTTTGCCCAAAATAAATACAAAAAGTATGGCATGGCATGGCCTGGCACGGCACGACA
1 TTTTTTCTGTTTGCCCAAAATAAATACAAAAAGTATGGCATGGCATGGCCTGGCACGGCACGACA
* * *
4273345 CGGCAGAAAATTGAACAAGTGCTCGGGCTGCCAATAGTTGGGAGCTCGCACTCGCACCACCACGG
66 CGGCAGAAAATTGAACAAGTGCTCGGGCTGCCAACACTTGGGAGCTCGCACCCGCACCACCACGG
* *
4273410 CCCCCGTTGTGCGATGTTTCCCGAGGGGGTGGCACGGCCAAGTGTTTAACTTAGAAA
131 CCCCCGTTGTGCCATGTTTCCCG-GGGGGCGGCACGGCCAAGTGTTTAACTTAGAAA
4273467 TTTTTTCTGTTTGCCCAAAATAAATACAAAAAGTATGGCATGGCATGGCCTGGCACGGCACGACA
1 TTTTTTCTGTTTGCCCAAAATAAATACAAAAAGTATGGCATGGCATGGCCTGGCACGGCACGACA
4273532 CGGCAGAAAATTGAACAAGTGCTCGGGCTGCCAACACTTGGGAGCTCGCACCCGCACCACCACGG
66 CGGCAGAAAATTGAACAAGTGCTCGGGCTGCCAACACTTGGGAGCTCGCACCCGCACCACCACGG
4273597 CCCCCGTTGTGCCATGTTTCCCGGGGGGCGGCACGGCCAAGTGTTTAACT
131 CCCCCGTTGTGCCATGTTTCCCGGGGGGCGGCACGGCCAAGTGTTTAACT
4273647 AACTCCTTAC
Statistics
Matches: 175, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
186 26 0.15
187 149 0.85
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (186 bp):
TTTTTTCTGTTTGCCCAAAATAAATACAAAAAGTATGGCATGGCATGGCCTGGCACGGCACGACA
CGGCAGAAAATTGAACAAGTGCTCGGGCTGCCAACACTTGGGAGCTCGCACCCGCACCACCACGG
CCCCCGTTGTGCCATGTTTCCCGGGGGGCGGCACGGCCAAGTGTTTAACTTAGAAA
Found at i:4279778 original size:334 final size:334
Alignment explanation
Indices: 4279168--4279836 Score: 1286
Period size: 334 Copynumber: 2.0 Consensus size: 334
4279158 CCTGCAGTAG
4279168 GGACGAGCAGACCAGTGCTCACCGTGAGGCGGACCGGCCGACCCACCCCTAAGTCCAACTACGAG
1 GGACGAGCAGACCAGTGCTCACCGTGAGGCGGACCGGCCGACCCACCCCTAAGTCCAACTACGAG
4279233 CTTTTTAACTGCAACAACTTAAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCA
66 CTTTTTAACTGCAACAACTTAAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCA
4279298 GACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCA
131 GACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCA
*
4279363 TAGAGCCCGGTATTGTTATTTTTTTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGC
196 TAGAGCCCGGTATTGTTATTTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGC
*
4279428 CTGCTGCCTTCTTGGATGTGGTAGCCGTTTCTCAGGTTCCCTCTCCGGAATCGAACCCTAATTCT
261 CTGCTGCCTTCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCT
4279493 CCGTCACCC
326 CCGTCACCC
*
4279502 GGACGAGCAGACCGGTGCTCACCGTGAGGCGGACCGGCCGACCCACCCCTAAGTCCAACTACGAG
1 GGACGAGCAGACCAGTGCTCACCGTGAGGCGGACCGGCCGACCCACCCCTAAGTCCAACTACGAG
4279567 CTTTTTAACTGCAACAACTTAAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCA
66 CTTTTTAACTGCAACAACTTAAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCA
4279632 GACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCA
131 GACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCA
4279697 TAGAGCCCGGTATTGTTA-TTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGC
196 TAGAGCCCGGTATTGTTATTTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGC
*
4279761 CTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTTAGGCTCCCTCTCCGGAATCGAACCCTAATTC
261 CTGCTGCCTT-CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC
4279826 TCCGTCACCC
325 TCCGTCACCC
4279836 G
1 G
4279837 TCACCACCCT
Statistics
Matches: 330, Mismatches: 4, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
333 55 0.17
334 275 0.83
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.27
Consensus pattern (334 bp):
GGACGAGCAGACCAGTGCTCACCGTGAGGCGGACCGGCCGACCCACCCCTAAGTCCAACTACGAG
CTTTTTAACTGCAACAACTTAAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCA
GACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCA
TAGAGCCCGGTATTGTTATTTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGC
CTGCTGCCTTCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCT
CCGTCACCC
Found at i:4280781 original size:234 final size:234
Alignment explanation
Indices: 4280368--4280839 Score: 854
Period size: 234 Copynumber: 2.0 Consensus size: 234
4280358 AGCACGAACG
*
4280368 AGCACCAGTGCACCGACGAGGCCACACCGATTTAAGGGGGCACACTCGGGACACAGGGAACGATT
1 AGCACCAGTGCACCGACGAGGCCACACCGATTTAAGGAGGCACACTCGGGACACAGGGAACGATT
* *
4280433 GTGGTCCACCACGGACCCCAAAGGGCACGAGATGGAGAAGGGACAGCAACACATCAATAATTCCA
66 GTGGTCCACCACGCACCCCAAAGGGCAAGAGATGGAGAAGGGACAGCAACACATCAATAATTCCA
*
4280498 TCTGGCTTAGGTACGCAACACAGGATCCCGATCGCATCCCCTGGGTTCAATTAGAACAAGGGGAG
131 TCTGGCTTAGGTACGCAACACAGGATCCCGATCGCATCCCCTAGGTTCAATTAGAACAAGGGGAG
*
4280563 TTAATGAAGAGGAGTGCGGCTCGACAGTTCGATGCGAGT
196 TTAATCAAGAGGAGTGCGGCTCGACAGTTCGATGCGAGT
* *
4280602 AGCACCAGTGCACCGACGAGGCCACACCGATTTAAGGAGGCATACTCGGGACACAGGGCACGATT
1 AGCACCAGTGCACCGACGAGGCCACACCGATTTAAGGAGGCACACTCGGGACACAGGGAACGATT
*
4280667 GTGGTCCACCACGCACCCCAAAGGGCAAGAGATGGAGAAGGGACGGCAACACATCAATAATTCCA
66 GTGGTCCACCACGCACCCCAAAGGGCAAGAGATGGAGAAGGGACAGCAACACATCAATAATTCCA
4280732 TCTGGCTTAGGTACGCAACACAGGATCCCGATCGCATCCCCTAGGTTCAATTAGAACAAGGGGAG
131 TCTGGCTTAGGTACGCAACACAGGATCCCGATCGCATCCCCTAGGTTCAATTAGAACAAGGGGAG
* *
4280797 TTAATCAAGAGGAGTGTGGCTCGACAGTTCGATGCGGGT
196 TTAATCAAGAGGAGTGCGGCTCGACAGTTCGATGCGAGT
4280836 AGCA
1 AGCA
4280840 TGGAGCCTGC
Statistics
Matches: 228, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
234 228 1.00
ACGTcount: A:0.30, C:0.26, G:0.29, T:0.16
Consensus pattern (234 bp):
AGCACCAGTGCACCGACGAGGCCACACCGATTTAAGGAGGCACACTCGGGACACAGGGAACGATT
GTGGTCCACCACGCACCCCAAAGGGCAAGAGATGGAGAAGGGACAGCAACACATCAATAATTCCA
TCTGGCTTAGGTACGCAACACAGGATCCCGATCGCATCCCCTAGGTTCAATTAGAACAAGGGGAG
TTAATCAAGAGGAGTGCGGCTCGACAGTTCGATGCGAGT
Found at i:4281702 original size:86 final size:86
Alignment explanation
Indices: 4281557--4282163 Score: 884
Period size: 86 Copynumber: 7.1 Consensus size: 86
4281547 CTTTAGCCCG
*
4281557 CACATCCGAGCCACCAGGGTGCCACTGCTGCTCGAGGCACCTGCACATCCAACGTCCTAGGTTAC
1 CACATCCGAGCCACCAGGGTGCCACTGCTGCTCGAGGCACCCGCACATCCAACGTCCTAGGTTAC
4281622 CGATGGTGTCCGAGGCTCCCA
66 CGATGGTGTCCGAGGCTCCCA
4281643 CACATCCGAGCCACCAGGGTGCCACTGCTGCTCGAGGCACCCGCACATCCAACGTCCTAGGTTAC
1 CACATCCGAGCCACCAGGGTGCCACTGCTGCTCGAGGCACCCGCACATCCAACGTCCTAGGTTAC
4281708 CGATGGTGTCCGAGGCTCCCA
66 CGATGGTGTCCGAGGCTCCCA
*
4281729 CACATCCGAGCCACCAGGGGGCCACTGCTGCTCGAGGCACCCGCACATCCAACGTCCTAGGTTAC
1 CACATCCGAGCCACCAGGGTGCCACTGCTGCTCGAGGCACCCGCACATCCAACGTCCTAGGTTAC
4281794 CGATGGTGTCCGAGGCTCCCA
66 CGATGGTGTCCGAGGCTCCCA
*
4281815 CACATCCGAGCCACCAGGGGGCCACTGCTGCTCGAGGCACCCGCACATCCAACGTCCTAGGTTAC
1 CACATCCGAGCCACCAGGGTGCCACTGCTGCTCGAGGCACCCGCACATCCAACGTCCTAGGTTAC
4281880 CGATGGTGTCCGAGGCTCCCA
66 CGATGGTGTCCGAGGCTCCCA
*
4281901 CACATCCGAGCCACCAGGGGGCCACTGCTGCTCGAGGCACCCGCACATCCAACGTCCTAGGTTAC
1 CACATCCGAGCCACCAGGGTGCCACTGCTGCTCGAGGCACCCGCACATCCAACGTCCTAGGTTAC
4281966 CGATGGTGTCCGAGGCTCCCA
66 CGATGGTGTCCGAGGCTCCCA
* * * * * * * * *
4281987 CACATCCAAG-CACCAAGGTGCCAATGCTTCTCGAGACTCCCGCACATCCAA-GCACCAAGG-TG
1 CACATCCGAGCCACCAGGGTGCCACTGCTGCTCGAGGCACCCGCACATCCAACG-TCCTAGGTTA
* *
4282049 CCAATGCTG-CTCGAGGCTCCCA
65 CCGATGGTGTC-CGAGGCTCCCA
* ** * * * * * * *
4282071 CACATCCAAGGTACCAAGGTGCCGA-TGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCGAGGTT
1 CACATCCGAGCCACCAGGGTGCC-ACTGCTGCTCGAGGCACCCGCAC-ATCCAACGTCCTAGGTT
* * *
4282134 GCCGATGGTGTTCGAGGCTCCCG
64 ACCGATGGTGTCCGAGGCTCCCA
4282157 CACATCC
1 CACATCC
4282164 AAGCATCAAG
Statistics
Matches: 488, Mismatches: 25, Indels: 16
0.92 0.05 0.03
Matches are distributed among these distances:
83 1 0.00
84 30 0.06
85 77 0.16
86 380 0.78
ACGTcount: A:0.21, C:0.38, G:0.26, T:0.16
Consensus pattern (86 bp):
CACATCCGAGCCACCAGGGTGCCACTGCTGCTCGAGGCACCCGCACATCCAACGTCCTAGGTTAC
CGATGGTGTCCGAGGCTCCCA
Found at i:4282033 original size:42 final size:42
Alignment explanation
Indices: 4281553--4282453 Score: 395
Period size: 43 Copynumber: 21.2 Consensus size: 42
4281543 TTTTCTTTAG
* * * *
4281553 CCCGCACATCCGAGCCACCAGGGTGCCACTGCTGCTCGAGGCA
1 CCCGCACATCCAAG-CACCAAGGTGCCAATGCTGCTCGAGGCT
* * * * * *
4281596 CCTGCACATCCAA-CGTCCTAGGTTACCGATGGTG-TCCGAGGCT
1 CCCGCACATCCAAGC-ACCAAGG-TGCCAATGCTGCT-CGAGGCT
* * * * *
4281639 CCCACACATCCGAGCCACCAGGGTGCCACTGCTGCTCGAGGCA
1 CCCGCACATCCAAG-CACCAAGGTGCCAATGCTGCTCGAGGCT
* * * * *
4281682 CCCGCACATCCAA-CGTCCTAGGTTACCGATGGTG-TCCGAGGCT
1 CCCGCACATCCAAGC-ACCAAGG-TGCCAATGCTGCT-CGAGGCT
* * * * * *
4281725 CCCACACATCCGAGCCACCAGGGGGCCACTGCTGCTCGAGGCA
1 CCCGCACATCCAAG-CACCAAGGTGCCAATGCTGCTCGAGGCT
* * * * *
4281768 CCCGCACATCCAA-CGTCCTAGGTTACCGATGGTG-TCCGAGGCT
1 CCCGCACATCCAAGC-ACCAAGG-TGCCAATGCTGCT-CGAGGCT
* * * * * *
4281811 CCCACACATCCGAGCCACCAGGGGGCCACTGCTGCTCGAGGCA
1 CCCGCACATCCAAG-CACCAAGGTGCCAATGCTGCTCGAGGCT
* * * * *
4281854 CCCGCACATCCAA-CGTCCTAGGTTACCGATGGTG-TCCGAGGCT
1 CCCGCACATCCAAGC-ACCAAGG-TGCCAATGCTGCT-CGAGGCT
* * * * * *
4281897 CCCACACATCCGAGCCACCAGGGGGCCACTGCTGCTCGAGGCA
1 CCCGCACATCCAAG-CACCAAGGTGCCAATGCTGCTCGAGGCT
* * * * *
4281940 CCCGCACATCCAA-CGTCCTAGGTTACCGATGGTG-TCCGAGGCT
1 CCCGCACATCCAAGC-ACCAAGG-TGCCAATGCTGCT-CGAGGCT
* * *
4281983 CCCACACATCCAAGCACCAAGGTGCCAATGCTTCTCGAGACT
1 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
4282025 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
* * * * *
4282067 CCCACACATCCAAGGTACCAAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCAA-GCACCAAGGTGCCAATGCTGCTCGAGGCT
** * * * *
4282110 CCCGCACGA-CCAAGGGCCGAGGTTGCCGATGGTGTTCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTCGAGGCT
* * * * *
4282153 CCCGCACATCCAAGCATCAAGGTGCCGATGGTGCCCGAGGTT
1 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
* * * * * * *
4282195 CTCGCACGAT-CAAG-GCCTAGGTTGCCAATGGTGCCCAAGGTT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTCGAGGCT
* * * * * * *
4282237 CTCGCACGAT-CAAG-TCCTAGGTTACCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTCGAGGCT
** * * *
4282279 CCCGCACGA-CCAAGGGCCTAGGTGCCAATGGTCCT-GAGGCT
1 CCCGCAC-ATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
* ** * * * *
4282320 CTCGCACGA-CCAAGGGCCTAGGTTG-CAGATGGTGCCCAAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCA-ATGCTGCTCGAGGCT
* *
4282363 CCCGCACATCCAAGCACCAAGGTGCCGATGGC-GCCCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCAAT-GCTGCTCGAGGCT
** * * * *
4282405 CCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
*
4282447 CTCGCAC
1 CCCGCAC
4282454 GACCAAGGGC
Statistics
Matches: 654, Mismatches: 159, Indels: 91
0.72 0.18 0.10
Matches are distributed among these distances:
41 39 0.06
42 261 0.40
43 328 0.50
44 22 0.03
45 4 0.01
ACGTcount: A:0.20, C:0.36, G:0.28, T:0.16
Consensus pattern (42 bp):
CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
Found at i:4282174 original size:85 final size:84
Alignment explanation
Indices: 4281589--4283090 Score: 1077
Period size: 85 Copynumber: 17.7 Consensus size: 84
4281579 CACTGCTGCT
* * * * * * * *
4281589 CGAGGCACCTGCACATCCAACGTCCTAGGTTACCGATGGTGTCCGAGGCTCCCACACATCCGA-G
1 CGAGGCTCCCGCACA-CCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACATCCAAGG
* * * *
4281653 CCACCAGGGTGCC-ACTGCTGCT
65 GC-CTA-GGTGCCGA-TGGTGCC
* * * * * * *
4281675 CGAGGCACCCGCACATCCAACGTCCTAGGTTACCGATGGTGTCCGAGGCTCCCACACATCCGA-G
1 CGAGGCTCCCGCACA-CCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACATCCAAGG
* * * * *
4281739 CCACCAGGGGGCC-ACTGCTGCT
65 GC-CTA-GGTGCCGA-TGGTGCC
* * * * * * *
4281761 CGAGGCACCCGCACATCCAACGTCCTAGGTTACCGATGGTGTCCGAGGCTCCCACACATCCGA-G
1 CGAGGCTCCCGCACA-CCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACATCCAAGG
* * * * *
4281825 CCACCAGGGGGCC-ACTGCTGCT
65 GC-CTA-GGTGCCGA-TGGTGCC
* * * * * * *
4281847 CGAGGCACCCGCACATCCAACGTCCTAGGTTACCGATGGTGTCCGAGGCTCCCACACATCCGA-G
1 CGAGGCTCCCGCACA-CCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACATCCAAGG
* * * * *
4281911 CCACCAGGGGGCC-ACTGCTGCT
65 GC-CTA-GGTGCCGA-TGGTGCC
* * * * * * *
4281933 CGAGGCACCCGCACATCCAACGTCCTAGGTTACCGATGGTGTCCGAGGCTCCCACACATCCAAGC
1 CGAGGCTCCCGCACA-CCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACATCCAAGG
* * * * * *
4281998 ACCAAGGTGCCAATGCTTCT
65 GCCTAGGTGCCGATGGTGCC
* ** * * * *
4282018 CGAGACTCCCGCACATCCAAGCACCAAGG-TGCCAATGCT-GCTCGAGGCTCCCACACATCCAAG
1 CGAGGCTCCCGCACA-CCAAGGGCCTAGGTTGCCGATGGTGGC-CGAGGCTCCCGCACATCCAAG
* *
4282081 GTACCAAGGTGCCGATGGTGCC
64 G-GCCTAGGTGCCGATGGTGCC
* ** *
4282103 CGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTTCGAGGCTCCCGCACATCCAAGC
1 CGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACATCCAAGG
** *
4282168 ATCAAGGTGCCGATGGTGCC
65 GCCTAGGTGCCGATGGTGCC
* * * * * * * *
4282188 CGAGGTTCTCGCACGATCAA-GGCCTAGGTTGCCAATGGTGCCCAAGGTTCTCGCACGAT-CAA-
1 CGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCAC-ATCCAAG
* *
4282250 GTCCTAGGTTACCGATGGTGCC
64 GGCCTAGG-TGCCGATGGTGCC
* *
4282272 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCAATGGT--CCTGAGGCTCTCGCACGA-CCAA
1 CGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGGCC-GAGGCTCCCGCAC-ATCCAA
*
4282333 GGGCCTAGGTTGCAGATGGTGCC
63 GGGCCTAGG-TGCCGATGGTGCC
* ** * * *
4282356 CAAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGATGGCGCCCGAGGCTCCCGCACGA-CCAAG
1 CGAGGCTCCCGCACA-CCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCAC-ATCCAAG
4282419 GGCCTAGGTGCCGATGGTGCC
64 GGCCTAGGTGCCGATGGTGCC
* * * *
4282440 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCCGAAGCT-CC-TACATGACCAG
1 CGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACAT--CCAA
*
4282503 GGGCCTAGGTGCCGATGGTGGC
63 GGGCCTAGGTGCCGATGGTGCC
* * * * * *
4282525 CGAAGCTCTCGCACAACCAAGCGCCTAGGTTGCCGATGGTGGTCGAGGCTCCCGAACGA-CCAGG
1 CGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCAC-ATCCAAG
*
4282589 GGCCTAGGTTCCGATGGTGCC
64 GGCCTAGGTGCCGATGGTGCC
* * * *
4282610 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCCGAAGCT-CC-TACATGACCAG
1 CGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACAT--CCAA
*
4282673 GGGCCTAGGTGCCGATGGTGGC
63 GGGCCTAGGTGCCGATGGTGCC
* * * * * *
4282695 CGAAGCTCTCGCACAACCAAGCGCCTAGGTTGCCGATGGTGGTCGAGGCTCCCGAACGA-CCAGG
1 CGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCAC-ATCCAAG
*
4282759 GGCCTAGGTTCCGATGGTGCC
64 GGCCTAGGTGCCGATGGTGCC
* * * *
4282780 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCCGAAGCT-CC-TACATGACCAG
1 CGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACAT--CCAA
*
4282843 GGGCCTAGGTGCCGATGGTGGC
63 GGGCCTAGGTGCCGATGGTGCC
* * * * * *
4282865 CGAAGCTCTCGCACAACCAAGCGCCTAGGTTGCCGATGGTGGTCGAGGCTCCCGAACGA-CCAGG
1 CGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCAC-ATCCAAG
*
4282929 GGCCTAGGTTCCGATGGTGCC
64 GGCCTAGGTGCCGATGGTGCC
* * * *
4282950 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGT-GTCGAGGCTCCCGCGCGA-CCAGG
1 CGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCAC-ATCCAAG
4283013 GGCCTAGGTTGCCGATGGTGCC
64 GGCCTAGG-TGCCGATGGTGCC
** * * *
4283035 CGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGGTGGTGCCCGAGGCTCCCGCAC
1 CGAGGCTCCCGCACA-CCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCAC
4283091 GACAAACGTC
Statistics
Matches: 1247, Mismatches: 130, Indels: 79
0.86 0.09 0.05
Matches are distributed among these distances:
82 5 0.00
83 28 0.02
84 228 0.18
85 618 0.50
86 358 0.29
87 7 0.01
88 3 0.00
ACGTcount: A:0.19, C:0.34, G:0.31, T:0.16
Consensus pattern (84 bp):
CGAGGCTCCCGCACACCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACATCCAAGGG
CCTAGGTGCCGATGGTGCC
Found at i:4282176 original size:170 final size:168
Alignment explanation
Indices: 4281612--4283140 Score: 1220
Period size: 170 Copynumber: 9.0 Consensus size: 168
4281602 CATCCAACGT
* * * * *
4281612 CCTAGGTTACCGATGGTGTCCGAGGCTCCCACACATCCGA-GCCACCAGGGTGCC-ACTGCTGCT
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCC-CACATCCAAGGGC-CTA-GGTGCCGA-TGGTGC-
* *
4281675 CGAGGCACCCGCACATCCAA-CGTCCTAGGTTACCGATGGTG-TCCGAGGCTCCCACAC-ATCC-
61 CGAGGCTCCCGCACATCCAAGCG-CCTAGGTTGCCGATGGTGCT-CGAGGCTCCCACACGA-CCA
* * * * * * * * *
4281736 GAGCCACCAGGGGGCC-ACTGCTGCTCGAGGCACCCGCAC-ATCCAACGT
123 GGGGC-CTA-GGTGCCGA-TGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * * *
4281784 CCTAGGTTACCGATGGTGTCCGAGGCTCCCACACATCCGA-GCCACCAGGGGGCC-ACTGCTGCT
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCC-CACATCCAAGGGC-CTA-GGTGCCGA-TGGTGC-
* *
4281847 CGAGGCACCCGCACATCCAA-CGTCCTAGGTTACCGATGGTG-TCCGAGGCTCCCACAC-ATCC-
61 CGAGGCTCCCGCACATCCAAGCG-CCTAGGTTGCCGATGGTGCT-CGAGGCTCCCACACGA-CCA
* * * * * * * * *
4281908 GAGCCACCAGGGGGCC-ACTGCTGCTCGAGGCACCCGCAC-ATCCAACGT
123 GGGGC-CTA-GGTGCCGA-TGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* ** * * * *
4281956 CCTAGGTTACCGATGGTGTCCGAGGCTCCCACACATCCAAGCACCAAGGTGCCAATGCTTCTCGA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCC-CACATCCAAGGGCCTAGGTGCCGATGGTGC-CGA
* * * * * **
4282021 GACTCCCGCACATCCAAGCACCAAGG-TGCCAATGCTGCTCGAGGCTCCCACAC-ATCCAAGGTA
64 GGCTCCCGCACATCCAAGCGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCACACGA-CC-AGGGG
*
4282084 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
127 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *** *
4282126 CCGAGGTTGCCGATGGTGTTCGAGGCTCCCGCACATCCAAGCATCAAGGTGCCGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCC-CACATCCAAGGGCCTAGGTGCCGATGGTG-CCGA
* * * * * * * * * * *
4282191 GGTTCTCGCACGAT-CAAG-GCCTAGGTTGCCAATGGTGCCCAAGGTTCTCGCACGATCA-AGTC
64 GGCTCCCGCAC-ATCCAAGCGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCACACGACCAGGGGC
*
4282253 CTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
128 CTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
4282295 CCTAGG-TGCCAAT-G-GTCCTGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCAGATGGTGCC
1 CCTAGGTTGCCGATGGTGTCC-GAGGCTC-CCCAC-ATCCAAGGGCCTAGG-TGCCGATGGTG-C
* * * * * * *
4282356 CAAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGATGGCGCCCGAGGCTCCCGCACGACCAAGG
61 CGAGGCTCCCGCACATCCAAGCGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCACACGACCAGGG
*
4282420 GCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
126 GCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
4282463 CCTAGGTTGCCGATGGTGGCCGAAGCT-CCTACATGACCAGGGGCCTAGGTGCCGATGGTGGCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCCACAT--CCAAGGGCCTAGGTGCCGATGGT-GCCG
* * * *
4282527 AAGCTCTCGCACAACCAAGCGCCTAGGTTGCCGATGGTGGTCGAGGCTCCCGA-ACGACCAGGGG
63 AGGCTCCCGCACATCCAAGCGCCTAGGTTGCCGATGGTGCTCGAGGCTCCC-ACACGACCAGGGG
* *
4282591 CCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
127 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
4282633 CCTAGGTTGCCGATGGTGGCCGAAGCT-CCTACATGACCAGGGGCCTAGGTGCCGATGGTGGCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCCACAT--CCAAGGGCCTAGGTGCCGATGGT-GCCG
* * * *
4282697 AAGCTCTCGCACAACCAAGCGCCTAGGTTGCCGATGGTGGTCGAGGCTCCCGA-ACGACCAGGGG
63 AGGCTCCCGCACATCCAAGCGCCTAGGTTGCCGATGGTGCTCGAGGCTCCC-ACACGACCAGGGG
* *
4282761 CCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
127 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
4282803 CCTAGGTTGCCGATGGTGGCCGAAGCT-CCTACATGACCAGGGGCCTAGGTGCCGATGGTGGCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCCACAT--CCAAGGGCCTAGGTGCCGATGGT-GCCG
* * * *
4282867 AAGCTCTCGCACAACCAAGCGCCTAGGTTGCCGATGGTGGTCGAGGCTCCCGA-ACGACCAGGGG
63 AGGCTCCCGCACATCCAAGCGCCTAGGTTGCCGATGGTGCTCGAGGCTCCC-ACACGACCAGGGG
* *
4282931 CCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
127 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
4282973 CCTAGGTTGCCGATGGTGT-CGAGGCTCCCGCGCGA-CCAGGGGCCTAGGTTGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCC-CAC-ATCCAAGGGCCTAGG-TGCCGATGGTG-CC
* * * * * * ** *
4283036 GAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGGTGGTGCCCGAGGCTCCCGCACGACAAACGT
62 GAGGCTCCCGCACATCCAAGCGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCACACGACCAGGGG
* * * * *
4283100 CCTAGGTTGCCGATGGCGTCCAAGGCTCCAGCACGTCCAAG
127 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
4283141 CAGCAATATG
Statistics
Matches: 1205, Mismatches: 116, Indels: 74
0.86 0.08 0.05
Matches are distributed among these distances:
166 3 0.00
167 23 0.02
168 109 0.09
169 150 0.12
170 655 0.54
171 47 0.04
172 217 0.18
173 1 0.00
ACGTcount: A:0.19, C:0.34, G:0.31, T:0.16
Consensus pattern (168 bp):
CCTAGGTTGCCGATGGTGTCCGAGGCTCCCCACATCCAAGGGCCTAGGTGCCGATGGTGCCGAGG
CTCCCGCACATCCAAGCGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCACACGACCAGGGGCCTA
GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:4282454 original size:42 final size:43
Alignment explanation
Indices: 4281933--4283140 Score: 1152
Period size: 42 Copynumber: 28.5 Consensus size: 43
4281923 CACTGCTGCT
* * * * *
4281933 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTACCGATGGTGTC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * * * * *
4281976 CGAGGCTCCCACAC-ATCCAAGCACCAAGG-TGCCAATGCTTCT
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * * * *
4282018 CGAGACTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCT
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
4282060 CGAGGCTCCCACAC-ATCCAAGGTACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCC
* **
4282103 CGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*** *
4282146 CGAGGCTCCCGCAC-ATCCAAGCATCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
4282188 CGAGGTTCTCGCACGATCAA-GGCCTAGGTTGCCAATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * * *
4282230 CAAGGTTCTCGCACGATCAA-GTCCTAGGTTACCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*
4282272 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCAATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
4282313 TGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCAGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * *
4282356 CAAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGCGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
4282398 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
4282440 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * * *
4282483 CGAAGCTCCTACATGACCAGGGGCCTAGG-TGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * **
4282525 CGAAGCTCTCGCACAACCAAGCGCCTAGGTTGCCGATGGTGGT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
4282568 CGAGGCTCCCGAACGACCAGGGGCCTAGGTT-CCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
4282610 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * * *
4282653 CGAAGCTCCTACATGACCAGGGGCCTAGG-TGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * **
4282695 CGAAGCTCTCGCACAACCAAGCGCCTAGGTTGCCGATGGTGGT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
4282738 CGAGGCTCCCGAACGACCAGGGGCCTAGGTT-CCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
4282780 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * * *
4282823 CGAAGCTCCTACATGACCAGGGGCCTAGG-TGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * **
4282865 CGAAGCTCTCGCACAACCAAGCGCCTAGGTTGCCGATGGTGGT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
4282908 CGAGGCTCCCGAACGACCAGGGGCCTAGGTT-CCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
4282950 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-T
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
4282992 CGAGGCTCCCGCGCGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
** * *
4283035 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGGTGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
4283077 CGAGGCTCCCGCACGACAAACGTCCTAGGTTGCCGATGGCGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
4283120 CAAGGCTCCAGCACGTCCAAG
1 CGAGGCTCCCGCACGACCAAG
4283141 CAGCAATATG
Statistics
Matches: 972, Mismatches: 171, Indels: 44
0.82 0.14 0.04
Matches are distributed among these distances:
41 33 0.03
42 543 0.56
43 395 0.41
44 1 0.00
ACGTcount: A:0.19, C:0.33, G:0.32, T:0.16
Consensus pattern (43 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
Found at i:4283142 original size:85 final size:86
Alignment explanation
Indices: 4282090--4283141 Score: 1199
Period size: 85 Copynumber: 12.4 Consensus size: 86
4282080 GGTACCAAGG
* * * **
4282090 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTTCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGCGCCTAGGTTGCCGATGGTGGCCGAGGCTCC
* *** *
4282155 CGCAC-ATCCAAGCATCAAGG-
66 CGCACGA-CCAGGGGCCTAGGT
* * * * * * *
4282175 TGCCGATGGTGCCCGAGGTTCTCGCACGATCAAG-GCCTAGGTTGCCAATGGTGCCCAAGGTTCT
1 TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGCGCCTAGGTTGCCGATGGTGGCCGAGGCTCC
* * *
4282239 CGCACGATCA-AGTCCTAGGT
66 CGCACGACCAGGGGCCTAGGT
* * * *
4282259 TACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCAATGGT--CCTGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGCGCCTAGGTTGCCGATGGTGGCC-GAGGCTC
* *
4282321 TCGCACGACCAAGGGCCTAGGT
65 CCGCACGACCAGGGGCCTAGGT
* * * * * * *
4282343 TGCAGATGGTGCCCAAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGCGCCCGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGCGCCTAGGTTGCCGATGGTGGCCGAGGCTC
*
4282406 CCGCACGACCAAGGGCCTAGG-
65 CCGCACGACCAGGGGCCTAGGT
* *
4282427 TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCCGAAGCTCC
1 TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGCGCCTAGGTTGCCGATGGTGGCCGAGGCTCC
** *
4282492 TACATGACCAGGGGCCTAGG-
66 CGCACGACCAGGGGCCTAGGT
* * * *
4282512 TGCCGATGGTGGCCGAAGCTCTCGCACAACCAAGCGCCTAGGTTGCCGATGGTGGTCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGCGCCTAGGTTGCCGATGGTGGCCGAGGCTCC
*
4282577 CGAACGACCAGGGGCCTAGGT
66 CGCACGACCAGGGGCCTAGGT
* *
4282598 T-CCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCCGAAGCTCC
1 TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGCGCCTAGGTTGCCGATGGTGGCCGAGGCTCC
** *
4282662 TACATGACCAGGGGCCTAGG-
66 CGCACGACCAGGGGCCTAGGT
* * * *
4282682 TGCCGATGGTGGCCGAAGCTCTCGCACAACCAAGCGCCTAGGTTGCCGATGGTGGTCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGCGCCTAGGTTGCCGATGGTGGCCGAGGCTCC
*
4282747 CGAACGACCAGGGGCCTAGGT
66 CGCACGACCAGGGGCCTAGGT
* *
4282768 T-CCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCCGAAGCTCC
1 TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGCGCCTAGGTTGCCGATGGTGGCCGAGGCTCC
** *
4282832 TACATGACCAGGGGCCTAGG-
66 CGCACGACCAGGGGCCTAGGT
* * * *
4282852 TGCCGATGGTGGCCGAAGCTCTCGCACAACCAAGCGCCTAGGTTGCCGATGGTGGTCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGCGCCTAGGTTGCCGATGGTGGCCGAGGCTCC
*
4282917 CGAACGACCAGGGGCCTAGGT
66 CGCACGACCAGGGGCCTAGGT
* *
4282938 T-CCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGT-GTCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGCGCCTAGGTTGCCGATGGTGGCCGAGGCTCC
*
4283001 CGCGCGACCAGGGGCCTAGGT
66 CGCACGACCAGGGGCCTAGGT
* * * * *
4283022 TGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGGTGGTGCCCGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGCGCCTAGGTTGCCGATGGTGGCCGAGGCTC
* ** *
4283085 CCGCACGACAAACGTCCTAGGT
65 CCGCACGACCAGGGGCCTAGGT
* * * *
4283107 TGCCGATGGCGTCCAAGGCTC-CAGCACGTCCAAGC
1 TGCCGATGGTGCCCGAGGCTCTC-GCACGACCAAGC
4283142 AGCAATATGC
Statistics
Matches: 828, Mismatches: 119, Indels: 40
0.84 0.12 0.04
Matches are distributed among these distances:
82 2 0.00
83 20 0.02
84 198 0.24
85 603 0.73
86 5 0.01
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.16
Consensus pattern (86 bp):
TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGCGCCTAGGTTGCCGATGGTGGCCGAGGCTCC
CGCACGACCAGGGGCCTAGGT
Found at i:4283463 original size:63 final size:62
Alignment explanation
Indices: 4283362--4283486 Score: 196
Period size: 63 Copynumber: 2.0 Consensus size: 62
4283352 CGGGAACCTA
*
4283362 ACCGGCGATGGGGGCACCGACGTCTGGGCATGAAATGGGCGTGGGCAGTGCCCTGGACAACC
1 ACCGGCGATGGGGGCACCGACGTCTGGGCATGAAATGGGCATGGGCAGTGCCCTGGACAACC
* ** *
4283424 ACCGGCGCTGGGGGGCACCGACGTCTGGGCATGCGATGGGCATGGGCAGTGCCCTGGATAACC
1 ACCGGCGAT-GGGGGCACCGACGTCTGGGCATGAAATGGGCATGGGCAGTGCCCTGGACAACC
4283487 CCTGGCTGCT
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
62 8 0.14
63 49 0.86
ACGTcount: A:0.18, C:0.28, G:0.41, T:0.14
Consensus pattern (62 bp):
ACCGGCGATGGGGGCACCGACGTCTGGGCATGAAATGGGCATGGGCAGTGCCCTGGACAACC
Found at i:4283910 original size:58 final size:59
Alignment explanation
Indices: 4283813--4283933 Score: 172
Period size: 58 Copynumber: 2.1 Consensus size: 59
4283803 GGGAGGGACA
* * *
4283813 GGGACGATTCATTCATTGTTGGGTACCGGACTTGCAACGGTATCCAAATCCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCAAATCCTACCTTTT
* * * *
4283871 GGGACGATTCATTCATTATTGGGTACTGAACATGTAACGGTATCCGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCAAATCCTACCTTTT
4283930 GGGA
1 GGGA
4283934 TTGGGGAGGG
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
58 48 0.87
59 7 0.13
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCAAATCCTACCTTTT
Found at i:4284606 original size:10 final size:10
Alignment explanation
Indices: 4284593--4284626 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
4284583 CAAGAAGTAT
*
4284593 GGCATGGCAT
1 GGCATGGCAC
4284603 GGCATGGCAC
1 GGCATGGCAC
*
4284613 GGCACGGCAC
1 GGCATGGCAC
4284623 GGCA
1 GGCA
4284627 GAAAATTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.21, C:0.29, G:0.41, T:0.09
Consensus pattern (10 bp):
GGCATGGCAC
Found at i:4284707 original size:38 final size:38
Alignment explanation
Indices: 4284665--4284740 Score: 116
Period size: 38 Copynumber: 2.0 Consensus size: 38
4284655 ACACTTGGGA
*
4284665 GCTCGCACCCGCACCACCACCGCCCCCACTGTGCCATG
1 GCTCGCACCCGCACCACCACCGCCACCACTGTGCCATG
* **
4284703 GCTCGCACCCGCACCACCACGGCCACCGTTGTGCCATG
1 GCTCGCACCCGCACCACCACCGCCACCACTGTGCCATG
4284741 TTTCCCGGGG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.16, C:0.51, G:0.21, T:0.12
Consensus pattern (38 bp):
GCTCGCACCCGCACCACCACCGCCACCACTGTGCCATG
Found at i:4285099 original size:72 final size:72
Alignment explanation
Indices: 4284982--4285124 Score: 232
Period size: 72 Copynumber: 2.0 Consensus size: 72
4284972 CCGCCGCTCT
4284982 GTGGGAATTACGCTCCAAGGAGGCACCCACGACTTGTCCACCGCGGTCGCTGCACCTACGACACG
1 GTGGGAATTACGCTCCAAGGAGGCACCCACGACTTGTCCACCGCGGTCGCTGCACCTACGACACG
4285047 TGCCCTC
66 TGCCCTC
** * ** *
4285054 GTGGGAATTACGCTCTGAGGAGGCGCCCGTGACTTGTCCGCCGCGGTCGCTGCACCTACGACACG
1 GTGGGAATTACGCTCCAAGGAGGCACCCACGACTTGTCCACCGCGGTCGCTGCACCTACGACACG
4285119 TGCCCT
66 TGCCCT
4285125 TGGGGGCCAA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 65 1.00
ACGTcount: A:0.17, C:0.36, G:0.29, T:0.18
Consensus pattern (72 bp):
GTGGGAATTACGCTCCAAGGAGGCACCCACGACTTGTCCACCGCGGTCGCTGCACCTACGACACG
TGCCCTC
Found at i:4286232 original size:46 final size:44
Alignment explanation
Indices: 4286173--4286306 Score: 142
Period size: 46 Copynumber: 3.0 Consensus size: 44
4286163 ACAGGACAGA
* *
4286173 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAA-ATGGCATTGGAG
* * *
4286219 ACAGGATTGAGCCATGTAAGTCCATATTATAAATGTCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAAATGGCATTGGAG
* ** * *
4286263 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-A-ATGGCATTGG
4286307 CAGGGTATTG
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
44 34 0.47
45 3 0.04
46 36 0.49
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAAATGGCATTGGAG
Found at i:4286279 original size:44 final size:46
Alignment explanation
Indices: 4286173--4286287 Score: 135
Period size: 44 Copynumber: 2.5 Consensus size: 46
4286163 ACAGGACAGA
* * *
4286173 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATAAGCCATGTAAGTCCATATTAGAAATATGGCATTGGAG
* * * *
4286219 ACAGGATTGAGCCATGTAAGTCCATATTA-TAA-ATGTCATTGGAG
1 ACAGGAATAAGCCATGTAAGTCCATATTAGAAATATGGCATTGGAG
**
4286263 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATAAGCCATGTAAGTCCAT
4286288 GTCAAAGACA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
44 31 0.52
45 2 0.03
46 27 0.45
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.28
Consensus pattern (46 bp):
ACAGGAATAAGCCATGTAAGTCCATATTAGAAATATGGCATTGGAG
Found at i:4291350 original size:5 final size:5
Alignment explanation
Indices: 4291340--4291411 Score: 64
Period size: 5 Copynumber: 14.8 Consensus size: 5
4291330 TGTTAAAAAA
* *
4291340 ATATT ATATT ATAGTA ATGATT ATGTT -T-TT ATATT ATATT ATCATT
1 ATATT ATATT ATA-TT AT-ATT ATATT ATATT ATATT ATATT AT-ATT
4291386 A-A-T ATATT ATATT ATATT ATA-T ATAT
1 ATATT ATATT ATATT ATATT ATATT ATAT
4291412 ACATAAAACA
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
3 4 0.07
4 8 0.14
5 33 0.59
6 10 0.18
7 1 0.02
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.56
Consensus pattern (5 bp):
ATATT
Found at i:4291393 original size:19 final size:19
Alignment explanation
Indices: 4291369--4291411 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
4291359 ATTATGTTTT
4291369 TATATTATATTATCATTA-A
1 TATATTATATTAT-ATTATA
4291388 TATATTATATTATATTATA
1 TATATTATATTATATTATA
4291407 TATAT
1 TATAT
4291412 ACATAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (19 bp):
TATATTATATTATATTATA
Found at i:4291443 original size:17 final size:17
Alignment explanation
Indices: 4291421--4291454 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
4291411 TACATAAAAC
*
4291421 AAAAGAAAGAATAGAAA
1 AAAAGAAAGAAAAGAAA
4291438 AAAAGAAAGAAAAGAAA
1 AAAAGAAAGAAAAGAAA
4291455 CAGAATAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (17 bp):
AAAAGAAAGAAAAGAAA
Found at i:4291450 original size:9 final size:9
Alignment explanation
Indices: 4291421--4291454 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
4291411 TACATAAAAC
4291421 AAAAGAAAG
1 AAAAGAAAG
*
4291430 AATAGAAA-
1 AAAAGAAAG
4291438 AAAAGAAAG
1 AAAAGAAAG
4291447 AAAAGAAA
1 AAAAGAAA
4291455 CAGAATAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (9 bp):
AAAAGAAAG
Found at i:4292475 original size:46 final size:44
Alignment explanation
Indices: 4292416--4292530 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
4292406 ACAAGACAGA
* *
4292416 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
4292462 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
4292506 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
4292531 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:4292511 original size:44 final size:45
Alignment explanation
Indices: 4292416--4292549 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
4292406 ACAAGACAGA
* *
4292416 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
4292462 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
4292506 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
4292550 CAGGGTATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:4302637 original size:6 final size:6
Alignment explanation
Indices: 4302626--4302653 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
4302616 TTTGCTCACT
4302626 GAAACA GAAACA GAAACA GAAACA GAAA
1 GAAACA GAAACA GAAACA GAAACA GAAA
4302654 TGGCTCTCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.68, C:0.14, G:0.18, T:0.00
Consensus pattern (6 bp):
GAAACA
Found at i:4303939 original size:20 final size:20
Alignment explanation
Indices: 4303908--4303945 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
4303898 TATGAATAGC
4303908 ATTTGAATTTGATTATTTGTT
1 ATTTGAATTTGATT-TTTGTT
4303929 ATTTG-ATTTGATTTTTG
1 ATTTGAATTTGATTTTTG
4303946 AAGGGTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 8 0.47
21 5 0.29
ACGTcount: A:0.21, C:0.00, G:0.16, T:0.63
Consensus pattern (20 bp):
ATTTGAATTTGATTTTTGTT
Found at i:4304402 original size:39 final size:39
Alignment explanation
Indices: 4304359--4304437 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
4304349 ACCTTACTCC
4304359 TATTGGATCTACAGACTCAGACTTCCAAACCTGTAAAGA
1 TATTGGATCTACAGACTCAGACTTCCAAACCTGTAAAGA
*
4304398 TATTGGATCTACAGACTCAGCCTTCCAAACCTGTAAAGA
1 TATTGGATCTACAGACTCAGACTTCCAAACCTGTAAAGA
4304437 T
1 T
4304438 TTAAGGAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (39 bp):
TATTGGATCTACAGACTCAGACTTCCAAACCTGTAAAGA
Found at i:4306672 original size:17 final size:17
Alignment explanation
Indices: 4306650--4306691 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
4306640 AGTGAGTATC
4306650 TTAATATTAAATTTAAT
1 TTAATATTAAATTTAAT
*
4306667 TTAATATGAAATTTAAT
1 TTAATATTAAATTTAAT
*
4306684 CTAATATT
1 TTAATATT
4306692 TATTTCGATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (17 bp):
TTAATATTAAATTTAAT
Found at i:4312052 original size:15 final size:16
Alignment explanation
Indices: 4312015--4312054 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
4312005 TACCAAAATT
*
4312015 GTTAATTAAGCTTAAG
1 GTTAATTAAACTTAAG
*
4312031 TTTAATTAAACTT-AG
1 GTTAATTAAACTTAAG
4312046 GTTAATTAA
1 GTTAATTAA
4312055 GTTAATTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.42
Consensus pattern (16 bp):
GTTAATTAAACTTAAG
Found at i:4314720 original size:35 final size:35
Alignment explanation
Indices: 4314643--4314736 Score: 111
Period size: 35 Copynumber: 2.7 Consensus size: 35
4314633 GTTTGTACCT
* *
4314643 AGCACTAGTCAGATAAACC-A-AAAAATGTGTGCCC
1 AGCACTAGTCAGATAAACCGACGAAAGT-TGTGCCC
*
4314677 AGCACTAGTCAGATAAACTGACGAAAGTTGTGCCC
1 AGCACTAGTCAGATAAACCGACGAAAGTTGTGCCC
* **
4314712 AGCGCTAGTTGGATAAACCGACGAA
1 AGCACTAGTCAGATAAACCGACGAA
4314737 TAATAAGTGA
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
34 18 0.35
35 29 0.57
36 4 0.08
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.18
Consensus pattern (35 bp):
AGCACTAGTCAGATAAACCGACGAAAGTTGTGCCC
Found at i:4314888 original size:74 final size:75
Alignment explanation
Indices: 4314715--4314888 Score: 208
Period size: 74 Copynumber: 2.3 Consensus size: 75
4314705 TGTGCCCAGC
* * * *
4314715 GCTAGTTGGATAAACCGACGAAT-AATAAGTGAGCTTAGCTTTAGTTGGATATACCAAAGGTATT
1 GCTAGTTGGATAAACCGACGAATAAATAAGTAAGCCTAGCTCTAGTTGGATATACCAAAGATATT
**
4314779 TGCACCCAGT
66 TGCACCCACA
* * * *
4314789 GCTAGTTGGATAAGCCAACGAATAAAT-AGTAAGCCTAGCTCTAGTTGGATTTACCAACGATATT
1 GCTAGTTGGATAAACCGACGAATAAATAAGTAAGCCTAGCTCTAGTTGGATATACCAAAGATATT
*
4314853 TGCGCCCACA
66 TGCACCCACA
* * *
4314863 GGTAGTCGGATAAACTGACGAATAAA
1 GCTAGTTGGATAAACCGACGAATAAA
4314889 CAGTTATTTA
Statistics
Matches: 83, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
74 80 0.96
75 3 0.04
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (75 bp):
GCTAGTTGGATAAACCGACGAATAAATAAGTAAGCCTAGCTCTAGTTGGATATACCAAAGATATT
TGCACCCACA
Found at i:4319778 original size:116 final size:115
Alignment explanation
Indices: 4319638--4319861 Score: 412
Period size: 116 Copynumber: 1.9 Consensus size: 115
4319628 AATTTTTAAT
*
4319638 AGAATGGTCAATTTACTCTTTGATCTAACGTATAGACACTAATTTTAAATACCTTACATACATTA
1 AGAATGGTCAATTTACTCTTTGATCGAACGTATAGACACTAATTTTAAATACCTTACATACATTA
4319703 TACACAATATAATTCATATAAATTCTAAATACTTTTTGAGCAATTAATAAC
66 TACACAATATAATTCATATAAATTCTAAATACTTTTTG-GCAATTAATAAC
*
4319754 AGAATGGTCAATTTACTTTTTGATCGAACGTATAGACACTAATTTTAAATACCTTACATACATTA
1 AGAATGGTCAATTTACTCTTTGATCGAACGTATAGACACTAATTTTAAATACCTTACATACATTA
*
4319819 TACGCAATATAATTCATATAAATTCTAAATACTTTTTGGCAAT
66 TACACAATATAATTCATATAAATTCTAAATACTTTTTGGCAAT
4319862 ATAAGTAGTT
Statistics
Matches: 105, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
115 5 0.05
116 100 0.95
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.38
Consensus pattern (115 bp):
AGAATGGTCAATTTACTCTTTGATCGAACGTATAGACACTAATTTTAAATACCTTACATACATTA
TACACAATATAATTCATATAAATTCTAAATACTTTTTGGCAATTAATAAC
Found at i:4320191 original size:15 final size:15
Alignment explanation
Indices: 4320167--4320217 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
4320157 ATAGAAAATT
4320167 TAAT-TTAAAATAAA
1 TAATATTAAAATAAA
4320181 T-ATAATTAAAA-AAA
1 TAAT-ATTAAAATAAA
*
4320195 GTAATATAAAAATAAA
1 -TAATATTAAAATAAA
4320211 TAATATT
1 TAATATT
4320218 TATCTTAACA
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
13 2 0.07
14 4 0.13
15 19 0.63
16 5 0.17
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (15 bp):
TAATATTAAAATAAA
Found at i:4320291 original size:18 final size:18
Alignment explanation
Indices: 4320260--4320294 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
4320250 GATAAATGGA
**
4320260 TAAATTTATTAAGCAATT
1 TAAATTTAAAAAGCAATT
4320278 TAAATTTAAAAAGCAAT
1 TAAATTTAAAAAGCAAT
4320295 AGATAAATTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.06, G:0.06, T:0.37
Consensus pattern (18 bp):
TAAATTTAAAAAGCAATT
Found at i:4323152 original size:18 final size:18
Alignment explanation
Indices: 4323129--4323165 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
4323119 GTTAGATAAA
4323129 GATAGAATTGGAAAAAGG
1 GATAGAATTGGAAAAAGG
4323147 GATAGAATTGGAAAAAGG
1 GATAGAATTGGAAAAAGG
4323165 G
1 G
4323166 TGATTTCTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.49, C:0.00, G:0.35, T:0.16
Consensus pattern (18 bp):
GATAGAATTGGAAAAAGG
Found at i:4324249 original size:13 final size:13
Alignment explanation
Indices: 4324231--4324257 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
4324221 AAAGCACGAT
4324231 ATAGAAGGTGCAA
1 ATAGAAGGTGCAA
4324244 ATAGAAGGTGCAA
1 ATAGAAGGTGCAA
4324257 A
1 A
4324258 AATAATTTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.07, G:0.30, T:0.15
Consensus pattern (13 bp):
ATAGAAGGTGCAA
Found at i:4333452 original size:12 final size:12
Alignment explanation
Indices: 4333435--4333460 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
4333425 ACATCATCGT
4333435 GCAAGGTGGGAA
1 GCAAGGTGGGAA
4333447 GCAAGGTGGGAA
1 GCAAGGTGGGAA
4333459 GC
1 GC
4333461 GATTAACAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.12, G:0.50, T:0.08
Consensus pattern (12 bp):
GCAAGGTGGGAA
Found at i:4336112 original size:32 final size:32
Alignment explanation
Indices: 4336072--4336137 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
4336062 TTGAGATATA
*
4336072 AAACCTTAATTAATTTGTAAAGGTTTTTAGTT
1 AAACCTTAATTAATTTGTAAAGGGTTTTAGTT
4336104 AAACCTTAATTAATTTGTAAAGGGTTTTAGTT
1 AAACCTTAATTAATTTGTAAAGGGTTTTAGTT
4336136 AA
1 AA
4336138 GTCATAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.36, C:0.06, G:0.14, T:0.44
Consensus pattern (32 bp):
AAACCTTAATTAATTTGTAAAGGGTTTTAGTT
Found at i:4341742 original size:66 final size:66
Alignment explanation
Indices: 4341605--4341745 Score: 212
Period size: 66 Copynumber: 2.1 Consensus size: 66
4341595 GCGGGACATG
* * * *
4341605 TTTGGTGTGTTGGAGAGTGTTAGCTTTATGCTTCACTTTTTGGGATATGTTTGACTGTATGAGTC
1 TTTGGTGTGTTGGAGAGTGTTAGCTTTATGCTTCACTTTATGGGACATGTCTGACTCTATGAGTC
4341670 A
66 A
* *
4341671 ATTGGTGTGTTGGAGAGTGTTAGTTTTATGCTTCAC-TTATGGGACATGTCTGACTCTATGAGTC
1 TTTGGTGTGTTGGAGAGTGTTAGCTTTATGCTTCACTTTATGGGACATGTCTGACTCTATGAGTC
4341735 TA
66 -A
4341737 TTTGGTGTG
1 TTTGGTGTG
4341746 ATGAAGATCT
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
65 24 0.36
66 43 0.64
ACGTcount: A:0.17, C:0.10, G:0.29, T:0.44
Consensus pattern (66 bp):
TTTGGTGTGTTGGAGAGTGTTAGCTTTATGCTTCACTTTATGGGACATGTCTGACTCTATGAGTC
A
Found at i:4344163 original size:18 final size:18
Alignment explanation
Indices: 4344135--4344178 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
4344125 CACCTTTCAC
4344135 CAATAAATTTCAAAAAGTT
1 CAAT-AATTTCAAAAAGTT
**
4344154 CAATAATTTCAAAACTTT
1 CAATAATTTCAAAAAGTT
4344172 CAATAAT
1 CAATAAT
4344179 AGAAAATAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.50, C:0.14, G:0.02, T:0.34
Consensus pattern (18 bp):
CAATAATTTCAAAAAGTT
Found at i:4346648 original size:23 final size:22
Alignment explanation
Indices: 4346612--4346671 Score: 63
Period size: 23 Copynumber: 2.8 Consensus size: 22
4346602 TTCAAAGATG
4346612 TGTAATCTT--AGATATGA-TA
1 TGTAATCTTAGAGATATGATTA
* *
4346631 TGTAATCTTTAGAAGATACGATTC
1 TGTAATC-TTAG-AGATATGATTA
4346655 TGTAATCTTAGAGATAT
1 TGTAATCTTAGAGATAT
4346672 AATTTTTAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
19 7 0.21
20 2 0.06
22 5 0.15
23 11 0.33
24 8 0.24
ACGTcount: A:0.35, C:0.08, G:0.17, T:0.40
Consensus pattern (22 bp):
TGTAATCTTAGAGATATGATTA
Found at i:4356241 original size:18 final size:17
Alignment explanation
Indices: 4356220--4356276 Score: 53
Period size: 18 Copynumber: 3.4 Consensus size: 17
4356210 TAAAAGGTTT
4356220 AAATAAGTAAAAAAATGA
1 AAATAAGTAAAAAAAT-A
* *
4356238 AAATAAGCAAATAAATA
1 AAATAAGTAAAAAAATA
* * *
4356255 AAAGAA-TAAAAATATT
1 AAATAAGTAAAAAAATA
4356271 AAATAA
1 AAATAA
4356277 AACAAATTAA
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
16 11 0.35
17 6 0.19
18 14 0.45
ACGTcount: A:0.72, C:0.02, G:0.07, T:0.19
Consensus pattern (17 bp):
AAATAAGTAAAAAAATA
Found at i:4356305 original size:3 final size:3
Alignment explanation
Indices: 4356297--4356371 Score: 60
Period size: 3 Copynumber: 25.0 Consensus size: 3
4356287 AAGGGGTAAG
* * * * * *
4356297 AAT AAT AAT AAT AGT AAT GAT AAT AAT AAC ATT AAT AAC GAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
4356345 AAT AAT GAT TAT GAT ATT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
4356372 GTATAAAAAA
Statistics
Matches: 54, Mismatches: 18, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.56, C:0.03, G:0.07, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:4356323 original size:21 final size:21
Alignment explanation
Indices: 4356297--4356371 Score: 80
Period size: 21 Copynumber: 3.6 Consensus size: 21
4356287 AAGGGGTAAG
4356297 AATAATAATAATAGTAATGAT
1 AATAATAATAATAGTAATGAT
* * * *
4356318 AATAATAACATTAATAACGAT
1 AATAATAATAATAGTAATGAT
*
4356339 AATAATAATAAT-GATTATGAT
1 AATAATAATAATAG-TAATGAT
*
4356360 ATTAATAATAAT
1 AATAATAATAAT
4356372 GTATAAAAAA
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.56, C:0.03, G:0.07, T:0.35
Consensus pattern (21 bp):
AATAATAATAATAGTAATGAT
Found at i:4360285 original size:40 final size:40
Alignment explanation
Indices: 4360223--4360299 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
4360213 ACGGTACCTT
* *
4360223 TTGGTGTGTAGGGCTGGATGGGTTGATTATATCCCCATAC
1 TTGGTGTGAAGGGCTGGATGGGTCGATTATATCCCCATAC
* * * *
4360263 TTGGTTTGAAGGGTTGGGTGGGTCGATTCTATCCCCA
1 TTGGTGTGAAGGGCTGGATGGGTCGATTATATCCCCA
4360300 CATGGTGTGT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.16, C:0.16, G:0.34, T:0.35
Consensus pattern (40 bp):
TTGGTGTGAAGGGCTGGATGGGTCGATTATATCCCCATAC
Found at i:4378608 original size:56 final size:56
Alignment explanation
Indices: 4378502--4378655 Score: 177
Period size: 56 Copynumber: 2.8 Consensus size: 56
4378492 CCGATCTTAT
* * * * *
4378502 GACCTAAGGCAAACCTTGTTCATGTTTTTTAATAAGTATGTACGAACCAGTCTCT-C
1 GACCTAAGGCAGACCTTGTTCATGTTTTCTGATAAGTATGTGCCAACCAGTCT-TGC
* *
4378558 GACCTAAGGCAGACCTTGTTCATGTTTTCTGATAAGTATGTGCCATCCAGTCTTGT
1 GACCTAAGGCAGACCTTGTTCATGTTTTCTGATAAGTATGTGCCAACCAGTCTTGC
* * * * *
4378614 GACCTAAGGCGGACCTTTTTGA-GTTTCCTGAAAAGTATGTGC
1 GACCTAAGGCAGACCTTGTTCATGTTTTCTGATAAGTATGTGC
4378656 GAGTTGGCTT
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
55 19 0.22
56 66 0.78
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (56 bp):
GACCTAAGGCAGACCTTGTTCATGTTTTCTGATAAGTATGTGCCAACCAGTCTTGC
Found at i:4391589 original size:27 final size:27
Alignment explanation
Indices: 4391559--4391736 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
4391549 ATATTGAGTC
* * * *
4391559 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
4391586 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
4391613 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
4391641 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
4391668 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
4391695 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
4391722 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
4391737 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:4391698 original size:82 final size:81
Alignment explanation
Indices: 4391580--4391735 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
4391570 TGCTATATAA
* *
4391580 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
4391645 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
4391662 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
4391726 CACTTAGTGC
65 CACTTAGTGC
4391736 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:4397546 original size:42 final size:42
Alignment explanation
Indices: 4397487--4397571 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
4397477 CCATTTTAAA
4397487 GTATGTTTTTATATAGCAATAGCATTCAACTGAGCTGATTCC
1 GTATGTTTTTATATAGCAATAGCATTCAACTGAGCTGATTCC
4397529 GTATGTTTTTATATAGCAATAGCATTCAACTGAGCTGATTCC
1 GTATGTTTTTATATAGCAATAGCATTCAACTGAGCTGATTCC
4397571 G
1 G
4397572 ATGAAGTAGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (42 bp):
GTATGTTTTTATATAGCAATAGCATTCAACTGAGCTGATTCC
Found at i:4401059 original size:10 final size:10
Alignment explanation
Indices: 4401002--4401061 Score: 70
Period size: 10 Copynumber: 6.0 Consensus size: 10
4400992 TGAAATTCTA
4401002 AAAGATAAAT
1 AAAGATAAAT
4401012 ACAA-ATAAAT
1 A-AAGATAAAT
* *
4401022 AAAGAGAATT
1 AAAGATAAAT
4401032 AAAGATAAAT
1 AAAGATAAAT
4401042 AAAGATAAAT
1 AAAGATAAAT
4401052 GAAA-ATAAAT
1 -AAAGATAAAT
4401062 CCTAAAATTA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
9 2 0.05
10 36 0.84
11 5 0.12
ACGTcount: A:0.68, C:0.02, G:0.10, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:4403302 original size:96 final size:98
Alignment explanation
Indices: 4403130--4403317 Score: 308
Period size: 96 Copynumber: 1.9 Consensus size: 98
4403120 ATTTTAATTT
* * * *
4403130 TAATTATTTATTTTTACTTAGGAATATATTGAACCTTTTGATGCGAAGAGAGATGATAGCCAAGC
1 TAATTATTTATTTTTACTTAAGAATATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGC
4403195 ACCCCACCCCGGTTACTCAGCCCAACATACTCC
66 ACCCCACCCCGGTTACTCAGCCCAACATACTCC
*
4403228 TAATT-TTTATTTTT-CTTAAGAATATATCGAACCTTTTGACGCGAAGATAGATGACAGCCAAGC
1 TAATTATTTATTTTTACTTAAGAATATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGC
*
4403291 ACCTCACCCCGGTTACTCAGCCCAACA
66 ACCCCACCCCGGTTACTCAGCCCAACA
4403318 CATTCTTAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
96 70 0.83
97 9 0.11
98 5 0.06
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (98 bp):
TAATTATTTATTTTTACTTAAGAATATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGC
ACCCCACCCCGGTTACTCAGCCCAACATACTCC
Found at i:4404098 original size:10 final size:10
Alignment explanation
Indices: 4404064--4404143 Score: 63
Period size: 10 Copynumber: 7.3 Consensus size: 10
4404054 TAATATCTAA
*
4404064 AAATAATAAGT
1 AAATAA-AAAT
*
4404075 AAAAAAATAAT
1 AAATAAA-AAT
4404086 AAATAAAAAT
1 AAATAAAAAT
4404096 AAATAAAAAT
1 AAATAAAAAT
4404106 AAACTCAACTAAACT
1 AAA-T-AA--AAA-T
4404121 AAAATAAAAA-
1 -AAATAAAAAT
4404131 AAATAAAAAT
1 AAATAAAAAT
4404141 AAA
1 AAA
4404144 AATTCGGTTG
Statistics
Matches: 58, Mismatches: 3, Indels: 17
0.74 0.04 0.22
Matches are distributed among these distances:
9 9 0.16
10 20 0.34
11 14 0.24
12 5 0.09
14 5 0.09
15 2 0.03
16 3 0.05
ACGTcount: A:0.75, C:0.05, G:0.01, T:0.19
Consensus pattern (10 bp):
AAATAAAAAT
Found at i:4404139 original size:15 final size:15
Alignment explanation
Indices: 4404062--4404145 Score: 64
Period size: 15 Copynumber: 5.1 Consensus size: 15
4404052 ATTAATATCT
*
4404062 AAAAATAATAAGT-AA
1 AAAAATAA-AAATAAA
4404077 AAAAATAATAAATAAA
1 AAAAATAA-AAATAAA
4404093 AATAAATAAAAATAAA
1 AA-AAATAAAAATAAA
4404109 CTCAACTAAACT-AAAATAAA
1 ---AA--AAA-TAAAAATAAA
4404129 AAAAATAAAAATAAA
1 AAAAATAAAAATAAA
4404144 AA
1 AA
4404146 TTCGGTTGCC
Statistics
Matches: 60, Mismatches: 1, Indels: 16
0.78 0.01 0.21
Matches are distributed among these distances:
14 1 0.02
15 25 0.42
16 11 0.18
17 8 0.13
19 2 0.03
20 12 0.20
21 1 0.02
ACGTcount: A:0.76, C:0.05, G:0.01, T:0.18
Consensus pattern (15 bp):
AAAAATAAAAATAAA
Found at i:4407102 original size:17 final size:18
Alignment explanation
Indices: 4407082--4407115 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
4407072 AAGTGAATTA
4407082 AAATTGC-GAAATTAAAT
1 AAATTGCAGAAATTAAAT
4407099 AAATTGCAGAAATTAAA
1 AAATTGCAGAAATTAAA
4407116 ATGAGGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.56, C:0.06, G:0.12, T:0.26
Consensus pattern (18 bp):
AAATTGCAGAAATTAAAT
Found at i:4407860 original size:20 final size:20
Alignment explanation
Indices: 4407837--4407896 Score: 86
Period size: 20 Copynumber: 3.0 Consensus size: 20
4407827 TGAAATTCTA
*
4407837 AAAGATAAATGCAAATAAAT
1 AAAGATAAATGAAAATAAAT
*
4407857 AAAGAT-AATTAAAGATAAAT
1 AAAGATAAATGAAA-ATAAAT
4407877 AAAGATAAATGAAAATAAAT
1 AAAGATAAATGAAAATAAAT
4407897 CCTAAAATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
19 5 0.14
20 24 0.69
21 6 0.17
ACGTcount: A:0.67, C:0.02, G:0.10, T:0.22
Consensus pattern (20 bp):
AAAGATAAATGAAAATAAAT
Found at i:4407864 original size:10 final size:10
Alignment explanation
Indices: 4407837--4407896 Score: 70
Period size: 10 Copynumber: 6.0 Consensus size: 10
4407827 TGAAATTCTA
4407837 AAAGATAAAT
1 AAAGATAAAT
*
4407847 GCAA-ATAAAT
1 -AAAGATAAAT
*
4407857 AAAGATAATT
1 AAAGATAAAT
4407867 AAAGATAAAT
1 AAAGATAAAT
4407877 AAAGATAAAT
1 AAAGATAAAT
4407887 GAAA-ATAAAT
1 -AAAGATAAAT
4407897 CCTAAAATTA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
9 2 0.05
10 36 0.84
11 5 0.12
ACGTcount: A:0.67, C:0.02, G:0.10, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Done.