Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56482370
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1659275 characters in sequence are not A, C, G, or T
File 23 of 172
Found at i:7300014 original size:40 final size:40
Alignment explanation
Indices: 7299927--7300026 Score: 130
Period size: 40 Copynumber: 2.5 Consensus size: 40
7299917 GAGATTTTGT
* * *
7299927 TCAGTTCTTATGAGCTTCTG-TTGGCGTGTTTCGGGTGGA
1 TCAGCTCTTATGAGCTTCTGTTTGGCGTATTTCGGCTGGA
* * *
7299966 CCAACTCTTATGAGCTTCTGTTTGGCGTATTTCTGCTGGA
1 TCAGCTCTTATGAGCTTCTGTTTGGCGTATTTCGGCTGGA
*
7300006 TCAGCTCTTATGAGTTTCTGT
1 TCAGCTCTTATGAGCTTCTGT
7300027 CTAGTGTGTT
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
39 17 0.33
40 34 0.67
ACGTcount: A:0.13, C:0.19, G:0.26, T:0.42
Consensus pattern (40 bp):
TCAGCTCTTATGAGCTTCTGTTTGGCGTATTTCGGCTGGA
Found at i:7303752 original size:19 final size:19
Alignment explanation
Indices: 7303709--7303754 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
7303699 ACCAAATTAG
*
7303709 TTAAAAAATAAATTGTATT
1 TTAAAAAATAAACTGTATT
** *
7303728 AAAAAAAATAAACTGTTTT
1 TTAAAAAATAAACTGTATT
7303747 TTAAAAAA
1 TTAAAAAA
7303755 AAGAGAGGAG
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (19 bp):
TTAAAAAATAAACTGTATT
Found at i:7305932 original size:90 final size:90
Alignment explanation
Indices: 7305779--7305961 Score: 366
Period size: 90 Copynumber: 2.0 Consensus size: 90
7305769 ATTTCTGATA
7305779 GAGGGAAATGATTAATTGCCGCAATTAGGCGTTTCGGTGTGTCATGAAGATCCGTTTACTGCATC
1 GAGGGAAATGATTAATTGCCGCAATTAGGCGTTTCGGTGTGTCATGAAGATCCGTTTACTGCATC
7305844 CATCACATTGTGACTAACTTCCATT
66 CATCACATTGTGACTAACTTCCATT
7305869 GAGGGAAATGATTAATTGCCGCAATTAGGCGTTTCGGTGTGTCATGAAGATCCGTTTACTGCATC
1 GAGGGAAATGATTAATTGCCGCAATTAGGCGTTTCGGTGTGTCATGAAGATCCGTTTACTGCATC
7305934 CATCACATTGTGACTAACTTCCATT
66 CATCACATTGTGACTAACTTCCATT
7305959 GAG
1 GAG
7305962 ATTATAAAAG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 93 1.00
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.32
Consensus pattern (90 bp):
GAGGGAAATGATTAATTGCCGCAATTAGGCGTTTCGGTGTGTCATGAAGATCCGTTTACTGCATC
CATCACATTGTGACTAACTTCCATT
Found at i:7306298 original size:42 final size:42
Alignment explanation
Indices: 7306239--7306320 Score: 146
Period size: 42 Copynumber: 2.0 Consensus size: 42
7306229 GAATGAAGAA
*
7306239 TTTACTCTAGTCTCTATAATAAAGCAATTTAACATTTACTTT
1 TTTACTCTAATCTCTATAATAAAGCAATTTAACATTTACTTT
*
7306281 TTTACTTTAATCTCTATAATAAAGCAATTTAACATTTACT
1 TTTACTCTAATCTCTATAATAAAGCAATTTAACATTTACT
7306321 GTTACTTATA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.35, C:0.16, G:0.04, T:0.45
Consensus pattern (42 bp):
TTTACTCTAATCTCTATAATAAAGCAATTTAACATTTACTTT
Found at i:7306341 original size:42 final size:41
Alignment explanation
Indices: 7306253--7306343 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 41
7306243 CTCTAGTCTC
* * *
7306253 TATAATAAAGCAATTTAACATTTACTTTTTTACTTTAATCTC
1 TATAATAAAGCAATTTAACATTTAC-TTGTTACTTTAATATA
7306295 TATAATAAAGCAATTTAACATTTAC-TGTTACTTATATATATA
1 TATAATAAAGCAATTTAACATTTACTTGTTACTT-TA-ATATA
7306337 TATAATA
1 TATAATA
7306344 GTATAATGAC
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
40 7 0.16
41 2 0.05
42 35 0.80
ACGTcount: A:0.41, C:0.11, G:0.03, T:0.45
Consensus pattern (41 bp):
TATAATAAAGCAATTTAACATTTACTTGTTACTTTAATATA
Found at i:7306514 original size:8 final size:8
Alignment explanation
Indices: 7306470--7306526 Score: 57
Period size: 8 Copynumber: 7.1 Consensus size: 8
7306460 TTTTTTATTT
*
7306470 TTTTATAA
1 TTTTAAAA
7306478 TTTATAATAA
1 TTT-TAA-AA
7306488 TTTTAAAA
1 TTTTAAAA
7306496 ---TAAATA
1 TTTTAAA-A
7306502 TTTTAAAA
1 TTTTAAAA
7306510 TTTTAAAA
1 TTTTAAAA
7306518 TTTTAAAA
1 TTTTAAAA
7306526 T
1 T
7306527 AATTAATTAA
Statistics
Matches: 42, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
5 4 0.10
6 1 0.02
8 23 0.55
9 9 0.21
10 5 0.12
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (8 bp):
TTTTAAAA
Found at i:7306522 original size:30 final size:32
Alignment explanation
Indices: 7306470--7306528 Score: 95
Period size: 30 Copynumber: 1.9 Consensus size: 32
7306460 TTTTTTATTT
*
7306470 TTTTATAATTTATAATAATTTTAAAATAAATA
1 TTTTAAAATTTATAATAATTTTAAAATAAATA
7306502 TTTTAAAATTT-TAA-AATTTTAAAATAA
1 TTTTAAAATTTATAATAATTTTAAAATAA
7306529 TTAATTAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 13 0.50
31 3 0.12
32 10 0.38
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (32 bp):
TTTTAAAATTTATAATAATTTTAAAATAAATA
Found at i:7308537 original size:11 final size:11
Alignment explanation
Indices: 7308521--7308546 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7308511 GCTGGCCTTT
7308521 TTTTGTATTTA
1 TTTTGTATTTA
7308532 TTTTGTATTTA
1 TTTTGTATTTA
7308543 TTTT
1 TTTT
7308547 TTGGTTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (11 bp):
TTTTGTATTTA
Found at i:7308775 original size:41 final size:41
Alignment explanation
Indices: 7308737--7308979 Score: 249
Period size: 41 Copynumber: 5.9 Consensus size: 41
7308727 CCGAAAAAAA
7308737 GAGAAATAACGGCGTTTTT-TACCCAAACGCCACTAAAAACT-
1 GAGAAATAACGGCGTTTTTGT--CCAAACGCCACTAAAAACTG
** * * * *
7308778 GATCAATAGCAGCGTTTTTATCTAAAACGCCACTAAAAACT-
1 GAGAAATAACGGCGTTTTTGTC-CAAACGCCACTAAAAACTG
* ** *
7308819 AATCAATAACGGCGTTTTTGTCTAAGACGCCACTAAAAACTG
1 GAGAAATAACGGCGTTTTTGTCCAA-ACGCCACTAAAAACTG
* * * ** *
7308861 GAGGAATAGCAGTATTTTTATCCAAACGCCACTAAAAACTG
1 GAGAAATAACGGCGTTTTTGTCCAAACGCCACTAAAAACTG
*
7308902 GAGAAATAACGGTGTTTTTGTCCAAACGCCACTAAAAACTG
1 GAGAAATAACGGCGTTTTTGTCCAAACGCCACTAAAAACTG
* * *
7308943 GAGAAATAGCGGCATTTTTGTCCAAACACCACTAAAA
1 GAGAAATAACGGCGTTTTTGTCCAAACGCCACTAAAA
7308980 TTGATCAATA
Statistics
Matches: 170, Mismatches: 28, Indels: 8
0.83 0.14 0.04
Matches are distributed among these distances:
40 3 0.02
41 150 0.88
42 17 0.10
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.24
Consensus pattern (41 bp):
GAGAAATAACGGCGTTTTTGTCCAAACGCCACTAAAAACTG
Found at i:7308831 original size:82 final size:81
Alignment explanation
Indices: 7308738--7308979 Score: 281
Period size: 82 Copynumber: 2.9 Consensus size: 81
7308728 CGAAAAAAAG
* *
7308738 AGAAATAACGGCGTTTTT-TACCCAAACGCCACTAAAAACTGATCAATAGCAGCGTTTTTATCTA
1 AGAAATAACGGCGTTTTTGT--CCAAACGCCACTAAAAACTGAGCAATAGCAGCATTTTTATC-A
7308802 AAACGCCACTAAAAACT-A
63 AAACGCCACTAAAAACTGA
** * * * *
7308820 ATCAATAACGGCGTTTTTGTCTAAGACGCCACTAAAAACTGGAGGAATAGCAGTATTTTTATCCA
1 AGAAATAACGGCGTTTTTGTCCAA-ACGCCACTAAAAACT-GAGCAATAGCAGCATTTTTATCAA
*
7308885 AACGCCACTAAAAACTGG
64 AACGCCACTAAAAACTGA
* * * * *
7308903 AGAAATAACGGTGTTTTTGTCCAAACGCCACTAAAAACTGGAGAAATAGCGGCATTTTTGTCCAA
1 AGAAATAACGGCGTTTTTGTCCAAACGCCACTAAAAACT-GAGCAATAGCAGCATTTTTATCAAA
*
7308968 ACACCACTAAAA
65 ACGCCACTAAAA
7308980 TTGATCAATA
Statistics
Matches: 138, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
81 3 0.02
82 96 0.70
83 39 0.28
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.24
Consensus pattern (81 bp):
AGAAATAACGGCGTTTTTGTCCAAACGCCACTAAAAACTGAGCAATAGCAGCATTTTTATCAAAA
CGCCACTAAAAACTGA
Found at i:7308975 original size:123 final size:123
Alignment explanation
Indices: 7308752--7308979 Score: 289
Period size: 123 Copynumber: 1.9 Consensus size: 123
7308742 ATAACGGCGT
** *
7308752 TTTTTACCCAAACGCCACTAAAAACTGATCAATAGCAGCGTTTTTATCTAAAACGCCACTAAAAA
1 TTTTTACCCAAACGCCACTAAAAACTGAGAAATAACAGCGTTTTTATCTAAAACGCCACTAAAAA
** * * *
7308817 CTAATCAATAACGGCGTTTTTGTCTAAGACGCCACTAAAAACTGGAGGAATAGCAGTA
66 CTAAGAAATAACGGCATTTTTGTCCAAGACACCACTAAAAACTGGAGGAATAGCAGTA
* * * * *
7308875 TTTTTATCCAAACGCCACTAAAAACTGGAGAAATAACGGTGTTTTTGTC-CAAACGCCACTAAAA
1 TTTTTACCCAAACGCCACTAAAAACT-GAGAAATAACAGCGTTTTTATCTAAAACGCCACTAAAA
* *
7308939 ACTGGAGAAATAGCGGCATTTTTGTCCAA-ACACCACTAAAA
65 ACT-AAGAAATAACGGCATTTTTGTCCAAGACACCACTAAAA
7308980 TTGATCAATA
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
123 53 0.60
124 35 0.40
ACGTcount: A:0.38, C:0.22, G:0.15, T:0.25
Consensus pattern (123 bp):
TTTTTACCCAAACGCCACTAAAAACTGAGAAATAACAGCGTTTTTATCTAAAACGCCACTAAAAA
CTAAGAAATAACGGCATTTTTGTCCAAGACACCACTAAAAACTGGAGGAATAGCAGTA
Found at i:7309168 original size:11 final size:11
Alignment explanation
Indices: 7309120--7309161 Score: 75
Period size: 11 Copynumber: 3.8 Consensus size: 11
7309110 ATCTGATTTA
7309120 ATTTTCATATT
1 ATTTTCATATT
*
7309131 ATTTTCTTATT
1 ATTTTCATATT
7309142 ATTTTCATATT
1 ATTTTCATATT
7309153 ATTTTCATA
1 ATTTTCATA
7309162 ATTTTTTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.26, C:0.10, G:0.00, T:0.64
Consensus pattern (11 bp):
ATTTTCATATT
Found at i:7309168 original size:22 final size:22
Alignment explanation
Indices: 7309120--7309169 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
7309110 ATCTGATTTA
*
7309120 ATTTTCATATTATTTTCTTATT
1 ATTTTCATATTATTTTCTAATT
7309142 ATTTTCATATTATTTTCATAATT
1 ATTTTCATATTATTTTC-TAATT
*
7309165 TTTTT
1 ATTTT
7309170 TGAATTCGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 17 0.68
23 8 0.32
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (22 bp):
ATTTTCATATTATTTTCTAATT
Found at i:7310789 original size:41 final size:40
Alignment explanation
Indices: 7310692--7310805 Score: 142
Period size: 40 Copynumber: 2.8 Consensus size: 40
7310682 GTCTCCAAGG
*
7310692 GAATTAGCGGCGCTTTTTAAAAAACGCTGCTAAAAATCGA
1 GAATTAGCGGCGCTTTTTAAAAAACGCCGCTAAAAATCGA
7310732 GAATTAGCGGCGCTTTTGT-AAAAACGCCGC-AAAAGATCGA
1 GAATTAGCGGCGCTTTT-TAAAAAACGCCGCTAAAA-ATCGA
** * *
7310772 GTTTTAGCGGTGCCTTTTTCAAAAACGCCGCTAA
1 GAATTAGCGGCG-CTTTTTAAAAAACGCCGCTAA
7310806 TTCTCGATCT
Statistics
Matches: 65, Mismatches: 4, Indels: 8
0.84 0.05 0.10
Matches are distributed among these distances:
39 4 0.06
40 42 0.65
41 17 0.26
42 2 0.03
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.25
Consensus pattern (40 bp):
GAATTAGCGGCGCTTTTTAAAAAACGCCGCTAAAAATCGA
Found at i:7321431 original size:31 final size:29
Alignment explanation
Indices: 7321396--7321498 Score: 107
Period size: 31 Copynumber: 3.4 Consensus size: 29
7321386 TAATTACATT
7321396 AATATTAAATTAATAAAATATTATCAAGATA
1 AATATTAAATTAATAAAATA-TATC-AGATA
* ** * * *
7321427 AATATTCAATTAAATTTAATATCTCATATC
1 AATATTAAATT-AATAAAATATATCAGATA
7321457 AATATTAAATTAATAAAATACTATCTAGATA
1 AATATTAAATTAATAAAATA-TATC-AGATA
7321488 AATATTAAATT
1 AATATTAAATT
7321499 TATTAAAACA
Statistics
Matches: 57, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
29 7 0.12
30 16 0.28
31 27 0.47
32 7 0.12
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.39
Consensus pattern (29 bp):
AATATTAAATTAATAAAATATATCAGATA
Found at i:7323310 original size:64 final size:64
Alignment explanation
Indices: 7323209--7323337 Score: 206
Period size: 64 Copynumber: 2.0 Consensus size: 64
7323199 GTCATTCATG
* * *
7323209 TTACATCTAGTTATGGGCATTTGATTCATTTCGATCATAGCATCTTAATTATTTGACATAAGCA
1 TTACATCTAGTTATGGGCATTTGATTCATTGCAATCATAGCATCCTAATTATTTGACATAAGCA
*
7323273 TTACATCTAGTTA-GGAGCATTTGATTCATTGCAATCATAGCATCCTAATTATTTGGCATAAGCA
1 TTACATCTAGTTATGG-GCATTTGATTCATTGCAATCATAGCATCCTAATTATTTGACATAAGCA
7323337 T
1 T
7323338 GATACAGGAA
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
63 2 0.03
64 58 0.97
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (64 bp):
TTACATCTAGTTATGGGCATTTGATTCATTGCAATCATAGCATCCTAATTATTTGACATAAGCA
Found at i:7323791 original size:177 final size:177
Alignment explanation
Indices: 7323490--7323883 Score: 610
Period size: 177 Copynumber: 2.2 Consensus size: 177
7323480 GAAGACAACA
*
7323490 AGCCTTAACCCCCTAAGCAGTA-GGTAACAGACTGCAAATTACAGATCTTATCACCATGTATCGG
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGACTGAAAATTACAGATCTTATCACCATGTATCGG
* * ** * *
7323554 CTATGGAGCAGATCGAAAATGGTGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCC
66 CTATAGAACAGATAAAAAATGGAGAGTCTTATCTCCATGTATCAGCTATGGAGCAGATTTTAGCC
*
7323619 ACCGGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACG
131 ACCGGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAAATACG
* * * *
7323666 AGCTTTAACCCCCTAAGCAGTAGGGTTACAGACTGTAAATTACAGATCTTATCTCCATGTATCGG
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGACTGAAAATTACAGATCTTATCACCATGTATCGG
* * *
7323731 CTATAGAACAGATAAAAAATGGAGAGTCTTATCTCCATGTCTCATCTATGGAGTAGATTTTAGCC
66 CTATAGAACAGATAAAAAATGGAGAGTCTTATCTCCATGTATCAGCTATGGAGCAGATTTTAGCC
*
7323796 ACCGGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGTTTGAAAATACG
131 ACCGGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAAATACG
* * *
7323843 AGCCTTAACCCCTTAAGCAGTAGGGTGACAGGCTGAAAATT
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGACTGAAAATT
7323884 GCAAATTTTA
Statistics
Matches: 197, Mismatches: 20, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
176 21 0.11
177 176 0.89
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (177 bp):
AGCCTTAACCCCCTAAGCAGTAGGGTAACAGACTGAAAATTACAGATCTTATCACCATGTATCGG
CTATAGAACAGATAAAAAATGGAGAGTCTTATCTCCATGTATCAGCTATGGAGCAGATTTTAGCC
ACCGGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAAATACG
Found at i:7325389 original size:24 final size:24
Alignment explanation
Indices: 7325357--7325407 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
7325347 TTTAACATAC
7325357 TTTACTGATTTTGCATTATTCTAG
1 TTTACTGATTTTGCATTATTCTAG
7325381 TTTACTGATTTTGCATTATTCTAG
1 TTTACTGATTTTGCATTATTCTAG
7325405 TTT
1 TTT
7325408 GTTATTTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.20, C:0.12, G:0.12, T:0.57
Consensus pattern (24 bp):
TTTACTGATTTTGCATTATTCTAG
Found at i:7325461 original size:16 final size:16
Alignment explanation
Indices: 7325437--7325476 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
7325427 CATATATATA
7325437 TTTAAAATTGT-TTTAT
1 TTTAAAATT-TATTTAT
*
7325453 TTTATAATTTATTTAT
1 TTTAAAATTTATTTAT
7325469 TTTAAAAT
1 TTTAAAAT
7325477 CCTCTTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 1 0.05
16 20 0.95
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
TTTAAAATTTATTTAT
Found at i:7326465 original size:126 final size:126
Alignment explanation
Indices: 7326220--7326530 Score: 426
Period size: 126 Copynumber: 2.5 Consensus size: 126
7326210 CACATAAGGA
*
7326220 AATATTTCGTGTTTGAAAATTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGACTTTTTTTCAT
1 AATATTTCGTGTTTGAGAATTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGA--TTTTTTCAT
** * *
7326285 TCAACTAAAATATGGAATATCCTTGTGAAATTTCGTCCATGTTTTCTTAAATTAAAACGAGGC
64 TCAACTAAAATACAGAATATCCTTGTGAAATTTCATCCACGTTTTCTTAAATTAAAACGAGGC
* * *
7326348 AATATTTTGTGTTTGAGAGTTTGAGAGATCGTGCCCAATCGTGTTGGGTTTCGATTTTTTCATTC
1 AATATTTCGTGTTTGAGAATTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTTCATTC
* * *
7326413 GACTAAAATACAGAATATCCTTTTGAAATTTCATCCACGTTTTCTTAAATTAAAATGAGGC
66 AACTAAAATACAGAATATCCTTGTGAAATTTCATCCACGTTTTCTTAAATTAAAACGAGGC
* * * * * * *
7326474 AGTATTTCATATTTG-GAAATTCGAAAAATCGTGCCCAATCGTGCAGGGTTTCGATTT
1 AATATTTCGTGTTTGAG-AATTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTT
7326531 ATCGTTTGGC
Statistics
Matches: 161, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
125 1 0.01
126 110 0.68
128 50 0.31
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (126 bp):
AATATTTCGTGTTTGAGAATTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTTCATTC
AACTAAAATACAGAATATCCTTGTGAAATTTCATCCACGTTTTCTTAAATTAAAACGAGGC
Found at i:7328986 original size:12 final size:12
Alignment explanation
Indices: 7328954--7328988 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
7328944 AAAAAAAATA
7328954 ATATAATAAATTT
1 ATATAA-AAATTT
7328967 AT-TAAAAATTT
1 ATATAAAAATTT
7328978 ATATAAAAATT
1 ATATAAAAATT
7328989 AAATATGACT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 8 0.38
12 11 0.52
13 2 0.10
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
ATATAAAAATTT
Found at i:7335407 original size:13 final size:13
Alignment explanation
Indices: 7335389--7335414 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7335379 TTATATTCGC
7335389 TTTGAAGATTTGG
1 TTTGAAGATTTGG
7335402 TTTGAAGATTTGG
1 TTTGAAGATTTGG
7335415 AGACATTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (13 bp):
TTTGAAGATTTGG
Found at i:7352192 original size:40 final size:40
Alignment explanation
Indices: 7352095--7352193 Score: 125
Period size: 40 Copynumber: 2.5 Consensus size: 40
7352085 GAGCTTCTGT
*
7352095 TCAGCTCTTATGAGTTT-TG-TTGGCATGTTTCGAGTGGA
1 TCAGCTCTTATGAGTTTCTGTTTGGCATATTTCGAGTGGA
* *
7352133 CCAGCTCTTAT-AGGATTCTGTTTGGCATATTTCG-GTTGGA
1 TCAGCTCTTATGA-GTTTCTGTTTGGCATATTTCGAG-TGGA
7352173 TCAGCTCTTATGAGTTTCTGT
1 TCAGCTCTTATGAGTTTCTGT
7352194 ATGGTGTCTT
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
37 1 0.02
38 13 0.25
39 3 0.06
40 33 0.65
41 1 0.02
ACGTcount: A:0.16, C:0.16, G:0.25, T:0.42
Consensus pattern (40 bp):
TCAGCTCTTATGAGTTTCTGTTTGGCATATTTCGAGTGGA
Found at i:7363003 original size:9 final size:9
Alignment explanation
Indices: 7362989--7363182 Score: 69
Period size: 9 Copynumber: 20.6 Consensus size: 9
7362979 CTGCCTTTAT
7362989 TAAAAATTA
1 TAAAAATTA
*
7362998 TAAAAA-AA
1 TAAAAATTA
*
7363006 TAAAATTTA
1 TAAAAATTA
*
7363015 TAAAATTTA
1 TAAAAATTA
*
7363024 TAAATATTA
1 TAAAAATTA
**
7363033 TTAAATTTTAA
1 -TAAAAATT-A
7363044 TAAAAGAATT-
1 T-AAA-AATTA
* *
7363054 CAAATATTA
1 TAAAAATTA
*
7363063 -AAAATTTA
1 TAAAAATTA
7363071 CTAAAAATTA
1 -TAAAAATTA
7363081 -AAAAATATA
1 TAAAAAT-TA
7363090 TAAAAATCGTA
1 TAAAAAT--TA
*
7363101 -AAAAAATA
1 TAAAAATTA
*
7363109 TAAAAACTTG
1 TAAAAA-TTA
*
7363119 TAAAATTTTTA
1 TAAAA--ATTA
7363130 TAAAAA-TA
1 TAAAAATTA
7363138 GTAAAAAATTA
1 -T-AAAAATTA
*
7363149 TAAAAAAAATA
1 T--AAAAATTA
*
7363160 TAGAAA-TA
1 TAAAAATTA
7363168 TAAAAAATTA
1 T-AAAAATTA
7363178 TAAAA
1 TAAAA
7363183 TTTTCTAAAA
Statistics
Matches: 141, Mismatches: 23, Indels: 42
0.68 0.11 0.20
Matches are distributed among these distances:
8 28 0.20
9 46 0.33
10 41 0.29
11 24 0.17
12 2 0.01
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (9 bp):
TAAAAATTA
Found at i:7363094 original size:10 final size:10
Alignment explanation
Indices: 7363055--7363213 Score: 70
Period size: 10 Copynumber: 16.2 Consensus size: 10
7363045 AAAAGAATTC
7363055 AAATAT-TAA
1 AAATATATAA
*
7363064 AAATTTACTAA
1 AAATATA-TAA
7363075 AAAT-TA-AA
1 AAATATATAA
7363083 AAATATATAA
1 AAATATATAA
*
7363093 AAATCGTA-AA
1 AAAT-ATATAA
7363103 AAA-ATATAA
1 AAATATATAA
*
7363112 AAACT-TGTAA
1 AAA-TATATAA
* *
7363122 AATTTTTATAA
1 AA-ATATATAA
7363133 AAATAGTA-AA
1 AAATA-TATAA
7363143 AAAT-TATAAA
1 AAATATAT-AA
* *
7363153 AAAAATATAG
1 AAATATATAA
7363163 AAATATA-AA
1 AAATATATAA
7363172 AAAT-TATAA
1 AAATATATAA
* * *
7363181 AATTTTCT-A
1 AAATATATAA
7363190 AAATCATAATAA
1 AAAT-AT-ATAA
*
7363202 AATTATATAA
1 AAATATATAA
7363212 AA
1 AA
7363214 TGTAAATATT
Statistics
Matches: 113, Mismatches: 18, Indels: 37
0.67 0.11 0.22
Matches are distributed among these distances:
8 12 0.11
9 26 0.23
10 48 0.42
11 23 0.20
12 4 0.04
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (10 bp):
AAATATATAA
Found at i:7363103 original size:19 final size:19
Alignment explanation
Indices: 7363055--7363154 Score: 71
Period size: 19 Copynumber: 5.2 Consensus size: 19
7363045 AAAAGAATTC
* *
7363055 AAATATTAAAAATTTACTAA
1 AAATAGTAAAAATATA-TAA
7363075 AAAT--TAAAAAATATATAA
1 AAATAGT-AAAAATATATAA
* *
7363093 AAATCGTAAAAAAATATAA
1 AAATAGTAAAAATATATAA
* * *
7363112 AAACTTGTAAAATTTTTATAA
1 AAA-TAGTAAAA-ATATATAA
7363133 AAATAGTAAAAA-ATTATAA
1 AAATAGTAAAAATA-TATAA
7363152 AAA
1 AAA
7363155 AAATATAGAA
Statistics
Matches: 65, Mismatches: 9, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
18 8 0.12
19 30 0.46
20 19 0.29
21 8 0.12
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (19 bp):
AAATAGTAAAAATATATAA
Found at i:7363106 original size:21 final size:21
Alignment explanation
Indices: 7363080--7363156 Score: 68
Period size: 21 Copynumber: 3.8 Consensus size: 21
7363070 ACTAAAAATT
*
7363080 AAAAAATATATAAAAATCGTA
1 AAAAAATATATAAAAATAGTA
* *
7363101 AAAAAATATA-AAAACTTGT-
1 AAAAAATATATAAAAATAGTA
** *
7363120 AAAATTTTTATAAAAATAGTA
1 AAAAAATATATAAAAATAGTA
* *
7363141 AAAAATTATAAAAAAA
1 AAAAAATATATAAAAA
7363157 ATATAGAAAT
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
19 7 0.16
20 14 0.32
21 23 0.52
ACGTcount: A:0.66, C:0.03, G:0.04, T:0.27
Consensus pattern (21 bp):
AAAAAATATATAAAAATAGTA
Found at i:7363123 original size:40 final size:40
Alignment explanation
Indices: 7363079--7363154 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
7363069 TACTAAAAAT
*
7363079 TAAAAAATATATAAAAATCGTAAAAAAATATAAAAACTTG
1 TAAAAAATATATAAAAATAGTAAAAAAATATAAAAACTTG
** * *
7363119 TAAAATTTTTATAAAAATAGTAAAAAATTATAAAAA
1 TAAAAAATATATAAAAATAGTAAAAAAATATAAAAA
7363155 AAATATAGAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.29
Consensus pattern (40 bp):
TAAAAAATATATAAAAATAGTAAAAAAATATAAAAACTTG
Found at i:7363153 original size:59 final size:56
Alignment explanation
Indices: 7363061--7363219 Score: 151
Period size: 58 Copynumber: 2.7 Consensus size: 56
7363051 ATTCAAATAT
* * *
7363061 TAAAAATTTACTAAAAAT-TAAAAAATATATAAAAATCGTAAAAAAATATAAAAACTTG
1 TAAAATTTTA-TAAAAATATAAAAAAT-TATAAAAAT-GTAAAAAAATATAAAAAATTA
** * *
7363119 TAAAATTTTTATAAAAATAGTAAAAAATTATAAAAAAAATATAGAAATATAAAAAATTA
1 TAAAA-TTTTATAAAAATA-TAAAAAATTAT-AAAAATGTAAAAAAATATAAAAAATTA
*
7363178 TAAAATTTTCT-AAAATCATAATAAAATTATATAAAATGTAAA
1 TAAAATTTTATAAAAAT-ATAA-AAAATTATA-AAAATGTAAA
7363220 TATTTTGTAA
Statistics
Matches: 83, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
57 9 0.11
58 33 0.40
59 28 0.34
60 13 0.16
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (56 bp):
TAAAATTTTATAAAAATATAAAAAATTATAAAAATGTAAAAAAATATAAAAAATTA
Found at i:7363243 original size:39 final size:39
Alignment explanation
Indices: 7363151--7363245 Score: 97
Period size: 39 Copynumber: 2.5 Consensus size: 39
7363141 AAAAATTATA
*
7363151 AAAAAAATATAGAAA-TATAAAAAATTATAAAATTTTCT
1 AAAAAAATATAAAAATTATAAAAAATTATAAAATTTTCT
** * * *
7363189 AAAATCATA-ATAAAATTATATAAAATGTA-AATATTTTGT
1 AAAAAAATATA-AAAATTATAAAAAAT-TATAAAATTTTCT
7363228 AAAAAAATATAAAAATTA
1 AAAAAAATATAAAAATTA
7363246 GTGTACCAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 7
0.75 0.13 0.12
Matches are distributed among these distances:
37 1 0.02
38 10 0.22
39 31 0.69
40 3 0.07
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (39 bp):
AAAAAAATATAAAAATTATAAAAAATTATAAAATTTTCT
Found at i:7363459 original size:19 final size:17
Alignment explanation
Indices: 7363437--7363486 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 17
7363427 TTTTTAAAAT
7363437 TTTTATTAAAATTTAATTA
1 TTTT-TTAAAATTT-ATTA
7363456 TTTTTCTAAAATTTATTA
1 TTTTT-TAAAATTTATTA
*
7363474 TTTTTTATAATTT
1 TTTTTTAAAATTT
7363487 TTTTAATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 7 0.24
18 10 0.34
19 12 0.41
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTTTTAAAATTTATTA
Found at i:7363475 original size:18 final size:19
Alignment explanation
Indices: 7363443--7363478 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
7363433 AAATTTTTAT
7363443 TAAAATTTAATTATTTTTC
1 TAAAATTTAATTATTTTTC
7363462 TAAAATTT-ATTATTTTT
1 TAAAATTTAATTATTTTT
7363479 TATAATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (19 bp):
TAAAATTTAATTATTTTTC
Found at i:7363664 original size:88 final size:89
Alignment explanation
Indices: 7363512--7363734 Score: 229
Period size: 88 Copynumber: 2.5 Consensus size: 89
7363502 AGAGCAAGCG
* ** * * * *
7363512 CTTAATTGC-TTTTTTGAAAAAAATTGAGGGTCTTTGTGATGCATTTTGAAAGTTCAAATACTCA
1 CTTAATTACTTTTTTTGAAAAAGTTTGAAGGTCTTTTTTATCCATTTTGAAAGTTCAAATACTCA
* **
7363576 ATTGAGTG-GGAAAAAATCAGGGA
66 ATTAAGTGAAAAAAAAATCAGGGA
* * *
7363599 CTTAATTACTTTTTTTGAAGAAGTTTGAAGGTCTTTTTTATCCATTTTGAAAGTTCAAGTGCTCA
1 CTTAATTACTTTTTTTGAAAAAGTTTGAAGGTCTTTTTTATCCATTTTGAAAGTTCAAATACTCA
* *
7363664 ATTAAGTGTAAAAAAAAATGAGGGG
66 ATTAAGTG-AAAAAAAAATCAGGGA
* * *
7363689 CTTGATTACTTTTTTTAAAAAAAGTTT-AAGGAC-TTTTTATACCATT
1 CTTAATTACTTTTTTT-GAAAAAGTTTGAAGGTCTTTTTTAT-CCATT
7363735 AATCCATCTT
Statistics
Matches: 112, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
87 8 0.07
88 53 0.47
89 7 0.06
90 36 0.32
91 8 0.07
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (89 bp):
CTTAATTACTTTTTTTGAAAAAGTTTGAAGGTCTTTTTTATCCATTTTGAAAGTTCAAATACTCA
ATTAAGTGAAAAAAAAATCAGGGA
Found at i:7366032 original size:31 final size:31
Alignment explanation
Indices: 7365997--7366066 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
7365987 AATATGGTGA
* *
7365997 GTGGTTATTTGTAGGACTTAGA-AGGATGTGG
1 GTGGTTAATTATAGGACTTA-ATAGGATGTGG
* *
7366028 GTGGTTAATTATGGGACTTAATGGGATGTGG
1 GTGGTTAATTATAGGACTTAATAGGATGTGG
7366059 GTGGTTAA
1 GTGGTTAA
7366067 GAAATTATCC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 1 0.03
31 33 0.97
ACGTcount: A:0.23, C:0.03, G:0.39, T:0.36
Consensus pattern (31 bp):
GTGGTTAATTATAGGACTTAATAGGATGTGG
Found at i:7376869 original size:27 final size:27
Alignment explanation
Indices: 7376787--7376874 Score: 126
Period size: 27 Copynumber: 3.3 Consensus size: 27
7376777 ATGCCACAAA
7376787 TATCTG-ATCTGGTGGCTCTGTCACAT
1 TATCTGTATCTGGTGGCTCTGTCACAT
*
7376813 ATATCTGT-TCTGGTGGCTCTGCCACGAT
1 -TATCTGTATCTGGTGGCTCTGTCAC-AT
*
7376841 TATCTGTATCTGGTGACTCTGTCACAT
1 TATCTGTATCTGGTGGCTCTGTCACAT
7376868 TATCTGT
1 TATCTGT
7376875 TCTAGCAGCC
Statistics
Matches: 55, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
27 38 0.69
28 17 0.31
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.40
Consensus pattern (27 bp):
TATCTGTATCTGGTGGCTCTGTCACAT
Found at i:7376872 original size:54 final size:54
Alignment explanation
Indices: 7376768--7376877 Score: 159
Period size: 54 Copynumber: 2.0 Consensus size: 54
7376758 AGGAAGCGTC
* *
7376768 CTGGTGTCTATGCCACAAATATCTGATCTGGTGGCTCTGTCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGTCACATATATCTGTT
* * *
7376822 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGTCACATATATCTGTT
7376876 CT
1 CT
7376878 AGCAGCCATG
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
54 31 0.62
55 19 0.38
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGTCACATATATCTGTT
Found at i:7394298 original size:42 final size:42
Alignment explanation
Indices: 7394239--7394318 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
7394229 ACTTTACGTC
7394239 TAATAAACCTAAATTAAATTATAATTAA-ATTTAAATGTCAAT
1 TAATAAACCTAAATTAAATTATAA-TAATATTTAAATGTCAAT
* *
7394281 TAATAAATCTAAATTAAATTATAATAATATTTAGATGT
1 TAATAAACCTAAATTAAATTATAATAATATTTAAATGT
7394319 GAATACAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
41 3 0.09
42 32 0.91
ACGTcount: A:0.51, C:0.05, G:0.04, T:0.40
Consensus pattern (42 bp):
TAATAAACCTAAATTAAATTATAATAATATTTAAATGTCAAT
Found at i:7395695 original size:20 final size:20
Alignment explanation
Indices: 7395624--7395703 Score: 63
Period size: 19 Copynumber: 3.8 Consensus size: 20
7395614 TATTTTCATA
*
7395624 TTTTAAACATAAAAAATATAATT
1 TTTTAAAAATAAAAAA-AT-A-T
*
7395647 TTTTAAAAAAATAAAAAAA-CT
1 TTTT--AAAAATAAAAAAATAT
* *
7395668 CTTCAAAAATAAAAAAATAT
1 TTTTAAAAATAAAAAAATAT
7395688 TTTTAAAAATATAAAA
1 TTTTAAAAATA-AAAA
7395704 GATCCCAATA
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
19 13 0.28
20 10 0.22
21 7 0.15
23 4 0.09
24 1 0.02
25 11 0.24
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (20 bp):
TTTTAAAAATAAAAAAATAT
Found at i:7396430 original size:22 final size:20
Alignment explanation
Indices: 7396400--7396439 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
7396390 TTCCGAAAAA
7396400 TCTTCCTCCCTTCTTACCATAT
1 TCTTCCT-CCTTCTT-CCATAT
*
7396422 TCTTTCTCCTTCTTCCAT
1 TCTTCCTCCTTCTTCCAT
7396440 TCTTCATCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 7 0.41
22 6 0.35
ACGTcount: A:0.10, C:0.40, G:0.00, T:0.50
Consensus pattern (20 bp):
TCTTCCTCCTTCTTCCATAT
Found at i:7398373 original size:23 final size:22
Alignment explanation
Indices: 7398347--7398398 Score: 52
Period size: 22 Copynumber: 2.3 Consensus size: 22
7398337 TAAAAGAACA
7398347 TATATAAATAATAAGAAAAATAT-
1 TATATAAATAAT-A-AAAAATATC
* *
7398370 TATAATAAGTACTAAAAAATATC
1 TAT-ATAAATAATAAAAAATATC
7398393 TATATA
1 TATATA
7398399 TATACATGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
22 11 0.44
23 7 0.28
24 7 0.28
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.33
Consensus pattern (22 bp):
TATATAAATAATAAAAAATATC
Found at i:7398813 original size:17 final size:16
Alignment explanation
Indices: 7398770--7398818 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
7398760 ATAATACTTC
*
7398770 ATAAATATATATACGTA
1 ATAAA-ATATATACATA
*
7398787 CTAAAA-ATATACATA
1 ATAAAATATATACATA
7398802 ATAATAATATATACATA
1 ATAA-AATATATACATA
7398819 CAAAGTACAC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 11 0.41
16 3 0.11
17 13 0.48
ACGTcount: A:0.57, C:0.08, G:0.02, T:0.33
Consensus pattern (16 bp):
ATAAAATATATACATA
Found at i:7398880 original size:16 final size:16
Alignment explanation
Indices: 7398856--7398886 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7398846 AATAGTAAAC
*
7398856 ATAATATTAATATTAA
1 ATAAAATTAATATTAA
7398872 ATAAAATTAATATTA
1 ATAAAATTAATATTA
7398887 CAAATTTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
ATAAAATTAATATTAA
Found at i:7405776 original size:22 final size:22
Alignment explanation
Indices: 7405746--7405787 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
7405736 TTCGGCAGCA
7405746 AATAACAATCGGTTCTTGAATG
1 AATAACAATCGGTTCTTGAATG
*
7405768 AATAGCAATCGGTTCTTGAA
1 AATAACAATCGGTTCTTGAA
7405788 GGAGATCTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (22 bp):
AATAACAATCGGTTCTTGAATG
Found at i:7407671 original size:15 final size:15
Alignment explanation
Indices: 7407651--7407695 Score: 90
Period size: 15 Copynumber: 3.0 Consensus size: 15
7407641 CATTTGATTA
7407651 AAGTTAATGTATAGT
1 AAGTTAATGTATAGT
7407666 AAGTTAATGTATAGT
1 AAGTTAATGTATAGT
7407681 AAGTTAATGTATAGT
1 AAGTTAATGTATAGT
7407696 TTTGAAATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (15 bp):
AAGTTAATGTATAGT
Found at i:7411380 original size:48 final size:48
Alignment explanation
Indices: 7411301--7411397 Score: 131
Period size: 48 Copynumber: 2.0 Consensus size: 48
7411291 TTATGCTATG
* * *
7411301 CATTTCTAAACTTGGTCTTCCACTGTATACACTCTTACCACTATTTAT
1 CATTACTAAACTCGGTCTTCCACTGTATACACTCTTACCACTAATTAT
* * * *
7411349 CATTACTAAACTCGGTGTTCCATTGTCTACACTCTTATCACTAATTAT
1 CATTACTAAACTCGGTCTTCCACTGTATACACTCTTACCACTAATTAT
7411397 C
1 C
7411398 CCTTCTTGAA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.26, C:0.27, G:0.07, T:0.40
Consensus pattern (48 bp):
CATTACTAAACTCGGTCTTCCACTGTATACACTCTTACCACTAATTAT
Found at i:7412685 original size:20 final size:20
Alignment explanation
Indices: 7412660--7412706 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
7412650 TCAAGTTCTA
7412660 TATCTCATTTCATCATTTCC
1 TATCTCATTTCATCATTTCC
7412680 TATCTCATTTCATCATTTCC
1 TATCTCATTTCATCATTTCC
7412700 T-TCTCAT
1 TATCTCAT
7412707 AATTCAGTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 6 0.22
20 21 0.78
ACGTcount: A:0.19, C:0.30, G:0.00, T:0.51
Consensus pattern (20 bp):
TATCTCATTTCATCATTTCC
Found at i:7416160 original size:30 final size:30
Alignment explanation
Indices: 7416101--7416188 Score: 104
Period size: 30 Copynumber: 2.9 Consensus size: 30
7416091 CCAGACAGAT
* * * *
7416101 AACCTTGATATAGTTTCAACTTGTTTGAGC
1 AACCTTGATATAATGTCAGCTTGTGTGAGC
** *
7416131 AATTTTGTTATAATGTCAGCTTGTGTGAGC
1 AACCTTGATATAATGTCAGCTTGTGTGAGC
*
7416161 AACCTTGATATACTGTCAGCTTGTGTGA
1 AACCTTGATATAATGTCAGCTTGTGTGA
7416189 ACATCATATT
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (30 bp):
AACCTTGATATAATGTCAGCTTGTGTGAGC
Found at i:7423135 original size:23 final size:23
Alignment explanation
Indices: 7423107--7423152 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
7423097 GGTAAACTAT
7423107 AAAAATAATCACTTTTCTTTGCC
1 AAAAATAATCACTTTTCTTTGCC
7423130 AAAAATAATCACTTTTCTTTGCC
1 AAAAATAATCACTTTTCTTTGCC
7423153 TCAGATTGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.22, G:0.04, T:0.39
Consensus pattern (23 bp):
AAAAATAATCACTTTTCTTTGCC
Found at i:7431058 original size:20 final size:20
Alignment explanation
Indices: 7431035--7431109 Score: 59
Period size: 20 Copynumber: 3.8 Consensus size: 20
7431025 GTATGTTTCC
7431035 ATTAACTTATGTTAATTAAG
1 ATTAACTTATGTTAATTAAG
7431055 ATTATGAC-TA-GTTAATTAAG
1 ATTA--ACTTATGTTAATTAAG
* * *
7431075 ATTTAGTT-TAATTAATTAAG
1 ATTAACTTAT-GTTAATTAAG
7431095 ATTAA-TTAATGTTAA
1 ATTAACTT-ATGTTAA
7431110 ACAAAGTATA
Statistics
Matches: 43, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
18 1 0.02
19 3 0.07
20 34 0.79
21 3 0.07
22 2 0.05
ACGTcount: A:0.41, C:0.03, G:0.11, T:0.45
Consensus pattern (20 bp):
ATTAACTTATGTTAATTAAG
Found at i:7435738 original size:50 final size:50
Alignment explanation
Indices: 7435611--7435738 Score: 193
Period size: 50 Copynumber: 2.5 Consensus size: 50
7435601 ATGAACAAAT
* *
7435611 GAGTTACTTAATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGG
1 GAGTTACATAATGCATGACTTAA-TTAATGATGCAAACTTAACTAACATGA
* * *
7435662 GAGTTACATAATGCATGTCATAATTAATGATGCAAACTTAACTTACATGA
1 GAGTTACATAATGCATGACTTAATTAATGATGCAAACTTAACTAACATGA
*
7435712 GAGTTACATAATGCATGACTTTATTAA
1 GAGTTACATAATGCATGACTTAATTAA
7435739 AGGCAGAACA
Statistics
Matches: 69, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
50 49 0.71
51 20 0.29
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (50 bp):
GAGTTACATAATGCATGACTTAATTAATGATGCAAACTTAACTAACATGA
Found at i:7439890 original size:226 final size:226
Alignment explanation
Indices: 7439496--7439941 Score: 813
Period size: 226 Copynumber: 2.0 Consensus size: 226
7439486 GCACACTATA
*
7439496 AACACTCATACACAAATTTATTAATGAACATGCAGCTTAAATTACCTTATTTAAAATGAAAATAA
1 AACACTCATACACAAATTTATTAATGAACATGCAGCTTAAATCACCTTATTTAAAATGAAAATAA
7439561 ACACACTTTAATTTATGTAGTAAAAAGTAATAGCCAAATTAAATAACATACTTATATAAACAAAC
66 ACACACTTTAATTTATGTAGTAAAAAGTAATAGCCAAATTAAATAACATACTTATATAAACAAAC
*
7439626 TCAAACATATTTAACAACTAAGATGCTTAAATGCATGGTTAAATGTAAATTAAATCAACAAACGA
131 TCAAACATATTTAACAACTAAGATGCTTAAATGCATGGTTAAATGTAAACTAAATCAACAAACGA
*
7439691 GTTACTT-AATGCATGACTTCATTTATTAATG
196 GTTA-TTGAATGCATGACTTAATTTATTAATG
* *
7439722 AACACTCATACATAAATTTATTAATGAACATGCAGTTTAAATCACCTTATTTAAAATGAAAATAA
1 AACACTCATACACAAATTTATTAATGAACATGCAGCTTAAATCACCTTATTTAAAATGAAAATAA
*
7439787 ACACACTTTAATTTATGTAGTAAAAAGTAATAGCCAAATTAAATGACATACTTATATAAACAAAC
66 ACACACTTTAATTTATGTAGTAAAAAGTAATAGCCAAATTAAATAACATACTTATATAAACAAAC
*
7439852 TCAAACATATTTAACAACTAAGATGCTTAAATGCATGGTTAAATGTAAACTAAATGAACAAACGA
131 TCAAACATATTTAACAACTAAGATGCTTAAATGCATGGTTAAATGTAAACTAAATCAACAAACGA
7439917 GTTATTGAATGCATGACTTAATTTA
196 GTTATTGAATGCATGACTTAATTTA
7439942 ATGATGCAAA
Statistics
Matches: 212, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
225 2 0.01
226 210 0.99
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (226 bp):
AACACTCATACACAAATTTATTAATGAACATGCAGCTTAAATCACCTTATTTAAAATGAAAATAA
ACACACTTTAATTTATGTAGTAAAAAGTAATAGCCAAATTAAATAACATACTTATATAAACAAAC
TCAAACATATTTAACAACTAAGATGCTTAAATGCATGGTTAAATGTAAACTAAATCAACAAACGA
GTTATTGAATGCATGACTTAATTTATTAATG
Found at i:7439971 original size:51 final size:51
Alignment explanation
Indices: 7439924--7440045 Score: 183
Period size: 50 Copynumber: 2.4 Consensus size: 51
7439914 CGAGTTATTG
*
7439924 AATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGGGAGTTACAT
1 AATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGAGAGTTACAT
* * * *
7439975 AACGCATGTCATAATTT-ATGATGCAAACTTAACTTACATGAGAGTTACAT
1 AATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGAGAGTTACAT
*
7440025 AATGCATGACTTTATTTAATG
1 AATGCATGACTTAATTTAATG
7440046 CAAAACACAT
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
50 44 0.72
51 17 0.28
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.34
Consensus pattern (51 bp):
AATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGAGAGTTACAT
Found at i:7440112 original size:39 final size:39
Alignment explanation
Indices: 7440053--7440129 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
7440043 ATGCAAAACA
* *
7440053 CATATTAATGTTGTTCAAACTATGACATAATTAAAGACT
1 CATACTAATGATGTTCAAACTATGACATAATTAAAGACT
7440092 CATACTAATGATGTTCAAACTATGACATAATTAAAGAC
1 CATACTAATGATGTTCAAACTATGACATAATTAAAGAC
7440130 ACAAATTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.32
Consensus pattern (39 bp):
CATACTAATGATGTTCAAACTATGACATAATTAAAGACT
Found at i:7440477 original size:24 final size:24
Alignment explanation
Indices: 7440445--7440494 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
7440435 AACCACCTCA
7440445 TATATGTTGTTGAGAAGGAACACT
1 TATATGTTGTTGAGAAGGAACACT
7440469 TATATGTTGTTGAGAAGGAACACT
1 TATATGTTGTTGAGAAGGAACACT
7440493 TA
1 TA
7440495 CCTTACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.34, C:0.08, G:0.24, T:0.34
Consensus pattern (24 bp):
TATATGTTGTTGAGAAGGAACACT
Found at i:7440550 original size:60 final size:60
Alignment explanation
Indices: 7440481--7440609 Score: 249
Period size: 60 Copynumber: 2.1 Consensus size: 60
7440471 TATGTTGTTG
*
7440481 AGAAGGAACACTTACCTTACACAATTCATACAAGAGTAGAATTTACAACACATGGACTTA
1 AGAAGGAACACTTACCTTACACAATTCATACAAGAGTAGAATTTACAACACATAGACTTA
7440541 AGAAGGAACACTTACCTTACACAATTCATACAAGAGTAGAATTTACAACACATAGACTTA
1 AGAAGGAACACTTACCTTACACAATTCATACAAGAGTAGAATTTACAACACATAGACTTA
7440601 AGAAGGAAC
1 AGAAGGAAC
7440610 TCACGAGAAA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
60 68 1.00
ACGTcount: A:0.45, C:0.19, G:0.14, T:0.22
Consensus pattern (60 bp):
AGAAGGAACACTTACCTTACACAATTCATACAAGAGTAGAATTTACAACACATAGACTTA
Found at i:7440592 original size:29 final size:29
Alignment explanation
Indices: 7440499--7440592 Score: 68
Period size: 29 Copynumber: 3.2 Consensus size: 29
7440489 CACTTACCTT
7440499 ACACAATTCATACAAGAGTAGAATTTACA
1 ACACAATTCATACAAGAGTAGAATTTACA
** * * * *
7440528 ACAC-ATGGACT-TAAGAAGGA-ACACTTACCTT
1 ACACAATTCA-TACAAG-AGTAGA-ATTTA-C-A
7440559 ACACAATTCATACAAGAGTAGAATTTACA
1 ACACAATTCATACAAGAGTAGAATTTACA
7440588 ACACA
1 ACACA
7440593 TAGACTTAAG
Statistics
Matches: 45, Mismatches: 12, Indels: 16
0.62 0.16 0.22
Matches are distributed among these distances:
28 7 0.16
29 17 0.38
30 2 0.04
31 12 0.27
32 7 0.16
ACGTcount: A:0.46, C:0.20, G:0.12, T:0.22
Consensus pattern (29 bp):
ACACAATTCATACAAGAGTAGAATTTACA
Found at i:7441354 original size:17 final size:17
Alignment explanation
Indices: 7441334--7441373 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
7441324 CTGGAGTTTG
7441334 CCAAATGGAAAATCCCA
1 CCAAATGGAAAATCCCA
**
7441351 CCAAATGGCGAATCCCA
1 CCAAATGGAAAATCCCA
7441368 CCAAAT
1 CCAAAT
7441374 ATGCCACACA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.42, C:0.33, G:0.12, T:0.12
Consensus pattern (17 bp):
CCAAATGGAAAATCCCA
Found at i:7447668 original size:37 final size:38
Alignment explanation
Indices: 7447609--7447688 Score: 119
Period size: 37 Copynumber: 2.1 Consensus size: 38
7447599 GCAAATGATT
7447609 TTAAAATTATTAAAGTTATTTTTT-AAATATAAAATTA
1 TTAAAATTATTAAAGTTATTTTTTGAAATATAAAATTA
* *
7447646 TTAAAATTATTATA-TTATTTTTTTGAAATATAAACTTA
1 TTAAAATTATTAAAGTTA-TTTTTTGAAATATAAAATTA
7447684 TTAAA
1 TTAAA
7447689 TAGATCATTG
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
36 3 0.08
37 19 0.49
38 17 0.44
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (38 bp):
TTAAAATTATTAAAGTTATTTTTTGAAATATAAAATTA
Found at i:7448051 original size:28 final size:28
Alignment explanation
Indices: 7447993--7448059 Score: 75
Period size: 27 Copynumber: 2.4 Consensus size: 28
7447983 GGTTATCGAA
*
7447993 TTTGGGGATTTTGTGTAAGGGTTTTGAT
1 TTTGGGGATTTTGTGTAAGGATTTTGAT
*
7448021 TTTGGGGATTTT-T-TTAGGATTTCTGAT
1 TTTGGGGATTTTGTGTAAGGATTT-TGAT
* *
7448048 TTTTGAGATTTT
1 TTTGGGGATTTT
7448060 AGGGATTGCT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 7 0.21
27 15 0.44
28 12 0.35
ACGTcount: A:0.15, C:0.01, G:0.28, T:0.55
Consensus pattern (28 bp):
TTTGGGGATTTTGTGTAAGGATTTTGAT
Found at i:7450539 original size:52 final size:52
Alignment explanation
Indices: 7450462--7450565 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
7450452 AATTTAGAAA
7450462 AAAAAATAGAGTTGTTTTTTATGGTGGTGCACAATGATGGTGGCCACAGTGG
1 AAAAAATAGAGTTGTTTTTTATGGTGGTGCACAATGATGGTGGCCACAGTGG
*
7450514 AAAAAATAGAGTTTTTTTTTATGGTGGTGCACAATGATGGTGGCCACAGTGG
1 AAAAAATAGAGTTGTTTTTTATGGTGGTGCACAATGATGGTGGCCACAGTGG
7450566 CGCTAGGGCA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.29, C:0.10, G:0.30, T:0.32
Consensus pattern (52 bp):
AAAAAATAGAGTTGTTTTTTATGGTGGTGCACAATGATGGTGGCCACAGTGG
Found at i:7452654 original size:924 final size:919
Alignment explanation
Indices: 7450643--7452970 Score: 2570
Period size: 924 Copynumber: 2.5 Consensus size: 919
7450633 TAATTGGTAG
* * * **
7450643 GGGAGTGGTGGATGAGAGGTGGAAAAATAATGCAATAGTTGGTGGTAGATGGCTAAAGTAAATTG
1 GGGAGTGGTGGAGGAGAGG-GGAAAAATAATGCAATAGGTGGTGGTTGATGGCTAAAGTAAATCA
* * * * * *
7450708 AAAATGGAGAGAAAA-AGGGAGGAGCTAAGGA-AGGGACAACAATAGGG-GAAAAGGGTAAGTAA
65 AAAATGGAGAGAAAACAGGAAGGAGCCAAGGAGGGGGACGACAATAGGGAGAAAAGAGTAAGGAA
* * * * *
7450770 TAGTGAAACTAAAGATGTTACTCACTTGTCTAGGTGTAATGAATCAGCATACATGGTAAAGTTGA
130 AAGTGAAACAAAAGATGTTACTTACTTGTCTAGGTGTAATGAATCAGCACACATGGTAAAGATGA
* *
7450835 --AAAAAATGTATGTTGAAGGGACAATGGAGCAGAAAGGGGATCATGTTTGTAAACATATAGTAT
195 TGAAAAAA-GTATGTTG-AGGGACAATGGAGCAAAAAGGGGATCATGTTTGTAAACATATGGTAT
* * * * *
7450898 GTTAACTTATTAAGATAGGAAAGAAATCCTCCCATGCAAGACAACAAATGGACAGA-AAAGGGGG
258 GTTGACTTGTTAAGAAATGAAAGAAATCCTCCCATGCAAGGCAACAAATGGAC-GACAAA-GGGG
**
7450962 ATATTGACTGTTCAAATTTGGCAGAAAAATAAATAAAAATATGGATAGTG-TGAAGACTTGAACC
321 ATATTGACCATTCAAATTTGGCAGAAAAATAAATAAAAATATGGATAGTGTTG-AGACTTGAACC
* * * * *
7451026 TATGACCTTAAGGAAACAAATTAAGCTCTTAAACATTAGACTGACT--C-ACTTGTTCACAGACT
385 TA-GGCCTTAAGGAAACTAATTAAGCTCTTAACCATTAGACTAACTCACTACTTGTTCACAAACT
* * *
7451088 ACAACATTTATTTTAAAAACATGGTGTGACTTTTGCTAAGGTTTGACGGAAAATTGCACAACATA
449 ACAACA-TTATTTTAAAAACATGGTGTGACCTTTGCTAAGGTTTAACGCAAAATTGCACAACATA
* *
7451153 GAAAATAGTGTGAGGGAAGAGATACAAACACATGTCATCAAGGACATCCTCACCACTACTTGATC
513 GAAAATAATGTGAGAGAAGAGATACAAACACATGTCATCAAGGACATCCTCACCACTACTTGATC
*
7451218 ACTAAAAAAATTCAGGAGTGGCCACACTCGGTTCATTAACCTAATTTCTACTAAGCTAGGTTTTA
578 ACTAAAAAAATTCAGGAGTGACCACACTCGGTTCATTAACCTAATTTCTACTAAGCTAGGTTTTA
* ** **** * *
7451283 GAAAAGAAAAAGATCACCAATGCCTTTGGACGCACGGTGGCGGTCCTACGAGAAGTGGATGGGTG
643 GAAAAGAAAAAGATCACCAAAGCCGGTGGACGCACGACAACAGTCCTACGAGAAGCGGATGGGTG
*
7451348 AGGAGTGTAGAAGGCACTTGAGACACTTGAGGCACTAGAGGAAAGAAGGAGAAAATAGAAAGGGA
708 AGGAGTGTAGAAGGCACTT-AGACA--T-A-GCACTAGAGGAAAGAAGGAGAAAATAGAAAGAGA
* * *
7451413 AAAAGAAATGGAGAAGAAGAAGATAAAAAACAGAGTTATTTTCGATGGGGGTGCACAATGATGGT
768 AAAAGAAAT-GACAAGAAGAAGAGAAAAAACAGAATTATTTTCGATGGGGGTGCACAATGATGGT
* ** * ** * * *** *
7451478 GGCCATGATGGTGCTAGGGCAGCAGTTGAGGATTACAAAAGAAATAAATGTCGAAAAAGGGGATA
832 GGCCATGATGGTGCTAAGGCAGCAGCGGAGCAACACAAAAGAAAGAAACGAAAAAAAAGGGGAGA
* * *
7451543 TTCAATGATGGTTCAATTGGAAA
897 TTCAATAATAGTTCAACTGGAAA
* *
7451566 GGGAGTGGTAGAGGAGAAGGGGAAAAATAATGCAATAGGTGGTGGTAT-ATGGCTAAAGTAAATG
1 GGGAGTGGTGGAGGAG-AGGGGAAAAATAATGCAATAGGTGGTGGT-TGATGGCTAAAGTAAATC
* *
7451630 AAAAATGGAGAGAAGACA-GAAGGAGCCAAGGCGGGGGACGACAATAGGGA-AAAAGAGTAAGGA
64 AAAAATGGAGAGAAAACAGGAAGGAGCCAAGGAGGGGGACGACAATAGGGAGAAAAGAGTAAGGA
* * *
7451693 AAAGTTAAACAAAAGATGTTACTTACTTGTCTAGGTGTAATGAATCAACACACATGGAAAAGATG
129 AAAGTGAAACAAAAGATGTTACTTACTTGTCTAGGTGTAATGAATCAGCACACATGGTAAAGATG
* * * * *
7451758 ATGAAAAAAGTATGTTGAGGGTATAATGGAGCAAAAAAGGAATCATGTTTGTAAAAATGTGGTAT
194 ATGAAAAAAGTATGTTGAGGG-ACAATGGAGCAAAAAGGGGATCATGTTTGTAAACATATGGTAT
* * * * *
7451823 GTTGACTTGTTAAGAAATGAAAGAAATCCTCCTATACAAGGCAAAAAATGGACGACAAAAGGGTT
258 GTTGACTTGTTAAGAAATGAAAGAAATCCTCCCATGCAAGGCAACAAATGGACGACAAAGGGGAT
7451888 ATTGACCATTCAAATTTGGCAGAAAAATAAATAAAAATATGG-TGAGTGTTGAGACTTGAACCTA
323 ATTGACCATTCAAATTTGGCAGAAAAATAAATAAAAATATGGAT-AGTGTTGAGACTTGAACCTA
* * * * *
7451952 GGCTTTTAATGAAACTAACTAAGCTTTTAACCATTAGACTAACTCACTTACTTGGTCACAAACTA
387 GGC-CTTAAGGAAACTAATTAAGCTCTTAACCATTAGACTAACTCAC-TACTTGTTCACAAACTA
** * * *
7452017 CAGTATATATTTTAAAAACATGGTGTGACCTTTGCTATGGTTTAATGCAAAATTGC-C-TCGTAT
450 CAACAT-TATTTTAAAAACATGGTGTGACCTTTGCTAAGGTTTAACGCAAAATTGCACAAC--AT
*
7452080 AGAAAATAATGTGAGAGAAGAGATTCAAACACA-GATCATCAAGGACAT-CTCCACCACTACTTG
512 AGAAAATAATGTGAGAGAAGAGATACAAACACATG-TCATCAAGGACATCCT-CACCACTACTTG
* * * * * *
7452143 ATCACTAAAAAAAATT-GGGTGTGACCACTCTTGGTTCATTAATCC-AATTTCTACTAAGTTAGT
575 ATCACT-AAAAAAATTCAGGAGTGACCACACTCGGTTCATTAA-CCTAATTTCTACTAAGCTAGG
* * ** * * * **
7452206 TTTTGGAAAAAGAAAATGATCATGAAAGCCGGTGGAGGCACGACAATAGTTC-A-GCTTAA-CGG
638 TTTTAG-AAAAGAAAAAGATCACCAAAGCCGGTGGACGCACGACAACAGTCCTACG-AGAAGCGG
*** * *
7452268 A-GGAG-GAGG-G-G-AGAAGGGGGTT-G-CA-A-CACTAGAGGAAAGAATGAGAGAAT-GAAGA
701 ATGG-GTGAGGAGTGTAGAAGGCACTTAGACATAGCACTAGAGGAAAGAAGGAGAAAATAGAA-A
* * * ** *
7452323 GAGAAAAAGAAAT-ACAA-AAGAAGAGAGAAAAAGAGAATTCTTTTTGATGGTTGTGCACAATGG
764 GAGAAAAAGAAATGACAAGAAGAAGAGA-AAAAACAGAATTATTTTCGATGGGGGTGCACAATGA
* * * * * * * *
7452386 TGGTGGCCATAATGTTGAACAGTGACACTAAGGCGGCGGCGGAGCAACACAGAGGAGAGGAGCGA
828 TGGTGGCC---ATGATG----GTG---CTAAGGCAGCAGCGGAGCAACACAAAAGAAAGAAACGA
*** * * *
7452451 AAAAAAAGGGGAGATTTGGTAATAGTTCAGCTGGCAT
883 AAAAAAAGGGGAGATTCAATAATAGTTCAACTGGAAA
* * * ** * *
7452488 GGGAATGGTGGAGGAGAGGACGAAAAATAGTGCAGCAGGTGATGGTTGATGGCTAAAGTAAAACA
1 GGGAGTGGTGGAGGAGAGG-GGAAAAATAATGCAATAGGTGGTGGTTGATGGCTAAAGTAAATCA
*
7452553 AAAATGGAGCA-AAAACAGGAAGGAGCCAAGGAGGGGGACGACAATAGGGAGAGAAGAGTAAGGA
65 AAAATGGAG-AGAAAACAGGAAGGAGCCAAGGAGGGGGACGACAATAGGGAGAAAAGAGTAAGGA
* * * * *
7452617 AAAGTGAAAAAAAATATGTTACTTACTTTTCTAGGTGTAATGAATTAGCACAAATGGTAAAGATG
129 AAAGTGAAACAAAAGATGTTACTTACTTGTCTAGGTGTAATGAATCAGCACACATGGTAAAGATG
* *
7452682 ATGAAAAAGGTATGCTGATGGGACAATGGAGCAAAAAGGGGATCATGTTTGTAAACATATGGTAT
194 ATGAAAAAAGTATGTTGA-GGGACAATGGAGCAAAAAGGGGATCATGTTTGTAAACATATGGTAT
* * * *
7452747 GTTGACTTGTTAATAAATGAAAGAAATGCTCCCATGCAAGGCAACAAGTGGACGACAAAGGGGCG
258 GTTGACTTGTTAAGAAATGAAAGAAATCCTCCCATGCAAGGCAACAAATGGACGACAAAGGGG-A
*
7452812 TATTGACCATTCAAATTT-GCAAGAAAAATAAATAAAAATATGGATAGTGTGGAGACTTGAACCT
322 TATTGACCATTCAAATTTGGC-AGAAAAATAAATAAAAATATGGATAGTGTTGAGACTTGAACCT
*
7452876 AGGACCTTAAGGAAACTAATTAAGCTCTTAACCATTAGGCTAACTCACCTACTTGTTCACAAACT
386 AGG-CCTTAAGGAAACTAATTAAGCTCTTAACCATTAGACTAACTCA-CTACTTGTTCACAAACT
7452941 ACAACACTTATTTTAAAAACATGGTGTGAC
449 ACAACA-TTATTTTAAAAACATGGTGTGAC
7452971 ATTTACTACT
Statistics
Matches: 1180, Mismatches: 175, Indels: 98
0.81 0.12 0.07
Matches are distributed among these distances:
911 8 0.01
912 40 0.03
913 3 0.00
914 35 0.03
915 5 0.00
916 1 0.00
919 3 0.00
920 2 0.00
921 5 0.00
922 111 0.09
923 122 0.10
924 369 0.31
925 237 0.20
926 18 0.02
927 10 0.01
928 169 0.14
929 42 0.04
ACGTcount: A:0.40, C:0.12, G:0.26, T:0.23
Consensus pattern (919 bp):
GGGAGTGGTGGAGGAGAGGGGAAAAATAATGCAATAGGTGGTGGTTGATGGCTAAAGTAAATCAA
AAATGGAGAGAAAACAGGAAGGAGCCAAGGAGGGGGACGACAATAGGGAGAAAAGAGTAAGGAAA
AGTGAAACAAAAGATGTTACTTACTTGTCTAGGTGTAATGAATCAGCACACATGGTAAAGATGAT
GAAAAAAGTATGTTGAGGGACAATGGAGCAAAAAGGGGATCATGTTTGTAAACATATGGTATGTT
GACTTGTTAAGAAATGAAAGAAATCCTCCCATGCAAGGCAACAAATGGACGACAAAGGGGATATT
GACCATTCAAATTTGGCAGAAAAATAAATAAAAATATGGATAGTGTTGAGACTTGAACCTAGGCC
TTAAGGAAACTAATTAAGCTCTTAACCATTAGACTAACTCACTACTTGTTCACAAACTACAACAT
TATTTTAAAAACATGGTGTGACCTTTGCTAAGGTTTAACGCAAAATTGCACAACATAGAAAATAA
TGTGAGAGAAGAGATACAAACACATGTCATCAAGGACATCCTCACCACTACTTGATCACTAAAAA
AATTCAGGAGTGACCACACTCGGTTCATTAACCTAATTTCTACTAAGCTAGGTTTTAGAAAAGAA
AAAGATCACCAAAGCCGGTGGACGCACGACAACAGTCCTACGAGAAGCGGATGGGTGAGGAGTGT
AGAAGGCACTTAGACATAGCACTAGAGGAAAGAAGGAGAAAATAGAAAGAGAAAAAGAAATGACA
AGAAGAAGAGAAAAAACAGAATTATTTTCGATGGGGGTGCACAATGATGGTGGCCATGATGGTGC
TAAGGCAGCAGCGGAGCAACACAAAAGAAAGAAACGAAAAAAAAGGGGAGATTCAATAATAGTTC
AACTGGAAA
Found at i:7462534 original size:19 final size:19
Alignment explanation
Indices: 7462510--7462546 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7462500 TGCATGCATA
*
7462510 AATCGGTAACATGTAACCT
1 AATCGGTAACATATAACCT
*
7462529 AATCGGTAGCATATAACC
1 AATCGGTAACATATAACC
7462547 CTGAATCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (19 bp):
AATCGGTAACATATAACCT
Found at i:7465552 original size:49 final size:49
Alignment explanation
Indices: 7465374--7465880 Score: 860
Period size: 49 Copynumber: 10.6 Consensus size: 49
7465364 TATTTGAATA
7465374 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
7465421 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
7465468 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
7465515 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
7465564 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
7465613 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
7465660 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
7465709 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
7465758 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
7465807 AATGTGAAAGTG--TATATATGTGA-CAGAGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAG-GCCTAATGGCCGATGTGATG
*
7465854 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
7465881 TCCCGAAGGG
Statistics
Matches: 445, Mismatches: 7, Indels: 15
0.95 0.01 0.03
Matches are distributed among these distances:
46 2 0.00
47 197 0.44
48 3 0.01
49 243 0.55
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:7465631 original size:145 final size:143
Alignment explanation
Indices: 7465374--7465880 Score: 862
Period size: 145 Copynumber: 3.5 Consensus size: 143
7465364 TATTTGAATA
7465374 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
7465437 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
7465502 GGCCGATGTGATG
131 GGCCGATGTGATG
7465515 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
7465580 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
64 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
7465645 ATGGCCGATGTGATG
129 ATGGCCGATGTGATG
7465660 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
7465725 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
64 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
7465790 TAATGGCCGATGTGATG
127 TAATGGCCGATGTGATG
* * * * * *
7465807 AATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-
1 AATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
7465870 A-ATGTGATAAG
65 ATATGTGATAAG
7465881 TCCCGAAGGG
Statistics
Matches: 353, Mismatches: 6, Indels: 12
0.95 0.02 0.03
Matches are distributed among these distances:
141 12 0.03
143 57 0.16
144 3 0.01
145 234 0.66
147 47 0.13
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
GGCCGATGTGATG
Found at i:7467255 original size:91 final size:90
Alignment explanation
Indices: 7467080--7467263 Score: 230
Period size: 91 Copynumber: 2.0 Consensus size: 90
7467070 AGTTTCTATA
* * *
7467080 GAAACAAACGGCATCAGTATTGAAGCCCTGTACAGGGAGATATCCGAATTGTAATGCATGAAGGT
1 GAAACAAACGGAATCAGTATTGAAGCCCTGTACAGGGAGATATCCGAATCGTAAT-CATGAAAGT
*
7467145 TAGTGTAGTCGCATGCTGTAACAGGG
65 TAGTGTAGTCGCATCCTGTAACAGGG
* *
7467171 GAAACAAACGGAATCAGTATTGAAGCTCTGTGCAGGGAGATATCC-AAGTCGTAAT-ATGCAAAG
1 GAAACAAACGGAATCAGTATTGAAGCCCTGTACAGGGAGATATCCGAA-TCGTAATCATG-AAAG
* *
7467234 TTCAGTGTAGTTG-ATCCCTGTAACATGG
64 TT-AGTGTAGTCGCAT-CCTGTAACAGGG
7467262 GA
1 GA
7467264 GACTTTGACT
Statistics
Matches: 81, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
89 3 0.04
90 9 0.11
91 69 0.85
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (90 bp):
GAAACAAACGGAATCAGTATTGAAGCCCTGTACAGGGAGATATCCGAATCGTAATCATGAAAGTT
AGTGTAGTCGCATCCTGTAACAGGG
Found at i:7471017 original size:3 final size:3
Alignment explanation
Indices: 7471009--7471061 Score: 83
Period size: 3 Copynumber: 18.0 Consensus size: 3
7470999 AGGTATTTAC
7471009 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TT- TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7471055 TCTA TTA
1 T-TA TTA
7471062 ATTGAGATAA
Statistics
Matches: 47, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
2 4 0.09
3 40 0.85
4 3 0.06
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:7480383 original size:41 final size:41
Alignment explanation
Indices: 7480326--7480403 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
7480316 TCTTACCGAA
7480326 GCCTTATTGTTTCATAATCTCAGTAACTATAAGCTTGCCGT
1 GCCTTATTGTTTCATAATCTCAGTAACTATAAGCTTGCCGT
*
7480367 GCCTTATTTTTTCATAATCTCAGTAACTATAAGCTTG
1 GCCTTATTGTTTCATAATCTCAGTAACTATAAGCTTG
7480404 GCGTACATCC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.26, C:0.21, G:0.13, T:0.41
Consensus pattern (41 bp):
GCCTTATTGTTTCATAATCTCAGTAACTATAAGCTTGCCGT
Found at i:7480607 original size:42 final size:42
Alignment explanation
Indices: 7480529--7480727 Score: 114
Period size: 42 Copynumber: 4.6 Consensus size: 42
7480519 TAAGATGCCA
* * * * *
7480529 ATGCCATGTCCCATACATGGTCTTACATGGGA-TCTCACATCG
1 ATGCCATATCCCAGATATGGTCTTACA-CGAATTCTCACATCG
* **
7480571 ATGCCATATCCCAGATATGGTCTTATACGAATTCTCATTTCG
1 ATGCCATATCCCAGATATGGTCTTACACGAATTCTCACATCG
* * ** * *** *
7480613 ATGCCATGTTCCAGACGTGGTCTTACACGAAATCTTGTATCA
1 ATGCCATATCCCAGATATGGTCTTACACGAATTCTCACATCG
** * * *
7480655 ATGCTGTATCCCAGATATGGTCTCACATG-ATAACTCATACTGATGCTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAT-TCTC--AC--AT-C-G
7480703 ATGCCATATCCCAGATATGGTCTTA
1 ATGCCATATCCCAGATATGGTCTTA
7480728 TACGGTATCT
Statistics
Matches: 114, Mismatches: 35, Indels: 10
0.72 0.22 0.06
Matches are distributed among these distances:
41 3 0.03
42 86 0.75
46 2 0.02
47 1 0.01
48 22 0.19
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAATTCTCACATCG
Found at i:7484383 original size:52 final size:51
Alignment explanation
Indices: 7484146--7484409 Score: 167
Period size: 52 Copynumber: 5.1 Consensus size: 51
7484136 GTAAATGTGA
* * *** *
7484146 AAGTCCATTAGGACAATCTAATTGGAAAGTCCGTCGGGACAATCTAATGTGG
1 AAGTCCGTCAGGACAATCTAATTGGAAAGTCTACCAGGACAATCTAATG-GG
* * * * * **
7484198 AAGCCCATTAGGACAATCTAATTAGG-AAGTCTGCTAGGATGATCTAATGTGG
1 AAGTCCGTCAGGACAATCTAATT-GGAAAGTCTACCAGGACAATCTAATG-GG
* * * * * * ** *
7484250 -ACTCTTGTCAAGACAATCCAATT-GAGAAGTCTACAAAGATTATATAATGTGG
1 AAGTC-CGTCAGGACAATCTAATTGGA-AAGTCTACCAGGACAATCTAATG-GG
* *
7484302 -AGTCTGTCAGGACAATCTAATTGGAAAGTCTGCCAGGACAATCTAATGAGG
1 AAGTCCGTCAGGACAATCTAATTGGAAAGTCTACCAGGACAATCTAATG-GG
* * * **
7484353 AAGTCCGTCCGGACAATCTATTTGGGAAGTCTATTAGGACAATCTAATTGGG
1 AAGTCCGTCAGGACAATCTAATTGGAAAGTCTACCAGGACAATCTAA-TGGG
7484405 AAGTC
1 AAGTC
7484410 TATAAGGTTG
Statistics
Matches: 169, Mismatches: 36, Indels: 14
0.77 0.16 0.06
Matches are distributed among these distances:
50 1 0.01
51 37 0.22
52 127 0.75
53 4 0.02
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (51 bp):
AAGTCCGTCAGGACAATCTAATTGGAAAGTCTACCAGGACAATCTAATGGG
Found at i:7484411 original size:26 final size:26
Alignment explanation
Indices: 7484146--7484412 Score: 125
Period size: 26 Copynumber: 10.3 Consensus size: 26
7484136 GTAAATGTGA
* *
7484146 AAGTCCATTAGGACAATCTAATTGGA
1 AAGTCTATTAGGACAATCTAATTGGG
** **
7484172 AAGTCCGTCGGGACAATCTAA-TGTGG
1 AAGTCTATTAGGACAATCTAATTG-GG
* * *
7484198 AAGCCCATTAGGACAATCTAATTAGG
1 AAGTCTATTAGGACAATCTAATTGGG
** **
7484224 AAGTCTGCTAGGATGATCTAA-TGTGG
1 AAGTCTATTAGGACAATCTAATTG-GG
* * * *
7484250 -ACTCT-TGTCAAGACAATCCAATTGAG
1 AAGTCTAT-T-AGGACAATCTAATTGGG
** * ** *
7484276 AAGTCTACAAAGATTATATAA-TGTGG
1 AAGTCTATTAGGACAATCTAATTG-GG
* * *
7484302 -AGTCTGTCAGGACAATCTAATTGGA
1 AAGTCTATTAGGACAATCTAATTGGG
***
7484327 AAGTCTGCCAGGACAATCTAA-TGAGG
1 AAGTCTATTAGGACAATCTAATTG-GG
** ** *
7484353 AAGTCCGTCCGGACAATCTATTTGGG
1 AAGTCTATTAGGACAATCTAATTGGG
7484379 AAGTCTATTAGGACAATCTAATTGGG
1 AAGTCTATTAGGACAATCTAATTGGG
7484405 AAGTCTAT
1 AAGTCTAT
7484413 AAGGTTGATT
Statistics
Matches: 178, Mismatches: 50, Indels: 26
0.70 0.20 0.10
Matches are distributed among these distances:
25 26 0.15
26 143 0.80
27 9 0.05
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.27
Consensus pattern (26 bp):
AAGTCTATTAGGACAATCTAATTGGG
Found at i:7498240 original size:35 final size:35
Alignment explanation
Indices: 7498194--7498263 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
7498184 CTTACTTGTA
7498194 AACACATATCAGAATCATATAACGATGCCATGGTC
1 AACACATATCAGAATCATATAACGATGCCATGGTC
* *
7498229 AACACATATCAGAATTATATCACGATGCCATGGTC
1 AACACATATCAGAATCATATAACGATGCCATGGTC
7498264 TTACTCGCAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.39, C:0.23, G:0.14, T:0.24
Consensus pattern (35 bp):
AACACATATCAGAATCATATAACGATGCCATGGTC
Found at i:7502634 original size:35 final size:35
Alignment explanation
Indices: 7502594--7502797 Score: 219
Period size: 35 Copynumber: 5.8 Consensus size: 35
7502584 AGGTAAGTAT
* *
7502594 ATGTGAGGTTATATTGAACTTGTATATTCGGCTGC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
* *
7502629 ATGTGAGGTTATATTGAACTTGTTTATTCGATTAC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
*
7502664 ATGTGAGCTTATATTGAACTTGTATATTCGGTTAC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
** * * * * *
7502699 ACATGAGATTATATTGAATTTGTATATTTGGTCAT
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
* * * * * *
7502734 ATGAGATGTTTTATTGAACTTGAACATTAGGTTAC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
* * *
7502769 ATGTGATGATATATTGAACTTATATATTC
1 ATGTGAGGTTATATTGAACTTGTATATTC
7502798 AGCCATATGA
Statistics
Matches: 136, Mismatches: 33, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
35 136 1.00
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (35 bp):
ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
Found at i:7502784 original size:105 final size:105
Alignment explanation
Indices: 7502597--7502797 Score: 246
Period size: 105 Copynumber: 1.9 Consensus size: 105
7502587 TAAGTATATG
* * *** *
7502597 TGAGGTTATATTGAACTTGTATATTCGGCTGCATGTGAGGTTATATTGAACTTGTTTATTCGATT
1 TGAGATTATATTGAACTTGTATATTCGGCTGCATATGAGGTTATATTGAACTTGAACATTAGATT
* *
7502662 ACATGTGAGCTTATATTGAACTTGTATATTCGGTTACACA
66 ACATGTGAGCATATATTGAACTTATATATTCGGTTACACA
* * * *
7502702 TGAGATTATATTGAATTTGTATATTTGG-T-CATATGAGATGTTTTATTGAACTTGAACATTAGG
1 TGAGATTATATTGAACTTGTATATTCGGCTGCATATGAG--GTTATATTGAACTTGAACATTAGA
7502765 TTACATGTGATG-ATATATTGAACTTATATATTC
64 TTACATGTGA-GCATATATTGAACTTATATATTC
7502798 AGCCATATGA
Statistics
Matches: 81, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
103 7 0.09
104 1 0.01
105 72 0.89
106 1 0.01
ACGTcount: A:0.28, C:0.09, G:0.19, T:0.43
Consensus pattern (105 bp):
TGAGATTATATTGAACTTGTATATTCGGCTGCATATGAGGTTATATTGAACTTGAACATTAGATT
ACATGTGAGCATATATTGAACTTATATATTCGGTTACACA
Found at i:7508050 original size:51 final size:51
Alignment explanation
Indices: 7507986--7508121 Score: 155
Period size: 51 Copynumber: 2.7 Consensus size: 51
7507976 TGGAAACATG
*
7507986 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * * ** * * ** *
7508037 ATCTTATAAGATATTATTTTATAAGATTACATATCTTATCTAAGATATGTA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* *
7508088 ATCTTAGAAGATATGATATTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATATTATAATCTTAGAGAT
7508122 TTGATGGTAG
Statistics
Matches: 66, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
51 66 1.00
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.41
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
Found at i:7514630 original size:50 final size:51
Alignment explanation
Indices: 7514575--7514677 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 51
7514565 CTAGGACATG
7514575 ATGTTGTTGATGGAGTTACACACC-ATCTATAATCTTGGACCTGGTATCCA
1 ATGTTGTTGATGGAGTTACACACCAATCTATAATCTTGGACCTGGTATCCA
7514625 ATGTTGTTGATGGAGTTACACACCATATCTATAATCTTGGACCTGGTATCCA
1 ATGTTGTTGATGGAGTTACACACCA-ATCTATAATCTTGGACCTGGTATCCA
7514677 A
1 A
7514678 ATATGTCTCA
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
50 24 0.47
52 27 0.53
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (51 bp):
ATGTTGTTGATGGAGTTACACACCAATCTATAATCTTGGACCTGGTATCCA
Found at i:7515121 original size:40 final size:41
Alignment explanation
Indices: 7515076--7515206 Score: 151
Period size: 41 Copynumber: 3.2 Consensus size: 41
7515066 CCTTTGCAAT
* * *
7515076 AAAACGCCGC-AAAAACAGAACAATAGCGGTGTTTTTGATC
1 AAAACGCCGCGAAAAACTGAACAATAGCGGCGTTTTTGACC
* *
7515116 AAAACGCCGCGAAAAACTGAGCAATAGCGGCGTTTTTGGCC
1 AAAACGCCGCGAAAAACTGAACAATAGCGGCGTTTTTGACC
* * * *
7515157 CAAACGCTGCTAAAAACTGAACAATAGCGGCGCTTTTAGA--
1 AAAACGCCGCGAAAAACTGAACAATAGCGGCG-TTTTTGACC
7515197 AAAACGCCGC
1 AAAACGCCGC
7515207 TATAGGTCGA
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
40 18 0.24
41 53 0.70
42 5 0.07
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.18
Consensus pattern (41 bp):
AAAACGCCGCGAAAAACTGAACAATAGCGGCGTTTTTGACC
Found at i:7515230 original size:41 final size:41
Alignment explanation
Indices: 7515181--7515452 Score: 330
Period size: 41 Copynumber: 6.6 Consensus size: 41
7515171 AACTGAACAA
7515181 TAGCGGCGCTTTTAGAAAAACGCCGCTATAGGTCGAGGTTT
1 TAGCGGCGCTTTTAGAAAAACGCCGCTATAGGTCGAGGTTT
* * * * *
7515222 TAACGGCGCTTCTGGAAAAACGCTGCTATAGGTAGAGGTTT
1 TAGCGGCGCTTTTAGAAAAACGCCGCTATAGGTCGAGGTTT
*
7515263 TAGCGGCGCTTTTACAAAAACGCCGCTATAGGTCGAGGTTT
1 TAGCGGCGCTTTTAGAAAAACGCCGCTATAGGTCGAGGTTT
* * * * * *
7515304 TAGCGGCACTTCTGGAGAAACGCTGCTATAGGTAGAGGTTT
1 TAGCGGCGCTTTTAGAAAAACGCCGCTATAGGTCGAGGTTT
* * * *
7515345 TAGTGGCGCTTTT-GTAAAAACGCCGCTATATGCCGATGTTT
1 TAGCGGCGCTTTTAG-AAAAACGCCGCTATAGGTCGAGGTTT
* * * * *
7515386 TAGCTGCTCTTTTGGAAAAACGCCGCTATAGGCCGATGTTT
1 TAGCGGCGCTTTTAGAAAAACGCCGCTATAGGTCGAGGTTT
*
7515427 TAGCGGCGCTTTTAGGAAAACGCCGC
1 TAGCGGCGCTTTTAGAAAAACGCCGC
7515453 AAAAAAGTAA
Statistics
Matches: 194, Mismatches: 35, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
40 1 0.01
41 192 0.99
42 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (41 bp):
TAGCGGCGCTTTTAGAAAAACGCCGCTATAGGTCGAGGTTT
Found at i:7515414 original size:82 final size:82
Alignment explanation
Indices: 7515181--7515452 Score: 384
Period size: 82 Copynumber: 3.3 Consensus size: 82
7515171 AACTGAACAA
* *
7515181 TAGCGGCGCTTTTAGAAAAACGCCGCTATAGGTCGAGGTTTTAACGGCGCTTCTGGAAAAACGCT
1 TAGCGGCGCTTTTAGAAAAACGCCGCTATAGGTCGAGGTTTTAGCGGCACTTCTGGAAAAACGCT
7515246 GCTATAGGTAGAGGTTT
66 GCTATAGGTAGAGGTTT
* *
7515263 TAGCGGCGCTTTTACAAAAACGCCGCTATAGGTCGAGGTTTTAGCGGCACTTCTGGAGAAACGCT
1 TAGCGGCGCTTTTAGAAAAACGCCGCTATAGGTCGAGGTTTTAGCGGCACTTCTGGAAAAACGCT
7515328 GCTATAGGTAGAGGTTT
66 GCTATAGGTAGAGGTTT
* * * * * * *
7515345 TAGTGGCGCTTTT-GTAAAAACGCCGCTATATGCCGATGTTTTAGCTGCTCTTTTGGAAAAACGC
1 TAGCGGCGCTTTTAG-AAAAACGCCGCTATAGGTCGAGGTTTTAGCGGCACTTCTGGAAAAACGC
* ** *
7515409 CGCTATAGGCCGATGTTT
65 TGCTATAGGTAGAGGTTT
*
7515427 TAGCGGCGCTTTTAGGAAAACGCCGC
1 TAGCGGCGCTTTTAGAAAAACGCCGC
7515453 AAAAAAGTAA
Statistics
Matches: 169, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
82 168 0.99
83 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (82 bp):
TAGCGGCGCTTTTAGAAAAACGCCGCTATAGGTCGAGGTTTTAGCGGCACTTCTGGAAAAACGCT
GCTATAGGTAGAGGTTT
Found at i:7515790 original size:18 final size:18
Alignment explanation
Indices: 7515762--7515811 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 18
7515752 TCCCTTGTTA
7515762 TATATATATATATTAA-ACT
1 TATA-ATATATATTAAGA-T
*
7515781 TCTAATATATATTAAGAT
1 TATAATATATATTAAGAT
7515799 TATAATATATATT
1 TATAATATATATT
7515812 TAGGGTGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 24 0.86
19 4 0.14
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (18 bp):
TATAATATATATTAAGAT
Found at i:7516248 original size:15 final size:15
Alignment explanation
Indices: 7516228--7516262 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
7516218 GATTTTAATG
*
7516228 TATAAGATAAATGTA
1 TATAAGATAAATATA
7516243 TATAAGATAAATATA
1 TATAAGATAAATATA
7516258 TATAA
1 TATAA
7516263 ATTATTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (15 bp):
TATAAGATAAATATA
Found at i:7516301 original size:24 final size:23
Alignment explanation
Indices: 7516234--7516301 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 23
7516224 AATGTATAAG
* *
7516234 ATAAATGTATATAAGATAAATATAT
1 ATAAAT-TATATATGA-AAAAATAT
* *
7516259 ATAAATTATTATTTTAAAAAATAT
1 ATAAATTA-TATATGAAAAAATAT
7516283 ATAAATATATATATGAAAA
1 ATAAAT-TATATATGAAAA
7516302 GTGGTTTAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
24 23 0.66
25 12 0.34
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (23 bp):
ATAAATTATATATGAAAAAATAT
Found at i:7518902 original size:49 final size:50
Alignment explanation
Indices: 7518829--7518929 Score: 186
Period size: 49 Copynumber: 2.0 Consensus size: 50
7518819 CTTACTATCT
7518829 TTCCTTAGAATTTTAACTATGATTTTTAGTGGAAAATCCGGCAACTTCGG
1 TTCCTTAGAATTTTAACTATGATTTTTAGTGGAAAATCCGGCAACTTCGG
*
7518879 TTCC-TAGAATTTTAGCTATGATTTTTAGTGGAAAATCCGGCAACTTCGG
1 TTCCTTAGAATTTTAACTATGATTTTTAGTGGAAAATCCGGCAACTTCGG
7518928 TT
1 TT
7518930 ATTCCAACAA
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 46 0.92
50 4 0.08
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.39
Consensus pattern (50 bp):
TTCCTTAGAATTTTAACTATGATTTTTAGTGGAAAATCCGGCAACTTCGG
Found at i:7526166 original size:635 final size:635
Alignment explanation
Indices: 7524956--7526177 Score: 2399
Period size: 635 Copynumber: 1.9 Consensus size: 635
7524946 TCGAGAACAN
7524956 TGTGTGTTTGTGTCTCTATATATGTATGTATTTGGTACTAGATGAAAGCTTTACTCCAGTTTTGA
1 TGTGTGTTTGTGTCTCTATATATGTATGTATTTGGTACTAGATGAAAGCTTTACTCCAGTTTTGA
7525021 AATATAGACCAGGTTTTGCATACATTGATCATTTTCTGGCTCTTTTCCTTCGAATACATGGTTCT
66 AATATAGACCAGGTTTTGCATACATTGATCATTTTCTGGCTCTTTTCCTTCGAATACATGGTTCT
7525086 CTTGAAACTAAATGCTCAGGTACTTTCTGCATATTCCGTGATTCTTATTAGATAAGTTATAAATC
131 CTTGAAACTAAATGCTCAGGTACTTTCTGCATATTCCGTGATTCTTATTAGATAAGTTATAAATC
7525151 AACAGTTATGTTAGTTTTGATCAAGGCCTCTGTAAACATAAAGTTGGTATTCTGGTTAGGAGAAG
196 AACAGTTATGTTAGTTTTGATCAAGGCCTCTGTAAACATAAAGTTGGTATTCTGGTTAGGAGAAG
7525216 TTAATGTTTATGAGTTTTGTGGAGTATGATTCTGCACATGCAAAGTTGGTTTGTTTAAAGCTGTG
261 TTAATGTTTATGAGTTTTGTGGAGTATGATTCTGCACATGCAAAGTTGGTTTGTTTAAAGCTGTG
7525281 CATTTTCATGTTTACATACTAATGGTGATTCCATTTTTGTTTTTTAGATGTTCTTTTGGTCTGTT
326 CATTTTCATGTTTACATACTAATGGTGATTCCATTTTTGTTTTTTAGATGTTCTTTTGGTCTGTT
7525346 TTCATGTTTCTATCCAACTTATGTGTTTACTGTGCAGTTTTGCCATATTTTGCTAAGGTGTATAG
391 TTCATGTTTCTATCCAACTTATGTGTTTACTGTGCAGTTTTGCCATATTTTGCTAAGGTGTATAG
*
7525411 CTTCATTGGCAGTGTCTTTGATCCTGGTACAAGTGGGCACTTGCAAAACTGATATAGGTAAAGTT
456 CTTCATTGGCAGTGTCTTTGATCCTGGTACAAGTGGGAACTTGCAAAACTGATATAGGTAAAGTT
7525476 TCTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTACATCTGTTCTAGGTA
521 TCTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTACATCTGTTCTAGGTA
7525541 CTTATCTTTTATTTGCAAGAAACAGATTTAGGTAATGGAAGATGTATGCC
586 CTTATCTTTTATTTGCAAGAAACAGATTTAGGTAATGGAAGATGTATGCC
7525591 TGTGTGTTTGTGTCTCTATATATGTATGTATTTGGTACTAGATGAAAGCTTTACTCCAGTTTTGA
1 TGTGTGTTTGTGTCTCTATATATGTATGTATTTGGTACTAGATGAAAGCTTTACTCCAGTTTTGA
*
7525656 AATATAGACCAGGTTTTGCATACATTGATCATTTTCTGGCTTTTTTCCTTCGAATACATGGTTCT
66 AATATAGACCAGGTTTTGCATACATTGATCATTTTCTGGCTCTTTTCCTTCGAATACATGGTTCT
* *
7525721 CTTGAAATTAAATGCTCAGGTACTTTCTGCATATTCTGTGATTCTTATTAGATAAGTTATAAATC
131 CTTGAAACTAAATGCTCAGGTACTTTCTGCATATTCCGTGATTCTTATTAGATAAGTTATAAATC
7525786 AACAGTTATGTTAGTTTTGATCAAGGCCTCTGTAAACATAAAGTTGGTATTCTGGTTAGGAGAAG
196 AACAGTTATGTTAGTTTTGATCAAGGCCTCTGTAAACATAAAGTTGGTATTCTGGTTAGGAGAAG
7525851 TTAATGTTTATGAGTTTTGTGGAGTATGATTCTGCACATGCAAAGTTGGTTTGTTTAAAGCTGTG
261 TTAATGTTTATGAGTTTTGTGGAGTATGATTCTGCACATGCAAAGTTGGTTTGTTTAAAGCTGTG
7525916 CATTTTCATGTTTACATACTAATGGTGATTCCATTTTTGTTTTTTAGATGTTCTTTTGGTCTGTT
326 CATTTTCATGTTTACATACTAATGGTGATTCCATTTTTGTTTTTTAGATGTTCTTTTGGTCTGTT
*
7525981 TTCATGTTTCTATCCAACTTCTGTGTTTACTGTGCAGTTTTGCCATATTTTGCTAAGGTGTATAG
391 TTCATGTTTCTATCCAACTTATGTGTTTACTGTGCAGTTTTGCCATATTTTGCTAAGGTGTATAG
7526046 CTTCATTGGCAGTGTCTTTGATCCTGGTACAAGTGGGAACTTGCAAAACTGATATAGGTAAAGTT
456 CTTCATTGGCAGTGTCTTTGATCCTGGTACAAGTGGGAACTTGCAAAACTGATATAGGTAAAGTT
7526111 TCTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTACATCTGTTCTAGGTA
521 TCTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTACATCTGTTCTAGGTA
7526176 CT
586 CT
7526178 ATCGAGCACC
Statistics
Matches: 582, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
635 582 1.00
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.42
Consensus pattern (635 bp):
TGTGTGTTTGTGTCTCTATATATGTATGTATTTGGTACTAGATGAAAGCTTTACTCCAGTTTTGA
AATATAGACCAGGTTTTGCATACATTGATCATTTTCTGGCTCTTTTCCTTCGAATACATGGTTCT
CTTGAAACTAAATGCTCAGGTACTTTCTGCATATTCCGTGATTCTTATTAGATAAGTTATAAATC
AACAGTTATGTTAGTTTTGATCAAGGCCTCTGTAAACATAAAGTTGGTATTCTGGTTAGGAGAAG
TTAATGTTTATGAGTTTTGTGGAGTATGATTCTGCACATGCAAAGTTGGTTTGTTTAAAGCTGTG
CATTTTCATGTTTACATACTAATGGTGATTCCATTTTTGTTTTTTAGATGTTCTTTTGGTCTGTT
TTCATGTTTCTATCCAACTTATGTGTTTACTGTGCAGTTTTGCCATATTTTGCTAAGGTGTATAG
CTTCATTGGCAGTGTCTTTGATCCTGGTACAAGTGGGAACTTGCAAAACTGATATAGGTAAAGTT
TCTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTACATCTGTTCTAGGTA
CTTATCTTTTATTTGCAAGAAACAGATTTAGGTAATGGAAGATGTATGCC
Found at i:7527300 original size:373 final size:373
Alignment explanation
Indices: 7526615--7527902 Score: 2540
Period size: 373 Copynumber: 3.5 Consensus size: 373
7526605 CTTGTCCATT
* * *
7526615 AAAATTATAACAATAGCTGACTTTCTCTCCAACCTTATTTTAGATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
7526680 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
*
7526745 GTAACAACACCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
7526810 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
7526875 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
7526940 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
7526988 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
7527053 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
7527118 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
7527183 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
7527248 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
7527313 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
7527361 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
7527426 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
7527491 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
7527556 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
7527621 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
7527686 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
7527734 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
7527799 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
7527864 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAA
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAA
7527903 TGTTTCAATT
Statistics
Matches: 911, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
373 911 1.00
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (373 bp):
AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
Found at i:7528017 original size:24 final size:24
Alignment explanation
Indices: 7527990--7528057 Score: 84
Period size: 24 Copynumber: 2.8 Consensus size: 24
7527980 ATTATTATTG
* *
7527990 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAA
*
7528014 AAATATTATTC-TCCGTTTTATTAA
1 AAATATTA-TCGTCCGTTTTATCAA
*
7528038 AAATATTATCGTCCATTTTA
1 AAATATTATCGTCCGTTTTA
7528058 CCATTTAAGT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
23 2 0.05
24 34 0.89
25 2 0.05
ACGTcount: A:0.31, C:0.18, G:0.06, T:0.46
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAA
Found at i:7528278 original size:15 final size:15
Alignment explanation
Indices: 7528234--7528289 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
7528224 AATGACATGT
7528234 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
7528250 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
7528263 ATATTATTTAATTAA
1 ATATTATTTAATTAA
7528278 ATATTATTTAAT
1 ATATTATTTAAT
7528290 CCCGCTACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 3 0.08
13 7 0.19
14 2 0.06
15 16 0.44
16 5 0.14
17 3 0.08
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:7528406 original size:9 final size:9
Alignment explanation
Indices: 7528394--7528619 Score: 143
Period size: 9 Copynumber: 24.6 Consensus size: 9
7528384 TATTTGATAT
*
7528394 CATAATTTA
1 CATAACTTA
7528403 CATAACTTA
1 CATAACTTA
* *
7528412 TATAACATA
1 CATAACTTA
*
7528421 TATAACTTA
1 CATAACTTA
7528430 CATAACTTA
1 CATAACTTA
* *
7528439 TATAACATA
1 CATAACTTA
7528448 CATAACTTA
1 CATAACTTA
*
7528457 TATAACTTA
1 CATAACTTA
*
7528466 TATAACTTA
1 CATAACTTA
* *
7528475 GATAA-ATA
1 CATAACTTA
*
7528483 TATAACTTA
1 CATAACTTA
7528492 CATAACTTA
1 CATAACTTA
7528501 CATAATACTTA
1 CAT-A-ACTTA
* *
7528512 AATATATTTTATA
1 CATA-A--CT-TA
*
7528525 TCATAATTTA
1 -CATAACTTA
7528535 CATAACTTA
1 CATAACTTA
7528544 CATAACTTA
1 CATAACTTA
*
7528553 TATAACTTA
1 CATAACTTA
* *
7528562 GATAA-ATA
1 CATAACTTA
* *
7528570 TATAATTTA
1 CATAACTTA
*
7528579 CATAA-ATA
1 CATAACTTA
* * *
7528587 TATATCATA
1 CATAACTTA
*
7528596 TCATAAATTA
1 -CATAACTTA
7528606 CATAACTTA
1 CATAACTTA
7528615 CATAA
1 CATAA
7528620 TACTTAAATA
Statistics
Matches: 174, Mismatches: 33, Indels: 20
0.77 0.15 0.09
Matches are distributed among these distances:
8 17 0.10
9 130 0.75
10 11 0.06
11 9 0.05
12 1 0.01
13 3 0.02
14 3 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:7528416 original size:18 final size:18
Alignment explanation
Indices: 7528394--7528619 Score: 161
Period size: 18 Copynumber: 12.3 Consensus size: 18
7528384 TATTTGATAT
* *
7528394 CATAATTTACATAACTTA
1 CATAACTTATATAACTTA
* *
7528412 TATAACATATATAACTTA
1 CATAACTTATATAACTTA
*
7528430 CATAACTTATATAACATA
1 CATAACTTATATAACTTA
7528448 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
7528466 TATAACTTAGATAA-ATA
1 CATAACTTATATAACTTA
* *
7528483 TATAACTTACATAACTTA
1 CATAACTTATATAACTTA
**
7528501 CATAATACTTAAATATATTTTATA
1 CAT-A-ACTT--ATATA-ACT-TA
* *
7528525 TCATAATTTACATAACTTA
1 -CATAACTTATATAACTTA
7528544 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
7528562 GATAA-ATATATAATTTA
1 CATAACTTATATAACTTA
* * *
7528579 CATAA-ATATATATCATA
1 CATAACTTATATAACTTA
* *
7528596 TCATAAATTACATAACTTA
1 -CATAACTTATATAACTTA
7528615 CATAA
1 CATAA
7528620 TACTTAAATA
Statistics
Matches: 164, Mismatches: 34, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
17 38 0.23
18 92 0.56
19 11 0.07
20 5 0.03
21 4 0.02
22 4 0.02
23 4 0.02
24 3 0.02
25 3 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:7528607 original size:114 final size:114
Alignment explanation
Indices: 7528422--7528643 Score: 313
Period size: 114 Copynumber: 1.9 Consensus size: 114
7528412 TATAACATAT
* * *
7528422 ATAACTTACATAACTTATATAACATACATAACTTATATAACTTATATAACTTAGATAAATATATA
1 ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATAAATATATA
* * *
7528487 ACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTAC
66 AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
* * * * *
7528536 ATAACTTACATAACTTATATAACTTAGATAA-ATATATAATTTACATAAA-TATATATCATATCA
1 ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATA-AATAT-A
7528599 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATA
64 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATA
7528644 CATAACTAGT
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
112 5 0.05
113 18 0.19
114 72 0.76
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.39
Consensus pattern (114 bp):
ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATAAATATATA
AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
Found at i:7534607 original size:31 final size:31
Alignment explanation
Indices: 7534561--7534627 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
7534551 TGGTTGTATT
* *
7534561 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
7534592 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
7534623 TTTTA
1 TTTTA
7534628 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:7534726 original size:43 final size:43
Alignment explanation
Indices: 7534704--7534878 Score: 278
Period size: 43 Copynumber: 4.0 Consensus size: 43
7534694 AAAAAAAGCA
*
7534704 CCGCTAAAAGCCTTGACGTTTAGCGGCACTTTTCCCACAAACG
1 CCGCTAAAAGCCTTGACGTTTAGCGGCGCTTTTCCCACAAACG
*
7534747 CCGCTAAAAGCCTTGACGTCTAGCGGCGCTTTTCCCACAAACG
1 CCGCTAAAAGCCTTGACGTTTAGCGGCGCTTTTCCCACAAACG
*
7534790 CCGCTAAAAGCCTTTACGTTTAGCGGCGCTTTTCCCACAAACG
1 CCGCTAAAAGCCTTGACGTTTAGCGGCGCTTTTCCCACAAACG
* ** *
7534833 CCGCTAAAAGCCTTGACCTTTAGCGGCTTTTTTTCCAACAAACG
1 CCGCTAAAAGCCTTGACGTTTAGCGGC-GCTTTTCCCACAAACG
7534877 CC
1 CC
7534879 ACAAATTTTT
Statistics
Matches: 122, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
43 107 0.88
44 15 0.12
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.25
Consensus pattern (43 bp):
CCGCTAAAAGCCTTGACGTTTAGCGGCGCTTTTCCCACAAACG
Found at i:7550525 original size:40 final size:41
Alignment explanation
Indices: 7550466--7550657 Score: 275
Period size: 40 Copynumber: 4.8 Consensus size: 41
7550456 CATTTGAATG
*
7550466 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
7550506 TTATCCGGGTTAAGACCCGAAGGCATTTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
7550546 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
7550586 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
7550626 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
7550658 TTGTGGTTAT
Statistics
Matches: 140, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
40 137 0.98
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:7562334 original size:132 final size:132
Alignment explanation
Indices: 7562092--7562354 Score: 508
Period size: 132 Copynumber: 2.0 Consensus size: 132
7562082 ATACTTTTCG
* *
7562092 AATTGTATTTTAATCAATTTATTATTTCAGGAAATCAACTCTCCGGAGCTGGGATGGGTGCAAGC
1 AATTATATTTTAATCAATTTATTATTTCAGGAAATCAACTCTCCGGAGCTGGGATGGGTGCAAAC
7562157 GTTGAGGCTGAACAATATGGAAAAGACATAGTAGTACTTAAGAATCTAGTGAAAGAATTACACCC
66 GTTGAGGCTGAACAATATGGAAAAGACATAGTAGTACTTAAGAATCTAGTGAAAGAATTACACCC
7562222 AA
131 AA
7562224 AATTATATTTTAATCAATTTATTATTTCAGGAAATCAACTCTCCGGAGCTGGGATGGGTGCAAAC
1 AATTATATTTTAATCAATTTATTATTTCAGGAAATCAACTCTCCGGAGCTGGGATGGGTGCAAAC
7562289 GTTGAGGCTGAACAATATGGAAAAGACATAGTAGTACTTAAGAATCTAGTGAAAGAATTACACCC
66 GTTGAGGCTGAACAATATGGAAAAGACATAGTAGTACTTAAGAATCTAGTGAAAGAATTACACCC
7562354 A
131 A
7562355 GATCCCAAAA
Statistics
Matches: 129, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
132 129 1.00
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (132 bp):
AATTATATTTTAATCAATTTATTATTTCAGGAAATCAACTCTCCGGAGCTGGGATGGGTGCAAAC
GTTGAGGCTGAACAATATGGAAAAGACATAGTAGTACTTAAGAATCTAGTGAAAGAATTACACCC
AA
Found at i:7563686 original size:28 final size:28
Alignment explanation
Indices: 7563632--7563686 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
7563622 ACATCATTAC
* *
7563632 TTTATCTAAAATGTAATACCTTTAAACA
1 TTTATCTAAAATGTAATACCATCAAACA
7563660 TTTATCTAAAATGTAATACCATCAAAC
1 TTTATCTAAAATGTAATACCATCAAAC
7563687 CCTGCTTGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.44, C:0.16, G:0.04, T:0.36
Consensus pattern (28 bp):
TTTATCTAAAATGTAATACCATCAAACA
Found at i:7567106 original size:5 final size:5
Alignment explanation
Indices: 7567098--7567205 Score: 57
Period size: 5 Copynumber: 21.6 Consensus size: 5
7567088 ACTATATAGA
* * * * *
7567098 ATAAT ATAAT ATCAT ATAAT ATAAT AAAAT TTAAT -TACAT ATAAT TTAAAA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA-AT ATAAT AT-AAT
* *
7567149 ATAA- ATAAT AATAGAT ATAAA ATAAT GGATAAT AT-AT A-AAT A-AAA
1 ATAAT ATAAT -ATA-AT ATAAT ATAAT --ATAAT ATAAT ATAAT ATAAT
7567194 ATAAT AT-AT ATA
1 ATAAT ATAAT ATA
7567206 TCATTTTATA
Statistics
Matches: 80, Mismatches: 12, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
4 19 0.24
5 43 0.54
6 11 0.14
7 7 0.09
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (5 bp):
ATAAT
Found at i:7567114 original size:10 final size:9
Alignment explanation
Indices: 7567077--7567205 Score: 54
Period size: 9 Copynumber: 14.3 Consensus size: 9
7567067 TAAAATATTA
*
7567077 ATAATACAT
1 ATAATATAT
*
7567086 ATACTATAT
1 ATAATATAT
*
7567095 AGAATA-AT
1 ATAATATAT
7567103 ATAATATCAT
1 ATAATAT-AT
7567113 ATAATATA-
1 ATAATATAT
7567121 ATAA-A-AT
1 ATAATATAT
* *
7567128 TTAATTACAT
1 ATAA-TATAT
*
7567138 ATAATTTA-
1 ATAATATAT
* *
7567146 AAAATAAAT
1 ATAATATAT
*
7567155 AATAATAGAT
1 -ATAATATAT
*
7567165 ATAAAATAAT
1 ATAATAT-AT
7567175 GGATAATATAT
1 --ATAATATAT
* *
7567186 A-AATAAAA
1 ATAATATAT
7567194 ATAATATAT
1 ATAATATAT
7567203 ATA
1 ATA
7567206 TCATTTTATA
Statistics
Matches: 87, Mismatches: 21, Indels: 24
0.66 0.16 0.18
Matches are distributed among these distances:
6 1 0.01
7 4 0.05
8 22 0.25
9 29 0.33
10 23 0.26
11 2 0.02
12 6 0.07
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (9 bp):
ATAATATAT
Found at i:7567171 original size:21 final size:20
Alignment explanation
Indices: 7567146--7567205 Score: 56
Period size: 19 Copynumber: 3.0 Consensus size: 20
7567136 ATATAATTTA
7567146 AAAATAAATAATAATAGATAT
1 AAAATAAATAATAATA-ATAT
*
7567167 AAAAT-AATGGATAAT-ATAT
1 AAAATAAAT-AATAATAATAT
7567186 -AAATAAA-AATAATATATAT
1 AAAATAAATAATAATA-ATAT
7567205 A
1 A
7567206 TCATTTTATA
Statistics
Matches: 32, Mismatches: 2, Indels: 11
0.71 0.04 0.24
Matches are distributed among these distances:
17 5 0.16
18 4 0.12
19 10 0.31
20 3 0.09
21 10 0.31
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (20 bp):
AAAATAAATAATAATAATAT
Found at i:7567173 original size:17 final size:17
Alignment explanation
Indices: 7566999--7567203 Score: 77
Period size: 17 Copynumber: 11.8 Consensus size: 17
7566989 TAGGAAGCAT
7566999 ATAATAATATA-ATAATA
1 ATAATAATATATA-AATA
* * *
7567016 TTAATAACA-AAAAATA
1 ATAATAATATATAAATA
* * *
7567032 ATAATACATACATACATT
1 ATAATA-ATATATAAATA
* * *
7567050 AGAA-AATATTTAATTA
1 ATAATAATATATAAATA
7567066 ATAA-AATAT-T-AATA
1 ATAATAATATATAAATA
7567080 ATACATATACTATATAGAATA
1 ATA-ATA-A-TATATA-AATA
7567101 AT-ATAATATCATATAAT-
1 ATAATAATAT-ATA-AATA
* * *
7567118 ATAATAAAATTTAATTA
1 ATAATAATATATAAATA
* *
7567135 CAT-ATAATTTAAAAATAA
1 -ATAATAATATATAAAT-A
7567153 ATAATAATAGATATAAAATA
1 ATAATAAT--ATAT-AAATA
*
7567173 ATGGATAATATATAAATA
1 AT-AATAATATATAAATA
*
7567191 AAAATAATATATA
1 ATAATAATATATA
7567204 TATCATTTTA
Statistics
Matches: 139, Mismatches: 29, Indels: 40
0.67 0.14 0.19
Matches are distributed among these distances:
14 6 0.04
15 2 0.01
16 27 0.19
17 39 0.28
18 37 0.27
19 8 0.06
20 5 0.04
21 15 0.11
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (17 bp):
ATAATAATATATAAATA
Found at i:7567194 original size:24 final size:24
Alignment explanation
Indices: 7567153--7567198 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
7567143 TTAAAAATAA
*
7567153 ATAATAATAGATATAAAATAATGG
1 ATAATAATAAATATAAAATAATGG
7567177 ATAATATATAAATA-AAAATAAT
1 ATAATA-ATAAATATAAAATAAT
7567199 ATATATATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (24 bp):
ATAATAATAAATATAAAATAATGG
Found at i:7569148 original size:206 final size:206
Alignment explanation
Indices: 7568775--7569330 Score: 790
Period size: 206 Copynumber: 2.7 Consensus size: 206
7568765 AAATCTGCTT
7568775 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * * *
7568840 GCGAAAACCAAATCAGCTATGTCTTTGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * ** * *
7568905 GGATTTGCTTCAGTCTAATCATCAGAAGGTTAGATCTGCTATGTGTCTGCCCTCTGTCGAATATG
131 GGATCTGCTTCAGTATAAACATCAGAAGGCCAGATCTGCTATGTATCTGCCCTCCGTCGAATATG
7568970 GAGACACCAAA
196 GAGACACCAAA
* * * * *
7568981 CTTCAATTTGTTCTCTGACAATACAGAGATTCCAAATGATCTTAAACTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
** * * ** *
7569046 GTGAAAGCTGAATCAGCTATGAT-TTCGATTTGTTCCTTGTAAACACAGGGATGCCAAATAATAT
66 GTGAAAGCCAAATCAGCTATG-TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
* *
7569110 TGGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATAT
130 TGGATCTGCTTCAGTATAAACATCAGAAGGCCAGATCTGCTATGTATCTGCCCTCCGTCGAATAT
* * *
7569175 GGGGACGCTAAA
195 GGAGACACCAAA
* * * *
7569187 CTTCGATTTGTCCTTTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAT
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
7569252 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
7569317 GGATCTTGCTTCAG
131 GGATC-TGCTTCAG
7569331 CCAAATCTGC
Statistics
Matches: 302, Mismatches: 45, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
205 1 0.00
206 292 0.97
207 9 0.03
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAACATCAGAAGGCCAGATCTGCTATGTATCTGCCCTCCGTCGAATATG
GAGACACCAAA
Found at i:7570494 original size:5 final size:5
Alignment explanation
Indices: 7570486--7570593 Score: 57
Period size: 5 Copynumber: 21.6 Consensus size: 5
7570476 ACTATATAGA
* * * * *
7570486 ATAAT ATAAT ATCAT ATAAT ATAAT AAAAT TTAAT -TACAT ATAAT TTAAAA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA-AT ATAAT AT-AAT
* *
7570537 ATAA- ATAAT AATAGAT ATAAA ATAAT GGATAAT AT-AT A-AAT A-AAA
1 ATAAT ATAAT -ATA-AT ATAAT ATAAT --ATAAT ATAAT ATAAT ATAAT
7570582 ATAAT AT-AT ATA
1 ATAAT ATAAT ATA
7570594 TCATTTTATA
Statistics
Matches: 80, Mismatches: 12, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
4 19 0.24
5 43 0.54
6 11 0.14
7 7 0.09
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (5 bp):
ATAAT
Found at i:7570502 original size:10 final size:9
Alignment explanation
Indices: 7570465--7570593 Score: 54
Period size: 9 Copynumber: 14.3 Consensus size: 9
7570455 TAAAATATTA
*
7570465 ATAATACAT
1 ATAATATAT
*
7570474 ATACTATAT
1 ATAATATAT
*
7570483 AGAATA-AT
1 ATAATATAT
7570491 ATAATATCAT
1 ATAATAT-AT
7570501 ATAATATA-
1 ATAATATAT
7570509 ATAA-A-AT
1 ATAATATAT
* *
7570516 TTAATTACAT
1 ATAA-TATAT
*
7570526 ATAATTTA-
1 ATAATATAT
* *
7570534 AAAATAAAT
1 ATAATATAT
*
7570543 AATAATAGAT
1 -ATAATATAT
*
7570553 ATAAAATAAT
1 ATAATAT-AT
7570563 GGATAATATAT
1 --ATAATATAT
* *
7570574 A-AATAAAA
1 ATAATATAT
7570582 ATAATATAT
1 ATAATATAT
7570591 ATA
1 ATA
7570594 TCATTTTATA
Statistics
Matches: 87, Mismatches: 21, Indels: 24
0.66 0.16 0.18
Matches are distributed among these distances:
6 1 0.01
7 4 0.05
8 22 0.25
9 29 0.33
10 23 0.26
11 2 0.02
12 6 0.07
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (9 bp):
ATAATATAT
Found at i:7570559 original size:21 final size:20
Alignment explanation
Indices: 7570534--7570593 Score: 56
Period size: 19 Copynumber: 3.0 Consensus size: 20
7570524 ATATAATTTA
7570534 AAAATAAATAATAATAGATAT
1 AAAATAAATAATAATA-ATAT
*
7570555 AAAAT-AATGGATAAT-ATAT
1 AAAATAAAT-AATAATAATAT
7570574 -AAATAAA-AATAATATATAT
1 AAAATAAATAATAATA-ATAT
7570593 A
1 A
7570594 TCATTTTATA
Statistics
Matches: 32, Mismatches: 2, Indels: 11
0.71 0.04 0.24
Matches are distributed among these distances:
17 5 0.16
18 4 0.12
19 10 0.31
20 3 0.09
21 10 0.31
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (20 bp):
AAAATAAATAATAATAATAT
Found at i:7570561 original size:17 final size:17
Alignment explanation
Indices: 7570387--7570591 Score: 77
Period size: 17 Copynumber: 11.8 Consensus size: 17
7570377 TAGGAAGCAT
7570387 ATAATAATATA-ATAATA
1 ATAATAATATATA-AATA
* * *
7570404 TTAATAACA-AAAAATA
1 ATAATAATATATAAATA
* * *
7570420 ATAATACATACATACATT
1 ATAATA-ATATATAAATA
* * *
7570438 AGAA-AATATTTAATTA
1 ATAATAATATATAAATA
7570454 ATAA-AATAT-T-AATA
1 ATAATAATATATAAATA
7570468 ATACATATACTATATAGAATA
1 ATA-ATA-A-TATATA-AATA
7570489 AT-ATAATATCATATAAT-
1 ATAATAATAT-ATA-AATA
* * *
7570506 ATAATAAAATTTAATTA
1 ATAATAATATATAAATA
* *
7570523 CAT-ATAATTTAAAAATAA
1 -ATAATAATATATAAAT-A
7570541 ATAATAATAGATATAAAATA
1 ATAATAAT--ATAT-AAATA
*
7570561 ATGGATAATATATAAATA
1 AT-AATAATATATAAATA
*
7570579 AAAATAATATATA
1 ATAATAATATATA
7570592 TATCATTTTA
Statistics
Matches: 139, Mismatches: 29, Indels: 40
0.67 0.14 0.19
Matches are distributed among these distances:
14 6 0.04
15 2 0.01
16 27 0.19
17 39 0.28
18 37 0.27
19 8 0.06
20 5 0.04
21 15 0.11
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (17 bp):
ATAATAATATATAAATA
Found at i:7570582 original size:24 final size:24
Alignment explanation
Indices: 7570541--7570586 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
7570531 TTAAAAATAA
*
7570541 ATAATAATAGATATAAAATAATGG
1 ATAATAATAAATATAAAATAATGG
7570565 ATAATATATAAATA-AAAATAAT
1 ATAATA-ATAAATATAAAATAAT
7570587 ATATATATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (24 bp):
ATAATAATAAATATAAAATAATGG
Found at i:7572536 original size:206 final size:206
Alignment explanation
Indices: 7572163--7572677 Score: 717
Period size: 206 Copynumber: 2.5 Consensus size: 206
7572153 AAATCTGCTT
7572163 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * * * * *
7572228 GCGAAAACCAAATCAGCTATGTCTTTGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATACCAAACAATATT
* * * ** * *
7572293 GGATTTGCTTCAGTCTAATCATCAGAAGGTTAGATCTGCTATGTGTCTGCCCTCTGTCGAATATG
131 GGATCTGCTTCAGTATAAACATCAGAAGGCCAGATCTGCTATGTATCTGCCCTCCGTCGAATATG
7572358 GAGACACCAAA
196 GAGACACCAAA
* * * * *
7572369 CTTCAATTTGTTCTCTGACAATACAGAGATTCCAAATGATCTTAAACTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
** * * *
7572434 GTGAAAGCTGAATCAGCTATGAT-TTCGATTTGTTCCTTGTAAACACAGGGATGCCAAATAATAT
66 GTGAAAGCCAAATCAGCTATG-TCTTCGATTTGTTCCTTGTAAACACAAGGATACCAAACAATAT
* *
7572498 TGGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATAT
130 TGGATCTGCTTCAGTATAAACATCAGAAGGCCAGATCTGCTATGTATCTGCCCTCCGTCGAATAT
* * *
7572563 GGGGACGCTAAA
195 GGAGACACCAAA
* * *
7572575 CTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAT
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
*
7572640 GTGAAAGCCAAATCAGCTATGTCTTCAATTTGTTCCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTT
7572678 TGGATCTGCT
Statistics
Matches: 267, Mismatches: 40, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
205 1 0.00
206 265 0.99
207 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATACCAAACAATATT
GGATCTGCTTCAGTATAAACATCAGAAGGCCAGATCTGCTATGTATCTGCCCTCCGTCGAATATG
GAGACACCAAA
Found at i:7572799 original size:180 final size:180
Alignment explanation
Indices: 7572497--7572844 Score: 597
Period size: 180 Copynumber: 1.9 Consensus size: 180
7572487 CCAAATAATA
*
7572497 TTGGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATA
1 TTGGATCTGCTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATA
* * * *
7572562 TGGGGACGCTAAACTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTAGATTTGCT
66 TGGAGACACCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCT
* * * *
7572627 TCATCGTAAGCATGTGAAAGCCAAATCAGCTATGTCTTCAATTTGTTCCT
131 TCAGCGTAAGCACGCGAAAACCAAATCAGCTATGTCTTCAATTTGTTCCT
* *
7572677 TTGGATCTGCTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCTCTCTGTCGAATA
1 TTGGATCTGCTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATA
7572742 TGGAGACACCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCT
66 TGGAGACACCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCT
7572807 TCAGCGTAAGCACGCGAAAACCAAATCAGCTATGTCTT
131 TCAGCGTAAGCACGCGAAAACCAAATCAGCTATGTCTT
7572845 TGATTTGCTC
Statistics
Matches: 157, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
180 157 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (180 bp):
TTGGATCTGCTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATA
TGGAGACACCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCT
TCAGCGTAAGCACGCGAAAACCAAATCAGCTATGTCTTCAATTTGTTCCT
Found at i:7573014 original size:386 final size:386
Alignment explanation
Indices: 7572291--7573310 Score: 1139
Period size: 386 Copynumber: 2.6 Consensus size: 386
7572281 CCAAACCATC
* * * **
7572291 TTGGATTTGCTTCAGTCTAATCATCAGAAGGTTAGATCTGCTATGTGTCTGCCCTCTGTCGAATA
1 TTGGATCTGCTTCAGTATAAACATCAGAAGGCCAGATCTGCTATGTGTCTGCCCTCTGTCGAATA
* *
7572356 TGGAGACACCAAACTTCAATTTGTTCTCTGACAATACAGAGATTCCAAATGATCTTAAACTTGCT
66 TGGAGACACCAAACTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAAACTTGCT
* * ** * *
7572421 TCAGCGTAAGCACGTGAAAGCTGAATCAGCTATGATTTCGATTTGTTCCTTGTAAACACAGGGAT
131 TCAGCGTAAGCACGCGAAAACCAAATCAGCTATGATTTCGATTTGCTCCTTGTAAACACAAGGAT
* * * *
7572486 GCCAAATAATATTGGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTC
196 ACCAAACAATATTGGATCTGCTTCAGTATAAACATCAGAAGGCCAGATCTGCTATGTATCTGCCC
* * * * *
7572551 TCCGTCGAATATGGGGACGCTAAACTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCATC
261 TCCGTCGAATATGGAGACACCAAACTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATC
* * * *
7572616 TTAGATTTGCTTCATCGTAAGCATGTGAAAGCCAAATCAGCTATG-TCTTCAATTTGTTCCT
326 TTAAACTTGCTTCAGCGTAAGCACGTGAAAGCCAAATCAGCTATGAT-TTCAATTTGTTCCT
*
7572677 TTGGATCTGCTTCAGTATAAACAT-ATGAAGGCCAGATCTGCTATGTGTCTGCTCTCTGTCGAAT
1 TTGGATCTGCTTCAGTATAAACATCA-GAAGGCCAGATCTGCTATGTGTCTGCCCTCTGTCGAAT
* * *
7572741 ATGGAGACACCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGC
65 ATGGAGACACCAAACTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAAACTTGC
* *
7572806 TTCAGCGTAAGCACGCGAAAACCAAATCAGCTATG-TCTTTGATTTGCTCCTTGTAAGCACAAGG
130 TTCAGCGTAAGCACGCGAAAACCAAATCAGCTATGAT-TTCGATTTGCTCCTTGTAAACACAAGG
* * * * * ** *
7572870 ATACCAAACCATCTTGGATTTGCTTCAGTCTAATCATCAGAAGGTTAGATCTGCTATGTGTCTGC
194 ATACCAAACAATATTGGATCTGCTTCAGTATAAACATCAGAAGGCCAGATCTGCTATGTATCTGC
* * *
7572935 CCTCTGTCGAATATGGAGACACCAAACTTCAATTTGTTCTCTGACAATACAGAGATTCCAAATGA
259 CCTCCGTCGAATATGGAGACACCAAACTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCA
** *
7573000 TCTTAAACTTGCTTCAGCGTAAGCACGTGAAAGCTGAATCAGCTATGATTTCGATTTGTTCCTTG
324 TCTTAAACTTGCTTCAGCGTAAGCACGTGAAAGCCAAATCAGCTATGATTTC-A----AT--TTG
7573065 TAAACACAGGGATGCCAAATAAT
382 T-----------T-CC------T
* * * *
7573088 ATTGGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAT
1 -TTGGATCTGCTTCAGTATAAACATCAGAAGGCCAGATCTGCTATGTGTCTGCCCTCTGTCGAAT
* * * * * * *
7573153 ATGGGGACGCTAAACTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTAGATTTGC
65 ATGGAGACACCAAACTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAAACTTGC
* * * * * *
7573218 TTCATCGTAAGCATGTGAAAGCCAAATCAGCTATG-TCTTCGATTTGTTCCTTGTAAGCACAAGG
130 TTCAGCGTAAGCACGCGAAAACCAAATCAGCTATGAT-TTCGATTTGCTCCTTGTAAACACAAGG
* * *
7573282 ATGCCAAACCATCTTGGATCTTGCTTCAG
194 ATACCAAACAATATTGGATC-TGCTTCAG
7573311 CCAAATCTGC
Statistics
Matches: 542, Mismatches: 61, Indels: 35
0.85 0.10 0.05
Matches are distributed among these distances:
385 2 0.00
386 324 0.60
387 2 0.00
391 1 0.00
393 4 0.01
404 1 0.00
405 2 0.00
411 1 0.00
412 197 0.36
413 8 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (386 bp):
TTGGATCTGCTTCAGTATAAACATCAGAAGGCCAGATCTGCTATGTGTCTGCCCTCTGTCGAATA
TGGAGACACCAAACTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAAACTTGCT
TCAGCGTAAGCACGCGAAAACCAAATCAGCTATGATTTCGATTTGCTCCTTGTAAACACAAGGAT
ACCAAACAATATTGGATCTGCTTCAGTATAAACATCAGAAGGCCAGATCTGCTATGTATCTGCCC
TCCGTCGAATATGGAGACACCAAACTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATC
TTAAACTTGCTTCAGCGTAAGCACGTGAAAGCCAAATCAGCTATGATTTCAATTTGTTCCT
Found at i:7573042 original size:206 final size:206
Alignment explanation
Indices: 7572677--7573310 Score: 939
Period size: 206 Copynumber: 3.1 Consensus size: 206
7572667 ATTTGTTCCT
7572677 TTGGATCTGCTTCAGTATAAACAT-ATGAAGGCCAGATCTGCTATGTGTCTGCTCTCTGTCGAAT
1 TTGGATCTGCTTCAGTATAAACATCA-GAAGGCCAGATCTGCTATGTGTCTGCTCTCTGTCGAAT
7572741 ATGGAGACACCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGC
65 ATGGAGACACCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGC
* * * *
7572806 TTCAGCGTAAGCACGCGAAAACCAAATCAGCTATGTCTTTGATTTGCTCCTTGTAAGCACAAGGA
130 TTCAGCGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGA
*
7572871 TACCAAACCATC
195 TGCCAAACCATC
* * * ** *
7572883 TTGGATTTGCTTCAGTCTAATCATCAGAAGGTTAGATCTGCTATGTGTCTGCCCTCTGTCGAATA
1 TTGGATCTGCTTCAGTATAAACATCAGAAGGCCAGATCTGCTATGTGTCTGCTCTCTGTCGAATA
* * * * *
7572948 TGGAGACACCAAACTTCAATTTGTTCTCTGACAATACAGAGATTCCAAATGATCTTAAACTTGCT
66 TGGAGACACCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCT
** * *
7573013 TCAGCGTAAGCACGTGAAAGCTGAATCAGCTATGAT-TTCGATTTGTTCCTTGTAAACACAGGGA
131 TCAGCGTAAGCACGTGAAAGCCAAATCAGCTATG-TCTTCGATTTGTTCCTTGTAAGCACAAGGA
** *
7573077 TGCCAAATAATA
195 TGCCAAACCATC
* * *
7573089 TTGGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATA
1 TTGGATCTGCTTCAGTATAAACATCAGAAGGCCAGATCTGCTATGTGTCTGCTCTCTGTCGAATA
* * * *
7573154 TGGGGACGCTAAACTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTAGATTTGCT
66 TGGAGACACCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCT
* *
7573219 TCATCGTAAGCATGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGAT
131 TCAGCGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGAT
7573284 GCCAAACCATC
196 GCCAAACCATC
7573295 TTGGATCTTGCTTCAG
1 TTGGATC-TGCTTCAG
7573311 CCAAATCTGC
Statistics
Matches: 374, Mismatches: 50, Indels: 7
0.87 0.12 0.02
Matches are distributed among these distances:
205 1 0.00
206 363 0.97
207 10 0.03
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (206 bp):
TTGGATCTGCTTCAGTATAAACATCAGAAGGCCAGATCTGCTATGTGTCTGCTCTCTGTCGAATA
TGGAGACACCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCT
TCAGCGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGAT
GCCAAACCATC
Found at i:7585786 original size:5 final size:5
Alignment explanation
Indices: 7585778--7585885 Score: 57
Period size: 5 Copynumber: 21.6 Consensus size: 5
7585768 ACTATATAGA
* * * * *
7585778 ATAAT ATAAT ATCAT ATAAT ATAAT AAAAT TTAAT -TACAT ATAAT TTAAAA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA-AT ATAAT AT-AAT
* *
7585829 ATAA- ATAAT AATAGAT ATAAA ATAAT GGATAAT AT-AT A-AAT A-AAA
1 ATAAT ATAAT -ATA-AT ATAAT ATAAT --ATAAT ATAAT ATAAT ATAAT
7585874 ATAAT AT-AT ATA
1 ATAAT ATAAT ATA
7585886 TCATTTTATA
Statistics
Matches: 80, Mismatches: 12, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
4 19 0.24
5 43 0.54
6 11 0.14
7 7 0.09
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (5 bp):
ATAAT
Found at i:7585794 original size:10 final size:9
Alignment explanation
Indices: 7585757--7585885 Score: 54
Period size: 9 Copynumber: 14.3 Consensus size: 9
7585747 TAAAATATTA
*
7585757 ATAATACAT
1 ATAATATAT
*
7585766 ATACTATAT
1 ATAATATAT
*
7585775 AGAATA-AT
1 ATAATATAT
7585783 ATAATATCAT
1 ATAATAT-AT
7585793 ATAATATA-
1 ATAATATAT
7585801 ATAA-A-AT
1 ATAATATAT
* *
7585808 TTAATTACAT
1 ATAA-TATAT
*
7585818 ATAATTTA-
1 ATAATATAT
* *
7585826 AAAATAAAT
1 ATAATATAT
*
7585835 AATAATAGAT
1 -ATAATATAT
*
7585845 ATAAAATAAT
1 ATAATAT-AT
7585855 GGATAATATAT
1 --ATAATATAT
* *
7585866 A-AATAAAA
1 ATAATATAT
7585874 ATAATATAT
1 ATAATATAT
7585883 ATA
1 ATA
7585886 TCATTTTATA
Statistics
Matches: 87, Mismatches: 21, Indels: 24
0.66 0.16 0.18
Matches are distributed among these distances:
6 1 0.01
7 4 0.05
8 22 0.25
9 29 0.33
10 23 0.26
11 2 0.02
12 6 0.07
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (9 bp):
ATAATATAT
Found at i:7585851 original size:21 final size:20
Alignment explanation
Indices: 7585826--7585885 Score: 56
Period size: 19 Copynumber: 3.0 Consensus size: 20
7585816 ATATAATTTA
7585826 AAAATAAATAATAATAGATAT
1 AAAATAAATAATAATA-ATAT
*
7585847 AAAAT-AATGGATAAT-ATAT
1 AAAATAAAT-AATAATAATAT
7585866 -AAATAAA-AATAATATATAT
1 AAAATAAATAATAATA-ATAT
7585885 A
1 A
7585886 TCATTTTATA
Statistics
Matches: 32, Mismatches: 2, Indels: 11
0.71 0.04 0.24
Matches are distributed among these distances:
17 5 0.16
18 4 0.12
19 10 0.31
20 3 0.09
21 10 0.31
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (20 bp):
AAAATAAATAATAATAATAT
Found at i:7585853 original size:17 final size:17
Alignment explanation
Indices: 7585679--7585883 Score: 77
Period size: 17 Copynumber: 11.8 Consensus size: 17
7585669 TAGGAAGCAT
7585679 ATAATAATATA-ATAATA
1 ATAATAATATATA-AATA
* * *
7585696 TTAATAACA-AAAAATA
1 ATAATAATATATAAATA
* * *
7585712 ATAATACATACATACATT
1 ATAATA-ATATATAAATA
* * *
7585730 AGAA-AATATTTAATTA
1 ATAATAATATATAAATA
7585746 ATAA-AATAT-T-AATA
1 ATAATAATATATAAATA
7585760 ATACATATACTATATAGAATA
1 ATA-ATA-A-TATATA-AATA
7585781 AT-ATAATATCATATAAT-
1 ATAATAATAT-ATA-AATA
* * *
7585798 ATAATAAAATTTAATTA
1 ATAATAATATATAAATA
* *
7585815 CAT-ATAATTTAAAAATAA
1 -ATAATAATATATAAAT-A
7585833 ATAATAATAGATATAAAATA
1 ATAATAAT--ATAT-AAATA
*
7585853 ATGGATAATATATAAATA
1 AT-AATAATATATAAATA
*
7585871 AAAATAATATATA
1 ATAATAATATATA
7585884 TATCATTTTA
Statistics
Matches: 139, Mismatches: 29, Indels: 40
0.67 0.14 0.19
Matches are distributed among these distances:
14 6 0.04
15 2 0.01
16 27 0.19
17 39 0.28
18 37 0.27
19 8 0.06
20 5 0.04
21 15 0.11
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (17 bp):
ATAATAATATATAAATA
Found at i:7585874 original size:24 final size:24
Alignment explanation
Indices: 7585833--7585878 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
7585823 TTAAAAATAA
*
7585833 ATAATAATAGATATAAAATAATGG
1 ATAATAATAAATATAAAATAATGG
7585857 ATAATATATAAATA-AAAATAAT
1 ATAATA-ATAAATATAAAATAAT
7585879 ATATATATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (24 bp):
ATAATAATAAATATAAAATAATGG
Found at i:7587828 original size:206 final size:206
Alignment explanation
Indices: 7587455--7588010 Score: 799
Period size: 206 Copynumber: 2.7 Consensus size: 206
7587445 AAATCTGCTT
7587455 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * * *
7587520 GCGAAAACCAAATCAGCTATGTCTTTGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * ** * *
7587585 GGATTTGCTTCAGTCTAATCATCAGAAGGTTAGATCTGCTATGTGTCTGCCCTCTGTCGAATATG
131 GGATCTGCTTCAGTATAAACATCAGAAGGCCAGATCTGCTATGTATCTGCCCTCCGTCGAATATG
7587650 GAGACACCAAA
196 GAGACACCAAA
* * * * *
7587661 CTTCAATTTGTTCTCTGACAATACAGAGATTCCAAATGATCTTAAACTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
** * * ** *
7587726 GTGAAAGCTGAATCAGCTATGAT-TTCGATTTGTTCCTTGTAAACACAGGGATGCCAAATAATAT
66 GTGAAAGCCAAATCAGCTATG-TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
* *
7587790 TGGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATAT
130 TGGATCTGCTTCAGTATAAACATCAGAAGGCCAGATCTGCTATGTATCTGCCCTCCGTCGAATAT
* * *
7587855 GGGGACGCTAAA
195 GGAGACACCAAA
* * *
7587867 CTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAT
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
7587932 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
7587997 GGATCTTGCTTCAG
131 GGATC-TGCTTCAG
7588011 CCAAATCTGC
Statistics
Matches: 303, Mismatches: 44, Indels: 5
0.86 0.12 0.01
Matches are distributed among these distances:
205 1 0.00
206 293 0.97
207 9 0.03
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAACATCAGAAGGCCAGATCTGCTATGTATCTGCCCTCCGTCGAATATG
GAGACACCAAA
Found at i:7588836 original size:5 final size:5
Alignment explanation
Indices: 7588828--7588935 Score: 57
Period size: 5 Copynumber: 21.6 Consensus size: 5
7588818 ACTATATAGA
* * * * *
7588828 ATAAT ATAAT ATCAT ATAAT ATAAT AAAAT TTAAT -TACAT ATAAT TTAAAA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA-AT ATAAT AT-AAT
* *
7588879 ATAA- ATAAT AATAGAT ATAAA ATAAT GGATAAT AT-AT A-AAT A-AAA
1 ATAAT ATAAT -ATA-AT ATAAT ATAAT --ATAAT ATAAT ATAAT ATAAT
7588924 ATAAT AT-AT ATA
1 ATAAT ATAAT ATA
7588936 TCATTTTATA
Statistics
Matches: 80, Mismatches: 12, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
4 19 0.24
5 43 0.54
6 11 0.14
7 7 0.09
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (5 bp):
ATAAT
Found at i:7588844 original size:10 final size:9
Alignment explanation
Indices: 7588807--7588935 Score: 54
Period size: 9 Copynumber: 14.3 Consensus size: 9
7588797 TAAAATATTA
*
7588807 ATAATACAT
1 ATAATATAT
*
7588816 ATACTATAT
1 ATAATATAT
*
7588825 AGAATA-AT
1 ATAATATAT
7588833 ATAATATCAT
1 ATAATAT-AT
7588843 ATAATATA-
1 ATAATATAT
7588851 ATAA-A-AT
1 ATAATATAT
* *
7588858 TTAATTACAT
1 ATAA-TATAT
*
7588868 ATAATTTA-
1 ATAATATAT
* *
7588876 AAAATAAAT
1 ATAATATAT
*
7588885 AATAATAGAT
1 -ATAATATAT
*
7588895 ATAAAATAAT
1 ATAATAT-AT
7588905 GGATAATATAT
1 --ATAATATAT
* *
7588916 A-AATAAAA
1 ATAATATAT
7588924 ATAATATAT
1 ATAATATAT
7588933 ATA
1 ATA
7588936 TCATTTTATA
Statistics
Matches: 87, Mismatches: 21, Indels: 24
0.66 0.16 0.18
Matches are distributed among these distances:
6 1 0.01
7 4 0.05
8 22 0.25
9 29 0.33
10 23 0.26
11 2 0.02
12 6 0.07
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (9 bp):
ATAATATAT
Found at i:7588901 original size:21 final size:20
Alignment explanation
Indices: 7588876--7588935 Score: 56
Period size: 19 Copynumber: 3.0 Consensus size: 20
7588866 ATATAATTTA
7588876 AAAATAAATAATAATAGATAT
1 AAAATAAATAATAATA-ATAT
*
7588897 AAAAT-AATGGATAAT-ATAT
1 AAAATAAAT-AATAATAATAT
7588916 -AAATAAA-AATAATATATAT
1 AAAATAAATAATAATA-ATAT
7588935 A
1 A
7588936 TCATTTTATA
Statistics
Matches: 32, Mismatches: 2, Indels: 11
0.71 0.04 0.24
Matches are distributed among these distances:
17 5 0.16
18 4 0.12
19 10 0.31
20 3 0.09
21 10 0.31
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (20 bp):
AAAATAAATAATAATAATAT
Found at i:7588903 original size:17 final size:17
Alignment explanation
Indices: 7588729--7588933 Score: 77
Period size: 17 Copynumber: 11.8 Consensus size: 17
7588719 TAGGAAGCAT
7588729 ATAATAATATA-ATAATA
1 ATAATAATATATA-AATA
* * *
7588746 TTAATAACA-AAAAATA
1 ATAATAATATATAAATA
* * *
7588762 ATAATACATACATACATT
1 ATAATA-ATATATAAATA
* * *
7588780 AGAA-AATATTTAATTA
1 ATAATAATATATAAATA
7588796 ATAA-AATAT-T-AATA
1 ATAATAATATATAAATA
7588810 ATACATATACTATATAGAATA
1 ATA-ATA-A-TATATA-AATA
7588831 AT-ATAATATCATATAAT-
1 ATAATAATAT-ATA-AATA
* * *
7588848 ATAATAAAATTTAATTA
1 ATAATAATATATAAATA
* *
7588865 CAT-ATAATTTAAAAATAA
1 -ATAATAATATATAAAT-A
7588883 ATAATAATAGATATAAAATA
1 ATAATAAT--ATAT-AAATA
*
7588903 ATGGATAATATATAAATA
1 AT-AATAATATATAAATA
*
7588921 AAAATAATATATA
1 ATAATAATATATA
7588934 TATCATTTTA
Statistics
Matches: 139, Mismatches: 29, Indels: 40
0.67 0.14 0.19
Matches are distributed among these distances:
14 6 0.04
15 2 0.01
16 27 0.19
17 39 0.28
18 37 0.27
19 8 0.06
20 5 0.04
21 15 0.11
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (17 bp):
ATAATAATATATAAATA
Found at i:7588924 original size:24 final size:24
Alignment explanation
Indices: 7588883--7588928 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
7588873 TTAAAAATAA
*
7588883 ATAATAATAGATATAAAATAATGG
1 ATAATAATAAATATAAAATAATGG
7588907 ATAATATATAAATA-AAAATAAT
1 ATAATA-ATAAATATAAAATAAT
7588929 ATATATATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (24 bp):
ATAATAATAAATATAAAATAATGG
Done.