Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56482370
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1659275 characters in sequence are not A, C, G, or T
File 24 of 172
Found at i:7600220 original size:5 final size:5
Alignment explanation
Indices: 7600210--7600251 Score: 59
Period size: 5 Copynumber: 8.6 Consensus size: 5
7600200 CAATTTGTGA
* *
7600210 AAAAT AAAAT ATAAT AAAAT ATAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
7600252 GAACACACAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
4 4 0.12
5 28 0.88
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (5 bp):
AAAAT
Found at i:7600227 original size:10 final size:10
Alignment explanation
Indices: 7600212--7600249 Score: 69
Period size: 10 Copynumber: 3.9 Consensus size: 10
7600202 ATTTGTGAAA
7600212 AATAAAATAT
1 AATAAAATAT
7600222 AATAAAATAT
1 AATAAAATAT
7600232 AATAAAATA-
1 AATAAAATAT
7600241 AATAAAATA
1 AATAAAATA
7600250 AAGAACACAC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
9 9 0.32
10 19 0.68
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (10 bp):
AATAAAATAT
Found at i:7601207 original size:15 final size:15
Alignment explanation
Indices: 7601187--7601218 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7601177 ATAGGTGCAA
*
7601187 ATGTGAAAGAAATAC
1 ATGTGAAAAAAATAC
7601202 ATGTGAAAAAAATAC
1 ATGTGAAAAAAATAC
7601217 AT
1 AT
7601219 CTACACAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.16, T:0.22
Consensus pattern (15 bp):
ATGTGAAAAAAATAC
Found at i:7604348 original size:32 final size:32
Alignment explanation
Indices: 7604312--7604376 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
7604302 TGTATGCATT
*
7604312 TTAGCTTTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
7604344 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
7604376 T
1 T
7604377 GGTAAGAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.29, C:0.06, G:0.25, T:0.40
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:7605884 original size:26 final size:26
Alignment explanation
Indices: 7605855--7605907 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
7605845 TTTACAGTTT
7605855 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
7605881 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
7605907 T
1 T
7605908 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:7614206 original size:22 final size:21
Alignment explanation
Indices: 7614171--7614246 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
7614161 AAAAGGTATC
* *
7614171 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
7614192 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
7614215 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
7614234 TGC-AATCATATCT
1 TACAAATCATATCT
7614247 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:7614263 original size:35 final size:37
Alignment explanation
Indices: 7614200--7614297 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
7614190 ATTACAAAAT
7614200 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
7614236 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
7614271 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
7614298 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:7614305 original size:17 final size:19
Alignment explanation
Indices: 7614207--7614297 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
7614197 AATCATATCT
7614207 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
7614226 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
7614244 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
7614261 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
7614280 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
7614298 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:7614717 original size:45 final size:45
Alignment explanation
Indices: 7614649--7614832 Score: 165
Period size: 45 Copynumber: 4.0 Consensus size: 45
7614639 GGAAGATGAT
* * * *
7614649 ATCTGCTATCTTTGATCTTCTCCCCATCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAA
* *
7614694 ATCTGTTATATTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAA
* * * * * * * * * *
7614739 ATCTGTCATCTTGGATCTACT-TCGATGTAA-ACACATGAAGGTCAG
1 ATCTGTTATCTTCGATCTGCTCCCCATCTAATACAGA-G-ATGCCAA
*
7614784 ATCTGCTATGTCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAA
7614831 AT
1 AT
7614833 TATCTTGGAT
Statistics
Matches: 104, Mismatches: 29, Indels: 10
0.73 0.20 0.07
Matches are distributed among these distances:
43 4 0.04
44 6 0.06
45 65 0.62
46 1 0.01
47 17 0.16
48 7 0.07
49 4 0.04
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAA
Found at i:7615009 original size:78 final size:78
Alignment explanation
Indices: 7614773--7615064 Score: 417
Period size: 78 Copynumber: 3.8 Consensus size: 78
7614763 ATGTAAACAC
* *
7614773 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAAATTATCT
1 ATGAAGGTCAAATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATTATCT
7614838 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * * *
7614851 ATGAA-GTCCAATCTGTTATGTCTTTGATCTGCCCCCCGTCTAATACAGA-ATGCCAAATCATCT
1 ATGAAGGTCAAATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATTATCT
7614914 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * *
7614927 ATGAAGGTTAAATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATTATCT
1 ATGAAGGTCAAATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATTATCT
7614992 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * * ** *
7615005 ATGAAGGTCAGATCTGCTATGTCTTCGATCAGCTCTCCGTCGAATATGGAGATGCTAAAT
1 ATGAAGGTCAAATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAAT
7615065 CTGTTTCTTC
Statistics
Matches: 189, Mismatches: 23, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
76 31 0.16
77 75 0.40
78 83 0.44
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAAATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATTATCT
TGGATCTGCTTCA
Found at i:7615132 original size:44 final size:44
Alignment explanation
Indices: 7615053--7615328 Score: 306
Period size: 44 Copynumber: 6.3 Consensus size: 44
7615043 GTCGAATATG
* * * * * *
7615053 GAGATGCTAAATCTG-TTTCTTCGATTTGTTCTCTGACAGTACA
1 GAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGACAATACA
*
7615096 GAGATGCCAAATTTGCTATCTTTGATCTGCTCTCTGACAATACA
1 GAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGACAATACA
** *
7615140 GAGACACCAAATCTACTATCTTTGATCTGCTCTCTGACAATACA
1 GAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGACAATACA
* * *
7615184 GAGATGCCAAATC-GACTATCTTCGATCAGCTCTCTAACAATACA
1 GAGATGCCAAATCTG-CTATCTTTGATCTGCTCTCTGACAATACA
* * * *
7615228 GAGACGCCAAATCTGCTATCTTCGATCTGCTCCCTGTCTAATACA
1 GAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGAC-AATACA
* * * * **
7615273 GAAATGTCAAATCTG-TTTCTTTGATTTATTCTCTGACAATACA
1 GAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGACAATACA
7615316 GAGATGCCAAATC
1 GAGATGCCAAATC
7615329 ATCTTGGATC
Statistics
Matches: 195, Mismatches: 34, Indels: 8
0.82 0.14 0.03
Matches are distributed among these distances:
43 30 0.15
44 146 0.75
45 19 0.10
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (44 bp):
GAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGACAATACA
Found at i:7623791 original size:17 final size:18
Alignment explanation
Indices: 7623759--7623794 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
7623749 GATATGATAC
*
7623759 TAAAATTTAGTAAAAAAT
1 TAAAATATAGTAAAAAAT
7623777 TAAAATATA-TAAAAAAT
1 TAAAATATAGTAAAAAAT
7623794 T
1 T
7623795 CGGGAAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (18 bp):
TAAAATATAGTAAAAAAT
Found at i:7624082 original size:22 final size:21
Alignment explanation
Indices: 7624047--7624122 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
7624037 AAAAGGTATC
* *
7624047 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
7624068 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
7624091 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
7624110 TGC-AATCATATCT
1 TACAAATCATATCT
7624123 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:7624107 original size:19 final size:19
Alignment explanation
Indices: 7624083--7624173 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
7624073 AATCATATCT
7624083 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
7624102 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
7624120 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
7624137 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
7624156 TCTAAGCTTGCATATCAT
1 TCTAAGATTGCATATCAT
7624174 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 36 0.53
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:7624139 original size:35 final size:37
Alignment explanation
Indices: 7624076--7624173 Score: 141
Period size: 35 Copynumber: 2.7 Consensus size: 37
7624066 ATTACAAAAT
7624076 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
7624112 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
*
7624147 CATATCATATCTAAGCTTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
7624174 TGAAGATTAT
Statistics
Matches: 56, Mismatches: 1, Indels: 8
0.86 0.02 0.12
Matches are distributed among these distances:
35 22 0.39
36 18 0.32
37 10 0.18
38 6 0.11
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:7624152 original size:14 final size:15
Alignment explanation
Indices: 7624097--7624152 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
7624087 AGATTGCATA
7624097 TCATATCTAAGATTG
1 TCATATCTAAGATTG
7624112 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
7624130 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
7624147 -CATATC
1 TCATATC
7624153 ATATCTAAGC
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:7624329 original size:21 final size:20
Alignment explanation
Indices: 7624292--7624330 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
7624282 TTGGACTTCG
**
7624292 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
7624312 TTTTGTTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
7624331 TCTGGGCCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:7633678 original size:24 final size:24
Alignment explanation
Indices: 7633631--7633679 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
7633621 GGCGCGTTCC
* *
7633631 AATTAGGCCTAAAATCTTTTTTTT
1 AATTAGCCCTAAAATCTTTGTTTT
7633655 AATTAGCCCTAAAA-CTTTAGTTTT
1 AATTAGCCCTAAAATCTTT-GTTTT
7633679 A
1 A
7633680 TTTCATTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.33, C:0.14, G:0.08, T:0.45
Consensus pattern (24 bp):
AATTAGCCCTAAAATCTTTGTTTT
Found at i:7633805 original size:12 final size:12
Alignment explanation
Indices: 7633763--7633807 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
7633753 TAAAATAGTA
7633763 TATATTATT-TT
1 TATATTATTATT
7633774 TATA-TATTATT
1 TATATTATTATT
*
7633785 CAT-TATATTATT
1 TATAT-TATTATT
7633797 TATATTATTAT
1 TATATTATTAT
7633808 ACATTTTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
10 4 0.14
11 8 0.29
12 15 0.54
13 1 0.04
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (12 bp):
TATATTATTATT
Found at i:7633840 original size:18 final size:19
Alignment explanation
Indices: 7633817--7633854 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
7633807 TACATTTTAT
*
7633817 TTATAAA-TTTAGTATATA
1 TTATAAATTTTACTATATA
7633835 TTATAAATTTTACTATATA
1 TTATAAATTTTACTATATA
7633854 T
1 T
7633855 ATTATTCCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (19 bp):
TTATAAATTTTACTATATA
Found at i:7634091 original size:24 final size:24
Alignment explanation
Indices: 7634044--7634092 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
7634034 GGCGCGTTCC
* *
7634044 AATTAGGCCTAAAATCTTTTTTTT
1 AATTAGCCCTAAAATCTTTGTTTT
7634068 AATTAGCCCTAAAA-CTTTAGTTTT
1 AATTAGCCCTAAAATCTTT-GTTTT
7634092 A
1 A
7634093 TTTCATTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.33, C:0.14, G:0.08, T:0.45
Consensus pattern (24 bp):
AATTAGCCCTAAAATCTTTGTTTT
Found at i:7634190 original size:13 final size:13
Alignment explanation
Indices: 7634174--7634224 Score: 68
Period size: 13 Copynumber: 3.8 Consensus size: 13
7634164 TATAAAATAG
*
7634174 TATATATTATTTT
1 TATATATTATTAT
7634187 TATATATTATTCAT
1 TATATATTATT-AT
7634201 TATATTATT-TTAT
1 TATA-TATTATTAT
7634214 TATATATTATT
1 TATATATTATT
7634225 CCCTATATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
12 4 0.12
13 19 0.56
14 7 0.21
15 4 0.12
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (13 bp):
TATATATTATTAT
Found at i:7634204 original size:27 final size:27
Alignment explanation
Indices: 7634176--7634235 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
7634166 TAAAATAGTA
7634176 TATATTA-TTT-TTATATATTATTCAT
1 TATATTATTTTATTATATATTATTCAT
**
7634201 TATATTATTTTATTATATATTATTCCC
1 TATATTATTTTATTATATATTATTCAT
7634228 TATATTAT
1 TATATTAT
7634236 CCTTCTTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
25 7 0.23
26 3 0.10
27 21 0.68
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.62
Consensus pattern (27 bp):
TATATTATTTTATTATATATTATTCAT
Found at i:7634209 original size:15 final size:15
Alignment explanation
Indices: 7634174--7634272 Score: 59
Period size: 13 Copynumber: 6.8 Consensus size: 15
7634164 TATAAAATAG
*
7634174 TATA-TATTATT-TT
1 TATATTATTATTCAT
7634187 TATA-TATTATTCAT
1 TATATTATTATTCAT
7634201 TATATTATT-TT-AT
1 TATATTATTATTCAT
**
7634214 TATA-TATTATTCCC
1 TATATTATTATTCAT
** *
7634228 TATATTATCCTTCTTT
1 TATATTATTATTC-AT
7634244 TATTATATATTATTTCAT
1 TA-TAT-TATTA-TTCAT
7634262 TAT-TTATTATT
1 TATATTATTATT
7634273 AAATTTGTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
12 4 0.06
13 19 0.28
14 13 0.19
15 15 0.22
16 3 0.04
17 4 0.06
18 6 0.09
19 3 0.04
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (15 bp):
TATATTATTATTCAT
Found at i:7634222 original size:20 final size:20
Alignment explanation
Indices: 7634174--7634224 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 20
7634164 TATAAAATAG
7634174 TATATATTATTTTTATATAT
1 TATATATTATTTTTATATAT
7634194 TAT-TCATTATATTATT-T-TAT
1 TATAT-ATTAT-TT-TTATATAT
7634214 TATATATTATT
1 TATATATTATT
7634225 CCCTATATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 9
0.75 0.00 0.25
Matches are distributed among these distances:
19 2 0.07
20 19 0.70
21 4 0.15
22 2 0.07
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (20 bp):
TATATATTATTTTTATATAT
Found at i:7634489 original size:17 final size:16
Alignment explanation
Indices: 7634469--7634523 Score: 67
Period size: 17 Copynumber: 3.4 Consensus size: 16
7634459 TATATTTCAT
7634469 TATATTTTATTTATATA
1 TATATTTTA-TTATATA
*
7634486 TATATTTTATTACATA
1 TATATTTTATTATATA
*
7634502 TCATATATTATTATATA
1 T-ATATTTTATTATATA
7634519 T-TATT
1 TATATT
7634524 CCCTATATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
15 3 0.09
16 7 0.21
17 23 0.70
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (16 bp):
TATATTTTATTATATA
Found at i:7634608 original size:55 final size:55
Alignment explanation
Indices: 7634546--7634730 Score: 133
Period size: 55 Copynumber: 3.1 Consensus size: 55
7634536 TTTCTTTTAT
7634546 TATATATTATTTCATTATTTATTATTAAATTTGTAAATTACTATAAACTAACATC
1 TATATATTATTTCATTATTTATTATTAAATTTGTAAATTACTATAAACTAACATC
* * * * * * *
7634601 TATATATTGTTATTA-TATTTAATGTCTATATTAT-TATATATTATTCCCTATATTATCCT-TCT
1 TATATATTATT-TCATTATTTATTAT-TAAATT-TGTA-A-ATTA----CTATA--A-ACTAAC-
* *
7634663 TTTAT
53 -AT-C
7634668 TATATATTATTTCATTATTTATTATTAAATTTGTAAATTACTATAAACTAACATC
1 TATATATTATTTCATTATTTATTATTAAATTTGTAAATTACTATAAACTAACATC
7634723 TATATATT
1 TATATATT
7634731 GTTATTATAT
Statistics
Matches: 94, Mismatches: 18, Indels: 36
0.64 0.12 0.24
Matches are distributed among these distances:
55 26 0.28
56 10 0.11
57 4 0.04
58 6 0.06
60 5 0.05
62 5 0.05
64 6 0.06
65 4 0.04
66 10 0.11
67 18 0.19
ACGTcount: A:0.36, C:0.09, G:0.02, T:0.53
Consensus pattern (55 bp):
TATATATTATTTCATTATTTATTATTAAATTTGTAAATTACTATAAACTAACATC
Found at i:7634639 original size:122 final size:122
Alignment explanation
Indices: 7634505--7634754 Score: 491
Period size: 122 Copynumber: 2.0 Consensus size: 122
7634495 TTACATATCA
*
7634505 TATATTATTATATATTATTCCCTATATTATCTTTCTTTTATTATATATTATTTCATTATTTATTA
1 TATATTATTATATATTATTCCCTATATTATCCTTCTTTTATTATATATTATTTCATTATTTATTA
7634570 TTAAATTTGTAAATTACTATAAACTAACATCTATATATTGTTATTATATTTAATGTC
66 TTAAATTTGTAAATTACTATAAACTAACATCTATATATTGTTATTATATTTAATGTC
7634627 TATATTATTATATATTATTCCCTATATTATCCTTCTTTTATTATATATTATTTCATTATTTATTA
1 TATATTATTATATATTATTCCCTATATTATCCTTCTTTTATTATATATTATTTCATTATTTATTA
7634692 TTAAATTTGTAAATTACTATAAACTAACATCTATATATTGTTATTATATTTAATGTC
66 TTAAATTTGTAAATTACTATAAACTAACATCTATATATTGTTATTATATTTAATGTC
7634749 TATATT
1 TATATT
7634755 CAAAATTTAT
Statistics
Matches: 127, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
122 127 1.00
ACGTcount: A:0.34, C:0.09, G:0.02, T:0.55
Consensus pattern (122 bp):
TATATTATTATATATTATTCCCTATATTATCCTTCTTTTATTATATATTATTTCATTATTTATTA
TTAAATTTGTAAATTACTATAAACTAACATCTATATATTGTTATTATATTTAATGTC
Found at i:7641256 original size:16 final size:16
Alignment explanation
Indices: 7641231--7641268 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
7641221 TCAGCTCATT
7641231 CCAT-AGTCTATGTAA
1 CCATCAGTCTATGTAA
7641246 CCATCAGTCTATGTAA
1 CCATCAGTCTATGTAA
7641262 CCATCAG
1 CCATCAG
7641269 ACACTTTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (16 bp):
CCATCAGTCTATGTAA
Found at i:7647532 original size:13 final size:13
Alignment explanation
Indices: 7647516--7647541 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7647506 CCTTTTCCCC
7647516 CTTTCTTTCTTTT
1 CTTTCTTTCTTTT
7647529 CTTTCTTTCTTTT
1 CTTTCTTTCTTTT
7647542 TCTCCTTCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (13 bp):
CTTTCTTTCTTTT
Found at i:7652452 original size:43 final size:43
Alignment explanation
Indices: 7652405--7652520 Score: 135
Period size: 43 Copynumber: 2.7 Consensus size: 43
7652395 TATTACATAT
* * * *
7652405 CGATGCCACTGTCCTAGACAAGGTCTTACACGAAATTGATTA-A
1 CGATGCCAATGTCCTAGACATGGTCTTACACGAAA-TCATAATA
* * *
7652448 CGATGCCAATATCCCAGACATGGTCTTACACGTAATCATAATA
1 CGATGCCAATGTCCTAGACATGGTCTTACACGAAATCATAATA
* *
7652491 CAATGACAATGTCCTAGACATGGTCTTACA
1 CGATGCCAATGTCCTAGACATGGTCTTACA
7652521 TGTAATCACA
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 4 0.07
43 57 0.93
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (43 bp):
CGATGCCAATGTCCTAGACATGGTCTTACACGAAATCATAATA
Found at i:7652785 original size:21 final size:21
Alignment explanation
Indices: 7652759--7652801 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7652749 CGATAACTTT
7652759 TGATTTCCTTCGATCTAAATC
1 TGATTTCCTTCGATCTAAATC
* * *
7652780 TGATTTCTTTCGTTCTTAATC
1 TGATTTCCTTCGATCTAAATC
7652801 T
1 T
7652802 CAATCAAGCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.19, C:0.21, G:0.09, T:0.51
Consensus pattern (21 bp):
TGATTTCCTTCGATCTAAATC
Found at i:7659978 original size:28 final size:28
Alignment explanation
Indices: 7659941--7659996 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
7659931 AAGCTAGAGA
7659941 AGTGCCAAAATTTAAAACACTATTTTAG
1 AGTGCCAAAATTTAAAACACTATTTTAG
*
7659969 AGTGCCAAAATTTAAAGCACTATTTTAG
1 AGTGCCAAAATTTAAAACACTATTTTAG
7659997 CTTCTTCTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.32
Consensus pattern (28 bp):
AGTGCCAAAATTTAAAACACTATTTTAG
Found at i:7667186 original size:40 final size:40
Alignment explanation
Indices: 7667103--7667365 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
7667093 TTGAATGCTG
* * * * * *
7667103 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
7667143 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
7667183 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
7667223 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
7667263 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
7667303 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
7667342 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
7667366 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:7667385 original size:79 final size:80
Alignment explanation
Indices: 7667142--7667400 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
7667132 AAGTGAATAT
* * * * * *
7667142 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
7667206 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
7667222 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
7667287 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
7667302 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
7667366 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
7667381 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
7667401 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:7674179 original size:22 final size:23
Alignment explanation
Indices: 7674154--7674196 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
7674144 TATCCCTACA
7674154 TGGAGTGTA-AGGATGGACGGAG
1 TGGAGTGTAGAGGATGGACGGAG
7674176 TGGAGTGTAGAGGATGGACGG
1 TGGAGTGTAGAGGATGGACGG
7674197 GTAGGACTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.26, C:0.05, G:0.51, T:0.19
Consensus pattern (23 bp):
TGGAGTGTAGAGGATGGACGGAG
Found at i:7674292 original size:34 final size:34
Alignment explanation
Indices: 7674216--7674292 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 34
7674206 CTGTTGCATT
**
7674216 ACTGATACTGTTACTGTAATGAGCTAAGGCCCAC
1 ACTGATACTACTACTGTAATGAGCTAAGGCCCAC
* * *
7674250 AATAATACTACTACTG-ATATGGGCTAAGGCCCAC
1 ACTGATACTACTACTGTA-ATGAGCTAAGGCCCAC
7674284 ACTGATACT
1 ACTGATACT
7674293 GGACTGTCAC
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
33 1 0.03
34 34 0.97
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.26
Consensus pattern (34 bp):
ACTGATACTACTACTGTAATGAGCTAAGGCCCAC
Found at i:7683066 original size:40 final size:40
Alignment explanation
Indices: 7682795--7683047 Score: 431
Period size: 40 Copynumber: 6.3 Consensus size: 40
7682785 NNNNNNNNNN
7682795 CCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTC
7682835 CCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTC
7682875 CCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTC
7682915 CCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTC
* *
7682955 CCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTAAT-TCCGGGCTAAGTC
*
7682995 CCGAAGGCATTTGTGCGAGCT-ACT-ATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAG-TGACTAAT-TCCGGGCTAAGTC
7683035 CCGAAGGCATTTG
1 CCGAAGGCATTTG
7683048 AGCGAGTAGC
Statistics
Matches: 209, Mismatches: 2, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
39 2 0.01
40 206 0.99
41 1 0.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTC
Found at i:7688028 original size:34 final size:33
Alignment explanation
Indices: 7687975--7688054 Score: 101
Period size: 34 Copynumber: 2.4 Consensus size: 33
7687965 TTAGCCCCTT
* *
7687975 TTTCAGTAATAGTCGCAGTCTTGGCCTGAGCCC
1 TTTCAGTAACAGTCGCAGTCTGGGCCTGAGCCC
7688008 ATTTCAGTAACAGT-GACAGTCTGGGCCTGAGCCC
1 -TTTCAGTAACAGTCG-CAGTCTGGGCCTGAGCCC
7688042 TCTTCAGT-ACAGT
1 T-TTCAGTAACAGT
7688055 ATGCAAACAA
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
33 7 0.17
34 35 0.83
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.29
Consensus pattern (33 bp):
TTTCAGTAACAGTCGCAGTCTGGGCCTGAGCCC
Found at i:7693322 original size:33 final size:33
Alignment explanation
Indices: 7693280--7693345 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
7693270 ATCTAACACT
*
7693280 ACTCCACCTTGAATTAGATTATGTAGAGAGCAA
1 ACTCCACCTTGAATCAGATTATGTAGAGAGCAA
*
7693313 ACTCCACCTTGAATCAGATTATTTAGAGAGCAA
1 ACTCCACCTTGAATCAGATTATGTAGAGAGCAA
7693346 CGAATCATCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (33 bp):
ACTCCACCTTGAATCAGATTATGTAGAGAGCAA
Found at i:7697804 original size:18 final size:18
Alignment explanation
Indices: 7697763--7697804 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
7697753 ACAAATTCCT
7697763 TAAAAATCTTAGAAAATA
1 TAAAAATCTTAGAAAATA
*
7697781 TTAAAA-CTTAGAAAATTA
1 TAAAAATCTTAGAAAA-TA
7697799 TAAAAA
1 TAAAAA
7697805 AAATAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.29
Consensus pattern (18 bp):
TAAAAATCTTAGAAAATA
Found at i:7699305 original size:3 final size:3
Alignment explanation
Indices: 7699294--7699373 Score: 65
Period size: 3 Copynumber: 26.3 Consensus size: 3
7699284 AATAATAGCT
* * * * *
7699294 ATA AAA ATA ATA ATA ATA ATA ATA ACA ATA ATG ACA ATAA AGA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA
*
7699340 ATA GA-A ATA ATA ATA ATA ATGA A-A ATA AGA ATA A
1 ATA -ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA A
7699374 CATTTGGAAT
Statistics
Matches: 60, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
2 3 0.05
3 52 0.87
4 5 0.08
ACGTcount: A:0.68, C:0.03, G:0.06, T:0.24
Consensus pattern (3 bp):
ATA
Found at i:7699565 original size:54 final size:54
Alignment explanation
Indices: 7699505--7699612 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
7699495 AGTATATAGT
* * **
7699505 ATAATAACAATTAATATGAAATTA-ATTAGTTTAATAATAATAATAATAATAATA
1 ATAATAACAA-AAATATGAAATTACAATAGTAAAATAATAATAATAATAATAATA
* * * *
7699559 ATAATAACAAAAATATTAAGTTACAATAGTAAAATAATAATAGTGATAATAATA
1 ATAATAACAAAAATATGAAATTACAATAGTAAAATAATAATAATAATAATAATA
7699613 GTATATTAGA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
53 10 0.22
54 35 0.78
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33
Consensus pattern (54 bp):
ATAATAACAAAAATATGAAATTACAATAGTAAAATAATAATAATAATAATAATA
Found at i:7699668 original size:3 final size:3
Alignment explanation
Indices: 7699536--7699654 Score: 91
Period size: 3 Copynumber: 39.7 Consensus size: 3
7699526 TTAATTAGTT
* * * *
7699536 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA CAA AAA TAT TAA GTTA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA
* * * * * *
7699582 CAA TAG TAA -AA TAA TAA TAG TGA TAA TAA TAG T-A TAT TAGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
*
7699626 CAA TAA TAA -AA TAA TAA GTAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA -TAA TAA TAA TA
7699655 GAGTATAAAT
Statistics
Matches: 89, Mismatches: 21, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
2 5 0.06
3 77 0.87
4 7 0.08
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:7699669 original size:14 final size:13
Alignment explanation
Indices: 7699632--7699669 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
7699622 ATAACAATAA
7699632 TAAAATAATA-AG
1 TAAAATAATAGAG
7699644 TAATAATAATAGAG
1 TAA-AATAATAGAG
7699658 TATAAATAATAG
1 TA-AAATAATAG
7699670 TTATGAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 3 0.13
13 7 0.30
14 12 0.52
15 1 0.04
ACGTcount: A:0.61, C:0.00, G:0.11, T:0.29
Consensus pattern (13 bp):
TAAAATAATAGAG
Found at i:7699695 original size:45 final size:43
Alignment explanation
Indices: 7699571--7699699 Score: 120
Period size: 42 Copynumber: 3.0 Consensus size: 43
7699561 AATAACAAAA
* * *
7699571 ATATTAAGTTACAATAGTAAAATAATAATAGTGATAATAATAGT
1 ATATTAAATAACAATAATAAAATAATAA-AGTGATAATAATAGT
* *
7699615 ATATTAGATAACAATAATAAAATAAT-AAGTAATAATAATAG-
1 ATATTAAATAACAATAATAAAATAATAAAGTGATAATAATAGT
* * *
7699656 AGTA-TAAATAATAGTTATGAAAATAATAACGAGTGATAATAATA
1 A-TATTAAATAACAATAAT-AAAATAATAA--AGTGATAATAATA
7699700 ATAACAGTGA
Statistics
Matches: 70, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
41 11 0.16
42 23 0.33
43 2 0.03
44 22 0.31
45 12 0.17
ACGTcount: A:0.56, C:0.02, G:0.11, T:0.31
Consensus pattern (43 bp):
ATATTAAATAACAATAATAAAATAATAAAGTGATAATAATAGT
Found at i:7699699 original size:19 final size:18
Alignment explanation
Indices: 7699677--7699714 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
7699667 TAGTTATGAA
*
7699677 AATAATAACGAGTGATAAT
1 AATAATAAC-AGTGACAAT
7699696 AATAATAACAGTGACAAT
1 AATAATAACAGTGACAAT
7699714 A
1 A
7699715 GTAGTAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.55, C:0.08, G:0.13, T:0.24
Consensus pattern (18 bp):
AATAATAACAGTGACAAT
Found at i:7701330 original size:21 final size:19
Alignment explanation
Indices: 7701306--7701350 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 19
7701296 GTGAAAATAC
*
7701306 CATAAAATTATTAAAAGTTTT
1 CATAAAATT-CTAAAA-TTTT
7701327 CATAAAATTCTAAAATTTT
1 CATAAAATTCTAAAATTTT
7701346 C-TAAA
1 CATAAA
7701351 TAAAAAAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 4 0.17
19 5 0.22
20 5 0.22
21 9 0.39
ACGTcount: A:0.49, C:0.09, G:0.02, T:0.40
Consensus pattern (19 bp):
CATAAAATTCTAAAATTTT
Found at i:7701409 original size:17 final size:17
Alignment explanation
Indices: 7701376--7701408 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
7701366 ATTCCAAACA
*
7701376 ATTTTTTAAATTTTTTT
1 ATTTCTTAAATTTTTTT
7701393 ATTTCTT-AATTTTTTT
1 ATTTCTTAAATTTTTTT
7701409 TTGAAGTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (17 bp):
ATTTCTTAAATTTTTTT
Found at i:7702354 original size:18 final size:17
Alignment explanation
Indices: 7702331--7702374 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
7702321 CAAAAAAATA
7702331 TATAAATTTTGGAACTTT
1 TATAAATTTTGGAA-TTT
*
7702349 TATAAATATTTTGAATTT
1 TATAAAT-TTTGGAATTT
*
7702367 TAAAAATT
1 TATAAATT
7702375 ATTTTGAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 1 0.04
18 16 0.70
19 6 0.26
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (17 bp):
TATAAATTTTGGAATTT
Found at i:7702379 original size:19 final size:18
Alignment explanation
Indices: 7702336--7702384 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
7702326 AAATATATAA
*
7702336 ATTTTGGAACTTTTATAAAT
1 ATTTT-GAA-TTTTAAAAAT
7702356 ATTTTGAATTTTAAAAATT
1 ATTTTGAATTTTAAAAA-T
7702375 ATTTTGAATT
1 ATTTTGAATT
7702385 ATTTTATTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 8 0.30
19 14 0.52
20 5 0.19
ACGTcount: A:0.37, C:0.02, G:0.08, T:0.53
Consensus pattern (18 bp):
ATTTTGAATTTTAAAAAT
Found at i:7710546 original size:39 final size:39
Alignment explanation
Indices: 7710502--7710580 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
7710492 TAATTTACCA
7710502 ATAGTAAAATTGGATTTCTAATGACATAATAGTAAATTT
1 ATAGTAAAATTGGATTTCTAATGACATAATAGTAAATTT
7710541 ATAGTAAAATTGGATTTCTAATGACATAATAGTAAATTT
1 ATAGTAAAATTGGATTTCTAATGACATAATAGTAAATTT
7710580 A
1 A
7710581 ACCCTTAACA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.44, C:0.05, G:0.13, T:0.38
Consensus pattern (39 bp):
ATAGTAAAATTGGATTTCTAATGACATAATAGTAAATTT
Found at i:7717018 original size:16 final size:15
Alignment explanation
Indices: 7716991--7717028 Score: 58
Period size: 16 Copynumber: 2.5 Consensus size: 15
7716981 GGGTTAAGAC
*
7716991 TAAAATTTTAAAATT
1 TAAAATTTTAAAAAT
7717006 TAAAATATTTAAAAAT
1 TAAAAT-TTTAAAAAT
7717022 TAAAATT
1 TAAAATT
7717029 GATCAAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.33
16 14 0.67
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TAAAATTTTAAAAAT
Found at i:7722245 original size:34 final size:35
Alignment explanation
Indices: 7722179--7722245 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
7722169 CAAACACCAG
7722179 AAAATATTTTCCAGTAAGTCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAGTCATTTTACAGAAAAGT
* *
7722214 AAAATATTTTCCAG-AATTCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAGTCATTTTACAGAAAA
7722246 CATTTTACAG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 16 0.53
35 14 0.47
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.34
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAGTCATTTTACAGAAAAGT
Found at i:7722837 original size:2 final size:2
Alignment explanation
Indices: 7722830--7722858 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7722820 CCAAAAAGGG
7722830 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
7722859 ACACCAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:7724578 original size:98 final size:98
Alignment explanation
Indices: 7724447--7724631 Score: 327
Period size: 98 Copynumber: 1.9 Consensus size: 98
7724437 GAGGCACAGA
* *
7724447 CTCAAGCAAATAGGCCGTGTGGGCCCACAGGGCGTGTGGGAATTTGAGCCAAGCCGTGTGATCCA
1 CTCAAGCAAATAAGCCGTGTGGGCCCACAGGGCGTATGGGAATTTGAGCCAAGCCGTGTGATCCA
7724512 CACGAGTAAGACCAATTTGGGCTATGTGCGTGC
66 CACGAGTAAGACCAATTTGGGCTATGTGCGTGC
*
7724545 CTCAAGCAAATAAGCCGTGTGGG-CCACACGGGCGTATGGGAATTTGAGCCAGGCCGTGTGATCC
1 CTCAAGCAAATAAGCCGTGTGGGCCCACA-GGGCGTATGGGAATTTGAGCCAAGCCGTGTGATCC
7724609 ACACGAGTAAGACCAATTTGGGC
65 ACACGAGTAAGACCAATTTGGGC
7724632 CTTGTGACCG
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
97 5 0.06
98 78 0.94
ACGTcount: A:0.25, C:0.24, G:0.32, T:0.19
Consensus pattern (98 bp):
CTCAAGCAAATAAGCCGTGTGGGCCCACAGGGCGTATGGGAATTTGAGCCAAGCCGTGTGATCCA
CACGAGTAAGACCAATTTGGGCTATGTGCGTGC
Found at i:7725893 original size:16 final size:15
Alignment explanation
Indices: 7725872--7725918 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
7725862 ATAATATTAG
7725872 ATTATATAAATGTATT
1 ATTATATAAAT-TATT
7725888 ATTATA-AACATTATT
1 ATTATATAA-ATTATT
* *
7725903 TTTATATAAATAATT
1 ATTATATAAATTATT
7725918 A
1 A
7725919 AAATTTTTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
15 16 0.62
16 10 0.38
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (15 bp):
ATTATATAAATTATT
Found at i:7727275 original size:22 final size:22
Alignment explanation
Indices: 7727237--7727281 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
7727227 ATTTGGATAG
*
7727237 ATTATTATTTATTAAATTAAAT
1 ATTATTATCTATTAAATTAAAT
*
7727259 ATTATT-TCTATTCAAATTCAAT
1 ATTATTATCTATT-AAATTAAAT
7727281 A
1 A
7727282 GTAAAAGTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (22 bp):
ATTATTATCTATTAAATTAAAT
Found at i:7729602 original size:208 final size:207
Alignment explanation
Indices: 7729244--7729658 Score: 787
Period size: 208 Copynumber: 2.0 Consensus size: 207
7729234 TTTAAACTTT
7729244 GGTAACTGAAATCATCTTATGATTTGTAAAAAATTCGTTTAGAAGGATATTTTAGATATTTAGAC
1 GGTAACTGAAATCATCTTATGATTTGTAAAAAATTCGTTTAGAAGGATATTTTAGATATTTAGAC
7729309 AAACGAGAAATCGCAACCCAGCATGTTAGGACACTACTTCTCGAATTCCTAAATATCGAAACATT
66 AAACGAGAAATCGCAACCCAGCATGTTAGGACACTACTTCTCGAATTCCTAAATATCGAAACATT
7729374 GCCTTACTTTTTTAAAAAAAAATACCTTTTGAAATGAGAT-ATTTTTTGTTTTGAAAATGATGAT
131 GCCTTAC-TTTTTAAAAAAAAAT-CCTTTTGAAATGAGATGATTTTTTGTTTTGAAAATGATGAT
7729438 GTATTTTACAAAAA
194 GTATTTTACAAAAA
7729452 GGTAACTGAAATCATCTTATGATTTGTAAAAAATTCGTTTAGAAGGATATTTTAGATATTTAGAC
1 GGTAACTGAAATCATCTTATGATTTGTAAAAAATTCGTTTAGAAGGATATTTTAGATATTTAGAC
7729517 AAACGAGAAATCGCAACCCAGCATGTTAGGACACTACTTCTCGAATTCCTAAATATCGAAACATT
66 AAACGAGAAATCGCAACCCAGCATGTTAGGACACTACTTCTCGAATTCCTAAATATCGAAACATT
* *
7729582 GCCTTACTTTTTAAAAAAAAATCCTTTTGAAATGGGATGTTTTTTTGTTTTGAAAATGATGATGT
131 GCCTTACTTTTTAAAAAAAAATCCTTTTGAAATGAGATGATTTTTTGTTTTGAAAATGATGATGT
7729647 ATTTTACAAAAA
196 ATTTTACAAAAA
7729659 AATTAACATT
Statistics
Matches: 204, Mismatches: 2, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
206 15 0.07
207 52 0.25
208 137 0.67
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.35
Consensus pattern (207 bp):
GGTAACTGAAATCATCTTATGATTTGTAAAAAATTCGTTTAGAAGGATATTTTAGATATTTAGAC
AAACGAGAAATCGCAACCCAGCATGTTAGGACACTACTTCTCGAATTCCTAAATATCGAAACATT
GCCTTACTTTTTAAAAAAAAATCCTTTTGAAATGAGATGATTTTTTGTTTTGAAAATGATGATGT
ATTTTACAAAAA
Found at i:7730338 original size:15 final size:16
Alignment explanation
Indices: 7730318--7730417 Score: 72
Period size: 15 Copynumber: 6.3 Consensus size: 16
7730308 GATTAATAAA
7730318 ATAAAAATAT-ATATG
1 ATAAAAATATAATATG
7730333 ATAAAATGTATATAATAT-
1 ATAAAA---ATATAATATG
*
7730351 ATAAAAATATCATATGG
1 ATAAAAATATAATAT-G
7730368 AGT-AAAATATAATATG
1 A-TAAAAATATAATATG
7730384 -TAATAAA-ATAATATG
1 ATAA-AAATATAATATG
7730399 A-AAACAA-ATAATAT-
1 ATAAA-AATATAATATG
7730413 ATAAA
1 ATAAA
7730418 TATAGTGAAA
Statistics
Matches: 71, Mismatches: 2, Indels: 24
0.73 0.02 0.25
Matches are distributed among these distances:
14 3 0.04
15 37 0.52
16 4 0.06
17 12 0.17
18 11 0.15
19 4 0.06
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (16 bp):
ATAAAAATATAATATG
Found at i:7730349 original size:34 final size:39
Alignment explanation
Indices: 7730311--7730394 Score: 99
Period size: 33 Copynumber: 2.3 Consensus size: 39
7730301 ATCATATGAT
*
7730311 TAATAAAATAAAAATAT-ATAT-GA-TAAAATGT-ATA-
1 TAATAAAATAAAAATATCATATGGAGTAAAATATAATAG
*
7730345 TAAT-ATATAAAAATATCATATGGAGTAAAATATAATATG
1 TAATAAAATAAAAATATCATATGGAGTAAAATATAATA-G
7730384 TAATAAAATAA
1 TAATAAAATAA
7730395 TATGAAAACA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
33 11 0.28
34 8 0.20
35 2 0.05
36 7 0.17
37 3 0.08
39 4 0.10
40 5 0.12
ACGTcount: A:0.60, C:0.01, G:0.07, T:0.32
Consensus pattern (39 bp):
TAATAAAATAAAAATATCATATGGAGTAAAATATAATAG
Found at i:7730376 original size:17 final size:17
Alignment explanation
Indices: 7730354--7730393 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
7730344 ATAATATATA
* *
7730354 AAAATATCATATGGAGT
1 AAAATATAATATGGAAT
*
7730371 AAAATATAATATGTAAT
1 AAAATATAATATGGAAT
7730388 AAAATA
1 AAAATA
7730394 ATATGAAAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.57, C:0.03, G:0.10, T:0.30
Consensus pattern (17 bp):
AAAATATAATATGGAAT
Found at i:7731877 original size:17 final size:17
Alignment explanation
Indices: 7731855--7731887 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7731845 GTATTCGAGC
7731855 TTGGGT-GTAACCGGGTT
1 TTGGGTAGTAA-CGGGTT
7731872 TTGGGTAGTAACGGGT
1 TTGGGTAGTAACGGGT
7731888 CTGCTGGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.15, C:0.09, G:0.42, T:0.33
Consensus pattern (17 bp):
TTGGGTAGTAACGGGTT
Found at i:7734409 original size:47 final size:47
Alignment explanation
Indices: 7734340--7734445 Score: 126
Period size: 47 Copynumber: 2.3 Consensus size: 47
7734330 ACCAACACAC
* * * *
7734340 CAGTACGGCACTTAGTGCCTCATC-GACTT-AGCCGAAGTAAACAGTAA
1 CAGTACGGCACTCAGTACCTCATCAGA-TTAAACCAAAGT-AACAGTAA
*
7734387 CAGTACGGTACTCAGTACCTCATCAGATTAAACCAAAGTAACAGTAA
1 CAGTACGGCACTCAGTACCTCATCAGATTAAACCAAAGTAACAGTAA
*
7734434 CAGTACGACACT
1 CAGTACGGCACT
7734446 TATAGTGCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
47 41 0.82
48 9 0.18
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (47 bp):
CAGTACGGCACTCAGTACCTCATCAGATTAAACCAAAGTAACAGTAA
Found at i:7737826 original size:27 final size:27
Alignment explanation
Indices: 7737796--7737850 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
7737786 ATATAATTTT
*
7737796 TAAATTTTTTTCATTTTTAAATAAAAA
1 TAAATTTTTTTCATTTTAAAATAAAAA
7737823 TAAATTTTTTTCATTTTAAAATAAAAA
1 TAAATTTTTTTCATTTTAAAATAAAAA
7737850 T
1 T
7737851 TATAAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (27 bp):
TAAATTTTTTTCATTTTAAAATAAAAA
Found at i:7737918 original size:10 final size:10
Alignment explanation
Indices: 7737901--7737933 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
7737891 TAAATTTTAA
7737901 TAAA-TAAAT
1 TAAATTAAAT
7737910 TAAATTAAAT
1 TAAATTAAAT
7737920 TAAATTAAAT
1 TAAATTAAAT
7737930 TAAA
1 TAAA
7737934 ATGATTAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.17
10 19 0.83
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
TAAATTAAAT
Found at i:7737925 original size:15 final size:14
Alignment explanation
Indices: 7737901--7737933 Score: 57
Period size: 15 Copynumber: 2.3 Consensus size: 14
7737891 TAAATTTTAA
7737901 TAAATAAATTAAAT
1 TAAATAAATTAAAT
7737915 TAAATTAAATTAAAT
1 TAAA-TAAATTAAAT
7737930 TAAA
1 TAAA
7737934 ATGATTAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
TAAATAAATTAAAT
Found at i:7738409 original size:20 final size:20
Alignment explanation
Indices: 7738386--7738452 Score: 68
Period size: 20 Copynumber: 3.4 Consensus size: 20
7738376 AAATTATAAT
7738386 TTTTAAAATAAAATAAAAAA
1 TTTTAAAATAAAATAAAAAA
*
7738406 TTTT-GAA-AAAATAAAAAA
1 TTTTAAAATAAAATAAAAAA
* *
7738424 TATTTAAAATTCAAA-AAAAGA
1 T-TTTAAAA-TAAAATAAAAAA
7738445 TTTTAAAA
1 TTTTAAAA
7738453 AATATATTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
18 12 0.31
19 5 0.13
20 13 0.33
21 6 0.15
22 3 0.08
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.31
Consensus pattern (20 bp):
TTTTAAAATAAAATAAAAAA
Found at i:7738416 original size:38 final size:37
Alignment explanation
Indices: 7738364--7738483 Score: 94
Period size: 39 Copynumber: 3.4 Consensus size: 37
7738354 TCTCCTTTTA
*
7738364 AAAAAAATTT-AAAAATTATAATTTTTAAAATAAAAT
1 AAAAAATTTTAAAAAATTATAATTTTTAAAATAAAAT
* * * *
7738400 AAAAAATTTTGAAAAAATAAAAAATATTTAAAATTCAAA-
1 AAAAAATTTT-AAAAAAT-TATAATTTTTAAAA-TAAAAT
*
7738439 AAAAGATTTTAAAAAA-TAT-A-TTTT-AAA-AAAAT
1 AAAAAATTTTAAAAAATTATAATTTTTAAAATAAAAT
*
7738471 -AAAAATTCTAAAA
1 AAAAAATTTTAAAA
7738484 TTCAATGTTT
Statistics
Matches: 67, Mismatches: 12, Indels: 15
0.71 0.13 0.16
Matches are distributed among these distances:
31 14 0.21
33 3 0.04
34 3 0.04
35 1 0.01
36 10 0.15
38 12 0.18
39 20 0.30
40 4 0.06
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (37 bp):
AAAAAATTTTAAAAAATTATAATTTTTAAAATAAAAT
Found at i:7738972 original size:30 final size:31
Alignment explanation
Indices: 7738914--7738973 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
7738904 AAATTTTTAA
7738914 AAATAAAAAATAAATAAAATTATTAAAAATT
1 AAATAAAAAATAAATAAAATTATTAAAAATT
* *
7738945 AAATTAAAAAT-AATATATATT-TTAAAAAT
1 AAATAAAAAATAAATA-AAATTATTAAAAAT
7738974 ATAGGTGGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 12 0.46
31 14 0.54
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (31 bp):
AAATAAAAAATAAATAAAATTATTAAAAATT
Found at i:7740068 original size:5 final size:5
Alignment explanation
Indices: 7740058--7740087 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
7740048 AAAAAAGGGA
7740058 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG
7740088 CACTTCATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:7740884 original size:35 final size:35
Alignment explanation
Indices: 7740801--7740885 Score: 100
Period size: 35 Copynumber: 2.4 Consensus size: 35
7740791 GAAGTGGTTG
* *
7740801 TTGAACCACTAAACTTTAAACCTTGAACCCTTAACC
1 TTGAACC-CTAAACTTTAAACCATGAACCCTGAACC
* *
7740837 TT-AAGCCCTAAACTTTTAATCATGAACCCTGAACC
1 TTGAA-CCCTAAACTTTAAACCATGAACCCTGAACC
*
7740872 TTGAACCTTAAACT
1 TTGAACCCTAAACT
7740886 CTAATTCTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
35 36 0.86
36 6 0.14
ACGTcount: A:0.35, C:0.28, G:0.07, T:0.29
Consensus pattern (35 bp):
TTGAACCCTAAACTTTAAACCATGAACCCTGAACC
Found at i:7741604 original size:21 final size:22
Alignment explanation
Indices: 7741580--7741627 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
7741570 ACCCAAAATC
7741580 CTAAACCT-TAAACACTAAACT
1 CTAAACCTGTAAACACTAAACT
* *
7741601 CTAAA-TTGTAAACCCTAAACT
1 CTAAACCTGTAAACACTAAACT
*
7741622 CAAAAC
1 CTAAAC
7741628 TCAAAATCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 1 0.05
21 21 0.95
ACGTcount: A:0.48, C:0.27, G:0.02, T:0.23
Consensus pattern (22 bp):
CTAAACCTGTAAACACTAAACT
Found at i:7741771 original size:7 final size:7
Alignment explanation
Indices: 7741693--7741767 Score: 64
Period size: 7 Copynumber: 10.9 Consensus size: 7
7741683 ACCCAACCTC
*
7741693 AAACTCA
1 AAACCCA
*
7741700 AAACCTA
1 AAACCCA
*
7741707 AAACTCA
1 AAACCCA
*
7741714 AAACTCA
1 AAACCCA
7741721 AAA-CCA
1 AAACCCA
*
7741727 TAA-CCA
1 AAACCCA
7741733 TAAACCCA
1 -AAACCCA
7741741 AAACCCA
1 AAACCCA
*
7741748 AAACCTA
1 AAACCCA
*
7741755 AAACCCC
1 AAACCCA
7741762 AAACCC
1 AAACCC
7741768 CAAATATGAC
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
6 7 0.12
7 46 0.82
8 3 0.05
ACGTcount: A:0.55, C:0.36, G:0.00, T:0.09
Consensus pattern (7 bp):
AAACCCA
Found at i:7742158 original size:21 final size:20
Alignment explanation
Indices: 7742120--7742162 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
7742110 TATATTATTT
7742120 TTATATTAAAATTTTAAGCAA
1 TTATATTAAAATTTTAAG-AA
*
7742141 TTAT-TTATAATTTATAAGAA
1 TTATATTAAAATTT-TAAGAA
7742161 TT
1 TT
7742163 TTATGCTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (20 bp):
TTATATTAAAATTTTAAGAA
Found at i:7744072 original size:16 final size:16
Alignment explanation
Indices: 7744051--7744086 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7744041 AAGTTCCATT
7744051 CTAATCATTTAGAGTC
1 CTAATCATTTAGAGTC
* *
7744067 CTAATCGTTTAGAGTT
1 CTAATCATTTAGAGTC
7744083 CTAA
1 CTAA
7744087 ATTAAATCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.39
Consensus pattern (16 bp):
CTAATCATTTAGAGTC
Found at i:7747676 original size:14 final size:14
Alignment explanation
Indices: 7747591--7747683 Score: 64
Period size: 14 Copynumber: 6.7 Consensus size: 14
7747581 GGTTTAGAGC
*
7747591 TTAAGATTTAGGGT
1 TTAAGATTTAAGGT
* *
7747605 CTATGATTTAAGGT
1 TTAAGATTTAAGGT
*
7747619 TT-AGAATTTTAGGT
1 TTAAG-ATTTAAGGT
* ** *
7747633 TTATGGCTTAGGGT
1 TTAAGATTTAAGGT
*
7747647 TTAAG-TTTAAGAT
1 TTAAGATTTAAGGT
*
7747660 TTAAGATTTATGGT
1 TTAAGATTTAAGGT
*
7747674 TTAAGGTTTA
1 TTAAGATTTA
7747684 GGGCTCAATG
Statistics
Matches: 58, Mismatches: 18, Indels: 6
0.71 0.22 0.07
Matches are distributed among these distances:
13 11 0.19
14 46 0.79
15 1 0.02
ACGTcount: A:0.28, C:0.02, G:0.24, T:0.46
Consensus pattern (14 bp):
TTAAGATTTAAGGT
Found at i:7750455 original size:30 final size:30
Alignment explanation
Indices: 7750421--7750481 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
7750411 TCCTTAACTC
7750421 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
7750451 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
7750481 A
1 A
7750482 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:7751394 original size:27 final size:26
Alignment explanation
Indices: 7751351--7751425 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 26
7751341 GGCTTAAAGG
* * * *
7751351 TTAAGATTTAAAGTTTAGTGTTAAGAT
1 TTAAGATTTAGA-TTTAGGGTTAAAAC
7751378 TTAAGATTTAGGATTTAGGGTTAAAAC
1 TTAAGATTTA-GATTTAGGGTTAAAAC
*
7751405 TTAAGACTTATGATTTAGGGT
1 TTAAGATTTA-GATTTAGGGT
7751426 ATAACTTTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
27 40 0.98
28 1 0.02
ACGTcount: A:0.35, C:0.03, G:0.21, T:0.41
Consensus pattern (26 bp):
TTAAGATTTAGATTTAGGGTTAAAAC
Found at i:7751508 original size:21 final size:21
Alignment explanation
Indices: 7751483--7751532 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
7751473 GGGTTTTATT
*
7751483 AAAATAAATTT-GATAATACAA
1 AAAATAAATTTGGA-AAAACAA
7751504 AAAATAAATTTGGAAAAACAA
1 AAAATAAATTTGGAAAAACAA
*
7751525 AACATAAA
1 AAAATAAA
7751533 GGAGCTCATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 24 0.92
22 2 0.08
ACGTcount: A:0.66, C:0.06, G:0.06, T:0.22
Consensus pattern (21 bp):
AAAATAAATTTGGAAAAACAA
Found at i:7754307 original size:16 final size:16
Alignment explanation
Indices: 7754286--7754319 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
7754276 AGCTAGTAGC
7754286 ACATTATCAAAAATTA
1 ACATTATCAAAAATTA
7754302 ACATTATCAAAAATTA
1 ACATTATCAAAAATTA
7754318 AC
1 AC
7754320 TTTTTTGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.29
Consensus pattern (16 bp):
ACATTATCAAAAATTA
Found at i:7756135 original size:7 final size:7
Alignment explanation
Indices: 7756123--7756158 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
7756113 TTTTTTATAC
7756123 TAATAAA
1 TAATAAA
7756130 TAATAAA
1 TAATAAA
7756137 TAATGAAA
1 TAAT-AAA
*
7756145 TAATATA
1 TAATAAA
7756152 TAATAAA
1 TAATAAA
7756159 AGGAAGATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (7 bp):
TAATAAA
Found at i:7756147 original size:15 final size:14
Alignment explanation
Indices: 7756123--7756158 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
7756113 TTTTTTATAC
7756123 TAATAAATAATAAA
1 TAATAAATAATAAA
*
7756137 TAATGAAATAATATA
1 TAAT-AAATAATAAA
7756152 TAATAAA
1 TAATAAA
7756159 AGGAAGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (14 bp):
TAATAAATAATAAA
Found at i:7756188 original size:10 final size:10
Alignment explanation
Indices: 7756175--7756247 Score: 53
Period size: 10 Copynumber: 7.2 Consensus size: 10
7756165 ATAAATAGGG
7756175 AATAATATAT
1 AATAATATAT
7756185 AATAATATAT
1 AATAATATAT
* *
7756195 GAT-ATGTAAT
1 AATAATAT-AT
*
7756205 AA-AAAATAT
1 AATAATATAT
*
7756214 AAATAAAATAT
1 -AATAATATAT
7756225 AATGAA-ATAT
1 AAT-AATATAT
7756235 AATAATATGAT
1 AATAATAT-AT
7756246 AA
1 AA
7756248 CTATCATATA
Statistics
Matches: 51, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
9 7 0.14
10 31 0.61
11 13 0.25
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (10 bp):
AATAATATAT
Found at i:7756469 original size:18 final size:18
Alignment explanation
Indices: 7756430--7756482 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
7756420 AAATAAAATG
*
7756430 TATAATAATAA-AAATAA
1 TATAATAATAATATATAA
7756447 TATAATGAATAATATATAA
1 TATAAT-AATAATATATAA
*
7756466 -ATAAAAAATAATATATA
1 TAT-AATAATAATATATA
7756483 TTATTTTATA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 6 0.19
18 18 0.58
19 7 0.23
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (18 bp):
TATAATAATAATATATAA
Found at i:7756477 original size:25 final size:25
Alignment explanation
Indices: 7756350--7756477 Score: 73
Period size: 25 Copynumber: 5.0 Consensus size: 25
7756340 CATAATTTAT
* * *
7756350 AATAAAATAAAAATAAAAAATGCAAGG
1 AATAATATATAAATAAAAAAT--AATG
*
7756377 AATAATATATATAGTAAAACATATAATG
1 AATAATATATA-AATAAAA-A-ATAATG
* * ** *
7756405 TATAATAAGATTTATAAATAA-AATG
1 AATAAT-ATATAAATAAAAAATAATG
* *
7756430 TATAATA-ATAAA-AATAATATAATG
1 AATAATATATAAATAA-AAAATAATG
7756454 AATAATATATAAATAAAAAATAAT
1 AATAATATATAAATAAAAAATAAT
7756478 ATATATTATT
Statistics
Matches: 77, Mismatches: 16, Indels: 18
0.69 0.14 0.16
Matches are distributed among these distances:
22 2 0.03
23 5 0.06
24 11 0.14
25 22 0.29
26 3 0.04
27 10 0.13
28 18 0.23
29 4 0.05
30 2 0.03
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (25 bp):
AATAATATATAAATAAAAAATAATG
Found at i:7758142 original size:44 final size:44
Alignment explanation
Indices: 7758090--7758684 Score: 762
Period size: 44 Copynumber: 13.5 Consensus size: 44
7758080 ACTTAAGAAT
* * * *
7758090 GCCAAATCTGTTATCTCCGACCTGCTTTTTGACAATACAGAGAC
1 GCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
** * *
7758134 GCTGAATCTGTTATCTTTGATCTGCTCTCTGACAATACAGAGAT
1 GCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
*
7758178 ACCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
1 GCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * **
7758222 GCCAAAT-TCGCTATCTTCGATATGCTCTCTGACAATACAGAGGT
1 GCCAAATCT-GTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
*
7758266 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
1 GCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* **
7758310 GCCAAATCT-TCTATTTTCGATCTGCTCTCTGACAATACAGAGGT
1 GCCAAATCTGT-TATCTTCGATCTGCTCTCTGACAATACAGAGAC
* *
7758354 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATATAGAGAC
1 GCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* *
7758398 GCCAAATCTGTTCTCTTCGATCTGCTCTCTGACAATACAGAGAT
1 GCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* *
7758442 GCCAAATCTGCTATCTTCGATTTGCTCTCTGACAATACAGAGAC
1 GCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * * ** * * *
7758486 GTCAAATCTGCTATGTTCGATCTATTGTTTGACAATATAGAGAC
1 GCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * * *
7758530 ACCAAATATGTTCTCTTCGATTTGCTCTCTGACAATACAGAGAC
1 GCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * * * *
7758574 GTCAAATCTGCTATGTTCGATCTGCTCTCTAACAATATAGAGAC
1 GCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * *
7758618 ACCAAATCTGTTCTCTTCGATTTGCTCTCTGACAATACAGAGAC
1 GCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
*
7758662 GCCAAATCTGCTATCTTCGATCT
1 GCCAAATCTGTTATCTTCGATCT
7758685 ACATTGTCTC
Statistics
Matches: 468, Mismatches: 79, Indels: 8
0.84 0.14 0.01
Matches are distributed among these distances:
43 1 0.00
44 466 1.00
45 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (44 bp):
GCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
Found at i:7770521 original size:7 final size:7
Alignment explanation
Indices: 7770509--7770544 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
7770499 TTTTTTATAC
7770509 TAATAAA
1 TAATAAA
7770516 TAATAAA
1 TAATAAA
7770523 TAATGAAA
1 TAAT-AAA
*
7770531 TAATATA
1 TAATAAA
7770538 TAATAAA
1 TAATAAA
7770545 AGGAAGATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (7 bp):
TAATAAA
Found at i:7770533 original size:15 final size:14
Alignment explanation
Indices: 7770509--7770544 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
7770499 TTTTTTATAC
7770509 TAATAAATAATAAA
1 TAATAAATAATAAA
*
7770523 TAATGAAATAATATA
1 TAAT-AAATAATAAA
7770538 TAATAAA
1 TAATAAA
7770545 AGGAAGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (14 bp):
TAATAAATAATAAA
Found at i:7770576 original size:10 final size:10
Alignment explanation
Indices: 7770529--7770634 Score: 56
Period size: 10 Copynumber: 10.2 Consensus size: 10
7770519 TAAATAATGA
7770529 AATAATATAT
1 AATAATATAT
* *
7770539 AATAAAAGGA-
1 AATAATA-TAT
7770549 AGATAATATAGGT
1 A-ATAATATA--T
7770562 AATAATATAT
1 AATAATATAT
7770572 AATAATATAT
1 AATAATATAT
* *
7770582 GAT-ATGTAAT
1 AATAATAT-AT
*
7770592 AA-AAAATAT
1 AATAATATAT
*
7770601 AAATAAAATAT
1 -AATAATATAT
* *
7770612 AAAAAAATAT
1 AATAATATAT
7770622 AATAATATGAT
1 AATAATAT-AT
7770633 AA
1 AA
7770635 CTATCATATA
Statistics
Matches: 74, Mismatches: 12, Indels: 19
0.70 0.11 0.18
Matches are distributed among these distances:
9 5 0.07
10 43 0.58
11 17 0.23
12 8 0.11
13 1 0.01
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.30
Consensus pattern (10 bp):
AATAATATAT
Found at i:7771477 original size:9 final size:9
Alignment explanation
Indices: 7771463--7771517 Score: 83
Period size: 9 Copynumber: 6.1 Consensus size: 9
7771453 TGCTGGGCAG
7771463 CACGCGCCA
1 CACGCGCCA
*
7771472 CACGCGCCG
1 CACGCGCCA
* *
7771481 CACGCGGCG
1 CACGCGCCA
7771490 CACGCGCCA
1 CACGCGCCA
7771499 CACGCGCCA
1 CACGCGCCA
7771508 CACGCGCCA
1 CACGCGCCA
7771517 C
1 C
7771518 CGTATGCGGT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 42 1.00
ACGTcount: A:0.18, C:0.55, G:0.27, T:0.00
Consensus pattern (9 bp):
CACGCGCCA
Found at i:7771500 original size:27 final size:27
Alignment explanation
Indices: 7771462--7771513 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
7771452 TTGCTGGGCA
*
7771462 GCACGCGCCACACGCGCCGCACGCGGC
1 GCACGCGCCACACGCGCCACACGCGGC
7771489 GCACGCGCCACACGCGCCACACGCG
1 GCACGCGCCACACGCGCCACACGCG
7771514 CCACCGTATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.17, C:0.52, G:0.31, T:0.00
Consensus pattern (27 bp):
GCACGCGCCACACGCGCCACACGCGGC
Found at i:7772274 original size:14 final size:15
Alignment explanation
Indices: 7772255--7772287 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
7772245 ATTTTAATAA
*
7772255 ATTTTTATT-TTTTT
1 ATTTTTATTATATTT
7772269 ATTTTTATTATATTT
1 ATTTTTATTATATTT
7772284 ATTT
1 ATTT
7772288 ATTTTTACGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (15 bp):
ATTTTTATTATATTT
Found at i:7774889 original size:133 final size:130
Alignment explanation
Indices: 7774752--7775136 Score: 401
Period size: 133 Copynumber: 2.9 Consensus size: 130
7774742 ACTATCAAAA
* *
7774752 TATTTA-AAATATTTAAACAGTTAAATTTTGAAAATTTTAAGAAAAGAGAAATAATAGTTTCTAA
1 TATTTATAAATATTTAAACAGTTAAATTTT-AAAATTTTATGAAAAGATAAATAATAGTTT-TAA
* * *
7774816 AATTTGATGAAATGATAAATAATAATATTTTATCCTTCAAATTAAAACAGTCAAAATATTTTAAA
64 AATTTTATGAAAGGAT-AA-AATAATATTTTATCCTTAAAATTAAAACAGTCAAAATATTTTAAA
7774881 ATAT
127 ATAT
* * * * *
7774885 TATTTATCCTCAATATTTTAACTGTT-AA----AAAATTTTATGAATAGATAAATAATATTTTTT
1 TATTTA---TAAATATTTAAACAGTTAAATTTTAAAATTTTATGAAAAGATAAATAATA-GTTTT
* * * *
7774945 AAAATTTTATTAAAGGAT-AAATAATATTTTATTCTTAAAATTAAAACAATCAAAATA-TTTAAG
62 AAAATTTTATGAAAGGATAAAATAATATTTTATCCTTAAAATTAAAACAGTCAAAATATTTTAAA
7775008 ATAT
127 ATAT
* * * *
7775012 TATTTATCTTTAATATTTAAATAGTTAAAGTTTTAAAATTTTATGAAAGGATAAGTAATATGTTT
1 TATTTA---TAAATATTTAAACAGTTAAA-TTTTAAAATTTTATGAAAAGATAAATAATA-GTTT
* * *
7775077 TAAAATTTTATGAAAGGATAAAA-GATATTTTATCTTTAAAATTAAAATAGTCAAAATATT
61 TAAAATTTTATGAAAGGATAAAATAATATTTTATCCTTAAAATTAAAACAGTCAAAATATT
7775137 CAATTTAAAA
Statistics
Matches: 210, Mismatches: 29, Indels: 25
0.80 0.11 0.09
Matches are distributed among these distances:
127 30 0.14
128 37 0.18
129 1 0.00
131 39 0.19
132 3 0.01
133 81 0.39
134 4 0.02
136 2 0.01
137 13 0.06
ACGTcount: A:0.47, C:0.04, G:0.07, T:0.41
Consensus pattern (130 bp):
TATTTATAAATATTTAAACAGTTAAATTTTAAAATTTTATGAAAAGATAAATAATAGTTTTAAAA
TTTTATGAAAGGATAAAATAATATTTTATCCTTAAAATTAAAACAGTCAAAATATTTTAAAATAT
Found at i:7774950 original size:32 final size:32
Alignment explanation
Indices: 7774913--7774974 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 32
7774903 TAACTGTTAA
7774913 AAAATTTTATGAATA-GATAAATAATATTTTTT
1 AAAATTTTATGAA-AGGATAAATAATATTTTTT
*
7774945 AAAATTTTATTAAAGGATAAATAATATTTT
1 AAAATTTTATGAAAGGATAAATAATATTTT
7774975 ATTCTTAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 1 0.04
32 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (32 bp):
AAAATTTTATGAAAGGATAAATAATATTTTTT
Found at i:7777093 original size:41 final size:41
Alignment explanation
Indices: 7777036--7777118 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
7777026 CATTTTCCCC
*
7777036 TTTAAATTTGTGTAATTCCTTAAGTGTTTGACATGAGAAAT
1 TTTAAATTTGTGTAATTCCATAAGTGTTTGACATGAGAAAT
* *
7777077 TTTAAATTTGTGTAATTTCATAAGTGTTTGATATGAGAAAT
1 TTTAAATTTGTGTAATTCCATAAGTGTTTGACATGAGAAAT
7777118 T
1 T
7777119 ATGCGCCAGG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.33, C:0.05, G:0.17, T:0.46
Consensus pattern (41 bp):
TTTAAATTTGTGTAATTCCATAAGTGTTTGACATGAGAAAT
Found at i:7779604 original size:3 final size:3
Alignment explanation
Indices: 7779596--7779634 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
7779586 CTTTTAACAG
* *
7779596 AGA AGA AGA AGA AGA AGA A-A AAA AGA AAA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
7779635 CAGTCATTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:7781948 original size:21 final size:21
Alignment explanation
Indices: 7781917--7782012 Score: 122
Period size: 21 Copynumber: 4.6 Consensus size: 21
7781907 TAGGGCTTAG
7781917 GATTT-AGATTTAAGATTTAA
1 GATTTAAGATTTAAGATTTAA
7781937 GATTTAAGATTTAAGATTTAA
1 GATTTAAGATTTAAGATTTAA
*
7781958 GATTTAAGATTTAAGGTTTAA
1 GATTTAAGATTTAAGATTTAA
* * * *
7781979 GGTTTAAGACTTAAGACTTAG
1 GATTTAAGATTTAAGATTTAA
**
7782000 GGCTTAAGATTTA
1 GATTTAAGATTTA
7782013 GGGCTCAAAA
Statistics
Matches: 67, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
20 5 0.07
21 62 0.93
ACGTcount: A:0.38, C:0.03, G:0.19, T:0.41
Consensus pattern (21 bp):
GATTTAAGATTTAAGATTTAA
Found at i:7781998 original size:7 final size:7
Alignment explanation
Indices: 7781917--7781994 Score: 122
Period size: 7 Copynumber: 11.3 Consensus size: 7
7781907 TAGGGCTTAG
7781917 GATTT-A
1 GATTTAA
7781923 GATTTAA
1 GATTTAA
7781930 GATTTAA
1 GATTTAA
7781937 GATTTAA
1 GATTTAA
7781944 GATTTAA
1 GATTTAA
7781951 GATTTAA
1 GATTTAA
7781958 GATTTAA
1 GATTTAA
7781965 GATTTAA
1 GATTTAA
*
7781972 GGTTTAA
1 GATTTAA
*
7781979 GGTTTAA
1 GATTTAA
*
7781986 GACTTAA
1 GATTTAA
7781993 GA
1 GA
7781995 CTTAGGGCTT
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
6 5 0.07
7 63 0.93
ACGTcount: A:0.40, C:0.01, G:0.18, T:0.41
Consensus pattern (7 bp):
GATTTAA
Found at i:7782005 original size:14 final size:14
Alignment explanation
Indices: 7781988--7782017 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7781978 AGGTTTAAGA
7781988 CTTAAGACTTAGGG
1 CTTAAGACTTAGGG
*
7782002 CTTAAGATTTAGGG
1 CTTAAGACTTAGGG
7782016 CT
1 CT
7782018 CAAAAGTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (14 bp):
CTTAAGACTTAGGG
Found at i:7782385 original size:32 final size:31
Alignment explanation
Indices: 7782349--7782410 Score: 88
Period size: 32 Copynumber: 2.0 Consensus size: 31
7782339 TTAAAATTTG
*
7782349 AAAATTTTATGAAAAGAGAAATAATAGTTTTT
1 AAAATTTGATGAAAAGAGAAATAATA-TTTTT
* *
7782381 AAAATTTGATGAAAGGATAAATAATATTTT
1 AAAATTTGATGAAAAGAGAAATAATATTTT
7782411 ATCCTTCAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 4 0.15
32 23 0.85
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (31 bp):
AAAATTTGATGAAAAGAGAAATAATATTTTT
Found at i:7782502 original size:31 final size:31
Alignment explanation
Indices: 7782467--7782525 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
7782457 TAACCGTTAA
7782467 AATTTTATGAAAGGATAAATAATATTTTTTG
1 AATTTTATGAAAGGATAAATAATATTTTTTG
*
7782498 AATTTTTTGAAAGGATAAATAATATTTT
1 AATTTTATGAAAGGATAAATAATATTTT
7782526 GACCTTAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (31 bp):
AATTTTATGAAAGGATAAATAATATTTTTTG
Found at i:7782613 original size:101 final size:101
Alignment explanation
Indices: 7782493--7782706 Score: 353
Period size: 101 Copynumber: 2.1 Consensus size: 101
7782483 AAATAATATT
* *
7782493 TTTTGAATTTT-TTGAAAGGATAAATAATATTTTGA-CCTTAAAATTAAAACAATCAAAATATTT
1 TTTTAAATTTTATTGAAAGGATAAATAATATGTT-ATCCTTAAAATTAAAACAATCAAAATATTT
7782556 AAAATATTATTTATCCTTAATATTTAAATAGTTAAAA
65 AAAATATTATTTATCCTTAATATTTAAATAGTTAAAA
*
7782593 TTTTAAAATTTTATTG-AAGGATAAATAATATGTTATCCTTAAAATTAAAACAGTCAAAATATTT
1 TTTT-AAATTTTATTGAAAGGATAAATAATATGTTATCCTTAAAATTAAAACAATCAAAATATTT
*
7782657 AAAATATTATTTATCCTTAATCTTTAAATAGTTAAAA
65 AAAATATTATTTATCCTTAATATTTAAATAGTTAAAA
7782694 TTTTAAATTTTAT
1 TTTTAAATTTTAT
7782707 GGTGTGGTTG
Statistics
Matches: 107, Mismatches: 4, Indels: 6
0.91 0.03 0.05
Matches are distributed among these distances:
100 14 0.13
101 90 0.84
102 3 0.03
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.43
Consensus pattern (101 bp):
TTTTAAATTTTATTGAAAGGATAAATAATATGTTATCCTTAAAATTAAAACAATCAAAATATTTA
AAATATTATTTATCCTTAATATTTAAATAGTTAAAA
Found at i:7782694 original size:42 final size:42
Alignment explanation
Indices: 7782615--7782700 Score: 102
Period size: 42 Copynumber: 2.0 Consensus size: 42
7782605 ATTGAAGGAT
7782615 AAATAATATGTTATCCTTAAAATTAAAACAGTCAAAATATTTA
1 AAATAATATGTTATCCTTAAAATTAAAACAGTCAAAAT-TTTA
* ** * * *
7782658 AAATATTAT-TTATCCTTAATCTTTAAATAGTTAAAATTTTA
1 AAATAATATGTTATCCTTAAAATTAAAACAGTCAAAATTTTA
7782699 AA
1 AA
7782701 TTTTATGGTG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
41 6 0.16
42 23 0.62
43 8 0.22
ACGTcount: A:0.48, C:0.08, G:0.03, T:0.41
Consensus pattern (42 bp):
AAATAATATGTTATCCTTAAAATTAAAACAGTCAAAATTTTA
Found at i:7783064 original size:95 final size:97
Alignment explanation
Indices: 7782877--7783071 Score: 259
Period size: 95 Copynumber: 2.0 Consensus size: 97
7782867 AGCTCTCATA
* * **
7782877 TCATATTCTACCATTAAAACATGATCCCCTGATCTTTATCAGCTGGGAGAGTTGGTGATCATGTT
1 TCATATTCTACCATTAAAACATGATCCCCTGATCTTCACCAGCTGGGAGAGTCAGTGATCATGTT
* *
7782942 GATAGCGATCACTATGGAGTTTATGTACCATC
66 GATAGCGATCACCATGGAGTTTATGTACCAGC
* * * *
7782974 TCATGTTCTACCATTGAACCATGATCCCTTGATC-TCACCAGCTGGGAGAGTCAG-GATCATGTT
1 TCATATTCTACCATTAAAACATGATCCCCTGATCTTCACCAGCTGGGAGAGTCAGTGATCATGTT
* * *
7783037 GATAGTGATGACCATGGAGTTTGTGTACCAGC
66 GATAGCGATCACCATGGAGTTTATGTACCAGC
7783069 TCA
1 TCA
7783072 AAATTTCTTG
Statistics
Matches: 85, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
95 39 0.46
96 16 0.19
97 30 0.35
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.32
Consensus pattern (97 bp):
TCATATTCTACCATTAAAACATGATCCCCTGATCTTCACCAGCTGGGAGAGTCAGTGATCATGTT
GATAGCGATCACCATGGAGTTTATGTACCAGC
Found at i:7787598 original size:21 final size:20
Alignment explanation
Indices: 7787540--7787598 Score: 55
Period size: 21 Copynumber: 2.9 Consensus size: 20
7787530 TAAGATGTAT
* *
7787540 GGTTTAGGTTTAAGGTTTAA
1 GGTTTAGATTTAAGGCTTAA
* * *
7787560 AGTTTAGGACTTAGGGCTTAA
1 GGTTTA-GATTTAAGGCTTAA
7787581 GGTTTACGATTTAAGGCT
1 GGTTTA-GATTTAAGGCT
7787599 CAAAATTTAG
Statistics
Matches: 29, Mismatches: 9, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
20 5 0.17
21 24 0.83
ACGTcount: A:0.25, C:0.07, G:0.29, T:0.39
Consensus pattern (20 bp):
GGTTTAGATTTAAGGCTTAA
Found at i:7799658 original size:23 final size:26
Alignment explanation
Indices: 7799622--7799672 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 26
7799612 ATTATTATTA
*
7799622 AAAAATTAATATTTA-T-AAAAATTT
1 AAAAATTAAAATTTATTAAAAAATTT
7799646 AAAAA-TAAAATTTATTAAAAAATTT
1 AAAAATTAAAATTTATTAAAAAATTT
7799671 AA
1 AA
7799673 TTAGGCAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 8 0.33
24 6 0.25
25 10 0.42
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (26 bp):
AAAAATTAAAATTTATTAAAAAATTT
Found at i:7800759 original size:13 final size:13
Alignment explanation
Indices: 7800743--7800767 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7800733 AATTGAAAAA
7800743 TAAAAATATTTTT
1 TAAAAATATTTTT
7800756 TAAAAATATTTT
1 TAAAAATATTTT
7800768 AAAATTATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TAAAAATATTTTT
Found at i:7801200 original size:16 final size:16
Alignment explanation
Indices: 7801181--7801217 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
7801171 TAATTTTAGT
*
7801181 ATTTTTTATATTTTTA
1 ATTTTTTATATTTTGA
*
7801197 ATTTTTTTTATTTTGA
1 ATTTTTTATATTTTGA
7801213 ATTTT
1 ATTTT
7801218 AAAGAGTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.76
Consensus pattern (16 bp):
ATTTTTTATATTTTGA
Found at i:7813898 original size:27 final size:28
Alignment explanation
Indices: 7813868--7813928 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
7813858 TATTTCTCAG
7813868 TTAATTAAAATAAGA-TAGTTTTCGTAA
1 TTAATTAAAATAAGACTAGTTTTCGTAA
** **
7813895 TTAATT-ATTTTGGACTAGTTTTCGTAA
1 TTAATTAAAATAAGACTAGTTTTCGTAA
7813922 TTAATTA
1 TTAATTA
7813929 TTTTGGACTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
26 4 0.14
27 24 0.86
ACGTcount: A:0.36, C:0.05, G:0.11, T:0.48
Consensus pattern (28 bp):
TTAATTAAAATAAGACTAGTTTTCGTAA
Found at i:7813929 original size:27 final size:27
Alignment explanation
Indices: 7813883--7813937 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
7813873 TAAAATAAGA
7813883 TAGTTTTCGTAATTAATTATTTTGGAC
1 TAGTTTTCGTAATTAATTATTTTGGAC
7813910 TAGTTTTCGTAATTAATTATTTTGGAC
1 TAGTTTTCGTAATTAATTATTTTGGAC
7813937 T
1 T
7813938 TTTGGGACTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.07, G:0.15, T:0.53
Consensus pattern (27 bp):
TAGTTTTCGTAATTAATTATTTTGGAC
Found at i:7814944 original size:22 final size:20
Alignment explanation
Indices: 7814892--7814944 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
7814882 AATGTATTAT
*
7814892 TATAAAATTTTATATATGAA
1 TATAAAATTTTATATATAAA
** *
7814912 TATAACGTTTTTTATATAAA
1 TATAAAATTTTATATATAAA
7814932 TAATTAAAATTTT
1 T-A-TAAAATTTT
7814945 CTGTTTCAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 17 0.68
21 1 0.04
22 7 0.28
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (20 bp):
TATAAAATTTTATATATAAA
Found at i:7815186 original size:17 final size:18
Alignment explanation
Indices: 7815145--7815209 Score: 57
Period size: 17 Copynumber: 3.8 Consensus size: 18
7815135 TCTTATAAAT
7815145 AATAATAAATATATATAA
1 AATAATAAATATATATAA
7815163 AATAATAAA-ATCAT-TAA
1 AATAATAAATAT-ATATAA
* * *
7815180 TATAATAAACA-ATAAAA
1 AATAATAAATATATATAA
*
7815197 AAT-ATAGATATAT
1 AATAATAAATATAT
7815210 GAGGTAAGAT
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
16 7 0.18
17 19 0.50
18 12 0.32
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.31
Consensus pattern (18 bp):
AATAATAAATATATATAA
Found at i:7815767 original size:13 final size:12
Alignment explanation
Indices: 7815749--7815779 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7815739 TTTCCTGGTC
*
7815749 AAAAAAAGGAAA
1 AAAAAAAAGAAA
7815761 AAAAAAAAGAAA
1 AAAAAAAAGAAA
7815773 AAAAAAA
1 AAAAAAA
7815780 CTTCTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (12 bp):
AAAAAAAAGAAA
Found at i:7818832 original size:73 final size:73
Alignment explanation
Indices: 7818714--7818853 Score: 169
Period size: 73 Copynumber: 1.9 Consensus size: 73
7818704 TTGAAAATAA
* * *
7818714 AAATTAAAGTTAAATAAAAGCTGTTTCAGGATTTATTCTTCCCGTTTAACAAATTTTATTCAATT
1 AAATTAAAGTTAAATAAAAGCCGTTTCAGGATTTATTCTCCCCGTTCAACAAATTTTATTCAATT
7818779 TTGTTTCC
66 TTGTTTCC
* ** *
7818787 AAATTAAAAG-TAAATAAAATCCGTTTC-GGTATTTATTC-CCACCGTTCAACGGATTTTATTCT
1 AAATT-AAAGTTAAATAAAAGCCGTTTCAGG-ATTTATTCTCC-CCGTTCAACAAATTTTATTCA
7818849 ATTTT
63 ATTTT
7818854 CTATTTTATT
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
72 3 0.05
73 50 0.88
74 4 0.07
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.42
Consensus pattern (73 bp):
AAATTAAAGTTAAATAAAAGCCGTTTCAGGATTTATTCTCCCCGTTCAACAAATTTTATTCAATT
TTGTTTCC
Found at i:7819073 original size:86 final size:86
Alignment explanation
Indices: 7818787--7819108 Score: 303
Period size: 87 Copynumber: 3.7 Consensus size: 86
7818777 TTTTGTTTCC
* * *
7818787 AAATTAAAAGTAAATAAAATCCGTTTCGGTATTTATTCCCA-CCGTTCAACGGATTTTATTCTAT
1 AAATTAAAATTAAATAAAATCCGTTTCGGGATTTATT-CCAGCCGTTCAAC-GATTTTATTCAAT
* *
7818851 TTTCTATTTTATTTCC-AAACGGG
64 TTT-AATTTTATTTCCAAAACGAG
* * * * * * * *
7818874 GAATTAAAGTTAAATAAAATTCGCTTCGGGTTTTATTCCCGTCGTTCAATAGATTTTATTCCAAT
1 AAATTAAAATTAAATAAAATCCGTTTCGGGATTTATTCCAGCCGTTCAA-CGATTTTATT-CAAT
* *
7818939 TTTGATTTTATTTCCAAAATGAG
64 TTTAATTTTATTTCCAAAACGAG
* * *
7818962 -TATTAAAATTAAAATAAAATCTGTTTCGGGATTTATTCCAGCCGTTCAACGAATTTATT-ACAT
1 AAATTAAAATT-AAATAAAATCCGTTTCGGGATTTATTCCAGCCGTTCAACGATTTTATTCA-AT
* *
7819025 TTTAATTTTGTTGCCAAAACGAG
64 TTTAATTTTATTTCCAAAACGAG
** * *
7819048 AAATTAAAATTAAATAAAATTTGTTTCGAGATTTATTCCTA-CCGTTTAACAAGATTTTATT
1 AAATTAAAATTAAATAAAATCCGTTTCGGGATTTATTCC-AGCCGTTCAAC--GATTTTATT
7819109 TGATTTTATT
Statistics
Matches: 192, Mismatches: 33, Indels: 19
0.79 0.14 0.08
Matches are distributed among these distances:
85 1 0.01
86 57 0.30
87 83 0.43
88 51 0.27
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.41
Consensus pattern (86 bp):
AAATTAAAATTAAATAAAATCCGTTTCGGGATTTATTCCAGCCGTTCAACGATTTTATTCAATTT
TAATTTTATTTCCAAAACGAG
Found at i:7826380 original size:12 final size:12
Alignment explanation
Indices: 7826363--7826388 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7826353 TTGTATATCT
7826363 TTTAGGAATATA
1 TTTAGGAATATA
7826375 TTTAGGAATATA
1 TTTAGGAATATA
7826387 TT
1 TT
7826389 ATATATCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (12 bp):
TTTAGGAATATA
Found at i:7827426 original size:16 final size:17
Alignment explanation
Indices: 7827407--7827441 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7827397 TTGCAACTGA
7827407 AACAATT-TTTATTTTT
1 AACAATTCTTTATTTTT
*
7827423 AACAATTCTTTTTTTTT
1 AACAATTCTTTATTTTT
7827440 AA
1 AA
7827442 ATTTAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (17 bp):
AACAATTCTTTATTTTT
Found at i:7828053 original size:9 final size:9
Alignment explanation
Indices: 7828039--7828113 Score: 50
Period size: 9 Copynumber: 8.1 Consensus size: 9
7828029 TAATTTAGAC
7828039 AATATTTAA
1 AATATTTAA
7828048 AATATTTAA
1 AATATTTAA
*
7828057 TAT-TTTAATA
1 AATATTT-A-A
7828067 AATTATTTATA
1 AA-TATTTA-A
7828078 AATA--TAA
1 AATATTTAA
*
7828085 TAATATATAA
1 -AATATTTAA
7828095 AATATTTGAA
1 AATATTT-AA
7828105 AAT-TTTAA
1 AATATTTAA
7828113 A
1 A
7828114 TATAATAATA
Statistics
Matches: 55, Mismatches: 3, Indels: 17
0.73 0.04 0.23
Matches are distributed among these distances:
7 1 0.02
8 12 0.22
9 21 0.38
10 12 0.22
11 6 0.11
12 3 0.05
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.45
Consensus pattern (9 bp):
AATATTTAA
Found at i:7828143 original size:34 final size:35
Alignment explanation
Indices: 7828065--7828171 Score: 107
Period size: 33 Copynumber: 3.1 Consensus size: 35
7828055 AATATTTTAA
*
7828065 TAAATTATTTATAAATATAATAATATATAAAATATT
1 TAAATAATTT-TAAATATAATAATATATAAAATATT
* ** *
7828101 TGAA-AATTTTAAATATAATAATA-ATTTATTATT
1 TAAATAATTTTAAATATAATAATATATAAAATATT
*
7828134 TAAATAA-TTT-AATATAATAAT-TCATGAAATATT
1 TAAATAATTTTAAATATAATAATAT-ATAAAATATT
7828167 TAAAT
1 TAAAT
7828172 GATATGATAT
Statistics
Matches: 59, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
32 11 0.19
33 25 0.42
34 16 0.27
35 4 0.07
36 3 0.05
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.45
Consensus pattern (35 bp):
TAAATAATTTTAAATATAATAATATATAAAATATT
Done.