Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56482370
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1659275 characters in sequence are not A, C, G, or T
File 28 of 172
Found at i:8820959 original size:3 final size:3
Alignment explanation
Indices: 8820951--8821002 Score: 81
Period size: 3 Copynumber: 17.7 Consensus size: 3
8820941 ACTTTAAGAG
8820951 TAA TAA TAA TAA TAA TAA TAA TAA TAA -AA TAA TAA TGAA TAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA
8820995 TAA TAA TA
1 TAA TAA TA
8821003 CTTGACATGT
Statistics
Matches: 46, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
2 4 0.09
3 39 0.85
4 3 0.07
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:8820981 original size:23 final size:23
Alignment explanation
Indices: 8820955--8821000 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
8820945 TAAGAGTAAT
8820955 AATAATAAT-AATAATAATAATAA
1 AATAATAATGAATAA-AATAATAA
8820978 AATAATAATGAATAAAATAATAA
1 AATAATAATGAATAAAATAATAA
8821001 TACTTGACAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 17 0.77
24 5 0.23
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (23 bp):
AATAATAATGAATAAAATAATAA
Found at i:8821274 original size:23 final size:23
Alignment explanation
Indices: 8821244--8821290 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
8821234 CCTCCTCTTG
8821244 AAATCGTGACTATCTTATGAATA
1 AAATCGTGACTATCTTATGAATA
8821267 AAATCGTGACTATCTTATGAATA
1 AAATCGTGACTATCTTATGAATA
8821290 A
1 A
8821291 TTTCATCACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (23 bp):
AAATCGTGACTATCTTATGAATA
Found at i:8839287 original size:14 final size:14
Alignment explanation
Indices: 8839268--8839295 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8839258 TTGCCTTTAA
8839268 AAATAAGTTAATTC
1 AAATAAGTTAATTC
8839282 AAATAAGTTAATTC
1 AAATAAGTTAATTC
8839296 TTTTTAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (14 bp):
AAATAAGTTAATTC
Found at i:8840201 original size:59 final size:58
Alignment explanation
Indices: 8840053--8840247 Score: 336
Period size: 58 Copynumber: 3.3 Consensus size: 58
8840043 TTAAACATTA
8840053 TTTATAACATTGTCAAATTTATAATTTAAAAAATTATAAAAAATAGAAATAAATTTTT
1 TTTATAACATTGTCAAATTTATAATTTAAAAAATTATAAAAAATAGAAATAAATTTTT
8840111 TTTATAACATTGTCAAATTTATAATTTAAAAAATTATAAAAAATAGAAATAAATTTTT
1 TTTATAACATTGTCAAATTTATAATTTAAAAAATTATAAAAAATAGAAATAAATTTTT
*****
8840169 TTTATAACATTGTCAAATTTATAATTTAAAAAAATTATAAAAAATAGAAATAAAAAAAA
1 TTTATAACATTGTCAAATTTATAATTT-AAAAAATTATAAAAAATAGAAATAAATTTTT
8840228 TTTATAACATTGTCAAATTT
1 TTTATAACATTGTCAAATTT
8840248 TTTTGTTTAT
Statistics
Matches: 131, Mismatches: 5, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
58 85 0.65
59 46 0.35
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.39
Consensus pattern (58 bp):
TTTATAACATTGTCAAATTTATAATTTAAAAAATTATAAAAAATAGAAATAAATTTTT
Found at i:8843590 original size:34 final size:34
Alignment explanation
Indices: 8843530--8843595 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 34
8843520 CAAACACCAG
* *
8843530 AAAATATTTTCCAGTAAGTCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTAC-GAAAAGT
8843565 AAAACATTTTCCAG-AAATCATTTTACGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACGAAAA
8843596 ACATTTTACT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 5 0.17
34 11 0.38
35 13 0.45
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (34 bp):
AAAACATTTTCCAGTAAATCATTTTACGAAAAGT
Found at i:8858534 original size:15 final size:15
Alignment explanation
Indices: 8858492--8858539 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
8858482 TTATAAATGT
8858492 TTATTTGTTTTATT-
1 TTATTTGTTTTATTG
* *
8858506 ATATTT-TTAT-TTG
1 TTATTTGTTTTATTG
8858519 TTATTTGTTTTATTG
1 TTATTTGTTTTATTG
8858534 TTATTT
1 TTATTT
8858540 TCTTTCATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
12 2 0.07
13 8 0.30
14 8 0.30
15 9 0.33
ACGTcount: A:0.17, C:0.00, G:0.08, T:0.75
Consensus pattern (15 bp):
TTATTTGTTTTATTG
Found at i:8858540 original size:27 final size:28
Alignment explanation
Indices: 8858492--8858559 Score: 79
Period size: 27 Copynumber: 2.5 Consensus size: 28
8858482 TTATAAATGT
*
8858492 TTATTTGTTTTATTATATTTTTATTT-G
1 TTATTTGTTTTATTATATTTTTATTTCA
* *
8858519 TTATTTGTTTTATTGT-TATTTTCTTTCA
1 TTATTTGTTTTATTATAT-TTTTATTTCA
8858547 TT-TTTGTTTTATT
1 TTATTTGTTTTATT
8858560 TTTGTTCTCT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.03
27 33 0.92
28 2 0.06
ACGTcount: A:0.15, C:0.03, G:0.07, T:0.75
Consensus pattern (28 bp):
TTATTTGTTTTATTATATTTTTATTTCA
Found at i:8858590 original size:18 final size:19
Alignment explanation
Indices: 8858567--8858606 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
8858557 ATTTTTGTTC
8858567 TCTTTTTACACTTT-TTTT
1 TCTTTTTACACTTTCTTTT
**
8858585 TCTTTTTATTCTTTCTTTT
1 TCTTTTTACACTTTCTTTT
8858604 TCT
1 TCT
8858607 CTCAGTTCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.75
Consensus pattern (19 bp):
TCTTTTTACACTTTCTTTT
Found at i:8860037 original size:92 final size:92
Alignment explanation
Indices: 8859844--8860037 Score: 246
Period size: 92 Copynumber: 2.1 Consensus size: 92
8859834 ACGTCAGCAT
*
8859844 CACTGCGTATCATTGACTAAACTGGCAGTTTTACTGCAACCTAACGGTATAGCGATTTACCGCAT
1 CACTGCGTACCATTGACTAAACTGGCAGTTTTACTGCAACCTAACGGTATAGCGATTTACCGCAT
* *
8859909 TGCGCTATACCGCATGTACGTTAGCTA
66 TGCACTATACCGCATATACGTTAGCTA
** * * * * ** *
8859936 TGCTACGTACCATTGACTGAACTGGTAGTTTTACTGCAATCTATTGGTATAGCGAATTT-TCGCA
1 CACTGCGTACCATTGACTAAACTGGCAGTTTTACTGCAACCTAACGGTATAGCG-ATTTACCGCA
* *
8860000 TTGCATTGTACCGCATATACGTTAGCTA
65 TTGCACTATACCGCATATACGTTAGCTA
8860028 CACTGCGTAC
1 CACTGCGTAC
8860038 TACTATCTGA
Statistics
Matches: 84, Mismatches: 17, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
92 80 0.95
93 4 0.05
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (92 bp):
CACTGCGTACCATTGACTAAACTGGCAGTTTTACTGCAACCTAACGGTATAGCGATTTACCGCAT
TGCACTATACCGCATATACGTTAGCTA
Found at i:8860450 original size:25 final size:25
Alignment explanation
Indices: 8860416--8860501 Score: 109
Period size: 25 Copynumber: 3.4 Consensus size: 25
8860406 TATGCATCAT
8860416 ATTGACTGTTCGACTAAAATGTCTA
1 ATTGACTGTTCGACTAAAATGTCTA
* * * *
8860441 ATTGACTGTTTGATTGAAGTGTCTA
1 ATTGACTGTTCGACTAAAATGTCTA
* * *
8860466 ATTGACTGTTCAACTACAATGTCTG
1 ATTGACTGTTCGACTAAAATGTCTA
8860491 ATTGACTGTTC
1 ATTGACTGTTC
8860502 TACTGAAAGG
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.40
Consensus pattern (25 bp):
ATTGACTGTTCGACTAAAATGTCTA
Found at i:8863348 original size:11 final size:11
Alignment explanation
Indices: 8863332--8863356 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8863322 ATTAGTTAAC
8863332 TATAAAATAAT
1 TATAAAATAAT
8863343 TATAAAATAAT
1 TATAAAATAAT
8863354 TAT
1 TAT
8863357 TTAATTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
TATAAAATAAT
Found at i:8873770 original size:15 final size:15
Alignment explanation
Indices: 8873750--8873801 Score: 61
Period size: 15 Copynumber: 3.4 Consensus size: 15
8873740 AACAGTTAAT
8873750 AATAAAATGATATAA
1 AATAAAATGATATAA
*
8873765 AATAAAATAATA-AA
1 AATAAAATGATATAA
8873779 TAATAAAAATGATATAA
1 -AAT-AAAATGATATAA
*
8873796 TATAAA
1 AATAAA
8873802 TAATGATTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
14 2 0.06
15 17 0.55
16 10 0.32
17 2 0.06
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (15 bp):
AATAAAATGATATAA
Found at i:8873783 original size:30 final size:30
Alignment explanation
Indices: 8873747--8873805 Score: 93
Period size: 31 Copynumber: 2.0 Consensus size: 30
8873737 ATAAACAGTT
8873747 AATAAT-AAAATGATATAAAATAAAATAATA
1 AATAATAAAAATGATATAAAAT-AAATAATA
*
8873777 AATAATAAAAATGATATAATATAAATAAT
1 AATAATAAAAATGATATAAAATAAATAAT
8873806 GATTTACATA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 13 0.48
31 14 0.52
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (30 bp):
AATAATAAAAATGATATAAAATAAATAATA
Found at i:8875741 original size:17 final size:16
Alignment explanation
Indices: 8875719--8875761 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
8875709 ATTTTTCTTT
*
8875719 TAATAAAACAGAAGAAA
1 TAATAAAA-AAAAGAAA
8875736 TAATAATAAAAAAGAAA
1 TAATAA-AAAAAAGAAA
8875753 TAATAAAAA
1 TAATAAAAA
8875762 TAACCATATC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 3 0.12
17 19 0.79
18 2 0.08
ACGTcount: A:0.74, C:0.02, G:0.07, T:0.16
Consensus pattern (16 bp):
TAATAAAAAAAAGAAA
Found at i:8875763 original size:20 final size:20
Alignment explanation
Indices: 8875720--8875764 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
8875710 TTTTTCTTTT
* *
8875720 AATAAAACAGAAGAAATAAT
1 AATAAAAAAGAAGAAATAAA
8875740 AATAAAAAAGAA-ATAATAAA
1 AATAAAAAAGAAGA-AATAAA
8875760 AATAA
1 AATAA
8875765 CCATATCACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 1 0.05
20 21 0.95
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.16
Consensus pattern (20 bp):
AATAAAAAAGAAGAAATAAA
Found at i:8880980 original size:78 final size:79
Alignment explanation
Indices: 8880753--8881074 Score: 278
Period size: 78 Copynumber: 4.0 Consensus size: 79
8880743 TATTTTCTTT
* * *
8880753 CTCATTTTTGGCAATAAAATCAAAA--TGCAAT-AAATCCATTGAACGGCGGGAATCAATCCCGA
1 CTCATTTTTGGAAATAAAA-CAAAATTTGGAATAAAAT-CATTAAACGGCGGGAATCAATCCCGA
* *
8880815 CACGGATTCTATTTTA
64 AACGGATTTTATTTTA
* * * ** *
8880831 CTCATTTTTGGAAATAAAACAAAATTTTGAATAAAATCATTGAATGGCAAGAATCAATCTCGAAA
1 CTCATTTTTGGAAATAAAACAAAATTTGGAATAAAATCATTAAACGGCGGGAATCAATCCCGAAA
8880896 CGGATTTTATTTTA
66 CGGATTTTATTTTA
* **
8880910 CTCATTTTTGGAAAT-AAATAAAATTTGGAATAAAATTGTTAAACGGCGGGAATCAATCCCGAAA
1 CTCATTTTTGGAAATAAAACAAAATTTGGAATAAAATCATTAAACGGCGGGAATCAATCCCGAAA
**
8880974 AAGATTTTA-TTTA
66 CGGATTTTATTTTA
* * *
8880987 CCTTTAATTTCCCATTTGGAAATAAAATC-AAATTAATGGAATAAAATCCATTGAACGACGGGAA
1 -C--TCA-TT----TTTGGAAATAAAA-CAAAATT--TGGAATAAAAT-CATTAAACGGCGGGAA
* * *
8881051 TAAATTCTGAAACGGATTTTATTT
54 TCAATCCCGAAACGGATTTTATTT
8881075 ACTTTTAATT
Statistics
Matches: 196, Mismatches: 31, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
77 9 0.05
78 66 0.34
79 55 0.28
80 6 0.03
81 2 0.01
85 9 0.05
86 8 0.04
88 11 0.06
89 28 0.14
90 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (79 bp):
CTCATTTTTGGAAATAAAACAAAATTTGGAATAAAATCATTAAACGGCGGGAATCAATCCCGAAA
CGGATTTTATTTTA
Found at i:8881069 original size:89 final size:85
Alignment explanation
Indices: 8880916--8881085 Score: 205
Period size: 89 Copynumber: 2.0 Consensus size: 85
8880906 TTTACTCATT
** * *
8880916 TTTGGAAATAAATAAAATTTGGAATAAAATTGTTAAACGGCGGGAATCAATCCCGAAAAAGATTT
1 TTTGGAAATAAATAAAATTTGGAATAAAATCATTAAACGACGGGAATAAATCCCGAAAAAGATTT
8880981 TATTTACCTTTAATTTCCCA
66 TATTTACCTTTAATTTCCCA
* * * * **
8881001 TTTGGAAATAAAATCAAATTAATGGAATAAAATCCATTGAACGACGGGAATAAATTCTGAAACGG
1 TTTGGAAAT-AAATAAAATT--TGGAATAAAAT-CATTAAACGACGGGAATAAATCCCGAAAAAG
*
8881066 ATTTTATTTACTTTTAATTT
62 ATTTTATTTACCTTTAATTT
8881086 GGAAACAAAA
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
85 9 0.13
86 9 0.13
88 11 0.16
89 41 0.59
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.34
Consensus pattern (85 bp):
TTTGGAAATAAATAAAATTTGGAATAAAATCATTAAACGACGGGAATAAATCCCGAAAAAGATTT
TATTTACCTTTAATTTCCCA
Found at i:8882142 original size:260 final size:261
Alignment explanation
Indices: 8881681--8882253 Score: 967
Period size: 260 Copynumber: 2.2 Consensus size: 261
8881671 CCTTTTTCTA
8881681 TCATAGGAATGTTTGAAAATACGAAGAGGAAAAGGGAGACTTTTGAAAGTAGAAGAGTTTCGGTA
1 TCATAGGAATGTTTGAAAATACGAAGAGGAAAAGGGAGACTTTTGAAAGTAGAAGAGTTTCGGTA
8881746 AGAGGAAAAAATTCAAAGATTATTTAGTGTGTAAAAACCCTTTAGAAATCATGGCCTTTTAGAGG
66 AGAGGAAAAAATTCAAAGATTATTTAGTGTGTAAAAACCCTTTAGAAATCATGGCCTTTTAGAGG
*
8881811 CATGGAGATTGTTGGAATTTTGGAAAAATTATCCACAAAATCTACGATTAAATCAATTTGATTAA
131 CATGGAGATTGTTGGAATTTTGGAAAAATTATCCACAAAATCTACCATTAAATCAATTTGATTAA
8881876 AAAAATTAATCAAATTTATTAGAATCAAATCAATAAGATAAGTATCCTTATATAAGCAGATTATG
196 AAAAATTAATCAAATTTATTAGAATCAAATCAATAAGATAAGTATCCTTATATAAGCAGATTATG
8881941 -
261 C
*
8881941 TCATAGGAATGTTTGAAAATACGAAGAGGAAAAGGGAGACTTTTGAAAGTAGCAGAGTTTCGGTA
1 TCATAGGAATGTTTGAAAATACGAAGAGGAAAAGGGAGACTTTTGAAAGTAGAAGAGTTTCGGTA
* * *
8882006 AGAGGAAAAAA-TCAAAGATTATTTTGTGTGTAAAAACCCTTTAGAAATTATGGCCTTTTATAGG
66 AGAGGAAAAAATTCAAAGATTATTTAGTGTGTAAAAACCCTTTAGAAATCATGGCCTTTTAGAGG
* * *
8882070 CATGGAGATTGTTGGAATTTTGGAAAACTTATCTACAAAATCTGCCATTAAATCAATTTGATTAA
131 CATGGAGATTGTTGGAATTTTGGAAAAATTATCCACAAAATCTACCATTAAATCAATTTGATT-A
*
8882135 AAAAAATTAATTAAATTTATTAGAATCAAATCAATAAGATAAGTATCCTTATATAAGCAGATTAT
195 AAAAAATTAATCAAATTTATTAGAATCAAATCAATAAGATAAGTATCCTTATATAAGCAGATTAT
8882200 GTC
260 G-C
* ** *
8882203 TGCAGAGGAA--AAT-AAATTACGAAGAGGAAAAGGGAGACTTTTGAAAGTAGA
1 T-CATAGGAATGTTTGAAAATACGAAGAGGAAAAGGGAGACTTTTGAAAGTAGA
8882254 TCAAATCAAT
Statistics
Matches: 295, Mismatches: 14, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
259 109 0.37
260 177 0.60
261 1 0.00
262 1 0.00
263 7 0.02
ACGTcount: A:0.42, C:0.09, G:0.19, T:0.30
Consensus pattern (261 bp):
TCATAGGAATGTTTGAAAATACGAAGAGGAAAAGGGAGACTTTTGAAAGTAGAAGAGTTTCGGTA
AGAGGAAAAAATTCAAAGATTATTTAGTGTGTAAAAACCCTTTAGAAATCATGGCCTTTTAGAGG
CATGGAGATTGTTGGAATTTTGGAAAAATTATCCACAAAATCTACCATTAAATCAATTTGATTAA
AAAAATTAATCAAATTTATTAGAATCAAATCAATAAGATAAGTATCCTTATATAAGCAGATTATG
C
Found at i:8883042 original size:22 final size:22
Alignment explanation
Indices: 8883014--8883060 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
8883004 AGAAATGTTC
8883014 TTAGTAATTTATTTTGACAAGG
1 TTAGTAATTTATTTTGACAAGG
8883036 TTAGTAATTTATTTTGACAAGG
1 TTAGTAATTTATTTTGACAAGG
8883058 TTA
1 TTA
8883061 AATAAATGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.32, C:0.04, G:0.17, T:0.47
Consensus pattern (22 bp):
TTAGTAATTTATTTTGACAAGG
Found at i:8885059 original size:17 final size:17
Alignment explanation
Indices: 8885015--8885060 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 17
8885005 GTATTATTAT
8885015 TATTATTTA-AAAT-T-
1 TATTATTTATAAATGTA
8885029 TATTATTTAT---TGTA
1 TATTATTTATAAATGTA
8885043 TATTATTTATAAATGTA
1 TATTATTTATAAATGTA
8885060 T
1 T
8885061 GATTTTCGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 9
0.74 0.00 0.26
Matches are distributed among these distances:
12 1 0.04
13 1 0.04
14 19 0.73
17 5 0.19
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (17 bp):
TATTATTTATAAATGTA
Found at i:8885966 original size:15 final size:15
Alignment explanation
Indices: 8885948--8885982 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
8885938 AAACCCCGAA
8885948 AACCCGAAAATAAAG
1 AACCCGAAAATAAAG
8885963 AACCCGAAAATAAAG
1 AACCCGAAAATAAAG
8885978 AACCC
1 AACCC
8885983 TCAAAACGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.57, C:0.26, G:0.11, T:0.06
Consensus pattern (15 bp):
AACCCGAAAATAAAG
Found at i:8889424 original size:13 final size:14
Alignment explanation
Indices: 8889400--8889428 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
8889390 ACATGGGCAT
8889400 GTAGGCCCACATGG
1 GTAGGCCCACATGG
8889414 GTAGG-CCACATGG
1 GTAGGCCCACATGG
8889427 GT
1 GT
8889429 GTGTGAGCCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.21, C:0.24, G:0.38, T:0.17
Consensus pattern (14 bp):
GTAGGCCCACATGG
Found at i:8889706 original size:27 final size:32
Alignment explanation
Indices: 8889634--8889707 Score: 130
Period size: 32 Copynumber: 2.3 Consensus size: 32
8889624 GCCATATTTG
*
8889634 TATGATACATTGCATCGGAGTGGGGTTGGTGT
1 TATGATGCATTGCATCGGAGTGGGGTTGGTGT
*
8889666 TATGATGCATTGCATCGGGGTGGGGTTGGTGT
1 TATGATGCATTGCATCGGAGTGGGGTTGGTGT
8889698 TATGATGCAT
1 TATGATGCAT
8889708 GACGTATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.18, C:0.09, G:0.38, T:0.35
Consensus pattern (32 bp):
TATGATGCATTGCATCGGAGTGGGGTTGGTGT
Found at i:8892470 original size:144 final size:142
Alignment explanation
Indices: 8892288--8892740 Score: 526
Period size: 144 Copynumber: 3.2 Consensus size: 142
8892278 ATCTATTAAC
* * *
8892288 TGGTTCAATTCCTTCTTGTCTTGGTAAGTTGTCTAAATTGCATACCTTAAGACTTGATTCAAATC
1 TGGTTCAATCCCTTCTTGTATTGGTAA-TTGTCCAAATTGCATACCTTAA-ACTTGATTCAAATC
** * *
8892353 TATTAGAAGGTCCTATTCCTGAAGAAATTTGTGACTTAGCAAATTTAACTTCATT-AAGCCTCTA
64 TATTAGAAGGTCCTATTCCCCAAGAAATTTGTAATTTAGCAAATTTAACTTCATTGAA-CCTCTA
8892417 CCAAAACAAATTGAA
128 CCAAAACAAATTGAA
* * *
8892432 TGGTTCAATCCCTTCTTGTCTTGGTACATTGTCCAAATTGGATACCTTACAACTTCATTCAAATC
1 TGGTTCAATCCCTTCTTGTATTGGTA-ATTGTCCAAATTGCATACCTTA-AACTTGATTCAAATC
* * *
8892497 TATTAGAAGGTCCTATTCCCCAA-AAATTTTGTAATTTCGCAAATTTAACTTCATTGTACCTCTT
64 TATTAGAAGGTCCTATTCCCCAAGAAA-TTTGTAATTTAGCAAATTTAACTTCATTGAACCTCTA
*
8892561 CCAAAACAAATTGAG
128 CCAAAACAAATTGAA
* * * * * *
8892576 TGGTTCAATCCCTTCTTGTATTGGTAGTT-TATCAAAGATGCAGTA-C-T--CCTTGGTTCTAAT
1 TGGTTCAATCCCTTCTTGTATTGGTAATTGT-CCAAA-TTGCA-TACCTTAAACTTGATTCAAAT
* * * *
8892636 CTATTAAAAGGTCCTATTCCCCAAGAAATTTGTAATTTAGAAAATTTAACCGT-ATTGAATCTCT
63 CTATTAGAAGGTCCTATTCCCCAAGAAATTTGTAATTTAGCAAATTTAA-CTTCATTGAACCTCT
*
8892700 CCCAAAACAAATTGAA
127 ACCAAAACAAATTGAA
*
8892716 TGGTTTAATCCCTTCTTGTATTGGT
1 TGGTTCAATCCCTTCTTGTATTGGT
8892741 CGTTTATCAA
Statistics
Matches: 270, Mismatches: 30, Indels: 22
0.84 0.09 0.07
Matches are distributed among these distances:
140 98 0.36
141 5 0.02
142 1 0.00
143 10 0.04
144 151 0.56
145 5 0.02
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.37
Consensus pattern (142 bp):
TGGTTCAATCCCTTCTTGTATTGGTAATTGTCCAAATTGCATACCTTAAACTTGATTCAAATCTA
TTAGAAGGTCCTATTCCCCAAGAAATTTGTAATTTAGCAAATTTAACTTCATTGAACCTCTACCA
AAACAAATTGAA
Found at i:8892705 original size:140 final size:140
Alignment explanation
Indices: 8892340--8892809 Score: 507
Period size: 144 Copynumber: 3.3 Consensus size: 140
8892330 TACCTTAAGA
* ** * *
8892340 CTTGATTCAAATCTATTAGAAGGTCCTATTCCTGAAGAAATTTGTGACTTAGCAAATTTAACTTC
1 CTTGATTCAAATCTATTAAAAGGTCCTATTCCCCAAGAAATTTGTAATTTAGCAAATTTAACTTC
* ** *
8892405 ATT-AAGCCTCTACCAAAACAAATTGAATGGTTCAATCCCTTCTTGTCTTGGTACATTGTCCAAA
66 ATTGAA-CCTCTACCAAAACAAATTGAATGGTTCAATCCCTTCTTGTATTGGTAGTTTAT-CAAA
* ** **
8892469 TTGGATACCTTACAA
129 ---GATGCAGTACTC
* * *
8892484 CTTCATTCAAATCTATTAGAAGGTCCTATTCCCCAA-AAATTTTGTAATTTCGCAAATTTAACTT
1 CTTGATTCAAATCTATTAAAAGGTCCTATTCCCCAAGAAA-TTTGTAATTTAGCAAATTTAACTT
* * *
8892548 CATTGTACCTCTTCCAAAACAAATTGAGTGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAG
65 CATTGAACCTCTACCAAAACAAATTGAATGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAG
8892613 ATGCAGTACTC
130 ATGCAGTACTC
* * * *
8892624 CTTGGTTCTAATCTATTAAAAGGTCCTATTCCCCAAGAAATTTGTAATTTAGAAAATTTAACCGT
1 CTTGATTCAAATCTATTAAAAGGTCCTATTCCCCAAGAAATTTGTAATTTAGCAAATTTAA-CTT
* * * *
8892689 -ATTGAATCTCTCCCAAAACAAATTGAATGGTTTAATCCCTTCTTGTATTGGTCGTTTATCAAAG
65 CATTGAACCTCTACCAAAACAAATTGAATGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAG
**
8892753 ATGTGGTACTTAAGC
130 ATGCAGTAC-T---C
* * *
8892768 CTTGGTTCTAATCTATTAAAAGGTCCTA-TCCCAAAAGAAATT
1 CTTGATTCAAATCTATTAAAAGGTCCTATTCCC-CAAGAAATT
8892810 GGCAAGCTTT
Statistics
Matches: 283, Mismatches: 34, Indels: 18
0.84 0.10 0.05
Matches are distributed among these distances:
140 123 0.43
141 6 0.02
143 11 0.04
144 142 0.50
145 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (140 bp):
CTTGATTCAAATCTATTAAAAGGTCCTATTCCCCAAGAAATTTGTAATTTAGCAAATTTAACTTC
ATTGAACCTCTACCAAAACAAATTGAATGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAGA
TGCAGTACTC
Found at i:8901969 original size:66 final size:69
Alignment explanation
Indices: 8901862--8902008 Score: 194
Period size: 66 Copynumber: 2.2 Consensus size: 69
8901852 CAGGGTTTAG
* * *
8901862 TAGCACCACGAGATTGTAAATTATATTTCTTAAAGTAGCACCACTTCTG-TTT-TTTTCTTTTTA
1 TAGCACCACTAGATTGTAAATTATATTTCATAAAGTAGCACCACTACTGTTTTCTTTTCTTTTTA
8901925 AAAT
66 AAAT
*
8901929 TAGCACCACTAGA-TGTAAATTAT-TCTTGATAAAGTAGCACCACTACTGTTTTTCTTTTCTTTT
1 TAGCACCACTAGATTGTAAATTATAT-TTCATAAAGTAGCACCACTACTG-TTTTCTTTTCTTTT
8901992 TAAAAT
64 TAAAAT
* *
8901998 TACCATCACTA
1 TAGCACCACTA
8902009 CACGTGAAAA
Statistics
Matches: 70, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
65 1 0.01
66 30 0.43
67 12 0.17
68 3 0.04
69 24 0.34
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.41
Consensus pattern (69 bp):
TAGCACCACTAGATTGTAAATTATATTTCATAAAGTAGCACCACTACTGTTTTCTTTTCTTTTTA
AAAT
Found at i:8901989 original size:34 final size:33
Alignment explanation
Indices: 8901892--8901989 Score: 83
Period size: 34 Copynumber: 2.9 Consensus size: 33
8901882 TTATATTTCT
* *
8901892 TAAAGTAGCACCACTTCTGTTTTTTTCTT-TTTA
1 TAAAGTAGCACCACTACTGTTTTTTT-TTCTTGA
* * *** *
8901925 -AAATTAGCACCACTAGATGTAAATTATTCTTGA
1 TAAAGTAGCACCACTA-CTGTTTTTTTTTCTTGA
8901958 TAAAGTAGCACCACTACTGTTTTTCTTTTCTT
1 TAAAGTAGCACCACTACTGTTTTT-TTTTCTT
8901990 TTTAAAATTA
Statistics
Matches: 47, Mismatches: 14, Indels: 7
0.69 0.21 0.10
Matches are distributed among these distances:
32 15 0.32
33 12 0.26
34 20 0.43
ACGTcount: A:0.28, C:0.18, G:0.10, T:0.44
Consensus pattern (33 bp):
TAAAGTAGCACCACTACTGTTTTTTTTTCTTGA
Found at i:8903827 original size:5 final size:5
Alignment explanation
Indices: 8903817--8903843 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
8903807 AACTTATCAA
8903817 TATAT TATAT TATAT TATAT TATAT TA
1 TATAT TATAT TATAT TATAT TATAT TA
8903844 ACTGCAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:8905467 original size:42 final size:42
Alignment explanation
Indices: 8905420--8905501 Score: 146
Period size: 42 Copynumber: 2.0 Consensus size: 42
8905410 TTAAAAAACT
*
8905420 CAAACCTCAACATAAATAATAGGATGTCCAGTTTACCAGACC
1 CAAACCTCAACATAAATAATAGGATGTCCAGTTCACCAGACC
*
8905462 CAAACCTCAACGTAAATAATAGGATGTCCAGTTCACCAGA
1 CAAACCTCAACATAAATAATAGGATGTCCAGTTCACCAGA
8905502 AGAAAACCAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.40, C:0.26, G:0.13, T:0.21
Consensus pattern (42 bp):
CAAACCTCAACATAAATAATAGGATGTCCAGTTCACCAGACC
Found at i:8906106 original size:25 final size:27
Alignment explanation
Indices: 8906069--8906121 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
8906059 TCAAACATGC
8906069 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
8906095 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
8906121 A
1 A
8906122 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:8907077 original size:56 final size:56
Alignment explanation
Indices: 8906991--8907101 Score: 213
Period size: 56 Copynumber: 2.0 Consensus size: 56
8906981 ACCTTCTAAC
8906991 TCATCTCTCACAATTTATGGTGATTTTCCAAAGTCACATTACTGCTGCTGTCCCAT
1 TCATCTCTCACAATTTATGGTGATTTTCCAAAGTCACATTACTGCTGCTGTCCCAT
*
8907047 TCATCTCTCATAATTTATGGTGATTTTCCAAAGTCACATTACTGCTGCTGTCCCA
1 TCATCTCTCACAATTTATGGTGATTTTCCAAAGTCACATTACTGCTGCTGTCCCA
8907102 AGCAGATTTA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.38
Consensus pattern (56 bp):
TCATCTCTCACAATTTATGGTGATTTTCCAAAGTCACATTACTGCTGCTGTCCCAT
Found at i:8907690 original size:26 final size:26
Alignment explanation
Indices: 8907660--8907741 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
8907650 TGAAATGCCC
8907660 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
8907686 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
8907712 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
8907738 ATCA
1 ATCA
8907742 ATTTGTATCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:8908857 original size:17 final size:17
Alignment explanation
Indices: 8908835--8908869 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
8908825 TATTCTACTT
*
8908835 TAATTTTATTATTGTTA
1 TAATTTTATTATTATTA
8908852 TAATTTTATTATTATTA
1 TAATTTTATTATTATTA
8908869 T
1 T
8908870 TATCATCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (17 bp):
TAATTTTATTATTATTA
Found at i:8908863 original size:3 final size:3
Alignment explanation
Indices: 8908840--8908890 Score: 50
Period size: 3 Copynumber: 17.0 Consensus size: 3
8908830 TACTTTAATT
* * * *
8908840 TTA TTA TTG TTA TAA TT- TTA TTA TTA TTA TTA TCA TCA TTA TTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
8908888 TTA
1 TTA
8908891 GTGTATAGTT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
2 2 0.05
3 35 0.88
4 3 0.08
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:8909187 original size:15 final size:15
Alignment explanation
Indices: 8909168--8909203 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
8909158 ATTATCTCTA
8909168 ATATATGTATATATT
1 ATATATGTATATATT
* *
8909183 GTATATGTTTATATT
1 ATATATGTATATATT
8909198 ATATAT
1 ATATAT
8909204 ATATTATTTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (15 bp):
ATATATGTATATATT
Found at i:8909509 original size:20 final size:21
Alignment explanation
Indices: 8909464--8909509 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
8909454 TTACCAATGT
*
8909464 TAGTACATATATTTTATTATA
1 TAGTATATATATTTTATTATA
*
8909485 -CGTATATATATTTT-TTATA
1 TAGTATATATATTTTATTATA
8909504 TAGTAT
1 TAGTAT
8909510 TATTTTCATT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.35, C:0.04, G:0.07, T:0.54
Consensus pattern (21 bp):
TAGTATATATATTTTATTATA
Found at i:8920856 original size:40 final size:40
Alignment explanation
Indices: 8920800--8920876 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
8920790 ATATTATGCT
8920800 TAAAAAAATAAAATCAAGATGAAAACCTG-AAAGGGCATC
1 TAAAAAAATAAAATCAAGATGAAAACCTGAAAAGGGCATC
*
8920839 TAAAAAAA-AAGAGATCAAGGTGAAAACCTGAAAAGGGC
1 TAAAAAAATAA-A-ATCAAGATGAAAACCTGAAAAGGGC
8920877 GTCTTGATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 2 0.06
39 9 0.26
40 16 0.47
41 7 0.21
ACGTcount: A:0.56, C:0.12, G:0.19, T:0.13
Consensus pattern (40 bp):
TAAAAAAATAAAATCAAGATGAAAACCTGAAAAGGGCATC
Found at i:8921777 original size:14 final size:15
Alignment explanation
Indices: 8921758--8921790 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8921748 CGCTGAGGTA
*
8921758 TTTTC-AATTTCTGT
1 TTTTCAAATGTCTGT
8921772 TTTTCAAATGTCTGT
1 TTTTCAAATGTCTGT
8921787 TTTT
1 TTTT
8921791 AATCAAATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.15, C:0.12, G:0.09, T:0.64
Consensus pattern (15 bp):
TTTTCAAATGTCTGT
Found at i:8921949 original size:13 final size:13
Alignment explanation
Indices: 8921931--8921961 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
8921921 CTCTGAGGTA
8921931 TTTTCAATTTCTG
1 TTTTCAATTTCTG
8921944 TTTTCAATTTCTG
1 TTTTCAATTTCTG
8921957 TTTTC
1 TTTTC
8921962 CAAAATCAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.13, C:0.16, G:0.06, T:0.65
Consensus pattern (13 bp):
TTTTCAATTTCTG
Found at i:8921980 original size:85 final size:85
Alignment explanation
Indices: 8921691--8922209 Score: 495
Period size: 86 Copynumber: 6.0 Consensus size: 85
8921681 TTTGATGTTT
*
8921691 AATTTCTGTTTTCAGAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGTAC-GCTGAG
1 AATTTCTGTTTTCA-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC--GGCACTGCTGAG
8921755 GTATTTTCAATTTCTGTTTTTCA
63 GTATTTTCAATTTCTGTTTTTCA
* * *
8921778 AATGTCTGTTTT--TAATCAAATCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAG
1 AATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--CAC-TGCTGAG
*
8921841 GTATTTTCAGTTTCTGTTTTTCA
63 GTATTTTCAATTTCTGTTTTTCA
* * * *
8921864 AATTTTTATTTTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCTTCAGGACACT-CTGAG
1 AATTTCT-GTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-CACTGCTGAG
8921928 GTATTTTCAATTTCTG-TTTTC-
63 GTATTTTCAATTTCTGTTTTTCA
*
8921949 AATTTCTGTTTTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GCA-TGCTGAGGA
1 AATTTCTGTTTT-CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACTGCTGAGGT
8922012 ATTTTCAATTTCTGTTTTTTTC-
65 ATTTTCAATTTCTG--TTTTTCA
* * * * * *
8922034 AATTTGTACTTTTCAAAAATTAACTCATATTGCGAGAGATGAGTTGATCCTCGAGTCACATGCCG
1 AATTTCT-GTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG-G-CAC-TGCTG
** ** *
8922099 AGGTATTTTCAAAATCTACTTTCCA
61 AGGTATTTTCAATTTCTGTTTTTCA
** * * *
8922124 AA-TTAAG-TTTCAAAAAGACCAACTCATATTGCGAGAGGTGAGTTGAGTCTTGGCTCAGCT-CT
1 AATTTCTGTTTTC--AAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--CA-CTGCT
* *
8922186 GAGCTATTATCAATTTCTGTTTTT
60 GAGGTATTTTCAATTTCTGTTTTT
8922210 TAGTTTATGT
Statistics
Matches: 359, Mismatches: 48, Indels: 49
0.79 0.11 0.11
Matches are distributed among these distances:
81 1 0.00
82 24 0.07
83 1 0.00
84 40 0.11
85 54 0.15
86 76 0.21
87 39 0.11
88 25 0.07
89 76 0.21
90 5 0.01
91 18 0.05
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (85 bp):
AATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACTGCTGAGGTA
TTTTCAATTTCTGTTTTTCA
Found at i:8922108 original size:173 final size:172
Alignment explanation
Indices: 8921699--8922170 Score: 516
Period size: 173 Copynumber: 2.7 Consensus size: 172
8921689 TTAATTTCTG
* *
8921699 TTTTCAGAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGTAC--GCTGAGGTATTTT
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GAGTACATGCTGAGGTATTTT
* * *
8921762 CAATTTCTGTTTTTCAAATGTCTGTTTT--TAATCAAATCATATTGCGAGAGGTGAGTTGAGCCT
65 CAATTTCTG-TTTTC-AATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* * * *
8921825 CGGCTCACATGCTGAGGTATTTTCAGTTTCTGTTTTTCAAATTTTTAT
128 CGG--C-CATGCTGAGGAATTTTCAATTTCTGTTTTTCAAATTTGTAC
* * *
8921873 TTTTC-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCTTC-AGGACACT-CTGAGGTATTTT
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTACA-TGCTGAGGTATTTT
8921935 CAATTTCTGTTTTCAATTTCTGTTTTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
65 CAATTTCTGTTTTCAATTTCTGTTTT-CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
8922000 -G-CATGCTGAGGAATTTTCAATTTCTGTTTTTTTC-AATTTGTAC
129 GGCCATGCTGAGGAATTTTCAATTTCTG--TTTTTCAAATTTGTAC
* * * *
8922043 TTTTCAAAAATTAACTCATATTGCGAGAGATGAGTTGATCCTCGAGTCACATGCCGAGGTATTTT
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGT-ACATGCTGAGGTATTTT
** * * * ** *
8922108 CAAAATCTACTTTCCAAATTAAG-TTTCAAAAAGACCAACTCATATTGCGAGAGGTGAGTTGAG
65 CAATTTCT-GTTTTCAATTTCTGTTTTC--AAA-ATCAACTCATATTGCGAGAGGTGAGTTGAG
8922171 TCTTGGCTCA
Statistics
Matches: 255, Mismatches: 27, Indels: 31
0.81 0.09 0.10
Matches are distributed among these distances:
169 23 0.09
170 12 0.05
171 52 0.20
172 9 0.04
173 79 0.31
174 51 0.20
175 29 0.11
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (172 bp):
TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTACATGCTGAGGTATTTTC
AATTTCTGTTTTCAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
CCATGCTGAGGAATTTTCAATTTCTGTTTTTCAAATTTGTAC
Found at i:8922150 original size:260 final size:255
Alignment explanation
Indices: 8921691--8922208 Score: 611
Period size: 260 Copynumber: 2.0 Consensus size: 255
8921681 TTTGATGTTT
*
8921691 AATTTCTGTTTTCAGAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGTACGCTGAGG
1 AATTTCTGTTTTCAGAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC--GGCACGCTGAGG
* ** *
8921756 TATTTTCAATTTCTGTTTTTCAAATGTCTGTTTTTAATCAAATCATATTGCGAGAGGTGAGTTGA
64 AATTTTCAATTTCTGTTTTTCAAATGTCTGTTTAAAATCAAATCATATTGCGAGAGATGAGTTGA
* *** ** * ** *
8921821 GCCTCGGCTCACATGCTGAGGTATTTTCAGTTTCTGTTTTTCAAATTTTTATTTTTCAAAATCAA
129 GCCTCGGCTCACATGCCGAGGTATTTTCAAAATCTACTTTCCAAA--TTTAAGTTTCAAAACCAA
* *
8921886 CTCATATTGCAAGAGGTGAGTTGAG-CTTCAGG-ACA-CTCTGAGGTATTTTCAATTTCTGTTTT
192 CTCATATTGCAAGAGGTGAGTTGAGTCTT--GGCACAGCTCTGAGCTATTATCAATTTCTGTTTT
8921948 C
255 C
*
8921949 AATTTCTGTTTTCCA-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GCATGCTGAGGA
1 AATTTCTGTTTT-CAGAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACGCTGAGGA
* * *
8922012 ATTTTCAATTTCTGTTTTTTTCAATTTGTACT-TTTCAAAAATTAACTCATATTGCGAGAGATGA
65 ATTTTCAATTTCTG--TTTTTCAA-ATGT-CTGTTT--AAAATCAAATCATATTGCGAGAGATGA
*
8922076 GTTGATCCTCGAG-TCACATGCCGAGGTATTTTCAAAATCTACTTTCCAAA-TTAAGTTTCAAAA
124 GTTGAGCCTCG-GCTCACATGCCGAGGTATTTTCAAAATCTACTTTCCAAATTTAAGTTTC--AA
* *
8922139 AGACCAACTCATATTGCGAGAGGTGAGTTGAGTCTTGGCTCAGCTCTGAGCTATTATCAATTTCT
186 A-ACCAACTCATATTGCAAGAGGTGAGTTGAGTCTTGGCACAGCTCTGAGCTATTATCAATTTCT
8922204 GTTTT
250 GTTTT
8922209 TTAGTTTATG
Statistics
Matches: 222, Mismatches: 24, Indels: 25
0.82 0.09 0.09
Matches are distributed among these distances:
255 23 0.10
257 15 0.07
258 54 0.24
259 9 0.04
260 92 0.41
261 29 0.13
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (255 bp):
AATTTCTGTTTTCAGAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACGCTGAGGAA
TTTTCAATTTCTGTTTTTCAAATGTCTGTTTAAAATCAAATCATATTGCGAGAGATGAGTTGAGC
CTCGGCTCACATGCCGAGGTATTTTCAAAATCTACTTTCCAAATTTAAGTTTCAAAACCAACTCA
TATTGCAAGAGGTGAGTTGAGTCTTGGCACAGCTCTGAGCTATTATCAATTTCTGTTTTC
Found at i:8922391 original size:44 final size:44
Alignment explanation
Indices: 8922323--8922421 Score: 135
Period size: 44 Copynumber: 2.2 Consensus size: 44
8922313 AGATTTGGCC
** * *
8922323 TCCCTGAAGTCGCAGTAGAGTAGGTCAAAGTTACAAGTCTTGTA
1 TCCCTGAAGTTACAATAGAATAGGTCAAAGTTACAAGTCTTGTA
* * *
8922367 TCCCTGAAGTTACAATAGAATAGGTTAAAGTTGCAAGTCTTGTC
1 TCCCTGAAGTTACAATAGAATAGGTCAAAGTTACAAGTCTTGTA
8922411 TCCCTGAAGTT
1 TCCCTGAAGTT
8922422 GCAGTGGAGC
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30
Consensus pattern (44 bp):
TCCCTGAAGTTACAATAGAATAGGTCAAAGTTACAAGTCTTGTA
Found at i:8923898 original size:17 final size:17
Alignment explanation
Indices: 8923876--8923910 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
8923866 TATTCTACTT
*
8923876 TAATTTTATTATTGTTA
1 TAATTTTATTATTATTA
8923893 TAATTTTATTATTATTA
1 TAATTTTATTATTATTA
8923910 T
1 T
8923911 TATCATCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (17 bp):
TAATTTTATTATTATTA
Found at i:8923904 original size:3 final size:3
Alignment explanation
Indices: 8923881--8924002 Score: 56
Period size: 3 Copynumber: 40.0 Consensus size: 3
8923871 TACTTTAATT
* * * *
8923881 TTA TTA TTG TTA TAA TT- TTA TTA TTA TTA TTA TCA TCA TTA TTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
* * * *
8923929 TTA GTGTA -TA GT- TTA TGTA TACA TGTA -TA TTG TTA TAA TT- TTA
1 TTA -T-TA TTA TTA TTA T-TA T-TA T-TA TTA TTA TTA TTA TTA TTA
* *
8923972 TTA TTA TTA TTA TCA TCA TTA TTA TTTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
8924003 GTGTATAGTT
Statistics
Matches: 92, Mismatches: 17, Indels: 20
0.71 0.13 0.16
Matches are distributed among these distances:
2 9 0.10
3 68 0.74
4 13 0.14
5 2 0.02
ACGTcount: A:0.31, C:0.04, G:0.06, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:8924001 original size:71 final size:71
Alignment explanation
Indices: 8923885--8924029 Score: 272
Period size: 71 Copynumber: 2.0 Consensus size: 71
8923875 TTAATTTTAT
*
8923885 TATTGTTATAATTTTATTATTATTATTATCATCATTATTATTTATTAGTGTATAGTTTATGTATA
1 TATTGTTATAATTTTATTATTATTATTATCATCATTATTATTTATTAGTGTATAGTTTATATATA
8923950 CATGTA
66 CATGTA
8923956 TATTGTTATAATTTTATTATTATTATTATCATCATTATTATTTATTAGTGTATAGTTTATATATA
1 TATTGTTATAATTTTATTATTATTATTATCATCATTATTATTTATTAGTGTATAGTTTATATATA
*
8924021 TATGTA
66 CATGTA
8924027 TAT
1 TAT
8924030 ATGTAGTAAT
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 72 1.00
ACGTcount: A:0.32, C:0.03, G:0.08, T:0.57
Consensus pattern (71 bp):
TATTGTTATAATTTTATTATTATTATTATCATCATTATTATTTATTAGTGTATAGTTTATATATA
CATGTA
Found at i:8924048 original size:71 final size:71
Alignment explanation
Indices: 8923885--8924048 Score: 242
Period size: 71 Copynumber: 2.3 Consensus size: 71
8923875 TTAATTTTAT
* * *
8923885 TATTGTTATAATTTTATTATTATTATTATCATCATTATTATTTATTAGTGTATAGTTTATGTATA
1 TATTGTTATAATGTTACTATTATTATTATCATCATTATTATTTATTAGTGTATAGTTTATATATA
8923950 CATGTA
66 CATGTA
* *
8923956 TATTGTTATAATTTTATTATTATTATTATCATCATTATTATTTATTAGTGTATAGTTTATATATA
1 TATTGTTATAATGTTACTATTATTATTATCATCATTATTATTTATTAGTGTATAGTTTATATATA
*
8924021 TATGTA
66 CATGTA
8924027 TATATG-TAGTAATGTT-CTATTA
1 TAT-TGTTA-TAATGTTACTATTA
8924049 CTTTATTTTT
Statistics
Matches: 87, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
71 79 0.91
72 8 0.09
ACGTcount: A:0.32, C:0.04, G:0.09, T:0.56
Consensus pattern (71 bp):
TATTGTTATAATGTTACTATTATTATTATCATCATTATTATTTATTAGTGTATAGTTTATATATA
CATGTA
Found at i:8924072 original size:71 final size:71
Alignment explanation
Indices: 8923885--8924073 Score: 224
Period size: 71 Copynumber: 2.7 Consensus size: 71
8923875 TTAATTTTAT
* * * *
8923885 TATTGTTATAATTTTATTATTATTATTATCATCATTATTATTTATTAGTGTATAGTTTATGTATA
1 TATTGTTATAATTTTATTACTATTATTATCATAATTATCATTTATTAGTGTATAGTTTATATATA
8923950 CATGTA
66 CATGTA
* * *
8923956 TATTGTTATAATTTTATTATTATTATTATCATCATTATTATTTATTAGTGTATAGTTTATATATA
1 TATTGTTATAATTTTATTACTATTATTATCATAATTATCATTTATTAGTGTATAGTTTATATATA
*
8924021 TATGTA
66 CATGTA
* *
8924027 TATATG-TAGTAATGTTCTATTACT-TTATTTTTATAATT-TCA-TTATTA
1 TAT-TGTTA-TAAT-TT-TATTACTATTATTATCATAATTATCATTTATTA
8924074 TAGCAACTTT
Statistics
Matches: 107, Mismatches: 7, Indels: 8
0.88 0.06 0.07
Matches are distributed among these distances:
71 80 0.75
72 8 0.07
73 13 0.12
74 6 0.06
ACGTcount: A:0.31, C:0.04, G:0.07, T:0.57
Consensus pattern (71 bp):
TATTGTTATAATTTTATTACTATTATTATCATAATTATCATTTATTAGTGTATAGTTTATATATA
CATGTA
Found at i:8924304 original size:15 final size:15
Alignment explanation
Indices: 8924285--8924320 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
8924275 ATTATCTCTA
8924285 ATATATGTATATATT
1 ATATATGTATATATT
* *
8924300 GTATATGTTTATATT
1 ATATATGTATATATT
8924315 ATATAT
1 ATATAT
8924321 ATATTATTTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (15 bp):
ATATATGTATATATT
Found at i:8924626 original size:20 final size:21
Alignment explanation
Indices: 8924581--8924626 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
8924571 TTACCAATGT
*
8924581 TAGTACATATATTTTATTATA
1 TAGTATATATATTTTATTATA
*
8924602 -CGTATATATATTTT-TTATA
1 TAGTATATATATTTTATTATA
8924621 TAGTAT
1 TAGTAT
8924627 TATTTTCATT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.35, C:0.04, G:0.07, T:0.54
Consensus pattern (21 bp):
TAGTATATATATTTTATTATA
Found at i:8929084 original size:19 final size:19
Alignment explanation
Indices: 8929060--8929157 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
8929050 AATGTATAAG
8929060 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
8929079 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
8929098 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
8929115 GATATGCAAACTTAGATAT
1 GATATGCAATCTTAGATAT
8929134 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
8929155 GAT
1 GAT
8929158 CTTGTAATCA
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 16 0.23
19 46 0.65
21 9 0.13
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:8929107 original size:36 final size:37
Alignment explanation
Indices: 8929060--8929166 Score: 135
Period size: 36 Copynumber: 2.8 Consensus size: 37
8929050 AATGTATAAG
8929060 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
1 GATA-GCAATCTTAGATATGATATGTAATCTTAGATAT
* *
8929098 GATA-CAATCTTAGATATGATATGCAAACTTAGATAT
1 GATAGCAATCTTAGATATGATATGTAATCTTAGATAT
*
8929134 GATATGCAATCTTGAAGATATGATCTTGTAATC
1 GATA-GCAATCTT--AGATATGAT-ATGTAATC
8929167 ATGGAGATTT
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
36 34 0.58
38 11 0.19
40 9 0.15
41 5 0.08
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
GATAGCAATCTTAGATATGATATGTAATCTTAGATAT
Found at i:8931175 original size:25 final size:24
Alignment explanation
Indices: 8931116--8931162 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
8931106 AGAACCAATC
8931116 AAATTTGAAAACATTCTTTTTGAA
1 AAATTTGAAAACATTCTTTTTGAA
*
8931140 AAATTTGAAAACGTTCTTTTTGA
1 AAATTTGAAAACATTCTTTTTGA
8931163 CTAACTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.38, C:0.09, G:0.11, T:0.43
Consensus pattern (24 bp):
AAATTTGAAAACATTCTTTTTGAA
Found at i:8938010 original size:126 final size:126
Alignment explanation
Indices: 8937785--8938045 Score: 389
Period size: 126 Copynumber: 2.1 Consensus size: 126
8937775 GTCGACTTTA
* * ** *
8937785 TAAAACAAAGGCGAAGTTTGATGTTTAGCAATTCGAGGGTTCGTACCCTAATGTGTTGGGTTTCA
1 TAAAACAAAGGCGAAGTTTGATGTTTAGAAATTCAAGGAATCGTACCCTAATGTGCTGGGTTTCA
*
8937850 ATCTTTCGTTTGTTTAAATAATCAAATTTCCCTTTAAAATTTCGTCC-TGTTTTCTAAACCT
66 ATCTTTCGTTTGTCTAAATAATCAAATTTCCCTTTAAAATTTCGTCCGTGTTTTCTAAA-CT
* * * *
8937911 TAAAACAAAGGCGATGTTTGATGTTTAGAAATTCAAGGAATCGTGCTCTAATGTGCTGGGTTTCG
1 TAAAACAAAGGCGAAGTTTGATGTTTAGAAATTCAAGGAATCGTACCCTAATGTGCTGGGTTTCA
* *
8937976 ATCTTTCGTTTGTCTAAATAATCAGATTTCCCTTTTAAATTTCGTCCGTGTTTTCTAAACT
66 ATCTTTCGTTTGTCTAAATAATCAAATTTCCCTTTAAAATTTCGTCCGTGTTTTCTAAACT
8938037 TCAAAACAA
1 T-AAAACAA
8938046 GGAAATATTT
Statistics
Matches: 121, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
126 103 0.85
127 18 0.15
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (126 bp):
TAAAACAAAGGCGAAGTTTGATGTTTAGAAATTCAAGGAATCGTACCCTAATGTGCTGGGTTTCA
ATCTTTCGTTTGTCTAAATAATCAAATTTCCCTTTAAAATTTCGTCCGTGTTTTCTAAACT
Found at i:8938093 original size:126 final size:126
Alignment explanation
Indices: 8937785--8938103 Score: 342
Period size: 126 Copynumber: 2.5 Consensus size: 126
8937775 GTCGACTTTA
* * * *** * * * *
8937785 TAAAACAAAGGCGAA-GTTTGATGTTTAGCAATTCGAGGGTTCGTACCCTAATGTGTTGGGTTTC
1 TAAAACAAAGG-AAATGTTTGATGTTTAGAAATTCAAGAAATCATGCCCTAACGTGCTGGGTTTC
* *
8937849 AATCTTTCGTTTGTTTAAATAATCAAATTTCCCTTTAAAATTTCGTCCTGTTTTCTAAACCT
65 GATCTTTCGTTTGTCTAAATAATCAAATTTCCCTTTAAAATTTCGTCCTGTTTTCTAAACCT
** * * * *
8937911 TAAAACAAAGGCGATGTTTGATGTTTAGAAATTCAAGGAATCGTGCTCTAATGTGCTGGGTTTCG
1 TAAAACAAAGGAAATGTTTGATGTTTAGAAATTCAAGAAATCATGCCCTAACGTGCTGGGTTTCG
* *
8937976 ATCTTTCGTTTGTCTAAATAATCAGATTTCCCTTTTAAATTTCGTCCGTGTTTTCTAAA-CT
66 ATCTTTCGTTTGTCTAAATAATCAAATTTCCCTTTAAAATTTCGTCC-TGTTTTCTAAACCT
* * **
8938037 TCAAAAC-AAGGAAATATTTTG-TGTTTGGAAATTTTGAGAAATCATGCCCT-ACGTGCTGGGTT
1 T-AAAACAAAGGAAAT-GTTTGATGTTTAGAAA-TTCAAGAAATCATGCCCTAACGTGCTGGGTT
8938099 TCGAT
63 TCGAT
8938104 TTACCGTTTG
Statistics
Matches: 165, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
125 1 0.01
126 131 0.79
127 33 0.20
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (126 bp):
TAAAACAAAGGAAATGTTTGATGTTTAGAAATTCAAGAAATCATGCCCTAACGTGCTGGGTTTCG
ATCTTTCGTTTGTCTAAATAATCAAATTTCCCTTTAAAATTTCGTCCTGTTTTCTAAACCT
Found at i:8939918 original size:26 final size:26
Alignment explanation
Indices: 8939889--8939996 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
8939879 TGGTACAAAT
*
8939889 TGATAATGGGTTAGGTAAATATTCTA
1 TGATAATGGGTTAGGTAAATATTCCA
*
8939915 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
**
8939941 TGATAATGGGTTAGGTAAATGCTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
8939967 TGATAATGGTTTAGGTAAATATTCTA
1 TGATAATGGGTTAGGTAAATATTCCA
8939993 TGAT
1 TGAT
8939997 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:8942625 original size:143 final size:143
Alignment explanation
Indices: 8942367--8942653 Score: 556
Period size: 143 Copynumber: 2.0 Consensus size: 143
8942357 ATCAAATCGG
*
8942367 TTTCCTAGAAATATACATGACGTTAAGGTGTGGCAATGGCGGTGTGTATGTCTAGGATTGGATCC
1 TTTCCTAGAAATATACATGACGTTAAGGTATGGCAATGGCGGTGTGTATGTCTAGGATTGGATCC
8942432 GAAGGGAGCTTGGTACTTAAGTAGTCCGATAGACTCACCTCCTCTTTTCCGGTTTCCTACCTGGT
66 GAAGGGAGCTTGGTACTTAAGTAGTCCGATAGACTCACCTCCTCTTTTCCGGTTTCCTACCTGGT
8942497 GCACAGCTTCCAT
131 GCACAGCTTCCAT
*
8942510 TTTCCTAGAAATATACATGACGTTAAGGTATGGCAATGGCGGTGTGTATGTCTAGGATTGGATTC
1 TTTCCTAGAAATATACATGACGTTAAGGTATGGCAATGGCGGTGTGTATGTCTAGGATTGGATCC
8942575 GAAGGGAGCTTGGTACTTAAGTAGTCCGATAGACTCACCTCCTCTTTTCCGGTTTCCTACCTGGT
66 GAAGGGAGCTTGGTACTTAAGTAGTCCGATAGACTCACCTCCTCTTTTCCGGTTTCCTACCTGGT
8942640 GCACAGCTTCCAT
131 GCACAGCTTCCAT
8942653 T
1 T
8942654 CACTTTAACC
Statistics
Matches: 142, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 142 1.00
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (143 bp):
TTTCCTAGAAATATACATGACGTTAAGGTATGGCAATGGCGGTGTGTATGTCTAGGATTGGATCC
GAAGGGAGCTTGGTACTTAAGTAGTCCGATAGACTCACCTCCTCTTTTCCGGTTTCCTACCTGGT
GCACAGCTTCCAT
Found at i:8942893 original size:19 final size:19
Alignment explanation
Indices: 8942869--8942914 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
8942859 CTCTCTTTCT
8942869 TTTGCATT-CATTCCATACA
1 TTTGCATTGCATTCCAT-CA
*
8942888 TTTGCATTGCATTGCATCA
1 TTTGCATTGCATTCCATCA
8942907 TTTGCATT
1 TTTGCATT
8942915 AAACTTTCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.46
Consensus pattern (19 bp):
TTTGCATTGCATTCCATCA
Found at i:8945126 original size:16 final size:16
Alignment explanation
Indices: 8945102--8945140 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
8945092 TAACAAAGGC
8945102 AAAAAAAAACGA-AAAG
1 AAAAAAAAA-GAGAAAG
*
8945118 AAAAGAAAAGAGAAAG
1 AAAAAAAAAGAGAAAG
8945134 AAAAAAA
1 AAAAAAA
8945141 CAAAAACAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAGAGAAAG
Found at i:8946179 original size:18 final size:18
Alignment explanation
Indices: 8946158--8946194 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
8946148 ATTAACTTAT
8946158 TCATTTTGAGTTAATTTC
1 TCATTTTGAGTTAATTTC
8946176 TCATTTTGAGTTAATTTC
1 TCATTTTGAGTTAATTTC
8946194 T
1 T
8946195 TTCTTATTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.11, G:0.11, T:0.57
Consensus pattern (18 bp):
TCATTTTGAGTTAATTTC
Found at i:8946939 original size:64 final size:64
Alignment explanation
Indices: 8946865--8946989 Score: 198
Period size: 64 Copynumber: 2.0 Consensus size: 64
8946855 TTCATAACAC
* * *
8946865 ATCTAGTTAGGAGCATTTGATTTATTTTGATCAT-AGCATCCTAGTTATTTGACATAAGCATCAT
1 ATCTAGTTAGGAGCATTTGATTCATTTCGATCATGA-CATCCTAATTATTTGACATAAGCATCAT
*
8946929 ATCTAGTTAGGAGCATTTGATTCATTTCGATCATGACATCCTAATTATTTGGCATAAGCAT
1 ATCTAGTTAGGAGCATTTGATTCATTTCGATCATGACATCCTAATTATTTGACATAAGCAT
8946990 GGATACATGA
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
64 55 0.98
65 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.39
Consensus pattern (64 bp):
ATCTAGTTAGGAGCATTTGATTCATTTCGATCATGACATCCTAATTATTTGACATAAGCATCAT
Found at i:8947216 original size:45 final size:45
Alignment explanation
Indices: 8947165--8947349 Score: 119
Period size: 45 Copynumber: 4.2 Consensus size: 45
8947155 TCCCTAAGAA
* *
8947165 GTAGTGGAGTAGGTTGAAGATTGTAGATCTTGTCTCCTTGAAGTT
1 GTAGTGGAGCAGATTGAAGATTGTAGATCTTGTCTCCTTGAAGTT
* * * * *
8947210 GTAGTGGAACAGATCGAAAATGGT-GAACCTTGTCT-CTCTGAAGTT
1 GTAGTGGAGCAGATTGAAGATTGTAG-ATCTTGTCTCCT-TGAAGTT
* * ** ** * * *
8947255 GCAGTGGAGCAGATTTAAG-CCG-CCATCCTATCTCCTT-AAGTA
1 GTAGTGGAGCAGATTGAAGATTGTAGATCTTGTCTCCTTGAAGTT
* ** * *
8947297 GTAGTGGAGTAGGCTGAAGATTGCAGATCTTGTCTCCCTGAAGTT
1 GTAGTGGAGCAGATTGAAGATTGTAGATCTTGTCTCCTTGAAGTT
*
8947342 GCAGTGGA
1 GTAGTGGA
8947350 ACTGATCGAA
Statistics
Matches: 100, Mismatches: 33, Indels: 14
0.68 0.22 0.10
Matches are distributed among these distances:
42 18 0.18
43 8 0.08
44 16 0.16
45 58 0.58
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (45 bp):
GTAGTGGAGCAGATTGAAGATTGTAGATCTTGTCTCCTTGAAGTT
Found at i:8947300 original size:132 final size:132
Alignment explanation
Indices: 8947056--8947495 Score: 634
Period size: 132 Copynumber: 3.3 Consensus size: 132
8947046 GGTGAATTTA
* * *
8947056 CAGATCTCGTCTCCCTGAAGTTGCAGTGGAATAGATCGAAGACGGCGAATCTCGTCTCTCTGAAG
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGCGAATCTTGTCTCTCTGAAG
* * *
8947121 TTGCAGTGGAGCAAATTTAAGCTACCATCCTATCTCCCTAAGAAGTAGTGGAGTAGGTTGAAGAT
66 TTGCAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGAAGTAGTGGAGTAGGCTGAAGAT
8947186 TG
131 TG
* * * * * * *
8947188 TAGATCTTGTCTCCTTGAAGTTGTAGTGGAACAGATCGAAAATGGTGAACCTTGTCTCTCTGAAG
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGCGAATCTTGTCTCTCTGAAG
* * *
8947253 TTGCAGTGGAGCAGATTTAAGCCGCCATCCTATCTCCTTAAGTAGTAGTGGAGTAGGCTGAAGAT
66 TTGCAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGAAGTAGTGGAGTAGGCTGAAGAT
8947318 TG
131 TG
* *
8947320 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACTGATCGAAGACGGCGAATCTTGTCTCCCTGACC
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGCGAATCTTGTCTCTCTGA--
* * *
8947385 AG-T--AGTGGAACGGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAG
64 AGTTGCAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGAAGTAGTGGAGTAGGCTGAAG
8947447 ATTG
129 ATTG
* *
8947451 CAGATCTTGTCTCTCTGAAGTTGCAGTGGAACAGATCAAAGACGG
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGG
8947496 TGAGCCTTAA
Statistics
Matches: 273, Mismatches: 33, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
131 100 0.37
132 170 0.62
133 1 0.00
134 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (132 bp):
CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGCGAATCTTGTCTCTCTGAAG
TTGCAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGAAGTAGTGGAGTAGGCTGAAGAT
TG
Found at i:8947552 original size:131 final size:130
Alignment explanation
Indices: 8947056--8947570 Score: 380
Period size: 132 Copynumber: 3.9 Consensus size: 130
8947046 GGTGAATTTA
* * * * *** *
8947056 CAGATCTCGTCTCCCTGAAGTTGCAGTGGAATAGATCGAAGACGGCGAATCTCGTCTCTCTGA-A
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGGCGAACCTTAACTCCCTGACA
* ** * * * * * *
8947120 GTTGCAGTGGAGCAAATTTAAG-CTACCATCCTATCTCCCTAAGAAGTAGTGGAGTAGGTTGAAG
66 G-T--AGTGGAACGGACTGAAGAC-ACAATCCTACCTCCCTAAGCAGTAGTGGAGTAGGCTGAAG
8947184 ATTG
127 ATTG
* * * * * ** *
8947188 TAGATCTTGTCTCCTTGAAGTTGTAGTGGAACAGATCGAAA-ATGGTGAACCTTGTCTCTCTGA-
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATC-AAAGACGGCGAACCTTAACTCCCTGAC
* * * * * * * * * *
8947251 AGTTGCAGTGGAGCAGATTTAAGCCGCCATCCTATCTCCTTAAGTAGTAGTGGAGTAGGCTGAAG
65 AG-T--AGTGGAACGGACTGAAGACACAATCCTACCTCCCTAAGCAGTAGTGGAGTAGGCTGAAG
8947316 ATTG
127 ATTG
* * * **
8947320 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACTGATCGAAGACGGCGAATCTTGTCTCCCTGACC
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGGCGAACCTTAACTCCCTGA-C
* * * * *
8947385 AGTAGTGGAACGGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATT
65 AGTAGTGGAACGGACTGAAGACACAATCCTACCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATT
8947450 G
130 G
* * * *
8947451 CAGATCTTGTCTCTCTGAAGTTGCAGTGGAACAGATCAAAGACGGTGAGCCTTAAC-CCCTTA-A
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGGCGAACCTTAACTCCCTGACA
* * *
8947514 GTAGTAGGGTAACAGG-CTGAATTACA-AATCTTACCTCCCTAAGCAGTAGTAGAGTAG
66 GTAGT--GG-AAC-GGACTGAA-GACACAATCCTACCTCCCTAAGCAGTAGTGGAGTAG
8947571 ATCAAAGATG
Statistics
Matches: 327, Mismatches: 46, Indels: 21
0.83 0.12 0.05
Matches are distributed among these distances:
128 6 0.02
130 7 0.02
131 141 0.43
132 167 0.51
133 4 0.01
134 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (130 bp):
CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGGCGAACCTTAACTCCCTGACA
GTAGTGGAACGGACTGAAGACACAATCCTACCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTG
Found at i:8947794 original size:88 final size:88
Alignment explanation
Indices: 8947673--8948183 Score: 718
Period size: 88 Copynumber: 5.8 Consensus size: 88
8947663 AAATCAACAA
* * * *
8947673 TTCGTATCTCCTTGAAGTTTCAACGGAGAAGATCGAGTCTACAAACCTCTTCTCCCTGAAATGGC
1 TTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGC
* * *
8947738 GTTGGAGTGGCTCGAAGCCACAT
66 ATTGGAGCGGCTCGAAGCCACAG
* *
8947761 TTCGTATCTCCTTGAAGTTTCAGCAGAGTAGATCGAGGCTACAAATCTCTTCTCTCTGAAATGGC
1 TTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGC
8947826 ATTGGAGCGGCTCGAAGCCACAG
66 ATTGGAGCGGCTCGAAGCCACAG
** *
8947849 TTCGTATCTCCTTGAAG-TTCTAGCGGAGTAGATCGAAACTACAAATCTCTTCTCCTTGAAATGG
1 TTCGTATCTCCTTGAAGTTTC-AGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGG
*
8947913 CATTGGAGCGGCTTGAAGCCACAG
65 CATTGGAGCGGCTCGAAGCCACAG
* * *
8947937 TTAGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCTTGAAATGGC
1 TTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGC
* * *
8948002 ACTGGAGTGGCTCGAAGCCATAG
66 ATTGGAGCGGCTCGAAGCCACAG
* * * *
8948025 TTCGTATCTCCTTGAAGTTTGAGCAGAGTAGATCGAGGCTACAAATCTCTTTTCCCTAAAATGGC
1 TTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGC
*
8948090 ATTGGAGCGGCTCGAAGCCACGG
66 ATTGGAGCGGCTCGAAGCCACAG
* * * * ** * *
8948113 TTCATATCTCCTTGAAGTTCCAGTGGGGTAGATCGAACCTACAAATATCTTCTCTCTGAAATGGC
1 TTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGC
8948178 ATTGGA
66 ATTGGA
8948184 ACAGACTAAA
Statistics
Matches: 375, Mismatches: 46, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
87 3 0.01
88 370 0.99
89 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.28
Consensus pattern (88 bp):
TTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGC
ATTGGAGCGGCTCGAAGCCACAG
Found at i:8947991 original size:44 final size:44
Alignment explanation
Indices: 8947679--8948075 Score: 149
Period size: 44 Copynumber: 9.0 Consensus size: 44
8947669 ACAATTCGTA
* * * *
8947679 TCTCCTTGAAGTTTCAACGGAGAAGATCG-AGTCTACAAACCTCT
1 TCTCCTTGAAGTTGCAGCGGAGTAGATCGAAG-CTACAAATCTCT
* * * * * * * *
8947723 TCTCCCTGAAATGGC-GTTGGAGTGGCTCGAAGC--CACATTTCGT
1 TCTCCTTGAAGTTGCAG-CGGAGTAGATCGAAGCTACAAATCTC-T
* * *
8947766 ATCTCCTTGAAGTTTCAGCAGAGTAGATCGAGGCTACAAATCTCT
1 -TCTCCTTGAAGTTGCAGCGGAGTAGATCGAAGCTACAAATCTCT
* * ** ** * * *
8947811 TCT-CTCTGAAATGGCATTGGAGCGGCTCGAAGCCAC-AGT-TCGT
1 TCTCCT-TGAAGTTGCAGCGGAGTAGATCGAAGCTACAAATCTC-T
*
8947854 ATCTCCTTGAAGTT-CTAGCGGAGTAGATCGAAACTACAAATCTCT
1 -TCTCCTTGAAGTTGC-AGCGGAGTAGATCGAAGCTACAAATCTCT
* * ** ** * * * * *
8947899 TCTCCTTGAAATGGCATTGGAGCGGCTTGAAGCCAC-AGT-TAGT
1 TCTCCTTGAAGTTGCAGCGGAGTAGATCGAAGCTACAAATCT-CT
* *
8947942 ATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCT
1 -TCTCCTTGAAGTTGCAGCGGAGTAGATCGAAGCTACAAATCTCT
* * * * *
8947987 TCTCCTTGAAATGGCA-CTGGAGTGGCTCGAAGC--CATAGT-TCGT
1 TCTCCTTGAAGTTGCAGC-GGAGTAGATCGAAGCTACA-AATCTC-T
* *
8948030 ATCTCCTTGAAGTTTG-AGCAGAGTAGATCGAGGCTACAAATCTCT
1 -TCTCCTTGAAG-TTGCAGCGGAGTAGATCGAAGCTACAAATCTCT
8948075 T
1 T
8948076 TTCCCTAAAA
Statistics
Matches: 241, Mismatches: 84, Indels: 56
0.63 0.22 0.15
Matches are distributed among these distances:
42 12 0.05
43 14 0.06
44 183 0.76
45 19 0.08
46 13 0.05
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.28
Consensus pattern (44 bp):
TCTCCTTGAAGTTGCAGCGGAGTAGATCGAAGCTACAAATCTCT
Found at i:8948031 original size:264 final size:264
Alignment explanation
Indices: 8947676--8948183 Score: 811
Period size: 264 Copynumber: 1.9 Consensus size: 264
8947666 TCAACAATTC
* * **
8947676 GTATCTCCTTGAAGTTTCAACGGAGAAGATCGAGTCTACAAACCTCTTCTCCCTGAAATGGCGTT
1 GTATCTCCTTGAAGTTCCAACGGAGAAGATCGAGGCTACAAACCTCTTCTCCCTGAAATGGCACT
*
8947741 GGAGTGGCTCGAAGCCACATTTCGTATCTCCTTGAAGTTTCAGCAGAGTAGATCGAGGCTACAAA
66 GGAGTGGCTCGAAGCCACAGTTCGTATCTCCTTGAAGTTTCAGCAGAGTAGATCGAGGCTACAAA
* * * *
8947806 TCTCTTCTCTCTGAAATGGCATTGGAGCGGCTCGAAGCCACAGTTCGTATCTCCTTGAAGTTCTA
131 TCTCTTCTCCCTAAAATGGCATTGGAGCGGCTCGAAGCCACAGTTCATATCTCCTTGAAGTTCCA
*
8947871 GCGGAGTAGATCGAAACTACAAATCTCTTCTC-CTTGAAATGGCATTGGAGCGGCTTGAAGCCAC
196 GCGGAGTAGATCGAAACTACAAATATCTTCTCTC-TGAAATGGCATTGGAGCGGCTTGAAGCCAC
8947935 AGTTA
260 AGTTA
* * * *
8947940 GTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCTTGAAATGGCACT
1 GTATCTCCTTGAAGTTCCAACGGAGAAGATCGAGGCTACAAACCTCTTCTCCCTGAAATGGCACT
* *
8948005 GGAGTGGCTCGAAGCCATAGTTCGTATCTCCTTGAAGTTTGAGCAGAGTAGATCGAGGCTACAAA
66 GGAGTGGCTCGAAGCCACAGTTCGTATCTCCTTGAAGTTTCAGCAGAGTAGATCGAGGCTACAAA
* *
8948070 TCTCTTTTCCCTAAAATGGCATTGGAGCGGCTCGAAGCCACGGTTCATATCTCCTTGAAGTTCCA
131 TCTCTTCTCCCTAAAATGGCATTGGAGCGGCTCGAAGCCACAGTTCATATCTCCTTGAAGTTCCA
* * *
8948135 GTGGGGTAGATCGAACCTACAAATATCTTCTCTCTGAAATGGCATTGGA
196 GCGGAGTAGATCGAAACTACAAATATCTTCTCTCTGAAATGGCATTGGA
8948184 ACAGACTAAA
Statistics
Matches: 222, Mismatches: 21, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
264 221 1.00
265 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (264 bp):
GTATCTCCTTGAAGTTCCAACGGAGAAGATCGAGGCTACAAACCTCTTCTCCCTGAAATGGCACT
GGAGTGGCTCGAAGCCACAGTTCGTATCTCCTTGAAGTTTCAGCAGAGTAGATCGAGGCTACAAA
TCTCTTCTCCCTAAAATGGCATTGGAGCGGCTCGAAGCCACAGTTCATATCTCCTTGAAGTTCCA
GCGGAGTAGATCGAAACTACAAATATCTTCTCTCTGAAATGGCATTGGAGCGGCTTGAAGCCACA
GTTA
Found at i:8948238 original size:44 final size:44
Alignment explanation
Indices: 8948180--8948501 Score: 209
Period size: 44 Copynumber: 7.1 Consensus size: 44
8948170 GAAATGGCAT
* * * *
8948180 TGGAACAGACTAAAGATACCAATTTTATCTCCCTGAAGTTGTAG
1 TGGAGCAGACTAAAGATACAAATCTTATCTCCCTGAAGTTGCAG
* * * * *
8948224 TGGAGCAGATTAAAGCTACAAACCTTATCCCCCTGAAGTGGCAG
1 TGGAGCAGACTAAAGATACAAATCTTATCTCCCTGAAGTTGCAG
* ** * * * * *
8948268 TGGGGCAGGTTGAAGTTACAAGTCTTATCTCCTTGGAGTTGCAG
1 TGGAGCAGACTAAAGATACAAATCTTATCTCCCTGAAGTTGCAG
** * *
8948312 TGGAGCAGACTGGAGATAGCAAATCTTATCTCCATGAAGTTGCAA
1 TGGAGCAGACTAAAGATA-CAAATCTTATCTCCCTGAAGTTGCAG
* * * *
8948357 T-GAGGCAGATTGAAGCTACAA-ACCACAAACCTTATCTCCTTGAATTTGCAG
1 TGGA-GC--A--G-A-CTA-AAGA-TACAAATCTTATCTCCCTGAAGTTGCAG
* * * * *
8948408 TGGAGCAGACTGAAGATAGCAAACCTTATCTCCCCGAAGTAGTAG
1 TGGAGCAGACTAAAGATA-CAAATCTTATCTCCCTGAAGTTGCAG
** * * *
8948453 TGGAGCAGGTTAAA-TTATAAGTCTTATCTCCCTGAAGTTGCAG
1 TGGAGCAGACTAAAGATACAAATCTTATCTCCCTGAAGTTGCAG
8948496 TGGAGC
1 TGGAGC
8948502 GGGTCAAAAC
Statistics
Matches: 213, Mismatches: 52, Indels: 27
0.73 0.18 0.09
Matches are distributed among these distances:
43 26 0.12
44 89 0.42
45 60 0.28
46 1 0.00
47 2 0.01
49 2 0.01
50 1 0.00
51 28 0.13
52 4 0.02
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (44 bp):
TGGAGCAGACTAAAGATACAAATCTTATCTCCCTGAAGTTGCAG
Found at i:8948416 original size:51 final size:52
Alignment explanation
Indices: 8948331--8948432 Score: 127
Period size: 51 Copynumber: 2.0 Consensus size: 52
8948321 CTGGAGATAG
* * *
8948331 CAAATCTTATCTCCATGAAGTTGCAATGAGGCAGATTGAAGCTA-CAAACCA
1 CAAACCTTATCTCCATGAAGTTGCAATGAGGCAGACTGAAGATAGCAAACCA
* * *
8948382 CAAACCTTATCTCCTTGAATTTGCAGTG-GAGCAGACTGAAGATAGCAAACC
1 CAAACCTTATCTCCATGAAGTTGCAATGAG-GCAGACTGAAGATAGCAAACC
8948433 TTATCTCCCC
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
50 1 0.02
51 36 0.84
52 6 0.14
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.24
Consensus pattern (52 bp):
CAAACCTTATCTCCATGAAGTTGCAATGAGGCAGACTGAAGATAGCAAACCA
Found at i:8949973 original size:58 final size:58
Alignment explanation
Indices: 8949900--8950015 Score: 214
Period size: 58 Copynumber: 2.0 Consensus size: 58
8949890 TGGCCCACGC
8949900 ATAAACATTTCGTTTTGGGATTGGGTTTATTTGTATTTTTAGTCCTCGTACATTGATG
1 ATAAACATTTCGTTTTGGGATTGGGTTTATTTGTATTTTTAGTCCTCGTACATTGATG
* *
8949958 ATAAACGTTTTGTTTTGGGATTGGGTTTATTTGTATTTTTAGTCCTCGTACATTGATG
1 ATAAACATTTCGTTTTGGGATTGGGTTTATTTGTATTTTTAGTCCTCGTACATTGATG
8950016 CGTATTGCAT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.20, C:0.09, G:0.22, T:0.49
Consensus pattern (58 bp):
ATAAACATTTCGTTTTGGGATTGGGTTTATTTGTATTTTTAGTCCTCGTACATTGATG
Found at i:8950276 original size:17 final size:17
Alignment explanation
Indices: 8950242--8950289 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
8950232 TTTTAACTGC
*
8950242 ATTTATTTTTATTTTTAT
1 ATTTATTTTT-TTGTTAT
8950260 ATTTATTTTTTTGTTAT
1 ATTTATTTTTTTGTTAT
* *
8950277 AGTTATTATTTTG
1 ATTTATTTTTTTG
8950290 AGACCTTACT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 17 0.63
18 10 0.37
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.73
Consensus pattern (17 bp):
ATTTATTTTTTTGTTAT
Found at i:8951547 original size:126 final size:126
Alignment explanation
Indices: 8951322--8951554 Score: 367
Period size: 126 Copynumber: 1.8 Consensus size: 126
8951312 GTCGACTTTA
* * ** *
8951322 TAAAACAAAGGCGAAGTTTGATGTTTAGCAATTCGAGGGTTCATGCCCTAATGTGTTGGGTTTCA
1 TAAAACAAAGGCGAAGTTTGATGTTTAGAAATTCAAGGAATCATGCCCTAATGTGATGGGTTTCA
*
8951387 ATCTTTCGTTTGTTTAAATAATCAAATTTCCCTTTAAAATTTCGTCCTATTTTCTAAACCT
66 ATCTTTCGTTTGTCTAAATAATCAAATTTCCCTTTAAAATTTCGTCCTATTTTCTAAACCT
* * *
8951448 TAAAACAAAGGCGATGTTTGATGTTTAGAAATTCAAGGAATCATGCTCTAATGTGATGGGTTTCG
1 TAAAACAAAGGCGAAGTTTGATGTTTAGAAATTCAAGGAATCATGCCCTAATGTGATGGGTTTCA
* *
8951513 ATCTTTCGTTTGTCTAAATAATCAGATTTCCCTTTTAAATTT
66 ATCTTTCGTTTGTCTAAATAATCAAATTTCCCTTTAAAATTT
8951555 TTTTCGTGTT
Statistics
Matches: 96, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
126 96 1.00
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (126 bp):
TAAAACAAAGGCGAAGTTTGATGTTTAGAAATTCAAGGAATCATGCCCTAATGTGATGGGTTTCA
ATCTTTCGTTTGTCTAAATAATCAAATTTCCCTTTAAAATTTCGTCCTATTTTCTAAACCT
Found at i:8951599 original size:126 final size:126
Alignment explanation
Indices: 8951338--8951606 Score: 328
Period size: 126 Copynumber: 2.1 Consensus size: 126
8951328 AAAGGCGAAG
* * ** * *
8951338 TTTGATGTTTAGCAATTCGAGGGTTCATGCCCTAATGTGTTGGGTTTCAATCTTTCGTTTGTTTA
1 TTTGATGTTTAGAAATTCAAGGAATCATGCCCTAATGTGATGGGTTTCAATCTTTCGTTTGTCTA
* * *
8951403 AATAATCAAATTTCCCTTTAAAATTTCGTCCTATTTTCTAAACCTTAAAACAAAGGCGATG
66 AATAATCAAATTTCCCTTTAAAATTTCGTCCTATTTTCTAAACCTTAAAACAAAGACAATA
* *
8951464 TTTGATGTTTAGAAATTCAAGGAATCATGCTCTAATGTGATGGGTTTCGATCTTTCGTTTGTCTA
1 TTTGATGTTTAGAAATTCAAGGAATCATGCCCTAATGTGATGGGTTTCAATCTTTCGTTTGTCTA
* * ** * *
8951529 AATAATCAGATTTCCCTTTTAAATTTTTTTCGTGTTTTCTAAA-CTTCAAAAC-AAGACAATA
66 AATAATCAAATTTCCC-TTTAAAATTTCGTCCTATTTTCTAAACCTT-AAAACAAAGACAATA
*
8951590 TTTCG-TGTTTGGAAATT
1 TTT-GATGTTTAGAAATT
8951607 TTGAAAAATC
Statistics
Matches: 122, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
126 95 0.78
127 27 0.22
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.42
Consensus pattern (126 bp):
TTTGATGTTTAGAAATTCAAGGAATCATGCCCTAATGTGATGGGTTTCAATCTTTCGTTTGTCTA
AATAATCAAATTTCCCTTTAAAATTTCGTCCTATTTTCTAAACCTTAAAACAAAGACAATA
Found at i:8951634 original size:126 final size:126
Alignment explanation
Indices: 8951338--8951640 Score: 301
Period size: 126 Copynumber: 2.4 Consensus size: 126
8951328 AAAGGCGAAG
* * *** * * * *
8951338 TTTGATGTTTAGCAATTCGAGGGTTCATGCCCTAATGTGTTGGGTTTCAATCTTTCGTTTGTTTA
1 TTTGATGTTTAGAAATTCAAGAAATCATGCCCTAACGTGATGGGTTTCGATCTTTCGTTTGTCTA
* * *
8951403 AATAATCAAATTTCCCTTTAAAATTTCGTCCTATTTTCTAAACCTTAAAACAAAGGCGATG
66 AATAATCAAATTTCCCTTTAAAATTTCGTCCTATTTTCTAAACCTTAAAACAAAGACAATA
* * *
8951464 TTTGATGTTTAGAAATTCAAGGAATCATGCTCTAATGTGATGGGTTTCGATCTTTCGTTTGTCTA
1 TTTGATGTTTAGAAATTCAAGAAATCATGCCCTAACGTGATGGGTTTCGATCTTTCGTTTGTCTA
* * ** * *
8951529 AATAATCAGATTTCCCTTTTAAATTTTTTTCGTGTTTTCTAAA-CTTCAAAAC-AAGACAATA
66 AATAATCAAATTTCCC-TTTAAAATTTCGTCCTATTTTCTAAACCTT-AAAACAAAGACAATA
* * * *
8951590 TTTCG-TGTTTGGAAATTTTGAA-AAATCGTGCCCT-ACGTGCTGGGTTTCGAT
1 TTT-GATGTTTAGAAA--TTCAAGAAATCATGCCCTAACGTGATGGGTTTCGAT
8951641 TTACCGTTTG
Statistics
Matches: 148, Mismatches: 24, Indels: 10
0.81 0.13 0.05
Matches are distributed among these distances:
126 108 0.73
127 36 0.24
128 4 0.03
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.41
Consensus pattern (126 bp):
TTTGATGTTTAGAAATTCAAGAAATCATGCCCTAACGTGATGGGTTTCGATCTTTCGTTTGTCTA
AATAATCAAATTTCCCTTTAAAATTTCGTCCTATTTTCTAAACCTTAAAACAAAGACAATA
Found at i:8959880 original size:3 final size:3
Alignment explanation
Indices: 8959869--8960078 Score: 411
Period size: 3 Copynumber: 69.7 Consensus size: 3
8959859 CCTTTTTTTG
8959869 TAA TCAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8959915 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8959963 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8960011 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8960059 TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TA
8960079 CTATCAATTA
Statistics
Matches: 206, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
3 203 0.99
4 3 0.01
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:8961178 original size:42 final size:42
Alignment explanation
Indices: 8961119--8961198 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
8961109 TGCATTAGAA
*
8961119 CCACACGGGCAAGGACATGGACATGTGCCCAAGCCGTGTGAG
1 CCACACAGGCAAGGACATGGACATGTGCCCAAGCCGTGTGAG
* * * *
8961161 CCACACAGGCAAGGACATGGGCGTGTGTCCAGGCCGTG
1 CCACACAGGCAAGGACATGGACATGTGCCCAAGCCGTG
8961199 CAACAGACTG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.24, C:0.29, G:0.35, T:0.12
Consensus pattern (42 bp):
CCACACAGGCAAGGACATGGACATGTGCCCAAGCCGTGTGAG
Found at i:8961213 original size:104 final size:104
Alignment explanation
Indices: 8961027--8961293 Score: 313
Period size: 104 Copynumber: 2.6 Consensus size: 104
8961017 ACATGGTCAG
* * * * * * *
8961027 GGACATGGGCATGTGCCTAGGCCGTGTGAGCCACACGGGCAAGGACATGGACGTGTTTCCAGGCT
1 GGACATGGACATGTGCCCAAGCCGTGTGAGCCACACAGGCAAGGACATGGGCGTGTGTCCAGGCC
* * * *
8961092 GTGTAACTCACTATTTATGCA-TTAGAACCACACGGGCAA
66 GTGCAACACACTATTTATG-ATTTAAAACCACACGAGCAA
8961131 GGACATGGACATGTGCCCAAGCCGTGTGAGCCACACAGGCAAGGACATGGGCGTGTGTCCAGGCC
1 GGACATGGACATGTGCCCAAGCCGTGTGAGCCACACAGGCAAGGACATGGGCGTGTGTCCAGGCC
* * * *
8961196 GTGCAACAGACTGTTTATGATTTAAAACCATATGAGCAA
66 GTGCAACACACTATTTATGATTTAAAACCACACGAGCAA
* * ** * *
8961235 TGACATGGACGTGTGCCC-AGGTGATGTGAGCTACACAGGCAAGGACATGGGTGTGTGTC
1 GGACATGGACATGTGCCCAAGCCG-TGTGAGCCACACAGGCAAGGACATGGGCGTGTGTC
8961294 TAGATCGTAT
Statistics
Matches: 140, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
103 4 0.03
104 136 0.97
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.21
Consensus pattern (104 bp):
GGACATGGACATGTGCCCAAGCCGTGTGAGCCACACAGGCAAGGACATGGGCGTGTGTCCAGGCC
GTGCAACACACTATTTATGATTTAAAACCACACGAGCAA
Found at i:8962108 original size:25 final size:25
Alignment explanation
Indices: 8962080--8962127 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
8962070 GCATTATTGC
*
8962080 TCTACTCTGTTCCA-TTCTGTTCTGT
1 TCTACTCTATT-CAGTTCTGTTCTGT
8962105 TCTACTCTATTCAGTTCTGTTCT
1 TCTACTCTATTCAGTTCTGTTCT
8962128 ATTTGAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 2 0.10
25 19 0.90
ACGTcount: A:0.10, C:0.27, G:0.10, T:0.52
Consensus pattern (25 bp):
TCTACTCTATTCAGTTCTGTTCTGT
Found at i:8964962 original size:19 final size:19
Alignment explanation
Indices: 8964938--8965012 Score: 129
Period size: 19 Copynumber: 4.1 Consensus size: 19
8964928 ATAATCTTCA
8964938 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
8964957 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
8964976 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
8964993 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
8965011 AT
1 AT
8965013 TGTAGACACT
Statistics
Matches: 54, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.30
18 13 0.24
19 25 0.46
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:8965223 original size:19 final size:19
Alignment explanation
Indices: 8965199--8965273 Score: 129
Period size: 19 Copynumber: 4.1 Consensus size: 19
8965189 ATAATCTTCA
8965199 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
8965218 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
8965237 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
8965254 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
8965272 AT
1 AT
8965274 TGTAGACACT
Statistics
Matches: 54, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.30
18 13 0.24
19 25 0.46
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:8965485 original size:19 final size:19
Alignment explanation
Indices: 8965461--8965535 Score: 129
Period size: 19 Copynumber: 4.1 Consensus size: 19
8965451 ATAATCTTCA
8965461 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
8965480 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
8965499 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
8965516 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
8965534 AT
1 AT
8965536 TGTAGACACT
Statistics
Matches: 54, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.30
18 13 0.24
19 25 0.46
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:8965497 original size:262 final size:261
Alignment explanation
Indices: 8964741--8965793 Score: 1966
Period size: 261 Copynumber: 4.0 Consensus size: 261
8964731 ACAATTGATT
* * *
8964741 TCTTAAATAGTTGTAGATACTCAATTTTGCCCGGGCCCAGAAATAAGTCCAAAAACAAAAATAAT
1 TCTTAGATA-TTGTAGACACTCAATTTTACCCGGGCCCAGAAATAAGTCCAAAAACAAAAATAAT
8964806 AAACCCAAAAAAAACGAAGTCCAAGTTCAATCCAGAATTACAAATAAGATTTGGCCCGATCGGAA
65 AAACCCAAAAAAAACGAAGTCCAAGTTCAATCCAGAATTACAAATAAGATTTGGCCCGATCGGAA
*
8964871 TGGCCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCGTATGGAAATATAATCTT
130 TGGCCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCATATGGAAATATAATCTT
8964936 CAATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGC
195 CAATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGC
8965001 AA
260 AA
*
8965003 TCTTAGATATTGTAGACACTCAATTTTGCCCGGGCCCAGAAATAAGTCCAAAAACAAAAATAATA
1 TCTTAGATATTGTAGACACTCAATTTTACCCGGGCCCAGAAATAAGTCCAAAAACAAAAATAATA
8965068 AACCCAAAAAAAACGAAGTCCAAGTTCAATCCAGAATTACAAATAAGATTTGGCCCGATCGGAAT
66 AACCCAAAAAAAACGAAGTCCAAGTTCAATCCAGAATTACAAATAAGATTTGGCCCGATCGGAAT
8965133 GGCCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCATATGGAAATATAATCTTC
131 GGCCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCATATGGAAATATAATCTTC
8965198 AATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCA
196 AATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCA
8965263 A
261 A
8965264 TCTTAGATATTGTAGACACTCAATTTTACCCGGGCCCAGAAATAAGTCCAAAAACAAAAATAATA
1 TCTTAGATATTGTAGACACTCAATTTTACCCGGGCCCAGAAATAAGTCCAAAAACAAAAATAATA
* *
8965329 AACCCAAAAAAAAACGAAGTCCAAGTTCAATCCAGAACTACAAATATGATTTGGCCCGATCGGAA
66 AACCC-AAAAAAAACGAAGTCCAAGTTCAATCCAGAATTACAAATAAGATTTGGCCCGATCGGAA
8965394 TGGCCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCATATGGAAATATAATCTT
130 TGGCCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCATATGGAAATATAATCTT
8965459 CAATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGC
195 CAATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGC
8965524 AA
260 AA
8965526 TCTTAGATATTGTAGACACTCAATTTTACCCGGGCCCAGAAATAAGTCCAAAAACAAAAATAATA
1 TCTTAGATATTGTAGACACTCAATTTTACCCGGGCCCAGAAATAAGTCCAAAAACAAAAATAATA
*
8965591 AACCCAAAAAAAACGAAGTCCAAGTTCAATCCAGAATTACAAATATGATTTGGCCCGATCGGAAT
66 AACCCAAAAAAAACGAAGTCCAAGTTCAATCCAGAATTACAAATAAGATTTGGCCCGATCGGAAT
*
8965656 GACCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCATATGGAAATATAATCTTC
131 GGCCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCATATGGAAATATAATCTTC
*
8965721 AATGATATGCAATCTTAGATATGATA--CAATCTTAGATATGATTGCAATCTTAGATATGATATG
196 AATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGA-TACAATCTTAGATATGAT-TG
8965784 CAA
259 CAA
8965787 TCTTAGA
1 TCTTAGA
8965794 AGATATGATT
Statistics
Matches: 779, Mismatches: 9, Indels: 7
0.98 0.01 0.01
Matches are distributed among these distances:
259 15 0.02
260 17 0.02
261 480 0.62
262 267 0.34
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (261 bp):
TCTTAGATATTGTAGACACTCAATTTTACCCGGGCCCAGAAATAAGTCCAAAAACAAAAATAATA
AACCCAAAAAAAACGAAGTCCAAGTTCAATCCAGAATTACAAATAAGATTTGGCCCGATCGGAAT
GGCCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCATATGGAAATATAATCTTC
AATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCA
A
Found at i:8965734 original size:523 final size:523
Alignment explanation
Indices: 8964741--8965793 Score: 1968
Period size: 523 Copynumber: 2.0 Consensus size: 523
8964731 ACAATTGATT
* * *
8964741 TCTTAAATAGTTGTAGATACTCAATTTTGCCCGGGCCCAGAAATAAGTCCAAAAACAAAAATAAT
1 TCTTAGATAGTTGTAGACACTCAATTTTACCCGGGCCCAGAAATAAGTCCAAAAACAAAAATAAT
*
8964806 AAACCCAAAAAAAACGAAGTCCAAGTTCAATCCAGAATTACAAATAAGATTTGGCCCGATCGGAA
66 AAACCCAAAAAAAACGAAGTCCAAGTTCAATCCAGAACTACAAATAAGATTTGGCCCGATCGGAA
*
8964871 TGGCCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCGTATGGAAATATAATCTT
131 TGGCCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCATATGGAAATATAATCTT
8964936 CAATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGC
196 CAATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGC
*
8965001 AATCTTAGATATTGTAGACACTCAATTTTGCCCGGGCCCAGAAATAAGTCCAAAAACAAAAATAA
261 AATCTTAGATATTGTAGACACTCAATTTTACCCGGGCCCAGAAATAAGTCCAAAAACAAAAATAA
8965066 TAAACCCAAAAAAAACGAAGTCCAAGTTCAATCCAGAATTACAAATAAGATTTGGCCCGATCGGA
326 TAAACCCAAAAAAAACGAAGTCCAAGTTCAATCCAGAATTACAAATAAGATTTGGCCCGATCGGA
*
8965131 ATGGCCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCATATGGAAATATAATCT
391 ATGACCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCATATGGAAATATAATCT
8965196 TCAATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGA-TACAATCTTAGATATGAT-
456 TCAATGATATGCAATCTTAGATATGATA--CAATCTTAGATATGATTACAATCTTAGATATGATA
8965259 TGCAA
519 TGCAA
8965264 TCTTAGATA-TTGTAGACACTCAATTTTACCCGGGCCCAGAAATAAGTCCAAAAACAAAAATAAT
1 TCTTAGATAGTTGTAGACACTCAATTTTACCCGGGCCCAGAAATAAGTCCAAAAACAAAAATAAT
*
8965328 AAACCCAAAAAAAAACGAAGTCCAAGTTCAATCCAGAACTACAAATATGATTTGGCCCGATCGGA
66 AAACCC-AAAAAAAACGAAGTCCAAGTTCAATCCAGAACTACAAATAAGATTTGGCCCGATCGGA
8965393 ATGGCCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCATATGGAAATATAATCT
130 ATGGCCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCATATGGAAATATAATCT
8965458 TCAATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTG
195 TCAATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTG
8965523 CAATCTTAGATATTGTAGACACTCAATTTTACCCGGGCCCAGAAATAAGTCCAAAAACAAAAATA
260 CAATCTTAGATATTGTAGACACTCAATTTTACCCGGGCCCAGAAATAAGTCCAAAAACAAAAATA
*
8965588 ATAAACCCAAAAAAAACGAAGTCCAAGTTCAATCCAGAATTACAAATATGATTTGGCCCGATCGG
325 ATAAACCCAAAAAAAACGAAGTCCAAGTTCAATCCAGAATTACAAATAAGATTTGGCCCGATCGG
8965653 AATGACCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCATATGGAAATATAATC
390 AATGACCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCATATGGAAATATAATC
*
8965718 TTCAATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGATATGATAT
455 TTCAATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTACAATCTTAGATATGATAT
8965783 GCAA
520 GCAA
8965787 TCTTAGA
1 TCTTAGA
8965794 AGATATGATT
Statistics
Matches: 517, Mismatches: 10, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
521 15 0.03
522 76 0.15
523 426 0.82
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (523 bp):
TCTTAGATAGTTGTAGACACTCAATTTTACCCGGGCCCAGAAATAAGTCCAAAAACAAAAATAAT
AAACCCAAAAAAAACGAAGTCCAAGTTCAATCCAGAACTACAAATAAGATTTGGCCCGATCGGAA
TGGCCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCATATGGAAATATAATCTT
CAATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGC
AATCTTAGATATTGTAGACACTCAATTTTACCCGGGCCCAGAAATAAGTCCAAAAACAAAAATAA
TAAACCCAAAAAAAACGAAGTCCAAGTTCAATCCAGAATTACAAATAAGATTTGGCCCGATCGGA
ATGACCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCATATGGAAATATAATCT
TCAATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTACAATCTTAGATATGATATG
CAA
Found at i:8965743 original size:14 final size:15
Alignment explanation
Indices: 8965724--8965779 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
8965714 AATCTTCAAT
8965724 GATATG-CAATCTTA
1 GATATGACAATCTTA
8965738 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
8965755 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
8965773 GATATGA
1 GATATGA
8965780 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:8965768 original size:35 final size:37
Alignment explanation
Indices: 8965722--8965800 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
8965712 ATAATCTTCA
8965722 ATGATATGCAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
8965758 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATA-GCAATCTTAGAT
8965794 A-GATATG
1 ATGATATG
8965801 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
Found at i:8965800 original size:17 final size:19
Alignment explanation
Indices: 8965722--8965793 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
8965712 ATAATCTTCA
8965722 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
8965741 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
8965758 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
8965776 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
8965794 AGATATGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:8965819 original size:22 final size:22
Alignment explanation
Indices: 8965722--8965816 Score: 79
Period size: 17 Copynumber: 4.8 Consensus size: 22
8965712 ATAATCTTCA
8965722 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
8965741 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
8965758 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
8965776 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
8965798 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
8965817 GATTTAATTT
Statistics
Matches: 67, Mismatches: 2, Indels: 10
0.85 0.03 0.13
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 15 0.22
22 8 0.12
23 12 0.18
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:8965826 original size:22 final size:22
Alignment explanation
Indices: 8965785--8965830 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
8965775 TATGATATGC
*
8965785 AATCTTAGAAGATATGATTTTGT
1 AATCTTAGAAGATAT-AATTTGT
*
8965808 AATCTTAG-AGATTTAATTTGT
1 AATCTTAGAAGATATAATTTGT
8965829 AA
1 AA
8965831 AAACCTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 8 0.38
22 5 0.24
23 8 0.38
ACGTcount: A:0.37, C:0.04, G:0.15, T:0.43
Consensus pattern (22 bp):
AATCTTAGAAGATATAATTTGT
Found at i:8965829 original size:21 final size:23
Alignment explanation
Indices: 8965772--8965830 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 23
8965762 TTGCAATCTT
* *
8965772 AGATATG-ATATGCAATCTTAGA
1 AGATATGAATTTGTAATCTTAGA
*
8965794 AGATATGATTTTGTAATCTTAG-
1 AGATATGAATTTGTAATCTTAGA
*
8965816 AGAT-TTAATTTGTAA
1 AGATATGAATTTGTAA
8965831 AAACCTTTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 9 0.29
22 11 0.35
23 11 0.35
ACGTcount: A:0.37, C:0.05, G:0.17, T:0.41
Consensus pattern (23 bp):
AGATATGAATTTGTAATCTTAGA
Found at i:8966108 original size:18 final size:17
Alignment explanation
Indices: 8966085--8966118 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
8966075 TTTCCCTGAT
*
8966085 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
8966103 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
8966119 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:8968636 original size:26 final size:26
Alignment explanation
Indices: 8968600--8968709 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
8968590 TGATACAAAT
8968600 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
8968626 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
8968652 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
8968678 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
8968704 TGATAA
1 TGATAA
8968710 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:8970548 original size:27 final size:26
Alignment explanation
Indices: 8970444--8970558 Score: 122
Period size: 27 Copynumber: 4.3 Consensus size: 26
8970434 TGGAGGAAGC
* * *
8970444 GTTCTGGTGGCTATTCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
**
8970471 AATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACAT-TATCT
*
8970498 GTTCTAGTGGCTCTGCCACGATTATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
* *
8970525 GTATCTGGTGACTCTGTCACATTATCT
1 GT-TCTGGTGGCTCTGCCACATTATCT
8970552 GTTCTGG
1 GTTCTGG
8970559 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.70
28 16 0.22
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACATTATCT
Found at i:8973330 original size:14 final size:14
Alignment explanation
Indices: 8973311--8973342 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
8973301 AGGTCATTTA
8973311 GCCCAACCAAACGG
1 GCCCAACCAAACGG
*
8973325 GCCCAACCAAACTG
1 GCCCAACCAAACGG
8973339 GCCC
1 GCCC
8973343 GGTGATTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.31, C:0.47, G:0.19, T:0.03
Consensus pattern (14 bp):
GCCCAACCAAACGG
Found at i:8990030 original size:48 final size:47
Alignment explanation
Indices: 8989945--8990042 Score: 162
Period size: 48 Copynumber: 2.1 Consensus size: 47
8989935 CAGCATGAAA
*
8989945 TTTTCCCTATATATATATTTTTTTATTTGTGAGTTTGG-TTTTTTCT
1 TTTTCCCTACATATATATTTTTTTATTTGTGAGTTTGGTTTTTTTCT
8989991 TTNTTCCCTACATATATATATTTTTTATTTGTGAGTTTGGTTTTTTTCT
1 TT-TTCCCTACATATATAT-TTTTTTATTTGTGAGTTTGGTTTTTTTCT
8990040 TTT
1 TTT
8990043 GTACAGTGAG
Statistics
Matches: 48, Mismatches: 1, Indels: 4
0.91 0.02 0.08
Matches are distributed among these distances:
46 2 0.04
47 15 0.31
48 21 0.44
49 10 0.21
ACGTcount: A:0.15, C:0.09, G:0.10, T:0.64
Consensus pattern (47 bp):
TTTTCCCTACATATATATTTTTTTATTTGTGAGTTTGGTTTTTTTCT
Found at i:8991725 original size:3 final size:3
Alignment explanation
Indices: 8991717--8991751 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
8991707 GATAGTAAGC
*
8991717 TTA TTA TTA TTA TTA TTA TTA TTA TCTA ATA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA T
8991752 CTAATTTTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 27 0.93
4 2 0.07
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:9000814 original size:9 final size:9
Alignment explanation
Indices: 9000797--9000853 Score: 62
Period size: 9 Copynumber: 6.2 Consensus size: 9
9000787 ATCATATAGC
9000797 AAAAA-AAA
1 AAAAAGAAA
9000805 AAAAAGAAA
1 AAAAAGAAA
*
9000814 AGAAAGAAA
1 AAAAAGAAA
*
9000823 GAAAAGACAA
1 AAAAAGA-AA
*
9000833 AAAAATAAA
1 AAAAAGAAA
9000842 AATAAAGAAA
1 AA-AAAGAAA
9000852 AA
1 AA
9000854 GGAAAATCTG
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
8 5 0.12
9 20 0.50
10 15 0.38
ACGTcount: A:0.84, C:0.02, G:0.11, T:0.04
Consensus pattern (9 bp):
AAAAAGAAA
Found at i:9002140 original size:21 final size:22
Alignment explanation
Indices: 9002116--9002157 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
9002106 ATTATATTCA
*
9002116 TATAA-CTTCTTTATCCGAAAC
1 TATAATCTTCTTTATACGAAAC
*
9002137 TATAATTTTCTTTATACGAAA
1 TATAATCTTCTTTATACGAAA
9002158 TAAAAAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.36, C:0.17, G:0.05, T:0.43
Consensus pattern (22 bp):
TATAATCTTCTTTATACGAAAC
Found at i:9003645 original size:3 final size:3
Alignment explanation
Indices: 9003637--9003680 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
9003627 TGGAAAAGGC
9003637 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
9003681 AGAAAGAAAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:9004304 original size:42 final size:42
Alignment explanation
Indices: 9004258--9004344 Score: 156
Period size: 42 Copynumber: 2.1 Consensus size: 42
9004248 ACATCCTTCT
9004258 TTTGAAGTATTCCACAACCCCCAAATCTCCCTTTTCACACTC
1 TTTGAAGTATTCCACAACCCCCAAATCTCCCTTTTCACACTC
* *
9004300 TTTGAAGTATTCCACAACCCCCTAATCTCCCTTTTCACTCTC
1 TTTGAAGTATTCCACAACCCCCAAATCTCCCTTTTCACACTC
9004342 TTT
1 TTT
9004345 CCTTTCTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.23, C:0.37, G:0.05, T:0.36
Consensus pattern (42 bp):
TTTGAAGTATTCCACAACCCCCAAATCTCCCTTTTCACACTC
Found at i:9006503 original size:27 final size:24
Alignment explanation
Indices: 9006455--9006506 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 24
9006445 TATTTCCAAA
*
9006455 ATAAATAATAAATAAAATATAAGT
1 ATAAATAATAAATAAAACATAAGT
9006479 ATAAATAATATAATTAAGAACATAAGT
1 ATAAATAATA-AA-TAA-AACATAAGT
9006506 A
1 A
9006507 GCATCTTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 10 0.42
25 2 0.08
26 3 0.12
27 9 0.38
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (24 bp):
ATAAATAATAAATAAAACATAAGT
Found at i:9006848 original size:3 final size:3
Alignment explanation
Indices: 9006840--9006869 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
9006830 GAGTTGTGTT
9006840 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
9006870 AAAAAATGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:9007864 original size:22 final size:21
Alignment explanation
Indices: 9007829--9007903 Score: 66
Period size: 22 Copynumber: 3.6 Consensus size: 21
9007819 AAAAGGTATC
* *
9007829 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
9007850 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
9007873 TTCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
9007892 TGC-AATCATATC
1 TACAAATCATATC
9007904 GCATATCATA
Statistics
Matches: 44, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
18 6 0.14
19 10 0.23
21 3 0.07
22 15 0.34
23 10 0.23
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:9007889 original size:19 final size:19
Alignment explanation
Indices: 9007857--9007903 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
9007847 GATTACAAAA
9007857 TCATATC-T-TCTAAGATT
1 TCATATCATATCTAAGATT
9007874 TCATATCATATCTAAGATT
1 TCATATCATATCTAAGATT
*
9007893 GCA-ATCATATC
1 TCATATCATATC
9007904 GCATATCATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 7 0.26
18 9 0.33
19 11 0.41
ACGTcount: A:0.34, C:0.19, G:0.06, T:0.40
Consensus pattern (19 bp):
TCATATCATATCTAAGATT
Found at i:9007985 original size:22 final size:23
Alignment explanation
Indices: 9007960--9008004 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
9007950 AGGTATCTAC
*
9007960 AAATTAAATC-TCTAAGATTGCA
1 AAATCAAATCTTCTAAGATTGCA
*
9007982 AAATCATATCTTCTAAGATTGCA
1 AAATCAAATCTTCTAAGATTGCA
9008005 TATCATATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.33
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTGCA
Found at i:9008000 original size:23 final size:22
Alignment explanation
Indices: 9007970--9008031 Score: 78
Period size: 19 Copynumber: 3.0 Consensus size: 22
9007960 AAATTAAATC
9007970 TCTAAGATTGCAAAATCATATCT
1 TCTAAGATTGC-AAATCATATCT
*
9007993 TCTAAGATTGCATATCATA---
1 TCTAAGATTGCAAATCATATCT
9008012 TCTAAGATTGC-AATCATATC
1 TCTAAGATTGCAAATCATATC
9008032 GCATATCATA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
18 6 0.17
19 11 0.31
22 7 0.20
23 11 0.31
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (22 bp):
TCTAAGATTGCAAATCATATCT
Found at i:9008024 original size:128 final size:128
Alignment explanation
Indices: 9007796--9008055 Score: 502
Period size: 128 Copynumber: 2.0 Consensus size: 128
9007786 CGGTACAGAT
9007796 CAATTACATCAACGGTTAAGATTAAAAGGTATCTACAAATTAAATCTCTAAGATTACAAAATCAT
1 CAATTACATCAACGGTTAAGATTAAAAGGTATCTACAAATTAAATCTCTAAGATTACAAAATCAT
*
9007861 ATCTTCTAAGATTTCATATCATATCTAAGATTGCAATCATATCGCATATCATATCTAAGATTG
66 ATCTTCTAAGATTGCATATCATATCTAAGATTGCAATCATATCGCATATCATATCTAAGATTG
*
9007924 CAATTACATCAACGGTTAAGATTAAAAGGTATCTACAAATTAAATCTCTAAGATTGCAAAATCAT
1 CAATTACATCAACGGTTAAGATTAAAAGGTATCTACAAATTAAATCTCTAAGATTACAAAATCAT
9007989 ATCTTCTAAGATTGCATATCATATCTAAGATTGCAATCATATCGCATATCATATCTAAGATTG
66 ATCTTCTAAGATTGCATATCATATCTAAGATTGCAATCATATCGCATATCATATCTAAGATTG
9008052 CAAT
1 CAAT
9008056 CATATCGCAT
Statistics
Matches: 130, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
128 130 1.00
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (128 bp):
CAATTACATCAACGGTTAAGATTAAAAGGTATCTACAAATTAAATCTCTAAGATTACAAAATCAT
ATCTTCTAAGATTGCATATCATATCTAAGATTGCAATCATATCGCATATCATATCTAAGATTG
Found at i:9008038 original size:30 final size:30
Alignment explanation
Indices: 9008002--9008089 Score: 167
Period size: 30 Copynumber: 2.9 Consensus size: 30
9007992 TTCTAAGATT
9008002 GCATATCATATCTAAGATTGCAATCATATC
1 GCATATCATATCTAAGATTGCAATCATATC
9008032 GCATATCATATCTAAGATTGCAATCATATC
1 GCATATCATATCTAAGATTGCAATCATATC
9008062 GCATATCATATCTAAGATTGCATATCAT
1 GCATATCATATCTAAGATTGCA-ATCAT
9008090 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
30 52 0.91
31 5 0.09
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.34
Consensus pattern (30 bp):
GCATATCATATCTAAGATTGCAATCATATC
Found at i:9008524 original size:45 final size:45
Alignment explanation
Indices: 9008439--9008637 Score: 258
Period size: 45 Copynumber: 4.5 Consensus size: 45
9008429 GGAAGGCGAT
* * *
9008439 ATCTGCTATCTTTGATCTGCT-CCCGTCTAATACAGAGACGCGAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
9008483 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * *
9008528 ATTTGCT-TCTTCAATCTGCTCCCCGTCTAAAACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * *
9008572 ATCTGTTATCTCCGATTTGCTCCCCGTCTAATACAAAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
9008617 ATCTGTCATCTTGGATCTGCT
1 ATCTGTTATCTTCGATCTGCT
9008638 TCGATGTAAA
Statistics
Matches: 134, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
44 58 0.43
45 76 0.57
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.31
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:9008616 original size:89 final size:88
Alignment explanation
Indices: 9008453--9008618 Score: 260
Period size: 89 Copynumber: 1.9 Consensus size: 88
9008443 GCTATCTTTG
* * *
9008453 ATCTGCTCCCGTCTAATACAGAGACGCGAAATCTGTTATCTTCGATCTGCTCCCCGTCTAATACA
1 ATCTGCTCCCGTCTAAAACAGAGACGCCAAATCTGTTATCTCCGATCTGCTCCCCGTCTAATACA
*
9008518 GAGACGCCAAATTTGCTTCTTCA
66 AAGACGCCAAATTTGCTTCTTCA
* *
9008541 ATCTGCTCCCCGTCTAAAACAGAGATGCCAAATCTGTTATCTCCGATTTGCTCCCCGTCTAATAC
1 ATCTGCT-CCCGTCTAAAACAGAGACGCCAAATCTGTTATCTCCGATCTGCTCCCCGTCTAATAC
*
9008606 AAAGATGCCAAAT
65 AAAGACGCCAAAT
9008619 CTGTCATCTT
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
88 7 0.10
89 63 0.90
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (88 bp):
ATCTGCTCCCGTCTAAAACAGAGACGCCAAATCTGTTATCTCCGATCTGCTCCCCGTCTAATACA
AAGACGCCAAATTTGCTTCTTCA
Found at i:9008787 original size:44 final size:44
Alignment explanation
Indices: 9008735--9008921 Score: 116
Period size: 44 Copynumber: 4.2 Consensus size: 44
9008725 TTATTCCTTA
*
9008735 TAAACACAGGGATGCCATGCTGAAAT-TTTCAATCTGCTTCGCTG
1 TAAACACAGGGATGCCATGCTGAAATCTTTCAATCTG-TTCCCTG
* * * ** * *
9008779 TAAGCACAGGAATGTCA-GATCTGCTATGTCTTCGATCTGTTCCCTG
1 TAAACACAGGGATGCCATG--CTGAAATCT-TTCAATCTGTTCCCTG
** *
9008825 TAAACACAGGGATGCCAAAT-CTGCTATC-TTCAA-CTTGTTCCCTA
1 TAAACACAGGGATGCC--ATGCTGAAATCTTTCAATC-TGTTCCCTG
* * * *
9008869 TAAACACAGGGATGCCATGTTAAAATCTTT-GATCTGCTTCGCTG
1 TAAACACAGGGATGCCATGCTGAAATCTTTCAATCTG-TTCCCTG
*
9008913 TAAGCACAG
1 TAAACACAG
9008922 AAGTGTCAGA
Statistics
Matches: 110, Mismatches: 21, Indels: 24
0.71 0.14 0.15
Matches are distributed among these distances:
42 2 0.02
43 9 0.08
44 58 0.53
45 5 0.05
46 27 0.25
47 8 0.07
48 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (44 bp):
TAAACACAGGGATGCCATGCTGAAATCTTTCAATCTGTTCCCTG
Found at i:9008807 original size:135 final size:133
Alignment explanation
Indices: 9008631--9008979 Score: 468
Period size: 134 Copynumber: 2.6 Consensus size: 133
9008621 GTCATCTTGG
* * * * ** * * *
9008631 ATCTGCTTCGATGTAAACACATGAAGGTCAGATCTACTATGTCTTTAATCTGCTCCCTGTCGAAT
1 ATCTGCTTCGCTGTAAGCACA-GAATGTCAGATCTGCTATGTCTTCGATCTGTTCCCTGT-AAAC
* * *
9008696 A-TGGAGATGCCAAATCTACTATCTTCAACTTATTCCTTATAAACACAGGGATGCCATGCTGAAA
64 ACAGG-GATGCCAAATCTACTATCTTCAACTTATTCCCTATAAACACAGGGATGCCATGCTAAAA
9008760 T-TTTCA
128 TCTTT-A
9008766 ATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATGTCTTCGATCTGTTCCCTGTAAACA
1 ATCTGCTTCGCTGTAAGCACA-GAATGTCAGATCTGCTATGTCTTCGATCTGTTCCCTGTAAACA
* * *
9008831 CAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGTTAAAATC
65 CAGGGATGCCAAATCTACTATCTTCAACTTATTCCCTATAAACACAGGGATGCCATGCTAAAATC
*
9008896 TTTG
130 TTTA
9008900 ATCTGCTTCGCTGTAAGCACAGAAGTGTCAGATCTGCTATGTCTTCGATCTGTTCCCTGTAAACA
1 ATCTGCTTCGCTGTAAGCACAGAA-TGTCAGATCTGCTATGTCTTCGATCTGTTCCCTGTAAACA
* *
9008965 TAGGAATGCCAAATC
65 CAGGGATGCCAAATC
9008980 ATCTTGGATC
Statistics
Matches: 192, Mismatches: 19, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
133 3 0.02
134 132 0.69
135 57 0.30
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.32
Consensus pattern (133 bp):
ATCTGCTTCGCTGTAAGCACAGAATGTCAGATCTGCTATGTCTTCGATCTGTTCCCTGTAAACAC
AGGGATGCCAAATCTACTATCTTCAACTTATTCCCTATAAACACAGGGATGCCATGCTAAAATCT
TTA
Found at i:9008827 original size:46 final size:46
Alignment explanation
Indices: 9008766--9008975 Score: 175
Period size: 44 Copynumber: 4.6 Consensus size: 46
9008756 GAAATTTTCA
* * *
9008766 ATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATGTCTTCG
1 ATCTG-TTCCCTGTAAACACAGGAATGCCAGATCTGCTATGTCTTCG
* *
9008813 ATCTGTTCCCTGTAAACACAGGGATGCCAAATCTGCTA--TCTTC-
1 ATCTGTTCCCTGTAAACACAGGAATGCCAGATCTGCTATGTCTTCG
* * * * ** *
9008856 AACTTGTTCCCTATAAACACAGGGATGCCATG-T-T--AAAATCTTTG
1 ATC-TGTTCCCTGTAAACACAGGAATGCCA-GATCTGCTATGTCTTCG
* * *
9008900 ATCTGCTTCGCTGTAAGCACA-GAAGTGTCAGATCTGCTATGTCTTCG
1 ATCTG-TTCCCTGTAAACACAGGAA-TGCCAGATCTGCTATGTCTTCG
*
9008947 ATCTGTTCCCTGTAAACATAGGAATGCCA
1 ATCTGTTCCCTGTAAACACAGGAATGCCA
9008976 AATCATCTTG
Statistics
Matches: 127, Mismatches: 24, Indels: 25
0.72 0.14 0.14
Matches are distributed among these distances:
41 1 0.01
43 12 0.09
44 50 0.39
45 1 0.01
46 44 0.35
47 19 0.15
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.31
Consensus pattern (46 bp):
ATCTGTTCCCTGTAAACACAGGAATGCCAGATCTGCTATGTCTTCG
Found at i:9009089 original size:44 final size:44
Alignment explanation
Indices: 9009027--9009733 Score: 598
Period size: 44 Copynumber: 16.0 Consensus size: 44
9009017 AATATGTTGT
* * * *
9009027 TCTTCT-T-TTCGATATGCTCTCTGACAAAACAGAGACGCCAAA
1 TCTTCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAA
9009069 TCTTCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAA
1 TCTTCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAA
* *
9009113 TCTAT-TATCTTCGATCTGCTCTCTGCCAATACAGAAATGTCAAA
1 TCT-TCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAA
9009157 TCTGT-TATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAA
1 TCT-TCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAA
** *
9009201 TCAGCTATGTCTTTGATCTGCTCT-TCGCCGAATACAGAGATGCCAAA
1 TCTTCTA--TCTTCGATCTGCTCTCT-GCC-AATACAGAGATGCCAAA
* *
9009248 TCTGTC-ATCTTTGATCTGCTCTATGCCAATACAGAGATGCCAAA
1 TCT-TCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAA
* * *
9009292 TCTGCTATCTTTGATCTGCTCTCTGCCAATACAAAGATGCCAAA
1 TCTTCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAA
* ** * * *
9009336 ---TC-ATCTTAGA-CTTGCT-TCAACGTAA-ACACGTGGAAGCCAAA
1 TCTTCTATCTTCGATC-TGCTCTCTGC-CAATACA-G-AGATGCCAAA
** * *
9009377 TCAGCTATGTCTTCGATCTGCTCTCCGCCGAATATAGAGATGCCAAA
1 TCTTCTA--TCTTCGATCTGCTCTCTGCC-AATACAGAGATGCCAAA
* *
9009424 TCTGTC-ATCTTTGATCTGCTCTCTACCAATACAGAGATGCCAAA
1 TCT-TCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAA
*
9009468 TCTGT-TATCTTCGATCTGCTCTCTACCAATACAGAGATGCCAAA
1 TCT-TCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAA
* *
9009512 TCTGCTATCTTCGATCTGCTCTCTACCAATACAGAGATGCCAAA
1 TCTTCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAA
* ** * * * **
9009556 ---TC-ATCTTAGA-CTTGCT-TCAACGTAA-ACACGTGGAAGCTGAA
1 TCTTCTATCTTCGATC-TGCTCTCTGC-CAATACA-G-AGATGCCAAA
** * *
9009597 TCAGCTATGTCTTCGATCTACTCTCCGCCAAATACAGAGATGCCAAA
1 TCTTCTA--TCTTCGATCTGCTCTCTGCC-AATACAGAGATGCCAAA
* **
9009644 TCTGTC-ATCTTCGATCTGCTCTCTGCCAATACAAAGACACCAAA
1 TCT-TCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAA
** *
9009688 TCTGT-TGCCTTCGATCTGCTCTCTGCCAATATAGAGATGCCAAA
1 TCT-TCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAA
9009732 TC
1 TC
9009734 ATCTTGGATC
Statistics
Matches: 549, Mismatches: 72, Indels: 86
0.78 0.10 0.12
Matches are distributed among these distances:
39 15 0.03
40 27 0.05
41 16 0.03
42 6 0.01
43 2 0.00
44 327 0.60
45 57 0.10
46 18 0.03
47 59 0.11
48 17 0.03
49 5 0.01
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (44 bp):
TCTTCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAA
Found at i:9009429 original size:176 final size:176
Alignment explanation
Indices: 9009055--9009558 Score: 660
Period size: 176 Copynumber: 2.8 Consensus size: 176
9009045 CTCTGACAAA
* * *
9009055 ACAGAGACGCCAAATCT-TCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTATT
1 ACAGAGATGCCAAATCTGTC-ATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTT
* * **
9009119 ATCTTCGATCTGCTCTCTGCCAATACAGAA-ATGTCAAATCTGTTATCTTCGATCTGCTCTCTGC
65 ATCTTCGATCTGCTCTCTGCCAATACA-AAGATGCCAAATC---TATCTTAGATCTGCTCTCAAC
* * *
9009183 CAATACAGAGATGCCAAATCAGCTATGTCTTTGATCTGCTCTTCGCCGAAT
126 CAATACAGAGAAGCCAAATCAGCTATGTCTTCGATCTGCTCTCCGCCGAAT
* *
9009234 ACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTATGCCAATACAGAGATGCCAAATCTGCTA
1 ACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTTA
* *
9009299 TCTTTGATCTGCTCTCTGCCAATACAAAGATGCCAAATC-ATCTTAGA-CTTGCT-TCAACGTAA
66 TCTTCGATCTGCTCTCTGCCAATACAAAGATGCCAAATCTATCTTAGATC-TGCTCTCAAC-CAA
*
9009361 -ACACGTGGAAGCCAAATCAGCTATGTCTTCGATCTGCTCTCCGCCGAAT
129 TACA-G-AGAAGCCAAATCAGCTATGTCTTCGATCTGCTCTCCGCCGAAT
* *
9009410 ATAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTACCAATACAGAGATGCCAAATCTGTTA
1 ACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTTA
* * * *
9009475 TCTTCGATCTGCTCTCTACCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTACCA
66 TCTTCGATCTGCTCTCTGCCAATACAAAGATGCCAAA--T-CTATCTTAGATCTGCTCTCAACCA
*
9009540 ATACAGAGATGCCAAATCA
128 ATACAGAGAAGCCAAATCA
9009559 TCTTAGACTT
Statistics
Matches: 285, Mismatches: 27, Indels: 26
0.84 0.08 0.08
Matches are distributed among these distances:
174 7 0.02
175 14 0.05
176 134 0.47
178 3 0.01
179 103 0.36
180 16 0.06
181 8 0.03
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (176 bp):
ACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTTA
TCTTCGATCTGCTCTCTGCCAATACAAAGATGCCAAATCTATCTTAGATCTGCTCTCAACCAATA
CAGAGAAGCCAAATCAGCTATGTCTTCGATCTGCTCTCCGCCGAAT
Found at i:9009517 original size:220 final size:219
Alignment explanation
Indices: 9009034--9009733 Score: 878
Period size: 220 Copynumber: 3.2 Consensus size: 219
9009024 TGTTCTTCTT
* * * * * *
9009034 TTCGATATGCTCTCTGACAAAACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGCCAAT
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTACCAAT
* * ** * * *
9009099 ACAGAGATGCCAAATCTATTATCTTCGA-TCTGCTCTCTGC-CAATACA---GAAATGTCAAATC
66 ACAAAGATGCCAAATC----ATCTTAGACT-TGCT-TCAACGTAA-ACACGTGGAA-GCCAAATC
* * * *
9009159 TG-T-TATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCAG-CTATGTCTTTGATCTG
123 AGCTATGTCTTCGATCTGCTCTCCGCCAATACAGAGATGCCAAATCTGTC-A--TCTTTGATCTG
*
9009221 CTCT-TCGCCGAATACAGAGATGCCAAATCTGTCATC
185 CTCTCT-GCC-AATACAGAGATGCCAAATCTGTTATC
* * * *
9009257 TTTGATCTGCTCTATGCCAATACAGAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGCCAAT
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTACCAAT
9009322 ACAAAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGGAAGCCAAATCAGCTATGT
66 ACAAAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGGAAGCCAAATCAGCTATGT
* *
9009387 CTTCGATCTGCTCTCCGCCGAATATAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTACCA
131 CTTCGATCTGCTCTCCGCC-AATACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGCCA
9009452 ATACAGAGATGCCAAATCTGTTATC
195 ATACAGAGATGCCAAATCTGTTATC
*
9009477 TTCGATCTGCTCTCTACCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTACCAAT
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTACCAAT
* **
9009542 ACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGGAAGCTGAATCAGCTATGT
66 ACAAAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGGAAGCCAAATCAGCTATGT
* *
9009607 CTTCGATCTACTCTCCGCCAAATACAGAGATGCCAAATCTGTCATCTTCGATCTGCTCTCTGCCA
131 CTTCGATCTGCTCTCCGCC-AATACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGCCA
* ** **
9009672 ATACAAAGACACCAAATCTGTTGCC
195 ATACAGAGATGCCAAATCTGTTATC
*
9009697 TTCGATCTGCTCTCTGCCAATATAGAGATGCCAAATC
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATC
9009734 ATCTTGGATC
Statistics
Matches: 425, Mismatches: 42, Indels: 23
0.87 0.09 0.05
Matches are distributed among these distances:
218 6 0.01
219 13 0.03
220 271 0.64
221 21 0.05
222 21 0.05
223 92 0.22
224 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (219 bp):
TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTACCAAT
ACAAAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGGAAGCCAAATCAGCTATGT
CTTCGATCTGCTCTCCGCCAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGCCAA
TACAGAGATGCCAAATCTGTTATC
Found at i:9015597 original size:22 final size:23
Alignment explanation
Indices: 9015572--9015616 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
9015562 AGGTATCTAC
*
9015572 AAATTAAATC-TCTAAGATTGCA
1 AAATCAAATCTTCTAAGATTGCA
*
9015594 AAATCATATCTTCTAAGATTGCA
1 AAATCAAATCTTCTAAGATTGCA
9015617 TATCATATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.33
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTGCA
Found at i:9015629 original size:19 final size:19
Alignment explanation
Indices: 9015582--9015671 Score: 79
Period size: 19 Copynumber: 4.9 Consensus size: 19
9015572 AAATTAAATC
*
9015582 TCTAAGATTGCAAAATCATA
1 TCTAAGATTGC-ATATCATA
9015602 TCTTCTAAGATTGCATATCATA
1 ---TCTAAGATTGCATATCATA
9015624 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
9015642 TC-------GCATATCATA
1 TCTAAGATTGCATATCATA
9015654 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
9015672 TGAAGATTAT
Statistics
Matches: 58, Mismatches: 1, Indels: 20
0.73 0.01 0.25
Matches are distributed among these distances:
11 3 0.05
12 8 0.14
18 8 0.14
19 21 0.36
22 7 0.12
23 11 0.19
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:9015650 original size:30 final size:31
Alignment explanation
Indices: 9015614--9015671 Score: 109
Period size: 30 Copynumber: 1.9 Consensus size: 31
9015604 TTCTAAGATT
9015614 GCATATCATATCTAAGATTGCA-ATCATATC
1 GCATATCATATCTAAGATTGCATATCATATC
9015644 GCATATCATATCTAAGATTGCATATCAT
1 GCATATCATATCTAAGATTGCATATCAT
9015672 TGAAGATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.34
Consensus pattern (31 bp):
GCATATCATATCTAAGATTGCATATCATATC
Found at i:9016472 original size:28 final size:28
Alignment explanation
Indices: 9016416--9016472 Score: 64
Period size: 28 Copynumber: 2.0 Consensus size: 28
9016406 GATGAGAGGG
**
9016416 GAGTAAAAGTTGGAGGGAAAGTGGGAGA
1 GAGTAAAAGTTGGAGGGAAAGTGAAAGA
9016444 GAGTAAAAGTTTTGG-GGGAAAGT-AAAGA
1 GAGTAAAAG--TTGGAGGGAAAGTGAAAGA
9016472 G
1 G
9016473 GTTTGGGAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
28 13 0.52
29 8 0.32
30 4 0.16
ACGTcount: A:0.40, C:0.00, G:0.42, T:0.18
Consensus pattern (28 bp):
GAGTAAAAGTTGGAGGGAAAGTGAAAGA
Done.