Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56482370
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1659275 characters in sequence are not A, C, G, or T
File 36 of 172
Found at i:11270675 original size:21 final size:21
Alignment explanation
Indices: 11270638--11270678 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
11270628 AAAAAATAAA
11270638 AAAAATAAAATTAAGAATTTGG
1 AAAAATAAAA-TAAGAATTTGG
11270660 AAAAATAAAA-ACAGAATTT
1 AAAAATAAAATA-AGAATTT
11270679 AAAGTGAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.06
21 7 0.39
22 10 0.56
ACGTcount: A:0.63, C:0.02, G:0.10, T:0.24
Consensus pattern (21 bp):
AAAAATAAAATAAGAATTTGG
Found at i:11271456 original size:10 final size:10
Alignment explanation
Indices: 11271441--11271486 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
11271431 ATTCTAAAAT
11271441 ATAAATACAA-
1 ATAAATA-AAG
11271451 ATAAATAAAG
1 ATAAATAAAG
*
11271461 ATAATTAAAG
1 ATAAATAAAG
11271471 ATAAATGAAA-
1 ATAAAT-AAAG
11271481 ATAAAT
1 ATAAAT
11271487 CCTAGAATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 2 0.06
10 27 0.84
11 3 0.09
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.24
Consensus pattern (10 bp):
ATAAATAAAG
Found at i:11272664 original size:3 final size:3
Alignment explanation
Indices: 11272656--11272680 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
11272646 TTTTTAAAAC
11272656 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
11272681 TTCAATGGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:11273077 original size:18 final size:18
Alignment explanation
Indices: 11273030--11273078 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
11273020 AGAAAATAAT
11273030 TATATTACAAA-T-AAATA
1 TATATTA-AAATTAAAATA
11273047 -ATA-TAAAATTTAAAATA
1 TATATTAAAA-TTAAAATA
11273064 TATATTAAAATTAAA
1 TATATTAAAATTAAA
11273079 TAAAAAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 9
0.75 0.00 0.25
Matches are distributed among these distances:
14 3 0.11
15 2 0.07
16 4 0.15
17 5 0.19
18 8 0.30
19 5 0.19
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (18 bp):
TATATTAAAATTAAAATA
Found at i:11275161 original size:26 final size:25
Alignment explanation
Indices: 11275102--11275161 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 25
11275092 ATTTTCTATC
*
11275102 TAGTTTTA--ATTTTAATCCTTACT
1 TAGTTTTATTATTTTAATCCTTAAT
11275125 TA-TTATCTATTATTTTAATCCTTAAT
1 TAGTT-T-TATTATTTTAATCCTTAAT
11275151 TCAGTTTTATT
1 T-AGTTTTATT
11275162 CCTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
22 2 0.07
23 3 0.10
24 2 0.07
26 19 0.63
27 2 0.07
28 2 0.07
ACGTcount: A:0.27, C:0.12, G:0.03, T:0.58
Consensus pattern (25 bp):
TAGTTTTATTATTTTAATCCTTAAT
Found at i:11275287 original size:16 final size:17
Alignment explanation
Indices: 11275266--11275306 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
11275256 TTATATTATA
11275266 TATTATAA-AATTATTT
1 TATTATAAGAATTATTT
*
11275282 TATTATAAGTATTATTT
1 TATTATAAGAATTATTT
11275299 TAATTATA
1 T-ATTATA
11275307 TATTATTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.36
17 8 0.36
18 6 0.27
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (17 bp):
TATTATAAGAATTATTT
Found at i:11275312 original size:16 final size:16
Alignment explanation
Indices: 11275275--11275352 Score: 59
Period size: 16 Copynumber: 4.6 Consensus size: 16
11275265 ATATTATAAA
11275275 ATTATTTT-ATTATAAGT
1 ATTATTTTAATTAT-A-T
11275292 ATTATTTTAATTATAT
1 ATTATTTTAATTATAT
*
11275308 ATTATTATTACTTATTATGT
1 ATTATT-TTA---ATTATAT
** *
11275328 ATTATTTTTCTTAAAT
1 ATTATTTTAATTATAT
11275344 ATTATTTTA
1 ATTATTTTA
11275353 CATCTCTTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
16 19 0.38
17 12 0.24
18 5 0.10
19 2 0.04
20 12 0.24
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (16 bp):
ATTATTTTAATTATAT
Found at i:11275324 original size:20 final size:18
Alignment explanation
Indices: 11275220--11275333 Score: 67
Period size: 17 Copynumber: 6.2 Consensus size: 18
11275210 ATATTTATTA
*
11275220 TATTATTCTA-TATATAT
1 TATTATTTTATTATATAT
*
11275237 TATT-TGTTTATT-TTTACT
1 TATTAT-TTTATTATATA-T
* *
11275255 T-TTATATTATATATTATAA
1 TATTATTTTAT-TA-TATAT
* *
11275274 AATTATTTTATTATA-AG
1 TATTATTTTATTATATAT
11275291 TATTATTTTAATTATATAT
1 TATTATTTT-ATTATATAT
*
11275310 TATTATTACTTATTATGTAT
1 TATTATT--TTATTATATAT
11275330 TATT
1 TATT
11275334 TTTCTTAAAT
Statistics
Matches: 74, Mismatches: 11, Indels: 21
0.70 0.10 0.20
Matches are distributed among these distances:
16 1 0.01
17 25 0.34
18 13 0.18
19 10 0.14
20 23 0.31
21 2 0.03
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (18 bp):
TATTATTTTATTATATAT
Found at i:11275330 original size:36 final size:34
Alignment explanation
Indices: 11275271--11275353 Score: 98
Period size: 36 Copynumber: 2.4 Consensus size: 34
11275261 TTATATATTA
11275271 TAAA-ATTATTTTA-TTATAAGTATTATTTTAAT
1 TAAATATTATTTTACTTATAAGTATTATTTTAAT
* * **
11275303 TATATATTATTATTACTTATTATGTATTATTTTTCT
1 TAAATATTATT-TTACTTA-TAAGTATTATTTTAAT
11275339 TAAATATTATTTTAC
1 TAAATATTATTTTAC
11275354 ATCTCTTTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
32 3 0.07
33 6 0.14
34 3 0.07
35 7 0.17
36 23 0.55
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (34 bp):
TAAATATTATTTTACTTATAAGTATTATTTTAAT
Found at i:11275332 original size:10 final size:9
Alignment explanation
Indices: 11275275--11275333 Score: 50
Period size: 10 Copynumber: 6.3 Consensus size: 9
11275265 ATATTATAAA
11275275 ATTATT-TT
1 ATTATTATT
* *
11275283 ATTATAAGT
1 ATTATTATT
11275292 ATTATT-TT
1 ATTATTATT
11275300 AATTATATATT
1 -ATTAT-TATT
11275311 ATTATTACTT
1 ATTATTA-TT
11275321 ATTATGTATT
1 ATTAT-TATT
11275331 ATT
1 ATT
11275334 TTTCTTAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
8 6 0.15
9 13 0.32
10 18 0.44
11 4 0.10
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (9 bp):
ATTATTATT
Found at i:11275349 original size:3 final size:3
Alignment explanation
Indices: 11275275--11275333 Score: 50
Period size: 3 Copynumber: 19.0 Consensus size: 3
11275265 ATATTATAAA
* *
11275275 ATT ATT -TT ATT ATA AGT ATT ATT -TT AATT ATAT ATT ATT ATT ACTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT AT-T ATT ATT ATT A-TT
11275321 ATT ATGT ATT ATT
1 ATT AT-T ATT ATT
11275334 TTTCTTAAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
2 4 0.09
3 31 0.67
4 11 0.24
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:11275528 original size:25 final size:25
Alignment explanation
Indices: 11275491--11275538 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
11275481 TTATGTAATC
*
11275491 TTTATTATGTTTTATTTTTATATTA
1 TTTATTATGTTTTATTTATATATTA
* *
11275516 TTTATTGTTTTTTATTTATATAT
1 TTTATTATGTTTTATTTATATAT
11275539 GTTATGTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.73
Consensus pattern (25 bp):
TTTATTATGTTTTATTTATATATTA
Found at i:11275710 original size:53 final size:53
Alignment explanation
Indices: 11275597--11275700 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 53
11275587 TTAAAAAATT
11275597 AAATTATTATTATTAAATCATATTTTTTAACTCACATTATATACACATTTCAA
1 AAATTATTATTATTAAATCATATTTTTTAACTCACATTATATACACATTTCAA
11275650 AAATTATTATTATTAAATCATA-TTTTTAACTCACATTATATACACATTTCA
1 AAATTATTATTATTAAATCATATTTTTTAACTCACATTATATACACATTTCA
11275701 TTTTTTTATT
Statistics
Matches: 51, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 29 0.57
53 22 0.43
ACGTcount: A:0.41, C:0.13, G:0.00, T:0.45
Consensus pattern (53 bp):
AAATTATTATTATTAAATCATATTTTTTAACTCACATTATATACACATTTCAA
Found at i:11276140 original size:16 final size:17
Alignment explanation
Indices: 11276119--11276152 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
11276109 CATTTTTTTG
*
11276119 CTTTATAT-GTATTATT
1 CTTTATATCGTAGTATT
11276135 CTTTATATCGTAGTATT
1 CTTTATATCGTAGTATT
11276152 C
1 C
11276153 ATTTTTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.56
Consensus pattern (17 bp):
CTTTATATCGTAGTATT
Found at i:11279852 original size:3 final size:3
Alignment explanation
Indices: 11279844--11279960 Score: 100
Period size: 3 Copynumber: 40.7 Consensus size: 3
11279834 AACGAAAACG
* *
11279844 ATA ATA ATA ATA ATA AT- ATA A-A A-A ATA ATA GTA TTA A-A AT- ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * *
11279887 ATA ATA CTA ATG ATA ATA ATA ATA TTC ATA ATA AGA ACA TTA ATA TTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
11279935 ATA ATA ATA ATA ATA ATA ATG ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
11279961 GGGAATAGAA
Statistics
Matches: 90, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
2 10 0.11
3 80 0.89
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:11279887 original size:16 final size:15
Alignment explanation
Indices: 11279852--11279911 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 15
11279842 CGATAATAAT
11279852 AATAATAATATAAAA
1 AATAATAATATAAAA
*
11279867 AATAATAGTATTAAAA
1 AATAATAATA-TAAAA
* *
11279883 TATAATAATACTAATGAT
1 AATAATAATA-TAA--AA
11279901 AATAATAATAT
1 AATAATAATAT
11279912 TCATAATAAG
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
15 9 0.25
16 16 0.44
17 1 0.03
18 10 0.28
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (15 bp):
AATAATAATATAAAA
Found at i:11279999 original size:21 final size:21
Alignment explanation
Indices: 11279975--11280046 Score: 72
Period size: 21 Copynumber: 3.2 Consensus size: 21
11279965 ATAGAAAATA
11279975 AATAACCATAGTAATAATGAT
1 AATAACCATAGTAATAATGAT
* * *
11279996 AATAACAAAAGTAAAAATGACGCT
1 AATAACCATAGTAATAATGA---T
*
11280020 AATAACCATAGTAATAATAAAT
1 AATAACCATAGTAATAAT-GAT
11280042 AATAA
1 AATAA
11280047 TAACGATGAT
Statistics
Matches: 40, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
21 17 0.43
22 6 0.15
24 16 0.40
25 1 0.03
ACGTcount: A:0.58, C:0.10, G:0.08, T:0.24
Consensus pattern (21 bp):
AATAACCATAGTAATAATGAT
Found at i:11280390 original size:2 final size:2
Alignment explanation
Indices: 11280374--11280405 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
11280364 TTAATAATAC
11280374 TA TA TA -A TA TA -A TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11280406 AGTATCAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 26 0.93
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:11282145 original size:44 final size:44
Alignment explanation
Indices: 11282090--11282409 Score: 235
Period size: 44 Copynumber: 7.3 Consensus size: 44
11282080 CAGCCTGTCA
11282090 CCCTACTGCTTAGAGGGTTAAGGCTTGTCACCTTCGATCTGTTT
1 CCCTACTGCTTAGAGGGTTAAGGCTTGTCACCTTCGATCTGTTT
* * * * * * *
11282134 CCCTACTGCTTAG-GAGGATAA-GATCTATAATCTTC-AGCCTGTTA
1 CCCTACTGCTTAGAG-GGTTAAGGCT-TGTCACCTTCGA-TCTGTTT
* * *
11282178 CCCTACTGTTTAGGGGGTTAAGGCTTGTCAACTTCGATCTGTTT
1 CCCTACTGCTTAGAGGGTTAAGGCTTGTCACCTTCGATCTGTTT
* * ** * * **
11282222 CCCTACTGCTTAGGGGGTTAA-GATCTGT-AAATTC-AGCCTATCA
1 CCCTACTGCTTAGAGGGTTAAGGCT-TGTCACCTTCGA-TCTGTTT
*
11282265 CCCTACTGCTTAG-GGAGTTAAGACTTGTCACCTTCGATCTGTTT
1 CCCTACTGCTTAGAGG-GTTAAGGCTTGTCACCTTCGATCTGTTT
* * * * * * * *
11282309 CCCTACTGCTTAAAGGGATAA-GATCTATAATCTTC-AGCCTGTTA
1 CCCTACTGCTTAGAGGGTTAAGGCT-TGTCACCTTCGA-TCTGTTT
* * *
11282353 CTCTACTGTTTAGAGGGTTAAGGCTTGTCACATTCGATCTGTTT
1 CCCTACTGCTTAGAGGGTTAAGGCTTGTCACCTTCGATCTGTTT
11282397 CCCTACTGCTTAG
1 CCCTACTGCTTAG
11282410 GGCGATGAGT
Statistics
Matches: 207, Mismatches: 52, Indels: 34
0.71 0.18 0.12
Matches are distributed among these distances:
42 3 0.01
43 37 0.18
44 157 0.76
45 10 0.05
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (44 bp):
CCCTACTGCTTAGAGGGTTAAGGCTTGTCACCTTCGATCTGTTT
Found at i:11282213 original size:88 final size:87
Alignment explanation
Indices: 11282034--11282463 Score: 571
Period size: 88 Copynumber: 4.9 Consensus size: 87
11282024 GGTCCATCAT
* * *
11282034 CTTCGATCTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAA-ATTCAGCCTGTCACCCTACTG
1 CTTCGATCTGTTTCCCTACTGCTTAGGG-GATAAGATCTATAATCTTCAGCCTGTTACCCTACTG
* * *
11282098 CTTAGAGGGTTAAGGCTTGTCAC
65 TTTAGGGGGTTAAGGCTTGTCAA
11282121 CTTCGATCTGTTTCCCTACTGCTTAGGAGGATAAGATCTATAATCTTCAGCCTGTTACCCTACTG
1 CTTCGATCTGTTTCCCTACTGCTTAGG-GGATAAGATCTATAATCTTCAGCCTGTTACCCTACTG
11282186 TTTAGGGGGTTAAGGCTTGTCAA
65 TTTAGGGGGTTAAGGCTTGTCAA
* * * * *
11282209 CTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAA-ATTCAGCCTATCACCCTACTG
1 CTTCGATCTGTTTCCCTACTGCTTA-GGGGATAAGATCTATAATCTTCAGCCTGTTACCCTACTG
* * * *
11282273 CTTAGGGAGTTAAGACTTGTCAC
65 TTTAGGGGGTTAAGGCTTGTCAA
* *
11282296 CTTCGATCTGTTTCCCTACTGCTTAAAGGGATAAGATCTATAATCTTCAGCCTGTTACTCTACTG
1 CTTCGATCTGTTTCCCTACTGCTT-AGGGGATAAGATCTATAATCTTCAGCCTGTTACCCTACTG
*
11282361 TTTAGAGGGTTAAGGCTTGTC-A
65 TTTAGGGGGTTAAGGCTTGTCAA
* *
11282383 CATTCGATCTGTTTCCCTACTGCTTAGGGCGATGAGTTCT-TCAAATCTTCAGCCTGTTACCCTA
1 C-TTCGATCTGTTTCCCTACTGCTTAGGG-GATAAGATCTAT--AATCTTCAGCCTGTTACCCTA
*
11282447 TTGTTTAGGGGGTTAAG
62 CTGTTTAGGGGGTTAAG
11282464 ATCTGTAAAT
Statistics
Matches: 301, Mismatches: 33, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
87 120 0.40
88 144 0.48
89 37 0.12
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (87 bp):
CTTCGATCTGTTTCCCTACTGCTTAGGGGATAAGATCTATAATCTTCAGCCTGTTACCCTACTGT
TTAGGGGGTTAAGGCTTGTCAA
Found at i:11282294 original size:175 final size:174
Alignment explanation
Indices: 11282034--11282464 Score: 643
Period size: 175 Copynumber: 2.5 Consensus size: 174
11282024 GGTCCATCAT
* *
11282034 CTTCGATCTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTCAGCCTGTCACCCTACTGC
1 CTTCGATCTGTTTCCCTACTGCTTAGGGGGATAAGATCTGTAAATTCAGCCTATCACCCTACTGC
* *
11282099 TTAGAGGGTTAAGGCTTGTCACCTTCGATCTGTTTCCCTACTGCTT-AGGAGGATAAGATCTATA
66 TTAGAGGGTTAAGACTTGTCACCTTCGATCTGTTTCCCTACTGCTTAAAG-GGATAAGATCTATA
*
11282163 ATCTTCAGCCTGTTACCCTACTGTTTAGGGGGTTAAGGCTTGTCAA
130 ATCTTCAGCCTGTTACCCTACTGTTTAGAGGGTTAAGGCTTGTC-A
*
11282209 CTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTATCACCCTACTGC
1 CTTCGATCTGTTTCCCTACTGCTTAGGGGGATAAGATCTGTAAATTCAGCCTATCACCCTACTGC
11282274 TTAG-GGAGTTAAGACTTGTCACCTTCGATCTGTTTCCCTACTGCTTAAAGGGATAAGATCTATA
66 TTAGAGG-GTTAAGACTTGTCACCTTCGATCTGTTTCCCTACTGCTTAAAGGGATAAGATCTATA
*
11282338 ATCTTCAGCCTGTTACTCTACTGTTTAGAGGGTTAAGGCTTGTCA
130 ATCTTCAGCCTGTTACCCTACTGTTTAGAGGGTTAAGGCTTGTCA
* * * * *
11282383 CATTCGATCTGTTTCCCTACTGCTTAGGGCGATGAGTTCT-TCAAATCTTCAGCCTGTTACCCTA
1 C-TTCGATCTGTTTCCCTACTGCTTAGGGGGATAAGATCTGT-AAA--TTCAGCCTATCACCCTA
* * *
11282447 TTGTTTAGGGGGTTAAGA
62 CTGCTTAGAGGGTTAAGA
11282465 TCTGTAAATT
Statistics
Matches: 234, Mismatches: 15, Indels: 12
0.90 0.06 0.05
Matches are distributed among these distances:
174 5 0.02
175 197 0.84
176 2 0.01
177 28 0.12
178 2 0.01
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (174 bp):
CTTCGATCTGTTTCCCTACTGCTTAGGGGGATAAGATCTGTAAATTCAGCCTATCACCCTACTGC
TTAGAGGGTTAAGACTTGTCACCTTCGATCTGTTTCCCTACTGCTTAAAGGGATAAGATCTATAA
TCTTCAGCCTGTTACCCTACTGTTTAGAGGGTTAAGGCTTGTCA
Found at i:11294421 original size:3 final size:3
Alignment explanation
Indices: 11294413--11294573 Score: 89
Period size: 3 Copynumber: 54.3 Consensus size: 3
11294403 AACGAAAATG
* *
11294413 ATA ATA ATA ATA ATA AT- ATAA ATA ATA ATA GTA TTA A-A AT- ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * *
11294456 ATA ATA CTA ATG ATA ATG ATA ATA ATA GTC ATA ATA AGA ACA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * ** * *
11294504 TTA ATA ATA ATA ATG ATG ATA ATG GGA ATA GAAA ATAA ATA AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA AT-A ATA ATA ATA
*
11294551 AT- ATA AT- ATA ATG ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
11294574 AAGTAAAAGT
Statistics
Matches: 116, Mismatches: 34, Indels: 16
0.70 0.20 0.10
Matches are distributed among these distances:
2 10 0.09
3 99 0.85
4 7 0.06
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:11294457 original size:40 final size:41
Alignment explanation
Indices: 11294407--11294517 Score: 106
Period size: 40 Copynumber: 2.7 Consensus size: 41
11294397 AATGATAACG
11294407 AAAATGATAATAATAATAATAAT-ATAAATAATAATAGTATT
1 AAAATGATAATAATAATAATAATAAT-AATAATAATAGTATT
* * *
11294448 AAAAT-ATAATAATACTAATGATAATGATAATAATAGTCA-T
1 AAAATGATAATAATAATAATAATAATAATAATAATAGT-ATT
*
11294488 AATAA-GA-ACATTAATATTAATAATAATAAT
1 AA-AATGATA-A-TAATAATAATAATAATAAT
11294518 GATGATAATG
Statistics
Matches: 58, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
40 30 0.52
41 12 0.21
42 16 0.28
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (41 bp):
AAAATGATAATAATAATAATAATAATAATAATAATAGTATT
Found at i:11294963 original size:9 final size:9
Alignment explanation
Indices: 11294944--11294975 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
11294934 AAAACTATTA
11294944 ATAATACTAT
1 ATAATA-TAT
11294954 ATAATATAT
1 ATAATATAT
11294963 ATAATATAT
1 ATAATATAT
11294972 ATAA
1 ATAA
11294976 GTATCAAGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 16 0.73
10 6 0.27
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (9 bp):
ATAATATAT
Found at i:11297651 original size:7 final size:7
Alignment explanation
Indices: 11297639--11297678 Score: 80
Period size: 7 Copynumber: 5.7 Consensus size: 7
11297629 TTCTCATGAG
11297639 CCCTAAA
1 CCCTAAA
11297646 CCCTAAA
1 CCCTAAA
11297653 CCCTAAA
1 CCCTAAA
11297660 CCCTAAA
1 CCCTAAA
11297667 CCCTAAA
1 CCCTAAA
11297674 CCCTA
1 CCCTA
11297679 CAACAAACCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.40, C:0.45, G:0.00, T:0.15
Consensus pattern (7 bp):
CCCTAAA
Found at i:11299985 original size:22 final size:22
Alignment explanation
Indices: 11299919--11299985 Score: 53
Period size: 22 Copynumber: 3.0 Consensus size: 22
11299909 TTACCGTTTC
* *
11299919 GCACTTTGGTGCTTATTGATCT
1 GCACTTTGGTGCTTAATGATTT
*** ** * *
11299941 GCACTTCACTGCCCACTGTTTT
1 GCACTTTGGTGCTTAATGATTT
11299963 GCACTTTGGTGCTTAATGATTT
1 GCACTTTGGTGCTTAATGATTT
11299985 G
1 G
11299986 TACCTCGGTG
Statistics
Matches: 30, Mismatches: 15, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.15, C:0.22, G:0.21, T:0.42
Consensus pattern (22 bp):
GCACTTTGGTGCTTAATGATTT
Found at i:11304913 original size:38 final size:38
Alignment explanation
Indices: 11304857--11304956 Score: 139
Period size: 38 Copynumber: 2.6 Consensus size: 38
11304847 GAACATGATA
* * * *
11304857 ATGTCTATTGTTAATGATGAATTGAGTACATGTTGAAC
1 ATGTCTACTGTCAGTGATGAATTGAGTACATGTTAAAC
11304895 ATGTCTACTGTCAGTGATGAATTGAGTACATGTTAAAC
1 ATGTCTACTGTCAGTGATGAATTGAGTACATGTTAAAC
*
11304933 ATGTCTACTG-CTAGTGTTGAATTG
1 ATGTCTACTGTC-AGTGATGAATTG
11304957 TTCTATTGCA
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
37 1 0.02
38 55 0.98
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (38 bp):
ATGTCTACTGTCAGTGATGAATTGAGTACATGTTAAAC
Found at i:11305081 original size:44 final size:44
Alignment explanation
Indices: 11305025--11305373 Score: 312
Period size: 44 Copynumber: 8.0 Consensus size: 44
11305015 AAAGTGGCAG
*
11305025 TTTATCTGCAAATTTTGTTGTGTATCCACGGCCTAGTGGCAAAT
1 TTTATCTGCAAATTTTGTTGTGTATCCACAGCCTAGTGGCAAAT
* * * * * * *
11305069 TTTATCTACAAATTTTATTGTGTATCCATAACTTAGTGGCAGAG
1 TTTATCTGCAAATTTTGTTGTGTATCCACAGCCTAGTGGCAAAT
11305113 TTTATCTGCAAATTTTGTTGTGTATCCACAAG-CTAGTGG-AAGAT
1 TTTATCTGCAAATTTTGTTGTGTATCCAC-AGCCTAGTGGCAA-AT
* * * * * *
11305157 TTTATCTACAAATTTTGTTGTGTACCCATAGCCCAGTGGTAGAT
1 TTTATCTGCAAATTTTGTTGTGTATCCACAGCCTAGTGGCAAAT
* * * *
11305201 TTTATCTGCGAATTTTGCTGTGTATCCACAGCC-ATTGGCAGAT
1 TTTATCTGCAAATTTTGTTGTGTATCCACAGCCTAGTGGCAAAT
* * * * * *
11305244 TTCATCTACAAATTTTCTTGCT-CATCCACAACTTAGTGGC-AAT
1 TTTATCTGCAAATTTTGTTG-TGTATCCACAGCCTAGTGGCAAAT
* * * * * *
11305287 TTTCATCTGCGAATTTTGTTGTGTATTCACTGCCCAGTGGTAGAT
1 TTT-ATCTGCAAATTTTGTTGTGTATCCACAGCCTAGTGGCAAAT
* * * * *
11305332 TTTATCTGCGAATCTTGCTGTGCATCCACAGCGTAGTGGCAA
1 TTTATCTGCAAATTTTGTTGTGTATCCACAGCCTAGTGGCAA
11305374 TTTATTTACA
Statistics
Matches: 238, Mismatches: 58, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
43 39 0.16
44 192 0.81
45 7 0.03
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (44 bp):
TTTATCTGCAAATTTTGTTGTGTATCCACAGCCTAGTGGCAAAT
Found at i:11305322 original size:131 final size:131
Alignment explanation
Indices: 11305025--11305388 Score: 416
Period size: 131 Copynumber: 2.8 Consensus size: 131
11305015 AAAGTGGCAG
* * * * * * **
11305025 TTTATCTGCAAATTTTGTTGTGTATCCACGGCCTAGTGGCAAATTTTATCTACAAATTTTATTGT
1 TTTATCTGCAAATTTTGTTGTGTATCCACTGCCCAGTGGTAGATTTTATCTGCGAATTTTGCTGT
* * * * * *
11305090 GTATCCATAACTTAGTGGCAGAGTTTATCTGCAAATTTTGTTGTGTATCCACAAGCTAGTGGAAG
66 GTATCCACAGCGTAGTGGCAGA-TTTATCTACAAATTTTCTTGTGCATCCACAAGCTAGTGGAAG
11305155 AT
130 AT
* *
11305157 TTTATCTACAAATTTTGTTGTGTACCCA-TAGCCCAGTGGTAGATTTTATCTGCGAATTTTGCTG
1 TTTATCTGCAAATTTTGTTGTGTATCCACT-GCCCAGTGGTAGATTTTATCTGCGAATTTTGCTG
* *
11305221 TGTATCCACAGC-CATTGGCAGATTTCATCTACAAATTTTCTTGCT-CATCCACAA-CTTAGTGG
65 TGTATCCACAGCGTAGTGGCAGATTT-ATCTACAAATTTTCTTG-TGCATCCACAAGC-TAGTGG
*
11305283 CA-AT
127 AAGAT
* * *
11305287 TTTCATCTGCGAATTTTGTTGTGTATTCACTGCCCAGTGGTAGATTTTATCTGCGAATCTTGCTG
1 TTT-ATCTGCAAATTTTGTTGTGTATCCACTGCCCAGTGGTAGATTTTATCTGCGAATTTTGCTG
* *
11305352 TGCATCCACAGCGTAGTGGCA-ATTTATTTACAAATTT
65 TGTATCCACAGCGTAGTGGCAGATTTATCTACAAATTT
11305389 ACTGGTGGTT
Statistics
Matches: 198, Mismatches: 27, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
130 20 0.10
131 107 0.54
132 71 0.36
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.39
Consensus pattern (131 bp):
TTTATCTGCAAATTTTGTTGTGTATCCACTGCCCAGTGGTAGATTTTATCTGCGAATTTTGCTGT
GTATCCACAGCGTAGTGGCAGATTTATCTACAAATTTTCTTGTGCATCCACAAGCTAGTGGAAGA
T
Found at i:11305371 original size:88 final size:87
Alignment explanation
Indices: 11305017--11305376 Score: 354
Period size: 88 Copynumber: 4.1 Consensus size: 87
11305007 ATGGAAGAAA
* *
11305017 AGTGGCAG--TTTATCTGCAAATTTTGTTGTGTATCCACGGCCTAGTGGCAAATTTTATCTACAA
1 AGTGGCAGATTTTATCTGCAAATTTTGTTGTGTATCCACAGCC-AGTGGCAGATTTTATCTACAA
** * *
11305080 ATTTTATTGTGTATCCATAACTT
65 ATTTTGCTGTGCATCCACAACTT
* * *
11305103 AGTGGCAGAGTTTATCTGCAAATTTTGTTGTGTATCCACAAGCTAGTGGAAGATTTTATCTACAA
1 AGTGGCAGATTTTATCTGCAAATTTTGTTGTGTATCCAC-AGCCAGTGGCAGATTTTATCTACAA
* * * * * **
11305168 ATTTTGTTGTGTACCCATAGCCC
65 ATTTTGCTGTGCATCCACAACTT
* * * * *
11305191 AGTGGTAGATTTTATCTGCGAATTTTGCTGTGTATCCACAGCCATTGGCAGATTTCATCTACAAA
1 AGTGGCAGATTTTATCTGCAAATTTTGTTGTGTATCCACAGCCAGTGGCAGATTTTATCTACAAA
11305256 TTTT-CT-TGCTCATCCACAACTT
66 TTTTGCTGTG--CATCCACAACTT
* * * * * *
11305278 AGTGGCA-ATTTTCATCTGCGAATTTTGTTGTGTATTCACTGCCCAGTGGTAGATTTTATCTGCG
1 AGTGGCAGATTTT-ATCTGCAAATTTTGTTGTGTATCCACAG-CCAGTGGCAGATTTTATCTACA
* * *
11305342 AATCTTGCTGTGCATCCACAGCGT
64 AATTTTGCTGTGCATCCACAACTT
11305366 AGTGGCA-ATTT
1 AGTGGCAGATTT
11305377 ATTTACAAAT
Statistics
Matches: 229, Mismatches: 36, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
85 2 0.01
86 14 0.06
87 63 0.28
88 144 0.63
89 4 0.02
90 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (87 bp):
AGTGGCAGATTTTATCTGCAAATTTTGTTGTGTATCCACAGCCAGTGGCAGATTTTATCTACAAA
TTTTGCTGTGCATCCACAACTT
Found at i:11316491 original size:14 final size:13
Alignment explanation
Indices: 11316459--11316497 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
11316449 TAGTTTAATT
11316459 ATATTTTTAAAAA
1 ATATTTTTAAAAA
*
11316472 ATATTTTTAAGAA
1 ATATTTTTAAAAA
*
11316485 ATAATTTTGAAAA
1 AT-ATTTTTAAAA
11316498 GTTTAGTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 14 0.64
14 8 0.36
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (13 bp):
ATATTTTTAAAAA
Found at i:11320856 original size:30 final size:30
Alignment explanation
Indices: 11320811--11320892 Score: 80
Period size: 31 Copynumber: 2.7 Consensus size: 30
11320801 AATATGTAAT
*
11320811 TGTATACAT-AAACTTTAATTTGGTGC-AA
1 TGTATACTTAAAACTTTAATTTGGTGCAAA
* * *
11320839 T-TATACATGTGAAACTTTAACTATGGTTCAAA
1 TGTATAC-T-TAAAACTTTAA-TTTGGTGCAAA
11320871 TGTATACTTAAAACTTTAATTT
1 TGTATACTTAAAACTTTAATTT
11320893 TGAATTAATC
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 1 0.02
30 11 0.26
31 16 0.37
32 4 0.09
33 5 0.12
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.41
Consensus pattern (30 bp):
TGTATACTTAAAACTTTAATTTGGTGCAAA
Found at i:11321856 original size:22 final size:21
Alignment explanation
Indices: 11321808--11321859 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
11321798 CAAACAAAAT
11321808 TGTATATAAATACACCTTAAA
1 TGTATATAAATACACCTTAAA
** *
11321829 -AAATATAAATATACCTTCAAA
1 TGTATATAAATACACCTT-AAA
11321850 TGTATATAAA
1 TGTATATAAA
11321860 CTATTTTTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
20 14 0.58
21 3 0.12
22 7 0.29
ACGTcount: A:0.52, C:0.12, G:0.04, T:0.33
Consensus pattern (21 bp):
TGTATATAAATACACCTTAAA
Found at i:11323349 original size:37 final size:36
Alignment explanation
Indices: 11323304--11323380 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 36
11323294 ATTCGTACTC
*
11323304 TAAATAAAT-AGTAGT-AAATATGACTAAAGAATAAAAA
1 TAAATAAATAAG-AGTAAAAT-TGACAAAAG-ATAAAAA
*
11323341 TAAATAAATAAGAGTAAAATTGACAAAAGATGAAAA
1 TAAATAAATAAGAGTAAAATTGACAAAAGATAAAAA
11323377 TAAA
1 TAAA
11323381 AATATAAAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
36 10 0.28
37 20 0.56
38 6 0.17
ACGTcount: A:0.64, C:0.03, G:0.12, T:0.22
Consensus pattern (36 bp):
TAAATAAATAAGAGTAAAATTGACAAAAGATAAAAA
Found at i:11324570 original size:18 final size:18
Alignment explanation
Indices: 11324547--11324584 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
11324537 TACATTATTT
11324547 AATAACTAAAGCCCAATA
1 AATAACTAAAGCCCAATA
11324565 AATAACTAAAGCCCAATA
1 AATAACTAAAGCCCAATA
11324583 AA
1 AA
11324585 CTTTAACCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.58, C:0.21, G:0.05, T:0.16
Consensus pattern (18 bp):
AATAACTAAAGCCCAATA
Found at i:11328792 original size:30 final size:30
Alignment explanation
Indices: 11328758--11328822 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
11328748 CATTTGACAT
*
11328758 TTCCTCCACAATCAAGCCATAGTAATTTTC
1 TTCCTCCACAATCAAACCATAGTAATTTTC
11328788 TTCCTCCACAATCAAACCATAGTAATTTTC
1 TTCCTCCACAATCAAACCATAGTAATTTTC
11328818 TTCCT
1 TTCCT
11328823 TATGTTGAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.29, C:0.31, G:0.05, T:0.35
Consensus pattern (30 bp):
TTCCTCCACAATCAAACCATAGTAATTTTC
Found at i:11330096 original size:30 final size:30
Alignment explanation
Indices: 11330053--11330111 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
11330043 GAAGGTGGGA
*
11330053 TGGGAAGGAAGTAAAAATTTTAGGGGGAAAG
1 TGGGAAGGAAGTAAAAATTTT-GGGAGAAAG
*
11330084 TGGG-AGGGAGTAAAAATTTTGGGAGAAA
1 TGGGAAGGAAGTAAAAATTTTGGGAGAAA
11330112 ATAAAAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 7 0.27
30 15 0.58
31 4 0.15
ACGTcount: A:0.41, C:0.00, G:0.39, T:0.20
Consensus pattern (30 bp):
TGGGAAGGAAGTAAAAATTTTGGGAGAAAG
Found at i:11330266 original size:30 final size:32
Alignment explanation
Indices: 11330216--11330276 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 32
11330206 GAGGTTGGAT
*
11330216 GGAAGAGGAGTAAGAGTTTTG-GGGAGAAAGTG
1 GGAAGAGGAGTAAAAGTTTTGAGGGA-AAAGTG
11330248 GGAAG-GG-GTAAAAGTTTTGAGGGAAAAGT
1 GGAAGAGGAGTAAAAGTTTTGAGGGAAAAGT
11330277 AAAAAGGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
30 16 0.59
31 6 0.22
32 5 0.19
ACGTcount: A:0.36, C:0.00, G:0.44, T:0.20
Consensus pattern (32 bp):
GGAAGAGGAGTAAAAGTTTTGAGGGAAAAGTG
Found at i:11334123 original size:43 final size:43
Alignment explanation
Indices: 11334063--11334173 Score: 152
Period size: 43 Copynumber: 2.6 Consensus size: 43
11334053 AAAAACTCCG
* * * *
11334063 CTAAAAATCACAG-CTTTTAGCGGTGTTTGTGGGAAAAGCGCCA
1 CTAAAAGTCAC-GTCTTTTAGCGGCGTTTATGGGAAAAGCACCA
*
11334106 CTAAAAGTCACGTCTTTTAGCGGCGTTTATGGGAAAAGCACCG
1 CTAAAAGTCACGTCTTTTAGCGGCGTTTATGGGAAAAGCACCA
*
11334149 CTAAAAGTCACATCTTTTAGCGGCG
1 CTAAAAGTCACGTCTTTTAGCGGCG
11334174 CTTTTTCCAC
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
42 1 0.02
43 60 0.98
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (43 bp):
CTAAAAGTCACGTCTTTTAGCGGCGTTTATGGGAAAAGCACCA
Found at i:11334193 original size:43 final size:43
Alignment explanation
Indices: 11334060--11334195 Score: 132
Period size: 43 Copynumber: 3.2 Consensus size: 43
11334050 AAAAAAAACT
* * * * **
11334060 CCGCTAAAAATCACAGCTTTTAGCGGTGTTTGTGGGAAAAGCG
1 CCGCTAAAAGTCACATCTTTTAGCGGCGTTTATGCCAAAAGCG
* * ** *
11334103 CCACTAAAAGTCACGTCTTTTAGCGGCGTTTATGGGAAAAGCA
1 CCGCTAAAAGTCACATCTTTTAGCGGCGTTTATGCCAAAAGCG
*
11334146 CCGCTAAAAGTCACATCTTTTAGCGGCGCTTT-TTCCACAAA-CG
1 CCGCTAAAAGTCACATCTTTTAGCGGCG-TTTATGCCA-AAAGCG
11334189 CCGCTAA
1 CCGCTAA
11334196 TTTTGGCAGA
Statistics
Matches: 78, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
43 72 0.92
44 6 0.08
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (43 bp):
CCGCTAAAAGTCACATCTTTTAGCGGCGTTTATGCCAAAAGCG
Found at i:11334326 original size:33 final size:31
Alignment explanation
Indices: 11334249--11334331 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
11334239 TTCCTGCATT
* * * *
11334249 AAAATCCAACCAAATACAACAAATATAGTAT
1 AAAATACAACCAAAAACATCAAATATAGTAA
* * *
11334280 AAAATGCAGCCAAAAACATCAAATTTAGCATAA
1 AAAATACAACCAAAAACATCAAATATAG--TAA
11334313 AAAATACAACCAAAAACAT
1 AAAATACAACCAAAAACAT
11334332 TAATTCTAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 23 0.55
33 19 0.45
ACGTcount: A:0.59, C:0.19, G:0.05, T:0.17
Consensus pattern (31 bp):
AAAATACAACCAAAAACATCAAATATAGTAA
Found at i:11334954 original size:17 final size:19
Alignment explanation
Indices: 11334917--11334954 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
11334907 TACAATATAG
11334917 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTATTTAA
11334936 TAGTAAAAAT-TTA-TTAA
1 TAGTAAAAATATTATTTAA
11334953 TA
1 TA
11334955 TTTGAAAGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.32
18 3 0.16
19 10 0.53
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (19 bp):
TAGTAAAAATATTATTTAA
Found at i:11342788 original size:64 final size:64
Alignment explanation
Indices: 11342670--11342789 Score: 188
Period size: 64 Copynumber: 1.9 Consensus size: 64
11342660 GATTTTATTG
* * *
11342670 ATATTATATTAATAAATAAATTTATTAAAAATCGTGATAGAAATATTTGTATATTAGATGGGAA
1 ATATTATATCAATAAATAAATTTATTAAAAATCGTGATAGAAATATTAGAATATTAGATGGGAA
*
11342734 ATATTATATCAATAAATAAATTTATTAAAAATTGTGATAGAAATA-TAGAAATATTA
1 ATATTATATCAATAAATAAATTTATTAAAAATCGTGATAGAAATATTAG-AATATTA
11342790 AATCACAAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
63 2 0.04
64 49 0.96
ACGTcount: A:0.50, C:0.02, G:0.10, T:0.38
Consensus pattern (64 bp):
ATATTATATCAATAAATAAATTTATTAAAAATCGTGATAGAAATATTAGAATATTAGATGGGAA
Found at i:11347005 original size:39 final size:39
Alignment explanation
Indices: 11346949--11347125 Score: 291
Period size: 39 Copynumber: 4.5 Consensus size: 39
11346939 ACAAAGCATG
*
11346949 CGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
*
11346990 CGGGACTTAGCCCGGATATAACGCCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
11347029 CGGGACTTAGCCCGGATATAGCACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
11347068 CAGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
11347107 CGGGACTTAGCCCGGATAT
1 CGGGACTTAGCCCGGATAT
11347126 TTTTCCAGCA
Statistics
Matches: 128, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 120 0.94
40 2 0.02
41 6 0.05
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:11347134 original size:39 final size:39
Alignment explanation
Indices: 11346951--11347288 Score: 287
Period size: 39 Copynumber: 8.6 Consensus size: 39
11346941 AAAGCATGCG
* *
11346951 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTC
1 GGAC-TTAAGCCCGGATATATTTCCAGCACGAATGCCTTC
***
11346991 GGGACTT-AGCCCGGATATAACGCCAGCACGAATGCCTTC
1 -GGACTTAAGCCCGGATATATTTCCAGCACGAATGCCTTC
***
11347030 GGGACTT-AGCCCGGATATAGCACCAGCACGAATGCCTTC
1 -GGACTTAAGCCCGGATATATTTCCAGCACGAATGCCTTC
* *
11347069 AGGACTT-AGCCCGGATATAATACCAGCACGAATGCCTTC
1 -GGACTTAAGCCCGGATATATTTCCAGCACGAATGCCTTC
* ** *
11347108 GGGACTT-AGCCCGGATATTTTTCCAGCACTTA-GCCTGC
1 -GGACTTAAGCCCGGATATATTTCCAGCACGAATGCCTTC
* * * *
11347146 GGACTTTAAGTCCGGATATATTTCCAGCA-TAAAGCCTGC
1 GGAC-TTAAGCCCGGATATATTTCCAGCACGAATGCCTTC
* * * *
11347185 GGACTTTAAGTCCGGATATATTTCCAGCA-TAAAGCCTGC
1 GGAC-TTAAGCCCGGATATATTTCCAGCACGAATGCCTTC
* * * *
11347224 GGACTTCAAGTCCGGATATATTTCCAGCA-TAAAGCCTAC
1 GGACTT-AAGCCCGGATATATTTCCAGCACGAATGCCTTC
* *
11347263 GGACTTCAAGTCCGGATATTTTTCCA
1 GGACTT-AAGCCCGGATATATTTCCA
11347289 ATACCATGCA
Statistics
Matches: 274, Mismatches: 19, Indels: 10
0.90 0.06 0.03
Matches are distributed among these distances:
37 4 0.01
38 11 0.04
39 253 0.92
40 2 0.01
41 4 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
GGACTTAAGCCCGGATATATTTCCAGCACGAATGCCTTC
Found at i:11347173 original size:117 final size:117
Alignment explanation
Indices: 11346941--11347288 Score: 350
Period size: 117 Copynumber: 3.0 Consensus size: 117
11346931 TCACCACCAC
*
11346941 AAAGCATGCGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGA
1 AAAGCCTGC-GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGA
*** * * * ***
11347006 TATAACGCCAGCACGAATGCCTTCGGGAC-TT-AGCCCGGATATAGCACCAGCACG
65 TATATTTCCAGCACTAA-GCCTAC-GGACTTTAAGTCCGGATATATTTCCAGCA-G
* *
11347060 AATGCCTTCAGGAC-TT-AGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGA
1 AAAGCCTGC-GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGA
* * * *
11347123 TATTTTTCCAGCACTTAGCCTGCGGACTTTAAGTCCGGATATATTTCCAGCAT
65 TATATTTCCAGCACTAAGCCTACGGACTTTAAGTCCGGATATATTTCCAGCAG
* * * * * * *
11347176 AAAGCCTGCGGACTTTAAGTCCGGATATATTTCCAGCA-TAAAGCCTGC-GGACTTCAAGTCCGG
1 AAAGCCTGCGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTT--AGCCCGG
* *
11347239 ATATATTTCCAGCA-TAAAGCCTACGGACTTCAAGTCCGGATATTTTTCCA
64 ATATATTTCCAGCACT-AAGCCTACGGACTTTAAGTCCGGATATATTTCCA
11347289 ATACCATGCA
Statistics
Matches: 192, Mismatches: 30, Indels: 16
0.81 0.13 0.07
Matches are distributed among these distances:
115 14 0.07
116 24 0.12
117 142 0.74
118 2 0.01
119 10 0.05
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (117 bp):
AAAGCCTGCGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGAT
ATATTTCCAGCACTAAGCCTACGGACTTTAAGTCCGGATATATTTCCAGCAG
Found at i:11350317 original size:16 final size:17
Alignment explanation
Indices: 11350298--11350333 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
11350288 ATTATTTAAT
11350298 ATATAAA-TAAAAAACA
1 ATATAAATTAAAAAACA
11350314 ATATAAATTAAAAAACA
1 ATATAAATTAAAAAACA
11350331 ATA
1 ATA
11350334 AGTTATATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.22
Consensus pattern (17 bp):
ATATAAATTAAAAAACA
Found at i:11350731 original size:65 final size:64
Alignment explanation
Indices: 11350647--11350797 Score: 151
Period size: 65 Copynumber: 2.3 Consensus size: 64
11350637 AACCCCTCAA
* * * ** * *
11350647 CCCTAAACCATTAACCCTTAATCCTTAAAATTTAAATACTAAACCCTAAATCATGTCCCATTAAC
1 CCCTAAACCCTTAACCCTTAAACCATAAAACCTAAACACTAAACCCTAAA-CATATCCCATTAAC
* * * *
11350712 CCCTAAACCCTTGAA-CCTTAAACCATAAACCCTAAACCCTAAACCCTAAACCTATCCCCTTAAC
1 CCCTAAACCCTT-AACCCTTAAACCATAAAACCTAAACACTAAACCCTAAACATATCCCATTAAC
* * *
11350776 CCCTAGACCCTCAACCTTTAAA
1 CCCTAAACCCTTAACCCTTAAA
11350798 TGTTAACCCC
Statistics
Matches: 70, Mismatches: 14, Indels: 5
0.79 0.16 0.06
Matches are distributed among these distances:
63 2 0.03
64 27 0.39
65 39 0.56
66 2 0.03
ACGTcount: A:0.38, C:0.36, G:0.02, T:0.25
Consensus pattern (64 bp):
CCCTAAACCCTTAACCCTTAAACCATAAAACCTAAACACTAAACCCTAAACATATCCCATTAAC
Found at i:11350732 original size:22 final size:21
Alignment explanation
Indices: 11350707--11350837 Score: 93
Period size: 22 Copynumber: 6.1 Consensus size: 21
11350697 TCATGTCCCA
* *
11350707 TTAACCCCTAAACCCTTGAACC
1 TTAAACCCTAAACCC-TAAACC
*
11350729 TTAAACCATAAACCCTAAACC
1 TTAAACCCTAAACCCTAAACC
* **
11350750 CTAAACCCTAAA-CCTATCCCC
1 TTAAACCCTAAACCCTA-AACC
* * *
11350771 TTAACCCCTAGACCCTCAACC
1 TTAAACCCTAAACCCTAAACC
*** *
11350792 TTTAAATGTTAACCCCTAAACC
1 -TTAAACCCTAAACCCTAAACC
*
11350814 ATAAACCCTAAATCCCTAAACC
1 TTAAACCCTAAA-CCCTAAACC
11350836 TT
1 TT
11350838 TAGCCATTGA
Statistics
Matches: 79, Mismatches: 26, Indels: 8
0.70 0.23 0.07
Matches are distributed among these distances:
20 4 0.05
21 35 0.44
22 40 0.51
ACGTcount: A:0.37, C:0.38, G:0.02, T:0.23
Consensus pattern (21 bp):
TTAAACCCTAAACCCTAAACC
Found at i:11350797 original size:64 final size:65
Alignment explanation
Indices: 11350685--11350827 Score: 173
Period size: 64 Copynumber: 2.2 Consensus size: 65
11350675 AATTTAAATA
* *
11350685 CTAAACCCTAAATCATGTCCCATTAACCCCTAAACCCTTGAACCTTAAACCATAAACCCTAAACC
1 CTAAACCCTAAATCATATCCCATTAACCCCTAAACCCTTCAACCTTAAACCATAAACCCTAAACC
* * * *** *
11350750 CTAAACCCTAAA-CCTATCCCCTTAACCCCTAGACCC-TCAACCTTTAAATGTTAACCCCTAAAC
1 CTAAACCCTAAATCATATCCCATTAACCCCTAAACCCTTCAACC-TTAAACCATAAACCCTAAAC
11350813 C
65 C
*
11350814 ATAAACCCTAAATC
1 CTAAACCCTAAATC
11350828 CCTAAACCTT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
63 5 0.08
64 48 0.73
65 13 0.20
ACGTcount: A:0.37, C:0.38, G:0.03, T:0.22
Consensus pattern (65 bp):
CTAAACCCTAAATCATATCCCATTAACCCCTAAACCCTTCAACCTTAAACCATAAACCCTAAACC
Found at i:11350830 original size:8 final size:7
Alignment explanation
Indices: 11350712--11350835 Score: 79
Period size: 7 Copynumber: 17.3 Consensus size: 7
11350702 TCCCATTAAC
11350712 CCCTAAA
1 CCCTAAA
*
11350719 CCCTTGAA
1 CCC-TAAA
*
11350727 CCTTAAA
1 CCCTAAA
*
11350734 CCATAAA
1 CCCTAAA
11350741 CCCTAAA
1 CCCTAAA
11350748 CCCTAAA
1 CCCTAAA
11350755 CCCTAAA
1 CCCTAAA
**
11350762 -CCTATC
1 CCCTAAA
*
11350768 CCCTTAAC
1 CCC-TAAA
*
11350776 CCCTAGA
1 CCCTAAA
*
11350783 CCCTCAA
1 CCCTAAA
*
11350790 CCTTTAAA
1 CC-CTAAA
*** *
11350798 TGTTAAC
1 CCCTAAA
11350805 CCCTAAA
1 CCCTAAA
*
11350812 CCATAAA
1 CCCTAAA
11350819 CCCTAAA
1 CCCTAAA
11350826 TCCCTAAA
1 -CCCTAAA
11350834 CC
1 CC
11350836 TTTAGCCATT
Statistics
Matches: 89, Mismatches: 23, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
6 4 0.04
7 64 0.72
8 21 0.24
ACGTcount: A:0.37, C:0.40, G:0.02, T:0.21
Consensus pattern (7 bp):
CCCTAAA
Found at i:11351027 original size:16 final size:14
Alignment explanation
Indices: 11350996--11351033 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 14
11350986 ATAATCCATA
11350996 TAAACCATAAACCC
1 TAAACCATAAACCC
11351010 TAAACCATATATACCC
1 TAAACCATA-A-ACCC
11351026 TAAACCAT
1 TAAACCAT
11351034 GCATAAACCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 9 0.41
15 1 0.05
16 12 0.55
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (14 bp):
TAAACCATAAACCC
Found at i:11351040 original size:41 final size:41
Alignment explanation
Indices: 11350911--11351048 Score: 101
Period size: 41 Copynumber: 3.3 Consensus size: 41
11350901 AATATTAACC
*
11350911 CATAAACCATAAACCCTTAAACCCATA-AT-CCCTACACCTATG
1 CATAAACCATAAACCC-TAAA-CCATATATACCCTAAACC-ATG
* * * *
11350953 CATAATCCCTAAACCTTAAA--ATAT-TAACTCGTCATAATCCAT-
1 CATAAACCATAAACCCTAAACCATATAT-AC-C--C-TAAACCATG
11350995 -ATAAACCATAAACCCTAAACCATATATACCCTAAACCATG
1 CATAAACCATAAACCCTAAACCATATATACCCTAAACCATG
*
11351035 CATAAACCTTAAAC
1 CATAAACCATAAAC
11351049 TATAATAATG
Statistics
Matches: 74, Mismatches: 10, Indels: 25
0.68 0.09 0.23
Matches are distributed among these distances:
38 4 0.05
39 7 0.09
40 2 0.03
41 33 0.45
42 14 0.19
43 9 0.12
44 5 0.07
ACGTcount: A:0.43, C:0.30, G:0.02, T:0.24
Consensus pattern (41 bp):
CATAAACCATAAACCCTAAACCATATATACCCTAAACCATG
Found at i:11351278 original size:14 final size:14
Alignment explanation
Indices: 11351259--11351312 Score: 56
Period size: 14 Copynumber: 3.8 Consensus size: 14
11351249 GTGTCATTAA
11351259 TTTAGGGTTTATAG
1 TTTAGGGTTTATAG
*
11351273 TTTAGGGTTTCA-AA
1 TTTAGGGTTT-ATAG
* *
11351287 TTTAAGGTCTATAG
1 TTTAGGGTTTATAG
11351301 TTTATGGGTTTA
1 TTTA-GGGTTTA
11351313 GGGGTTAAAG
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
13 1 0.03
14 24 0.77
15 6 0.19
ACGTcount: A:0.24, C:0.04, G:0.24, T:0.48
Consensus pattern (14 bp):
TTTAGGGTTTATAG
Found at i:11351289 original size:28 final size:29
Alignment explanation
Indices: 11351257--11351311 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
11351247 CTGTGTCATT
* *
11351257 AATTTAGGGTTTATAGTTTA-GGGTTTCA
1 AATTTAAGGTCTATAGTTTATGGGTTTCA
11351285 AATTTAAGGTCTATAGTTTATGGGTTT
1 AATTTAAGGTCTATAGTTTATGGGTTT
11351312 AGGGGTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 18 0.75
29 6 0.25
ACGTcount: A:0.25, C:0.04, G:0.24, T:0.47
Consensus pattern (29 bp):
AATTTAAGGTCTATAGTTTATGGGTTTCA
Found at i:11351987 original size:40 final size:42
Alignment explanation
Indices: 11351835--11351975 Score: 191
Period size: 41 Copynumber: 3.4 Consensus size: 42
11351825 AATAGTTTTC
*
11351835 ATCTATAGCGGCGTTTTTCCAAAAAGCGCCGCTAAAACTCAA
1 ATCTATAGCGGCGTTTTTCGAAAAAGCGCCGCTAAAACTCAA
* * *
11351877 ATCTATTGCGGCGTTTTTCTAAAAA-CGCCACTAAAACTCAA
1 ATCTATAGCGGCGTTTTTCGAAAAAGCGCCGCTAAAACTCAA
* *
11351918 ATCCT-TAGTGGCGTTTTT-GAAAAAGCGCCGCTAATACTC-A
1 AT-CTATAGCGGCGTTTTTCGAAAAAGCGCCGCTAAAACTCAA
11351958 ATCTATAGCGGCGTTTTT
1 ATCTATAGCGGCGTTTTT
11351976 GAGGAAGCGC
Statistics
Matches: 87, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
39 2 0.02
40 20 0.23
41 40 0.46
42 25 0.29
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (42 bp):
ATCTATAGCGGCGTTTTTCGAAAAAGCGCCGCTAAAACTCAA
Found at i:11352205 original size:130 final size:130
Alignment explanation
Indices: 11351968--11352217 Score: 385
Period size: 130 Copynumber: 1.9 Consensus size: 130
11351958 ATCTATAGCG
*
11351968 GCGTTTTTGAGGAAGCGCCGTTATTGCCACTGAAGCTCAGAATAAACGACGCCGTTCGGCTTAAT
1 GCGTTTTTGAGGAAGCGCCGCTATTGCCACTGAAGCTCAGAATAAACGACGCCGTTCGGCTTAAT
* * * * *
11352033 CTTTTAGCGGCGTTTTTGTACAAACGCCGCTATAAGTCGACCTATAGCGGCGCTTCCTTAAAAAC
66 CTTTTAGCGGCATTTTTATAAAAACGCCGCTATAAGTAGACCTATAGCGGAGCTTCCTTAAAAAC
* * *
11352098 GCGTTTTTGATGAAGCGCCGCTATTGCCACTGAAGCTC-GCAATAAACGACGTCGTTTGGCTTAA
1 GCGTTTTTGAGGAAGCGCCGCTATTGCCACTGAAGCTCAG-AATAAACGACGCCGTTCGGCTTAA
* *
11352162 TCTTTTAGTGGCATTTTTATAAAAACGCCGCTATAGGTAGACCTATAGCGGAGCTT
65 TCTTTTAGCGGCATTTTTATAAAAACGCCGCTATAAGTAGACCTATAGCGGAGCTT
11352218 TAGTAAAAAC
Statistics
Matches: 108, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
129 1 0.01
130 107 0.99
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (130 bp):
GCGTTTTTGAGGAAGCGCCGCTATTGCCACTGAAGCTCAGAATAAACGACGCCGTTCGGCTTAAT
CTTTTAGCGGCATTTTTATAAAAACGCCGCTATAAGTAGACCTATAGCGGAGCTTCCTTAAAAAC
Found at i:11352248 original size:40 final size:40
Alignment explanation
Indices: 11352204--11352283 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
11352194 ATAGGTAGAC
* *
11352204 CTATAGCGGAGCTTTAGTAAAAACACCGCTAATACTCAAT
1 CTATAGCGGAGCTTTAGAAAAAACACCGCTAATACCCAAT
* * * *
11352244 CTATAGCGGCGTTTTTGAAAAAACGCCGCTAATACCCAAT
1 CTATAGCGGAGCTTTAGAAAAAACACCGCTAATACCCAAT
11352284 TTATTCAATT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (40 bp):
CTATAGCGGAGCTTTAGAAAAAACACCGCTAATACCCAAT
Found at i:11356630 original size:5 final size:5
Alignment explanation
Indices: 11356620--11356648 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
11356610 TTTATGTGTT
11356620 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
11356649 CAAAAATTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:11361341 original size:29 final size:29
Alignment explanation
Indices: 11361308--11361363 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
11361298 GATTAAAACA
*
11361308 AGCCCTAAGGGCTTGGTATAGCCACATCG
1 AGCCCCAAGGGCTTGGTATAGCCACATCG
11361337 AGCCCCAAGGGCTTGGTATAGCCACAT
1 AGCCCCAAGGGCTTGGTATAGCCACAT
11361364 TGAAGCTTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (29 bp):
AGCCCCAAGGGCTTGGTATAGCCACATCG
Found at i:11363319 original size:39 final size:39
Alignment explanation
Indices: 11363265--11363341 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
11363255 TTCGTTGTCA
11363265 TCCCTAACTCTTCTGTGACACTTGGAAGGAAAACACACT
1 TCCCTAACTCTTCTGTGACACTTGGAAGGAAAACACACT
11363304 TCCCTAACTCTTCTGTGACACTTGGAAGGAAAACACAC
1 TCCCTAACTCTTCTGTGACACTTGGAAGGAAAACACAC
11363342 ATTGTAAACC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.25
Consensus pattern (39 bp):
TCCCTAACTCTTCTGTGACACTTGGAAGGAAAACACACT
Found at i:11363752 original size:48 final size:48
Alignment explanation
Indices: 11363663--11363756 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
11363653 TTTCTTGGCT
* * *
11363663 TAAAAACGCCTAAGTCAGCCTAACTTCCACCGATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
11363711 TAAAAACGCCTAAGTCAG-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
11363757 AGAATTCCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
47 4 0.10
48 37 0.90
ACGTcount: A:0.39, C:0.28, G:0.14, T:0.19
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:11367618 original size:12 final size:12
Alignment explanation
Indices: 11367603--11367630 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
11367593 ATGCCATTGC
11367603 CAATAGCATCAT
1 CAATAGCATCAT
11367615 CAATAGCATCAT
1 CAATAGCATCAT
11367627 CAAT
1 CAAT
11367631 TTCAATGGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.25, G:0.07, T:0.25
Consensus pattern (12 bp):
CAATAGCATCAT
Found at i:11369778 original size:31 final size:31
Alignment explanation
Indices: 11369705--11369778 Score: 78
Period size: 31 Copynumber: 2.4 Consensus size: 31
11369695 GTTTTGGCCT
* *
11369705 AGTTCAATCCTTAATGCTATCAAGCATTCCC
1 AGTTCAATCCTTAACGCTATCAAGCATTCAC
* * * *
11369736 AATTTAGTCCTTAACGTTATC-AGTCATTCAC
1 AGTTCAATCCTTAACGCTATCAAG-CATTCAC
11369767 AGTTCAATCCTT
1 AGTTCAATCCTT
11369779 TGGCCATTAA
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
30 2 0.06
31 31 0.94
ACGTcount: A:0.28, C:0.26, G:0.09, T:0.36
Consensus pattern (31 bp):
AGTTCAATCCTTAACGCTATCAAGCATTCAC
Found at i:11373626 original size:22 final size:22
Alignment explanation
Indices: 11373584--11373626 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
11373574 GGGGGTAGGA
* *
11373584 TTCTGCATTTGTATTTCATATG
1 TTCTGCATCTGTATCTCATATG
*
11373606 TTCTGCATCTGTATCTGATAT
1 TTCTGCATCTGTATCTCATAT
11373627 ACTCTGTATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (22 bp):
TTCTGCATCTGTATCTCATATG
Found at i:11381531 original size:27 final size:22
Alignment explanation
Indices: 11381476--11381521 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
11381466 TTTGATTATC
*
11381476 TGATATTGTATAATCTGATGTT
1 TGATATTATATAATCTGATGTT
11381498 TGATATTATATAATCTGATGTT
1 TGATATTATATAATCTGATGTT
11381520 TG
1 TG
11381522 TACATATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.28, C:0.04, G:0.17, T:0.50
Consensus pattern (22 bp):
TGATATTATATAATCTGATGTT
Found at i:11381540 original size:24 final size:22
Alignment explanation
Indices: 11381484--11381542 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
11381474 TCTGATATTG
*
11381484 TATAATCTGATGTTTGATATTA
1 TATAATCTGATGTTTGACATTA
11381506 TATAATCTGATGTTTGTACATATA
1 TATAATCTGATGTTTG-ACAT-TA
* *
11381530 TTTAATATGATGT
1 TATAATCTGATGT
11381543 CTATTAAGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
22 16 0.50
23 3 0.09
24 13 0.41
ACGTcount: A:0.32, C:0.05, G:0.14, T:0.49
Consensus pattern (22 bp):
TATAATCTGATGTTTGACATTA
Found at i:11381899 original size:22 final size:22
Alignment explanation
Indices: 11381859--11381901 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
11381849 AGGGGTAGGA
* *
11381859 TTCTGCATCTGTATTTGATATG
1 TTCTGCATCTATATATGATATG
*
11381881 TTCTGCATCTATGTATGATAT
1 TTCTGCATCTATATATGATAT
11381902 ACTCCATATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.14, G:0.16, T:0.49
Consensus pattern (22 bp):
TTCTGCATCTATATATGATATG
Found at i:11383637 original size:36 final size:37
Alignment explanation
Indices: 11383528--11384010 Score: 500
Period size: 36 Copynumber: 13.1 Consensus size: 37
11383518 AAAAAAGGAA
* * * *
11383528 TACTGATTTTATTG-AAGTGCTC-AACAAGCAATATG
1 TACTGATTCTACTGAAAGTGCTCAAACGAGCAATATC
* *
11383563 TACT-AGTTCTACTGAAAATGGTCAAACGAGCAATATC
1 TACTGA-TTCTACTGAAAGTGCTCAAACGAGCAATATC
* * *
11383600 TACTGATTCTACTGAAAGAGCT-GAACAAGCAATATC
1 TACTGATTCTACTGAAAGTGCTCAAACGAGCAATATC
* * * *
11383636 TACTGATCCTACTGAATA-TGTTCAAACAAGCAATGTC
1 TACTGATTCTACTGAA-AGTGCTCAAACGAGCAATATC
*
11383673 TACTGATTCTACTAAAAGTGCTCAAACGAGCAATATC
1 TACTGATTCTACTGAAAGTGCTCAAACGAGCAATATC
11383710 TACTGATTCTACTGAAAGTGCTC-AACGAGCAATATC
1 TACTGATTCTACTGAAAGTGCTCAAACGAGCAATATC
* * * *
11383746 TACTAATCCTACTGAATGTGCTCAAACGAGCAATTTC
1 TACTGATTCTACTGAAAGTGCTCAAACGAGCAATATC
* * *
11383783 TAGTGGTTCTACTG-AAGTGCTCAAACGAGAAATATC
1 TACTGATTCTACTGAAAGTGCTCAAACGAGCAATATC
* * *
11383819 TATTGATTCTACTAAAAGTGCTC-AACGAGCAATAAC
1 TACTGATTCTACTGAAAGTGCTCAAACGAGCAATATC
* * * *
11383855 TACCGATCCTACT-AAATGTGCTCAAACGAGCATTGTC
1 TACTGATTCTACTGAAA-GTGCTCAAACGAGCAATATC
*
11383892 TACTGATTCTACTG-ATGTGCTCAAACGAGCAATATC
1 TACTGATTCTACTGAAAGTGCTCAAACGAGCAATATC
* * *
11383928 TACTAATTCTACTGAATAGTTGCTCAAATGAGCAGTATC
1 TACTGATTCTACTGAA-AG-TGCTCAAACGAGCAATATC
* * * *
11383967 CACTGATTATACTGAATGCTTGCTCAAACGAGCATTATC
1 TACTGATTCTACTGAAAG--TGCTCAAACGAGCAATATC
*
11384006 CACTG
1 TACTG
11384011 GTTATACTAA
Statistics
Matches: 373, Mismatches: 59, Indels: 28
0.81 0.13 0.06
Matches are distributed among these distances:
34 1 0.00
35 13 0.03
36 157 0.42
37 146 0.39
38 3 0.01
39 53 0.14
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (37 bp):
TACTGATTCTACTGAAAGTGCTCAAACGAGCAATATC
Found at i:11383648 original size:73 final size:74
Alignment explanation
Indices: 11383528--11384010 Score: 480
Period size: 73 Copynumber: 6.6 Consensus size: 74
11383518 AAAAAAGGAA
* * * * *
11383528 TACTGATTTTATTG-AAGTGCTC-AACAAGCAATATGTACT-AGTTCTACTGAAAATGGTCAAAC
1 TACTGATTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGA-TTCTACTGAAAATGCTCAAAC
11383590 GAGCAATATC
65 GAGCAATATC
* * * * * * *
11383600 TACTGATTCTACTGAAAGAGCT-GAACAAGCAATATCTACTGATCCTACTGAATATGTTCAAACA
1 TACTGATTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGATTCTACTGAAAATGCTCAAACG
*
11383664 AGCAATGTC
66 AGCAATATC
* *
11383673 TACTGATTCTACTAAAAGTGCTCAAACGAGCAATATCTACTGATTCTACTGAAAGTGCTC-AACG
1 TACTGATTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGATTCTACTGAAAATGCTCAAACG
11383737 AGCAATATC
66 AGCAATATC
* * * * * * *
11383746 TACTAATCCTACTGAATGTGCTCAAACGAGCAATTTCTAGTGGTTCTACTG-AAGTGCTCAAACG
1 TACTGATTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGATTCTACTGAAAATGCTCAAACG
*
11383810 AGAAATATC
66 AGCAATATC
* * * * * *
11383819 TATTGATTCTACTAAAAGTGCTC-AACGAGCAATAACTACCGATCCTACT-AAATGTGCTCAAAC
1 TACTGATTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGATTCTACTGAAA-ATGCTCAAAC
* *
11383882 GAGCATTGTC
65 GAGCAATATC
* * *
11383892 TACTGATTCTACTG-ATGTGCTCAAACGAGCAATATCTACTAATTCTACTGAATAGTTGCTCAAA
1 TACTGATTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGATTCTACTGAA-A-ATGCTCAAA
* *
11383956 TGAGCAGTATC
64 CGAGCAATATC
* * * * *
11383967 CACTGATTATACTGAATGCTTGCTCAAACGAGCATTATCCACTG
1 TACTGATTCTACTGAAAG--TGCTCAAACGAGCAATATCTACTG
11384011 GTTATACTAA
Statistics
Matches: 340, Mismatches: 58, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
72 49 0.14
73 204 0.60
74 34 0.10
75 29 0.09
76 3 0.01
78 21 0.06
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (74 bp):
TACTGATTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGATTCTACTGAAAATGCTCAAACG
AGCAATATC
Found at i:11383843 original size:109 final size:109
Alignment explanation
Indices: 11383540--11384000 Score: 534
Period size: 109 Copynumber: 4.2 Consensus size: 109
11383530 CTGATTTTAT
* * * * *
11383540 TGAA-GTGCTC-AACAAGCAATATGTACT-AGTTCTACTGAAAATGGTCAAACGAGCAATATCTA
1 TGAATGTGCTCAAACGAGCAATTTCTACTGA-TTCTACTG-AAGTGCTCAAACGAGCAATATCTA
* * * *
11383602 CTGATTCTACTGAAAGAGCTGAACAAGCAATATCTACTGATCCTAC
64 CTGATTCTACTAAAAGTGCTCAACGAGCAATATCTACTGATCCTAC
* * * * *
11383648 TGAATATGTTCAAACAAGCAATGTCTACTGATTCTACTAAAAGTGCTCAAACGAGCAATATCTAC
1 TGAATGTGCTCAAACGAGCAATTTCTACTGATTCTACT-GAAGTGCTCAAACGAGCAATATCTAC
* *
11383713 TGATTCTACTGAAAGTGCTCAACGAGCAATATCTACTAATCCTAC
65 TGATTCTACTAAAAGTGCTCAACGAGCAATATCTACTGATCCTAC
* * * *
11383758 TGAATGTGCTCAAACGAGCAATTTCTAGTGGTTCTACTGAAGTGCTCAAACGAGAAATATCTATT
1 TGAATGTGCTCAAACGAGCAATTTCTACTGATTCTACTGAAGTGCTCAAACGAGCAATATCTACT
* *
11383823 GATTCTACTAAAAGTGCTCAACGAGCAATAACTACCGATCCTAC
66 GATTCTACTAAAAGTGCTCAACGAGCAATATCTACTGATCCTAC
* *
11383867 TAAATGTGCTCAAACGAGC-ATTGTCTACTGATTCTACTGATGTGCTCAAACGAGCAATATCTAC
1 TGAATGTGCTCAAACGAGCAATT-TCTACTGATTCTACTGAAGTGCTCAAACGAGCAATATCTAC
* * * * * **
11383931 TAATTCTACTGAATAGTTGCTCAAATGAGCAGTATCCACTGATTATAC
65 TGATTCTACT-AAAAG-TGCTC-AACGAGCAATATCTACTGATCCTAC
11383979 TGAATGCTTGCTCAAACGAGCA
1 TGAATG--TGCTCAAACGAGCA
11384001 TTATCCACTG
Statistics
Matches: 302, Mismatches: 40, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
108 7 0.02
109 131 0.43
110 122 0.40
111 6 0.02
112 23 0.08
114 13 0.04
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (109 bp):
TGAATGTGCTCAAACGAGCAATTTCTACTGATTCTACTGAAGTGCTCAAACGAGCAATATCTACT
GATTCTACTAAAAGTGCTCAACGAGCAATATCTACTGATCCTAC
Found at i:11385644 original size:19 final size:17
Alignment explanation
Indices: 11385617--11385663 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
11385607 TGATGTCATA
11385617 ATTTGAAAAAAATAAAAAT
1 ATTT-AAAAAAA-AAAAAT
*
11385636 ATTTAAAAATAAAAAAT
1 ATTTAAAAAAAAAAAAT
11385653 ATTTACAAAAA
1 ATTTA-AAAAA
11385664 TTATTTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 11 0.44
18 10 0.40
19 4 0.16
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (17 bp):
ATTTAAAAAAAAAAAAT
Found at i:11385650 original size:17 final size:16
Alignment explanation
Indices: 11385624--11385682 Score: 61
Period size: 16 Copynumber: 3.8 Consensus size: 16
11385614 ATAATTTGAA
11385624 AAAAATAAAAATATTT
1 AAAAATAAAAATATTT
11385640 AAAAATAAAAAATATTT
1 AAAAAT-AAAAATATTT
* *
11385657 --ACA-AAAATTATTT
1 AAAAATAAAAATATTT
*
11385670 AAAAATTAAAATA
1 AAAAATAAAAATA
11385683 ATAGTAAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
13 9 0.26
15 4 0.12
16 11 0.32
17 10 0.29
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.31
Consensus pattern (16 bp):
AAAAATAAAAATATTT
Found at i:11385707 original size:17 final size:17
Alignment explanation
Indices: 11385623--11385708 Score: 50
Period size: 19 Copynumber: 4.7 Consensus size: 17
11385613 CATAATTTGA
*
11385623 AAAAAATAAAAAT-ATT
1 AAAAAATTAAAATAATT
* * *
11385639 TAAAAATAAAAAATATTT
1 AAAAAAT-TAAAATAATT
11385657 ACAAAAATTATTTAAA-AATT
1 A-AAAAATTA---AAATAATT
11385677 AAAATAATAGTAAAATAATT
1 AAAA-AAT--TAAAATAATT
11385697 AAAAAATTAAAA
1 AAAAAATTAAAA
11385709 ATTGTAAAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 19
0.70 0.06 0.24
Matches are distributed among these distances:
16 6 0.11
17 11 0.20
18 3 0.05
19 15 0.27
20 15 0.27
21 3 0.05
22 2 0.04
ACGTcount: A:0.69, C:0.01, G:0.01, T:0.29
Consensus pattern (17 bp):
AAAAAATTAAAATAATT
Found at i:11385710 original size:7 final size:8
Alignment explanation
Indices: 11385622--11385729 Score: 54
Period size: 8 Copynumber: 12.0 Consensus size: 8
11385612 TCATAATTTG
*
11385622 AAAAAAAT
1 AAAAAATT
11385630 AAAAATATT
1 AAAAA-ATT
* *
11385639 TAAAAATA
1 AAAAAATT
11385647 AAAAATATTT
1 AAAAA-A-TT
11385657 ACAAAAATT
1 A-AAAAATT
11385666 ATTTAAAAATT
1 A---AAAAATT
11385677 AAAATAATAGT
1 AAAA-AAT--T
11385688 AAAATAATT
1 AAAA-AATT
11385697 AAAAAATT
1 AAAAAATT
*
11385705 AAAAATTGT
1 AAAAAAT-T
*
11385714 AAAAATTT
1 AAAAAATT
*
11385722 AATAAATT
1 AAAAAATT
11385730 TTATAAATCA
Statistics
Matches: 81, Mismatches: 9, Indels: 20
0.74 0.08 0.18
Matches are distributed among these distances:
8 31 0.38
9 26 0.32
10 3 0.04
11 21 0.26
ACGTcount: A:0.66, C:0.01, G:0.02, T:0.31
Consensus pattern (8 bp):
AAAAAATT
Found at i:11385716 original size:17 final size:18
Alignment explanation
Indices: 11385696--11385729 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
11385686 GTAAAATAAT
11385696 TAAAAAATTAA-AAATTG
1 TAAAAAATTAATAAATTG
*
11385713 TAAAAATTTAATAAATT
1 TAAAAAATTAATAAATT
11385730 TTATAAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (18 bp):
TAAAAAATTAATAAATTG
Found at i:11386165 original size:19 final size:19
Alignment explanation
Indices: 11386118--11386166 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
11386108 TTTAAAAATA
* *
11386118 TTAAAATTTCTAATATGTT
1 TTAAAATTTTTAATAAGTT
11386137 TTAAAATTTTTAATAAGTT
1 TTAAAATTTTTAATAAGTT
*
11386156 TTAATATTTTT
1 TTAAAATTTTT
11386167 TTATATTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (19 bp):
TTAAAATTTTTAATAAGTT
Found at i:11386175 original size:18 final size:20
Alignment explanation
Indices: 11386142--11386195 Score: 69
Period size: 18 Copynumber: 2.8 Consensus size: 20
11386132 ATGTTTTAAA
11386142 ATTTTTAATAAGTTTTAATATT
1 ATTTTT-ATAA-TTTTAATATT
11386164 -TTTTTAT-ATTTT-ATATT
1 ATTTTTATAATTTTAATATT
11386181 ATTTTTATAATTTTA
1 ATTTTTATAATTTTA
11386196 TAATAATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
17 5 0.17
18 11 0.38
19 6 0.21
20 2 0.07
21 5 0.17
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (20 bp):
ATTTTTATAATTTTAATATT
Found at i:11386204 original size:20 final size:20
Alignment explanation
Indices: 11386141--11386205 Score: 64
Period size: 19 Copynumber: 3.3 Consensus size: 20
11386131 TATGTTTTAA
*
11386141 AATTTTTAATAAGTTT-TAAT
1 AATTTTT-ATAATTTTATAAT
*
11386161 -ATTTTTTTATATTTTAT-AT
1 AATTTTTATA-ATTTTATAAT
*
11386180 TATTTTTATAATTTTATAAT
1 AATTTTTATAATTTTATAAT
11386200 AATTTT
1 AATTTT
11386206 AATTTTAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
18 2 0.05
19 19 0.51
20 16 0.43
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.65
Consensus pattern (20 bp):
AATTTTTATAATTTTATAAT
Found at i:11386205 original size:19 final size:18
Alignment explanation
Indices: 11386165--11386221 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 18
11386155 TTTAATATTT
* *
11386165 TTTTATATTTTATATTAT
1 TTTTATATTTTATAATAA
11386183 TTTTATAATTTTATAATAA
1 TTTTAT-ATTTTATAATAA
*
11386202 TTTTA-ATTTTAAAAT-A
1 TTTTATATTTTATAATAA
11386218 TTTT
1 TTTT
11386222 TGGAATATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
16 5 0.14
17 9 0.26
18 6 0.17
19 15 0.43
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTTATATTTTATAATAA
Found at i:11386217 original size:17 final size:16
Alignment explanation
Indices: 11386188--11386221 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
11386178 ATTATTTTTA
*
11386188 TAATTTTATAATAATTT
1 TAATTTTAAAAT-ATTT
11386205 TAATTTTAAAATATTT
1 TAATTTTAAAATATTT
11386221 T
1 T
11386222 TGGAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTTAAAATATTT
Found at i:11386222 original size:17 final size:17
Alignment explanation
Indices: 11386135--11386222 Score: 61
Period size: 19 Copynumber: 4.9 Consensus size: 17
11386125 TTCTAATATG
11386135 TTTTAAAAT-TTTTAATAA
1 TTTTAAAATATTTT--TAA
* *
11386153 GTTTTAATATTTTTTTATA
1 -TTTTAAAATATTTTTA-A
* *
11386172 TTTTATATTATTTTTATAA
1 TTTTAAAATA-TTTT-TAA
* *
11386191 TTTTATAATAATTTTAA
1 TTTTAAAATATTTTTAA
11386208 TTTTAAAATATTTTT
1 TTTTAAAATATTTTT
11386223 GGAATATTTT
Statistics
Matches: 56, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
17 16 0.29
18 11 0.20
19 23 0.41
20 6 0.11
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (17 bp):
TTTTAAAATATTTTTAA
Found at i:11389998 original size:26 final size:26
Alignment explanation
Indices: 11389955--11390027 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 26
11389945 TCTCATCCCT
* *
11389955 ATTTTACCCCTAGCAAAATTTTGACA
1 ATTTTACCTCTAGTAAAATTTTGACA
* *
11389981 ATTTTACCTCTGGTAAAATTTTGACG
1 ATTTTACCTCTAGTAAAATTTTGACA
* * *
11390007 AGTTTGCCTCTTGTAAAATTT
1 ATTTTACCTCTAGTAAAATTT
11390028 CAAGAAAATA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (26 bp):
ATTTTACCTCTAGTAAAATTTTGACA
Found at i:11396151 original size:42 final size:41
Alignment explanation
Indices: 11396089--11396234 Score: 157
Period size: 42 Copynumber: 3.5 Consensus size: 41
11396079 AAGATGCCAT
* *
11396089 TGCCATATCCCAGACGTGGTCTTACATGAGATCTCACATCGA
1 TGCCATATCCCAGACATGGTCTTACATGAAATCTCAC-TCGA
* * * * *
11396131 TGCCATATCCCAAATATGGTCTTATATGAAATCTTATTTCGA
1 TGCCATATCCCAGACATGGTCTTACATGAAATCTCA-CTCGA
* * * *
11396173 TGCCATGTCCCAGACGTGGTCTTACACGAAATCTCATCTCAA
1 TGCCATATCCCAGACATGGTCTTACATGAAATCTCA-CTCGA
*
11396215 TGCCATATCCCAGATATGGT
1 TGCCATATCCCAGACATGGT
11396235 TATATATGAT
Statistics
Matches: 84, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
42 84 1.00
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.30
Consensus pattern (41 bp):
TGCCATATCCCAGACATGGTCTTACATGAAATCTCACTCGA
Found at i:11396232 original size:84 final size:84
Alignment explanation
Indices: 11396089--11396243 Score: 233
Period size: 84 Copynumber: 1.8 Consensus size: 84
11396079 AAGATGCCAT
* * *
11396089 TGCCATATCCCAGACGTGGTCTTACATGAGATCTCACATCGATGCCATATCCCAAATATGGTCT-
1 TGCCATATCCCAGACGTGGTCTTACACGAAATCTCACATCAATGCCATATCCCAAATATGGT-TA
11396153 TATATGAAATCTTATTTCGA
65 TATATGAAATCTTATTTCGA
* *
11396173 TGCCATGTCCCAGACGTGGTCTTACACGAAATCTCATC-TCAATGCCATATCCCAGATATGGTTA
1 TGCCATATCCCAGACGTGGTCTTACACGAAATCTCA-CATCAATGCCATATCCCAAATATGGTTA
11396237 TATATGA
65 TATATGA
11396244 TAGCACATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
83 1 0.02
84 62 0.97
85 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (84 bp):
TGCCATATCCCAGACGTGGTCTTACACGAAATCTCACATCAATGCCATATCCCAAATATGGTTAT
ATATGAAATCTTATTTCGA
Found at i:11410116 original size:14 final size:14
Alignment explanation
Indices: 11410097--11410125 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
11410087 AAAGAATAGC
11410097 TATGGATTTTGTTT
1 TATGGATTTTGTTT
11410111 TATGGATTTTGTTT
1 TATGGATTTTGTTT
11410125 T
1 T
11410126 TGGTTTTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.00, G:0.21, T:0.66
Consensus pattern (14 bp):
TATGGATTTTGTTT
Found at i:11429264 original size:26 final size:26
Alignment explanation
Indices: 11429159--11429295 Score: 112
Period size: 26 Copynumber: 5.2 Consensus size: 26
11429149 AATCTTACGA
* **
11429159 ACTCATACTTGATATTAGTCCTTGTGG
1 ACTCATACTTGA-AATAGTCCTTGCAG
* *
11429186 ACTCATGCTTGAAATAGTCCTTGCTG
1 ACTCATACTTGAAATAGTCCTTGCAG
* * * *
11429212 AGTCATACATGGAATAGTCATTGCAG
1 ACTCATACTTGAAATAGTCCTTGCAG
* *
11429238 ACTCATACTTGAAATAGCCCTTACAG
1 ACTCATACTTGAAATAGTCCTTGCAG
* * * *
11429264 ACTCTTGCTTAAAAGATAGTCATTGCAG
1 ACTCATACTT-GAA-ATAGTCCTTGCAG
11429292 ACTC
1 ACTC
11429296 TTGTATAAAG
Statistics
Matches: 86, Mismatches: 22, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
26 59 0.69
27 13 0.15
28 14 0.16
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (26 bp):
ACTCATACTTGAAATAGTCCTTGCAG
Found at i:11433273 original size:46 final size:46
Alignment explanation
Indices: 11433109--11433270 Score: 175
Period size: 46 Copynumber: 3.5 Consensus size: 46
11433099 GCCCATGAGC
* * *
11433109 GAACTCGGACTCAACTCAATGAGCTCTGG-CATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTC-GGACGTTCGCATCCATAAAT
* * * * * ** *
11433155 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACG-TTCGCATCCAT-AAAT
*
11433202 GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAAT
1 GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAAT
11433248 GAACTCGGACTCAACTCAACGAG
1 GAACTCGGACTCAACTCAACGAG
11433271 TTCAGATACC
Statistics
Matches: 92, Mismatches: 20, Indels: 8
0.77 0.17 0.07
Matches are distributed among these distances:
45 2 0.02
46 55 0.60
47 35 0.38
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAAT
Found at i:11436335 original size:48 final size:48
Alignment explanation
Indices: 11436264--11436645 Score: 297
Period size: 48 Copynumber: 8.0 Consensus size: 48
11436254 GACATTTGGG
* * ** *
11436264 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGTGTTGGCCA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * * * *
11436312 TGATATGAGAGCCAGTGTAAGACCATGTTTGGAAGATGGAATCAGCGA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * * * * * *
11436360 TGTTGTGAGAACCAGTGTAAGACCATGTTTAGAACATGACATCGGCAA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * ***
11436408 TG-TAATGAAAGCCAGTGTAAGACCATGTCTGGGACATGGCGTC-TATA
1 TGAT-ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * * * *
11436455 TTGATATGTGCGCTAGTGTAAAACCATGTCTGCGATATGGCATCGGCCA
1 -TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* **
11436504 T-ATTTTGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-AACA
1 TGA-TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * * * *
11436551 TTAAGACGAGAGCTAGTGTAAGACCATATCTGGGACATGGCATCGGCCT
1 -TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * *
11436600 TGACATGTGATCCAGTGTAAGACCATGT-TTGGAGCATGGCATCGGC
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGA-CATGGCATCGGC
11436646 AATTCACCCT
Statistics
Matches: 259, Mismatches: 66, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
47 9 0.03
48 246 0.95
49 4 0.02
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
Found at i:11436541 original size:144 final size:142
Alignment explanation
Indices: 11436274--11436591 Score: 329
Period size: 144 Copynumber: 2.2 Consensus size: 142
11436264 TGATATGTGT
* * *
11436274 GCCAGTGTAAGACCATGTCTGGGACATGGTGTTGGCCATGATATGAGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCGTT-GACATGATATGAGAGCCAGTGTAAAACCATG
* * * * *
11436339 TTTGGAAGATGGAATCAGCGATGTTGTGAGAACCAGTGTAAGACCATGTTTAGAACATGACATCG
65 TCTGGAAGATGGAATCAGCCATATTGTGAGAACCAGTGTAAGACCATGTCTAGAACATGACATCA
*
11436404 GCAATGTAATGA-A-A
130 AC-AT-TAA-GACAGA
* * * *
11436418 GCCAGTGTAAGACCATGTCTGGGACATGGCGTCT-ATATTGATATGTGCGCTAGTGTAAAACCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCGT-TGACA-TGATATGAGAGCCAGTGTAAAACCAT
* * * * * * * *
11436482 GTCTGCG-ATATGGCATCGGCCATATTTTGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
64 GTCTG-GAAGATGGAATCAGCCATATTGTGAGAACCAGTGTAAGACCATGTCTAGAACATGACAT
11436546 CAACATTAAGACGAGA
128 CAACATTAAGAC-AGA
* *
11436562 GCTAGTGTAAGACCATATCTGGGACATGGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGC
11436592 ATCGGCCTTG
Statistics
Matches: 145, Mismatches: 23, Indels: 12
0.81 0.13 0.07
Matches are distributed among these distances:
141 2 0.01
142 3 0.02
143 4 0.03
144 134 0.92
145 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (142 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCGTTGACATGATATGAGAGCCAGTGTAAAACCATGT
CTGGAAGATGGAATCAGCCATATTGTGAGAACCAGTGTAAGACCATGTCTAGAACATGACATCAA
CATTAAGACAGA
Found at i:11441469 original size:14 final size:14
Alignment explanation
Indices: 11441450--11441479 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
11441440 TGATTGTTTT
11441450 TAATCTAATTTAAC
1 TAATCTAATTTAAC
11441464 TAATCTAATTTAAC
1 TAATCTAATTTAAC
11441478 TA
1 TA
11441480 CGAACGCAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.13, G:0.00, T:0.43
Consensus pattern (14 bp):
TAATCTAATTTAAC
Found at i:11448448 original size:16 final size:16
Alignment explanation
Indices: 11448423--11448453 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11448413 ATTCGGTTGA
11448423 GAAAACTATTTAATTG
1 GAAAACTATTTAATTG
*
11448439 GAAAATTATTTAATT
1 GAAAACTATTTAATT
11448454 TAAATTAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.42
Consensus pattern (16 bp):
GAAAACTATTTAATTG
Found at i:11450464 original size:3 final size:3
Alignment explanation
Indices: 11450458--11450495 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
11450448 AAAGAGGAGG
11450458 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A-A AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
11450496 GTCAAGTGTC
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:11450968 original size:20 final size:22
Alignment explanation
Indices: 11450929--11450969 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
11450919 GAGAGGTCTA
11450929 GGAAAAAGTGGACTTAGCTATAT
1 GGAAAAAGTGGAC-TAGCTATAT
11450952 GGAAAAAG-GGA-TAGCTAT
1 GGAAAAAGTGGACTAGCTAT
11450970 GATAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
22 3 0.17
23 8 0.44
ACGTcount: A:0.41, C:0.07, G:0.29, T:0.22
Consensus pattern (22 bp):
GGAAAAAGTGGACTAGCTATAT
Found at i:11453493 original size:25 final size:25
Alignment explanation
Indices: 11453465--11453512 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
11453455 ATAGTACAAC
11453465 AAATGATAA-ACAAATGGATTAAACT
1 AAATGATAATACAAA-GGATTAAACT
* *
11453490 AAATTATAATATAAAGGATTAAA
1 AAATGATAATACAAAGGATTAAA
11453513 GTGCAAAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.58, C:0.04, G:0.10, T:0.27
Consensus pattern (25 bp):
AAATGATAATACAAAGGATTAAACT
Found at i:11453740 original size:30 final size:30
Alignment explanation
Indices: 11453704--11453764 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
11453694 CTAATGAGAG
11453704 TTATTTTGTTATTTTTACCTTGTTGTTACA
1 TTATTTTGTTATTTTTACCTTGTTGTTACA
11453734 TTATTTTGTTATTTTTACCTTGTTGTTACA
1 TTATTTTGTTATTTTTACCTTGTTGTTACA
11453764 T
1 T
11453765 ACTTTTAGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.16, C:0.10, G:0.10, T:0.64
Consensus pattern (30 bp):
TTATTTTGTTATTTTTACCTTGTTGTTACA
Found at i:11466011 original size:21 final size:21
Alignment explanation
Indices: 11465983--11466038 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
11465973 AACAGCGGTG
*
11465983 GCAGTGAGATTAGTTACTGTA
1 GCAGTGAGATTAGATACTGTA
* *
11466004 GCGGTGAGATTGGATACTGTA
1 GCAGTGAGATTAGATACTGTA
11466025 GCAGTGAGATTAGA
1 GCAGTGAGATTAGA
11466039 AACAATGGTG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.29, C:0.09, G:0.34, T:0.29
Consensus pattern (21 bp):
GCAGTGAGATTAGATACTGTA
Found at i:11478918 original size:21 final size:21
Alignment explanation
Indices: 11478893--11478936 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
11478883 ATTGGGCTGT
* *
11478893 TACACTCCACCTGTTTTGGAG
1 TACACTCCACCTGCTGTGGAG
11478914 TACACTCCACCTGCTGTGGAG
1 TACACTCCACCTGCTGTGGAG
11478935 TA
1 TA
11478937 TTGCTCGTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.30
Consensus pattern (21 bp):
TACACTCCACCTGCTGTGGAG
Found at i:11483346 original size:15 final size:15
Alignment explanation
Indices: 11483323--11483363 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
11483313 TATTAAAACA
*
11483323 ACAATAACAATATTT
1 ACAAGAACAATATTT
11483338 ACAAGAACAATATTT
1 ACAAGAACAATATTT
11483353 ACAAGAA-AATA
1 ACAAGAACAATA
11483364 AAAATAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
14 4 0.16
15 21 0.84
ACGTcount: A:0.59, C:0.12, G:0.05, T:0.24
Consensus pattern (15 bp):
ACAAGAACAATATTT
Found at i:11483416 original size:29 final size:29
Alignment explanation
Indices: 11483363--11483423 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
11483353 ACAAGAAAAT
* *
11483363 AAAAATAATGTACTATTACTATAATA-AG
1 AAAAATAATGTACTATAACGATAATAGAG
*
11483391 AAAAATAATGTATTTATAACGATAATAGAG
1 AAAAATAATGTA-CTATAACGATAATAGAG
11483421 AAA
1 AAA
11483424 TAACAATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 12 0.43
29 11 0.39
30 5 0.18
ACGTcount: A:0.56, C:0.05, G:0.10, T:0.30
Consensus pattern (29 bp):
AAAAATAATGTACTATAACGATAATAGAG
Found at i:11483723 original size:26 final size:27
Alignment explanation
Indices: 11483687--11483739 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
11483677 ACATAATACG
*
11483687 GTATTTAAAAAATATATATAT-GTATA
1 GTATTTAAAAAATATATACATAGTATA
*
11483713 GTATTTAAAAAATGTATACATAGTATA
1 GTATTTAAAAAATATATACATAGTATA
11483740 TATACTAGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.49, C:0.02, G:0.09, T:0.40
Consensus pattern (27 bp):
GTATTTAAAAAATATATACATAGTATA
Found at i:11483875 original size:34 final size:34
Alignment explanation
Indices: 11483831--11483975 Score: 104
Period size: 34 Copynumber: 4.4 Consensus size: 34
11483821 TATAGTTATT
*
11483831 AAAAAGATATATACGTAAGATAATATGAAAAATA
1 AAAAATATATATACGTAAGATAATATGAAAAATA
** * * * *
11483865 AAAAATATATATAAATAATATAGTATTAAAGATA
1 AAAAATATATATACGTAAGATAATATGAAAAATA
* * * * * *
11483899 TATACATAACATATA--TAA-A-AATA--CAATATT
1 -AAAAAT-ATATATACGTAAGATAATATGAAAAATA
*
11483929 AAAAAGATATATACGTAAGATAATATGAAAAATA
1 AAAAATATATATACGTAAGATAATATGAAAAATA
11483963 AAAAATATATATA
1 AAAAATATATATA
11483976 TGTATAGTAT
Statistics
Matches: 81, Mismatches: 22, Indels: 16
0.68 0.18 0.13
Matches are distributed among these distances:
28 6 0.07
29 3 0.04
30 7 0.09
31 1 0.01
32 7 0.09
33 1 0.01
34 46 0.57
35 4 0.05
36 6 0.07
ACGTcount: A:0.61, C:0.03, G:0.07, T:0.28
Consensus pattern (34 bp):
AAAAATATATATACGTAAGATAATATGAAAAATA
Found at i:11483984 original size:269 final size:269
Alignment explanation
Indices: 11483692--11484337 Score: 1120
Period size: 269 Copynumber: 2.4 Consensus size: 269
11483682 ATACGGTATT
11483692 TAAAAAATATATATATGTATAGTATTTAAAAAATGTATACATAGTATATATACTAGGAATAATAA
1 TAAAAAATATATATATGTATAGTATTTAAAAAATGTATACATAGTATATATACTAGGAATAATAA
11483757 TAATAGTAAAAACAACCATTAATAATGCTACATAAATAGATATATAGTAATAGTATATACATAAT
66 TAATAGTAAAAACAACCATTAATAATGCTACATAAATAGATATATAGTAATAGTATATACATAAT
11483822 ATAGTTATTAAAAAGATATATACGTAAGATAATATGAAAAATAAAAAATATATATAAATAATATA
131 ATAGTTATTAAAAAGATATATACGTAAGATAATATGAAAAATAAAAAATATATATAAATAATATA
11483887 GTATTAAAGATATATACATAACATATATAAAAATACAATATTAAAAAGATATATACGTAAGATAA
196 GTATTAAAGATATATACATAACATATATAAAAATACAATATTAAAAAGATATATACGTAAGATAA
11483952 TATGAAAAA
261 TATGAAAAA
11483961 TAAAAAATATATATATGTATAGTATTTAAAAAATGTATACATAGTATATATACTAGGAATAATAA
1 TAAAAAATATATATATGTATAGTATTTAAAAAATGTATACATAGTATATATACTAGGAATAATAA
11484026 TAATAGTAAAAACAACCATTAATAATGCTACATAAATAGATATATAGTAATAGTATATACATAAT
66 TAATAGTAAAAACAACCATTAATAATGCTACATAAATAGATATATAGTAATAGTATATACATAAT
11484091 ATAGTTATTAAAAAGATATATACGTAAGATAATATGAAAAATAAAAAATATATATAAATAATATA
131 ATAGTTATTAAAAAGATATATACGTAAGATAATATGAAAAATAAAAAATATATATAAATAATATA
11484156 GTATTAAAGATATATACATAACATATATAAAAATACAATATTAAAAAGATATATACGTAAGATAA
196 GTATTAAAGATATATACATAACATATATAAAAATACAATATTAAAAAGATATATACGTAAGATAA
11484221 TATGAAAAA
261 TATGAAAAA
* * * *
11484230 TAAAAAATATATATAAATAATATAGTA-TTAAAAATAT-T-TACATAATATATACATATTAGAAA
1 TAAAAAATATATAT--AT-GTATAGTATTTAAAAA-ATGTATACATAGTATAT--ATACTAGGAA
* * *
11484292 TAATAATAAT-GTTAAAAAAATAACTATTAATAATACTACATAAATA
60 TAATAATAATAG-T--AAAAACAACCATTAATAATGCTACATAAATA
11484338 TATACATATA
Statistics
Matches: 361, Mismatches: 7, Indels: 13
0.95 0.02 0.03
Matches are distributed among these distances:
269 283 0.78
270 11 0.03
271 11 0.03
272 28 0.08
274 28 0.08
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (269 bp):
TAAAAAATATATATATGTATAGTATTTAAAAAATGTATACATAGTATATATACTAGGAATAATAA
TAATAGTAAAAACAACCATTAATAATGCTACATAAATAGATATATAGTAATAGTATATACATAAT
ATAGTTATTAAAAAGATATATACGTAAGATAATATGAAAAATAAAAAATATATATAAATAATATA
GTATTAAAGATATATACATAACATATATAAAAATACAATATTAAAAAGATATATACGTAAGATAA
TATGAAAAA
Found at i:11484153 original size:13 final size:13
Alignment explanation
Indices: 11484131--11484280 Score: 60
Period size: 13 Copynumber: 11.1 Consensus size: 13
11484121 AATATGAAAA
*
11484131 ATAAAAAATATAT
1 ATAAATAATATAT
11484144 ATAAATAATATAGT
1 ATAAATAATATA-T
* *
11484158 AT-TA-AAGATAT
1 ATAAATAATATAT
* *
11484169 ATACATAACATAT
1 ATAAATAATATAT
*
11484182 ATAAA-AATACAAT
1 ATAAATAATA-TAT
*
11484195 ATTAAAAAGATATAT
1 A-TAAATA-ATATAT
*
11484210 ACGTAAGATAATATGAAAA
1 A--TAA-ATAATAT---AT
*
11484229 ATAAAAAATATAT
1 ATAAATAATATAT
11484242 ATAAATAATATAGT
1 ATAAATAATATA-T
11484256 ATTAAA-AATAT-T
1 A-TAAATAATATAT
*
11484268 -TACATAATATAT
1 ATAAATAATATAT
11484280 A
1 A
11484281 CATATTAGAA
Statistics
Matches: 104, Mismatches: 16, Indels: 34
0.68 0.10 0.22
Matches are distributed among these distances:
10 3 0.03
11 8 0.08
12 11 0.11
13 37 0.36
14 14 0.13
15 8 0.08
16 16 0.15
17 5 0.05
19 2 0.02
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.32
Consensus pattern (13 bp):
ATAAATAATATAT
Found at i:11484215 original size:98 final size:98
Alignment explanation
Indices: 11484096--11484280 Score: 343
Period size: 98 Copynumber: 1.9 Consensus size: 98
11484086 ATAATATAGT
11484096 TATTAAAAAGATATATACGTAAGATAATATGAAAAATAAAAAATATATATAAATAATATAGTATT
1 TATTAAAAAGATATATACGTAAGATAATATGAAAAATAAAAAATATATATAAATAATATAGTATT
*
11484161 AAAGATATATACATAACATATATAAAAATACAA
66 AAAAATATATACATAACATATATAAAAATACAA
11484194 TATTAAAAAGATATATACGTAAGATAATATGAAAAATAAAAAATATATATAAATAATATAGTATT
1 TATTAAAAAGATATATACGTAAGATAATATGAAAAATAAAAAATATATATAAATAATATAGTATT
* *
11484259 AAAAATATTTACATAATATATA
66 AAAAATATATACATAACATATA
11484281 CATATTAGAA
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 84 1.00
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.31
Consensus pattern (98 bp):
TATTAAAAAGATATATACGTAAGATAATATGAAAAATAAAAAATATATATAAATAATATAGTATT
AAAAATATATACATAACATATATAAAAATACAA
Found at i:11484263 original size:34 final size:34
Alignment explanation
Indices: 11484100--11484265 Score: 110
Period size: 34 Copynumber: 5.0 Consensus size: 34
11484090 TATAGTTATT
* ** * *
11484100 AAAAAGATATATACGTAAGATAATATGAAAAATA
1 AAAAATATATATAAATAATATAATATTAAAAATA
* *
11484134 AAAAATATATATAAATAATATAGTATTAAAGAT-
1 AAAAATATATATAAATAATATAATATTAAAAATA
* * * * *
11484167 ----ATATACATAACAT-ATATAAAAATACAATATT
1 AAAAATATATATAA-ATAATATAATATTA-AAAATA
* ** * *
11484198 AAAAAGATATATACGTAAGATAATATGAAAAATA
1 AAAAATATATATAAATAATATAATATTAAAAATA
*
11484232 AAAAATATATATAAATAATATAGTATTAAAAATA
1 AAAAATATATATAAATAATATAATATTAAAAATA
11484266 TTTACATAAT
Statistics
Matches: 96, Mismatches: 28, Indels: 16
0.69 0.20 0.11
Matches are distributed among these distances:
29 17 0.18
30 6 0.06
34 59 0.61
35 14 0.15
ACGTcount: A:0.61, C:0.03, G:0.07, T:0.29
Consensus pattern (34 bp):
AAAAATATATATAAATAATATAATATTAAAAATA
Found at i:11484366 original size:33 final size:31
Alignment explanation
Indices: 11484328--11484417 Score: 87
Period size: 31 Copynumber: 2.8 Consensus size: 31
11484318 TTAATAATAC
11484328 TACAT-AAATATATACATATATATTAAGAATAAA
1 TACATAAAATATATACATATATA-TAAG--TAAA
**
11484361 TACATAATAATATTATA-ATAT-TATAAGTATG
1 TACATAA-AATA-TATACATATATATAAGTAAA
11484392 TACATAAAATATATACATATAATATA
1 TACATAAAATATATACATAT-ATATA
11484418 GTTATTGAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
29 4 0.08
30 8 0.16
31 9 0.18
32 4 0.08
33 9 0.18
34 3 0.06
35 8 0.16
36 4 0.08
ACGTcount: A:0.54, C:0.06, G:0.03, T:0.37
Consensus pattern (31 bp):
TACATAAAATATATACATATATATAAGTAAA
Found at i:11484459 original size:23 final size:25
Alignment explanation
Indices: 11484397--11484489 Score: 82
Period size: 23 Copynumber: 3.7 Consensus size: 25
11484387 GTATGTACAT
* * *
11484397 AAAATATATACATATAATATAGTTATTG
1 AAAATATATAC--ATAATACAG-TAGTA
*
11484425 AAAATATGTACATAATACA-T-GTA
1 AAAATATATACATAATACAGTAGTA
* *
11484448 AAAATATATACATAATATAGTATTA
1 AAAATATATACATAATACAGTAGTA
*
11484473 AAAATATTTACATAATA
1 AAAATATATACATAATA
11484490 TATACATATT
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
23 18 0.33
24 2 0.04
25 18 0.33
26 7 0.13
28 10 0.18
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.35
Consensus pattern (25 bp):
AAAATATATACATAATACAGTAGTA
Found at i:11484474 original size:25 final size:25
Alignment explanation
Indices: 11484397--11484491 Score: 104
Period size: 25 Copynumber: 3.8 Consensus size: 25
11484387 GTATGTACAT
*
11484397 AAAATATATACATATAATATAGTTATTG
1 AAAATATATAC--ATAATATAG-TATTA
* * *
11484425 AAAATATGTACATAATACA-T-GTA
1 AAAATATATACATAATATAGTATTA
11484448 AAAATATATACATAATATAGTATTA
1 AAAATATATACATAATATAGTATTA
*
11484473 AAAATATTTACATAATATA
1 AAAATATATACATAATATA
11484492 TACATATTAG
Statistics
Matches: 57, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
23 18 0.32
24 2 0.04
25 20 0.35
26 7 0.12
28 10 0.18
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (25 bp):
AAAATATATACATAATATAGTATTA
Found at i:11490562 original size:12 final size:12
Alignment explanation
Indices: 11490541--11490574 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
11490531 TATATATTTT
*
11490541 AAAATTATATAA
1 AAAATAATATAA
11490553 AAAATAATATAA
1 AAAATAATATAA
*
11490565 AAATTAATAT
1 AAAATAATAT
11490575 GGGCGGGCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:11496964 original size:21 final size:21
Alignment explanation
Indices: 11496922--11496964 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
11496912 TCTCTTAAAG
**
11496922 AAAAAAACTTACACATTTAAA
1 AAAAAAACTTACACATAAAAA
11496943 AAAAAAACTTTACA-ATAAAAA
1 AAAAAAAC-TTACACATAAAAA
11496964 A
1 A
11496965 CAACAACAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.67, C:0.12, G:0.00, T:0.21
Consensus pattern (21 bp):
AAAAAAACTTACACATAAAAA
Found at i:11497071 original size:15 final size:15
Alignment explanation
Indices: 11497051--11497158 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
11497041 TTTATGGAAA
11497051 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* * **
11497066 ATCAAATA-ATAGAA
1 ATCAAAGATATGGGT
11497080 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
11497096 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
11497110 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
11497126 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
11497140 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
11497156 ATC
1 ATC
11497159 GAGATATTGG
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:11497088 original size:30 final size:30
Alignment explanation
Indices: 11497045--11497168 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
11497035 TCCATATTTA
* *
11497045 TGGAAAATCAAAGATATGGGTATCAAATAA
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
11497075 TAGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
11497105 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
11497135 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
11497166 TGG
1 TGG
11497169 CATAATAAAA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 80 0.91
31 8 0.09
ACGTcount: A:0.44, C:0.06, G:0.24, T:0.26
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:11501764 original size:15 final size:15
Alignment explanation
Indices: 11501744--11501851 Score: 87
Period size: 15 Copynumber: 7.2 Consensus size: 15
11501734 TTTATGGAAA
11501744 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
11501759 ATCAAATA-ATGGAAA
1 ATCAAAGATATGG-GT
11501774 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
11501789 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
11501803 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
11501819 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
11501833 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
11501849 ATC
1 ATC
11501852 GAGATATTGG
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 12 0.17
15 45 0.65
16 12 0.17
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:11501773 original size:30 final size:30
Alignment explanation
Indices: 11501737--11501851 Score: 194
Period size: 30 Copynumber: 3.8 Consensus size: 30
11501727 ATCCATATTT
11501737 ATGGAAAATCAAAGATATGGGTATCAAATA
1 ATGGAAAATCAAAGATATGGGTATCAAATA
11501767 ATGGAAAATCAAAGATATGGGTATCAAATA
1 ATGGAAAATCAAAGATATGGGTATCAAATA
* *
11501797 TTGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAATCAAAGATATGGGTATCAAATA
* *
11501827 TTGGAAAGTCAAAGATATGGGTATC
1 ATGGAAAATCAAAGATATGGGTATC
11501852 GAGATATTGG
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 83 1.00
ACGTcount: A:0.45, C:0.07, G:0.23, T:0.25
Consensus pattern (30 bp):
ATGGAAAATCAAAGATATGGGTATCAAATA
Found at i:11504710 original size:61 final size:61
Alignment explanation
Indices: 11504642--11504832 Score: 373
Period size: 61 Copynumber: 3.1 Consensus size: 61
11504632 TCACGTCAAT
11504642 AAAATTTATGTTAATTTTTAAAATAATTTTAAAAAAATCAAATTTCAAATGCTAAAAGACG
1 AAAATTTATGTTAATTTTTAAAATAATTTTAAAAAAATCAAATTTCAAATGCTAAAAGACG
11504703 AAAATTTATGTTAATTTTTAAAATAATTTTAAAAAAATCAAATTTCAAATGCTAAAAGACG
1 AAAATTTATGTTAATTTTTAAAATAATTTTAAAAAAATCAAATTTCAAATGCTAAAAGACG
*
11504764 AAAATTTATGTTAAGTTTTAAAATAATTTTAAAAAAATCAAATTTCAAATGCTAAAAGACG
1 AAAATTTATGTTAATTTTTAAAATAATTTTAAAAAAATCAAATTTCAAATGCTAAAAGACG
11504825 AAAATTTA
1 AAAATTTA
11504833 GTGGAGGGTT
Statistics
Matches: 129, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
61 129 1.00
ACGTcount: A:0.51, C:0.06, G:0.07, T:0.36
Consensus pattern (61 bp):
AAAATTTATGTTAATTTTTAAAATAATTTTAAAAAAATCAAATTTCAAATGCTAAAAGACG
Found at i:11510586 original size:16 final size:16
Alignment explanation
Indices: 11510565--11510597 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
11510555 AGATTATGTA
11510565 GTGAAAGGTTATTTGT
1 GTGAAAGGTTATTTGT
*
11510581 GTGAAAGTTTATTTGT
1 GTGAAAGGTTATTTGT
11510597 G
1 G
11510598 ATTGAGACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.45
Consensus pattern (16 bp):
GTGAAAGGTTATTTGT
Found at i:11517215 original size:295 final size:294
Alignment explanation
Indices: 11516666--11517227 Score: 645
Period size: 295 Copynumber: 1.9 Consensus size: 294
11516656 TAGAGTTCTC
*** * *
11516666 GTAGAATTTTGATTGCCTTTGAATAAAAGAGGGCTATTGAAACTGGTTTGGACCTCCTTTCTACA
1 GTAGAATTTTGACCACCTTTGAATAAAAGAGAGCTATTGAAACTGGTTTGAACCTCCTTTCTACA
* * * *
11516731 ACTGAATAGGATCGAAAGGTGGCTTTTTTTAGAAACAAATTTTGACCTCCTTTCCTTAGTTGAAC
66 ACTGAATA-GATCGAAAGGTGACTTTCTTCAGAAACAAATTTTGACCTCCTTTCCTCAGTTGAAC
* * * *
11516796 TAGATTAGAAGGTGACTTTATTCATAACTGATATGGTGTTCGTCCAAATTTCTTCAAGTTTTTCA
130 TAGATAAGAAGGAGACTTTATTCAGAACTGATATGGTGTTCGTCCAAATTTCTTCAAGTTGTTCA
**** * * * *
11516861 GTTTCCTTAAATACTTATTTAGAGAACATTTGAAGATCTGAACTTGTGAATGTGTGTTGAATGGC
195 GAAGACTTAAAGACTTATTCAGAGAACATTTGAAGATCTGAACTTATGAATGAGTGTTGAATGGC
11516926 TTAGAGGCTAGTCACTTCAAAAAAAGAGAATTGTT
260 TTAGAGGCTAGTCACTTCAAAAAAAGAGAATTGTT
* *
11516961 GTAGAATTTTGACCACCTTTGAATAAAATAGAGCTCTTGAAAC-GAGTTTGAACCTCCTTTCTAC
1 GTAGAATTTTGACCACCTTTGAATAAAAGAGAGCTATTGAAACTG-GTTTGAACCTCCTTTCTAC
* * * *
11517025 AATTGAACT-GACTCGAAATGTGACTTTCTTCAGAAACAAATTTTGACCTCTTTTCCTCGGTTGA
65 AACTGAA-TAGA-TCGAAAGGTGACTTTCTTCAGAAACAAATTTTGACCTCCTTTCCTCAGTTGA
* * *
11517089 ACTGGATAAGAAGGCAG-CTTTATTCAGAACT-AGTATGGTGTTTGT-TAGAATTTCTTCAAGTT
128 ACTAGATAAGAAGG-AGACTTTATTCAGAACTGA-TATGGTGTTCGTCCA-AATTTCTTCAAGTT
* * * * * *
11517151 GTTCA-AAGACTTAATAGATTTGTTCAGA-AA-ATTTTTATGCATTTGAATTTATGAATGAGTGT
190 GTTCAGAAGACTTAA-AGACTTATTCAGAGAACA-TTTGAAG-ATCTGAACTTATGAATGAGTGT
*
11517213 TGAATGGCTTGGAGG
252 TGAATGGCTTAGAGG
11517228 TTACTGTTTT
Statistics
Matches: 221, Mismatches: 37, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
293 1 0.00
294 17 0.08
295 201 0.91
296 2 0.01
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (294 bp):
GTAGAATTTTGACCACCTTTGAATAAAAGAGAGCTATTGAAACTGGTTTGAACCTCCTTTCTACA
ACTGAATAGATCGAAAGGTGACTTTCTTCAGAAACAAATTTTGACCTCCTTTCCTCAGTTGAACT
AGATAAGAAGGAGACTTTATTCAGAACTGATATGGTGTTCGTCCAAATTTCTTCAAGTTGTTCAG
AAGACTTAAAGACTTATTCAGAGAACATTTGAAGATCTGAACTTATGAATGAGTGTTGAATGGCT
TAGAGGCTAGTCACTTCAAAAAAAGAGAATTGTT
Found at i:11521327 original size:32 final size:32
Alignment explanation
Indices: 11521290--11521353 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
11521280 AATCAACAAA
11521290 AAGAATAACTTAAATTATCAAATTCCAAAATT
1 AAGAATAACTTAAATTATCAAATTCCAAAATT
11521322 AAGAATAACTTAAATTATCAAATTCCAAAATT
1 AAGAATAACTTAAATTATCAAATTCCAAAATT
11521354 GAGTAACCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.53, C:0.12, G:0.03, T:0.31
Consensus pattern (32 bp):
AAGAATAACTTAAATTATCAAATTCCAAAATT
Found at i:11524478 original size:6 final size:6
Alignment explanation
Indices: 11524467--11524493 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
11524457 AAATCAGAAG
11524467 AAAATA AAAATA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAA
11524494 GATATTCCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Done.