Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56482370
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1659275 characters in sequence are not A, C, G, or T
File 38 of 172
Found at i:11865829 original size:13 final size:13
Alignment explanation
Indices: 11865786--11865829 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
11865776 CGTTTGCCTA
11865786 TTTTGTTTCTTTT
1 TTTTGTTTCTTTT
*
11865799 CTTTGTTTCATTTCT
1 TTTTGTTTC-TTT-T
*
11865814 TTTTCTTTCTTTT
1 TTTTGTTTCTTTT
11865827 TTT
1 TTT
11865830 ACTATATATA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
13 12 0.46
14 6 0.23
15 8 0.31
ACGTcount: A:0.02, C:0.14, G:0.05, T:0.80
Consensus pattern (13 bp):
TTTTGTTTCTTTT
Found at i:11869636 original size:53 final size:53
Alignment explanation
Indices: 11869556--11869662 Score: 187
Period size: 53 Copynumber: 2.0 Consensus size: 53
11869546 GTAGGTTTGA
11869556 ATTTAGAATTTAATTCACACAGGTATGGGACACGGGCATGTCCCTAGATGCTT
1 ATTTAGAATTTAATTCACACAGGTATGGGACACGGGCATGTCCCTAGATGCTT
* * *
11869609 ATTTAGAATTTAATTCACACGGGTATGGGATAGGGGCATGTCCCTAGATGCTT
1 ATTTAGAATTTAATTCACACAGGTATGGGACACGGGCATGTCCCTAGATGCTT
11869662 A
1 A
11869663 GGCTGTATGT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (53 bp):
ATTTAGAATTTAATTCACACAGGTATGGGACACGGGCATGTCCCTAGATGCTT
Found at i:11877267 original size:44 final size:45
Alignment explanation
Indices: 11877175--11877300 Score: 146
Period size: 44 Copynumber: 2.8 Consensus size: 45
11877165 CGGATGTCAC
* * **
11877175 ATGCATCGCATCCATAATAAACTCAGACCAACTCAACGAGCTTGG
1 ATGCATCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCAG
*
11877220 ATGC-TCGTATCCATAATGAACTCGGACCAACTCAACGAGCTCAG
1 ATGCATCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCAG
* * ** * *
11877264 ATGCTTCACATATATCATGAACTTGGACCAACTCAAC
1 ATGCATCGCATCCATAATGAACTCGGACCAACTCAAC
11877301 AAGTTCGGAT
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
44 39 0.57
45 30 0.43
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.22
Consensus pattern (45 bp):
ATGCATCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCAG
Found at i:11877299 original size:45 final size:45
Alignment explanation
Indices: 11877194--11877350 Score: 147
Period size: 45 Copynumber: 3.5 Consensus size: 45
11877184 ATCCATAATA
* * ** ** *
11877194 AACTCAGACCAACTCAACGAGCTTGGATGC-TCGTATCCATAATG
1 AACTCGGACCAACTCAACGAGCTCGGATGCTTCACATATATCATG
*
11877238 AACTCGGACCAACTCAACGAGCTCAGATGCTTCACATATATCATG
1 AACTCGGACCAACTCAACGAGCTCGGATGCTTCACATATATCATG
* * * * **
11877283 AACTTGGACCAACTCAACAAGTTCGGAT-TTCTCACATATATCACA
1 AACTCGGACCAACTCAACGAGCTCGGATGCT-TCACATATATCATG
* *
11877328 AACTCAGACCAACTCAATGAGCT
1 AACTCGGACCAACTCAACGAGCT
11877351 TAAATTTCTA
Statistics
Matches: 91, Mismatches: 20, Indels: 3
0.80 0.18 0.03
Matches are distributed among these distances:
44 28 0.31
45 63 0.69
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (45 bp):
AACTCGGACCAACTCAACGAGCTCGGATGCTTCACATATATCATG
Found at i:11884930 original size:49 final size:48
Alignment explanation
Indices: 11884854--11884949 Score: 147
Period size: 49 Copynumber: 2.0 Consensus size: 48
11884844 AGAGAGAAAG
* *
11884854 AGAGGGGGGGGGGGGGGGAAAAAAAAAAGGCTTTTGTTCTTTTATAANT
1 AGAGAGGGGGGGGGGGAGAAAAAAAAAAGGCTTTTGTTCTTTTATAA-T
* *
11884903 AGAGAGGGGGGGGGGGAGTAAATAAAAAGGCTTTTGTTCTTTTATAA
1 AGAGAGGGGGGGGGGGAGAAAAAAAAAAGGCTTTTGTTCTTTTATAA
11884950 AATAAAAATA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.31, C:0.04, G:0.38, T:0.26
Consensus pattern (48 bp):
AGAGAGGGGGGGGGGGAGAAAAAAAAAAGGCTTTTGTTCTTTTATAAT
Found at i:11897455 original size:27 final size:27
Alignment explanation
Indices: 11897424--11897601 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
11897414 TAAATTGTAC
11897424 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
11897451 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
11897477 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
11897505 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
11897533 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
11897560 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
11897587 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
11897602 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:11897538 original size:82 final size:81
Alignment explanation
Indices: 11897425--11897580 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
11897415 AAATTGTACA
* *
11897425 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
11897489 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
11897506 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
11897571 TGCGAGTTGA
65 TGCGAATTGA
11897581 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:11897592 original size:82 final size:81
Alignment explanation
Indices: 11897421--11897601 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
11897411 GATTAAATTG
* *
11897421 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
11897486 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
11897502 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
11897566 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
11897584 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
11897602 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:11902317 original size:15 final size:15
Alignment explanation
Indices: 11902297--11902326 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
11902287 ATCAATTGAC
11902297 TTAATTCATTTTTAT
1 TTAATTCATTTTTAT
11902312 TTAATTCATTTTTAT
1 TTAATTCATTTTTAT
11902327 CATGTTCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.67
Consensus pattern (15 bp):
TTAATTCATTTTTAT
Found at i:11911414 original size:47 final size:47
Alignment explanation
Indices: 11911362--11911455 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
11911352 TGTGAAAGTT
*
11911362 ACAACTAAAGGTTCGTGAAAAGTTTTTCCATCCATTGTGAACCAATC
1 ACAACTAAAAGTTCGTGAAAAGTTTTTCCATCCATTGTGAACCAATC
*
11911409 ACAACTAAAAGTTCGTGAAAAGTTTTTCCATCCATTTTGAACCAATC
1 ACAACTAAAAGTTCGTGAAAAGTTTTTCCATCCATTGTGAACCAATC
11911456 TTCTACTCAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.31
Consensus pattern (47 bp):
ACAACTAAAAGTTCGTGAAAAGTTTTTCCATCCATTGTGAACCAATC
Found at i:11918699 original size:22 final size:22
Alignment explanation
Indices: 11918671--11918715 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
11918661 CCTTGTGACC
*
11918671 TTATTTTGAATCATGCATGGTT
1 TTATTTTGAATCATGCACGGTT
11918693 TTATTTTGAATCATGCACGGTT
1 TTATTTTGAATCATGCACGGTT
11918715 T
1 T
11918716 GACACATAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.22, C:0.11, G:0.18, T:0.49
Consensus pattern (22 bp):
TTATTTTGAATCATGCACGGTT
Found at i:11918944 original size:19 final size:18
Alignment explanation
Indices: 11918908--11918948 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
11918898 AACACTTTTA
* *
11918908 AATTCATATTTCACATAT
1 AATTCATAATTCAAATAT
11918926 AATTCATCAATTCAAATAT
1 AATTCAT-AATTCAAATAT
11918945 AATT
1 AATT
11918949 TAATCACAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (18 bp):
AATTCATAATTCAAATAT
Found at i:11920969 original size:21 final size:20
Alignment explanation
Indices: 11920945--11920983 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
11920935 CTTGTATATT
*
11920945 TATCAACAAGCATTCAAAATC
1 TATCAACAAACA-TCAAAATC
*
11920966 TATCATCAAACATCAAAA
1 TATCAACAAACATCAAAA
11920984 CACATGTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.51, C:0.23, G:0.03, T:0.23
Consensus pattern (20 bp):
TATCAACAAACATCAAAATC
Found at i:11922562 original size:26 final size:26
Alignment explanation
Indices: 11922496--11922586 Score: 101
Period size: 26 Copynumber: 3.3 Consensus size: 26
11922486 GTTAAGAAGG
*
11922496 AAAAGCCTTTGTGGTGTAATATGAAAAAA
1 AAAAGCCTTTGTGGCGTAATATG---AAA
11922525 AAAAGCCTTTGTGGCGTAATATGAAA
1 AAAAGCCTTTGTGGCGTAATATGAAA
* * *
11922551 GAAAGCTTTTGTGGCGCAATATGAAA
1 AAAAGCCTTTGTGGCGTAATATGAAA
*
11922577 TAAATGCCTT
1 -AAAAGCCTT
11922587 AAGGTCGCAC
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 26 0.48
27 6 0.11
29 22 0.41
ACGTcount: A:0.38, C:0.11, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGCCTTTGTGGCGTAATATGAAA
Found at i:11931485 original size:32 final size:32
Alignment explanation
Indices: 11931444--11931507 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
11931434 ACTCCACTCG
11931444 TTCACAATCATAACAAGATTTAGGCTTAAATA
1 TTCACAATCATAACAAGATTTAGGCTTAAATA
11931476 TTCACAATCATAACAAGATTTAGGCTTAAATA
1 TTCACAATCATAACAAGATTTAGGCTTAAATA
11931508 ATAATAAGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (32 bp):
TTCACAATCATAACAAGATTTAGGCTTAAATA
Found at i:11936439 original size:15 final size:15
Alignment explanation
Indices: 11936415--11936452 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
11936405 AACAAAATTT
11936415 AAAAGAAAAAGAAAGA
1 AAAAGAAAAAG-AAGA
11936431 AAAAGAAAAAGAAGA
1 AAAAGAAAAAGAAGA
11936446 AAAAGAA
1 AAAAGAA
11936453 TGAGACGCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 11 0.50
16 11 0.50
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (15 bp):
AAAAGAAAAAGAAGA
Found at i:11938094 original size:48 final size:50
Alignment explanation
Indices: 11937984--11938220 Score: 258
Period size: 48 Copynumber: 4.9 Consensus size: 50
11937974 AGGGTAAGAT
*
11937984 GCCGATGCCATG-TCTCAAACATGGTCTTACACTGGCTCTCATATATC-AG
1 GCCGATGCCATGTTC-CAAACATGGTCTTACACTAGCTCTCATATATCAAG
* * *
11938033 TGCCGATGTCATGTTCCAAACATGGTCTTACACTAGC-C-CATATGTCGAG
1 -GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATATCAAG
* * * * * *
11938082 GTCGATGGCATG-TCCTAGACATGGGCTTACACTAGCTCT--TATATAAAT
1 GCCGATGCCATGTTCC-AAACATGGTCTTACACTAGCTCTCATATATCAAG
* *
11938130 GCCGATGCAATGTTCCAAACATGGTCTTACACTAGCTCTC--ATATCAAT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATATCAAG
* *
11938178 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATA
11938221 ACCCTAGTAT
Statistics
Matches: 158, Mismatches: 20, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
47 3 0.02
48 114 0.72
49 7 0.04
50 32 0.20
51 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.29
Consensus pattern (50 bp):
GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATATCAAG
Found at i:11938184 original size:96 final size:96
Alignment explanation
Indices: 11937982--11938215 Score: 289
Period size: 96 Copynumber: 2.4 Consensus size: 96
11937972 AAAGGGTAAG
* *
11937982 ATGCCGATGCCATGT-CTCAAACATGGTCTTACACTGGCTCTCATATATCAGTGCCGATGTCATG
1 ATGCCGATGCCATGTCCT-AAACATGGTCTTACACTGGCTCT-ATATATAAATGCCGATGTCATG
*
11938046 TTCCAAACATGGTCTTACACTAGCCCATATGTCG
64 TTCCAAACATGGTCTTACACTAGCCCATA-GTCA
* * * * * *
11938080 AGGTCGATGGCATGTCCTAGACATGGGCTTACACTAGCTCT-TATATAAATGCCGATG-CAATGT
1 ATGCCGATGCCATGTCCTAAACATGGTCTTACACTGGCTCTATATATAAATGCCGATGTC-ATGT
11938143 TCCAAACATGGTCTTACACTAGCTCTCATA-TCA
65 TCCAAACATGGTCTTACACTAGC-C-CATAGTCA
11938176 ATGCCGATGCCATGTTCC-AAACATGGTCTTACACTGGCTC
1 ATGCCGATGCCATG-TCCTAAACATGGTCTTACACTGGCTC
11938216 ACATAACCCT
Statistics
Matches: 116, Mismatches: 15, Indels: 12
0.81 0.10 0.08
Matches are distributed among these distances:
95 1 0.01
96 73 0.63
97 4 0.03
98 36 0.31
99 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (96 bp):
ATGCCGATGCCATGTCCTAAACATGGTCTTACACTGGCTCTATATATAAATGCCGATGTCATGTT
CCAAACATGGTCTTACACTAGCCCATAGTCA
Found at i:11940124 original size:5 final size:5
Alignment explanation
Indices: 11940109--11940148 Score: 53
Period size: 5 Copynumber: 7.8 Consensus size: 5
11940099 ATTTGGTACT
* *
11940109 TTGATA TTGAA TTGAA TTGAA TTGAA TTGGA TTAAA TTGA
1 TTGA-A TTGAA TTGAA TTGAA TTGAA TTGAA TTGAA TTGA
11940149 TATATATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
5 26 0.87
6 4 0.13
ACGTcount: A:0.38, C:0.00, G:0.20, T:0.42
Consensus pattern (5 bp):
TTGAA
Found at i:11943944 original size:42 final size:40
Alignment explanation
Indices: 11943865--11943945 Score: 103
Period size: 41 Copynumber: 2.0 Consensus size: 40
11943855 CAAGGTTTTT
11943865 GGACACGGGATAGGACACGGGCATGTGATGGCCGTGTGAG
1 GGACACGGGATAGGACACGGGCATGTGATGGCCGTGTGAG
*
11943905 GGACACGGGCCATA-GACACGGGCGTGTG-TCAGGCCGTGTGA
1 GGACACGGG--ATAGGACACGGGCATGTGAT--GGCCGTGTGA
11943946 AAACCCCTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
40 10 0.28
41 13 0.36
42 13 0.36
ACGTcount: A:0.21, C:0.21, G:0.43, T:0.15
Consensus pattern (40 bp):
GGACACGGGATAGGACACGGGCATGTGATGGCCGTGTGAG
Found at i:11944103 original size:20 final size:21
Alignment explanation
Indices: 11944065--11944103 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
11944055 TTATAATAAC
11944065 CACACGGGCGTGTTGCCCTTT
1 CACACGGGCGTGTTGCCCTTT
11944086 CACACGGGCGTG-TGCCCT
1 CACACGGGCGTGTTGCCCT
11944104 ACTTCAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.36, G:0.31, T:0.23
Consensus pattern (21 bp):
CACACGGGCGTGTTGCCCTTT
Found at i:11947088 original size:16 final size:16
Alignment explanation
Indices: 11947069--11947099 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11947059 CTTCTTCACT
11947069 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
11947085 TACTTACTTACTTAA
1 TACTCACTTACTTAA
11947100 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:11947105 original size:20 final size:20
Alignment explanation
Indices: 11947066--11947105 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
11947056 AAACTTCTTC
* *
11947066 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
11947086 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
11947106 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:11947481 original size:55 final size:53
Alignment explanation
Indices: 11947291--11947545 Score: 245
Period size: 55 Copynumber: 4.8 Consensus size: 53
11947281 ACGCGGGTAC
* * * * *
11947291 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTA---T-CCTT-TTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAG-AA
* *
11947340 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAA
* * *
11947393 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AA
* * * * *
11947448 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAA
*
11947501 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA-CCTT
11947546 AAACCCTAAT
Statistics
Matches: 172, Mismatches: 21, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
49 35 0.20
52 2 0.01
53 47 0.27
54 14 0.08
55 72 0.42
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAA
Found at i:11947482 original size:108 final size:110
Alignment explanation
Indices: 11947338--11947538 Score: 327
Period size: 108 Copynumber: 1.8 Consensus size: 110
11947328 ATCCTTTTGA
* *
11947338 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
11947401 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
11947446 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
11947511 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
11947539 TATCCTTAAA
Statistics
Matches: 85, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.58
109 7 0.08
110 28 0.33
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:11950384 original size:42 final size:42
Alignment explanation
Indices: 11950276--11950433 Score: 165
Period size: 42 Copynumber: 3.7 Consensus size: 42
11950266 ACCAATTCCT
* * *** * *
11950276 TATCCCAGATATGGTCTTATATGTAATCCCATATCGATGCCAA
1 TATCCCAGATATAGTCTTACACAAAATCTCATATCAATGCC-A
* * * *
11950319 TAGCCTAGCTATAGTCTTACACAAAATCTTATATCAATGCCA
1 TATCCCAGATATAGTCTTACACAAAATCTCATATCAATGCCA
* *
11950361 TATCCCAGATATGGTCTTACACAAAATCTCATAT-AGATGTCA
1 TATCCCAGATATAGTCTTACACAAAATCTCATATCA-ATGCCA
*
11950403 TATCCCAGATATAGTCTTACACATAATCTCA
1 TATCCCAGATATAGTCTTACACAAAATCTCA
11950434 GTAACCCTTA
Statistics
Matches: 95, Mismatches: 19, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
41 1 0.01
42 64 0.67
43 30 0.32
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (42 bp):
TATCCCAGATATAGTCTTACACAAAATCTCATATCAATGCCA
Found at i:11950394 original size:85 final size:84
Alignment explanation
Indices: 11950276--11950431 Score: 204
Period size: 85 Copynumber: 1.8 Consensus size: 84
11950266 ACCAATTCCT
* *** * * *
11950276 TATCCCAGATATGGTCTTATATGTAATCCCATATCGATGCCAATAGCCTAGCTATAGTCTTACAC
1 TATCCCAGATATGGTCTTACACAAAATCCCATATAGATGCC-ATAGCCCAGATATAGTCTTACAC
11950341 AAAATCTTATATCAATGCCA
65 AAAATCTTATATCAATGCCA
* * *
11950361 TATCCCAGATATGGTCTTACACAAAATCTCATATAGATGTCATATCCCAGATATAGTCTTACACA
1 TATCCCAGATATGGTCTTACACAAAATCCCATATAGATGCCATAGCCCAGATATAGTCTTACACA
*
11950426 TAATCT
66 AAATCT
11950432 CAGTAACCCT
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
84 26 0.43
85 34 0.57
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (84 bp):
TATCCCAGATATGGTCTTACACAAAATCCCATATAGATGCCATAGCCCAGATATAGTCTTACACA
AAATCTTATATCAATGCCA
Found at i:11958638 original size:5 final size:6
Alignment explanation
Indices: 11958622--11958646 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
11958612 TGTTAAACTC
11958622 TAAAAA TAAAAA TAAAAA TAAAAA T
1 TAAAAA TAAAAA TAAAAA TAAAAA T
11958647 TTGTGACTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
TAAAAA
Found at i:11962855 original size:40 final size:39
Alignment explanation
Indices: 11962770--11962863 Score: 116
Period size: 40 Copynumber: 2.4 Consensus size: 39
11962760 GCTTCTTTTT
* *
11962770 AACTCTTATGAGCTTCTGTTAGTGTGTTTCAGGTGGACC
1 AACTCTTATGAGCTTCTGTTAGCGTATTTCAGGTGGACC
* * **
11962809 AACTCTTATGAGCTTCTGTTTGGCGTATTTCAGTTGGATT
1 AACTCTTATGAGCTTCTG-TTAGCGTATTTCAGGTGGACC
*
11962849 AGCTCTTATGAGCTT
1 AACTCTTATGAGCTT
11962864 TTTTCTGGTG
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 18 0.38
40 29 0.62
ACGTcount: A:0.18, C:0.17, G:0.23, T:0.41
Consensus pattern (39 bp):
AACTCTTATGAGCTTCTGTTAGCGTATTTCAGGTGGACC
Found at i:11963519 original size:16 final size:16
Alignment explanation
Indices: 11963500--11963530 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11963490 AGCTTATGCT
11963500 AAGTAAATGGAATGAA
1 AAGTAAATGGAATGAA
*
11963516 AAGTAAGTGGAATGA
1 AAGTAAATGGAATGA
11963531 TTCATCATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.29, T:0.19
Consensus pattern (16 bp):
AAGTAAATGGAATGAA
Found at i:11964461 original size:43 final size:43
Alignment explanation
Indices: 11964413--11964544 Score: 219
Period size: 43 Copynumber: 3.1 Consensus size: 43
11964403 ATGAAAACTT
*
11964413 GGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCC
1 GGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCC
* *
11964456 GGTGATGTGTATTCGGGCCTTCGTGCCTAGCAAGATTCATGCC
1 GGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCC
* *
11964499 GGTGATGTGTATTCGGGTCTTCGTGCCTAGCAGGCTTAATGCC
1 GGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCC
11964542 GGT
1 GGT
11964545 AATTCGAGCA
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 82 1.00
ACGTcount: A:0.13, C:0.23, G:0.33, T:0.31
Consensus pattern (43 bp):
GGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCC
Found at i:11971227 original size:38 final size:38
Alignment explanation
Indices: 11971142--11971313 Score: 177
Period size: 38 Copynumber: 4.5 Consensus size: 38
11971132 ATAAAATAAA
* *
11971142 TTGTGCT-GAGATTGTATCCGGGCTTAAAGACCCGCAGGCT
1 TTGTGCTGGA-ATTATATCCGGG-TTAAA-TCCCGCAGGCT
* * *
11971182 ATATGCTGGAATTATATCCGGGTTAAATCCGGCAGGCT
1 TTGTGCTGGAATTATATCCGGGTTAAATCCCGCAGGCT
*
11971220 TTGTGCTGGTAA-TGTATCCGGGTTAAATCCCGCAGGCT
1 TTGTGCTGG-AATTATATCCGGGTTAAATCCCGCAGGCT
* * * *
11971258 TCGTGCTAGTATTATATCCGGGTTAAATCCCGCAGGCC
1 TTGTGCTGGAATTATATCCGGGTTAAATCCCGCAGGCT
* * *
11971296 TGGTGTTGGTATTATATC
1 TTGTGCTGGAATTATATC
11971314 TGAGTTTAAA
Statistics
Matches: 112, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
37 1 0.01
38 86 0.77
39 7 0.06
40 16 0.14
41 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.31
Consensus pattern (38 bp):
TTGTGCTGGAATTATATCCGGGTTAAATCCCGCAGGCT
Found at i:11971306 original size:76 final size:77
Alignment explanation
Indices: 11971154--11971342 Score: 211
Period size: 76 Copynumber: 2.4 Consensus size: 77
11971144 GTGCTGAGAT
* * * *
11971154 TGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTATATCCGGGTTAAATCCGGCAGG
1 TGTATCCGGG-TTAAAGTCCCGCAGGCT-TCGTGCTAGAATTATATCCGGGTTAAATCCCGCAGG
* *
11971218 CTTTGTGCTGGTAA
64 CCTGGTGCTGGTAA
*
11971232 TGTATCCGGGTTAAA-TCCCGCAGGCTTCGTGCTAGTATTATATCCGGGTTAAATCCCGCAGGCC
1 TGTATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTAGAATTATATCCGGGTTAAATCCCGCAGGCC
* *
11971296 TGGTGTTGGTAT
66 TGGTGCTGGTAA
* * * * *
11971308 TATATCTGAGTTTAAAGTCCTGTAGGCTTCGTGCT
1 TGTATCCG-GGTTAAAGTCCCGCAGGCTTCGTGCT
11971343 GGTGTTATGT
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
75 1 0.01
76 56 0.60
77 11 0.12
78 26 0.28
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.32
Consensus pattern (77 bp):
TGTATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTAGAATTATATCCGGGTTAAATCCCGCAGGCC
TGGTGCTGGTAA
Found at i:11975249 original size:16 final size:17
Alignment explanation
Indices: 11975216--11975251 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
11975206 TTAATTTTGC
11975216 TTATTTATTTACTATCT
1 TTATTTATTTACTATCT
11975233 TTATTTATTTA-TATCT
1 TTATTTATTTACTATCT
11975249 TTA
1 TTA
11975252 ATTTCATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.25, C:0.08, G:0.00, T:0.67
Consensus pattern (17 bp):
TTATTTATTTACTATCT
Found at i:11975255 original size:17 final size:17
Alignment explanation
Indices: 11975218--11975268 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
11975208 AATTTTGCTT
11975218 ATTTATTTACTATCTTT-
1 ATTTATTTA-TATCTTTA
11975235 ATTTATTTATATCTTTA
1 ATTTATTTATATCTTTA
11975252 ATTTCATTT-TA-CTTTA
1 ATTT-ATTTATATCTTTA
11975268 A
1 A
11975269 CTTGATTCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
16 13 0.41
17 15 0.47
18 4 0.12
ACGTcount: A:0.27, C:0.10, G:0.00, T:0.63
Consensus pattern (17 bp):
ATTTATTTATATCTTTA
Found at i:11976266 original size:25 final size:26
Alignment explanation
Indices: 11976224--11976276 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 26
11976214 AATTTTCAAG
11976224 TAAGTACCTAGA-TTTTTTGTCTTGA
1 TAAGTACCTAGATTTTTTTGTCTTGA
11976249 TAAGTACCTA-ATTTTTTTTTGTCTTGA
1 TAAGTACCTAGA--TTTTTTTGTCTTGA
11976276 T
1 T
11976277 TCGTTTCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 1 0.04
25 10 0.40
27 14 0.56
ACGTcount: A:0.23, C:0.11, G:0.13, T:0.53
Consensus pattern (26 bp):
TAAGTACCTAGATTTTTTTGTCTTGA
Found at i:11979604 original size:20 final size:21
Alignment explanation
Indices: 11979581--11979621 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
11979571 AATAAATTGC
11979581 TTATATTTC-TAAATATAAAT
1 TTATATTTCTTAAATATAAAT
* *
11979601 TTATGTTTCTTATATATAAAT
1 TTATATTTCTTAAATATAAAT
11979622 AAAAATAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (21 bp):
TTATATTTCTTAAATATAAAT
Found at i:11986035 original size:24 final size:24
Alignment explanation
Indices: 11986003--11986051 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
11985993 TTTTCCATGG
11986003 ATGATTCATCAAAAATATCAACTA
1 ATGATTCATCAAAAATATCAACTA
*
11986027 ATGATTCATCAAAAATATCTACTA
1 ATGATTCATCAAAAATATCAACTA
11986051 A
1 A
11986052 CTTTTCTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.49, C:0.16, G:0.04, T:0.31
Consensus pattern (24 bp):
ATGATTCATCAAAAATATCAACTA
Found at i:11988139 original size:27 final size:27
Alignment explanation
Indices: 11988109--11988286 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
11988099 ATATTGAGTC
* * * *
11988109 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
11988136 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
11988163 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
11988191 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
11988218 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
11988245 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
11988272 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
11988287 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:11988248 original size:82 final size:81
Alignment explanation
Indices: 11988130--11988285 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
11988120 TGCTATATAA
* *
11988130 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
11988195 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
11988212 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
11988276 CACTTAGTGC
65 CACTTAGTGC
11988286 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:12018354 original size:27 final size:27
Alignment explanation
Indices: 12018316--12018371 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
12018306 GTCCCCCAAA
12018316 AATGCCAAATAATAAGAAGAAGAAATT
1 AATGCCAAATAATAAGAAGAAGAAATT
*
12018343 AATGCCAAATAATAATAAGAAGAAATT
1 AATGCCAAATAATAAGAAGAAGAAATT
12018370 AA
1 AA
12018372 CATATGCGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.61, C:0.07, G:0.12, T:0.20
Consensus pattern (27 bp):
AATGCCAAATAATAAGAAGAAGAAATT
Found at i:12023844 original size:28 final size:28
Alignment explanation
Indices: 12023811--12023865 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
12023801 TGGGTGTAGA
12023811 TTACGTTTCAAGTACAATATGGGAAAAT
1 TTACGTTTCAAGTACAATATGGGAAAAT
*
12023839 TTACGTTTCAAGTACAATCTGGGAAAA
1 TTACGTTTCAAGTACAATATGGGAAAA
12023866 CTTTCATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (28 bp):
TTACGTTTCAAGTACAATATGGGAAAAT
Found at i:12032249 original size:27 final size:26
Alignment explanation
Indices: 12032219--12032394 Score: 163
Period size: 27 Copynumber: 6.5 Consensus size: 26
12032209 AATTGTACAG
12032219 CACTAAGTGTGCGATTTGACTATGTTA
1 CACTAAGTGTGCGATTTGACTATG-TA
** * *
12032246 CACTAAGTGTGCGAAATGAATATGATG
1 CACTAAGTGTGCGATTTGACTATG-TA
* * **
12032273 CACTAAGTGTGCGAATTGACCATGCGG
1 CACTAAGTGTGCGATTTGACTATG-TA
12032300 CACTAAGTGTGCGAGTTTGACTATGTA
1 CACTAAGTGTGCGA-TTTGACTATGTA
* *
12032327 GCACTAAGTGTGCGATTTGATTACGTA
1 -CACTAAGTGTGCGATTTGACTATGTA
* * *
12032354 GCACTAAGTGTGCGAGTTGATTATATA
1 -CACTAAGTGTGCGATTTGACTATGTA
*
12032381 GCACTGAGTGTGCG
1 -CACTAAGTGTGCG
12032395 GACTCAATAT
Statistics
Matches: 127, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (26 bp):
CACTAAGTGTGCGATTTGACTATGTA
Found at i:12032278 original size:54 final size:54
Alignment explanation
Indices: 12032217--12032394 Score: 191
Period size: 54 Copynumber: 3.3 Consensus size: 54
12032207 TAAATTGTAC
*
12032217 AGCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATG-TACACTAAGTGTGCGAATTGAATATGAT
* * ** * *
12032272 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATG-TACACTAAGTGTGCGA-ATTGAATATGAT
* * * *
12032326 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTA-CACTAAGTGTGCGAATTGAATATGAT
*
12032380 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
12032395 GACTCAATAT
Statistics
Matches: 102, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
54 60 0.59
55 42 0.41
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTTGACTATGTACACTAAGTGTGCGAATTGAATATGAT
Found at i:12032332 original size:82 final size:81
Alignment explanation
Indices: 12032218--12032373 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 81
12032208 AAATTGTACA
*
12032218 GCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
12032282 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
12032299 GCACTAAGTGTGCGAGTTTGACTATG-TAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTTA-CACTAAGTGTGCGAAATGAATACGTAGCACTAAGT
*
12032363 GTGCGAGTTGA
64 GTGCGAATTGA
12032374 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
81 17 0.25
82 49 0.73
83 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:12032385 original size:82 final size:81
Alignment explanation
Indices: 12032214--12032394 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 81
12032204 GATTAAATTG
*
12032214 TACAGCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATACGATGCACTAA
12032279 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
12032295 TGCGGCACTAAGTGTGCGAGTTTGACTATG-TAGCACTAAGTGTGCGATTTGATTACG-TAGCAC
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTTA-CACTAAGTGTGCGAAATGAATACGAT-GCAC
* **
12032358 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
12032377 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
12032395 GACTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
81 20 0.24
82 64 0.76
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:12033346 original size:20 final size:20
Alignment explanation
Indices: 12033321--12033373 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
12033311 GAGGCAAAGC
12033321 ACACGCCTGTGTGCCTAGGG
1 ACACGCCTGTGTGCCTAGGG
12033341 ACACGCCTGTGTGCCTAGGG
1 ACACGCCTGTGTGCCTAGGG
*
12033361 ACACGCCCGTGTG
1 ACACGCCTGTGTG
12033374 TCCCATCCGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.15, C:0.32, G:0.34, T:0.19
Consensus pattern (20 bp):
ACACGCCTGTGTGCCTAGGG
Found at i:12042297 original size:44 final size:42
Alignment explanation
Indices: 12042223--12042307 Score: 100
Period size: 44 Copynumber: 2.0 Consensus size: 42
12042213 AAACTTTTCG
* * * *
12042223 AAGATTACCAATGCTTTAAACATTCGCACACTTAGTGCTTTA
1 AAGATTACCAAAGCTATAAACATTCGCACACATAGCGCTTTA
12042265 AAGATTAGCCAAAGCTATAATA-ATTCCGCACACATAGCGCTTT
1 AAGATTA-CCAAAGCTATAA-ACATT-CGCACACATAGCGCTTT
12042308 CTCAATTAAC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
42 7 0.19
43 13 0.36
44 16 0.44
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.29
Consensus pattern (42 bp):
AAGATTACCAAAGCTATAAACATTCGCACACATAGCGCTTTA
Found at i:12050507 original size:20 final size:20
Alignment explanation
Indices: 12050441--12050507 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
12050431 ATTTTGATAA
* *
12050441 ACATGGTATGTATGATCTGC
1 ACATGATATGTATGATATGC
*
12050461 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
12050481 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
12050501 ACATGAT
1 ACATGAT
12050508 GTATTCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:12050587 original size:25 final size:25
Alignment explanation
Indices: 12050559--12050677 Score: 197
Period size: 25 Copynumber: 4.8 Consensus size: 25
12050549 GGAAGTGTAG
12050559 AAGGGCTTATGCCCCAGTTATGATA
1 AAGGGCTTATGCCCCAGTTATGATA
12050584 AAGGGCTTATGCCCCAGTTATGATA
1 AAGGGCTTATGCCCCAGTTATGATA
*
12050609 AAGGGCTTATACCCCAGTTATGATA
1 AAGGGCTTATGCCCCAGTTATGATA
*
12050634 AAGGGCTTATGCCCCAGTTATTA-A
1 AAGGGCTTATGCCCCAGTTATGATA
*
12050658 AAGGGCTT-TTCCCCAGTTAT
1 AAGGGCTTATGCCCCAGTTAT
12050678 TAAAAGAGGA
Statistics
Matches: 90, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
23 11 0.12
24 9 0.10
25 70 0.78
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (25 bp):
AAGGGCTTATGCCCCAGTTATGATA
Found at i:12050699 original size:48 final size:50
Alignment explanation
Indices: 12050559--12050711 Score: 170
Period size: 50 Copynumber: 3.1 Consensus size: 50
12050549 GGAAGTGTAG
* * *
12050559 AAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTATGATA
1 AAGGGCTTATACCCCAGTTATGATAAAGGGCATAGGCCCCAGTTATGATA
* * *
12050609 AAGGGCTTATACCCCAGTTATGATAAAGGGCTTATGCCCCAGTTATTA-A
1 AAGGGCTTATACCCCAGTTATGATAAAGGGCATAGGCCCCAGTTATGATA
* *
12050658 AAGGGCTT-TTCCCCAGTTATTA-AAAGAGG-ATAGGCCTCCAGTTATATGATA
1 AAGGGCTTATACCCCAGTTATGATAAAG-GGCATAGGCC-CCAG-T-TATGATA
12050709 AAG
1 AAG
12050712 CAGCTATGCT
Statistics
Matches: 91, Mismatches: 7, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
47 9 0.10
48 18 0.20
49 10 0.11
50 50 0.55
51 4 0.04
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (50 bp):
AAGGGCTTATACCCCAGTTATGATAAAGGGCATAGGCCCCAGTTATGATA
Found at i:12050706 original size:75 final size:75
Alignment explanation
Indices: 12050559--12050711 Score: 188
Period size: 75 Copynumber: 2.0 Consensus size: 75
12050549 GGAAGTGTAG
* *
12050559 AAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATACCCC
1 AAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTATGATAAAGGGCATAGACCCC
12050624 AGTTATGATA
66 AGTTATGATA
* * * *
12050634 AAGGGCTTATGCCCCAGTTATTA-AAAGGGCTT-TTCCCCAGTTATTA-AAAGAGG-ATAGGCCT
1 AAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTATGATAAAG-GGCATAGACC-
12050695 CCAGTTATATGATA
64 CCAG-T-TATGATA
12050709 AAG
1 AAG
12050712 CAGCTATGCT
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
72 8 0.12
73 18 0.26
74 10 0.15
75 32 0.47
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (75 bp):
AAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTATGATAAAGGGCATAGACCCC
AGTTATGATA
Found at i:12050931 original size:31 final size:31
Alignment explanation
Indices: 12050896--12050959 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
12050886 CGTTTACAGT
12050896 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
12050927 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
12050958 AA
1 AA
12050960 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:12055432 original size:199 final size:199
Alignment explanation
Indices: 12055092--12055487 Score: 792
Period size: 199 Copynumber: 2.0 Consensus size: 199
12055082 AAGGCGAATG
12055092 TCGTGGCTGATGCGCTAAGTCGAAGGGCTGTGGCGGAATTAAAGGCGATGGTTGCTCGTCTAAGT
1 TCGTGGCTGATGCGCTAAGTCGAAGGGCTGTGGCGGAATTAAAGGCGATGGTTGCTCGTCTAAGT
12055157 TTGTATGACGACGGAAGTTTATTGGCGGAATTGCAAGTAAGACCGACTTAGGTAGAACAGATTAA
66 TTGTATGACGACGGAAGTTTATTGGCGGAATTGCAAGTAAGACCGACTTAGGTAGAACAGATTAA
12055222 GAAGCAACAGTTGGAGGACGAGTCGTTGGTTCATCGGTTTCAGCAAGTTGAGAAGGGGAAAAATC
131 GAAGCAACAGTTGGAGGACGAGTCGTTGGTTCATCGGTTTCAGCAAGTTGAGAAGGGGAAAAATC
12055287 TATT
196 TATT
12055291 TCGTGGCTGATGCGCTAAGTCGAAGGGCTGTGGCGGAATTAAAGGCGATGGTTGCTCGTCTAAGT
1 TCGTGGCTGATGCGCTAAGTCGAAGGGCTGTGGCGGAATTAAAGGCGATGGTTGCTCGTCTAAGT
12055356 TTGTATGACGACGGAAGTTTATTGGCGGAATTGCAAGTAAGACCGACTTAGGTAGAACAGATTAA
66 TTGTATGACGACGGAAGTTTATTGGCGGAATTGCAAGTAAGACCGACTTAGGTAGAACAGATTAA
12055421 GAAGCAACAGTTGGAGGACGAGTCGTTGGTTCATCGGTTTCAGCAAGTTGAGAAGGGGAAAAATC
131 GAAGCAACAGTTGGAGGACGAGTCGTTGGTTCATCGGTTTCAGCAAGTTGAGAAGGGGAAAAATC
12055486 TA
196 TA
12055488 GACTTTGGGT
Statistics
Matches: 197, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
199 197 1.00
ACGTcount: A:0.28, C:0.14, G:0.32, T:0.25
Consensus pattern (199 bp):
TCGTGGCTGATGCGCTAAGTCGAAGGGCTGTGGCGGAATTAAAGGCGATGGTTGCTCGTCTAAGT
TTGTATGACGACGGAAGTTTATTGGCGGAATTGCAAGTAAGACCGACTTAGGTAGAACAGATTAA
GAAGCAACAGTTGGAGGACGAGTCGTTGGTTCATCGGTTTCAGCAAGTTGAGAAGGGGAAAAATC
TATT
Found at i:12058672 original size:11 final size:11
Alignment explanation
Indices: 12058636--12058691 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
12058626 CATGGTATGT
12058636 ATGATATGCAC
1 ATGATATGCAC
* *
12058647 ATGACATG--T
1 ATGATATGCAC
12058656 ATGATATGCAC
1 ATGATATGCAC
*
12058667 ATGATATG--T
1 ATGATATGCAC
12058676 ATGATATGCAC
1 ATGATATGCAC
12058687 ATGAT
1 ATGAT
12058692 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:12058691 original size:20 final size:20
Alignment explanation
Indices: 12058625--12058691 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
12058615 ATTTTGATAA
*
12058625 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
12058645 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
12058665 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
12058685 ACATGAT
1 ACATGAT
12058692 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:12058799 original size:24 final size:24
Alignment explanation
Indices: 12058718--12058909 Score: 260
Period size: 24 Copynumber: 7.9 Consensus size: 24
12058708 TGGGTTGGGT
*
12058718 AAGGGCTTATGCCCCAGTTATGATA
1 AAGGGCTTATGCCCCAGTTATTA-A
*
12058743 AAGGGCTTATGCCCCAGTTATGATA
1 AAGGGCTTATGCCCCAGTTATTA-A
*
12058768 AAGGGCTTATGCCCCAATTATTAA
1 AAGGGCTTATGCCCCAGTTATTAA
*
12058792 AAGGGCTTATGCCCCAATTATTAA
1 AAGGGCTTATGCCCCAGTTATTAA
*
12058816 AAGGGCTTTTGCCCCAGTTATTAA
1 AAGGGCTTATGCCCCAGTTATTAA
*
12058840 AAGGGCTTTTGCCCCAGTTATTAA
1 AAGGGCTTATGCCCCAGTTATTAA
* *
12058864 AAAGGCTTTTGCCCCAGTTATTAA
1 AAGGGCTTATGCCCCAGTTATTAA
*
12058888 AAGAGGC-TAGGCCTCCAGTTAT
1 AAG-GGCTTATGCC-CCAGTTAT
12058910 ATGATAAAGT
Statistics
Matches: 157, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
24 100 0.64
25 57 0.36
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (24 bp):
AAGGGCTTATGCCCCAGTTATTAA
Found at i:12062387 original size:143 final size:146
Alignment explanation
Indices: 12062166--12062456 Score: 498
Period size: 143 Copynumber: 2.0 Consensus size: 146
12062156 TAAGATGAAA
12062166 CATCAATCAAAAGGTCCTTAGAGAGTTGTAACGTGGCTTTGGTTAGAGGGTGTGGTCACAAACTG
1 CATCAATCAAAAGGTCCTTAGAGAGTTGTAACGTGGCTTTGGTTAGAGGGTGTGGTCACAAACTG
*
12062231 AAAGAAAGGGTTAG-A-A-ATTGAATTGAAAAATTGCGTAACTAGAAAAATGACTAGTCATCAAT
66 AAAGAAAGGGTTAGAACAGATTGAATTGAAAAATTGCCTAACTAGAAAAATGACTAGTCATCAAT
* *
12062293 TGTGTACAATAGAGCT
131 TGCGTACAACAGAGCT
* *
12062309 CATCAATCAAAAGGTCTTTAGAGGGTTGTAACGTGGCTTTGGTTAGAGGGTGTGGTCACAAACTG
1 CATCAATCAAAAGGTCCTTAGAGAGTTGTAACGTGGCTTTGGTTAGAGGGTGTGGTCACAAACTG
12062374 AAAGAAAGGGTTAGAATCGAGATTGAATTGAAAAATTGCCTAACTAGAAAAATGACTAGTCATCA
66 AAAGAAAGGGTTAGAA-C-AGATTGAATTGAAAAATTGCCTAACTAGAAAAATGACTAGTCATCA
12062439 ATTGCGTACAACAGAGCT
129 ATTGCGTACAACAGAGCT
12062457 TTTTCTCAGA
Statistics
Matches: 138, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
143 77 0.56
144 1 0.01
147 1 0.01
148 59 0.43
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.26
Consensus pattern (146 bp):
CATCAATCAAAAGGTCCTTAGAGAGTTGTAACGTGGCTTTGGTTAGAGGGTGTGGTCACAAACTG
AAAGAAAGGGTTAGAACAGATTGAATTGAAAAATTGCCTAACTAGAAAAATGACTAGTCATCAAT
TGCGTACAACAGAGCT
Found at i:12068057 original size:28 final size:28
Alignment explanation
Indices: 12068019--12068125 Score: 151
Period size: 28 Copynumber: 3.8 Consensus size: 28
12068009 GAATCATTCG
* *
12068019 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
12068047 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
12068075 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* * *
12068103 ATATTTCGTACACTGAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
12068126 ATTTGATTGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 72 1.00
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:12078391 original size:43 final size:42
Alignment explanation
Indices: 12078344--12078453 Score: 143
Period size: 43 Copynumber: 2.5 Consensus size: 42
12078334 TCCTAGACGT
12078344 GGTCTTACATGTAATCACATATCGATGCC-ACTGTCCCAGGA-AG
1 GGTCTTACATG-AATCACATATCGATGCCGA-TGTCCCA-GACAG
* *
12078387 GGTCTTACACGAATCACATATACGATGCCGATGTCCCAGACAT
1 GGTCTTACATGAATCACATAT-CGATGCCGATGTCCCAGACAG
12078430 GGTCTTACATGCAATCACATATCG
1 GGTCTTACATG-AATCACATATCG
12078454 TAAATCCTAT
Statistics
Matches: 60, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
42 12 0.20
43 37 0.62
44 11 0.18
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.25
Consensus pattern (42 bp):
GGTCTTACATGAATCACATATCGATGCCGATGTCCCAGACAG
Found at i:12078778 original size:15 final size:16
Alignment explanation
Indices: 12078754--12078786 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
12078744 TTCTTGATCT
12078754 AAATATATTCAAAATA
1 AAATATATTCAAAATA
*
12078770 AAATA-ATTCAAGATA
1 AAATATATTCAAAATA
12078785 AA
1 AA
12078787 TTCATTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.64, C:0.06, G:0.03, T:0.27
Consensus pattern (16 bp):
AAATATATTCAAAATA
Found at i:12080973 original size:13 final size:13
Alignment explanation
Indices: 12080955--12080979 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12080945 CCAAGCACAC
12080955 GCCCGTGTCCCTG
1 GCCCGTGTCCCTG
12080968 GCCCGTGTCCCT
1 GCCCGTGTCCCT
12080980 CACATGACCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.48, G:0.28, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTG
Found at i:12082983 original size:29 final size:29
Alignment explanation
Indices: 12082915--12083040 Score: 155
Period size: 29 Copynumber: 4.3 Consensus size: 29
12082905 AAGTCTACAT
* *
12082915 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
12082943 TCATTCAAATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
12082972 ATATTCGTATGGCACATTAGGCCCAAAATC
1 ACATTCATATGGCCCATTAGGCCC-AAATC
* *
12083002 ACATTCATACGACCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
12083031 ACATTCATAT
1 ACATTCATAT
12083041 ACATGTTTTC
Statistics
Matches: 81, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
28 20 0.25
29 37 0.46
30 24 0.30
ACGTcount: A:0.33, C:0.30, G:0.13, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:12088548 original size:7 final size:7
Alignment explanation
Indices: 12088536--12088568 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
12088526 GGAATGAATA
12088536 AGAAATG
1 AGAAATG
12088543 AGAAATG
1 AGAAATG
12088550 AGAAATG
1 AGAAATG
*
12088557 AGAAATA
1 AGAAATG
12088564 AGAAA
1 AGAAA
12088569 CATTCAGGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.12
Consensus pattern (7 bp):
AGAAATG
Found at i:12088555 original size:14 final size:14
Alignment explanation
Indices: 12088532--12088568 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
12088522 GAATGGAATG
12088532 AATAAGAAATGAGA
1 AATAAGAAATGAGA
*
12088546 AATGAGAAATGAGA
1 AATAAGAAATGAGA
12088560 AATAAGAAA
1 AATAAGAAA
12088569 CATTCAGGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.65, C:0.00, G:0.22, T:0.14
Consensus pattern (14 bp):
AATAAGAAATGAGA
Found at i:12095486 original size:13 final size:13
Alignment explanation
Indices: 12095468--12095493 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
12095458 TCGACAGGGA
12095468 CACGCCCGTGTGG
1 CACGCCCGTGTGG
12095481 CACGCCCGTGTGG
1 CACGCCCGTGTGG
12095494 GGTGGCTTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.38, G:0.38, T:0.15
Consensus pattern (13 bp):
CACGCCCGTGTGG
Found at i:12099282 original size:18 final size:19
Alignment explanation
Indices: 12099249--12099287 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
12099239 GTATGTGCGC
*
12099249 AAGGGTGAGAAGAGGGGAG
1 AAGGGAGAGAAGAGGGGAG
12099268 AAGGGAGAG-AGAGGGGAG
1 AAGGGAGAGAAGAGGGGAG
12099286 AA
1 AA
12099288 AAATGGGAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.41, C:0.00, G:0.56, T:0.03
Consensus pattern (19 bp):
AAGGGAGAGAAGAGGGGAG
Found at i:12106596 original size:48 final size:48
Alignment explanation
Indices: 12106431--12106607 Score: 155
Period size: 48 Copynumber: 3.7 Consensus size: 48
12106421 GTCTCAATGT
* * * *
12106431 CGATGCCATGTTCTAAACATGGTCTTACACTGGCTCTCATATTATGAC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATAATATGGC
* * * * *
12106479 CAAAGCCAT-TTCCCAGACTTGGTCTTACACTAG-TGCACAT-ATCA-GCGC
1 CGATGCCATGTT-CCAAACATGGTCTTACACTAGCT-CTCATAAT-ATG-GC
* * *** *
12106527 CGATGGCATGTCCCCGGCATGGTCTTTCACTAGCTCTCATAATATGGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATAATATGGC
12106575 CGATGCCATGTTCCAAACATGGTCTTACACTAG
1 CGATGCCATGTTCCAAACATGGTCTTACACTAG
12106608 ACACATATCA
Statistics
Matches: 97, Mismatches: 24, Indels: 16
0.71 0.18 0.12
Matches are distributed among these distances:
47 5 0.05
48 87 0.90
49 5 0.05
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATAATATGGC
Found at i:12109877 original size:46 final size:45
Alignment explanation
Indices: 12109805--12109923 Score: 161
Period size: 46 Copynumber: 2.6 Consensus size: 45
12109795 GTTATTTATG
*
12109805 AGCCCGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGT
1 AGCCAGTGTAAGACATGTCTGGGACATGCAT-GGCCTACGAGATGT
* *
12109850 AAGCCAGTGTAAGACATGTCTGGGACATGTATGGGCTACGAGATGT
1 -AGCCAGTGTAAGACATGTCTGGGACATGCATGGCCTACGAGATGT
*
12109896 -GTCAGTGTAAGACCATGTCTGGGACATG
1 AGCCAGTGTAAGA-CATGTCTGGGACATG
12109924 GTGTTGGCCC
Statistics
Matches: 67, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
44 11 0.16
45 19 0.28
46 37 0.55
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (45 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATGGCCTACGAGATGT
Found at i:12110985 original size:29 final size:28
Alignment explanation
Indices: 12110930--12110985 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
12110920 AGACGGGCTA
12110930 GGACACGGGCGTGTCATGGCCGTGTGAG
1 GGACACGGGCGTGTCATGGCCGTGTGAG
12110958 GGACACGGGCATGTGTCA-GGCCGTGTGA
1 GGACACGGGC--GTGTCATGGCCGTGTGA
12110986 AAACCCCTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 10 0.38
29 10 0.38
30 6 0.23
ACGTcount: A:0.16, C:0.21, G:0.45, T:0.18
Consensus pattern (28 bp):
GGACACGGGCGTGTCATGGCCGTGTGAG
Found at i:12113376 original size:3 final size:3
Alignment explanation
Indices: 12113368--12113394 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
12113358 CACTCATCTC
12113368 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
12113395 TACCTCATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:12125668 original size:93 final size:93
Alignment explanation
Indices: 12125556--12125727 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
12125546 GCCCATAAGT
* *
12125556 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
12125621 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
12125649 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
12125714 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
12125728 CAAATATCCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:12125723 original size:46 final size:46
Alignment explanation
Indices: 12125548--12125723 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
12125538 TGTAACCCGC
* *
12125548 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
12125594 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
12125640 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
12125687 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
12125724 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:12130363 original size:20 final size:18
Alignment explanation
Indices: 12130318--12130355 Score: 58
Period size: 20 Copynumber: 2.0 Consensus size: 18
12130308 GAGCGAAAGG
12130318 AACGAGAAAAGGGCCAAA
1 AACGAGAAAAGGGCCAAA
12130336 AACAGAGAAAATGGGCCAAA
1 AAC-GAGAAAA-GGGCCAAA
12130356 GTACGAGATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 3 0.17
19 7 0.39
20 8 0.44
ACGTcount: A:0.55, C:0.16, G:0.26, T:0.03
Consensus pattern (18 bp):
AACGAGAAAAGGGCCAAA
Found at i:12132657 original size:215 final size:215
Alignment explanation
Indices: 12132286--12132716 Score: 862
Period size: 215 Copynumber: 2.0 Consensus size: 215
12132276 GGGTTACCGG
12132286 TTTGGCTCCAAGTACAAACATTTCACAATGGTCTGAATCCTTCGACTCGGAAAATGGTTGACACA
1 TTTGGCTCCAAGTACAAACATTTCACAATGGTCTGAATCCTTCGACTCGGAAAATGGTTGACACA
12132351 GCTGCTAGCAAAACCATCGACAATAAAACACCGGAAGATGCCTATGAGTTTATAGAAGAGATGTC
66 GCTGCTAGCAAAACCATCGACAATAAAACACCGGAAGATGCCTATGAGTTTATAGAAGAGATGTC
12132416 ACTGAATAACTATCAGTGGCAAGTCATGAGGACAAAGCCAACGAAAACAACCGGCATTTATAACG
131 ACTGAATAACTATCAGTGGCAAGTCATGAGGACAAAGCCAACGAAAACAACCGGCATTTATAACG
12132481 TCGATTCCGTCACCATGCTT
196 TCGATTCCGTCACCATGCTT
12132501 TTTGGCTCCAAGTACAAACATTTCACAATGGTCTGAATCCTTCGACTCGGAAAATGGTTGACACA
1 TTTGGCTCCAAGTACAAACATTTCACAATGGTCTGAATCCTTCGACTCGGAAAATGGTTGACACA
12132566 GCTGCTAGCAAAACCATCGACAATAAAACACCGGAAGATGCCTATGAGTTTATAGAAGAGATGTC
66 GCTGCTAGCAAAACCATCGACAATAAAACACCGGAAGATGCCTATGAGTTTATAGAAGAGATGTC
12132631 ACTGAATAACTATCAGTGGCAAGTCATGAGGACAAAGCCAACGAAAACAACCGGCATTTATAACG
131 ACTGAATAACTATCAGTGGCAAGTCATGAGGACAAAGCCAACGAAAACAACCGGCATTTATAACG
12132696 TCGATTCCGTCACCATGCTT
196 TCGATTCCGTCACCATGCTT
12132716 T
1 T
12132717 CTAATCAGGT
Statistics
Matches: 216, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
215 216 1.00
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (215 bp):
TTTGGCTCCAAGTACAAACATTTCACAATGGTCTGAATCCTTCGACTCGGAAAATGGTTGACACA
GCTGCTAGCAAAACCATCGACAATAAAACACCGGAAGATGCCTATGAGTTTATAGAAGAGATGTC
ACTGAATAACTATCAGTGGCAAGTCATGAGGACAAAGCCAACGAAAACAACCGGCATTTATAACG
TCGATTCCGTCACCATGCTT
Found at i:12135138 original size:40 final size:40
Alignment explanation
Indices: 12135094--12135207 Score: 178
Period size: 40 Copynumber: 2.9 Consensus size: 40
12135084 GCTCCTCGTT
* *
12135094 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
12135134 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
12135174 CAAATGCCTTCGGG-CTTAGCCCGGATTTAGTAAC
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAAC
12135208 CCTGTAGTTT
Statistics
Matches: 69, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
39 19 0.28
40 48 0.70
41 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:12151112 original size:48 final size:47
Alignment explanation
Indices: 12151041--12151316 Score: 203
Period size: 48 Copynumber: 5.8 Consensus size: 47
12151031 AGAGCAAATT
* * * * * *
12151041 GCCGACGCTATGTCCCAGGCATGGTCTTACACTGGCTTACATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTT-CATATCAAG
* * * * *
12151089 GCCGATGCCATGTCCCAGACATGGTCTCACATTAGCTCTCGTCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-TCATATCAAG
* * * * * ***
12151137 ACCGATGCCATGTTCCAAACATGGTCTTACACCAGTTCTCATATTGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-TCATATCAAG
* * ** *
12151185 GCCGACGCCATGTCCTAGACATGGTCTTACACTAGCGCACATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC-TTCATATCAAG
* * * * *
12151233 ACTGGTGCCATGTCCCAGACATGGTCTTTCACTAGCTCTCATAAT-ATG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-TCAT-ATCAAG
* * *
12151281 GCAGATGCCATGTTCCAAACATGGTCTTACACTAGC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
12151317 ACACATATCA
Statistics
Matches: 172, Mismatches: 52, Indels: 8
0.74 0.22 0.03
Matches are distributed among these distances:
48 169 0.98
49 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTCATATCAAG
Found at i:12151242 original size:96 final size:95
Alignment explanation
Indices: 12151088--12151326 Score: 271
Period size: 96 Copynumber: 2.5 Consensus size: 95
12151078 TACATGTCGA
* * * * * * * *
12151088 GGCCGATGCCATGTCCCAGACATGGTCTCACATTAGCTCTCGTCTCAATACCGATGCCATGTTCC
1 GGCCGATGCCATGT-CCAGACATGGTCTTACACTAGCACACATATCAACACCGATGCCATGTCCC
* * *
12151153 AAACATGGTCTTACACCAGTTCTCATATTGT
65 AAACATGGTCTTACACCAGCTCTCATAATAT
* * * *
12151184 GGCCGACGCCATGTCCTAGACATGGTCTTACACTAGCGCACATATCAACACTGGTGCCATGTCCC
1 GGCCGATGCCATGTCC-AGACATGGTCTTACACTAGCACACATATCAACACCGATGCCATGTCCC
* * *
12151249 AGACATGGTCTTTCACTAGCTCTCATAATAT
65 AAACATGGTCTTACACCAGCTCTCATAATAT
* *
12151280 GGCAGATGCCATGTTCCAAACATGGTCTTACACTAGCACACATATCA
1 GGCCGATGCCATG-TCCAGACATGGTCTTACACTAGCACACATATCA
12151327 CTCAAATGTC
Statistics
Matches: 120, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
95 2 0.02
96 115 0.96
97 3 0.03
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (95 bp):
GGCCGATGCCATGTCCAGACATGGTCTTACACTAGCACACATATCAACACCGATGCCATGTCCCA
AACATGGTCTTACACCAGCTCTCATAATAT
Found at i:12152383 original size:185 final size:184
Alignment explanation
Indices: 12152072--12152430 Score: 664
Period size: 185 Copynumber: 1.9 Consensus size: 184
12152062 AGAGGATAGC
12152072 TTGGCTGAAGTTTTAAGCTCCAAAAACCCTTATTTTTCTGAGAATTTCGGTGGAGAAGAATAACA
1 TTGGCTGAAGTTTTAAGCTCCAAAAACCCTTATTTTTCTGAGAATTTCGGTGGAGAAGAATAACA
12152137 CTATAGCCTTCCTTTTCTTTATTTTATTTTAGTCAAATAAGTCACCAAAAACTCACCTAACCTTG
66 CTATAGCCTTCCTTTTCTTTATTTTATTTTAGTCAAATAAGTCACCAAAAACTCACCTAACCTTG
12152202 ACATTTTGATTTTCTGTGTCCCTATGGCCGGCCATCTCATTAATAAAAGGCTAT
131 ACATTTTGATTTTCTGTGTCCCTATGGCCGGCCATCTCATTAATAAAAGGCTAT
* * *
12152256 TTGGCTGAATTTTTAAGCTCTAGAAACCCTTATTTTTTCTGAGAATTTCGGTGGAGAAGAATAAC
1 TTGGCTGAAGTTTTAAGCTCCAAAAACCCTTA-TTTTTCTGAGAATTTCGGTGGAGAAGAATAAC
*
12152321 ATTATAGCCTTCCTTTTCTTTATTTTATTTTAGTCAAATAAGTCACCAAAAACTCACCTAACCTT
65 ACTATAGCCTTCCTTTTCTTTATTTTATTTTAGTCAAATAAGTCACCAAAAACTCACCTAACCTT
*
12152386 GACATTTTGATTTTCTGTTTCCCTATGGCCGGCCATCTCATTAAT
130 GACATTTTGATTTTCTGTGTCCCTATGGCCGGCCATCTCATTAAT
12152431 TGTGACAGCC
Statistics
Matches: 169, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
184 29 0.17
185 140 0.83
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (184 bp):
TTGGCTGAAGTTTTAAGCTCCAAAAACCCTTATTTTTCTGAGAATTTCGGTGGAGAAGAATAACA
CTATAGCCTTCCTTTTCTTTATTTTATTTTAGTCAAATAAGTCACCAAAAACTCACCTAACCTTG
ACATTTTGATTTTCTGTGTCCCTATGGCCGGCCATCTCATTAATAAAAGGCTAT
Found at i:12160436 original size:29 final size:29
Alignment explanation
Indices: 12160403--12160476 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
12160393 GTTGTGAGAT
* *
12160403 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
12160432 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
12160461 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
12160477 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:12163674 original size:44 final size:44
Alignment explanation
Indices: 12163609--12163692 Score: 98
Period size: 44 Copynumber: 1.9 Consensus size: 44
12163599 TTGATATCTC
* * *
12163609 AAAGTCCATGGTTGTACCATGGGAATTAAAGAAGAATTGATGGA
1 AAAGTCCATGGTTATAACATGGCAATTAAAGAAGAATTGATGGA
* * *
12163653 AAAGTCCAT-GTTCATAACATGGCATTTAATGAGGAATTGA
1 AAAGTCCATGGTT-ATAACATGGCAATTAAAGAAGAATTGA
12163693 CGGTTAAGGA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
43 3 0.09
44 30 0.91
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.27
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGCAATTAAAGAAGAATTGATGGA
Found at i:12163949 original size:54 final size:54
Alignment explanation
Indices: 12163879--12164068 Score: 240
Period size: 54 Copynumber: 3.5 Consensus size: 54
12163869 TGGCATTTGG
* * * *
12163879 TAAGATAAGGATATCATGTAAGACCATGCCAAGGCATGTCATTGATAAGTTCTA
1 TAAGGTAAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTA
* * * *
12163933 TAAGGTAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTA
1 TAAGGTAAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTA
* *
12163988 TAAGGTAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTT-TA
1 TAAGGT-AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTA
* *
12164041 TAAGGCAAGGATACCACGTAAGACCATG
1 TAAGGTAAGGATACCATGTAAGACCATG
12164069 TAAAGACATG
Statistics
Matches: 118, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
52 4 0.03
53 22 0.19
54 45 0.38
55 43 0.36
56 4 0.03
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (54 bp):
TAAGGTAAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTA
Found at i:12175808 original size:34 final size:33
Alignment explanation
Indices: 12175760--12175851 Score: 87
Period size: 34 Copynumber: 2.8 Consensus size: 33
12175750 GTTTCAGTTA
* * *
12175760 GGGCCTTAGCCCATTTCAGAATCAGAAACAGTG
1 GGGCCTAAGTCCATTACAGAATCAGAAACAGTG
* * * *
12175793 TGGGCCTGAGTCCATTCCAGTAA-CAGTATCAGTG
1 -GGGCCTAAGTCCATTACAG-AATCAGAAACAGTG
*
12175827 GAGCCTAAGTCCATTACAGAATCAG
1 GGGCCTAAGTCCATTACAGAATCAG
12175852 TGCAGTATGC
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
32 2 0.04
33 19 0.40
34 25 0.52
35 2 0.04
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (33 bp):
GGGCCTAAGTCCATTACAGAATCAGAAACAGTG
Found at i:12176284 original size:27 final size:27
Alignment explanation
Indices: 12176254--12176353 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
12176244 GGCAAATAAT
12176254 TCATTTTACCTTACAAGGGTATTATGG
1 TCATTTTACCTTACAAGGGTATTATGG
* **
12176281 TCATTTTACCTTACAGGGGTATTACAG
1 TCATTTTACCTTACAAGGGTATTATGG
* * *
12176308 TCATTTTAACTTATAGGGGTATT-TCGG
1 TCATTTTACCTTACAAGGGTATTAT-GG
*
12176335 TCATTTTACCTTATAAGGG
1 TCATTTTACCTTACAAGGG
12176354 CAAAATCATC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 63 1.00
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.41
Consensus pattern (27 bp):
TCATTTTACCTTACAAGGGTATTATGG
Found at i:12176366 original size:54 final size:55
Alignment explanation
Indices: 12176241--12176369 Score: 131
Period size: 54 Copynumber: 2.4 Consensus size: 55
12176231 ATACACATCG
* * *
12176241 AAGGGC-AAATAATTCATTTTACCTTACAAGGGTATTATGGTCATTTTACCTTAC
1 AAGGGCAAAATCAGTCATTTTAACTTACAAGGGTATTATGGTCATTTTACCTTAC
* * ** * * *
12176295 AGGGGTATTA-CAGTCATTTTAACTTATAGGGGTATT-TCGGTCATTTTACCTTAT
1 AAGGGCAAAATCAGTCATTTTAACTTACAAGGGTATTAT-GGTCATTTTACCTTAC
12176349 AAGGGCAAAATCA-TCATTTTA
1 AAGGGCAAAATCAGTCATTTTA
12176370 TCACATAAGG
Statistics
Matches: 58, Mismatches: 14, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
53 1 0.02
54 54 0.93
55 3 0.05
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (55 bp):
AAGGGCAAAATCAGTCATTTTAACTTACAAGGGTATTATGGTCATTTTACCTTAC
Found at i:12176403 original size:27 final size:27
Alignment explanation
Indices: 12176347--12176407 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
12176337 ATTTTACCTT
* *
12176347 ATAAGGGCAAAATCATCATTTTATCAC
1 ATAAGGGAAAAATCATCATTTCATCAC
* *
12176374 ATAAGGGAAAAAT-AGTCATTTCGTCTC
1 ATAAGGGAAAAATCA-TCATTTCATCAC
12176401 ATAAGGG
1 ATAAGGG
12176408 TTCAGGTACA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.03
27 28 0.97
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (27 bp):
ATAAGGGAAAAATCATCATTTCATCAC
Found at i:12181920 original size:96 final size:96
Alignment explanation
Indices: 12181461--12181917 Score: 657
Period size: 96 Copynumber: 4.8 Consensus size: 96
12181451 TAGGGTTATG
* * * *
12181461 TGAGCCAGTGTAAGACCATGTTTGGAATAGGGCATTGGCATTTATATGAGAGCTAGTGGAAGACC
1 TGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAAGACC
* * *
12181526 ATGTTTGGAACATGGCATCGGCCTCGATATG
66 ATGTCTGGAACATGGCATCGACCTCGATATA
* * * * *
12181557 TGAGTCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATATTAGAGCTAGCGTAAGAAC
1 TGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAAGACC
* * * *
12181622 TTGGT-TAGAATATGGCATCGACCTCGATATG
66 AT-GTCTGGAACATGGCATCGACCTCGATATA
**
12181653 TGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAACATTTATATGAGAGCTAGTGTAAGACC
1 TGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAAGACC
*
12181718 ATGTTTGGAACATGGCATCGACCTCGATATA
66 ATGTCTGGAACATGGCATCGACCTCGATATA
* * *
12181749 TGAGCCAGTGTAAGATCC-TGTTTGGAACATGGCATTGGTATTTATATGAGAGTTAGTGTAAGAC
1 TGAGCCAGTGTAAGA-CCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAAGAC
* *
12181813 CATGTCTGGGACATGGCATCGCCCTCGATATA
65 CATGTCTGGAACATGGCATCGACCTCGATATA
*
12181845 TGAGCCAGTGTGAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAAGACC
1 TGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAAGACC
12181910 ATGTCTGG
66 ATGTCTGG
12181918 GACTTAGCAT
Statistics
Matches: 323, Mismatches: 34, Indels: 8
0.88 0.09 0.02
Matches are distributed among these distances:
95 4 0.01
96 315 0.98
97 4 0.01
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (96 bp):
TGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAAGACC
ATGTCTGGAACATGGCATCGACCTCGATATA
Found at i:12181928 original size:48 final size:48
Alignment explanation
Indices: 12181457--12181913 Score: 472
Period size: 48 Copynumber: 9.5 Consensus size: 48
12181447 ATACTAGGGT
* * * * *
12181457 TATGTGAGCCAGTGTAAGACCATGTTTGGAATAGGGCATTGGCATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTA
* * **
12181505 TATGAGAGCTAGTGGAAGACCATGTTTGGAACATGGCATCGGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTA
* *
12181553 TATGTGAG-TCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTA
1 TATGAGAGCT-AGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTA
* * * * * * * * * **
12181601 TATTAGAGCTAGCGTAAGAACTTGGTTAGAATATGGCATCGACCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTA
* * **
12181649 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAACATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTA
* * **
12181697 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTA
* * *
12181745 TAT-ATGAGCCAGTGTAAGATCC-TGTTTGGAACATGGCATTGGTATTTA
1 TATGA-GAGCTAGTGTAAGA-CCATGTTTGGAACATGGCATCGGCATTTA
* * * * * **
12181793 TATGAGAGTTAGTGTAAGACCATGTCTGGGACATGGCATCGCCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTA
* *
12181841 TAT-ATGAGCCAGTGTGAGACCATGTTTGGAACATGGCATCGGCATTTA
1 TATGA-GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTA
12181889 TATGAGAGCTAGTGTAAGACCATGT
1 TATGAGAGCTAGTGTAAGACCATGT
12181914 CTGGGACTTA
Statistics
Matches: 328, Mismatches: 73, Indels: 16
0.79 0.18 0.04
Matches are distributed among these distances:
47 5 0.02
48 318 0.97
49 5 0.02
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTA
Found at i:12181937 original size:22 final size:22
Alignment explanation
Indices: 12181909--12181950 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
12181899 AGTGTAAGAC
* *
12181909 CATGTCTGGGACTTAGCATCAG
1 CATGTCTAGGACATAGCATCAG
12181931 CATGTCTAGGACATAGCATC
1 CATGTCTAGGACATAGCATC
12181951 GACATCATAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (22 bp):
CATGTCTAGGACATAGCATCAG
Found at i:12193426 original size:73 final size:67
Alignment explanation
Indices: 12193283--12193426 Score: 164
Period size: 73 Copynumber: 2.1 Consensus size: 67
12193273 GAGGAATCGT
* * * *
12193283 TCTGGCAGCCTCGCTGCAATCTGGTGGCCACACCACATATATTTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTCGCCACACCACATATATTTGTTCTGGTGACCTAGCCACAA
12193348 TA
66 TA
* *
12193350 TCTGGCAGCCTCGCTGCAATCTAGTGGATTCGCCACA-CATATATATATCTGTTCTGGTGGCCTA
1 TCTGGCAGCCTCGCTGCAATC---TGG--TCGCCACACCACATATAT-T-TGTTCTGGTGACCTA
12193414 GCCACAATA
59 GCCACAATA
12193423 TCTG
1 TCTG
12193427 TATCTAGTGA
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
67 21 0.33
70 3 0.05
71 8 0.12
72 8 0.12
73 24 0.38
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.30
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTCGCCACACCACATATATTTGTTCTGGTGACCTAGCCACAA
TA
Found at i:12198493 original size:47 final size:47
Alignment explanation
Indices: 12198424--12198513 Score: 153
Period size: 47 Copynumber: 1.9 Consensus size: 47
12198414 TGGAAGTGGG
*
12198424 AGAGGGTAACCATAGATTTTGTGAGTGGGTTACCCTTGCCACCATTT
1 AGAGGGTAACCATAGATTTTGTGAGTGGGTTACCCTTGACACCATTT
* *
12198471 AGAGGGTAACCATGGATTTTGTGTGTGGGTTACCCTTGACACC
1 AGAGGGTAACCATAGATTTTGTGAGTGGGTTACCCTTGACACC
12198514 GTCAAAGAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (47 bp):
AGAGGGTAACCATAGATTTTGTGAGTGGGTTACCCTTGACACCATTT
Found at i:12200934 original size:27 final size:26
Alignment explanation
Indices: 12200882--12200941 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
12200872 ATATATATAT
*
12200882 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
12200908 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
12200935 ATATCTG
1 ATATCTG
12200942 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:12215448 original size:12 final size:12
Alignment explanation
Indices: 12215431--12215456 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
12215421 CATTCCGAAG
12215431 TATATATATACA
1 TATATATATACA
12215443 TATATATATACA
1 TATATATATACA
12215455 TA
1 TA
12215457 AGTATGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:12215976 original size:27 final size:27
Alignment explanation
Indices: 12215942--12216119 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
12215932 TTTATTGTAC
12215942 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
12215969 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
12215995 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
12216023 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
12216051 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
12216078 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
12216105 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
12216120 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:12216056 original size:82 final size:81
Alignment explanation
Indices: 12215943--12216098 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
12215933 TTATTGTACA
* *
12215943 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
12216007 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
12216024 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
12216089 TGCGAGTTGA
65 TGCGAATTGA
12216099 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:12216110 original size:82 final size:81
Alignment explanation
Indices: 12215939--12216119 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
12215929 GTTTTTATTG
* *
12215939 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
12216004 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
12216020 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
12216084 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
12216102 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
12216120 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:12224450 original size:27 final size:27
Alignment explanation
Indices: 12224419--12224596 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
12224409 TAAATTGTAC
12224419 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
12224446 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
12224472 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
12224500 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
12224528 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
12224555 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
12224582 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
12224597 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:12224533 original size:82 final size:81
Alignment explanation
Indices: 12224420--12224575 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
12224410 AAATTGTACA
* *
12224420 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
12224484 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
12224501 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
12224566 TGCGAGTTGA
65 TGCGAATTGA
12224576 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:12224587 original size:82 final size:81
Alignment explanation
Indices: 12224416--12224596 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
12224406 GATTAAATTG
* *
12224416 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
12224481 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
12224497 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
12224561 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
12224579 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
12224597 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:12242150 original size:341 final size:341
Alignment explanation
Indices: 12241527--12242208 Score: 1364
Period size: 341 Copynumber: 2.0 Consensus size: 341
12241517 ACAATCCTAC
12241527 CAAGAGTTCATCACATATCGAGCTCATTACTTATGAGTTTTACATACATACCTGTAACAACTCAT
1 CAAGAGTTCATCACATATCGAGCTCATTACTTATGAGTTTTACATACATACCTGTAACAACTCAT
12241592 AACATGACCATATCCTTTCACAACTTTGACATTCTCGTTGAACACTCGGAATATTAACGGATACT
66 AACATGACCATATCCTTTCACAACTTTGACATTCTCGTTGAACACTCGGAATATTAACGGATACT
12241657 CAAAAATCTTGCACACAAGTGCCATATATGTAGCCGAAGCTACATCATATCTCATAATACATATG
131 CAAAAATCTTGCACACAAGTGCCATATATGTAGCCGAAGCTACATCATATCTCATAATACATATG
12241722 GGTTCGTTTTTGAGCTATTCATAGGCTTGCTCACACAAGCTATTAGTGAGGACGTAGCTACACAG
196 GGTTCGTTTTTGAGCTATTCATAGGCTTGCTCACACAAGCTATTAGTGAGGACGTAGCTACACAG
12241787 TGCTGCTCACACAAGCTGTCAGGTATCCGCAACACATGCCAGACTAACCAGCCAATGGTAGGACT
261 TGCTGCTCACACAAGCTGTCAGGTATCCGCAACACATGCCAGACTAACCAGCCAATGGTAGGACT
12241852 GGAACAACGGAAAAAT
326 GGAACAACGGAAAAAT
12241868 CAAGAGTTCATCACATATCGAGCTCATTACTTATGAGTTTTACATACATACCTGTAACAACTCAT
1 CAAGAGTTCATCACATATCGAGCTCATTACTTATGAGTTTTACATACATACCTGTAACAACTCAT
12241933 AACATGACCATATCCTTTCACAACTTTGACATTCTCGTTGAACACTCGGAATATTAACGGATACT
66 AACATGACCATATCCTTTCACAACTTTGACATTCTCGTTGAACACTCGGAATATTAACGGATACT
12241998 CAAAAATCTTGCACACAAGTGCCATATATGTAGCCGAAGCTACATCATATCTCATAATACATATG
131 CAAAAATCTTGCACACAAGTGCCATATATGTAGCCGAAGCTACATCATATCTCATAATACATATG
12242063 GGTTCGTTTTTGAGCTATTCATAGGCTTGCTCACACAAGCTATTAGTGAGGACGTAGCTACACAG
196 GGTTCGTTTTTGAGCTATTCATAGGCTTGCTCACACAAGCTATTAGTGAGGACGTAGCTACACAG
12242128 TGCTGCTCACACAAGCTGTCAGGTATCCGCAACACATGCCAGACTAACCAGCCAATGGTAGGACT
261 TGCTGCTCACACAAGCTGTCAGGTATCCGCAACACATGCCAGACTAACCAGCCAATGGTAGGACT
12242193 GGAACAACGGAAAAAT
326 GGAACAACGGAAAAAT
12242209 TGCAAGTGTA
Statistics
Matches: 341, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
341 341 1.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (341 bp):
CAAGAGTTCATCACATATCGAGCTCATTACTTATGAGTTTTACATACATACCTGTAACAACTCAT
AACATGACCATATCCTTTCACAACTTTGACATTCTCGTTGAACACTCGGAATATTAACGGATACT
CAAAAATCTTGCACACAAGTGCCATATATGTAGCCGAAGCTACATCATATCTCATAATACATATG
GGTTCGTTTTTGAGCTATTCATAGGCTTGCTCACACAAGCTATTAGTGAGGACGTAGCTACACAG
TGCTGCTCACACAAGCTGTCAGGTATCCGCAACACATGCCAGACTAACCAGCCAATGGTAGGACT
GGAACAACGGAAAAAT
Found at i:12253156 original size:27 final size:27
Alignment explanation
Indices: 12253118--12253355 Score: 449
Period size: 27 Copynumber: 8.8 Consensus size: 27
12253108 TCCAAGCAAC
12253118 TCAACTCGCACACTTAGTGCTACATAG
1 TCAACTCGCACACTTAGTGCTACATAG
12253145 TCAACTCGCACACTTAGTGCTACATAG
1 TCAACTCGCACACTTAGTGCTACATAG
12253172 TCAACTCGCACACTTAGTGCTACATAG
1 TCAACTCGCACACTTAGTGCTACATAG
12253199 TCAACTCGCACACTTAGTGCTACATAG
1 TCAACTCGCACACTTAGTGCTACATAG
12253226 TCAACTCGCACACTTAGTGCTACATAG
1 TCAACTCGCACACTTAGTGCTACATAG
12253253 TCAACTCGCACACTTAGTGCTACATAG
1 TCAACTCGCACACTTAGTGCTACATAG
*
12253280 TCAACTCGCACACTTAGTGCTACATAA
1 TCAACTCGCACACTTAGTGCTACATAG
12253307 TCAAGCTCGCACACTTAGTGCTACATAG
1 TCAA-CTCGCACACTTAGTGCTACATAG
*
12253335 TCAATTCGCACACTTAGTGCT
1 TCAACTCGCACACTTAGTGCT
12253356 GCACAATTTA
Statistics
Matches: 207, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
27 181 0.87
28 26 0.13
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
TCAACTCGCACACTTAGTGCTACATAG
Found at i:12262517 original size:14 final size:14
Alignment explanation
Indices: 12262498--12262527 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
12262488 TGATTTTGAT
*
12262498 TATTTTTATTTTTG
1 TATTTTTAATTTTG
12262512 TATTTTTAATTTTG
1 TATTTTTAATTTTG
12262526 TA
1 TA
12262528 CTCCTTAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.07, T:0.73
Consensus pattern (14 bp):
TATTTTTAATTTTG
Found at i:12267982 original size:27 final size:26
Alignment explanation
Indices: 12267947--12268058 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
12267937 AGCATGGCTG
* *
12267947 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
12267973 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
12268001 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
12268028 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
12268055 CCAG
1 CCAG
12268059 GATGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 54 0.71
28 16 0.21
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:12268011 original size:54 final size:54
Alignment explanation
Indices: 12267947--12268058 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
12267937 AGCATGGCTG
*
12267947 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAACCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAACCA
* * * *
12268001 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
12268055 CCAG
1 CCAG
12268059 GATGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
Found at i:12269008 original size:27 final size:27
Alignment explanation
Indices: 12268978--12269042 Score: 130
Period size: 27 Copynumber: 2.4 Consensus size: 27
12268968 TAACAAAAGT
12268978 CGAATTTATACTGGCACTAACCCTAGC
1 CGAATTTATACTGGCACTAACCCTAGC
12269005 CGAATTTATACTGGCACTAACCCTAGC
1 CGAATTTATACTGGCACTAACCCTAGC
12269032 CGAATTTATAC
1 CGAATTTATAC
12269043 CTGTCATTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.28
Consensus pattern (27 bp):
CGAATTTATACTGGCACTAACCCTAGC
Found at i:12276304 original size:17 final size:18
Alignment explanation
Indices: 12276257--12276304 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
12276247 AATTTATTTC
* *
12276257 ATTTGTTTATTTTTCTTT
1 ATTTATTTATTTTTCGTT
* *
12276275 ATTTACTTCTTTTT-GTT
1 ATTTATTTATTTTTCGTT
12276292 ATTTATTTATTTT
1 ATTTATTTATTTT
12276305 AATCTCTTCA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
17 13 0.54
18 11 0.46
ACGTcount: A:0.15, C:0.06, G:0.04, T:0.75
Consensus pattern (18 bp):
ATTTATTTATTTTTCGTT
Found at i:12279409 original size:21 final size:22
Alignment explanation
Indices: 12279385--12279427 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
12279375 ATTTACCTTG
12279385 CATTGGTATGATATTT-TGTTT
1 CATTGGTATGATATTTATGTTT
** *
12279406 CATTTTTATGATTTTTATGTTT
1 CATTGGTATGATATTTATGTTT
12279428 TGGAGTCGTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.19, C:0.05, G:0.14, T:0.63
Consensus pattern (22 bp):
CATTGGTATGATATTTATGTTT
Found at i:12282618 original size:5 final size:5
Alignment explanation
Indices: 12282608--12282632 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
12282598 TTTTTCTTCC
12282608 AATTT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATTT
12282633 TACTATGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:12287695 original size:5 final size:5
Alignment explanation
Indices: 12287685--12287742 Score: 66
Period size: 5 Copynumber: 11.2 Consensus size: 5
12287675 TTAATCCTCC
12287685 TATTT TATTT T-TATT TATTCT TATTTT TATTT TATTT TA-TT TATTT
1 TATTT TATTT TAT-TT TATT-T TA-TTT TATTT TATTT TATTT TATTT
12287731 TATTCT TATTT T
1 TATT-T TATTT T
12287743 TCTTTTTCTT
Statistics
Matches: 47, Mismatches: 0, Indels: 12
0.80 0.00 0.20
Matches are distributed among these distances:
4 5 0.11
5 28 0.60
6 12 0.26
7 2 0.04
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (5 bp):
TATTT
Found at i:12287698 original size:6 final size:6
Alignment explanation
Indices: 12287687--12287761 Score: 57
Period size: 6 Copynumber: 12.7 Consensus size: 6
12287677 AATCCTCCTA
* *
12287687 TTTTAT TTTTA- -TTTAT TCTTAT TTTTA- TTTTAT TTTATTT ATTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT-TAT -TTTTAT
* * * *
12287734 TCTTAT TTTTCT TTTTCT TTTGAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
12287762 CAATTTTCTT
Statistics
Matches: 54, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
4 4 0.07
5 5 0.09
6 38 0.70
7 4 0.07
8 3 0.06
ACGTcount: A:0.15, C:0.05, G:0.01, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:12287736 original size:31 final size:32
Alignment explanation
Indices: 12287685--12287748 Score: 103
Period size: 31 Copynumber: 2.0 Consensus size: 32
12287675 TTAATCCTCC
*
12287685 TATTTTATTTTTATTTATTCTTATTTTTATTT
1 TATTTTATTTATATTTATTCTTATTTTTATTT
*
12287717 TATTTTATTTAT-TTTATTCTTATTTTTCTTT
1 TATTTTATTTATATTTATTCTTATTTTTATTT
12287748 T
1 T
12287749 TCTTTTGATT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 19 0.63
32 11 0.37
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (32 bp):
TATTTTATTTATATTTATTCTTATTTTTATTT
Found at i:12293699 original size:13 final size:13
Alignment explanation
Indices: 12293683--12293715 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
12293673 TTTGATTAAA
*
12293683 TTAGTTAATTAGT
1 TTAGATAATTAGT
12293696 TTAGATAATTAGT
1 TTAGATAATTAGT
12293709 TTA-ATAA
1 TTAGATAA
12293716 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:12303640 original size:29 final size:28
Alignment explanation
Indices: 12303608--12303749 Score: 93
Period size: 28 Copynumber: 5.0 Consensus size: 28
12303598 TGATTCAAGA
*
12303608 ATATATATATAGTCCGCACACTCAGTGCT
1 ATATATATATA-TCCGCACACTTAGTGCT
*
12303637 ATATATA-ATCAACTCGCACACTTAGTGCT
1 ATATATATAT-ATC-CGCACACTTAGTGCT
*
12303666 ACATA-ATCATA-CTCGCACACTTAGTGCT
1 ATATATAT-ATATC-CGCACACTTAGTGCT
* *
12303694 ACATAGT-CA-A-CTCGCACACTTAGTGCT
1 ATATA-TATATATC-CGCACACTTAGTGCT
*
12303721 ACATA-ATCATA-CTCGCACACTTAGTGCT
1 ATATATAT-ATATC-CGCACACTTAGTGCT
12303749 A
1 A
12303750 CATAGTCAAC
Statistics
Matches: 99, Mismatches: 5, Indels: 19
0.80 0.04 0.15
Matches are distributed among these distances:
27 24 0.24
28 46 0.46
29 27 0.27
30 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.29
Consensus pattern (28 bp):
ATATATATATATCCGCACACTTAGTGCT
Found at i:12303714 original size:27 final size:27
Alignment explanation
Indices: 12303622--12303829 Score: 326
Period size: 27 Copynumber: 7.6 Consensus size: 27
12303612 ATATATAGTC
* * *
12303622 CGCACACTCAGTGCTATATATAATCAACT
1 CGCACACTTAGTGC--TACATAGTCAACT
*
12303651 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCA-ACT
12303679 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
12303706 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCA-ACT
12303734 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
12303761 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
12303788 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
12303815 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
12303830 GCACAATTTA
Statistics
Matches: 171, Mismatches: 6, Indels: 6
0.93 0.03 0.03
Matches are distributed among these distances:
27 106 0.62
28 52 0.30
29 13 0.08
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:12303714 original size:55 final size:55
Alignment explanation
Indices: 12303622--12303829 Score: 346
Period size: 55 Copynumber: 3.8 Consensus size: 55
12303612 ATATATAGTC
* * *
12303622 CGCACACTCAGTGCTATATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGC--TACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
12303679 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
*
12303734 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCA-ACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
*
12303788 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
12303830 GCACAATTTA
Statistics
Matches: 146, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
54 44 0.30
55 89 0.61
57 13 0.09
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
Found at i:12303773 original size:82 final size:82
Alignment explanation
Indices: 12303622--12303829 Score: 337
Period size: 82 Copynumber: 2.5 Consensus size: 82
12303612 ATATATAGTC
* *
12303622 CGCACACTCAGTGCTATATATAATCAACTCGCACACTTAGTGCTACATAATCATACTCGCACACT
1 CGCACACTTAGTGC--TACATAATCAACTCGCACACTTAGTGCTACATAATCATACTCGCACACT
12303687 TAGTGCTACATAGTCAACT
64 TAGTGCTACATAGTCAACT
*
12303706 CGCACACTTAGTGCTACATAATCATACTCGCACACTTAGTGCTACATAGTCA-ACTCGCACACTT
1 CGCACACTTAGTGCTACATAATCA-ACTCGCACACTTAGTGCTACATAATCATACTCGCACACTT
12303770 AGTGCTACATAGTCAACT
65 AGTGCTACATAGTCAACT
* *
12303788 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCT
12303830 GCACAATTTA
Statistics
Matches: 118, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
81 17 0.14
82 62 0.53
83 26 0.22
84 13 0.11
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.27
Consensus pattern (82 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCATACTCGCACACTTA
GTGCTACATAGTCAACT
Found at i:12309432 original size:20 final size:20
Alignment explanation
Indices: 12309380--12309433 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 20
12309370 GTGTACATAG
* *
12309380 ATTTTTAATTTATATATTTT
1 ATTTTTATTTTTTATATTTT
* * * *
12309400 GTTTGTCTGTTTTATATTTT
1 ATTTTTATTTTTTATATTTT
12309420 ATTTTTATTTTTTA
1 ATTTTTATTTTTTA
12309434 AAATCTATAA
Statistics
Matches: 24, Mismatches: 10, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.20, C:0.02, G:0.06, T:0.72
Consensus pattern (20 bp):
ATTTTTATTTTTTATATTTT
Found at i:12310327 original size:17 final size:17
Alignment explanation
Indices: 12310279--12310340 Score: 83
Period size: 17 Copynumber: 3.8 Consensus size: 17
12310269 TAATCACTTT
*
12310279 AATATTAAATTAAGAT-
1 AATATTATATTAAGATA
*
12310295 AATATT-TATAAAGATA
1 AATATTATATTAAGATA
*
12310311 AATATTAGATTAAGATA
1 AATATTATATTAAGATA
12310328 AATATTATATTAA
1 AATATTATATTAA
12310341 ATTTAATATT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
15 7 0.18
16 12 0.31
17 20 0.51
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (17 bp):
AATATTATATTAAGATA
Found at i:12311411 original size:79 final size:79
Alignment explanation
Indices: 12311280--12311438 Score: 309
Period size: 79 Copynumber: 2.0 Consensus size: 79
12311270 CAGACAATCT
*
12311280 AGATAGTTCAATAAAATGACCAGTTCATTTAAACGAACATTACTTTCAATATAGTATAAGATGTC
1 AGATAGTTCAATAAAATGACCAATTCATTTAAACGAACATTACTTTCAATATAGTATAAGATGTC
12311345 AACAAGGTATTTAC
66 AACAAGGTATTTAC
12311359 AGATAGTTCAATAAAATGACCAATTCATTTAAACGAACATTACTTTCAATATAGTATAAGATGTC
1 AGATAGTTCAATAAAATGACCAATTCATTTAAACGAACATTACTTTCAATATAGTATAAGATGTC
12311424 AACAAGGTATTTAC
66 AACAAGGTATTTAC
12311438 A
1 A
12311439 TGTAACACCC
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 79 1.00
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (79 bp):
AGATAGTTCAATAAAATGACCAATTCATTTAAACGAACATTACTTTCAATATAGTATAAGATGTC
AACAAGGTATTTAC
Found at i:12311848 original size:50 final size:50
Alignment explanation
Indices: 12311777--12311910 Score: 259
Period size: 50 Copynumber: 2.7 Consensus size: 50
12311767 ATTTTAGTAA
*
12311777 TTTGGCTAAAAATGGACATGGTTAGGTATGTTCCTAAAGTTTCCTAAATT
1 TTTGGATAAAAATGGACATGGTTAGGTATGTTCCTAAAGTTTCCTAAATT
12311827 TTTGGATAAAAATGGACATGGTTAGGTATGTTCCTAAAGTTTCCTAAATT
1 TTTGGATAAAAATGGACATGGTTAGGTATGTTCCTAAAGTTTCCTAAATT
12311877 TTTGGATAAAAATGGACATGGTTAGGTATGTTCC
1 TTTGGATAAAAATGGACATGGTTAGGTATGTTCC
12311911 ATCTTCCTCC
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
50 83 1.00
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.37
Consensus pattern (50 bp):
TTTGGATAAAAATGGACATGGTTAGGTATGTTCCTAAAGTTTCCTAAATT
Done.