Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56482370
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1659275 characters in sequence are not A, C, G, or T
File 44 of 172
Found at i:14106519 original size:29 final size:29
Alignment explanation
Indices: 14106437--14106524 Score: 99
Period size: 29 Copynumber: 3.1 Consensus size: 29
14106427 TCCAATCTCT
*
14106437 TTCATATGGCCCATTAGGCCC-ATTCTA-A
1 TTCATATGGCCCATTAGGCCCAAATC-ACA
* * * *
14106465 TTTATGTAGCCGATTAGGCCCAAATCACA
1 TTCATATGGCCCATTAGGCCCAAATCACA
*
14106494 TTCATCTGGCCCATTAGGCCCAAATCACA
1 TTCATATGGCCCATTAGGCCCAAATCACA
14106523 TT
1 TT
14106525 TACAATCATG
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
28 18 0.37
29 31 0.63
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (29 bp):
TTCATATGGCCCATTAGGCCCAAATCACA
Found at i:14106761 original size:16 final size:16
Alignment explanation
Indices: 14106740--14106774 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
14106730 GTTGCCAAAC
14106740 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
* *
14106756 TTTCAGTTTTTCGGGA
1 TTTCAGCTTTTCGGCA
14106772 TTT
1 TTT
14106775 ACTGATCTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.11, C:0.17, G:0.20, T:0.51
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:14111834 original size:49 final size:49
Alignment explanation
Indices: 14111761--14111948 Score: 250
Period size: 49 Copynumber: 3.8 Consensus size: 49
14111751 TAGCCGAAGC
*
14111761 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * *
14111810 AATCTGGTACACATAGCAGCCTGCACTTAGTACTACACACGTGATCATAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCA-A-T
* * * *
14111861 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* *
14111910 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
14111949 CGTAACCTCA
Statistics
Matches: 118, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 77 0.65
50 2 0.02
51 39 0.33
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:14111883 original size:100 final size:100
Alignment explanation
Indices: 14111766--14111951 Score: 327
Period size: 100 Copynumber: 1.9 Consensus size: 100
14111756 GAAGCTATCT
* *
14111766 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACATAGCAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCAATAATCCGGTACACATAGCAGCC
14111831 TGCACTTAGTACTACACACGTGATCATAGTTTTCG
66 TGCACTTAGTACTACACACGTGATCATAGTTTTCG
* * *
14111866 GGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCAATAATCCGGTACACATAGCAGCC
14111931 TGCACTTAGTACTACACACGT
66 TGCACTTAGTACTACACACGT
14111952 AACCTCACAA
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 81 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCAATAATCCGGTACACATAGCAGCC
TGCACTTAGTACTACACACGTGATCATAGTTTTCG
Found at i:14112289 original size:14 final size:16
Alignment explanation
Indices: 14112257--14112294 Score: 53
Period size: 14 Copynumber: 2.5 Consensus size: 16
14112247 ATTTACATAA
*
14112257 CATATATCACATATTT
1 CATATATCACATATGT
14112273 CATATATCAC-T-TGT
1 CATATATCACATATGT
14112287 CATATATC
1 CATATATC
14112295 TTCATTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 10 0.48
15 1 0.05
16 10 0.48
ACGTcount: A:0.34, C:0.21, G:0.03, T:0.42
Consensus pattern (16 bp):
CATATATCACATATGT
Found at i:14114116 original size:15 final size:15
Alignment explanation
Indices: 14114093--14114152 Score: 75
Period size: 15 Copynumber: 4.0 Consensus size: 15
14114083 AAGAAAACCG
*
14114093 AATAAAGAAATCCAA
1 AATAAAGAAACCCAA
* *
14114108 AATAGAGAAACCCAG
1 AATAAAGAAACCCAA
*
14114123 AATAAAGAAACCCAG
1 AATAAAGAAACCCAA
*
14114138 AGTAAAGAAACCCAA
1 AATAAAGAAACCCAA
14114153 GATACGATAC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 39 1.00
ACGTcount: A:0.60, C:0.18, G:0.13, T:0.08
Consensus pattern (15 bp):
AATAAAGAAACCCAA
Found at i:14114126 original size:30 final size:30
Alignment explanation
Indices: 14114083--14114151 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
14114073 TAAAGATAAC
* *
14114083 AAGAAAACC-GAATAAAGAAATCCAAAATA
1 AAGAAACCCAGAATAAAGAAACCCAAAATA
* * *
14114112 GAGAAACCCAGAATAAAGAAACCCAGAGTA
1 AAGAAACCCAGAATAAAGAAACCCAAAATA
14114142 AAGAAACCCA
1 AAGAAACCCA
14114152 AGATACGATA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 7 0.21
30 26 0.79
ACGTcount: A:0.59, C:0.19, G:0.14, T:0.07
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAACCCAAAATA
Found at i:14117188 original size:49 final size:49
Alignment explanation
Indices: 14117126--14117300 Score: 199
Period size: 49 Copynumber: 3.6 Consensus size: 49
14117116 TCTGGTACGT
* *
14117126 ATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACAC
1 ATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACAC
* * * *** * * * *
14117175 GTAGTAGCTTGCACTTAGTACTACACACGTTTTCACAGTTTTCGGGTACGC
1 ATAGTAGCCTGCACTTAGTACTACACATG-CGAC-CAATTATCCGGTACAC
*
14117226 ATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGCACAC
1 ATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACAC
*
14117275 ATAGTA-CCTTCACTTAGTACTACACA
1 ATAGTAGCCTGCACTTAGTACTACACA
14117301 CATGACCTTA
Statistics
Matches: 101, Mismatches: 23, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
48 19 0.19
49 43 0.43
50 2 0.02
51 37 0.37
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (49 bp):
ATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACAC
Found at i:14117237 original size:100 final size:99
Alignment explanation
Indices: 14117119--14117301 Score: 303
Period size: 100 Copynumber: 1.8 Consensus size: 99
14117109 GAAGCTATCT
* * * * *
14117119 GGTACGTATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCT
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGCACACATAGTACCT
14117184 TGCACTTAGTACTACACACGTTTTCACAGTTTTCG
66 T-CACTTAGTACTACACACGTTTTCACAGTTTTCG
*
14117219 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGCACACATAGTACCT
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGCACACATAGTACCT
14117284 TCACTTAGTACTACACAC
66 TCACTTAGTACTACACAC
14117302 ATGACCTTAC
Statistics
Matches: 77, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
99 17 0.22
100 60 0.78
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.27
Consensus pattern (99 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGCACACATAGTACCT
TCACTTAGTACTACACACGTTTTCACAGTTTTCG
Found at i:14122973 original size:54 final size:54
Alignment explanation
Indices: 14122913--14123104 Score: 174
Period size: 54 Copynumber: 3.4 Consensus size: 54
14122903 TCATACTAAG
14122913 GGATTTAACCTAGACTGGTAATCCCGACATCGCCTTATGAGTTCATAAAATGGA
1 GGATTTAACCTAGACTGGTAATCCCGACATCGCCTTATGAGTTCATAAAATGGA
* * * * * * * ** *
14122967 GGATTTAGCCTGGACTGGTAGTTCAGATCCGAGCTCCTTAAGGGTGTTTGTCATACTAA--G-
1 GGATTTAACCTAGACTGGTAATCCCGA--C-ATCGCCTT-A---TGAGT-TCATA-AAATGGA
14123027 GGATTTAACCTAGACTGGTAATCCCGACATCGCCTTATGAGTTCATAAAATGGA
1 GGATTTAACCTAGACTGGTAATCCCGACATCGCCTTATGAGTTCATAAAATGGA
* *
14123081 GGATTTAGCCTGGACTGGTAATCC
1 GGATTTAACCTAGACTGGTAATCC
14123105 TGCCATAAGA
Statistics
Matches: 104, Mismatches: 22, Indels: 24
0.69 0.15 0.16
Matches are distributed among these distances:
51 2 0.02
52 5 0.05
53 4 0.04
54 44 0.42
56 2 0.02
57 12 0.12
58 2 0.02
60 22 0.21
61 4 0.04
62 5 0.05
63 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (54 bp):
GGATTTAACCTAGACTGGTAATCCCGACATCGCCTTATGAGTTCATAAAATGGA
Found at i:14122998 original size:114 final size:114
Alignment explanation
Indices: 14122855--14123100 Score: 492
Period size: 114 Copynumber: 2.2 Consensus size: 114
14122845 TAGGATCTAA
14122855 ATTTAGCCTGGACTGGTAGTTCAGATCCGAGCTCCTTAAGGGTGTTTGTCATACTAAGGGATTTA
1 ATTTAGCCTGGACTGGTAGTTCAGATCCGAGCTCCTTAAGGGTGTTTGTCATACTAAGGGATTTA
14122920 ACCTAGACTGGTAATCCCGACATCGCCTTATGAGTTCATAAAATGGAGG
66 ACCTAGACTGGTAATCCCGACATCGCCTTATGAGTTCATAAAATGGAGG
14122969 ATTTAGCCTGGACTGGTAGTTCAGATCCGAGCTCCTTAAGGGTGTTTGTCATACTAAGGGATTTA
1 ATTTAGCCTGGACTGGTAGTTCAGATCCGAGCTCCTTAAGGGTGTTTGTCATACTAAGGGATTTA
14123034 ACCTAGACTGGTAATCCCGACATCGCCTTATGAGTTCATAAAATGGAGG
66 ACCTAGACTGGTAATCCCGACATCGCCTTATGAGTTCATAAAATGGAGG
14123083 ATTTAGCCTGGACTGGTA
1 ATTTAGCCTGGACTGGTA
14123101 ATCCTGCCAT
Statistics
Matches: 132, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 132 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (114 bp):
ATTTAGCCTGGACTGGTAGTTCAGATCCGAGCTCCTTAAGGGTGTTTGTCATACTAAGGGATTTA
ACCTAGACTGGTAATCCCGACATCGCCTTATGAGTTCATAAAATGGAGG
Found at i:14126239 original size:14 final size:14
Alignment explanation
Indices: 14126220--14126250 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
14126210 TCCTTTCTAG
*
14126220 TTTAATTTAATTTA
1 TTTAATTTAAATTA
14126234 TTTAATTTAAATTA
1 TTTAATTTAAATTA
14126248 TTT
1 TTT
14126251 TTATTAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTAATTTAAATTA
Found at i:14137735 original size:30 final size:30
Alignment explanation
Indices: 14137701--14137760 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
14137691 CCTTATTCAA
*
14137701 ACCATCTTCAAATCTCTTAGACATTATCGC
1 ACCATCTTCAAATCTCTTACACATTATCGC
*
14137731 ACCATTTTCAAATCTCTTACACATTATCGC
1 ACCATCTTCAAATCTCTTACACATTATCGC
14137761 CTCAGTAGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.30, G:0.05, T:0.35
Consensus pattern (30 bp):
ACCATCTTCAAATCTCTTACACATTATCGC
Found at i:14139966 original size:43 final size:43
Alignment explanation
Indices: 14139918--14140074 Score: 110
Period size: 43 Copynumber: 3.7 Consensus size: 43
14139908 AGCATATACA
* *
14139918 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAACATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACAAGAAATCAAACATCG
* * *
14139961 ATGCC-ACTATCCTAGACAG-GGTCTTACACA-AAATCAGACA-CG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACA-AGAAATCAAACATCG
* * * * *
14140003 ATACTAATGTCCCAGACATGGTCTTACACAGAAAAT-AGAA-GTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACA-AG-AAATCA-AACATCG
* *
14140047 ATGCCAACGTCCTAGATGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
14140075 CGATAACACA
Statistics
Matches: 86, Mismatches: 19, Indels: 17
0.70 0.16 0.14
Matches are distributed among these distances:
42 25 0.29
43 31 0.36
44 30 0.35
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACAAGAAATCAAACATCG
Found at i:14142030 original size:21 final size:21
Alignment explanation
Indices: 14141984--14142024 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
14141974 AATGATGGAC
14141984 ACTCCTATTTTTAGCAAACTA
1 ACTCCTATTTTTAGCAAACTA
14142005 ACTCCTATTTTTAGCAAACT
1 ACTCCTATTTTTAGCAAACT
14142025 TGCTCCGTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (21 bp):
ACTCCTATTTTTAGCAAACTA
Found at i:14147469 original size:21 final size:23
Alignment explanation
Indices: 14147440--14147481 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
14147430 TTTGTTGATA
14147440 ATGTATTGG-TAT-AAATGGTGT
1 ATGTATTGGTTATGAAATGGTGT
*
14147461 ATGTTTTGGTTATGAAATGGT
1 ATGTATTGGTTATGAAATGGT
14147482 TGGAATTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
22 3 0.17
23 7 0.39
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.45
Consensus pattern (23 bp):
ATGTATTGGTTATGAAATGGTGT
Found at i:14149432 original size:32 final size:32
Alignment explanation
Indices: 14149391--14149458 Score: 93
Period size: 32 Copynumber: 2.1 Consensus size: 32
14149381 GTCTCAATTG
*
14149391 GGCCTAGCCCATCA-CAGAATCAATATCAGTTA
1 GGCCTAGCCCAT-ATCAGAACCAATATCAGTTA
* *
14149423 GGCCTAGCCCATATCAGAACCAGTATCAGTTG
1 GGCCTAGCCCATATCAGAACCAATATCAGTTA
14149455 GGCC
1 GGCC
14149459 CAGCACATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
31 1 0.03
32 31 0.97
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (32 bp):
GGCCTAGCCCATATCAGAACCAATATCAGTTA
Found at i:14151519 original size:13 final size:13
Alignment explanation
Indices: 14151497--14151529 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
14151487 AAGGGTTTGT
14151497 TTAT-TAAACTAA
1 TTATCTAAACTAA
14151509 TTATCTAAACTAA
1 TTATCTAAACTAA
*
14151522 TTAACTAA
1 TTATCTAA
14151530 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:14155742 original size:32 final size:32
Alignment explanation
Indices: 14155671--14155746 Score: 98
Period size: 32 Copynumber: 2.4 Consensus size: 32
14155661 GTCCCAATTG
* * * *
14155671 GGCCTAACCCATCTCAGAATCAATATCAGTTG
1 GGCCTAGCCCATATCAGAACCAATATCAGTTA
*
14155703 GGCCTAGCCCATATCAGAACCAGTATCAGTTA
1 GGCCTAGCCCATATCAGAACCAATATCAGTTA
*
14155735 GGTCTAGCCCAT
1 GGCCTAGCCCAT
14155747 TTCAACATCA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (32 bp):
GGCCTAGCCCATATCAGAACCAATATCAGTTA
Found at i:14159166 original size:48 final size:48
Alignment explanation
Indices: 14159095--14159325 Score: 426
Period size: 48 Copynumber: 4.8 Consensus size: 48
14159085 TGTACAAGAT
14159095 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
14159143 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAGTGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
14159191 AAATATGTATGAGGTATGTATATGTGGTAAAGCCGAATGGCTACTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
14159239 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
14159287 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
14159326 ACCAAATGTG
Statistics
Matches: 175, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 175 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:14163199 original size:79 final size:82
Alignment explanation
Indices: 14163088--14163272 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
14163078 GCTACTCGTT
* *
14163088 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
14163151 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
14163168 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
14163231 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
14163248 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
14163273 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:14163272 original size:40 final size:40
Alignment explanation
Indices: 14163069--14163272 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
14163059 CGGAATTTAA
** *
14163069 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
14163109 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
14163149 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
14163188 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
14163228 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
14163268 CCGGA
1 CCGGA
14163273 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:14167095 original size:40 final size:40
Alignment explanation
Indices: 14167036--14167291 Score: 358
Period size: 40 Copynumber: 6.4 Consensus size: 40
14167026 AAACCAAGTA
* * *
14167036 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCCCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* **
14167075 CCTTTGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
14167115 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
14167155 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
**
14167195 CCTTCGGGACTTAGCTTGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
14167235 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
14167275 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
14167292 CGTTATCATC
Statistics
Matches: 197, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 13 0.07
40 184 0.93
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:14175233 original size:40 final size:40
Alignment explanation
Indices: 14175188--14175309 Score: 201
Period size: 40 Copynumber: 3.0 Consensus size: 40
14175178 CGAGATTTAA
*
14175188 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
14175228 CCGGATATAGTAACTCGCACAAATGCCTTCGGTACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
14175268 CCGGATATAGTAACTCGCACAAATGCCTTCGGGAATTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
14175308 CC
1 CC
14175310 CGTTATCATC
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
39 1 0.01
40 76 0.99
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:14192038 original size:64 final size:64
Alignment explanation
Indices: 14191957--14192140 Score: 178
Period size: 67 Copynumber: 2.8 Consensus size: 64
14191947 AGACATTATG
* * *
14191957 ATGTAGCTAGGTCGCATGGGTGATACTATGTATACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTATACACCATGTAGACAAGAGAGCTACGAGATAA
** * * * * *
14192021 ATGTAGCTAGGTCGCATGCTTGGTTCCAGGTCAAGGACACCATGTAGGCAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGT--A-TACACCATGTAGACAAGAGAGCTACGAGAT
14192086 AA
63 AA
* *
14192088 AT-TGGCTAGGTCACATGGGTGGTACTGAGTGT-T-CACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-A-TGTATACACCATGTAG-ACAAGAGAGC
14192141 CGAACTATAT
Statistics
Matches: 95, Mismatches: 19, Indels: 13
0.75 0.15 0.10
Matches are distributed among these distances:
62 1 0.01
63 17 0.18
64 25 0.26
66 19 0.20
67 31 0.33
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTATACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:14193463 original size:18 final size:19
Alignment explanation
Indices: 14193437--14193473 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
14193427 TAAAATGAGT
*
14193437 ATGAGATACAAATG-TATG
1 ATGACATACAAATGCTATG
14193455 ATGACATACAAATGCTATG
1 ATGACATACAAATGCTATG
14193474 TTTGTGGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.43, C:0.11, G:0.19, T:0.27
Consensus pattern (19 bp):
ATGACATACAAATGCTATG
Found at i:14195221 original size:61 final size:58
Alignment explanation
Indices: 14195118--14195229 Score: 161
Period size: 61 Copynumber: 1.9 Consensus size: 58
14195108 ATCACTTTAA
* *
14195118 TATTAAATTAATATAATACTTATCAAGATAAATACTAGATTAAATTTAATACTAAATC
1 TATTAAATTAATAGAATACTTATCAAGATAAATACTACATTAAATTTAATACTAAATC
* *
14195176 TATTAAATTAATAGAATATTTATTTACAAGATAAATATTACATTAAATTTAATA
1 TATTAAATTAATAGAATACTTA--T-CAAGATAAATACTACATTAAATTTAATA
14195230 TTAAGATAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
58 20 0.43
60 1 0.02
61 26 0.55
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (58 bp):
TATTAAATTAATAGAATACTTATCAAGATAAATACTACATTAAATTTAATACTAAATC
Found at i:14205503 original size:26 final size:26
Alignment explanation
Indices: 14205467--14205516 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14205457 GGTAAGTTCA
*
14205467 TATATATGTTTTATTATTATTGAAAT
1 TATATATGTTTTATTATCATTGAAAT
14205493 TATATATGTTTTATTATCATTGAA
1 TATATATGTTTTATTATCATTGAA
14205517 TTGCTATGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.02, G:0.08, T:0.56
Consensus pattern (26 bp):
TATATATGTTTTATTATCATTGAAAT
Found at i:14205727 original size:43 final size:43
Alignment explanation
Indices: 14205632--14205733 Score: 125
Period size: 43 Copynumber: 2.4 Consensus size: 43
14205622 ATCGAGATAT
* * *
14205632 GATTACATGTAAGACAATGTCTAGGACATTGGCATTGGATTCA
1 GATTACGTGTAAGACAATGTCTAGGACATTGGCATCGGAATCA
* * *
14205675 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAATC-
1 GATTACGTGTAAGACAATGTCTAGGACATTGGCATCG-GAATCA
*
14205718 GATTTCGTGTAAGACA
1 GATTACGTGTAAGACA
14205734 CTATCCGGGA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
43 47 0.94
44 3 0.06
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (43 bp):
GATTACGTGTAAGACAATGTCTAGGACATTGGCATCGGAATCA
Found at i:14208101 original size:41 final size:41
Alignment explanation
Indices: 14208050--14208179 Score: 145
Period size: 41 Copynumber: 3.2 Consensus size: 41
14208040 AAAGACAGGC
* * * *
14208050 AATAGCGGCATTTCTGCCACAAATGCCGCAAAAGGTAAGGC
1 AATAGCGGCATTTTTACCATAAATGCCGCAAAAGGTAAGGA
* * *** * *
14208091 AATAGTGGCATTTTTCCCATAAACATCG-TAAAGGTTAGGA
1 AATAGCGGCATTTTTACCATAAATGCCGCAAAAGGTAAGGA
*
14208131 AATAGCGACATTTTTACCATAAATGCCGCAAAAGGTAAGGA
1 AATAGCGGCATTTTTACCATAAATGCCGCAAAAGGTAAGGA
14208172 AATAGCGG
1 AATAGCGG
14208180 TGTTTCTACC
Statistics
Matches: 69, Mismatches: 19, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
40 31 0.45
41 38 0.55
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.22
Consensus pattern (41 bp):
AATAGCGGCATTTTTACCATAAATGCCGCAAAAGGTAAGGA
Found at i:14208302 original size:23 final size:22
Alignment explanation
Indices: 14208276--14208331 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
14208266 AACGATGCCG
14208276 TTTTATTTTTTCCCCCGATTCCC
1 TTTT-TTTTTTCCCCCGATTCCC
* * *
14208299 TTTTCTTTCTCGCCCGATTCCC
1 TTTTTTTTTTCCCCCGATTCCC
*
14208321 TTTTCTTTTTC
1 TTTTTTTTTTC
14208332 AGCCTGTTCT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 25 0.86
23 4 0.14
ACGTcount: A:0.05, C:0.34, G:0.05, T:0.55
Consensus pattern (22 bp):
TTTTTTTTTTCCCCCGATTCCC
Found at i:14212737 original size:60 final size:62
Alignment explanation
Indices: 14212667--14212786 Score: 156
Period size: 60 Copynumber: 2.0 Consensus size: 62
14212657 TATCTCAACT
*
14212667 TGTAATAGGGCTACGGCCCAAATTGACACTGATATGGGCT-AAGCCCAG-TATACTCTGATAC
1 TGTAATAGGGCTACGGCCCAAATTAACACTGATATGGGCTAAAGCCCAGTTA-ACTCTGATAC
* * * * *
14212728 TGTAA-AGGGCTATGGCCCAGATTAATATTGATATGTGCTAAAGCCCAGTTAACTCTGAT
1 TGTAATAGGGCTACGGCCCAAATTAACACTGATATGGGCTAAAGCCCAGTTAACTCTGAT
14212787 TTTTGAATAG
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
60 28 0.55
61 21 0.41
62 2 0.04
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (62 bp):
TGTAATAGGGCTACGGCCCAAATTAACACTGATATGGGCTAAAGCCCAGTTAACTCTGATAC
Found at i:14219541 original size:50 final size:50
Alignment explanation
Indices: 14219465--14219705 Score: 257
Period size: 50 Copynumber: 4.8 Consensus size: 50
14219455 TTGTGAGAAG
* * * *
14219465 ACATGTGTAATACTAAGTTCAGGCTACTACGTGTACCAAATTGTTGGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTC
* * * * * * *
14219515 GCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGATC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGTC
* * * * *
14219566 ACATGTGTAGTTCTAAGTGCAGGCTAATACGTGTATCTGATGGTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTC
* * *
14219616 ACGTGTGTAGTACTAAGTGTAGGCTACTACATGTACCAGATTGTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTC
* * * * *
14219666 GCATGTGTAGTACTAAATGTAGGCTACTATGCGTACCAGA
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
14219706 GAGCTTCGGT
Statistics
Matches: 156, Mismatches: 34, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
50 116 0.74
51 40 0.26
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTC
Found at i:14219652 original size:101 final size:101
Alignment explanation
Indices: 14219465--14219652 Score: 241
Period size: 101 Copynumber: 1.9 Consensus size: 101
14219455 TTGTGAGAAG
* * * * *
14219465 ACATGTGTAATACTAAGTTCAGGCTACTACGTGTACCAAATTGTTGGGTCGCATGTGTAGTACTA
1 ACATGTGTAATACTAAGTGCAGGCTAATACGTGTACCAAATGGTTAGGTCACATGTGTAGTACTA
**
14219530 AGTGCAGGCTACTATGCGTACCCGATAGCTTCGATC
66 AGTGCAGGCTACTACACGTACCCGATAGCTTCGATC
* * * ** *
14219566 ACATGTGTAGTTCTAAGTGCAGGCTAATACGTGTATCTGATGGTTAGGTCACGTGTGTAGTACTA
1 ACATGTGTAATACTAAGTGCAGGCTAATACGTGTACCAAATGGTTAGGTCACATGTGTAGTACTA
* *
14219631 AGTGTAGGCTACTACATGTACC
66 AGTGCAGGCTACTACACGTACC
14219653 AGATTGTTAG
Statistics
Matches: 72, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
101 72 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31
Consensus pattern (101 bp):
ACATGTGTAATACTAAGTGCAGGCTAATACGTGTACCAAATGGTTAGGTCACATGTGTAGTACTA
AGTGCAGGCTACTACACGTACCCGATAGCTTCGATC
Found at i:14219740 original size:151 final size:151
Alignment explanation
Indices: 14219468--14219740 Score: 377
Period size: 151 Copynumber: 1.8 Consensus size: 151
14219458 TGAGAAGACA
* * *
14219468 TGTGTAATACTAAGTTCAGGCTACTACGTGTACCAAATTGTTGGGTCGCATGTGTAGTACTAAGT
1 TGTGTAATACTAAGTTCAGGCTACTACATGTACCAAATTGTTAGGTCGCATGTGTAGTACTAAAT
* * * * ** *
14219533 GCAGGCTACTATGCGTACCCGATAGCTTCGATCACATGTGTAGTTCTAAGTGCAGGCTAATACGT
66 GCAGGCTACTATGCGTACCAGAGAGCTTCGATCACAAGGGTAGTAATAAGTACAGGCTAATACGT
14219598 GTATCTGATGGTTAGGTCACG
131 GTATCTGATGGTTAGGTCACG
* *
14219619 TGTGTAGTACTAAGTGT-AGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAA
1 TGTGTAATACTAAGT-TCAGGCTACTACATGTACCAAATTGTTAGGTCGCATGTGTAGTACTAAA
* * * * *
14219683 TGTAGGCTACTATGCGTACCAGAGAGCTTCGGTTACAAGGGTGGTAATATGTACAGGC
65 TGCAGGCTACTATGCGTACCAGAGAGCTTCGATCACAAGGGTAGTAATAAGTACAGGC
14219741 CACTTGGTAT
Statistics
Matches: 104, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
151 103 0.99
152 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (151 bp):
TGTGTAATACTAAGTTCAGGCTACTACATGTACCAAATTGTTAGGTCGCATGTGTAGTACTAAAT
GCAGGCTACTATGCGTACCAGAGAGCTTCGATCACAAGGGTAGTAATAAGTACAGGCTAATACGT
GTATCTGATGGTTAGGTCACG
Found at i:14244195 original size:16 final size:17
Alignment explanation
Indices: 14244170--14244203 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
14244160 TAAGACTGAT
*
14244170 GAAATGAGGTTTA-CAA
1 GAAATAAGGTTTATCAA
14244186 GAAATAAGGTTTATCAA
1 GAAATAAGGTTTATCAA
14244203 G
1 G
14244204 GTCATTTGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.44, C:0.06, G:0.24, T:0.26
Consensus pattern (17 bp):
GAAATAAGGTTTATCAA
Found at i:14246172 original size:69 final size:70
Alignment explanation
Indices: 14246040--14246172 Score: 214
Period size: 69 Copynumber: 1.9 Consensus size: 70
14246030 TAGTTTATTA
* * * * *
14246040 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
14246105 CTTAG
66 CTTAG
14246110 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
14246173 GTTATGTACT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 35 0.60
70 23 0.40
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:14247614 original size:47 final size:47
Alignment explanation
Indices: 14247560--14247872 Score: 482
Period size: 47 Copynumber: 6.6 Consensus size: 47
14247550 TATTTGAATA
* * *
14247560 AATGTGAAAGTGTATATATGTGATAAGACCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
14247607 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
14247654 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
14247703 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
14247750 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
14247799 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
14247846 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
14247873 TCCCGAAGGG
Statistics
Matches: 245, Mismatches: 17, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 155 0.63
49 90 0.37
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:14247689 original size:96 final size:96
Alignment explanation
Indices: 14247560--14247872 Score: 553
Period size: 96 Copynumber: 3.3 Consensus size: 96
14247550 TATTTGAATA
*
14247560 AATGTGAAAGTG--TATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
14247623 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
14247654 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
14247719 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
14247750 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
14247815 TATGTGATAGGGCCGAGTGGCCAACGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
14247846 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
14247873 TCCCGAAGGG
Statistics
Matches: 212, Mismatches: 5, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
94 22 0.10
95 1 0.00
96 189 0.89
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:14247719 original size:143 final size:142
Alignment explanation
Indices: 14247560--14247872 Score: 484
Period size: 143 Copynumber: 2.2 Consensus size: 142
14247550 TATTTGAATA
* *
14247560 AATGTGAAAGTGTATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTG-TATAT
1 AATGTGAAAGTGTATATATGTGATAAGACCGAATGGCCAATGTGATGAATGTGAAAGTGATATAT
*
14247624 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAA
* *
14247689 TGGCCGATGTGATG
129 TGGCCAACGTGATG
*
14247703 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGACCGAATGGCCAATGTGATGAATGTGAAAGTG-ATATA
* * * *
14247768 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGT
65 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
14247833 GGCCAACGTGATG
130 GGCCAACGTGATG
* *
14247846 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
14247873 TCCCGAAGGG
Statistics
Matches: 156, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
143 111 0.71
145 45 0.29
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.29
Consensus pattern (142 bp):
AATGTGAAAGTGTATATATGTGATAAGACCGAATGGCCAATGTGATGAATGTGAAAGTGATATAT
ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
GCCAACGTGATG
Found at i:14250149 original size:24 final size:24
Alignment explanation
Indices: 14250117--14250162 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
14250107 ATTTCACTTC
*
14250117 GGAGAGTGCCGGATGAAGAGCGTT
1 GGAGAGTGCCGGATAAAGAGCGTT
*
14250141 GGAGAGTGCTGGATAAAGAGCG
1 GGAGAGTGCCGGATAAAGAGCG
14250163 GTGTGTGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.28, C:0.11, G:0.46, T:0.15
Consensus pattern (24 bp):
GGAGAGTGCCGGATAAAGAGCGTT
Found at i:14253949 original size:25 final size:25
Alignment explanation
Indices: 14253903--14253951 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
14253893 TGAACAAATT
*
14253903 TCAAAATTTTATCGGGGGTAAAATCA
1 TCAAAATTTTATC-GGGATAAAATCA
14253929 TCAAAATTTTAGT-GGGATAAAAT
1 TCAAAATTTTA-TCGGGATAAAAT
14253952 TGGGGTGAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 9 0.43
26 11 0.52
27 1 0.05
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.33
Consensus pattern (25 bp):
TCAAAATTTTATCGGGATAAAATCA
Found at i:14263845 original size:13 final size:13
Alignment explanation
Indices: 14263810--14263847 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
14263800 ATTTTTCAAG
*
14263810 AAAATTCTTTTAAT
1 AAAATTC-TCTAAT
14263824 AAAATTCTCTAAT
1 AAAATTCTCTAAT
14263837 AAAATTCTCTA
1 AAAATTCTCTA
14263848 GTTGAACTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 16 0.70
14 7 0.30
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (13 bp):
AAAATTCTCTAAT
Found at i:14267390 original size:13 final size:13
Alignment explanation
Indices: 14267374--14267398 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14267364 TTTTTTATGG
14267374 GTTTTTAATAAAA
1 GTTTTTAATAAAA
14267387 GTTTTTAATAAA
1 GTTTTTAATAAA
14267399 TTTTAAAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
GTTTTTAATAAAA
Found at i:14270641 original size:33 final size:33
Alignment explanation
Indices: 14270604--14270670 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
14270594 CAGCCTTGAA
*
14270604 AACACTTTAAACTACATAGTTTTCTTTTTCCCT
1 AACACTTTAAACTACATAGTTTTCTTTTTACCT
14270637 AACACTTTAAACTACATAGTTTTCTTTTTACCT
1 AACACTTTAAACTACATAGTTTTCTTTTTACCT
14270670 A
1 A
14270671 CATAGCATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.30, C:0.22, G:0.03, T:0.45
Consensus pattern (33 bp):
AACACTTTAAACTACATAGTTTTCTTTTTACCT
Found at i:14271924 original size:91 final size:91
Alignment explanation
Indices: 14271769--14271950 Score: 346
Period size: 91 Copynumber: 2.0 Consensus size: 91
14271759 TTCAAAGACA
*
14271769 GACTCAGTCTTGACCCATATCAAGCTCTTGGGGAAGAGATAAAAATATTTCAAGTCGCAGCTTTA
1 GACTCAGGCTTGACCCATATCAAGCTCTTGGGGAAGAGATAAAAATATTTCAAGTCGCAGCTTTA
14271834 CTTACAGACACCTCTGGTTATAGTTC
66 CTTACAGACACCTCTGGTTATAGTTC
14271860 GACTCAGGCTTGACCCATATCAAGCTCTTGGGGAAGAGATAAAAATATTTCAAGTCGCAGCTTTA
1 GACTCAGGCTTGACCCATATCAAGCTCTTGGGGAAGAGATAAAAATATTTCAAGTCGCAGCTTTA
*
14271925 CTTATAGACACCTCTGGTTATAGTTC
66 CTTACAGACACCTCTGGTTATAGTTC
14271951 AAGAATAGAG
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 89 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (91 bp):
GACTCAGGCTTGACCCATATCAAGCTCTTGGGGAAGAGATAAAAATATTTCAAGTCGCAGCTTTA
CTTACAGACACCTCTGGTTATAGTTC
Found at i:14279109 original size:14 final size:15
Alignment explanation
Indices: 14279092--14279120 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14279082 GAGTATGGTA
14279092 AAATA-TTAAAAAAT
1 AAATATTTAAAAAAT
14279106 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
14279121 TACTAATAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:14280487 original size:24 final size:23
Alignment explanation
Indices: 14280435--14280487 Score: 54
Period size: 24 Copynumber: 2.3 Consensus size: 23
14280425 TATTATAGAA
*
14280435 TAAATTATTTTTATTTTTAATTT
1 TAAATTATTTTTATTTTTAATAT
* *
14280458 TTAATTTTTTATTATTTTTCAA-AT
1 TAAATTATTT-TTATTTTT-AATAT
14280482 TAAATT
1 TAAATT
14280488 GAGATTCAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
23 8 0.33
24 14 0.58
25 2 0.08
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (23 bp):
TAAATTATTTTTATTTTTAATAT
Found at i:14281038 original size:80 final size:80
Alignment explanation
Indices: 14280913--14281119 Score: 211
Period size: 80 Copynumber: 2.6 Consensus size: 80
14280903 TTATTGAAAG
** * * *** *
14280913 TTTATT-TTATTTATAAAACAATAAATATTATTTTGAGGATGTTTATATTTGTCTCAATTCAATT
1 TTTATTCTT-TTTATAAAGTAATAAATATTATTTTGAGGGTGTTTATACTCAACTCAACTCAATT
* *
14280977 GTGAAAA-TACTAAAAA
65 AT-AAAATTACCAAAAA
* * * *
14280993 TTTATTCTTTTTATAAAGTAACAAATATTATTTTGAGGGTATTTATGCTCAACTCAACTCAGTTA
1 TTTATTCTTTTTATAAAGTAATAAATATTATTTTGAGGGTGTTTATACTCAACTCAACTCAATTA
14281058 TAAAATTACCAAAAA
66 TAAAATTACCAAAAA
* * * *
14281073 CTTATTCCTTTTACAAAGTAATAAAGATTTATTTTGAGGGTGTTTAT
1 TTTATTCTTTTTATAAAGTAATAAATA-TTATTTTGAGGGTGTTTAT
14281120 GTCATTTTAT
Statistics
Matches: 104, Mismatches: 20, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
79 4 0.04
80 80 0.77
81 20 0.19
ACGTcount: A:0.37, C:0.09, G:0.10, T:0.43
Consensus pattern (80 bp):
TTTATTCTTTTTATAAAGTAATAAATATTATTTTGAGGGTGTTTATACTCAACTCAACTCAATTA
TAAAATTACCAAAAA
Found at i:14285454 original size:26 final size:26
Alignment explanation
Indices: 14285422--14285529 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
14285412 TGAAATGCCC
*
14285422 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
14285448 ATTATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
14285474 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
14285500 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
14285526 ATCA
1 ATCA
14285530 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:14292545 original size:26 final size:26
Alignment explanation
Indices: 14292493--14292546 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
14292483 TGAAATGTCC
*
14292493 ATCATGGAACATTTACCTAAACTATT
1 ATCATGGAACATTTACCTAAACCATT
*
14292519 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
14292545 AT
1 AT
14292547 GTCTACAACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:14296222 original size:40 final size:40
Alignment explanation
Indices: 14296178--14296439 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
14296168 GCTCCTCGTT
* *
14296178 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
14296218 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
14296258 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
14296297 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
14296336 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
14296375 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
14296416 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
14296440 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:14303909 original size:29 final size:29
Alignment explanation
Indices: 14303846--14303913 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
14303836 TAATCAACCG
14303846 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
14303875 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
14303904 CGCACACTTA
1 CGCACACTTA
14303914 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:14304025 original size:174 final size:174
Alignment explanation
Indices: 14303735--14304062 Score: 620
Period size: 174 Copynumber: 1.9 Consensus size: 174
14303725 AACTCAAGGT
*
14303735 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
14303800 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
14303865 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
14303909 ACTTACCTTTTCCGCTGTCCAAAATTGACTTGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
14303974 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
*
14304039 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
14304063 TGTACAATTT
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 150 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:14304054 original size:29 final size:30
Alignment explanation
Indices: 14304015--14304093 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
14304005 CTTAATAATC
14304015 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
14304045 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
14304074 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
14304094 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:14306015 original size:57 final size:58
Alignment explanation
Indices: 14305933--14306053 Score: 138
Period size: 57 Copynumber: 2.1 Consensus size: 58
14305923 ATAGAAGTGG
* * * * *
14305933 TGAAAATGGAGAAATAGGAAACATTT-GAAAATGATTATGGTTTTCTGCAAGATGAAAA
1 TGAAAATAGAGAAATAGGAAACATTTAG-AAATGAATATGGTTCTCTCCAAAATGAAAA
* * * *
14305991 TTAAAATAGAG-AATTGGAATCATTTAGAAATGAATGTGGTTCTCTCCAAAATGAAAA
1 TGAAAATAGAGAAATAGGAAACATTTAGAAATGAATATGGTTCTCTCCAAAATGAAAA
14306048 TGAAAA
1 TGAAAA
14306054 ATGAACAAGG
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
57 42 0.81
58 10 0.19
ACGTcount: A:0.45, C:0.07, G:0.20, T:0.28
Consensus pattern (58 bp):
TGAAAATAGAGAAATAGGAAACATTTAGAAATGAATATGGTTCTCTCCAAAATGAAAA
Found at i:14309915 original size:27 final size:26
Alignment explanation
Indices: 14309884--14310061 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
14309874 TAAATTGTAC
14309884 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
14309911 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
14309937 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
14309965 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
14309993 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
14310020 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
14310047 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14310062 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 102 0.80
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:14310000 original size:82 final size:81
Alignment explanation
Indices: 14309885--14310040 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
14309875 AAATTGTACA
* * *
14309885 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
14309949 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
14309966 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
14310031 TGCGAGTTGA
65 TGCGAATTGA
14310041 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.73
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:14310052 original size:82 final size:81
Alignment explanation
Indices: 14309881--14310061 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
14309871 GATTAAATTG
* * *
14309881 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
14309946 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
14309962 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
14310026 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
14310044 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
14310062 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:14310072 original size:27 final size:27
Alignment explanation
Indices: 14309966--14310072 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
14309956 TGACCATGCG
* * *
14309966 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
14309994 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
14310021 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
14310048 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
14310073 CATTCGTGAA
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
27 52 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:14314664 original size:25 final size:25
Alignment explanation
Indices: 14314623--14314676 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
14314613 AAGCCAAACC
* * *
14314623 AAGCCTTTGGGACGAAATCTTTGTA
1 AAGCCTTTGGGAAGAAATATTTGGA
*
14314648 AAGCCTTTGTGAAGAAATATTTGGA
1 AAGCCTTTGGGAAGAAATATTTGGA
14314673 AAGC
1 AAGC
14314677 ATTTATAGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (25 bp):
AAGCCTTTGGGAAGAAATATTTGGA
Found at i:14327920 original size:129 final size:129
Alignment explanation
Indices: 14327718--14327974 Score: 451
Period size: 129 Copynumber: 2.0 Consensus size: 129
14327708 ATTATGGCCC
14327718 TTATGGGAGACAACGATATAACCCTTGTTATAATTCGTATAGTTATACCGATCTGGTAGAGAGCG
1 TTATGGGAGACAACGATATAACCCTTGTTATAATTCGTATAGTTATACCGATCTGGTAGAGAGCG
*
14327783 ACAAGAAAGGATGGGAAGGTGGTTACCCGACAAATGATCCTTACTACCCGTATTCCTCGTATTG
66 ACAAGAAAGGATGGGAAGGTGGTTACCCGACAAATGATCCTTACGACCCGTATTCCTCGTATTG
* * * * * *
14327847 TTATGGGAGACAATGATATGATCCTTGTTATAATTCGTATAGTTATGCCGGTCTGGTAGAGAGTG
1 TTATGGGAGACAACGATATAACCCTTGTTATAATTCGTATAGTTATACCGATCTGGTAGAGAGCG
14327912 ACAAGAAAGGATGGGAAGGTGGTTACCCGACAAATGATCCTTACGACCCGTATTCCTCGTATT
66 ACAAGAAAGGATGGGAAGGTGGTTACCCGACAAATGATCCTTACGACCCGTATTCCTCGTATT
14327975 CTTACAATGA
Statistics
Matches: 121, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
129 121 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (129 bp):
TTATGGGAGACAACGATATAACCCTTGTTATAATTCGTATAGTTATACCGATCTGGTAGAGAGCG
ACAAGAAAGGATGGGAAGGTGGTTACCCGACAAATGATCCTTACGACCCGTATTCCTCGTATTG
Found at i:14336518 original size:60 final size:60
Alignment explanation
Indices: 14336425--14336546 Score: 235
Period size: 60 Copynumber: 2.0 Consensus size: 60
14336415 TCGACGACTT
*
14336425 TTTCTTTCTCACGATTATCACTCAATTGATCCATTTCTTAATCTAAATATAATAATTTAA
1 TTTCTTTCTCACGACTATCACTCAATTGATCCATTTCTTAATCTAAATATAATAATTTAA
14336485 TTTCTTTCTCACGACTATCACTCAATTGATCCATTTCTTAATCTAAATATAATAATTTAA
1 TTTCTTTCTCACGACTATCACTCAATTGATCCATTTCTTAATCTAAATATAATAATTTAA
14336545 TT
1 TT
14336547 AAATTATTCC
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.33, C:0.19, G:0.03, T:0.45
Consensus pattern (60 bp):
TTTCTTTCTCACGACTATCACTCAATTGATCCATTTCTTAATCTAAATATAATAATTTAA
Found at i:14336521 original size:33 final size:33
Alignment explanation
Indices: 14336425--14336523 Score: 88
Period size: 33 Copynumber: 3.2 Consensus size: 33
14336415 TCGACGACTT
*
14336425 TTTCTTTCTCACGATTATCACTCAATTGATCCA
1 TTTCTTTCTCACGAATATCACTCAATTGATCCA
* *
14336458 TTTCTTAATCT-A--AATAT-AAT-AATT--T-AA
1 TTTCTT--TCTCACGAATATCACTCAATTGATCCA
*
14336485 TTTCTTTCTCACGACTATCACTCAATTGATCCA
1 TTTCTTTCTCACGAATATCACTCAATTGATCCA
14336518 TTTCTT
1 TTTCTT
14336524 AATCTAAATA
Statistics
Matches: 50, Mismatches: 6, Indels: 20
0.66 0.08 0.26
Matches are distributed among these distances:
25 3 0.06
26 1 0.02
27 7 0.14
28 5 0.10
29 2 0.04
30 8 0.16
31 2 0.04
32 5 0.10
33 13 0.26
34 1 0.02
35 3 0.06
ACGTcount: A:0.28, C:0.22, G:0.04, T:0.45
Consensus pattern (33 bp):
TTTCTTTCTCACGAATATCACTCAATTGATCCA
Found at i:14341755 original size:15 final size:16
Alignment explanation
Indices: 14341731--14341761 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
14341721 ACAAACTCTA
14341731 TTTTATTTTTATTTGT
1 TTTTATTTTTATTTGT
14341747 TTTTA-TTTTATTTGT
1 TTTTATTTTTATTTGT
14341762 CAAAGTTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.13, C:0.00, G:0.06, T:0.81
Consensus pattern (16 bp):
TTTTATTTTTATTTGT
Found at i:14344606 original size:21 final size:21
Alignment explanation
Indices: 14344582--14344638 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
14344572 TGTGCAATCT
* *
14344582 ATTTTTTTCTTTTTCAATTTA
1 ATTTTTTTCTTCTTCAATTCA
14344603 ATTTGTTTT-TTCTTCAATTCA
1 ATTT-TTTTCTTCTTCAATTCA
* *
14344624 ATTTTGTTCTCCTTC
1 ATTTTTTTCTTCTTC
14344639 TAGCCTCTCA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
20 3 0.10
21 23 0.77
22 4 0.13
ACGTcount: A:0.16, C:0.16, G:0.04, T:0.65
Consensus pattern (21 bp):
ATTTTTTTCTTCTTCAATTCA
Found at i:14345800 original size:9 final size:9
Alignment explanation
Indices: 14345777--14345823 Score: 51
Period size: 9 Copynumber: 5.3 Consensus size: 9
14345767 GTTCTGTAAA
*
14345777 TTTTTGGAC
1 TTTTTAGAC
*
14345786 TCTTTAGAC
1 TTTTTAGAC
14345795 TTTTTAGAC
1 TTTTTAGAC
*
14345804 TGTTTAGA-
1 TTTTTAGAC
*
14345812 TTTTTAAAC
1 TTTTTAGAC
14345821 TTT
1 TTT
14345824 ATTTCTGTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
8 6 0.19
9 25 0.81
ACGTcount: A:0.21, C:0.11, G:0.13, T:0.55
Consensus pattern (9 bp):
TTTTTAGAC
Found at i:14345815 original size:17 final size:17
Alignment explanation
Indices: 14345776--14345817 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
14345766 GGTTCTGTAA
*
14345776 ATTTTTGGACTCTTTAG
1 ATTTTTAGACTCTTTAG
*
14345793 ACTTTTTAGACTGTTTAG
1 A-TTTTTAGACTCTTTAG
14345811 ATTTTTA
1 ATTTTTA
14345818 AACTTTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.21, C:0.10, G:0.14, T:0.55
Consensus pattern (17 bp):
ATTTTTAGACTCTTTAG
Found at i:14346003 original size:30 final size:32
Alignment explanation
Indices: 14345962--14346020 Score: 79
Period size: 30 Copynumber: 1.9 Consensus size: 32
14345952 AAATTATAAG
14345962 TTTTAGAAAATA-AA-AA-AAACAAATAATGGT
1 TTTTAGAAAATAGAATAACAAA-AAATAATGGT
*
14345992 TTTTAGTAAATAGAATAACAAAAAATAAT
1 TTTTAGAAAATAGAATAACAAAAAATAAT
14346021 TTTGAATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 11 0.44
31 2 0.08
32 9 0.36
33 3 0.12
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.29
Consensus pattern (32 bp):
TTTTAGAAAATAGAATAACAAAAAATAATGGT
Found at i:14356915 original size:22 final size:22
Alignment explanation
Indices: 14356865--14356909 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
14356855 TTGTATTGAT
*
14356865 TAGAATATGGTTTCAATCCTAC
1 TAGAATATGGTTTCAAGCCTAC
14356887 TAGAATATGGCTTTACAAGCCTA
1 TAGAATATGG-TTT-CAAGCCTA
14356910 TAAATAGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 10 0.50
23 3 0.15
24 7 0.35
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (22 bp):
TAGAATATGGTTTCAAGCCTAC
Found at i:14357062 original size:15 final size:15
Alignment explanation
Indices: 14357026--14357054 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14357016 TTGTGTGTTC
14357026 TTTA-TTTTTATTTT
1 TTTATTTTTTATTTT
14357040 TTTATTTTTTATTTT
1 TTTATTTTTTATTTT
14357055 ATTTTTTTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.29
15 10 0.71
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (15 bp):
TTTATTTTTTATTTT
Found at i:14357920 original size:19 final size:19
Alignment explanation
Indices: 14357896--14357937 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
14357886 AGTTTAACTT
*
14357896 TTAATTAATC-TTAATTAA
1 TTAATTAACCTTTAATTAA
14357914 CTTAATTAACCTTTAATTAA
1 -TTAATTAACCTTTAATTAA
14357934 TTAA
1 TTAA
14357938 ACAAAACATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.48
Consensus pattern (19 bp):
TTAATTAACCTTTAATTAA
Found at i:14357931 original size:11 final size:10
Alignment explanation
Indices: 14357896--14357933 Score: 51
Period size: 9 Copynumber: 3.8 Consensus size: 10
14357886 AGTTTAACTT
*
14357896 TTAATTAATC
1 TTAATTAACC
14357906 TTAATTAA-C
1 TTAATTAACC
14357915 TTAATTAACC
1 TTAATTAACC
14357925 TTTAATTAA
1 -TTAATTAA
14357934 TTAAACAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.35
10 9 0.35
11 8 0.31
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (10 bp):
TTAATTAACC
Found at i:14362911 original size:12 final size:12
Alignment explanation
Indices: 14362856--14362903 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
14362846 TAATTTTAAG
14362856 AATTATATATAT
1 AATTATATATAT
* *
14362868 TA-TATAAATAGT
1 AATTATATATA-T
14362880 AATTATATATAT
1 AATTATATATAT
*
14362892 AATAATATATAT
1 AATTATATATAT
14362904 TGTTATATGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
11 7 0.24
12 15 0.52
13 7 0.24
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (12 bp):
AATTATATATAT
Found at i:14369220 original size:33 final size:33
Alignment explanation
Indices: 14369182--14369308 Score: 139
Period size: 33 Copynumber: 3.8 Consensus size: 33
14369172 ACTTGAGCCG
* *
14369182 GGAGGAGTGGAGTA-GAGCAGTGGATACGGGCCG
1 GGAGGAGTGGAGTATG-GCAGTGGATACAGGCCA
* * ** * * *
14369215 GGAGGAATAGAGTACAGCGGTGGATACAAGTCA
1 GGAGGAGTGGAGTATGGCAGTGGATACAGGCCA
*
14369248 GGAGGAGTGGAGTATGGCAGTGGATACAGGTCA
1 GGAGGAGTGGAGTATGGCAGTGGATACAGGCCA
*
14369281 GGAGGAGTGGAGTATGGCGGTGGATACA
1 GGAGGAGTGGAGTATGGCAGTGGATACA
14369309 AGCAGAAATG
Statistics
Matches: 78, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.28, C:0.10, G:0.46, T:0.16
Consensus pattern (33 bp):
GGAGGAGTGGAGTATGGCAGTGGATACAGGCCA
Found at i:14369294 original size:66 final size:66
Alignment explanation
Indices: 14369182--14369310 Score: 179
Period size: 66 Copynumber: 2.0 Consensus size: 66
14369172 ACTTGAGCCG
* *
14369182 GGAGGAGTGGAGTAGAGCAGTGGATACGGGCCGGGAGGAATAGAGTACAGCGGTGGATACAAGTC
1 GGAGGAGTGGAGTAGAGCAGTGGATACAGGCCAGGAGGAATAGAGTACAGCGGTGGATACAAGTC
14369247 A
66 A
* * * **
14369248 GGAGGAGTGGAGTATG-GCAGTGGATACAGGTCAGGAGGAGTGGAGTATGGCGGTGGATACAAG
1 GGAGGAGTGGAGTA-GAGCAGTGGATACAGGCCAGGAGGAATAGAGTACAGCGGTGGATACAAG
14369311 CAGAAATGAG
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
66 54 0.98
67 1 0.02
ACGTcount: A:0.29, C:0.10, G:0.46, T:0.16
Consensus pattern (66 bp):
GGAGGAGTGGAGTAGAGCAGTGGATACAGGCCAGGAGGAATAGAGTACAGCGGTGGATACAAGTC
A
Found at i:14369327 original size:33 final size:33
Alignment explanation
Indices: 14369215--14369327 Score: 129
Period size: 33 Copynumber: 3.4 Consensus size: 33
14369205 ATACGGGCCG
* **
14369215 GGAGGAATAGAGTACAGCGGTGGATACAAGTCA
1 GGAGGAGTAGAGTATGGCGGTGGATACAAGTCA
* * *
14369248 GGAGGAGTGGAGTATGGCAGTGGATACAGGTCA
1 GGAGGAGTAGAGTATGGCGGTGGATACAAGTCA
*
14369281 GGAGGAGTGGAGTATGGCGGTGGATACAAG-CA
1 GGAGGAGTAGAGTATGGCGGTGGATACAAGTCA
* *
14369313 GAAATGAGTAGAGTA
1 G-GAGGAGTAGAGTA
14369328 CTAAGGTGGA
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
32 3 0.04
33 65 0.96
ACGTcount: A:0.33, C:0.09, G:0.42, T:0.17
Consensus pattern (33 bp):
GGAGGAGTAGAGTATGGCGGTGGATACAAGTCA
Found at i:14369327 original size:66 final size:66
Alignment explanation
Indices: 14369184--14369327 Score: 157
Period size: 66 Copynumber: 2.2 Consensus size: 66
14369174 TTGAGCCGGG
* * *
14369184 AGGAGTGGAGTA-GAGCAGTGGATACGGGCCGGGAGGAATAGAGTACAGCGGTGGATACAAGTCA
1 AGGAGTAGAGTATG-GCAGTGGATACAGGCCAGGAGGAATAGAGTACAGCGGTGGATACAAGTCA
*
14369248 GG
65 GA
* * * * **
14369250 AGGAGTGGAGTATGGCAGTGGATACAGGTCAGGAGGAGTGGAGTATGGCGGTGGATACAAG-CAG
1 AGGAGTAGAGTATGGCAGTGGATACAGGCCAGGAGGAATAGAGTACAGCGGTGGATACAAGTCAG
14369314 AA
66 -A
*
14369316 ATGAGTAGAGTA
1 AGGAGTAGAGTA
14369328 CTAAGGTGGA
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
65 3 0.05
66 62 0.94
67 1 0.02
ACGTcount: A:0.31, C:0.10, G:0.43, T:0.16
Consensus pattern (66 bp):
AGGAGTAGAGTATGGCAGTGGATACAGGCCAGGAGGAATAGAGTACAGCGGTGGATACAAGTCAG
A
Found at i:14371640 original size:33 final size:32
Alignment explanation
Indices: 14371603--14371701 Score: 84
Period size: 30 Copynumber: 3.2 Consensus size: 32
14371593 TATTATTTTT
14371603 AATTTACATTACTAAAAACTCACAAAATACAAC
1 AATTTA-ATTACTAAAAACTCACAAAATACAAC
* * *
14371636 AATTT-A-TAATAAATTACTAACAAAAT---A-
1 AATTTAATTACTAAA-AACTCACAAAATACAAC
* *
14371663 ATTTTATATTACTAAAAACTCACAAAACACAAC
1 AATTTA-ATTACTAAAAACTCACAAAATACAAC
14371696 AATTTA
1 AATTTA
14371702 TAATAAATTA
Statistics
Matches: 49, Mismatches: 9, Indels: 16
0.66 0.12 0.22
Matches are distributed among these distances:
27 4 0.08
28 1 0.02
29 10 0.20
30 12 0.24
31 11 0.22
32 1 0.02
33 10 0.20
ACGTcount: A:0.55, C:0.16, G:0.00, T:0.29
Consensus pattern (32 bp):
AATTTAATTACTAAAAACTCACAAAATACAAC
Found at i:14371660 original size:31 final size:31
Alignment explanation
Indices: 14371624--14371722 Score: 100
Period size: 31 Copynumber: 3.3 Consensus size: 31
14371614 CTAAAAACTC
14371624 ACAAAATACAACAATTTATAATAAATTACTA
1 ACAAAATACAACAATTTATAATAAATTACTA
* * *
14371655 ACAAAAT---A-ATTTTATATTACTAAA-AACTC
1 ACAAAATACAACAATTTATA--A-TAAATTACTA
*
14371684 ACAAAACACAACAATTTATAATAAATTACTA
1 ACAAAATACAACAATTTATAATAAATTACTA
14371715 ACAAAATA
1 ACAAAATA
14371723 TTTAACAAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 16
0.68 0.11 0.21
Matches are distributed among these distances:
27 7 0.13
28 1 0.02
29 10 0.19
30 8 0.15
31 18 0.35
32 1 0.02
33 7 0.13
ACGTcount: A:0.58, C:0.14, G:0.00, T:0.28
Consensus pattern (31 bp):
ACAAAATACAACAATTTATAATAAATTACTA
Found at i:14371675 original size:60 final size:60
Alignment explanation
Indices: 14371605--14371722 Score: 218
Period size: 60 Copynumber: 2.0 Consensus size: 60
14371595 TTATTTTTAA
*
14371605 TTTACATTACTAAAAACTCACAAAATACAACAATTTATAATAAATTACTAACAAAATAAT
1 TTTACATTACTAAAAACTCACAAAACACAACAATTTATAATAAATTACTAACAAAATAAT
*
14371665 TTTATATTACTAAAAACTCACAAAACACAACAATTTATAATAAATTACTAACAAAATA
1 TTTACATTACTAAAAACTCACAAAACACAACAATTTATAATAAATTACTAACAAAATA
14371723 TTTAACAAAA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.55, C:0.15, G:0.00, T:0.30
Consensus pattern (60 bp):
TTTACATTACTAAAAACTCACAAAACACAACAATTTATAATAAATTACTAACAAAATAAT
Found at i:14371827 original size:33 final size:32
Alignment explanation
Indices: 14371780--14371886 Score: 77
Period size: 33 Copynumber: 3.4 Consensus size: 32
14371770 GAAACACAAC
*
14371780 AATTTATAATATAATCCTAAATTACTAATAAATT
1 AATTT-TAAAATAATCCTAAATTACTAA-AAATT
14371814 AATTTTAAAATAAT--TACAA--AC-AAACAA-T
1 AATTTTAAAATAATCCTA-AATTACTAAA-AATT
* * *
14371842 --TTATAACATTATCCTAAATTACTAACAAATT
1 AATTTTAAAATAATCCTAAATTACTAA-AAATT
14371873 AATTTTAAAATAAT
1 AATTTTAAAATAAT
14371887 TATAAAAAAC
Statistics
Matches: 55, Mismatches: 7, Indels: 23
0.65 0.08 0.27
Matches are distributed among these distances:
26 9 0.16
27 2 0.04
28 4 0.07
29 6 0.11
30 6 0.11
31 4 0.07
32 2 0.04
33 17 0.31
34 5 0.09
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.37
Consensus pattern (32 bp):
AATTTTAAAATAATCCTAAATTACTAAAAATT
Found at i:14371828 original size:26 final size:26
Alignment explanation
Indices: 14371799--14371888 Score: 74
Period size: 26 Copynumber: 3.2 Consensus size: 26
14371789 TATAATCCTA
*
14371799 AATTACTAATAAATTAATTTTAAAAT
1 AATTACTAACAAATTAATTTTAAAAT
* *
14371825 AATTACAAACAAA-CAATTTATAACATTATCCT
1 AATTACTAACAAATTAATTT-TAA-A--A---T
14371857 AAATTACTAACAAATTAATTTTAAAAT
1 -AATTACTAACAAATTAATTTTAAAAT
14371884 AATTA
1 AATTA
14371889 TAAAAAACAA
Statistics
Matches: 50, Mismatches: 5, Indels: 18
0.68 0.07 0.25
Matches are distributed among these distances:
25 5 0.10
26 19 0.38
27 2 0.04
29 1 0.02
30 1 0.02
32 2 0.04
33 15 0.30
34 5 0.10
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (26 bp):
AATTACTAACAAATTAATTTTAAAAT
Found at i:14371843 original size:59 final size:59
Alignment explanation
Indices: 14371771--14371898 Score: 204
Period size: 59 Copynumber: 2.2 Consensus size: 59
14371761 ATACTAAACG
* *
14371771 AAACACAACAATTTATAATATAATCCTAAATTACTAATAAATTAATTTTAAAATAATTAC
1 AAACA-AACAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
* *
14371831 AAACAAACAATTTATAACATTATCCTAAATTACTAACAAATTAATTTTAAAATAATTAT
1 AAACAAACAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
14371890 AAA-AAACAA
1 AAACAAACAA
14371899 AAAAAATTTA
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
58 6 0.09
59 53 0.83
60 5 0.08
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (59 bp):
AAACAAACAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
Found at i:14372062 original size:3 final size:3
Alignment explanation
Indices: 14372056--14372103 Score: 71
Period size: 3 Copynumber: 16.3 Consensus size: 3
14372046 ACATTACCTT
* *
14372056 TTC TTC TTC TTC TTC TTT TTC TTC TTC TTC TTC CTC TTC TT- TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
14372103 T
1 T
14372104 CCTTTCCTTC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:14372121 original size:11 final size:10
Alignment explanation
Indices: 14372052--14372121 Score: 51
Period size: 9 Copynumber: 7.2 Consensus size: 10
14372042 TAATACATTA
14372052 CCTT-TTCTT
1 CCTTCTTCTT
14372061 -CTTCTTCTT
1 CCTTCTTCTT
*
14372070 -CTTTTTCTT
1 CCTTCTTCTT
14372079 -CTTCTTCTT
1 CCTTCTTCTT
14372088 CC-TCTTCTTT
1 CCTTCTTC-TT
* *
14372098 TCTTCTCCTTT
1 CCTTCTTC-TT
14372109 CCTTCTCTCTT
1 CCTTCT-TCTT
14372120 CC
1 CC
14372122 GGTGCTTGAA
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
8 3 0.06
9 26 0.52
10 4 0.08
11 16 0.32
12 1 0.02
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (10 bp):
CCTTCTTCTT
Found at i:14372673 original size:10 final size:10
Alignment explanation
Indices: 14372658--14372682 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14372648 ATAATTTCAG
14372658 ATTTTTCAAT
1 ATTTTTCAAT
14372668 ATTTTTCAAT
1 ATTTTTCAAT
14372678 ATTTT
1 ATTTT
14372683 GAAATTTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (10 bp):
ATTTTTCAAT
Found at i:14372805 original size:31 final size:32
Alignment explanation
Indices: 14372748--14372809 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
14372738 AAAAAATCTA
* *
14372748 AAAAGTTTAAATAATTATTAAAAATAAAAAAT
1 AAAAGTTTAAATAAATATGAAAAATAAAAAAT
*
14372780 AAAATTTTAAA-AAATATGAAAAATAAAAAA
1 AAAAGTTTAAATAAATATGAAAAATAAAAAA
14372810 AATTAAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 17 0.63
32 10 0.37
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.27
Consensus pattern (32 bp):
AAAAGTTTAAATAAATATGAAAAATAAAAAAT
Found at i:14372809 original size:32 final size:32
Alignment explanation
Indices: 14372748--14372824 Score: 84
Period size: 33 Copynumber: 2.4 Consensus size: 32
14372738 AAAAAATCTA
* * *
14372748 AAAAGTTTAAATAATTATTAAAAAT-AAAAAAT
1 AAAATTTTAAA-AAATATGAAAAATAAAAAAAT
14372780 AAAATTTTAAAAAATATGAAAAATAAAAAAAAT
1 AAAATTTTAAAAAATATGAAAAAT-AAAAAAAT
* *
14372813 TAAATTATAAAA
1 AAAATTTTAAAA
14372825 GATGAAAATA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
31 11 0.29
32 10 0.26
33 17 0.45
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (32 bp):
AAAATTTTAAAAAATATGAAAAATAAAAAAAT
Found at i:14372824 original size:15 final size:15
Alignment explanation
Indices: 14372764--14372839 Score: 57
Period size: 15 Copynumber: 4.9 Consensus size: 15
14372754 TTAAATAATT
14372764 ATTAAAA-ATAAAAA
1 ATTAAAATATAAAAA
*
14372778 A-TAAAATTTTAAAAA
1 ATTAAAA-TATAAAAA
*
14372793 ATATGAAAAATAAAAAAA
1 AT-T--AAAATATAAAAA
* *
14372811 ATTAAATTATAAAAG
1 ATTAAAATATAAAAA
*
14372826 ATGAAAATATAAAA
1 ATTAAAATATAAAA
14372840 GCTATTGTTT
Statistics
Matches: 48, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
13 5 0.10
14 1 0.02
15 28 0.58
17 2 0.04
18 8 0.17
19 4 0.08
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (15 bp):
ATTAAAATATAAAAA
Found at i:14373925 original size:14 final size:14
Alignment explanation
Indices: 14373878--14373925 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
14373868 GTACAAACGG
* *
14373878 AATGGTAGGAACGA
1 AATGGTAAGAACAA
*
14373892 AAGGGTAAGAACAA
1 AATGGTAAGAACAA
*
14373906 AATGGTATGAACAA
1 AATGGTAAGAACAA
*
14373920 ATTGGT
1 AATGGT
14373926 CGGTTTAGGT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.46, C:0.06, G:0.29, T:0.19
Consensus pattern (14 bp):
AATGGTAAGAACAA
Found at i:14381622 original size:37 final size:37
Alignment explanation
Indices: 14381572--14381647 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
14381562 TATAAGCAGA
*
14381572 AATAGTATTTTTATTCTTATTAATAATATTTAGTTTG
1 AATAGTATTTTTATTCTTATTAATAATATTAAGTTTG
14381609 AATAGTATTTTTATTCTTATTAATAATATTAAGTTTG
1 AATAGTATTTTTATTCTTATTAATAATATTAAGTTTG
14381646 AA
1 AA
14381648 CATGCTTTCA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.36, C:0.03, G:0.08, T:0.54
Consensus pattern (37 bp):
AATAGTATTTTTATTCTTATTAATAATATTAAGTTTG
Found at i:14403946 original size:3 final size:3
Alignment explanation
Indices: 14403938--14403966 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
14403928 TAAATGCATT
14403938 TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
14403967 TTATCACCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:14407717 original size:25 final size:25
Alignment explanation
Indices: 14407688--14407738 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
14407678 AGAACCAACT
14407688 AAACAAGAAGCG-AAAAAGAAAGAAG
1 AAACAAGAAG-GAAAAAAGAAAGAAG
* *
14407713 AAACATGGAGGAAAAAAGAAAGAAG
1 AAACAAGAAGGAAAAAAGAAAGAAG
14407738 A
1 A
14407739 GAAAAGACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 1 0.04
25 22 0.96
ACGTcount: A:0.67, C:0.06, G:0.25, T:0.02
Consensus pattern (25 bp):
AAACAAGAAGGAAAAAAGAAAGAAG
Found at i:14408593 original size:22 final size:22
Alignment explanation
Indices: 14408568--14408610 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
14408558 GATGGATAAG
14408568 CATGCAATGCCAATAATTCAAT
1 CATGCAATGCCAATAATTCAAT
14408590 CATGCAATGCCAATAATTCAA
1 CATGCAATGCCAATAATTCAA
14408611 AAACTACTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.42, C:0.23, G:0.09, T:0.26
Consensus pattern (22 bp):
CATGCAATGCCAATAATTCAAT
Found at i:14409597 original size:19 final size:18
Alignment explanation
Indices: 14409547--14409597 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
14409537 AAAAAGTTTT
14409547 AAAA-TTATA-TTATAAA
1 AAAATTTATATTTATAAA
* *
14409563 TAAATATATATATTATAAA
1 AAAATTTATAT-TTATAAA
14409582 AACAATTTATATTTAT
1 AA-AATTTATATTTAT
14409598 TTTATAAAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
16 3 0.11
17 4 0.15
19 12 0.44
20 8 0.30
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (18 bp):
AAAATTTATATTTATAAA
Found at i:14412121 original size:19 final size:20
Alignment explanation
Indices: 14412079--14412121 Score: 54
Period size: 18 Copynumber: 2.2 Consensus size: 20
14412069 AAAAGTGATC
14412079 AAAAAGTACAAAAAAAAAAG
1 AAAAAGTACAAAAAAAAAAG
* *
14412099 -AAAA-TACGAAAAGAAAAG
1 AAAAAGTACAAAAAAAAAAG
14412117 AAAAA
1 AAAAA
14412122 ATAAAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.79, C:0.05, G:0.12, T:0.05
Consensus pattern (20 bp):
AAAAAGTACAAAAAAAAAAG
Found at i:14412122 original size:20 final size:17
Alignment explanation
Indices: 14412079--14412129 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 17
14412069 AAAAGTGATC
*
14412079 AAAAAGTACAAAAAAAA
1 AAAAAATACAAAAAAAA
14412096 AAGAAAATACGAAAAGAAAA
1 AA-AAAATAC-AAAA-AAAA
14412116 GAAAAAATA-AAAAA
1 -AAAAAATACAAAAA
14412130 TTTGTGGGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
17 3 0.10
18 10 0.34
19 4 0.14
20 10 0.34
21 2 0.07
ACGTcount: A:0.80, C:0.04, G:0.10, T:0.06
Consensus pattern (17 bp):
AAAAAATACAAAAAAAA
Found at i:14412128 original size:18 final size:18
Alignment explanation
Indices: 14412086--14412129 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
14412076 ATCAAAAAGT
*
14412086 ACAAAAAAAAAAGAAAAT
1 ACAAAAAAAAAAGAAAAA
* *
14412104 ACGAAAAGAAAAGAAAAA
1 ACAAAAAAAAAAGAAAAA
*
14412122 ATAAAAAA
1 ACAAAAAA
14412130 TTTGTGGGTT
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.82, C:0.05, G:0.09, T:0.05
Consensus pattern (18 bp):
ACAAAAAAAAAAGAAAAA
Found at i:14417947 original size:111 final size:113
Alignment explanation
Indices: 14417763--14417974 Score: 356
Period size: 111 Copynumber: 1.9 Consensus size: 113
14417753 CATAAATCCA
*
14417763 AGGTCATAATAATTATTTTATTATTATTTTAATGTCTACAGCATGATAATATGTTTGTTTGAAAT
1 AGGTCATAATAATTA-TTTATTATTATTTTAATGTCTAAAGCATGATAATATGTTTGTTTGAAAT
*
14417828 TTTCGTTAAGAAATTTTATCATTTGAATCCTTAATTGACCACAAATCTG
65 TTTCGTTAAGAAAATTTATCATTTGAATCCTTAATTGACCACAAATCTG
*
14417877 AGGTTATAATAATTA-TT-TTATTATTTTAATGTCTAAAGCATGATAATATGTTTGTTTGAAATT
1 AGGTCATAATAATTATTTATTATTATTTTAATGTCTAAAGCATGATAATATGTTTGTTTGAAATT
* *
14417940 TTCGTTAAGAAAATTTATCGTTTGAATGCTTAATT
66 TTCGTTAAGAAAATTTATCATTTGAATCCTTAATT
14417975 TGATAAAAAG
Statistics
Matches: 93, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
111 77 0.83
112 2 0.02
114 14 0.15
ACGTcount: A:0.33, C:0.08, G:0.12, T:0.46
Consensus pattern (113 bp):
AGGTCATAATAATTATTTATTATTATTTTAATGTCTAAAGCATGATAATATGTTTGTTTGAAATT
TTCGTTAAGAAAATTTATCATTTGAATCCTTAATTGACCACAAATCTG
Found at i:14427436 original size:52 final size:50
Alignment explanation
Indices: 14427378--14427569 Score: 157
Period size: 46 Copynumber: 3.9 Consensus size: 50
14427368 TGCGCCCATT
*
14427378 TAAGACCATAGCTAGGCTATGGCATTGGTGCAATGTGATATGTGTTCCCGTA
1 TAAGACCATAGCTAGGCTATGGCATCGGTG-AATGTGATATGTGTT-CCGTA
* * * *
14427430 TAAGACCATAACTGGGCTATGGCATCGGTGTGACATGATAATATG-ATTCCGTA
1 TAAGACCATAGCTAGGCTATGGCATC-G-GTGA-ATG-TGATATGTGTTCCGTA
* * * * *
14427483 TAAGACCATATCTGGGATATGGCATCGGTG--TGTG--ATGTGATCCGTG
1 TAAGACCATAGCTAGGCTATGGCATCGGTGAATGTGATATGTGTTCCGTA
**
14427529 TAAGACCATAGC-AGGACTATGGGTTCGGTG--TGTGATATGTG
1 TAAGACCATAGCTAGG-CTATGGCATCGGTGAATGTGATATGTG
14427570 ACAATGTGCA
Statistics
Matches: 116, Mismatches: 16, Indels: 20
0.76 0.11 0.13
Matches are distributed among these distances:
45 5 0.04
46 31 0.27
47 1 0.01
48 7 0.06
51 3 0.03
52 24 0.21
53 31 0.27
54 8 0.07
55 6 0.05
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.30
Consensus pattern (50 bp):
TAAGACCATAGCTAGGCTATGGCATCGGTGAATGTGATATGTGTTCCGTA
Found at i:14427498 original size:53 final size:53
Alignment explanation
Indices: 14427378--14427514 Score: 163
Period size: 53 Copynumber: 2.6 Consensus size: 53
14427368 TGCGCCCATT
* * * * * *
14427378 TAAGACCATAGCTAGGCTATGGCATTGGTG-CAATGTGATATGTGTTCCCGTA
1 TAAGACCATAACTGGGCTATGGCATCGGTGTGAATGTAATATGTATTCCCGTA
14427430 TAAGACCATAACTGGGCTATGGCATCGGTGTGACATGATAATATG-ATT-CCGTA
1 TAAGACCATAACTGGGCTATGGCATCGGTGTGA-ATG-TAATATGTATTCCCGTA
* *
14427483 TAAGACCATATCTGGGATATGGCATCGGTGTG
1 TAAGACCATAACTGGGCTATGGCATCGGTGTG
14427515 TGATGTGATC
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
52 27 0.36
53 36 0.49
54 5 0.07
55 6 0.08
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (53 bp):
TAAGACCATAACTGGGCTATGGCATCGGTGTGAATGTAATATGTATTCCCGTA
Found at i:14427550 original size:46 final size:48
Alignment explanation
Indices: 14427378--14427570 Score: 153
Period size: 53 Copynumber: 3.9 Consensus size: 48
14427368 TGCGCCCATT
* *
14427378 TAAGACCATAGCTAGG-CTATGGCATTGGTGCAATGTGATATGTGTTCCCGTA
1 TAAGACCATAGCTAGGACTATGGCATCGGTG---TGTGA-ATGTGAT-CCGTA
* * *
14427430 TAAGACCATAACT-GGGCTATGGCATCGGTGTGACATGATAATATGATTCCGTA
1 TAAGACCATAGCTAGGACTATGGCATCGGTGTG---TG--AATGTGA-TCCGTA
* * *
14427483 TAAGACCATATCTGGGA-TATGGCATCGGTGTGTG-ATGTGATCCGTG
1 TAAGACCATAGCTAGGACTATGGCATCGGTGTGTGAATGTGATCCGTA
**
14427529 TAAGACCATAGC-AGGACTATGGGTTCGGTGTGTGATATGTGA
1 TAAGACCATAGCTAGGACTATGGCATCGGTGTGTGA-ATGTGA
14427571 CAATGTGCAA
Statistics
Matches: 118, Mismatches: 12, Indels: 26
0.76 0.08 0.17
Matches are distributed among these distances:
45 3 0.03
46 31 0.26
47 5 0.04
48 6 0.05
49 2 0.02
50 2 0.02
51 2 0.02
52 27 0.23
53 36 0.31
54 4 0.03
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.30
Consensus pattern (48 bp):
TAAGACCATAGCTAGGACTATGGCATCGGTGTGTGAATGTGATCCGTA
Found at i:14438641 original size:93 final size:93
Alignment explanation
Indices: 14438529--14438699 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
14438519 GCCCATAAGT
* *
14438529 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14438594 CGAGCTCAGATGCCTAGTTACATCTCTC
66 CGAGCTCAGATGCCTAGTTACATCTCTC
*
14438622 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
14438687 CGAGTTCGGATGC
66 CGAGCTCAGATGC
14438700 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCTC
Found at i:14438696 original size:46 final size:46
Alignment explanation
Indices: 14438521--14438696 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
14438511 TGTAACCCGC
* *
14438521 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
14438567 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC--AGATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
14438613 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
14438660 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
14438697 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 68 0.63
47 30 0.28
49 5 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:14441637 original size:39 final size:39
Alignment explanation
Indices: 14441578--14441678 Score: 166
Period size: 39 Copynumber: 2.6 Consensus size: 39
14441568 AACGTGATTT
* * *
14441578 GAAGCCCGAAGTCTAGCTGAAGCACATAAGTGCTAAACA
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
*
14441617 GAAGCCCGAAGGCTAACTGAAACACACAAGTGCTAAACA
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
14441656 GAAGCCCGAAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
14441679 TCATCAGAGC
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 57 1.00
ACGTcount: A:0.40, C:0.25, G:0.24, T:0.12
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
Found at i:14443053 original size:20 final size:18
Alignment explanation
Indices: 14443028--14443181 Score: 137
Period size: 18 Copynumber: 8.2 Consensus size: 18
14443018 TATGTATGCA
14443028 ATGTATGCAAACCCCTATAT
1 ATGTATGCAAA-CCCT-TAT
* * *
14443048 ATGTATGGAAATCCTCAT
1 ATGTATGCAAACCCTTAT
* *
14443066 ATGTATGTGAACCCCTATAT
1 ATGTATG-CAAACCCT-TAT
* *
14443086 ATGTAAGCAAACTCTTAT
1 ATGTATGCAAACCCTTAT
**
14443104 ATGTATGTGAACCCTTAT
1 ATGTATGCAAACCCTTAT
14443122 ATGTATGCAAACCCCTATAT
1 ATGTATGCAAA-CCCT-TAT
*
14443142 ATGTATGCAAAACCTTAT
1 ATGTATGCAAACCCTTAT
* **
14443160 ATTTATGTGAACCCTTAT
1 ATGTATGCAAACCCTTAT
14443178 ATGT
1 ATGT
14443182 TTGGGAAATA
Statistics
Matches: 108, Mismatches: 22, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
18 55 0.51
19 21 0.19
20 32 0.30
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (18 bp):
ATGTATGCAAACCCTTAT
Found at i:14443079 original size:38 final size:38
Alignment explanation
Indices: 14443028--14443133 Score: 137
Period size: 38 Copynumber: 2.8 Consensus size: 38
14443018 TATGTATGCA
** *
14443028 ATGTATGCAAACCCCTATATATGTATGGAAA-TCCTCAT
1 ATGTATGTGAACCCCTATATATGTATGCAAACT-CTCAT
* *
14443066 ATGTATGTGAACCCCTATATATGTAAGCAAACTCTTAT
1 ATGTATGTGAACCCCTATATATGTATGCAAACTCTCAT
14443104 ATGTATGTGAA-CCCT-TATATGTATGCAAAC
1 ATGTATGTGAACCCCTATATATGTATGCAAAC
14443134 CCCTATATAT
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
36 14 0.23
37 4 0.07
38 42 0.69
39 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33
Consensus pattern (38 bp):
ATGTATGTGAACCCCTATATATGTATGCAAACTCTCAT
Found at i:14443125 original size:56 final size:56
Alignment explanation
Indices: 14443045--14443181 Score: 188
Period size: 56 Copynumber: 2.4 Consensus size: 56
14443035 CAAACCCCTA
* * **
14443045 TATATGTATG-GAAATCCTCATATGTATGTGAACCCCTATATATGTAAGC-AAACTCT
1 TATATGTATGTG-AACCCTTATATGTATGCAAACCCCTATATATGTAAGCAAAAC-CT
*
14443101 TATATGTATGTGAACCCTTATATGTATGCAAACCCCTATATATGTATGCAAAACCT
1 TATATGTATGTGAACCCTTATATGTATGCAAACCCCTATATATGTAAGCAAAACCT
*
14443157 TATATTTATGTGAACCCTTATATGT
1 TATATGTATGTGAACCCTTATATGT
14443182 TTGGGAAATA
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
56 68 0.93
57 5 0.07
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (56 bp):
TATATGTATGTGAACCCTTATATGTATGCAAACCCCTATATATGTAAGCAAAACCT
Found at i:14443143 original size:38 final size:36
Alignment explanation
Indices: 14443040--14443181 Score: 140
Period size: 38 Copynumber: 3.8 Consensus size: 36
14443030 GTATGCAAAC
* * *
14443040 CCCTATATATGTATGGAAATCCTCATATGTATGTGAA
1 CCCT-TATATGTATGCAAACCCTTATATGTATGTGAA
* *
14443077 CCCCTATATATGTAAGCAAACTCTTATATGTATGTGAA
1 -CCCT-TATATGTATGCAAACCCTTATATGTATGTGAA
**
14443115 CCCTTATATGTATGCAAACCCCTATATATGTATGCAAA
1 CCCTTATATGTATGCAAA-CCCT-TATATGTATGTGAA
* * **
14443153 ACCTTATATTTATGTGAACCCTTATATGT
1 CCCTTATATGTATGCAAACCCTTATATGT
14443182 TTGGGAAATA
Statistics
Matches: 89, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
36 20 0.22
37 11 0.12
38 58 0.65
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (36 bp):
CCCTTATATGTATGCAAACCCTTATATGTATGTGAA
Found at i:14454034 original size:40 final size:40
Alignment explanation
Indices: 14453988--14454291 Score: 431
Period size: 40 Copynumber: 7.7 Consensus size: 40
14453978 GCTCCTCGTT
* * *
14453988 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
14454028 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
14454068 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
14454108 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
14454148 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
14454188 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * *
14454227 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TTAGTAAC-TCGCA
*
14454268 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
14454292 CATCATTCAA
Statistics
Matches: 246, Mismatches: 12, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
38 2 0.01
39 49 0.20
40 186 0.76
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:14457661 original size:32 final size:32
Alignment explanation
Indices: 14457617--14457679 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
14457607 AGCAGTAGCG
*
14457617 TGTTTTGGAAAAATTACCATAAATTGTGGGAT
1 TGTTTTGAAAAAATTACCATAAATTGTGGGAT
14457649 TGTTTTGAAAAAATTACCATAAATTGTGGGA
1 TGTTTTGAAAAAATTACCATAAATTGTGGGA
14457680 GTTGAGTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.06, G:0.21, T:0.37
Consensus pattern (32 bp):
TGTTTTGAAAAAATTACCATAAATTGTGGGAT
Found at i:14458568 original size:47 final size:47
Alignment explanation
Indices: 14458514--14458811 Score: 327
Period size: 47 Copynumber: 6.6 Consensus size: 47
14458504 TTAGGATTTT
** *
14458514 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCAAATGGCCA
* * *
14458561 ATGTGATGAATGTGAACATGCATATATGTGTTAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCAAATGGCCA
*
14458608 ATGTGATGAATGTGAACATGC--ATATG-GGT---G--ATAA-GGCC-
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCA-AATGGCCA
* * *
14458646 ---TGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCAAATGGCCA
* * *
14458690 ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCAAATGGCCA
* *
14458737 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCAAATGGCCA
* *
14458784 ATGTGATGAACGTGGAA-GTGCATATATG
1 ATGTGATGAATGT-GAACATGCATATATG
14458812 TGGTAAAGCC
Statistics
Matches: 222, Mismatches: 14, Indels: 30
0.83 0.05 0.11
Matches are distributed among these distances:
35 17 0.08
37 5 0.02
38 2 0.01
39 4 0.02
40 2 0.01
41 2 0.01
42 2 0.01
43 4 0.02
44 2 0.01
45 5 0.02
47 174 0.78
48 3 0.01
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCAAATGGCCA
Found at i:14458651 original size:35 final size:35
Alignment explanation
Indices: 14458611--14458680 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
14458601 ATGGCCAATG
*
14458611 TGATGAATGTGAACATGCATATGGGTGATAAGGCC
1 TGATGAATGTGAACATGCATATAGGTGATAAGGCC
* *
14458646 TGATGAATGTGAATATGCATATATGTGATAAGGCC
1 TGATGAATGTGAACATGCATATAGGTGATAAGGCC
14458681 GAATGGCCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.29
Consensus pattern (35 bp):
TGATGAATGTGAACATGCATATAGGTGATAAGGCC
Found at i:14458664 original size:82 final size:85
Alignment explanation
Indices: 14458564--14458793 Score: 313
Period size: 82 Copynumber: 2.6 Consensus size: 85
14458554 ATGGCCAATG
*
14458564 TGATGAATGTGAACATGCATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
*
14458629 ATATGGGTGAT-AA-GGCC-
66 ATATAGGTGATGAATGGCCA
* *
14458646 TGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATATGC
1 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
*
14458711 ATATATGTGATAAGGCCGAATGGCCAA
66 ATATAGGTGAT------GAATGGCC-A
14458738 TGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
1 --TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
14458794 CGTGGAAGTG
Statistics
Matches: 130, Mismatches: 6, Indels: 12
0.88 0.04 0.08
Matches are distributed among these distances:
82 71 0.55
89 2 0.02
90 4 0.03
94 53 0.41
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.27
Consensus pattern (85 bp):
TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
ATATAGGTGATGAATGGCCA
Found at i:14458668 original size:129 final size:129
Alignment explanation
Indices: 14458517--14458774 Score: 444
Period size: 129 Copynumber: 2.0 Consensus size: 129
14458507 GGATTTTATG
* *
14458517 TGATGAATGTGAATGTGTATATATGAGATAAGGCCAAATGGCCAATGTGATGAATGTGAACATGC
1 TGATGAATGTGAATATGCATATATGAGATAAGGCCAAATGGCCAATGTGATGAATGTGAACATGC
* *
14458582 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGGGTGATAAGGCC
66 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATAGGTGATAAGGCC
* * *
14458646 TGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATATGC
1 TGATGAATGTGAATATGCATATATGAGATAAGGCCAAATGGCCAATGTGATGAATGTGAACATGC
*
14458711 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCC
66 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATAGGTGATAAGGCC
14458775 GAATGGCCAA
Statistics
Matches: 121, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
129 121 1.00
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.28
Consensus pattern (129 bp):
TGATGAATGTGAATATGCATATATGAGATAAGGCCAAATGGCCAATGTGATGAATGTGAACATGC
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATAGGTGATAAGGCC
Found at i:14458684 original size:25 final size:25
Alignment explanation
Indices: 14458656--14458778 Score: 91
Period size: 25 Copynumber: 5.2 Consensus size: 25
14458646 TGATGAATGT
14458656 GAATATGCATATATGTGATAAGGCC
1 GAATATGCATATATGTGATAAGGCC
* * * *
14458681 GAAT-GGC-CA-ATGTGATGAATG-T
1 GAATATGCATATATGTGAT-AAGGCC
14458703 GAATATGCATATATGTGATAAGGCC
1 GAATATGCATATATGTGATAAGGCC
* * * *
14458728 GAAT-GGC-CA-ATGTGATGAATG-T
1 GAATATGCATATATGTGAT-AAGGCC
*
14458750 GAACATGCATATATGTGATAAGGCC
1 GAATATGCATATATGTGATAAGGCC
14458775 GAAT
1 GAAT
14458779 GGCCAATGTG
Statistics
Matches: 70, Mismatches: 18, Indels: 20
0.65 0.17 0.19
Matches are distributed among these distances:
22 21 0.30
23 12 0.17
24 12 0.17
25 25 0.36
ACGTcount: A:0.35, C:0.11, G:0.27, T:0.27
Consensus pattern (25 bp):
GAATATGCATATATGTGATAAGGCC
Found at i:14458696 original size:22 final size:22
Alignment explanation
Indices: 14458668--14458790 Score: 81
Period size: 22 Copynumber: 5.3 Consensus size: 22
14458658 ATATGCATAT
14458668 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * * *
14458690 ATGTGATGAATG-TGAATATGCATA
1 ATGTGAT-AAGGCCGAAT-GGC-CA
14458714 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* * *
14458737 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
14458761 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
14458784 ATGTGAT
1 ATGTGAT
14458791 GAACGTGGAA
Statistics
Matches: 75, Mismatches: 14, Indels: 24
0.66 0.12 0.21
Matches are distributed among these distances:
22 26 0.35
23 15 0.20
24 15 0.20
25 19 0.25
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:14458812 original size:47 final size:47
Alignment explanation
Indices: 14458646--14458833 Score: 297
Period size: 47 Copynumber: 4.0 Consensus size: 47
14458636 TGATAAGGCC
*
14458646 TGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
*
14458693 TGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
14458740 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
* * * * *
14458787 TGATGAACGTGGAA-GTGCATATATGTGGTAAAGCCGAATGGCTAATG
1 TGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCAATG
14458834 CGAAGTGTGT
Statistics
Matches: 134, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
47 131 0.98
48 3 0.02
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
Found at i:14458863 original size:46 final size:46
Alignment explanation
Indices: 14458807--14459035 Score: 377
Period size: 46 Copynumber: 5.0 Consensus size: 46
14458797 GGAAGTGCAT
* **
14458807 ATATGTGGTAAAGCCGAATGGCTAATGCGAAGTGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
14458853 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
14458899 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
14458945 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * * * **
14458991 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
14459036 TGTAAATATA
Statistics
Matches: 174, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 174 1.00
ACGTcount: A:0.34, C:0.10, G:0.32, T:0.24
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Done.