Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56482370
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1659275 characters in sequence are not A, C, G, or T
File 45 of 172
Found at i:14460575 original size:40 final size:40
Alignment explanation
Indices: 14460520--14460813 Score: 464
Period size: 40 Copynumber: 7.4 Consensus size: 40
14460510 TGAGAGTTAT
*
14460520 ATATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
14460560 ATATATCCGGGCTAAGTCCCAAAGAGCAATCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
14460600 ATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* **
14460640 ATATATTCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
14460680 ATATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* ** *
14460720 ATGTATGTGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
14460760 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
14460800 AT-TATCCGGGCTAA
1 ATATATCCGGGCTAA
14460814 ACCTCGAAGG
Statistics
Matches: 236, Mismatches: 18, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
39 12 0.05
40 224 0.95
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:14460931 original size:57 final size:57
Alignment explanation
Indices: 14460841--14461008 Score: 228
Period size: 57 Copynumber: 2.9 Consensus size: 57
14460831 GCTGGAATTA
* * * * * *
14460841 TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAAATCAGTAAT
* * **
14460898 TGAGGCACTATGTGTGTGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAAATCAGTAAT
* *
14460955 TGAGGCACTATGTGTGCGAGTTCTTTAATCGAGCGCTATGTGTGCGAAATCAGT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAAATCAGT
14461009 CAGTGGGCAC
Statistics
Matches: 95, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
57 95 1.00
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAAATCAGTAAT
Found at i:14460972 original size:29 final size:29
Alignment explanation
Indices: 14460873--14460974 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
14460863 CTCCAACCGA
* * * *
14460873 GCACTATGTGTGCCAAATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
* ** *
14460902 GCACTATGTGTGTGAG-TTCTTCAATCGA-
1 GCACTATGTGTGCGAGATTAGT-AATTGAG
*
14460930 GCACTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
14460959 GCACTATGTGTGCGAG
1 GCACTATGTGTGCGAG
14460975 TTCTTTAATC
Statistics
Matches: 58, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
28 22 0.38
29 36 0.62
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATTAGTAATTGAG
Found at i:14460983 original size:29 final size:28
Alignment explanation
Indices: 14460902--14461001 Score: 121
Period size: 28 Copynumber: 3.5 Consensus size: 28
14460892 AGTAGTTGAG
* *
14460902 GCACTATGTGTGTGAGTTCTTCAATCGA
1 GCACTATGTGTGCGAGTTCTTTAATCGA
** *
14460930 GCACTATGTGTGCGAGATT-GGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTTAATCGA
14460958 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTCTTTAATCGA
*
14460987 GCGCTATGTGTGCGA
1 GCACTATGTGTGCGA
14461002 AATCAGTCAG
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
28 36 0.60
29 24 0.40
ACGTcount: A:0.21, C:0.16, G:0.30, T:0.33
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTTTAATCGA
Found at i:14463241 original size:143 final size:143
Alignment explanation
Indices: 14462983--14463268 Score: 545
Period size: 143 Copynumber: 2.0 Consensus size: 143
14462973 GAATGGTCTT
14462983 GAGATTTGGCTTGATTAAATGGGTAAAATGCTAAGTGTATTAAAGATGATGTAATGGTTATTTCA
1 GAGATTTGGCTTGATTAAATGGGTAAAATGCTAAGTGTATTAAAGATGATGTAATGGTTATTTCA
14463048 GTTTATGTGAAGTAAATATAGATGATGGTTATAAGATGTTTTACGATTTGATAATGGTGATTAAA
66 GTTTATGTGAAGTAAATATAGATGATGGTTATAAGATGTTTTACGATTTGATAATGGTGATTAAA
14463113 TCTTGTAGTTAAG
131 TCTTGTAGTTAAG
*
14463126 GAGATTTGGCTTGATTAAATGGGTAAAATGCTAAGTGTATTAAAGATGATGTAATGGTTATTTCG
1 GAGATTTGGCTTGATTAAATGGGTAAAATGCTAAGTGTATTAAAGATGATGTAATGGTTATTTCA
* *
14463191 GTTTATGTGAAGTAAATATAGATGATGGTTATAAGTTGTTTTATGATTTGATAATGGTGATTAAA
66 GTTTATGTGAAGTAAATATAGATGATGGTTATAAGATGTTTTACGATTTGATAATGGTGATTAAA
14463256 TCTTGTAGTTAAG
131 TCTTGTAGTTAAG
14463269 TGTTTAGATA
Statistics
Matches: 140, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
143 140 1.00
ACGTcount: A:0.33, C:0.03, G:0.24, T:0.40
Consensus pattern (143 bp):
GAGATTTGGCTTGATTAAATGGGTAAAATGCTAAGTGTATTAAAGATGATGTAATGGTTATTTCA
GTTTATGTGAAGTAAATATAGATGATGGTTATAAGATGTTTTACGATTTGATAATGGTGATTAAA
TCTTGTAGTTAAG
Found at i:14463631 original size:39 final size:39
Alignment explanation
Indices: 14463570--14463644 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
14463560 TATCACTTTG
* *
14463570 TGTTATTTATATAAGTGGCTGTATGTTCGGCCATGGTAA
1 TGTTATTTATATAAATGACTGTATGTTCGGCCATGGTAA
14463609 TGTTATTTATATAAATGACTGTATGTTCGGCCATGG
1 TGTTATTTATATAAATGACTGTATGTTCGGCCATGG
14463645 GACTTGGCTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.24, C:0.11, G:0.24, T:0.41
Consensus pattern (39 bp):
TGTTATTTATATAAATGACTGTATGTTCGGCCATGGTAA
Found at i:14465054 original size:47 final size:47
Alignment explanation
Indices: 14465000--14465284 Score: 403
Period size: 47 Copynumber: 6.1 Consensus size: 47
14464990 TTAGGATTTT
** * *
14465000 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
14465047 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
14465094 ATGTGATGAATGTGAACATGCACATGTGT-ATTAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGA-TAAGGCCGAATGGCCA
*
14465141 ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
14465188 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
14465235 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
14465282 ATG
1 ATG
14465285 CGAAGTGTGT
Statistics
Matches: 215, Mismatches: 20, Indels: 6
0.89 0.08 0.02
Matches are distributed among these distances:
46 1 0.00
47 210 0.98
48 4 0.02
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:14465314 original size:46 final size:46
Alignment explanation
Indices: 14465258--14465440 Score: 258
Period size: 46 Copynumber: 4.0 Consensus size: 46
14465248 GGAAGTGTAT
* ***
14465258 ATATGTGGTAAAGCCGAATGGCTAATGCGAAGTGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATGG
* *
14465304 ATATGAGGTAAAGTCGAATGGCTAATACGAAACATGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATGG
*
14465350 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATGG
* * * * *
14465396 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATG
14465441 TGTAAATATA
Statistics
Matches: 122, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 122 1.00
ACGTcount: A:0.35, C:0.09, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:14467245 original size:47 final size:44
Alignment explanation
Indices: 14467184--14467350 Score: 174
Period size: 47 Copynumber: 3.6 Consensus size: 44
14467174 GTGTCGAAGC
14467184 CATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGTCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCT-ATATCTCAAGTCGATG
* * * *
14467230 CCATGTCCCAGACATGGTCTTACATTAACTATCATCTCGTAGTCAATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTAT-ATCTC-AAGTCGATG
* * * *
14467278 TATGTCCCAGACATGCCTTTCACTGGCT-TACGTCTCAAGGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTATA--TCTCAA-GTCGATG
14467324 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
14467351 CAACAATAAC
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
44 1 0.01
45 2 0.02
46 44 0.44
47 45 0.45
48 7 0.07
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTAGCTATATCTCAAGTCGATG
Found at i:14469525 original size:44 final size:44
Alignment explanation
Indices: 14469462--14469620 Score: 159
Period size: 43 Copynumber: 3.7 Consensus size: 44
14469452 TATGTGTTAT
*
14469462 CGTGTAAGACCACATCTGGGACGTTGGCATCGACT-TATGATTTA
1 CGTGTAAGACCACATCTGGGACGTTGGCATCGA-TATTTGATTTA
* **
14469506 CGTGTAAGACCACGTCTGGGACGTTAACATC-ATATTTGATTT-
1 CGTGTAAGACCACATCTGGGACGTTGGCATCGATATTTGATTTA
* * *
14469548 TGTGTAAGACC-CTGTCTGGGATAGTT-GCATCGATATTTGA-TTA
1 CGTGTAAGACCAC-ATCTGGGA-CGTTGGCATCGATATTTGATTTA
** *
14469591 AATGTAAGACCACATCTGGGATGTTGGCAT
1 CGTGTAAGACCACATCTGGGACGTTGGCAT
14469621 TGTACGAGCT
Statistics
Matches: 97, Mismatches: 11, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
41 1 0.01
42 28 0.29
43 39 0.40
44 29 0.30
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.32
Consensus pattern (44 bp):
CGTGTAAGACCACATCTGGGACGTTGGCATCGATATTTGATTTA
Found at i:14470377 original size:10 final size:10
Alignment explanation
Indices: 14470337--14470379 Score: 59
Period size: 11 Copynumber: 4.1 Consensus size: 10
14470327 TATTGAAACA
*
14470337 TATGCTTTGG
1 TATGATTTGG
14470347 TATGATTTTGG
1 TATGA-TTTGG
14470358 TATAGATTTGG
1 TAT-GATTTGG
14470369 TATGATTTGG
1 TATGATTTGG
14470379 T
1 T
14470380 TGGTGAATTG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
10 12 0.40
11 16 0.53
12 2 0.07
ACGTcount: A:0.19, C:0.02, G:0.28, T:0.51
Consensus pattern (10 bp):
TATGATTTGG
Found at i:14473197 original size:196 final size:196
Alignment explanation
Indices: 14472837--14473231 Score: 612
Period size: 196 Copynumber: 2.0 Consensus size: 196
14472827 TTGAAACCTT
*
14472837 TTGCAACTAACCTTGCTTTGTAAGTACGCACTTTACCATTCATGTCAGTTTCCTTCTTGAAAACA
1 TTGCAACTAACCTTGCTTTGTAAGTACGCACTTTACCATCCATGTCAGTTTCCTTCTTGAAAACA
* * * * *
14472902 CATTTGCACCTAATGGTGTTTGTATCTTTAGGTGGATCAATCAAGGTCCATACTTGATTATCATA
66 CATTTGCACCTAATGGTCTTTGTACCTTTAGGTGGATCAACCAAGGTCCATACCTAATTATCATA
* *
14472967 CATGGATTGCTTTCCAGGCTTCATGGCCTCCAACCATTTCTTAAAGTCCAGATCTGACATAGCCT
131 CATGGATTACTTTCCAGACTTCATGGCCTCCAACCATTTCTTAAAGTCCAGATCTGACATAGCCT
14473032 C
196 C
* * * * * *
14473033 TTGCAACTAACGTTGCTTTGTAAGTATGCACTTTGCCATCCATGTTAGTTTTCTTCTTGAAAACC
1 TTGCAACTAACCTTGCTTTGTAAGTACGCACTTTACCATCCATGTCAGTTTCCTTCTTGAAAACA
*
14473098 CATTTGCACCTAATGGTCTTTGTACCTTTAGGTGGATTAACCAAGGTCCATACCTAATTATCATA
66 CATTTGCACCTAATGGTCTTTGTACCTTTAGGTGGATCAACCAAGGTCCATACCTAATTATCATA
* * *
14473163 CATGGATTACATTT-CAGACTTGATGGCTTCCAACCATTTCTTAAAGTCTAGATCTGACATAGCC
131 CATGGATTAC-TTTCCAGACTTCATGGCCTCCAACCATTTCTTAAAGTCCAGATCTGACATAGCC
14473227 TC
195 TC
14473229 TTG
1 TTG
14473232 ATAGGTACTA
Statistics
Matches: 180, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
196 177 0.98
197 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (196 bp):
TTGCAACTAACCTTGCTTTGTAAGTACGCACTTTACCATCCATGTCAGTTTCCTTCTTGAAAACA
CATTTGCACCTAATGGTCTTTGTACCTTTAGGTGGATCAACCAAGGTCCATACCTAATTATCATA
CATGGATTACTTTCCAGACTTCATGGCCTCCAACCATTTCTTAAAGTCCAGATCTGACATAGCCT
C
Found at i:14477287 original size:35 final size:35
Alignment explanation
Indices: 14477241--14477309 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
14477231 ATTATGTTTC
14477241 AATTATTATTTATC-AAAACATATTTTAAATAATAT
1 AATTATTATTTATCTAAAAC-TATTTTAAATAATAT
*
14477276 AATTATTATTTATCTAAAACTCTTTTAAATAATA
1 AATTATTATTTATCTAAAACTATTTTAAATAATA
14477310 ACTATATTCT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
35 27 0.84
36 5 0.16
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.46
Consensus pattern (35 bp):
AATTATTATTTATCTAAAACTATTTTAAATAATAT
Found at i:14477375 original size:94 final size:94
Alignment explanation
Indices: 14477275--14477446 Score: 317
Period size: 94 Copynumber: 1.8 Consensus size: 94
14477265 TTAAATAATA
* *
14477275 TAATTATTATTTATCTAAAACTCTTTTAAATAATAACTATATTCTATTTCCTTATTTGATAAGGA
1 TAATTATTATTTATCTAAAACTCTTTTAAATAATAACTAAATTCTATTTCCTTATCTGATAAGGA
14477340 ATATATCAAATCCTTTTGCTTTTGAATTT
66 ATATATCAAATCCTTTTGCTTTTGAATTT
*
14477369 TAATTATTATTTATCTAAAACTCTTTTAAATAATAATTAAATTCTATTTCCTTATCTGATAAGGA
1 TAATTATTATTTATCTAAAACTCTTTTAAATAATAACTAAATTCTATTTCCTTATCTGATAAGGA
14477434 ATATATCAAATCC
66 ATATATCAAATCC
14477447 CCTTTTTATC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 75 1.00
ACGTcount: A:0.37, C:0.12, G:0.05, T:0.47
Consensus pattern (94 bp):
TAATTATTATTTATCTAAAACTCTTTTAAATAATAACTAAATTCTATTTCCTTATCTGATAAGGA
ATATATCAAATCCTTTTGCTTTTGAATTT
Found at i:14494260 original size:25 final size:25
Alignment explanation
Indices: 14494226--14494275 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
14494216 TAGCCTCATT
14494226 GTGTGATCTAGAAAATAATTTTAAA
1 GTGTGATCTAGAAAATAATTTTAAA
14494251 GTGTGATCTAGAAAATAATTTTAAA
1 GTGTGATCTAGAAAATAATTTTAAA
14494276 ACTTGTGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (25 bp):
GTGTGATCTAGAAAATAATTTTAAA
Found at i:14494334 original size:17 final size:17
Alignment explanation
Indices: 14494297--14494336 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
14494287 TATCAAAAGT
* * *
14494297 ATTTACTTTAAAATGTT
1 ATTTATTTTAAAATATC
14494314 ATTTATTTTAAAATATC
1 ATTTATTTTAAAATATC
14494331 ATTTAT
1 ATTTAT
14494337 CACAGAAGCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.55
Consensus pattern (17 bp):
ATTTATTTTAAAATATC
Found at i:14495270 original size:27 final size:27
Alignment explanation
Indices: 14495192--14495290 Score: 117
Period size: 27 Copynumber: 3.7 Consensus size: 27
14495182 TTATGTTATA
* * *
14495192 GGGGTATTACAGTCATTTTACCCTATA
1 GGGGTATTTCGGTCATTTTACCCTATG
* * * * *
14495219 GGGGTATTTTGATAATTCTATCCTATG
1 GGGGTATTTCGGTCATTTTACCCTATG
14495246 GGGGTATTTCGGTCATTTTACCCTATG
1 GGGGTATTTCGGTCATTTTACCCTATG
*
14495273 AGGGTATTTCGGTCATTT
1 GGGGTATTTCGGTCATTT
14495291 GATCACATAA
Statistics
Matches: 58, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.20, C:0.15, G:0.23, T:0.41
Consensus pattern (27 bp):
GGGGTATTTCGGTCATTTTACCCTATG
Found at i:14495303 original size:27 final size:27
Alignment explanation
Indices: 14495247--14495303 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
14495237 TATCCTATGG
* * *
14495247 GGGTATTTCGGTCATTTTACCCTATGA
1 GGGTATTTCGGTCATTTGACACTATAA
14495274 GGGTATTTCGGTCATTTGATCAC-ATAA
1 GGGTATTTCGGTCATTTGA-CACTATAA
14495301 GGG
1 GGG
14495304 CAAAATCATC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 24 0.92
28 2 0.08
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.37
Consensus pattern (27 bp):
GGGTATTTCGGTCATTTGACACTATAA
Found at i:14495315 original size:27 final size:27
Alignment explanation
Indices: 14495284--14495523 Score: 365
Period size: 27 Copynumber: 8.9 Consensus size: 27
14495274 GGGTATTTCG
* *
14495284 GTCATTTGATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATT
* *
14495311 ATCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATT
*
14495338 GTTATTTTATCACATAAGGGCAAAATT
1 GTCATTTTATCACATAAGGGCAAAATT
14495365 GTCATTTTATCACATAAGGGCAAAATT
1 GTCATTTTATCACATAAGGGCAAAATT
* * *
14495392 TTCATTTTATCACATAAGGGTAAATTT
1 GTCATTTTATCACATAAGGGCAAAATT
*
14495419 GTCATTTTATCACATAAGGGTAAAATT
1 GTCATTTTATCACATAAGGGCAAAATT
* *
14495446 GTCATTTTATCACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATT
14495473 GTCATTTTATCACATAAGGGCAAAATT
1 GTCATTTTATCACATAAGGGCAAAATT
*
14495500 GTCATTTTATCAGA-AAGGGCAAAA
1 GTCATTTTATCACATAAGGGCAAAA
14495524 GCATTATTTT
Statistics
Matches: 196, Mismatches: 17, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
26 10 0.05
27 186 0.95
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGCAAAATT
Found at i:14497995 original size:30 final size:30
Alignment explanation
Indices: 14497960--14498016 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
14497950 TTTTTGAGCA
* *
14497960 TAGGGGTAAAATGGTCATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTCATTTTACCAAAGTT
*
14497990 TAGGGGCAAAATGGTTATTTTACCAAA
1 TAGGGGCAAAATGGTCATTTTACCAAA
14498017 TATGGGAACT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.32
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTT
Found at i:14498463 original size:47 final size:47
Alignment explanation
Indices: 14498356--14498610 Score: 138
Period size: 47 Copynumber: 5.7 Consensus size: 47
14498346 ATTGTGGGCT
* *
14498356 AGTGTAAGACATGTCTGGGACA-CGCATTGGCCACATT---ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGG---CATTGAGATGAGAGCC
* * * *
14498402 AATGCAAGTCCATGTCTGGGACATGGCATCGGCATTGAGATGAGAGCT
1 AGTGTAAG-ACATGTCTGGGACATGGCATCGGCATTGAGATGAGAGCC
* * * *
14498450 AGTGTAAGACATGTCTAGGACAT-ACATCGACCTTGAGACCT-A-AGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCATTGAGA--TGAGAGCC
* *
14498496 AGTGTAAAACATGTCTGGGACAT-GCAT---C---GA-CT---A--C
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCATTGAGATGAGAGCC
* * * *
14498530 GGTGTAAGACCATATCTGGGACATGGCATCGAC-TTGAGATGTGAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCATTGAGATGAGAGCC
*
14498577 AGTGTAAGACCATGTCTGAGACATGGCATCGGCA
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCA
14498611 CCTTACCTAC
Statistics
Matches: 162, Mismatches: 26, Indels: 40
0.71 0.11 0.18
Matches are distributed among these distances:
34 8 0.05
35 13 0.08
36 5 0.03
37 1 0.01
39 1 0.01
40 2 0.01
41 2 0.01
42 1 0.01
43 1 0.01
45 5 0.03
46 45 0.28
47 57 0.35
48 21 0.13
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCATTGAGATGAGAGCC
Found at i:14498567 original size:81 final size:82
Alignment explanation
Indices: 14498451--14498607 Score: 203
Period size: 81 Copynumber: 1.9 Consensus size: 82
14498441 ATGAGAGCTA
* *
14498451 GTGTAAGACATGTCTAGGACATACATCGACCTTGAGACCTAAGCCAGTGTAA-AACATGTCTGGG
1 GTGTAAGACATATCTAGGACATACATCGACCTTGAGACCTAAGCCAGTGTAAGAACATGTCTGAG
14498515 ACAT-GCATCGACTACG
66 ACATGGCATCGACTACG
* * ** * *
14498531 GTGTAAGACCATATCTGGGACATGGCATCGA-CTTGAGATGTGAGCCAGTGTAAGACCATGTCTG
1 GTGTAAGA-CATATCTAGGACAT-ACATCGACCTTGAGACCTAAGCCAGTGTAAGAACATGTCTG
14498595 AGACATGGCATCG
64 AGACATGGCATCG
14498608 GCACCTTACC
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
80 8 0.12
81 31 0.48
82 20 0.31
83 6 0.09
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (82 bp):
GTGTAAGACATATCTAGGACATACATCGACCTTGAGACCTAAGCCAGTGTAAGAACATGTCTGAG
ACATGGCATCGACTACG
Found at i:14500468 original size:63 final size:63
Alignment explanation
Indices: 14500350--14500573 Score: 245
Period size: 63 Copynumber: 3.6 Consensus size: 63
14500340 AACATCCTGA
* * * * * * *
14500350 TACACGGCCTGGGCACACGCCCATATGCCTTGGCCGTGTGGTTTTTA-ACCACAAACAGTGAGT
1 TACACGGCCTGGGCACATGCTCGTGT-CCCTAGCCGTGTGGTTTTTATACCTCAAACAGTGAGT
* * * *
14500413 TACACAGCCTGGGCACACGCTTGTGTCCCTGGCCGTGTGGTTTTTATACCTCAAACAGTGAGT
1 TACACGGCCTGGGCACATGCTCGTGTCCCTAGCCGTGTGGTTTTTATACCTCAAACAGTGAGT
* * * * * *
14500476 TGCATGGCCTGGGCACATGCCCGTGTCCCTAGCCATGTGGTTTTTGTA-CTACAAAAAGTGAGT
1 TACACGGCCTGGGCACATGCTCGTGTCCCTAGCCGTGTGGTTTTTATACCT-CAAACAGTGAGT
* *
14500539 TATACGGCCTGGGCAAATGCTCGTGTCCCTAGCCG
1 TACACGGCCTGGGCACATGCTCGTGTCCCTAGCCG
14500574 AATGAACCAT
Statistics
Matches: 136, Mismatches: 23, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
62 21 0.15
63 115 0.85
ACGTcount: A:0.20, C:0.27, G:0.26, T:0.26
Consensus pattern (63 bp):
TACACGGCCTGGGCACATGCTCGTGTCCCTAGCCGTGTGGTTTTTATACCTCAAACAGTGAGT
Found at i:14501261 original size:23 final size:22
Alignment explanation
Indices: 14501235--14501286 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
14501225 AAAGGATAGA
*
14501235 AAAAGAATAAAAAAAATAAAGAG
1 AAAAGAAGAAAAAAAATAAAG-G
* * *
14501258 AAAAGAAGGAAAAATATAGAGG
1 AAAAGAAGAAAAAAAATAAAGG
14501280 AAAAGAA
1 AAAAGAA
14501287 ATATGGAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
22 8 0.32
23 17 0.68
ACGTcount: A:0.73, C:0.00, G:0.19, T:0.08
Consensus pattern (22 bp):
AAAAGAAGAAAAAAAATAAAGG
Found at i:14501272 original size:21 final size:22
Alignment explanation
Indices: 14501246--14501286 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
14501236 AAAGAATAAA
14501246 AAAAATAAAGA-GAAAAGAAGG
1 AAAAATAAAGAGGAAAAGAAGG
*
14501267 AAAAATATAGAGGAAAAGAA
1 AAAAATAAAGAGGAAAAGAA
14501287 ATATGGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.71, C:0.00, G:0.22, T:0.07
Consensus pattern (22 bp):
AAAAATAAAGAGGAAAAGAAGG
Found at i:14501323 original size:40 final size:40
Alignment explanation
Indices: 14501279--14501358 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
14501269 AAATATAGAG
*
14501279 GAAAAGAAATATGGAAAAATAACTAACGTTAATTATTAAT
1 GAAAAGAAATATGGAAAAAGAACTAACGTTAATTATTAAT
*
14501319 GAAAAGAAATATGGAAAAAGAACTAAGGTTAATTATTAAT
1 GAAAAGAAATATGGAAAAAGAACTAACGTTAATTATTAAT
14501359 TAACTTCCAC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.55, C:0.04, G:0.15, T:0.26
Consensus pattern (40 bp):
GAAAAGAAATATGGAAAAAGAACTAACGTTAATTATTAAT
Found at i:14504667 original size:27 final size:27
Alignment explanation
Indices: 14504602--14504699 Score: 115
Period size: 27 Copynumber: 3.5 Consensus size: 27
14504592 CATGAGATTG
* * *
14504602 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTAT-TA
*
14504631 GCACTAAGTGTGCGAGTTTGATTATTA
1 GCACTAAGTGTGCGAGTTAGATTATTA
* *
14504658 GCACTAAGTGTGCGAGTTCGACTATTAA
1 GCACTAAGTGTGCGAGTTAGATTATT-A
14504686 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
14504700 GGCTTAATAT
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
27 26 0.42
28 19 0.31
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGTTAGATTATTA
Found at i:14511053 original size:20 final size:20
Alignment explanation
Indices: 14511022--14511100 Score: 77
Period size: 20 Copynumber: 4.0 Consensus size: 20
14511012 ATTGCTGTGA
*
14511022 TACTTATGGCTTTGTGCCAC
1 TACTGATGGCTTTGTGCCAC
* * *
14511042 TATTGGTGGCTTTGTGCCGC
1 TACTGATGGCTTTGTGCCAC
* * *
14511062 TACTGATGGCTTCGAGCCGC
1 TACTGATGGCTTTGTGCCAC
* *
14511082 TACTCATGGATTTGTGCCA
1 TACTGATGGCTTTGTGCCA
14511101 TATACTAATA
Statistics
Matches: 46, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.14, C:0.24, G:0.27, T:0.35
Consensus pattern (20 bp):
TACTGATGGCTTTGTGCCAC
Found at i:14511157 original size:26 final size:25
Alignment explanation
Indices: 14511109--14511157 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
14511099 CATATACTAA
* *
14511109 TACTGGCAGCTTGCTGTGTTATTGT
1 TACTGGCAGCTTGCTGCGATATTGT
14511134 TACTGGCAGCTTTGCTGCGATATT
1 TACTGGCAGC-TTGCTGCGATATT
14511158 TTTGTGTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.14, C:0.18, G:0.27, T:0.41
Consensus pattern (25 bp):
TACTGGCAGCTTGCTGCGATATTGT
Found at i:14514176 original size:39 final size:40
Alignment explanation
Indices: 14514082--14514262 Score: 171
Period size: 40 Copynumber: 4.6 Consensus size: 40
14514072 AATGATGTCT
*
14514082 GGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT-TCC
* *
14514121 GGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAATTCC
* *
14514161 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCC
* *
14514200 GGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-TCC
* *
14514240 GGACTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
14514263 AACGAGGAGC
Statistics
Matches: 119, Mismatches: 14, Indels: 17
0.79 0.09 0.11
Matches are distributed among these distances:
39 49 0.41
40 58 0.49
41 11 0.09
42 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCC
Found at i:14514284 original size:79 final size:79
Alignment explanation
Indices: 14514133--14514295 Score: 181
Period size: 79 Copynumber: 2.1 Consensus size: 79
14514123 ACTAAGATCT
* * ** *
14514133 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGATACTAATACCGGACTAAGCCCGAAGGCATTTGAACGAGTGACTAAAT
*
14514198 CCGGGTTAAGTCCC
66 CCGGGTTAAATCCC
*
14514212 GAAGGCATTTGTGCGA-ATTACT-ATAACCGGACTATGTCCCGAAGGCATTTGAACGAG-GAGCT
1 GAAGGCATTTGTGCGAGA-TACTAAT-ACCGGACTAAG-CCCGAAGGCATTTGAACGAGTGA-CT
* *
14514274 ATATCC-GGTTAAATTCC
62 AAATCCGGGTTAAATCCC
14514291 GAAGG
1 GAAGG
14514296 TACGTGATTT
Statistics
Matches: 71, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
78 3 0.04
79 43 0.61
80 25 0.35
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGATACTAATACCGGACTAAGCCCGAAGGCATTTGAACGAGTGACTAAAT
CCGGGTTAAATCCC
Found at i:14521222 original size:34 final size:33
Alignment explanation
Indices: 14521145--14521225 Score: 99
Period size: 34 Copynumber: 2.4 Consensus size: 33
14521135 CTGGTTTGCA
* *
14521145 TACTGTACTGAAATGGGCTGAGGCCCAGACTGC
1 TACTGTACTGAAATGGGCTCAGGCCCAGACAGC
* * *
14521178 CATTGATACTGAAATGGGCTCAGGCCCAGACAGT
1 TACTG-TACTGAAATGGGCTCAGGCCCAGACAGC
14521212 TACTGCTACTGAAA
1 TACTG-TACTGAAA
14521226 AAGGGGCTAA
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
33 3 0.08
34 36 0.92
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.22
Consensus pattern (33 bp):
TACTGTACTGAAATGGGCTCAGGCCCAGACAGC
Found at i:14525971 original size:47 final size:47
Alignment explanation
Indices: 14525900--14526028 Score: 156
Period size: 47 Copynumber: 2.7 Consensus size: 47
14525890 AGATATGTGT
**
14525900 GCCAGTGTAAGACATGTCTGGGACATGCATTGGCCACAT-A-ATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATTGGCCA-ATGAGACAAGA
* *
14525946 GCCAGTGTAAGACCATGTCTGGGACATGGCATTGG-CATTGAGACAAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCAATGAGACAAGA
* *
14525994 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC
1 GCCAGTGTAAGACATGTCTGGGACATGCATTGGCC
14526029 TCGAGATGTT
Statistics
Matches: 72, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
46 19 0.26
47 32 0.44
48 21 0.29
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.22
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATTGGCCAATGAGACAAGA
Found at i:14527482 original size:103 final size:104
Alignment explanation
Indices: 14527303--14527555 Score: 393
Period size: 103 Copynumber: 2.4 Consensus size: 104
14527293 AACCGTTATT
* * * * *
14527303 GGTGGATCTCGCACTTAGCACCACCACTTAATCGAGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
14527368 ATCAACACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAACACATAGCAACCCCCTTTCACATTTCAAAGATAC
14527406 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
*
14527470 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAACACATAGCAACCCCCTTTCACATTTCAAAGATAC
*
14527510 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCAC
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCAC
14527556 ACATCAACCC
Statistics
Matches: 137, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
102 1 0.01
103 80 0.58
104 55 0.40
105 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAACACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:14527929 original size:30 final size:29
Alignment explanation
Indices: 14527895--14527959 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
14527885 TAATCCACCA
14527895 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
14527925 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
14527955 CCCAA
1 CCCAA
14527960 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:14527933 original size:31 final size:30
Alignment explanation
Indices: 14527902--14527959 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
14527892 CCACCCAACT
14527902 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
14527932 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
14527960 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:14534884 original size:27 final size:28
Alignment explanation
Indices: 14534853--14534906 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 28
14534843 CCACTTAATC
*
14534853 GGGGAATCAGCACTTAGCAA-CCCCTTG
1 GGGGAATCAGCACATAGCAAGCCCCTTG
14534880 GGGGAATCAGCACATAGCAAGCCCCTT
1 GGGGAATCAGCACATAGCAAGCCCCTT
14534907 TTTATTTCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 19 0.76
28 6 0.24
ACGTcount: A:0.28, C:0.30, G:0.26, T:0.17
Consensus pattern (28 bp):
GGGGAATCAGCACATAGCAAGCCCCTTG
Found at i:14534999 original size:103 final size:104
Alignment explanation
Indices: 14534820--14535084 Score: 408
Period size: 103 Copynumber: 2.6 Consensus size: 104
14534810 AACCGTTATT
* * * *
14534820 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
* ** *
14534885 ATCAGCACATAGCAAGCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
14534923 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
14534987 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
14535027 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
14535085 TTATGTACAA
Statistics
Matches: 148, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
102 1 0.01
103 81 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:14537219 original size:18 final size:16
Alignment explanation
Indices: 14537188--14537230 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 16
14537178 TCTTATTTAA
14537188 ATTAAATTAGAGTTCT
1 ATTAAATTAGAGTTCT
*
14537204 ATTATAATTAAGAGTTTT
1 ATTA-AATT-AGAGTTCT
14537222 ATTTAAATT
1 A-TTAAATT
14537231 TATTTAACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 4 0.17
17 4 0.17
18 12 0.52
19 3 0.13
ACGTcount: A:0.40, C:0.02, G:0.09, T:0.49
Consensus pattern (16 bp):
ATTAAATTAGAGTTCT
Found at i:14539875 original size:181 final size:182
Alignment explanation
Indices: 14539571--14539937 Score: 576
Period size: 181 Copynumber: 2.0 Consensus size: 182
14539561 GAGGCTATCT
* * * * *
14539571 CTTTTCATGCAAAAATAAATCAGAATCGGATTTTTTTTGTGGCACGGGCACGCCTTGTGAAATTT
1 CTTTTCATGCAAAAATAAATCAAAATCGGATTTCTTTTGTGGCACGAGCACACCTTGTAAAATTT
14539636 CAGTGATGCCATTTGTTGAAACATACACCTAGGACCGAACCAACCAAAACCAACCCGAACTACCC
66 CAGTGATGCCATTTGTTGAAACATACACCTAGGACCGAACCAACCAAAACCAACCCGAACTACCC
* * *
14539701 AAACCACCCTCTGCTGAATTAAACATACA-TGGGAGTACACTTGACCCTTCC
131 AAACCACCCTCTACCGAATTAAACATACACGGGGAGTACACTTGACCCTTCC
*
14539752 CTTTTCATGCAAAAATAAATCAAAATGGGATTTCTTTTGTAGG-ACGAGCACACCTTGTAAAATT
1 CTTTTCATGCAAAAATAAATCAAAATCGGATTTCTTTTGT-GGCACGAGCACACCTTGTAAAATT
* ***
14539816 TCAGTGCTGCCATTTGTTGAAACATACACCTAGGACCGAACCAACCAGGTCCAACCCGAACTACC
65 TCAGTGATGCCATTTGTTGAAACATACACCTAGGACCGAACCAACCAAAACCAACCCGAACTACC
* *
14539881 CAAACCACCCTCTACCGAATTAAACATACACGGGGAGTACACTTGATCCTTCT
130 CAAACCACCCTCTACCGAATTAAACATACACGGGGAGTACACTTGACCCTTCC
14539934 CTTT
1 CTTT
14539938 CTTATTGATT
Statistics
Matches: 169, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
181 144 0.85
182 25 0.15
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (182 bp):
CTTTTCATGCAAAAATAAATCAAAATCGGATTTCTTTTGTGGCACGAGCACACCTTGTAAAATTT
CAGTGATGCCATTTGTTGAAACATACACCTAGGACCGAACCAACCAAAACCAACCCGAACTACCC
AAACCACCCTCTACCGAATTAAACATACACGGGGAGTACACTTGACCCTTCC
Found at i:14540843 original size:33 final size:33
Alignment explanation
Indices: 14540801--14540868 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
14540791 AATCAATTAA
14540801 TTATTGAATTAATTCCTGCTGAATTGGTGAATT
1 TTATTGAATTAATTCCTGCTGAATTGGTGAATT
*
14540834 TTATTGAATTAATTTCTGCTGAATTGGTGAATT
1 TTATTGAATTAATTCCTGCTGAATTGGTGAATT
14540867 TT
1 TT
14540869 TGTTTAAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.26, C:0.07, G:0.18, T:0.49
Consensus pattern (33 bp):
TTATTGAATTAATTCCTGCTGAATTGGTGAATT
Found at i:14553048 original size:12 final size:12
Alignment explanation
Indices: 14553031--14553056 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14553021 TAAATTAAAA
14553031 AAGATTTTATTC
1 AAGATTTTATTC
14553043 AAGATTTTATTC
1 AAGATTTTATTC
14553055 AA
1 AA
14553057 TGGCAGGCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (12 bp):
AAGATTTTATTC
Found at i:14555804 original size:16 final size:18
Alignment explanation
Indices: 14555778--14555812 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
14555768 CCTTGTGATA
14555778 TCCATAATCTTA-TAATT
1 TCCATAATCTTATTAATT
14555795 TCCA-AATCTTATTAATT
1 TCCATAATCTTATTAATT
14555812 T
1 T
14555813 TGAGGTAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (18 bp):
TCCATAATCTTATTAATT
Found at i:14556298 original size:14 final size:14
Alignment explanation
Indices: 14556279--14556307 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
14556269 AAACCATCTC
14556279 TCTTTTTCTTTTTT
1 TCTTTTTCTTTTTT
14556293 TCTTTTTCTTTTTT
1 TCTTTTTCTTTTTT
14556307 T
1 T
14556308 TTTAAATGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (14 bp):
TCTTTTTCTTTTTT
Found at i:14559225 original size:23 final size:23
Alignment explanation
Indices: 14559180--14559225 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
14559170 TACGAGAGTG
*
14559180 AAGAAACAAACAGAATTAAAAAC
1 AAGAAACAAACAGAATAAAAAAC
*
14559203 AAGAACCAAACA-AATAAATAAAC
1 AAGAAACAAACAGAATAAA-AAAC
14559226 TGAAATTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.70, C:0.15, G:0.07, T:0.09
Consensus pattern (23 bp):
AAGAAACAAACAGAATAAAAAAC
Found at i:14567794 original size:33 final size:34
Alignment explanation
Indices: 14567732--14567797 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 34
14567722 CAGTACTAGT
14567732 ATGCATTAGGGCCTTAACCCATCACAGTATCAGC
1 ATGCATTAGGGCCTTAACCCATCACAGTATCAGC
* *
14567766 ATGCATTAGGGCCTT-GCCCATCATAGTATCAG
1 ATGCATTAGGGCCTTAACCCATCACAGTATCAG
14567798 TAGCAGTCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 15 0.50
34 15 0.50
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (34 bp):
ATGCATTAGGGCCTTAACCCATCACAGTATCAGC
Found at i:14571416 original size:7 final size:6
Alignment explanation
Indices: 14571395--14571436 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
14571385 GAAAAATTTG
14571395 TTATAA TTATAA TTATTAA TTA-AA TT-TAA TTATAA TT-TAA TT
1 TTATAA TTATAA TTA-TAA TTATAA TTATAA TTATAA TTATAA TT
14571437 TTGACATTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
5 13 0.39
6 14 0.42
7 6 0.18
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (6 bp):
TTATAA
Found at i:14571426 original size:17 final size:16
Alignment explanation
Indices: 14571399--14571437 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 16
14571389 AATTTGTTAT
14571399 AATTATAATTATTAATTA
1 AATT-TAATTA-TAATTA
*
14571417 AATTTAATTATAATTT
1 AATTTAATTATAATTA
14571433 AATTT
1 AATTT
14571438 TGACATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 10 0.50
17 6 0.30
18 4 0.20
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
AATTTAATTATAATTA
Found at i:14572222 original size:23 final size:22
Alignment explanation
Indices: 14572189--14572240 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
14572179 TAATTAGCGT
* *
14572189 AAATATATATTTGA-AATTGTAA
1 AAATATATATTTAATAAAT-TAA
14572211 AAATATATTATTTAATAAATTAA
1 AAATATA-TATTTAATAAATTAA
14572234 AAATATA
1 AAATATA
14572241 AAATCACATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 7 0.27
23 16 0.62
24 3 0.12
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (22 bp):
AAATATATATTTAATAAATTAA
Found at i:14581662 original size:24 final size:24
Alignment explanation
Indices: 14581630--14581677 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
14581620 TAATGCTTAG
14581630 TAAGTTCGTATAACAAGAAATTAA
1 TAAGTTCGTATAACAAGAAATTAA
*
14581654 TAAGTTCGTATAACGAGAAATTAA
1 TAAGTTCGTATAACAAGAAATTAA
14581678 CTTATCATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.48, C:0.08, G:0.15, T:0.29
Consensus pattern (24 bp):
TAAGTTCGTATAACAAGAAATTAA
Found at i:14581988 original size:19 final size:19
Alignment explanation
Indices: 14581964--14582013 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
14581954 AAACTGTAAC
14581964 CCTTCAATTCATGTATTAT
1 CCTTCAATTCATGTATTAT
14581983 CCTTCAATTCATGTATTAT
1 CCTTCAATTCATGTATTAT
*
14582002 CCGTCAATTCAT
1 CCTTCAATTCAT
14582014 ATATAGGAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (19 bp):
CCTTCAATTCATGTATTAT
Found at i:14582134 original size:24 final size:24
Alignment explanation
Indices: 14582107--14582209 Score: 82
Period size: 25 Copynumber: 4.2 Consensus size: 24
14582097 AGTTCTAGCA
* *
14582107 AGCCAATATCGGGAAGCTCCAGAG
1 AGCCATTATCGGGAAGCTCCAAAG
* *
14582131 AGCCATTAAC-GGAAGCTCAAAAG
1 AGCCATTATCGGGAAGCTCCAAAG
* *
14582154 AGCTAGTTATCGGAAAGCTCCAAAG
1 AGCCA-TTATCGGGAAGCTCCAAAG
* * * * *
14582179 AACAAATTATTGGGAAGCTTCGAAG
1 AGC-CATTATCGGGAAGCTCCAAAG
14582204 AGCCAT
1 AGCCAT
14582210 AAAAGGGAAG
Statistics
Matches: 60, Mismatches: 16, Indels: 6
0.73 0.20 0.07
Matches are distributed among these distances:
23 15 0.25
24 14 0.23
25 30 0.50
26 1 0.02
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.17
Consensus pattern (24 bp):
AGCCATTATCGGGAAGCTCCAAAG
Found at i:14582171 original size:25 final size:23
Alignment explanation
Indices: 14582107--14582179 Score: 74
Period size: 23 Copynumber: 3.0 Consensus size: 23
14582097 AGTTCTAGCA
* *
14582107 AGCCAATATCGGGAAGCTCCAGAG
1 AGCCATTATC-GGAAGCTCCAAAG
* *
14582131 AGCCATTAACGGAAGCTCAAAAG
1 AGCCATTATCGGAAGCTCCAAAG
*
14582154 AGCTAGTTATCGGAAAGCTCCAAAG
1 AGCCA-TTATCGG-AAGCTCCAAAG
14582179 A
1 A
14582180 ACAAATTATT
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
23 15 0.38
24 14 0.35
25 11 0.28
ACGTcount: A:0.38, C:0.22, G:0.25, T:0.15
Consensus pattern (23 bp):
AGCCATTATCGGAAGCTCCAAAG
Found at i:14584615 original size:23 final size:23
Alignment explanation
Indices: 14584589--14584633 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
14584579 AACCCCGGTA
14584589 CAAAGTCCATAATAACTCTTTCT
1 CAAAGTCCATAATAACTCTTTCT
*
14584612 CAAAGTCCATAATACCTCTTTC
1 CAAAGTCCATAATAACTCTTTC
14584634 CCATTTCCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.33, C:0.29, G:0.04, T:0.33
Consensus pattern (23 bp):
CAAAGTCCATAATAACTCTTTCT
Found at i:14589849 original size:39 final size:40
Alignment explanation
Indices: 14589645--14589867 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 40
14589635 TTGAATGCTG
* * * * * *
14589645 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* * * *
14589685 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
14589725 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
14589765 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
14589805 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
14589844 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
14589868 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:14589887 original size:79 final size:80
Alignment explanation
Indices: 14589720--14589902 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
14589710 GTGCGAGATA
* * *
14589720 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
14589785 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
14589800 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
14589864 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
14589879 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
14589903 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:14591511 original size:80 final size:80
Alignment explanation
Indices: 14591413--14591569 Score: 280
Period size: 80 Copynumber: 2.0 Consensus size: 80
14591403 CCGAGAAGTA
14591413 GCTGATGATCTTGAGAGTGTAGCGCCTGCTCCCGCG-CAAGGGACAGCGCCGGCGGACTCTCAAC
1 GCTGATGATCTTGAGAGTGTAGCGCCTGCTCCCG-GACAAGGGACAGCGCCGGCGGACTCTCAAC
14591477 CTAATACTAGTAACCC
65 CTAATACTAGTAACCC
*
14591493 GCTGATGATCTTGAGAGTGTAGCGCCTGCTCCCGGACAAGGGACAGTGCCGGCGGACTCTCAACC
1 GCTGATGATCTTGAGAGTGTAGCGCCTGCTCCCGGACAAGGGACAGCGCCGGCGGACTCTCAACC
*
14591558 TAATGCTAGTAA
66 TAATACTAGTAA
14591570 TCAGAATGAT
Statistics
Matches: 74, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
79 1 0.01
80 73 0.99
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.20
Consensus pattern (80 bp):
GCTGATGATCTTGAGAGTGTAGCGCCTGCTCCCGGACAAGGGACAGCGCCGGCGGACTCTCAACC
TAATACTAGTAACCC
Found at i:14597718 original size:40 final size:39
Alignment explanation
Indices: 14597687--14597896 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
14597677 GGACTAAGAT
* *
14597687 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
14597727 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
14597767 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
14597807 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
14597847 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
14597886 CCGAAGGCATT
1 CCGAAGGCATT
14597897 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:14597850 original size:120 final size:120
Alignment explanation
Indices: 14597634--14597896 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
14597624 TTGAATGCTG
* *
14597634 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
14597698 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
14597754 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
14597817 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
14597873 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
14597897 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:14597916 original size:79 final size:80
Alignment explanation
Indices: 14597635--14597931 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
14597625 TGAATGCTGT
* ** * * * **
14597635 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
14597698 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
14597715 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
14597779 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
14597795 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
14597859 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
14597874 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
14597932 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:14604029 original size:18 final size:18
Alignment explanation
Indices: 14603994--14604031 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
14603984 CCACTCGATC
14603994 TTCATCTAAATTAATAAT
1 TTCATCTAAATTAATAAT
*
14604012 TTCAT-TAAATATATTAAT
1 TTCATCTAAAT-TAATAAT
14604030 TT
1 TT
14604032 AGAAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (18 bp):
TTCATCTAAATTAATAAT
Found at i:14631174 original size:79 final size:82
Alignment explanation
Indices: 14631063--14631247 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
14631053 GCTACTCGTT
* * *
14631063 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
14631126 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
14631143 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
14631206 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
14631223 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
14631248 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:14631247 original size:40 final size:40
Alignment explanation
Indices: 14631044--14631247 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
14631034 CGGAATTTAA
** *
14631044 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
14631084 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
14631124 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
14631163 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
14631203 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
14631243 CCGGA
1 CCGGA
14631248 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:14639138 original size:40 final size:39
Alignment explanation
Indices: 14639040--14639159 Score: 177
Period size: 39 Copynumber: 3.1 Consensus size: 39
14639030 TACTCGTTCA
* * *
14639040 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCAC
*
14639079 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCAC
* *
14639118 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCAC
14639158 AA
1 AA
14639160 AGGCTTTGGA
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 37 0.51
40 36 0.49
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCAC
Found at i:14639212 original size:67 final size:67
Alignment explanation
Indices: 14639100--14639227 Score: 220
Period size: 67 Copynumber: 1.9 Consensus size: 67
14639090 GACATAACCC
* * *
14639100 GGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCT
1 GGATTTAATAACTCGCACAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACAAAGGCT
14639165 TT
66 TT
*
14639167 GGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACAAA
1 GGATTTAATAACTCGCACAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACAAA
14639228 TGCCTTCGGA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.27
Consensus pattern (67 bp):
GGATTTAATAACTCGCACAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACAAAGGCT
TT
Found at i:14639223 original size:40 final size:40
Alignment explanation
Indices: 14639168--14639289 Score: 149
Period size: 40 Copynumber: 3.0 Consensus size: 40
14639158 AAAGGCTTTG
*
14639168 GATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
1 GATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCA
* *
14639208 GATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 GATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCA
* * * *
14639248 GATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCA
1 GATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCA
14639288 GA
1 GA
14639290 CATCATTCAA
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
39 3 0.04
40 56 0.80
41 11 0.16
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.25
Consensus pattern (40 bp):
GATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCA
Found at i:14641927 original size:69 final size:69
Alignment explanation
Indices: 14641812--14641949 Score: 258
Period size: 69 Copynumber: 2.0 Consensus size: 69
14641802 ATCCTCAAGT
14641812 ATCTGAATTATCCGCTCGGATTGACCATCGGTTTGGGGGTGAAAAGCAGTGCTAAAATGCAGCTT
1 ATCTGAATTATCCGCTCGGATTGACCATCGGTTTGGGGGTGAAAAGCAGTGCTAAAATGCAGCTT
14641877 GGTA
66 GGTA
* *
14641881 ATCTGAATTATCCTCTCGGATTGACCATCGGTTTGGGGGTGGAAAGCAGTGCTAAAATGCAGCTT
1 ATCTGAATTATCCGCTCGGATTGACCATCGGTTTGGGGGTGAAAAGCAGTGCTAAAATGCAGCTT
14641946 GGTA
66 GGTA
14641950 CCCAGAGCTT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.28
Consensus pattern (69 bp):
ATCTGAATTATCCGCTCGGATTGACCATCGGTTTGGGGGTGAAAAGCAGTGCTAAAATGCAGCTT
GGTA
Found at i:14647393 original size:40 final size:40
Alignment explanation
Indices: 14647302--14647471 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
14647292 TCCTCGTTCA
* * * * *
14647302 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
14647341 CATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
14647381 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
14647421 AATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
14647461 AAGGCCTTCGG
1 AATGCCTTCGG
14647472 ATCTTAGTCC
Statistics
Matches: 112, Mismatches: 18, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 32 0.29
40 80 0.71
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:14655271 original size:39 final size:40
Alignment explanation
Indices: 14655228--14655395 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
14655218 CTCGTTCAAG
* * * *
14655228 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
14655267 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
14655307 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
14655347 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
14655387 TGCCTTCGG
1 TGCCTTCGG
14655396 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:14655408 original size:40 final size:40
Alignment explanation
Indices: 14655265--14655395 Score: 201
Period size: 40 Copynumber: 3.3 Consensus size: 40
14655255 TAACTCATAC
* *
14655265 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
14655305 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
14655345 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
14655385 AATGCCTTCGG
1 AATGCCTTCGG
14655396 ATCTTAGTCC
Statistics
Matches: 82, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 3 0.04
40 79 0.96
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:14655408 original size:80 final size:80
Alignment explanation
Indices: 14655228--14655448 Score: 229
Period size: 80 Copynumber: 2.8 Consensus size: 80
14655218 CTCGTTCAAG
* * * * * * * *
14655228 TGCCTTCGGGACATAGCCCGGTTATAGTAACTCA-TACAATGCCTTCGGGACTTAACCCGGATTT
1 TGCCTTCGGGACTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGATAT
*
14655292 TAAAACTCGCACGAA
66 TAAAACTCGCACAAA
*
14655307 TGCCTTCGGGACTTAACCCGGA-ATTAGT-A-TCTCGCACAAAGGCCTTCGGGACTTAACCCGGA
1 TGCCTTCGGGACTTAACCCGGATA-TAGTCACT-TAGCACAAA-GCCTTCGGGACTTAACCCGGA
14655369 -ATTAATAACTCGCACAAA
63 TATTAA-AACTCGCACAAA
** * *
14655387 TGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGAACTTAGCCCGGA
1 TGCCTTCGGGA-CTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
14655449 CAGCATTCAA
Statistics
Matches: 119, Mismatches: 14, Indels: 17
0.79 0.09 0.11
Matches are distributed among these distances:
77 1 0.01
78 2 0.02
79 34 0.29
80 71 0.60
81 10 0.08
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
TGCCTTCGGGACTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGATAT
TAAAACTCGCACAAA
Found at i:14657120 original size:14 final size:15
Alignment explanation
Indices: 14657101--14657130 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
14657091 ATATTTAACT
14657101 TGTTCTTAATT-TTG
1 TGTTCTTAATTCTTG
14657115 TGTTCTTAATTCTTG
1 TGTTCTTAATTCTTG
14657130 T
1 T
14657131 TTTGATATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.13, C:0.10, G:0.13, T:0.63
Consensus pattern (15 bp):
TGTTCTTAATTCTTG
Found at i:14663607 original size:49 final size:49
Alignment explanation
Indices: 14663552--14663779 Score: 267
Period size: 49 Copynumber: 4.6 Consensus size: 49
14663542 ATCTGGTACG
* *
14663552 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGATACA
* * ** **
14663601 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATTTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGATACA
* * * * * *
14663651 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGATACA
*
14663702 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGATACA
* * *
14663751 CATAGTAACCTACGCTTAGTACTACACAC
1 CATAGTAGCCTGCACTTAGTACTACACAC
14663780 ATGACCTCAC
Statistics
Matches: 150, Mismatches: 26, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
49 66 0.44
50 47 0.31
51 37 0.25
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGATACA
Found at i:14663727 original size:101 final size:98
Alignment explanation
Indices: 14663552--14663779 Score: 285
Period size: 101 Copynumber: 2.3 Consensus size: 98
14663542 ATCTGGTACG
* * *
14663552 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACT
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACAAATTATCCGGTACACATAGTAGCCTGCACT
* **
14663617 TAGTACTACACACGTGACCTAACCATTTGATACA
66 TAGTACTACACACGCGACC-AACCATCCGATACA
* * * *
14663651 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTACGCATAGTAGCCTGCA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGA-CAAA-TTATCCGGTACACATAGTAGCCTGCA
* **
14663716 CTTAGTACTACACATGCGACCAATTATCCGATACA
64 CTTAGTACTACACACGCGACCAACCATCCGATACA
* * *
14663751 CATAGTAACCTACGCTTAGTACTACACAC
1 CATAGTAGCCTGCACTTAGTACTACACAC
14663780 ATGACCTCAC
Statistics
Matches: 110, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
99 30 0.27
100 38 0.35
101 42 0.38
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (98 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACAAATTATCCGGTACACATAGTAGCCTGCACT
TAGTACTACACACGCGACCAACCATCCGATACA
Found at i:14664068 original size:28 final size:28
Alignment explanation
Indices: 14664011--14664065 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
14664001 AGGTACAACC
* * *
14664011 CATGTAATAGTAATTTTAACATTTAATT
1 CATGTAACAATAATTTTAACATTCAATT
*
14664039 CATGTAACAATAATTTT-CCATTCAATT
1 CATGTAACAATAATTTTAACATTCAATT
14664066 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 8 0.35
28 15 0.65
ACGTcount: A:0.38, C:0.13, G:0.05, T:0.44
Consensus pattern (28 bp):
CATGTAACAATAATTTTAACATTCAATT
Found at i:14668350 original size:33 final size:33
Alignment explanation
Indices: 14668313--14668378 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
14668303 GAATAAATTA
*
14668313 CTCCCCCT-TAATAAAATTCATTTTCCATTTAAG
1 CTCCCCCTAT-ATAAAATTCATTTTCAATTTAAG
*
14668346 CTCCCCCTATATAAAATTCGTTTTCAATTTAAG
1 CTCCCCCTATATAAAATTCATTTTCAATTTAAG
14668379 GCTTAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.30, C:0.26, G:0.05, T:0.39
Consensus pattern (33 bp):
CTCCCCCTATATAAAATTCATTTTCAATTTAAG
Found at i:14670647 original size:38 final size:39
Alignment explanation
Indices: 14670582--14670658 Score: 120
Period size: 38 Copynumber: 2.0 Consensus size: 39
14670572 TTTAACCTTA
14670582 CAACATCCCTTAAGATTTCTACCCAAAATCTTAAGATTG
1 CAACATCCCTTAAGATTTCTACCCAAAATCTTAAGATTG
* * *
14670621 CAAC-TCCCTTAAGGTTTTTACTCAAAATCTTAAGATTG
1 CAACATCCCTTAAGATTTCTACCCAAAATCTTAAGATTG
14670659 AATTCTCTCA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
38 31 0.89
39 4 0.11
ACGTcount: A:0.34, C:0.23, G:0.09, T:0.34
Consensus pattern (39 bp):
CAACATCCCTTAAGATTTCTACCCAAAATCTTAAGATTG
Found at i:14671096 original size:20 final size:19
Alignment explanation
Indices: 14671073--14671117 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 19
14671063 AATTATCGAA
14671073 ACTTGGTAAAAGGTATCTAT
1 ACTTGGT-AAAGGTATCTAT
*
14671093 ACTTTTTGTAAAGGTATCTAT
1 AC--TTGGTAAAGGTATCTAT
14671114 ACTT
1 ACTT
14671118 TTTGTGTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
19 2 0.09
20 2 0.09
21 14 0.64
22 4 0.18
ACGTcount: A:0.31, C:0.11, G:0.16, T:0.42
Consensus pattern (19 bp):
ACTTGGTAAAGGTATCTAT
Found at i:14671107 original size:21 final size:21
Alignment explanation
Indices: 14671081--14671122 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
14671071 AAACTTGGTA
14671081 AAAGGTATCTATACTTTTTGT
1 AAAGGTATCTATACTTTTTGT
14671102 AAAGGTATCTATACTTTTTGT
1 AAAGGTATCTATACTTTTTGT
14671123 GTAAATTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.48
Consensus pattern (21 bp):
AAAGGTATCTATACTTTTTGT
Found at i:14671361 original size:22 final size:24
Alignment explanation
Indices: 14671333--14671376 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
14671323 ATTTTGTTCA
14671333 ACTTTAACTT-TTAT-TCAAAAGC
1 ACTTTAACTTCTTATATCAAAAGC
*
14671355 ACTTTAATTTCTTATATCAAAA
1 ACTTTAACTTCTTATATCAAAA
14671377 CATATTATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.43
Consensus pattern (24 bp):
ACTTTAACTTCTTATATCAAAAGC
Found at i:14674257 original size:17 final size:18
Alignment explanation
Indices: 14674235--14674269 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
14674225 CTAATTAGAC
14674235 CGTGTGGG-CCACACGGG
1 CGTGTGGGCCCACACGGG
14674252 CGTGTGGGCCCACACGGG
1 CGTGTGGGCCCACACGGG
14674270 TGAACCACGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.11, C:0.31, G:0.46, T:0.11
Consensus pattern (18 bp):
CGTGTGGGCCCACACGGG
Found at i:14675952 original size:41 final size:45
Alignment explanation
Indices: 14675847--14675954 Score: 109
Period size: 45 Copynumber: 2.5 Consensus size: 45
14675837 ATGTGTTTTT
* * * *
14675847 GTGTAAGACCAC-ATGTGGGACGTTGGCATCGATATATGTGGTTAC
1 GTGTAAGACC-CTATCTGGGACATCGGCATCGATATATGTGATTAC
* *
14675892 GTGTAAGACCATGTCTGGGACATCGGCATC-ATAT-T-TGATT-C
1 GTGTAAGACCCTATCTGGGACATCGGCATCGATATATGTGATTAC
*
14675933 GTGTAAGACCCTATTTGGGACA
1 GTGTAAGACCCTATCTGGGACA
14675955 GTGGTATTGA
Statistics
Matches: 53, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
41 20 0.38
42 4 0.08
43 1 0.02
44 4 0.08
45 24 0.45
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (45 bp):
GTGTAAGACCCTATCTGGGACATCGGCATCGATATATGTGATTAC
Found at i:14685297 original size:33 final size:33
Alignment explanation
Indices: 14685247--14685346 Score: 173
Period size: 33 Copynumber: 3.0 Consensus size: 33
14685237 GGGGTGGGGT
*
14685247 TGGTGCTATGATGGAGGAAGTTTTCTGCAAGGC
1 TGGTGCTATGATAGAGGAAGTTTTCTGCAAGGC
* *
14685280 TGGTCCTATGATAGAGGAAGTTTTCTGCAAGGA
1 TGGTGCTATGATAGAGGAAGTTTTCTGCAAGGC
14685313 TGGTGCTATGATAGAGGAAGTTTTCTGCAAGGC
1 TGGTGCTATGATAGAGGAAGTTTTCTGCAAGGC
14685346 T
1 T
14685347 CTTAAGGCTG
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 62 1.00
ACGTcount: A:0.24, C:0.12, G:0.33, T:0.31
Consensus pattern (33 bp):
TGGTGCTATGATAGAGGAAGTTTTCTGCAAGGC
Found at i:14688961 original size:16 final size:16
Alignment explanation
Indices: 14688940--14688972 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
14688930 ACTTATGTCT
14688940 ATTAGAAGCCACCTAA
1 ATTAGAAGCCACCTAA
14688956 ATTAGAAGCCACCTAA
1 ATTAGAAGCCACCTAA
14688972 A
1 A
14688973 GATGATCGCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.24, G:0.12, T:0.18
Consensus pattern (16 bp):
ATTAGAAGCCACCTAA
Found at i:14692891 original size:85 final size:87
Alignment explanation
Indices: 14692729--14692896 Score: 218
Period size: 85 Copynumber: 2.0 Consensus size: 87
14692719 CCAGAATATG
* * * * * *
14692729 TTTTCGTGTAAGACCACGTCTGGGACGTTGGTATCGACTTTTGTTTTACGTGTAAGACCATGTTT
1 TTTTCGTGTAAGACCACGTCTGGGACGTTGGCAACGACTTTTGTATTACATGTAAGACAACGTTT
*
14692794 GGGACATTGGCATTGTATCTGA
66 GAGACATTGGCATTGTATCTGA
*
14692816 TTTT-GTGTAAGACC-CTGTCTGGGACAG-TGGCAACGATTTTTG-ATTACATGTAAGACAACGT
1 TTTTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCAACGACTTTTGTATTACATGTAAGACAACGT
14692877 TTGAGACATTGGCATTGTAT
64 TTGAGACATTGGCATTGTAT
14692897 AGGTTCTTTG
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
85 35 0.49
86 31 0.44
87 5 0.07
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (87 bp):
TTTTCGTGTAAGACCACGTCTGGGACGTTGGCAACGACTTTTGTATTACATGTAAGACAACGTTT
GAGACATTGGCATTGTATCTGA
Found at i:14700424 original size:42 final size:42
Alignment explanation
Indices: 14700359--14700485 Score: 130
Period size: 42 Copynumber: 3.0 Consensus size: 42
14700349 GACTTCTATT
* *
14700359 TTACGTGTAAGACCATGTGTGGGACATTGGCATCGTATCTGA
1 TTACGTGTAAGACCCTGTCTGGGACATTGGCATCGTATCTGA
* * * * *
14700401 TTTCGTGTAAGACCCTATCTGGGACAGTGGCATCGATGTTTGA
1 TTACGTGTAAGACCCTGTCTGGGACATTGGCATCG-TATCTGA
* * * *
14700444 TTACGTGAAAGACCAC-GTCTGGGACGTTGGCATTGTCTCTGA
1 TTACGTGTAAGACC-CTGTCTGGGACATTGGCATCGTATCTGA
14700486 GCTATCCGCT
Statistics
Matches: 68, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
42 35 0.51
43 32 0.47
44 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (42 bp):
TTACGTGTAAGACCCTGTCTGGGACATTGGCATCGTATCTGA
Found at i:14708126 original size:603 final size:602
Alignment explanation
Indices: 14706987--14708193 Score: 1820
Period size: 603 Copynumber: 2.0 Consensus size: 602
14706977 CGAGCAATCC
* *
14706987 CACACCTAAAACAACAATTAACACCACCAGTTTCAGTAATAATTAGTGAAATTTAACTAATAATC
1 CACACCTAAAACAACAATTAACACCACCAATTTCAATAATAATTAGTGAAATTTAACTAATAATC
* *
14707052 AACCGCAATCAAACTACAACAGCCCTACAAAAAAACACATCCTCACACTTTGAACGAACATATAC
66 AACCACAATCAAACTACAACAGCCCTACAAAAAAACACATCCTCACACTTTGAACAAACATATAC
* * * *
14707117 TATGCAAAACCTAAGGCATTGGACGAACAACCAACTGCTCTCGATTTTCACTTAACAATGTGCAA
131 TACGCAAAACCTAAGGCACTAGACGAACAACCAACTGCTCTCGATTTTCACCTAACAATGTGCAA
* * *
14707182 ACAATTTGATTAAACAACTAAAACCCTGATTTCACTGCAAGATCACAACACACTAGCCAAAAACA
196 ACAATTAGATTAAACAACTAAAACCCCGATTACACTGCAAGATCACAACACACTAGCCAAAAACA
*
14707247 AAAAGAAAAACCCAACCTTCCCAAATATCACAACTTACCAGATGACTCAATAGCAACAACAACCA
261 AAAACAAAAACCCAACCTTCCCAAATATCACAACTTACCAGATGACTCAATAGCAACAACAACCA
*
14707312 CAAAAAATCATGAGCAAAAGATCCAAGGAATTTAATCAAGATTCAATAGAAAAAAAAAGATTGAA
326 CAAAAAATCATGAACAAAAGATCCAAGGAATTTAATCAAGATTCAATAGAAAAAAAAAGATTGAA
* *
14707377 GAAAGAAAGAAAAGAACCAGAAAATCAAAGAATGGAACTGCTGGCACATGGGAAAAAACGACTTG
391 GAAAGAAAGAAAAGAACCAGAAAATCAAAGAATGGAACTACTGGCACATGGGAAAAAACGACGTG
*
14707442 AATAGTGGGGTCTCAGGGAAACAAACGTGAAGTTAATAGAGCTATTTTTGGGGAACAAGAAAAAT
456 AATAGTGGGGTCTCAGGGAAACAAACGTGAAGTTAATAGAGCTATTTTTGGGGAAAAAGAAAAAT
* *
14707507 ACTAAAGTCAAATAAATT-A-A-A-ACAAAAAAAAAGATCATGTTGAACAAACTTCTACAACTAA
521 ACTAAAGTCAAATAAATTAACACACACAAAAAAAAAGATCATGCTGAAAAAACTTCTACAACTAA
14707568 TCCAACTCATCAGAATT
586 TCCAACTCATCAGAATT
14707585 CACACCTAAAACAACAATTAACACCACCAATTTCAATAATAATTAGTGAAATTTAACTAATAATC
1 CACACCTAAAACAACAATTAACACCACCAATTTCAATAATAATTAGTGAAATTTAACTAATAATC
* * * * *
14707650 AACCACAA-CTTAACTACAATAGCCTTATAAAAAAACACATCCTCACACTTACCATTTAACAAAC
66 AACCACAATC-AAACTACAACAGCCCTACAAAAAAACACATCCTCACAC-T----TTGAACAAAC
** * **
14707714 A-ACTACTACGCAAAACCTAAGGTGCTAGAGGAACAACCAACTGCTCTCGATTTTCACCTAACTG
125 ATA-TACTACGCAAAACCTAAGGCACTAGACGAACAACCAACTGCTCTCGATTTTCACCTAACAA
* * *
14707778 TGTGCAAACAATTAGATTAAACAGCTAAAACCCCGATTACACTGCAAGATCACAACATAGTAGCC
189 TGTGCAAACAATTAGATTAAACAACTAAAACCCCGATTACACTGCAAGATCACAACACACTAGCC
*
14707843 -AAAACAAAAACAAGAACCCAACCTTCCCAAATATCACAACTTACCAGATGACTCAATAGCAACA
254 AAAAACAAAAACAAAAACCCAACCTTCCCAAATATCACAACTTACCAGATGACTCAATAGCAACA
* ** * *
14707907 ACGACCACAAAAAATTGTGAACAAAAGATCCAAGGAATTTTATCAAGATTCAATAGAAAAACAAA
319 ACAACCACAAAAAATCATGAACAAAAGATCCAAGGAATTTAATCAAGATTCAATAGAAAAAAAAA
* * * *
14707972 GATTGAAGAAAGAAAGAAAAATAATCA-AAGAATTAGAGAATGGAACTACTGGCACATGGGAAAA
384 GATTGAAGAAAGAAAG-AAAAGAACCAGAA-AATCAAAGAATGGAACTACTGGCACATGGGAAAA
* ** * * *
14708036 AACGACGTGAATAGTGGGGTTTTGGGGAAACAAATGTGATGTTAAT-GAAGTTATTTTTGGGGAA
447 AACGACGTGAATAGTGGGGTCTCAGGGAAACAAACGTGAAGTTAATAG-AGCTATTTTTGGGGAA
*
14708100 AAAGAAAAATACTAGAGTCAAATAAATTAACACACACAAAAAAAAAGATCATGCTGAAAAAACTT
511 AAAGAAAAATACTAAAGTCAAATAAATTAACACACACAAAAAAAAAGATCATGCTGAAAAAACTT
*
14708165 CTACAACTAATCCAACTCATCAGGATT
576 CTACAACTAATCCAACTCATCAGAATT
14708192 CA
1 CA
14708194 AAATTTCCCT
Statistics
Matches: 546, Mismatches: 49, Indels: 19
0.89 0.08 0.03
Matches are distributed among these distances:
597 1 0.00
598 104 0.19
599 1 0.00
602 141 0.26
603 240 0.44
604 1 0.00
605 1 0.00
606 1 0.00
607 56 0.10
ACGTcount: A:0.47, C:0.20, G:0.13, T:0.20
Consensus pattern (602 bp):
CACACCTAAAACAACAATTAACACCACCAATTTCAATAATAATTAGTGAAATTTAACTAATAATC
AACCACAATCAAACTACAACAGCCCTACAAAAAAACACATCCTCACACTTTGAACAAACATATAC
TACGCAAAACCTAAGGCACTAGACGAACAACCAACTGCTCTCGATTTTCACCTAACAATGTGCAA
ACAATTAGATTAAACAACTAAAACCCCGATTACACTGCAAGATCACAACACACTAGCCAAAAACA
AAAACAAAAACCCAACCTTCCCAAATATCACAACTTACCAGATGACTCAATAGCAACAACAACCA
CAAAAAATCATGAACAAAAGATCCAAGGAATTTAATCAAGATTCAATAGAAAAAAAAAGATTGAA
GAAAGAAAGAAAAGAACCAGAAAATCAAAGAATGGAACTACTGGCACATGGGAAAAAACGACGTG
AATAGTGGGGTCTCAGGGAAACAAACGTGAAGTTAATAGAGCTATTTTTGGGGAAAAAGAAAAAT
ACTAAAGTCAAATAAATTAACACACACAAAAAAAAAGATCATGCTGAAAAAACTTCTACAACTAA
TCCAACTCATCAGAATT
Found at i:14710219 original size:3 final size:3
Alignment explanation
Indices: 14710206--14710245 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
14710196 ATCGATATCA
*
14710206 CCT CTT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT C
1 CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT C
14710246 ATCTTCTTCT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35
Consensus pattern (3 bp):
CCT
Found at i:14712994 original size:38 final size:38
Alignment explanation
Indices: 14712952--14713025 Score: 148
Period size: 38 Copynumber: 1.9 Consensus size: 38
14712942 CTATTTGGTT
14712952 GAGCACTACCAACACTCGCGATAGAAGTGGTGTGAGTC
1 GAGCACTACCAACACTCGCGATAGAAGTGGTGTGAGTC
14712990 GAGCACTACCAACACTCGCGATAGAAGTGGTGTGAG
1 GAGCACTACCAACACTCGCGATAGAAGTGGTGTGAG
14713026 CTTTAGGCAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.30, C:0.23, G:0.30, T:0.18
Consensus pattern (38 bp):
GAGCACTACCAACACTCGCGATAGAAGTGGTGTGAGTC
Found at i:14715744 original size:48 final size:47
Alignment explanation
Indices: 14715677--14716238 Score: 495
Period size: 48 Copynumber: 11.6 Consensus size: 47
14715667 TAAATTGCCA
* * *
14715677 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATGTCGAGGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAT-GAGGCCG
* * * * * *
14715725 ATTCCATGTCCCAGACATGGTCTTACACTAGCTCTA-GTCTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC-ACATAT-GAGGCCG
* * * *
14715773 ATGCCATGTCCTAAACATGGTCTTACACTGGCTCTCATAAT-ATGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATGA-GGCCG
* *
14715821 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAT-GAGGCCG
* * * * * * * *
14715869 ATTCCATATCCCAGACATGGTCTTACACTAGCTCTA-GTCTCAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC-ACATAT-GAGGCCG
* * * * *
14715917 ATGCCATGTCCTAAACATGGTCTTACACTGGCTCTCATAATGTGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATGAGGCCG
* *
14715965 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTA-ATAATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC-ACAT-ATGAGGCCG
* *
14716013 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTA-ATAATGTGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC-ACAT-ATGAGGCCG
* * *
14716061 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATATAATATGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCA-CATAT--GA-GGCCG
* * *
14716114 ATGCCATGTCCCGGACATGGTCTTACACTGGCTCTCATAATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATGAGGCCG
* * * * *
14716162 ATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAT-GAGGCCG
* *
14716210 ATGCCATATCACAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
14716239 ATCACACATA
Statistics
Matches: 426, Mismatches: 69, Indels: 38
0.80 0.13 0.07
Matches are distributed among these distances:
47 4 0.01
48 368 0.86
49 7 0.02
50 7 0.02
51 7 0.02
52 1 0.00
53 32 0.08
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATGAGGCCG
Found at i:14715937 original size:144 final size:144
Alignment explanation
Indices: 14715677--14716238 Score: 690
Period size: 144 Copynumber: 3.9 Consensus size: 144
14715667 TAAATTGCCA
* * *
14715677 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCACAT-GTCGAGGCCAATTCCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAAT-GAGGCCAATGCCATGTCCCAGAC
14715741 ATGGTCTTACACTAGCTCTAGTCTCAATGCCGATGCCATGTCCTAAACATGGTCTTACACTGGCT
65 ATGGTCTTACACTAGCTCTAGTCTCAATGCCGATGCCATGTCCTAAACATGGTCTTACACTGGCT
14715806 CTCATAATATGGCTG
130 CTCATAATATGGCTG
* * *
14715821 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-GTCGAGGCCAATTCCATATCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAAT-GAGGCCAATGCCATGTCCCAGAC
*
14715885 ATGGTCTTACACTAGCTCTAGTCTCAATGCCAATGCCATGTCCTAAACATGGTCTTACACTGGCT
65 ATGGTCTTACACTAGCTCTAGTCTCAATGCCGATGCCATGTCCTAAACATGGTCTTACACTGGCT
*
14715950 CTCATAATGTGGCTG
130 CTCATAATATGGCTG
* * *
14715965 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTA-ATAATGTGGCCGATGCCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC-ACATAATGAGGCCAATGCCATGTCCCAGAC
* * * * * *
14716029 ATGGTCTTACACTGGCTCTA--AT-AATGTGGCTGATGCCATGTCCCAGACATGGTCTTACACTA
65 ATGGTCTTACACTAGCTCTAGTCTCAA--T-GCCGATGCCATGTCCTAAACATGGTCTTACACTG
*
14716091 GCTCTCATAATATAATATGGCCG
127 GCTCTC-----ATAATATGGCTG
* * * * *
14716114 ATGCCATGTCCCGGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAATGAGGCCAATGCCATGTCCCAGACA
* * * * * *
14716179 TGGTCTTACACTAGCAC-ACATATCAACGCCGATGCCATATCAC-AGACATGGTCTTACACT
66 TGGTCTTACACTAGCTCTA-GTCTCAATGCCGATGCCATGTC-CTAAACATGGTCTTACACT
14716239 ATCACACATA
Statistics
Matches: 374, Mismatches: 28, Indels: 27
0.87 0.07 0.06
Matches are distributed among these distances:
141 2 0.01
142 1 0.00
143 1 0.00
144 248 0.66
145 2 0.01
148 1 0.00
149 114 0.30
150 1 0.00
151 2 0.01
152 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (144 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAATGAGGCCAATGCCATGTCCCAGACA
TGGTCTTACACTAGCTCTAGTCTCAATGCCGATGCCATGTCCTAAACATGGTCTTACACTGGCTC
TCATAATATGGCTG
Found at i:14716245 original size:48 final size:48
Alignment explanation
Indices: 14716158--14716251 Score: 152
Period size: 48 Copynumber: 2.0 Consensus size: 48
14716148 TCATAATGTG
* *
14716158 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAAC
1 GCCGATGCCATATCACAAACATGGTCTTACACTAGCACACATATCAAC
* *
14716206 GCCGATGCCATATCACAGACATGGTCTTACACTATCACACATATCA
1 GCCGATGCCATATCACAAACATGGTCTTACACTAGCACACATATCA
14716252 CCCATATGTC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.32, C:0.32, G:0.14, T:0.22
Consensus pattern (48 bp):
GCCGATGCCATATCACAAACATGGTCTTACACTAGCACACATATCAAC
Found at i:14717820 original size:14 final size:14
Alignment explanation
Indices: 14717801--14717836 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
14717791 TTAAAAATAA
14717801 AAATAAAATAAAAT
1 AAATAAAATAAAAT
* *
14717815 AAATAAAGTTAAAT
1 AAATAAAATAAAAT
14717829 AAATAAAA
1 AAATAAAA
14717837 AAGACACAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:14719700 original size:10 final size:11
Alignment explanation
Indices: 14719685--14719726 Score: 70
Period size: 10 Copynumber: 4.0 Consensus size: 11
14719675 TCTGAATATC
14719685 CATTT-AGGTA
1 CATTTAAGGTA
14719695 CATTTAAGGTA
1 CATTTAAGGTA
14719706 CATTT-AGGTA
1 CATTTAAGGTA
14719716 CATTTAAGGTA
1 CATTTAAGGTA
14719727 AGCATACAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
10 15 0.50
11 15 0.50
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (11 bp):
CATTTAAGGTA
Found at i:14719711 original size:21 final size:21
Alignment explanation
Indices: 14719685--14719726 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
14719675 TCTGAATATC
14719685 CATTTAGGTACATTTAAGGTA
1 CATTTAGGTACATTTAAGGTA
14719706 CATTTAGGTACATTTAAGGTA
1 CATTTAGGTACATTTAAGGTA
14719727 AGCATACAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (21 bp):
CATTTAGGTACATTTAAGGTA
Found at i:14719749 original size:11 final size:11
Alignment explanation
Indices: 14719733--14719758 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
14719723 GGTAAGCATA
14719733 CAAAGCATATC
1 CAAAGCATATC
14719744 CAAAGCATATC
1 CAAAGCATATC
14719755 CAAA
1 CAAA
14719759 CTGAATTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.27, G:0.08, T:0.15
Consensus pattern (11 bp):
CAAAGCATATC
Found at i:14720135 original size:25 final size:25
Alignment explanation
Indices: 14720107--14720155 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
14720097 AAGCTCCTCC
14720107 GAGCTGAATAACGGTAAGCTCATAT
1 GAGCTGAATAACGGTAAGCTCATAT
** *
14720132 GAGCTGGGTATCGGTAAGCTCATA
1 GAGCTGAATAACGGTAAGCTCATA
14720156 AGAGTTGTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (25 bp):
GAGCTGAATAACGGTAAGCTCATAT
Found at i:14725174 original size:38 final size:38
Alignment explanation
Indices: 14725068--14725201 Score: 128
Period size: 38 Copynumber: 3.4 Consensus size: 38
14725058 TCTAAGCTAG
* * * * *
14725068 GACATATTTAAAACAT-ATATTTAAGATGTCCTAAACTAT
1 GACATAATTAAAAC-TCATATTAAAAATGTTC-AAATTAT
* * *
14725107 GACATAATTAAAAACCCTTATTAAAAATGTTCAGATTAT
1 GACATAATT-AAAACTCATATTAAAAATGTTCAAATTAT
14725146 GACATAATTAAAACTCATA-TAAATAATGTTCAAATTAT
1 GACATAATTAAAACTCATATTAAA-AATGTTCAAATTAT
*
14725184 GGCATAATTAAATACTCA
1 GACATAATTAAA-ACTCA
14725202 AACTAATTTT
Statistics
Matches: 79, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
37 4 0.05
38 32 0.41
39 27 0.34
40 16 0.20
ACGTcount: A:0.46, C:0.13, G:0.07, T:0.34
Consensus pattern (38 bp):
GACATAATTAAAACTCATATTAAAAATGTTCAAATTAT
Found at i:14726853 original size:25 final size:25
Alignment explanation
Indices: 14726821--14726929 Score: 119
Period size: 25 Copynumber: 4.4 Consensus size: 25
14726811 AGCTGTAAAT
*
14726821 GGTAAGCTCCTCCGAGCTGAATTAC
1 GGTAAGCTCCTCCGAGCTGAATAAC
* *
14726846 GGTAAGCTCCTCCGAGCTAAATAAA
1 GGTAAGCTCCTCCGAGCTGAATAAC
* *
14726871 GGTAAGCTCCTCTGAGTTGAATAAC
1 GGTAAGCTCCTCCGAGCTGAATAAC
* ** * * *
14726896 GGTAATCTTATACGAGCTGAGTATC
1 GGTAAGCTCCTCCGAGCTGAATAAC
14726921 GGTAAGCTC
1 GGTAAGCTC
14726930 ATAAGAGCTA
Statistics
Matches: 67, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 67 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (25 bp):
GGTAAGCTCCTCCGAGCTGAATAAC
Found at i:14726912 original size:50 final size:51
Alignment explanation
Indices: 14726802--14726913 Score: 131
Period size: 50 Copynumber: 2.3 Consensus size: 51
14726792 GTACATGTAT
* *
14726802 GCTCATACGAGCT--GTAAATGGTAAGCTCCTCCGAGCTGAATTACGGTAA
1 GCTCATACGAGCTAAATAAATGGTAAGCTCCTCCGAGCTGAATAACGGTAA
* * * *
14726851 GCTCCTCCGAGCTAAATAAA-GGTAAGCTCCTCTGAGTTGAATAACGGTAA
1 GCTCATACGAGCTAAATAAATGGTAAGCTCCTCCGAGCTGAATAACGGTAA
* *
14726901 TCTTATACGAGCT
1 GCTCATACGAGCT
14726914 GAGTATCGGT
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
49 11 0.22
50 36 0.71
51 4 0.08
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (51 bp):
GCTCATACGAGCTAAATAAATGGTAAGCTCCTCCGAGCTGAATAACGGTAA
Found at i:14729907 original size:48 final size:48
Alignment explanation
Indices: 14729768--14729972 Score: 232
Period size: 48 Copynumber: 4.2 Consensus size: 48
14729758 TAGGAATAGA
*
14729768 CTTACACTGGCTCTAATAATGTGGCCGATGCCATGTCCCAGACATGGT
1 CTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAGACATGGT
* * *
14729816 CTTACACTAGCTCTCATAATATAATATGGCCGATGCCATGTCCCGGACATGGT
1 CTTACACTGGCTCTC-----ATAATGTGGCCGATGCCATGTCCCAGACATGGT
*
14729869 CTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAAACATGGT
1 CTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAGACATGGT
* * * *** * *
14729917 CTTACACTAGCACACAT-ATCAACGCCGATGCCATATCACAGACATGGT
1 CTTACACTGGCTCTCATAAT-GTGGCCGATGCCATGTCCCAGACATGGT
14729965 CTTACACT
1 CTTACACT
14729973 ATCACACATA
Statistics
Matches: 134, Mismatches: 17, Indels: 12
0.82 0.10 0.07
Matches are distributed among these distances:
47 2 0.01
48 87 0.65
53 45 0.34
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (48 bp):
CTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAGACATGGT
Found at i:14731554 original size:14 final size:14
Alignment explanation
Indices: 14731535--14731570 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
14731525 TTAAAAATAA
14731535 AAATAAAATAAAAT
1 AAATAAAATAAAAT
* *
14731549 AAATAAAGTTAAAT
1 AAATAAAATAAAAT
14731563 AAATAAAA
1 AAATAAAA
14731571 AAGACACAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:14733434 original size:10 final size:11
Alignment explanation
Indices: 14733419--14733460 Score: 70
Period size: 10 Copynumber: 4.0 Consensus size: 11
14733409 TCTGAATATC
14733419 CATTT-AGGTA
1 CATTTAAGGTA
14733429 CATTTAAGGTA
1 CATTTAAGGTA
14733440 CATTT-AGGTA
1 CATTTAAGGTA
14733450 CATTTAAGGTA
1 CATTTAAGGTA
14733461 AGCATACAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
10 15 0.50
11 15 0.50
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (11 bp):
CATTTAAGGTA
Found at i:14733445 original size:21 final size:21
Alignment explanation
Indices: 14733419--14733460 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
14733409 TCTGAATATC
14733419 CATTTAGGTACATTTAAGGTA
1 CATTTAGGTACATTTAAGGTA
14733440 CATTTAGGTACATTTAAGGTA
1 CATTTAGGTACATTTAAGGTA
14733461 AGCATACAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (21 bp):
CATTTAGGTACATTTAAGGTA
Found at i:14733483 original size:11 final size:11
Alignment explanation
Indices: 14733467--14733492 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
14733457 GGTAAGCATA
14733467 CAAAGCATATC
1 CAAAGCATATC
14733478 CAAAGCATATC
1 CAAAGCATATC
14733489 CAAA
1 CAAA
14733493 CTGAATTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.27, G:0.08, T:0.15
Consensus pattern (11 bp):
CAAAGCATATC
Found at i:14733869 original size:25 final size:25
Alignment explanation
Indices: 14733841--14733889 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
14733831 AAGCTCCTCC
14733841 GAGCTGAATAACGGTAAGCTCATAT
1 GAGCTGAATAACGGTAAGCTCATAT
** *
14733866 GAGCTGGGTATCGGTAAGCTCATA
1 GAGCTGAATAACGGTAAGCTCATA
14733890 AGAGTTGTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (25 bp):
GAGCTGAATAACGGTAAGCTCATAT
Found at i:14738908 original size:38 final size:38
Alignment explanation
Indices: 14738802--14738935 Score: 128
Period size: 38 Copynumber: 3.4 Consensus size: 38
14738792 TCTAAGCTAG
* * * * *
14738802 GACATATTTAAAACAT-ATATTTAAGATGTCCTAAACTAT
1 GACATAATTAAAAC-TCATATTAAAAATGTTC-AAATTAT
* * *
14738841 GACATAATTAAAAACCCTTATTAAAAATGTTCAGATTAT
1 GACATAATT-AAAACTCATATTAAAAATGTTCAAATTAT
14738880 GACATAATTAAAACTCATA-TAAATAATGTTCAAATTAT
1 GACATAATTAAAACTCATATTAAA-AATGTTCAAATTAT
*
14738918 GGCATAATTAAATACTCA
1 GACATAATTAAA-ACTCA
14738936 AACTAATTTT
Statistics
Matches: 79, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
37 4 0.05
38 32 0.41
39 27 0.34
40 16 0.20
ACGTcount: A:0.46, C:0.13, G:0.07, T:0.34
Consensus pattern (38 bp):
GACATAATTAAAACTCATATTAAAAATGTTCAAATTAT
Found at i:14740587 original size:25 final size:25
Alignment explanation
Indices: 14740555--14740663 Score: 119
Period size: 25 Copynumber: 4.4 Consensus size: 25
14740545 AGCTGTAAAT
*
14740555 GGTAAGCTCCTCCGAGCTGAATTAC
1 GGTAAGCTCCTCCGAGCTGAATAAC
* *
14740580 GGTAAGCTCCTCCGAGCTAAATAAA
1 GGTAAGCTCCTCCGAGCTGAATAAC
* *
14740605 GGTAAGCTCCTCTGAGTTGAATAAC
1 GGTAAGCTCCTCCGAGCTGAATAAC
* ** * * *
14740630 GGTAATCTTATACGAGCTGAGTATC
1 GGTAAGCTCCTCCGAGCTGAATAAC
14740655 GGTAAGCTC
1 GGTAAGCTC
14740664 ATAAGAGCTA
Statistics
Matches: 67, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 67 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (25 bp):
GGTAAGCTCCTCCGAGCTGAATAAC
Found at i:14740646 original size:50 final size:51
Alignment explanation
Indices: 14740536--14740647 Score: 131
Period size: 50 Copynumber: 2.3 Consensus size: 51
14740526 GTACATGTAT
* *
14740536 GCTCATACGAGCT--GTAAATGGTAAGCTCCTCCGAGCTGAATTACGGTAA
1 GCTCATACGAGCTAAATAAATGGTAAGCTCCTCCGAGCTGAATAACGGTAA
* * * *
14740585 GCTCCTCCGAGCTAAATAAA-GGTAAGCTCCTCTGAGTTGAATAACGGTAA
1 GCTCATACGAGCTAAATAAATGGTAAGCTCCTCCGAGCTGAATAACGGTAA
* *
14740635 TCTTATACGAGCT
1 GCTCATACGAGCT
14740648 GAGTATCGGT
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
49 11 0.22
50 36 0.71
51 4 0.08
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (51 bp):
GCTCATACGAGCTAAATAAATGGTAAGCTCCTCCGAGCTGAATAACGGTAA
Found at i:14743572 original size:46 final size:45
Alignment explanation
Indices: 14743519--14743690 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 45
14743509 TGGGCATCTG
14743519 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCC
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCC
*** * * *
14743565 AACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-TCCG
1 AACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCCC
*
14743612 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCC
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCC
*
14743657 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14743691 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 62 0.59
47 31 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCCC
Found at i:14743670 original size:93 final size:93
Alignment explanation
Indices: 14743511--14743682 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
14743501 AGGATATTTG
* *
14743511 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCCAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAG
14743576 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
14743604 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCC-AACTCGTTGA
14743668 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
14743683 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 3 0.04
93 71 0.96
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:14759956 original size:45 final size:46
Alignment explanation
Indices: 14759824--14759945 Score: 165
Period size: 48 Copynumber: 2.6 Consensus size: 46
14759814 GGTTATTTGT
* *
14759824 GATCCCATGTAAGACCATGTCTAGGTCATGGCATTGGCATTGTCATGC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTG--ATGC
* * * *
14759872 GATCCCATGTAAAACCATTTTTGGAACATGGCATTGGCATTG-TGC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATGC
14759917 GATCCCATGTAAGACCATGTCTGGGACAT
1 GATCCCATGTAAGACCATGTCTGGGACAT
14759946 CATATTGGCA
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
45 28 0.44
48 36 0.56
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (46 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATGC
Found at i:14768302 original size:15 final size:15
Alignment explanation
Indices: 14768282--14768312 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
14768272 GTATGTACCA
14768282 ATTCCATTATGATAT
1 ATTCCATTATGATAT
14768297 ATTCCATTATGATAT
1 ATTCCATTATGATAT
14768312 A
1 A
14768313 GCCTATGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.45
Consensus pattern (15 bp):
ATTCCATTATGATAT
Found at i:14774342 original size:48 final size:48
Alignment explanation
Indices: 14774267--14774533 Score: 201
Period size: 48 Copynumber: 5.6 Consensus size: 48
14774257 CATGGTAACG
**
14774267 TGCCAATGCCAAATCCCAGATATGGTCTTACATGGGACCATATATCGA
1 TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGACCATATATCGA
*
14774315 TGCCAATGCCATGTCCCAGATAGGGTCTTACATGGGATCACATATATCGA
1 TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGA-C-CATATATCGA
* * * * *
14774365 AGCCGAT---A-G-CCCA-ACTATGGTCTTACACGATGTCC-TATATCGA
1 TGCCAATGCCATGTCCCAGA-TATGGTCTTACATG-GGACCATATATCGA
* * * * * *
14774408 TGCCAATGCCATGTCCCGGACATGGTCTTACATGGAATCACATAACGA
1 TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGACCATATATCGA
* * * * * * * *
14774456 TGCAAAAGCCATGTCCCAAACATGG-CTTTATATGAGATC-TCACATCGA
1 TGCCAATGCCATGTCCCAGATATGGTC-TTACATGGGACCAT-ATATCGA
* *
14774504 TGCCGATGCCATATCCCAGATATGGTCTTA
1 TGCCAATGCCATGTCCCAGATATGGTCTTA
14774534 TACGGGATCT
Statistics
Matches: 169, Mismatches: 36, Indels: 28
0.73 0.15 0.12
Matches are distributed among these distances:
43 13 0.08
44 2 0.01
45 17 0.10
46 3 0.02
47 4 0.02
48 112 0.66
49 3 0.02
50 15 0.09
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.25
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGACCATATATCGA
Found at i:14774927 original size:67 final size:67
Alignment explanation
Indices: 14774819--14775087 Score: 529
Period size: 67 Copynumber: 4.0 Consensus size: 67
14774809 CTATAATAGC
14774819 AAATTTCACTTATTTAATTATCACATTATTCAAACCAGTCCATAAATCATATTTTTATAAAATTA
1 AAATTTCACTTATTTAATTATCACATTATTCAAACCAGTCCATAAATCATATTTTTATAAAATTA
14774884 CA
66 CA
14774886 AAATTTCACTTATTTAATTATCACATTATTCAAACCAGTCCATAAATCATATTTTTATAAAATTA
1 AAATTTCACTTATTTAATTATCACATTATTCAAACCAGTCCATAAATCATATTTTTATAAAATTA
14774951 CA
66 CA
14774953 AAATTTCACTTATTTAATTATCACATTATTCAAACCAGTCCATAAATCATATTTTTATAAAATTA
1 AAATTTCACTTATTTAATTATCACATTATTCAAACCAGTCCATAAATCATATTTTTATAAAATTA
14775018 CA
66 CA
*
14775020 AAATTTCACTTATTTAATTATCACATTATTCAAACCAGTCCATAAATCATATTTTTGTAAAATTA
1 AAATTTCACTTATTTAATTATCACATTATTCAAACCAGTCCATAAATCATATTTTTATAAAATTA
14775085 CA
66 CA
14775087 A
1 A
14775088 TTTTACCCCT
Statistics
Matches: 201, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 201 1.00
ACGTcount: A:0.42, C:0.16, G:0.02, T:0.40
Consensus pattern (67 bp):
AAATTTCACTTATTTAATTATCACATTATTCAAACCAGTCCATAAATCATATTTTTATAAAATTA
CA
Found at i:14776482 original size:58 final size:58
Alignment explanation
Indices: 14776392--14776509 Score: 184
Period size: 58 Copynumber: 2.0 Consensus size: 58
14776382 ACCTCAATAA
14776392 GTTTGTGTAACTTACAAGCATTATCTTTATGTTTCAGGGATTGACG-AAAAGTGAGTTC
1 GTTTGTGTAACTTACAAGCATTATCTTTATGTTTCAGGGATTGA-GAAAAAGTGAGTTC
** *
14776450 GTTTGTGTAACTTACAAGTGTTATCTTTATGTTTCAGGTATTGAGAAAAAAGTGAGTTC
1 GTTTGTGTAACTTACAAGCATTATCTTTATGTTTCAGGGATTGAG-AAAAAGTGAGTTC
14776509 G
1 G
14776510 CCAAGAGAGA
Statistics
Matches: 55, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
57 1 0.02
58 41 0.75
59 13 0.24
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.39
Consensus pattern (58 bp):
GTTTGTGTAACTTACAAGCATTATCTTTATGTTTCAGGGATTGAGAAAAAGTGAGTTC
Found at i:14778571 original size:6 final size:6
Alignment explanation
Indices: 14778560--14778604 Score: 81
Period size: 6 Copynumber: 7.5 Consensus size: 6
14778550 CAATTAATAG
*
14778560 AGATGT AGATGT AGATGT AGATGT AGATGT AGATGT AGAGGT AGA
1 AGATGT AGATGT AGATGT AGATGT AGATGT AGATGT AGATGT AGA
14778605 ATTAACAACT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.36, C:0.00, G:0.36, T:0.29
Consensus pattern (6 bp):
AGATGT
Found at i:14781209 original size:39 final size:40
Alignment explanation
Indices: 14781164--14781335 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
14781154 GCTCCTCGTT
* * *
14781164 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
14781204 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
14781243 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
14781283 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
*
14781323 CAAAAGCCTTCGG
1 CAAATGCCTTCGG
14781336 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:14781264 original size:40 final size:39
Alignment explanation
Indices: 14781166--14781388 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
14781156 TCCTCGTTCA
* * * *
14781166 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
14781205 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
14781244 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
14781284 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
* ** * * * *
14781324 AAAAGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
14781365 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
14781389 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 20, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 106 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:14781397 original size:41 final size:41
Alignment explanation
Indices: 14781320--14781397 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
14781310 TTTGTATCTC
* * *
14781320 GCACAAAAGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAAGCCTTCGGATCTTAGCCCGGACACATTCACTTA
14781361 GCAC-AAAGCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAAGCCTTC-GGATCTTAGCCCGGACA-CATTCA
14781398 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 20 0.62
41 12 0.38
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (41 bp):
GCACAAAAGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Done.