Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56482370
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1659275 characters in sequence are not A, C, G, or T
File 46 of 172
Found at i:14784514 original size:45 final size:45
Alignment explanation
Indices: 14784449--14784663 Score: 217
Period size: 45 Copynumber: 4.9 Consensus size: 45
14784439 TGTACAGTAC
* *
14784449 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
1 TATTCGGGCCTTTGAACCTAGCAGGCTATAATGCCGGTGAGATAT
* * *
14784494 TATTCGGGCCTTTGAACCTAGTAGGCTACAATGCCGGTGAGACAT
1 TATTCGGGCCTTTGAACCTAGCAGGCTATAATGCCGGTGAGATAT
* * * *
14784539 TATCCGGGCCTTGGAACCTAGTAGGCTATAATGCCAGTGAGATAT
1 TATTCGGGCCTTTGAACCTAGCAGGCTATAATGCCGGTGAGATAT
* * * *
14784584 TATTCGGGCC-TCGAGCCTAGCAGGC-AAAATACCGGTGA-ATGA-
1 TATTCGGGCCTTTGAACCTAGCAGGCTATAATGCCGGTGAGAT-AT
* ** * *
14784626 -ATTCGAGTTTTTAAACCTAGCAGGCTA-AATGTCGGTGA
1 TATTCGGGCCTTTGAACCTAGCAGGCTATAATGCCGGTGA
14784664 TTTGATAAAA
Statistics
Matches: 142, Mismatches: 25, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
41 6 0.04
42 23 0.16
43 12 0.08
44 12 0.08
45 89 0.63
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAACCTAGCAGGCTATAATGCCGGTGAGATAT
Found at i:14796298 original size:48 final size:48
Alignment explanation
Indices: 14796181--14796495 Score: 279
Period size: 48 Copynumber: 6.6 Consensus size: 48
14796171 TGATATGTGT
* * * * * *
14796181 GCTAGTGTAAGACTATGTCTGGGAAATGGCAACAGCCACATTAT-GGA-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GGCATATTATAAGAG
* *
14796228 ACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATAAGAG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATATTATAAGAG
* * *
14796277 GC-AGTGTAAGACCATGTCTGGGACATGGCATTGGC-GATTATGAGA-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATATTATAAGAG
* * * * * * * *
14796322 GCCAGTGTAAAACCATGTCTAGGACATGGCATTGGCGT-TGATATGTG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATATTATAAGAG
* * *
14796369 TGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGA-
1 -GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATATTATAAGAG
* * *
14796418 GCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCAT-TGAGACA-AG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATATTATA-AGAG
*
14796465 AGCTAGTGTAAGACCATGTCTAGGACATGGC
1 -GCTAGTGTAAGACCATGTCTGGGACATGGC
14796496 GTCGATAATT
Statistics
Matches: 219, Mismatches: 37, Indels: 23
0.78 0.13 0.08
Matches are distributed among these distances:
45 2 0.01
46 46 0.21
47 39 0.18
48 127 0.58
49 2 0.01
50 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATATTATAAGAG
Found at i:14796439 original size:142 final size:142
Alignment explanation
Indices: 14796231--14796495 Score: 419
Period size: 142 Copynumber: 1.9 Consensus size: 142
14796221 TTATGGAACC
* *
14796231 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATAAGAGGCAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATAAGAGGCAGTGTAAGACCATGTCT
14796296 GGGACATGGCATTGGCGATT-ATG-AGAGCCAGTGTAAAACCATGTCTAGGACATGGCATTGGCG
66 GGGACATGGCATTGGC-ATTGA-GAAGAGCCAGTGTAAAACCATGTCTAGGACATGGCATTGGCG
14796359 TTGATATGTGTGCT
129 TTGATATGTGTGCT
*
14796373 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGA-GCTAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATAAGAGGC-AGTGTAAGACCATGTC
* *
14796437 TGGGACATGGCATTGGCATTGAGACAAGAGCTAGTGTAAGACCATGTCTAGGACATGGC
65 TGGGACATGGCATTGGCATTGAG--AAGAGCCAGTGTAAAACCATGTCTAGGACATGGC
14796496 GTCGATAATT
Statistics
Matches: 113, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
141 6 0.05
142 76 0.67
144 31 0.27
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (142 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATAAGAGGCAGTGTAAGACCATGTCT
GGGACATGGCATTGGCATTGAGAAGAGCCAGTGTAAAACCATGTCTAGGACATGGCATTGGCGTT
GATATGTGTGCT
Found at i:14796447 original size:96 final size:96
Alignment explanation
Indices: 14796171--14796495 Score: 399
Period size: 96 Copynumber: 3.4 Consensus size: 96
14796161 GACATTTGGG
* * * * * *
14796171 TGATATGTGTGCTAGTGTAAGACTATGTCTGGGAAATGGCAACAGCCACATTATG-GAACCAGTG
1 TGATATGAGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTG
*
14796235 TAAGACCATGTCTGGGACATGGCATCGGCCAT
66 TAAGACCATGTCTGGGACATGGCATTGG-CAT
* * * *
14796267 ATTATAAGAG-GC-AGTGTAAGACCATGTCTGGGACATGGCATTGG-C-GATTATGAGAGCCAGT
1 -TGATATGAGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGT
* * *
14796328 GTAAAACCATGTCTAGGACATGGCATTGGCGT
65 GTAAGACCATGTCTGGGACATGGCATTGGCAT
* * *
14796360 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCTAGTG
1 TGATATGAGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTG
14796425 TAAGACCATGTCTGGGACATGGCATTGGCAT
66 TAAGACCATGTCTGGGACATGGCATTGGCAT
* ** * *
14796456 TGAGACAAGAGCTAGTGTAAGACCATGTCTAGGACATGGC
1 TGATATGAGTGCTAGTGTAAGACCATGTCTGGGACATGGC
14796496 GTCGATAATT
Statistics
Matches: 193, Mismatches: 30, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
92 6 0.03
93 10 0.05
94 65 0.34
95 28 0.15
96 78 0.40
97 6 0.03
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (96 bp):
TGATATGAGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTG
TAAGACCATGTCTGGGACATGGCATTGGCAT
Found at i:14798825 original size:28 final size:27
Alignment explanation
Indices: 14798783--14798880 Score: 90
Period size: 28 Copynumber: 3.5 Consensus size: 27
14798773 TAATTATATG
** *
14798783 TGGCACTTAACGTGCGAAGTATTGGGGA
1 TGGCACTTAGTGTGC-AAGTATTGAGGA
** *
14798811 TGGCACTTAGTGTGCAA-TACATCCAGAA
1 TGGCACTTAGTGTGCAAGT--ATTGAGGA
*
14798839 TGGCACTTAGTGTGCAAAGTAATGAGGA
1 TGGCACTTAGTGTGC-AAGTATTGAGGA
14798867 TGGCACTTAGTGTG
1 TGGCACTTAGTGTG
14798881 TGAAATCCAG
Statistics
Matches: 56, Mismatches: 10, Indels: 8
0.76 0.14 0.11
Matches are distributed among these distances:
26 1 0.02
27 2 0.04
28 50 0.89
29 2 0.04
30 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.27
Consensus pattern (27 bp):
TGGCACTTAGTGTGCAAGTATTGAGGA
Found at i:14798909 original size:54 final size:56
Alignment explanation
Indices: 14798794--14798909 Score: 155
Period size: 56 Copynumber: 2.1 Consensus size: 56
14798784 GGCACTTAAC
* * * * *
14798794 GTGCGAAGTATTGGGGATGGCACTTAGTGTGCAATACATCCAGAATGGCACTTAGT
1 GTGCAAAGTAATGAGGATGGCACTTAGTGTGCAATACATCCAGAACGACACTTAGT
**
14798850 GTGCAAAGTAATGAGGATGGCACTTAGTGTGTGA-A-ATCCAGAACGACACTTAGT
1 GTGCAAAGTAATGAGGATGGCACTTAGTGTGCAATACATCCAGAACGACACTTAGT
14798904 GTGCAA
1 GTGCAA
14798910 GGTATCGGGT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
54 23 0.43
55 1 0.02
56 29 0.55
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (56 bp):
GTGCAAAGTAATGAGGATGGCACTTAGTGTGCAATACATCCAGAACGACACTTAGT
Found at i:14799046 original size:32 final size:32
Alignment explanation
Indices: 14798985--14799051 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 32
14798975 TGAGTATGAG
* **
14798985 ATTGGTACGATATGGTACAGGTATCTACGAAA
1 ATTGGTACAATATAATACAGGTATCTACGAAA
* *
14799017 ATTGGTACAATATAATACATGTATGTACGAAA
1 ATTGGTACAATATAATACAGGTATCTACGAAA
14799049 ATT
1 ATT
14799052 CAATTGAGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.31
Consensus pattern (32 bp):
ATTGGTACAATATAATACAGGTATCTACGAAA
Found at i:14803296 original size:23 final size:23
Alignment explanation
Indices: 14803269--14803314 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
14803259 GGGAGTTCGC
14803269 GAGTGCACCATTCACAAAACAGT
1 GAGTGCACCATTCACAAAACAGT
*
14803292 GAGTGCACCATTCACAAAGCAGT
1 GAGTGCACCATTCACAAAACAGT
14803315 CTGTAGATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.37, C:0.26, G:0.20, T:0.17
Consensus pattern (23 bp):
GAGTGCACCATTCACAAAACAGT
Found at i:14820665 original size:28 final size:28
Alignment explanation
Indices: 14820633--14820702 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
14820623 ATAGTAAGTC
14820633 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
14820661 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
14820689 CGCACACTTAGTGC
1 CGCACACTTAGTGC
14820703 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:14827362 original size:19 final size:19
Alignment explanation
Indices: 14827334--14827371 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14827324 TCACAAAGTC
14827334 AGCAGAAAAGATAAATTTG
1 AGCAGAAAAGATAAATTTG
*
14827353 AGCAGGAAAGATAAATTTG
1 AGCAGAAAAGATAAATTTG
14827372 TCTATACGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.50, C:0.05, G:0.24, T:0.21
Consensus pattern (19 bp):
AGCAGAAAAGATAAATTTG
Found at i:14832213 original size:20 final size:20
Alignment explanation
Indices: 14832185--14832223 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14832175 TTTGTCTTTG
14832185 GATTAATAAATATGAATGTT
1 GATTAATAAATATGAATGTT
* * *
14832205 GATTTATAAGTTTGAATGT
1 GATTAATAAATATGAATGT
14832224 GGTAATTAGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.18, T:0.44
Consensus pattern (20 bp):
GATTAATAAATATGAATGTT
Found at i:14837508 original size:59 final size:59
Alignment explanation
Indices: 14837337--14837501 Score: 240
Period size: 59 Copynumber: 2.8 Consensus size: 59
14837327 CAGATCATAG
* * * *
14837337 AATCACATGCCTCTCAACAGGGATACTCAAATGCACTCAGACCCTAGCATGTATCACAT
1 AATCACATGCCTCTCAACGGGGCTACTCAAAAGCACCCAGACCCTAGCATGTATCACAT
* * * * * *
14837396 ATTCATATGCCTCTCAATGGGGCTACTCAAAAACACCTAAACCCTAGCATGTATCACAT
1 AATCACATGCCTCTCAACGGGGCTACTCAAAAGCACCCAGACCCTAGCATGTATCACAT
14837455 AATCACATGCCTCTCAACGGGGCTACTCAAAAGCACCCAGACCCTAG
1 AATCACATGCCTCTCAACGGGGCTACTCAAAAGCACCCAGACCCTAG
14837502 TGTGTATTAC
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
59 90 1.00
ACGTcount: A:0.33, C:0.32, G:0.14, T:0.21
Consensus pattern (59 bp):
AATCACATGCCTCTCAACGGGGCTACTCAAAAGCACCCAGACCCTAGCATGTATCACAT
Found at i:14840812 original size:37 final size:37
Alignment explanation
Indices: 14840762--14840852 Score: 173
Period size: 37 Copynumber: 2.5 Consensus size: 37
14840752 TTACGAAGTT
14840762 ATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTC
*
14840799 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTC
14840836 ATCGGGTCTTACCCGGA
1 ATCGGGTCTTACCCGGA
14840853 ATATATTTCC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (37 bp):
ATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTC
Found at i:14841053 original size:48 final size:48
Alignment explanation
Indices: 14840999--14841531 Score: 1030
Period size: 48 Copynumber: 11.1 Consensus size: 48
14840989 ACACATCGCC
* *
14840999 TACATATTTCACAATAGCCATTCGGTTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
14841047 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
14841095 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
14841143 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
14841191 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
14841239 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
14841287 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
14841335 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
14841383 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
14841431 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
14841479 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
14841527 TACAT
1 TACAT
14841532 CAATTTCAGC
Statistics
Matches: 481, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 481 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:14845011 original size:40 final size:40
Alignment explanation
Indices: 14844009--14845009 Score: 1750
Period size: 40 Copynumber: 25.0 Consensus size: 40
14843999 GCCCGAATAC
* * * *
14844009 ACATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* * * * *
14844049 ATAACACCAGCACGAATGCTCTTCGGGACTTAACCCTGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* * * * * *
14844089 ATAACTCTAGCACAAATGCTCTTTGAGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* * * *
14844129 ATAACACCAGCACAAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
14844169 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* ** *
14844209 ATAAGACTAGCACGAATGCTCTTCGGGGCTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* *
14844249 ATAACACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
14844289 ATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
14844329 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
14844369 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
14844409 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
14844449 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
14844489 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
14844529 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
14844569 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
14844609 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
14844649 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
14844689 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
14844729 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
14844769 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
14844809 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
14844849 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
14844889 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
14844929 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* *
14844969 ATAACACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
14845009 A
1 A
14845010 TATATAACTC
Statistics
Matches: 929, Mismatches: 32, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 929 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
Found at i:14845208 original size:45 final size:46
Alignment explanation
Indices: 14845143--14845235 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
14845133 CAAAGATCAC
14845143 ATTTATAGTCATAACACTCTTT-AAAATTGCATCACTTATACCCTT
1 ATTTATAGTCATAACACTCTTTCAAAATTGCATCACTTATACCCTT
*
14845188 ATTTATAGTCATAACTCTCTTTCAAAATTGCATCACTTATACCCTT
1 ATTTATAGTCATAACACTCTTTCAAAATTGCATCACTTATACCCTT
14845234 AT
1 AT
14845236 AATTCAATCC
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
45 21 0.46
46 25 0.54
ACGTcount: A:0.32, C:0.23, G:0.04, T:0.41
Consensus pattern (46 bp):
ATTTATAGTCATAACACTCTTTCAAAATTGCATCACTTATACCCTT
Found at i:14846371 original size:37 final size:37
Alignment explanation
Indices: 14846312--14846417 Score: 185
Period size: 37 Copynumber: 2.9 Consensus size: 37
14846302 AGCTCAGATG
* *
14846312 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
14846349 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
14846386 TAATCTCCACACGTAGTCATCGGGTCTTACCC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCC
14846418 AGAATATATT
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:14846622 original size:48 final size:48
Alignment explanation
Indices: 14846567--14846739 Score: 292
Period size: 48 Copynumber: 3.6 Consensus size: 48
14846557 ACACATCGCC
*
14846567 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
14846615 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
* * *
14846663 ATATATATATCACATTAACCATTCGACTTTACCACATATACATATCTCAT
1 ACATAT-T-TCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
14846713 ACATATTTCACATTAGCCATTCGGCTT
1 ACATATTTCACATTAGCCATTCGGCTT
14846740 CTATTCACAT
Statistics
Matches: 116, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
48 70 0.60
49 2 0.02
50 44 0.38
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
Found at i:14846793 original size:70 final size:72
Alignment explanation
Indices: 14846672--14846809 Score: 244
Period size: 70 Copynumber: 1.9 Consensus size: 72
14846662 TATATATATA
14846672 TCACATTAACCATTCGACTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGG
1 TCACATTAACCATTCGACTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGG
14846737 CTTCTAT
66 CTTCTAT
* *
14846744 TCACATTAACCATTCGGCTTTACCA-A-ATACATATCTCATACATATTTCACATTAGCCATTCTG
1 TCACATTAACCATTCGACTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGG
14846807 CTT
66 CTT
14846810 TACCACATAT
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
70 39 0.61
71 1 0.02
72 24 0.38
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (72 bp):
TCACATTAACCATTCGACTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGG
CTTCTAT
Found at i:14846817 original size:118 final size:122
Alignment explanation
Indices: 14846621--14846857 Score: 403
Period size: 118 Copynumber: 2.0 Consensus size: 122
14846611 TCATACATAT
* *
14846621 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATCACATTAACCATT
1 TTCACATTAACCATTCGGCTTTACCACATATACATATCTCATACATATATATCACATTAACCATT
14846686 CGACTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTCTA
66 CGACTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTCTA
*
14846743 TTCACATTAACCATTCGGCTTTACCA-A-ATACATATCTCATACATAT-T-TCACATTAGCCATT
1 TTCACATTAACCATTCGGCTTTACCACATATACATATCTCATACATATATATCACATTAACCATT
14846804 CTG-CTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
66 C-GACTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
14846858 TACCACATAT
Statistics
Matches: 111, Mismatches: 3, Indels: 6
0.93 0.03 0.05
Matches are distributed among these distances:
118 65 0.59
119 2 0.02
120 18 0.16
121 1 0.01
122 25 0.23
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (122 bp):
TTCACATTAACCATTCGGCTTTACCACATATACATATCTCATACATATATATCACATTAACCATT
CGACTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTCTA
Found at i:14846841 original size:48 final size:48
Alignment explanation
Indices: 14846743--14847698 Score: 1853
Period size: 48 Copynumber: 20.0 Consensus size: 48
14846733 TCGGCTTCTA
*
14846743 TTCACATTAACCATTCGGCTTTACCA-A-ATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
*
14846789 TTCACATTAGCCATTCTGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
14846837 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
14846885 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
14846933 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
14846981 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
14847029 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
14847077 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
14847125 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
14847173 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
14847221 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
14847269 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
14847317 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
14847365 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
14847413 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
14847461 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
14847509 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
*
14847557 TTCACATTAGCCATTCGGCTTTACCACAAATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
*
14847605 TTCACATTAGCCATTCGGCTTTACCACAAATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
*
14847653 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTTATACAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
14847699 CAATTTCAGC
Statistics
Matches: 902, Mismatches: 6, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
46 24 0.03
47 1 0.00
48 877 0.97
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
Found at i:14851192 original size:40 final size:40
Alignment explanation
Indices: 14851148--14851506 Score: 459
Period size: 40 Copynumber: 9.0 Consensus size: 40
14851138 GAATACACAT
* * * *
14851148 CACCAGCATGATTGCTCTTCGAGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
14851188 CACCAGCACAAATGCTCTTCGGGACTTAACCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * * *
14851228 CTCTAGCACAAATGCTCTTTGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
14851268 CACCAGCACGAATGCTCTTTGGGACTTAGCCCAGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * *
14851308 CACCAGCACAAATGCTTTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
14851348 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
** *
14851388 CACCAGCACGAATGCTCTTCGGGACTTAGCCTAGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
14851428 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * **
14851468 CGCCAGCACAAATGCTGGT-GGGAACTTAGCCCGGATATA
1 CACCAGCACGAATGCTCTTCGGG-ACTTAGCCCGGATATA
14851507 TATATAACTC
Statistics
Matches: 276, Mismatches: 42, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
39 3 0.01
40 273 0.99
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:14861929 original size:14 final size:14
Alignment explanation
Indices: 14861906--14861940 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
14861896 TTAGGTTGAG
*
14861906 AAAATAATTTAATT
1 AAAATTATTTAATT
14861920 AAAATTATTTAATT
1 AAAATTATTTAATT
14861934 AAAATTA
1 AAAATTA
14861941 ATAACATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
AAAATTATTTAATT
Found at i:14863862 original size:31 final size:31
Alignment explanation
Indices: 14863824--14863886 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
14863814 GCCAACACTT
14863824 AGGCTATTTTCCAAGCCTTATATTGTCCTTA
1 AGGCTATTTTCCAAGCCTTATATTGTCCTTA
14863855 AGGCTATTTTCCAAGCCTTATATTGTCCTTA
1 AGGCTATTTTCCAAGCCTTATATTGTCCTTA
14863886 A
1 A
14863887 TTCTTTCCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.24, C:0.22, G:0.13, T:0.41
Consensus pattern (31 bp):
AGGCTATTTTCCAAGCCTTATATTGTCCTTA
Found at i:14866434 original size:24 final size:24
Alignment explanation
Indices: 14866402--14866449 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
14866392 ATTTCAAGCC
14866402 AAGCTGAATCATTTTTATAACTAT
1 AAGCTGAATCATTTTTATAACTAT
14866426 AAGCTGAATCATTTTTATAACTAT
1 AAGCTGAATCATTTTTATAACTAT
14866450 GGCAGCCTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (24 bp):
AAGCTGAATCATTTTTATAACTAT
Found at i:14867653 original size:4 final size:4
Alignment explanation
Indices: 14867637--14867682 Score: 65
Period size: 4 Copynumber: 11.0 Consensus size: 4
14867627 TGGTTTACCG
*
14867637 ATTT ATTT CATTT ATTT ATTT ATTT ATTT TTGTT ATTT ATTT ATTT
1 ATTT ATTT -ATTT ATTT ATTT ATTT ATTT AT-TT ATTT ATTT ATTT
14867683 TTATTCCTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
4 31 0.82
5 7 0.18
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:14867661 original size:21 final size:21
Alignment explanation
Indices: 14867637--14867682 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
14867627 TGGTTTACCG
14867637 ATTTATTTCAT-TTATTTATTT
1 ATTTATTT-ATGTTATTTATTT
*
14867658 ATTTATTTTTGTTATTTATTT
1 ATTTATTTATGTTATTTATTT
14867679 ATTT
1 ATTT
14867683 TTATTCCTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 1 0.04
21 22 0.96
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (21 bp):
ATTTATTTATGTTATTTATTT
Found at i:14867683 original size:17 final size:16
Alignment explanation
Indices: 14867637--14867684 Score: 69
Period size: 17 Copynumber: 2.9 Consensus size: 16
14867627 TGGTTTACCG
*
14867637 ATTTATTTCATTTATTT
1 ATTTATTT-ATTTTTTT
14867654 ATTTATTTATTTTTGTT
1 ATTTATTTATTTTT-TT
14867671 ATTTATTTATTTTT
1 ATTTATTTATTTTT
14867685 ATTCCTCTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 5 0.17
17 24 0.83
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (16 bp):
ATTTATTTATTTTTTT
Found at i:14868093 original size:10 final size:10
Alignment explanation
Indices: 14868035--14868095 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
14868025 TTTTTGAAAT
14868035 TTATTAAAAA
1 TTATTAAAAA
*
14868045 TTTTATAAAAA
1 TTAT-TAAAAA
* *
14868056 ATATAAAAAA
1 TTATTAAAAA
*
14868066 TTA-TACATAA
1 TTATTA-AAAA
14868076 TTATTTAAAAA
1 TTA-TTAAAAA
14868087 TTATTAAAA
1 TTATTAAAA
14868096 TGATAATAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
9 1 0.03
10 22 0.56
11 14 0.36
12 2 0.05
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (10 bp):
TTATTAAAAA
Found at i:14877134 original size:17 final size:17
Alignment explanation
Indices: 14877102--14877135 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
14877092 TGAATGGCGG
14877102 ACACATAAACCAAGAAC
1 ACACATAAACCAAGAAC
14877119 ACACGATAAACC-AGAAC
1 ACAC-ATAAACCAAGAAC
14877136 TACGCCAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.56, C:0.29, G:0.09, T:0.06
Consensus pattern (17 bp):
ACACATAAACCAAGAAC
Found at i:14877381 original size:36 final size:35
Alignment explanation
Indices: 14877334--14877404 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 35
14877324 AACACCCGTC
*
14877334 TAAAACCTTATTTTGATGAGAAT-GATAGCAGGAAT
1 TAAAACCTTATTTTGATAAG-ATGGATAGCAGGAAT
14877369 NTAAAACCTTATTTTGATAAGATGGATAGCAGGAAT
1 -TAAAACCTTATTTTGATAAGATGGATAGCAGGAAT
14877405 GAGGAGTATA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
35 2 0.06
36 31 0.94
ACGTcount: A:0.39, C:0.08, G:0.20, T:0.31
Consensus pattern (35 bp):
TAAAACCTTATTTTGATAAGATGGATAGCAGGAAT
Found at i:14885178 original size:12 final size:12
Alignment explanation
Indices: 14885161--14885185 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14885151 ATGACATTTT
14885161 GGTGTATTCTAA
1 GGTGTATTCTAA
14885173 GGTGTATTCTAA
1 GGTGTATTCTAA
14885185 G
1 G
14885186 TCTGAGGACG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.28, T:0.40
Consensus pattern (12 bp):
GGTGTATTCTAA
Found at i:14892361 original size:14 final size:15
Alignment explanation
Indices: 14892324--14892371 Score: 55
Period size: 14 Copynumber: 3.3 Consensus size: 15
14892314 ATGATTAGTC
14892324 TATAATTATAATAAA
1 TATAATTATAATAAA
*
14892339 TATGA-TATAATAAA
1 TATAATTATAATAAA
*
14892353 TA-AATTATAGTAAAA
1 TATAATTATAAT-AAA
14892368 TATA
1 TATA
14892372 CCTGAGATTC
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
13 1 0.04
14 16 0.59
15 9 0.33
16 1 0.04
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (15 bp):
TATAATTATAATAAA
Found at i:14893565 original size:9 final size:9
Alignment explanation
Indices: 14893536--14893653 Score: 58
Period size: 9 Copynumber: 12.1 Consensus size: 9
14893526 AATAGTTTTT
*
14893536 TTTTTGTAA
1 TTTTTATAA
*
14893545 TTTTTA-AT
1 TTTTTATAA
*
14893553 TTTTTATCA
1 TTTTTATAA
*
14893562 TTTTAATAA
1 TTTTTATAA
14893571 TTTTTATATGA
1 TTTTTATA--A
*
14893582 TTATGTATAA
1 TT-TTTATAA
*
14893592 CTTTTTTTTATAG
1 ----TTTTTATAA
14893605 TTTTTATAA
1 TTTTTATAA
14893614 TTTTTAATAA
1 TTTTT-ATAA
*
14893624 TTTTTCTTTAA
1 -TTTT-TATAA
* *
14893635 TTTCTAAAA
1 TTTTTATAA
14893644 TTTTTATAA
1 TTTTTATAA
14893653 T
1 T
14893654 ACGTTCATAT
Statistics
Matches: 81, Mismatches: 17, Indels: 22
0.68 0.14 0.18
Matches are distributed among these distances:
8 7 0.09
9 43 0.53
10 8 0.10
11 10 0.12
12 6 0.07
13 5 0.06
14 2 0.02
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (9 bp):
TTTTTATAA
Found at i:14893894 original size:31 final size:30
Alignment explanation
Indices: 14893849--14893938 Score: 101
Period size: 31 Copynumber: 3.0 Consensus size: 30
14893839 TTTTTAGGCT
* ** **
14893849 TAAATAATTGAAAATTCAATTAAGTTCTTG
1 TAAATAATTAAAAATTCAATTAAGCCCTCA
14893879 TAAAGTAATTAAAAATT-AATTAAGCCCTCA
1 TAAA-TAATTAAAAATTCAATTAAGCCCTCA
*
14893909 TAAAATAATTAAAAAGTCAATTAAGCCCTC
1 T-AAATAATTAAAAATTCAATTAAGCCCTC
14893939 CATACCAACA
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
30 25 0.49
31 26 0.51
ACGTcount: A:0.48, C:0.12, G:0.08, T:0.32
Consensus pattern (30 bp):
TAAATAATTAAAAATTCAATTAAGCCCTCA
Found at i:14905838 original size:230 final size:230
Alignment explanation
Indices: 14905435--14905897 Score: 845
Period size: 230 Copynumber: 2.0 Consensus size: 230
14905425 CCCATCCATT
*
14905435 TAAACGGTTTCAAACTTTATCTAACACAAAGGAGAAAGTATTCCTCCCAACCCTATGATGAAAGA
1 TAAACGGTTTCAAACTTTATCTAACACAAAAGAGAAAGTATTCCTCCCAACCCTATGATGAAAGA
*
14905500 GAAGCATACCAAGGTAAACTCCCAAGTCCTCCACTCTAGTGAAACCCAACTTTGCACTTATTTCA
66 AAAGCATACCAAGGTAAACTCCCAAGTCCTCCACTCTAGTGAAACCCAACTTTGCACTTATTTCA
**
14905565 TTAGCTGCTAAATCTGACACATTGTTTGAGAAAAATACCTGCGTCTTTTGTCTATTGACTTTATG
131 TTAGCTGCTAAATCTGACACATTACTTGAGAAAAATACCTGCGTCTTTTGTCTATTGACTTTATG
14905630 ACCAGAGAACCAACAGAAACTCTCCAACACAATTC
196 ACCAGAGAACCAACAGAAACTCTCCAACACAATTC
14905665 TAAACGGTTTCAAACTTTATCTAACACAAAAGAGAAAGTATTCCTCCCAACCCTATGATGAAAGA
1 TAAACGGTTTCAAACTTTATCTAACACAAAAGAGAAAGTATTCCTCCCAACCCTATGATGAAAGA
*
14905730 AAAGCATACCAAGGTAAACTCCCAAGTCCTCCACTCTAGTGAAACCTAACTTTGCACTTATTTCA
66 AAAGCATACCAAGGTAAACTCCCAAGTCCTCCACTCTAGTGAAACCCAACTTTGCACTTATTTCA
*
14905795 TTAGCTGCTAAATCTGACACATTACTTGAGAAAAATACCTGCGTTTTTTGTCTATTGACTTTATG
131 TTAGCTGCTAAATCTGACACATTACTTGAGAAAAATACCTGCGTCTTTTGTCTATTGACTTTATG
* * *
14905860 ACCAGAGAACTAATAGAAACTCTCCAACACATTTC
196 ACCAGAGAACCAACAGAAACTCTCCAACACAATTC
14905895 TAA
1 TAA
14905898 GACAATCTGC
Statistics
Matches: 224, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
230 224 1.00
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.28
Consensus pattern (230 bp):
TAAACGGTTTCAAACTTTATCTAACACAAAAGAGAAAGTATTCCTCCCAACCCTATGATGAAAGA
AAAGCATACCAAGGTAAACTCCCAAGTCCTCCACTCTAGTGAAACCCAACTTTGCACTTATTTCA
TTAGCTGCTAAATCTGACACATTACTTGAGAAAAATACCTGCGTCTTTTGTCTATTGACTTTATG
ACCAGAGAACCAACAGAAACTCTCCAACACAATTC
Found at i:14918936 original size:159 final size:158
Alignment explanation
Indices: 14918581--14918953 Score: 441
Period size: 158 Copynumber: 2.4 Consensus size: 158
14918571 TAAATAGCTC
* *
14918581 GTTAATGGATATGTTCATTGCAAGCCATGATGATCATTATTCAGACATGTTCTTGAGTCTGCCAT
1 GTTAATGGATAAGTTCATTGCAAGCCATGATGATCATTATTCAGACATGTTCTTTAGTCTGCCAT
* *
14918646 GTAAGGATAAGTTTAGTTAGCTGTAGTGATGGCATTTTAACCATTTTTTATCCTTTAAGGATAAA
66 GTAAGGATAAGTTTAGTTAGATGTAGTGATGACATTTTAACCATTTTTTATCCTTTAAGGATAAA
* * * * *
14918711 TTTAGTCTGCCTTGAAAGGATAAGTTTA
131 TTCAGACTGACGTGAAAGGATAAGTCTA
* * **
14918739 CTTAATGGATAAGTTCATTGCAAGCCATGATGATCATTATGCAGACATGTTCTTTAGTCTGCTTT
1 GTTAATGGATAAGTTCATTGCAAGCCATGATGATCATTATTCAGACATGTTCTTTAGTCTGCCAT
* * ** *
14918804 GTAAGGATAAG-TT-GTTGGATGTAGTGATGACATTTTGACCATTTTTTATCCATTCTTTTGGCT
66 GTAAGGATAAGTTTAGTTAGATGTAGTGATGACATTTTAACCATTTTTTATCC--T-TTAAGGAT
* * * *
14918867 CATAGTTCAGACATGAGGT-AAAGTAT-TG-CTA
128 -A-AATTCAGAC-TGACGTGAAAGGATAAGTCTA
* *
14918898 GTTAATGGATAAGTACATTGCAAGCCATGATGATCATTATTCAGACATGTTTTTTA
1 GTTAATGGATAAGTTCATTGCAAGCCATGATGATCATTATTCAGACATGTTCTTTA
14918954 ACCTGTCATG
Statistics
Matches: 183, Mismatches: 26, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
156 34 0.19
157 2 0.01
158 71 0.39
159 59 0.32
160 2 0.01
161 12 0.07
162 3 0.02
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.39
Consensus pattern (158 bp):
GTTAATGGATAAGTTCATTGCAAGCCATGATGATCATTATTCAGACATGTTCTTTAGTCTGCCAT
GTAAGGATAAGTTTAGTTAGATGTAGTGATGACATTTTAACCATTTTTTATCCTTTAAGGATAAA
TTCAGACTGACGTGAAAGGATAAGTCTA
Found at i:14921093 original size:30 final size:30
Alignment explanation
Indices: 14921057--14921119 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
14921047 ATTTAACAAG
*
14921057 CAAATGCCTCTAAAATAATAATAAAATTAA
1 CAAATGCCTCTAAAATAATAAAAAAATTAA
*
14921087 CAAATGCCTTTAAAATAATAAAAAAATTAA
1 CAAATGCCTCTAAAATAATAAAAAAATTAA
14921117 CAA
1 CAA
14921120 TAAAATAAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.59, C:0.13, G:0.03, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAAAAAAATTAA
Found at i:14922081 original size:75 final size:76
Alignment explanation
Indices: 14921933--14922074 Score: 173
Period size: 75 Copynumber: 1.9 Consensus size: 76
14921923 AGGGGGAGAA
* * *** *
14921933 ATAAAATATTTATGGGGGATTTTGATTTTTGGGAGAAAAGGGGGAGGGAAAGTAAAAATTTTTGG
1 ATAAAAAATTTATAGGGGATTTTGATTTTTGGGAGAAAAGGGGGAGGGAAAGTAAAAAAAATTGA
14921998 AGGTAAGAGGG
66 AGGTAAGAGGG
* *
14922009 ATAAAAAATTTGTAGGGGA-TTTGATTTTTGGG-GTAAAA-GGGGAGGGGAAGTTAAAAAAAATT
1 ATAAAAAATTTATAGGGGATTTTGATTTTTGGGAG-AAAAGGGGGAGGGAAAG-TAAAAAAAATT
14922071 GAAG
64 GAAG
14922075 AGAAGAGTTG
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
74 12 0.21
75 28 0.50
76 16 0.29
ACGTcount: A:0.38, C:0.00, G:0.34, T:0.28
Consensus pattern (76 bp):
ATAAAAAATTTATAGGGGATTTTGATTTTTGGGAGAAAAGGGGGAGGGAAAGTAAAAAAAATTGA
AGGTAAGAGGG
Found at i:14929304 original size:16 final size:17
Alignment explanation
Indices: 14929265--14929304 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
14929255 AAATAAATTA
14929265 AACTAAATTGAATAAAC
1 AACTAAATTGAATAAAC
14929282 AGA--AAATTGAA-AAAC
1 A-ACTAAATTGAATAAAC
14929297 AACTAAAT
1 AACTAAAT
14929305 CATAATATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 7
0.74 0.00 0.26
Matches are distributed among these distances:
14 1 0.05
15 5 0.25
16 12 0.60
17 1 0.05
18 1 0.05
ACGTcount: A:0.62, C:0.10, G:0.07, T:0.20
Consensus pattern (17 bp):
AACTAAATTGAATAAAC
Found at i:14936363 original size:6 final size:6
Alignment explanation
Indices: 14936352--14936376 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
14936342 CATTTCCATG
14936352 TCATTT TCATTT TCATTT TCATTT T
1 TCATTT TCATTT TCATTT TCATTT T
14936377 GGAGAAAGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (6 bp):
TCATTT
Found at i:14936425 original size:62 final size:62
Alignment explanation
Indices: 14936353--14936484 Score: 187
Period size: 62 Copynumber: 2.1 Consensus size: 62
14936343 ATTTCCATGT
* * *
14936353 CATTTTCATTTTCATTTTC-ATTTTGGAGAAAGCCACATTCATTTCCAAATGATTCAT-TTCTC
1 CATTTTCATTTTCA-TTTCAATTGTGGAGAAAACCACAGTCATTTCCAAATG-TTCATATTCTC
* *
14936415 CATTTTCATTTTCATTTCAATTGTGGAGAAAACCATAGTCATTTCCAAATGTTCCTATTCTC
1 CATTTTCATTTTCATTTCAATTGTGGAGAAAACCACAGTCATTTCCAAATGTTCATATTCTC
14936477 CATTTTCA
1 CATTTTCA
14936485 CCATTTCTGT
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
61 8 0.13
62 55 0.87
ACGTcount: A:0.27, C:0.21, G:0.08, T:0.44
Consensus pattern (62 bp):
CATTTTCATTTTCATTTCAATTGTGGAGAAAACCACAGTCATTTCCAAATGTTCATATTCTC
Found at i:14937314 original size:17 final size:17
Alignment explanation
Indices: 14937269--14937343 Score: 59
Period size: 17 Copynumber: 4.5 Consensus size: 17
14937259 ATAATTACTT
14937269 TAATATTAAATT-AATA
1 TAATATTAAATTAAATA
* *
14937285 AAATACT--ATTAAA-A
1 TAATATTAAATTAAATA
*
14937299 TAAGTATTAAATTAAATT
1 TAA-TATTAAATTAAATA
*
14937317 TAATATTAAATTATTAAAA
1 TAATATTAAATTA--AATA
14937336 TAATATTA
1 TAATATTA
14937344 TTTTTGGAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 11
0.71 0.11 0.17
Matches are distributed among these distances:
14 6 0.13
15 5 0.11
16 5 0.11
17 16 0.36
18 3 0.07
19 10 0.22
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.41
Consensus pattern (17 bp):
TAATATTAAATTAAATA
Found at i:14944183 original size:38 final size:38
Alignment explanation
Indices: 14944102--14944252 Score: 176
Period size: 38 Copynumber: 3.9 Consensus size: 38
14944092 GAATCCAGTC
* * * *
14944102 ACCAGCACAAAGCCTGCGGAACTTTAAGCCCGGATATAGT
1 ACCAGTACGAAGCCTGCGGGA-TTTAA-CCCGGATATATT
* *
14944142 ACCAGTACTATGCCTGCGGGATTTAACCCGGATATATT
1 ACCAGTACGAAGCCTGCGGGATTTAACCCGGATATATT
* *
14944180 ACCAGCACGAAGCCTGCAGGATTTAACCCGGATATATT
1 ACCAGTACGAAGCCTGCGGGATTTAACCCGGATATATT
* ** *
14944218 ACCAGTACGAAGCCTACTAGACTTAACCCGGATAT
1 ACCAGTACGAAGCCTGCGGGATTTAACCCGGATAT
14944253 GTATCGAGTG
Statistics
Matches: 97, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
38 75 0.77
39 5 0.05
40 17 0.18
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (38 bp):
ACCAGTACGAAGCCTGCGGGATTTAACCCGGATATATT
Found at i:14944222 original size:76 final size:78
Alignment explanation
Indices: 14944102--14944252 Score: 200
Period size: 76 Copynumber: 2.0 Consensus size: 78
14944092 GAATCCAGTC
* * * * *
14944102 ACCAGCACAAAGCCTGCGGAACTTTAAGCCCGGATATAGTACCAGTACTATGCCTGCGGGATTTA
1 ACCAGCACAAAGCCTGCGGAACTTTAAGCCCGGATATAGTACCAGTACGAAGCCTACGAGACTTA
14944167 ACCCGGATATATT
66 ACCCGGATATATT
* * *
14944180 ACCAGCACGAAGCCTGCAGG-A-TTTAA-CCCGGATATATTACCAGTACGAAGCCTACTAGACTT
1 ACCAGCACAAAGCCTGC-GGAACTTTAAGCCCGGATATAGTACCAGTACGAAGCCTACGAGACTT
14944242 AACCCGGATAT
65 AACCCGGATAT
14944253 GTATCGAGTG
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
76 40 0.62
77 5 0.08
78 17 0.27
79 2 0.03
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (78 bp):
ACCAGCACAAAGCCTGCGGAACTTTAAGCCCGGATATAGTACCAGTACGAAGCCTACGAGACTTA
ACCCGGATATATT
Found at i:14951398 original size:38 final size:38
Alignment explanation
Indices: 14951317--14951467 Score: 203
Period size: 38 Copynumber: 3.9 Consensus size: 38
14951307 GAATCCAGTC
* * *
14951317 ACCAGCACAAAGCCTGCGGAACTTTAAGCCCGGATATAGT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATATT
*
14951357 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
* *
14951395 ACCAGCACGAAGTCTGCGGGATTTAACCTGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
* * *
14951433 ACCAGCACGAAGCCTGGGGGACTTAACCTGGATAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
14951468 GTATCGAGTG
Statistics
Matches: 102, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
38 78 0.76
39 5 0.05
40 19 0.19
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.21
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
Found at i:14954477 original size:30 final size:30
Alignment explanation
Indices: 14954436--14954504 Score: 79
Period size: 30 Copynumber: 2.4 Consensus size: 30
14954426 AAAATCATAT
* * * *
14954436 TTTGGCAAAATTATATTTTTGTCCCTAAAC
1 TTTGTCAAAATTACACTTTTGCCCCTAAAC
*
14954466 TTTGTCAAAATTACACTTTTGCCCCTAGAC
1 TTTGTCAAAATTACACTTTTGCCCCTAAAC
14954496 -TTGT-AAAAT
1 TTTGTCAAAAT
14954505 AGTTTTTATT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 5 0.15
29 4 0.12
30 25 0.74
ACGTcount: A:0.30, C:0.19, G:0.10, T:0.41
Consensus pattern (30 bp):
TTTGTCAAAATTACACTTTTGCCCCTAAAC
Found at i:14957230 original size:13 final size:13
Alignment explanation
Indices: 14957214--14957279 Score: 89
Period size: 13 Copynumber: 5.1 Consensus size: 13
14957204 TTTAAACCAA
14957214 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
14957227 ACTTCTCAAAAGT
1 ACTTTTCAAAAGC
*
14957240 ACTTTTTC-ACAGC
1 AC-TTTTCAAAAGC
14957253 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
14957266 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
14957279 A
1 A
14957280 TTGCCAAACT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
12 5 0.11
13 36 0.80
14 4 0.09
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:14959286 original size:22 final size:22
Alignment explanation
Indices: 14959261--14959308 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
14959251 CACACGCCTA
*
14959261 TGTGGACGCAGGGGCACGCCCG
1 TGTGGACGCAGGGGCACACCCG
14959283 TGTGGACGCAGGGGCACACCCG
1 TGTGGACGCAGGGGCACACCCG
14959305 TGTG
1 TGTG
14959309 CCATCAACAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.15, C:0.29, G:0.44, T:0.12
Consensus pattern (22 bp):
TGTGGACGCAGGGGCACACCCG
Found at i:14968626 original size:4 final size:4
Alignment explanation
Indices: 14968612--14968715 Score: 55
Period size: 4 Copynumber: 26.8 Consensus size: 4
14968602 ATTTTTCAAT
*
14968612 TTTA TTTTA TTTA -TT- TTTA TTT- TTATT TTTA TTT- TATTA TTTA -TTA
1 TTTA -TTTA TTTA TTTA TTTA TTTA TT-TA TTTA TTTA T-TTA TTTA TTTA
* *
14968658 TTTA -TTA TTTA -TTA TTT- TATTA CTTTA TTTTA ATTA TTTA -TTA CTTA
1 TTTA TTTA TTTA TTTA TTTA T-TTA -TTTA -TTTA TTTA TTTA TTTA TTTA
*
14968705 ATTA TTTA TTT
1 TTTA TTTA TTT
14968716 TATTATTAAT
Statistics
Matches: 80, Mismatches: 6, Indels: 27
0.71 0.05 0.24
Matches are distributed among these distances:
3 20 0.25
4 45 0.56
5 14 0.17
6 1 0.01
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:14968626 original size:22 final size:22
Alignment explanation
Indices: 14968599--14968675 Score: 77
Period size: 22 Copynumber: 3.4 Consensus size: 22
14968589 AATTTGTATT
14968599 TTTATTTTTCAATTTTA-TTTTA
1 TTTATTTTT-AATTTTATTTTTA
*
14968621 TTTATTTTTATTTTTATTTTTA
1 TTTATTTTTAATTTTATTTTTA
*
14968643 TTTTATTATTTATTATTTATTATTTA
1 -TTTATT-TTTAAT-TTTATT-TTTA
14968669 -TTATTTT
1 TTTATTTT
14968676 ATTACTTTAT
Statistics
Matches: 49, Mismatches: 1, Indels: 9
0.83 0.02 0.15
Matches are distributed among these distances:
21 6 0.12
22 14 0.29
23 8 0.16
24 11 0.22
25 6 0.12
26 4 0.08
ACGTcount: A:0.22, C:0.01, G:0.00, T:0.77
Consensus pattern (22 bp):
TTTATTTTTAATTTTATTTTTA
Found at i:14968638 original size:34 final size:30
Alignment explanation
Indices: 14968590--14968699 Score: 109
Period size: 34 Copynumber: 3.5 Consensus size: 30
14968580 AGGCAGCCCA
*
14968590 ATTTGTATTTTTATTTTTCAATTTTATTTTATTT
1 ATTTTTATTTTTATTTTT--ATTTTA--TTATTT
14968624 ATTTTTATTTTTATTTTTATTTTATTATTT
1 ATTTTTATTTTTATTTTTATTTTATTATTT
14968654 A---TTATTTATTATTTATTATTTTATTACTTT
1 ATTTTTATTT-TTATTT-TTATTTTATTA-TTT
*
14968684 ATTTTAATTATTTATT
1 ATTTTTATT-TTTATT
14968700 ACTTAATTAT
Statistics
Matches: 67, Mismatches: 2, Indels: 15
0.80 0.02 0.18
Matches are distributed among these distances:
27 6 0.09
28 6 0.09
29 11 0.16
30 11 0.16
32 6 0.09
33 9 0.13
34 18 0.27
ACGTcount: A:0.24, C:0.02, G:0.01, T:0.74
Consensus pattern (30 bp):
ATTTTTATTTTTATTTTTATTTTATTATTT
Found at i:14968641 original size:7 final size:7
Alignment explanation
Indices: 14968597--14968675 Score: 58
Period size: 7 Copynumber: 11.4 Consensus size: 7
14968587 CCAATTTGTA
14968597 TTTTTAT
1 TTTTTAT
*
14968604 TTTTCA-
1 TTTTTAT
*
14968610 ATTTTAT
1 TTTTTAT
14968617 TTTATT-T
1 TTT-TTAT
14968624 ATTTTTA-
1 -TTTTTAT
14968631 TTTTTA-
1 TTTTTAT
14968637 TTTTTAT
1 TTTTTAT
14968644 TTTATTAT
1 TTT-TTAT
*
14968652 TTATTAT
1 TTTTTAT
*
14968659 TTATTAT
1 TTTTTAT
*
14968666 TTATTAT
1 TTTTTAT
14968673 TTT
1 TTT
14968676 ATTACTTTAT
Statistics
Matches: 60, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
6 16 0.27
7 33 0.55
8 11 0.18
ACGTcount: A:0.22, C:0.01, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTTTAT
Found at i:14968693 original size:29 final size:27
Alignment explanation
Indices: 14968613--14968722 Score: 125
Period size: 29 Copynumber: 3.9 Consensus size: 27
14968603 TTTTTCAATT
*
14968613 TTATTTTATTTATTT-TTATTTTTATTT-
1 TTATTTTA-TTATTTATT-TTATTATTTA
14968640 TTATTTTATTATTTATTATTTATTATTTA
1 TTATTTTATTATTTA-T-TTTATTATTTA
14968669 TTATTTTATTACTTTATTTTAATTATTTA
1 TTATTTTATTA-TTTATTTT-ATTATTTA
* *
14968698 TTACTTAATTATTTATTTTATTATT
1 TTATTTTATTATTTATTTTATTATT
14968723 AATAAAAAAT
Statistics
Matches: 74, Mismatches: 3, Indels: 12
0.83 0.03 0.13
Matches are distributed among these distances:
26 6 0.08
27 14 0.19
28 20 0.27
29 30 0.41
30 4 0.05
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (27 bp):
TTATTTTATTATTTATTTTATTATTTA
Found at i:14968697 original size:21 final size:20
Alignment explanation
Indices: 14968621--14968703 Score: 93
Period size: 21 Copynumber: 4.1 Consensus size: 20
14968611 TTTTATTTTA
14968621 TTTATTTTTATT-TTTATT--
1 TTTA-TTTTATTATTTATTAC
14968639 TTTATTTTATTATTTATTA-
1 TTTATTTTATTATTTATTAC
14968658 TTTATTATTTATTATTTTATTAC
1 TTTA-T-TTTATTA-TTTATTAC
14968681 TTTATTTTAATTATTTATTAC
1 TTTATTTT-ATTATTTATTAC
14968702 TT
1 TT
14968704 AATTATTTAT
Statistics
Matches: 58, Mismatches: 0, Indels: 11
0.84 0.00 0.16
Matches are distributed among these distances:
17 7 0.12
18 10 0.17
19 4 0.07
20 1 0.02
21 20 0.34
22 12 0.21
23 4 0.07
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTATTTTATTATTTATTAC
Found at i:14968723 original size:15 final size:15
Alignment explanation
Indices: 14968610--14968723 Score: 93
Period size: 15 Copynumber: 7.8 Consensus size: 15
14968600 TTATTTTTCA
14968610 ATTTTATT-TTATTT
1 ATTTTATTATTATTT
*
14968624 ATTTTTATTTTTATTT
1 A-TTTTATTATTATTT
14968640 -TTATT-TTATTATTT
1 ATT-TTATTATTATTT
*
14968654 ATTAT-TTATTATTT
1 ATTTTATTATTATTT
14968668 ATTATT-TTATTACTTT
1 ATT-TTATTATTA-TTT
14968684 ATTTTA--ATTATTT
1 ATTTTATTATTATTT
14968697 A--TTACTTAATTATTT
1 ATTTTA-TT-ATTATTT
14968712 ATTTTATTATTA
1 ATTTTATTATTA
14968724 ATAAAAAATA
Statistics
Matches: 84, Mismatches: 3, Indels: 25
0.75 0.03 0.22
Matches are distributed among these distances:
11 3 0.04
13 4 0.05
14 28 0.33
15 32 0.38
16 14 0.17
17 3 0.04
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (15 bp):
ATTTTATTATTATTT
Found at i:14971175 original size:10 final size:10
Alignment explanation
Indices: 14971162--14971201 Score: 62
Period size: 10 Copynumber: 4.0 Consensus size: 10
14971152 ATTTATTTTC
14971162 AATTATCTTT
1 AATTATCTTT
14971172 AATTATCTTT
1 AATTATCTTT
* *
14971182 ATTTATCTGT
1 AATTATCTTT
14971192 AATTATCTTT
1 AATTATCTTT
14971202 TAGAATTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.28, C:0.10, G:0.03, T:0.60
Consensus pattern (10 bp):
AATTATCTTT
Found at i:14977096 original size:45 final size:44
Alignment explanation
Indices: 14977028--14977117 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 44
14977018 GAACTATGTG
14977028 ATCTAAACTCATGAGTTGTGGTCTGAGTTCATGATATATGCGAC
1 ATCTAAACTCATGAGTTGTGGTCTGAGTTCATGATATATGCGAC
* *
14977072 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGAC
1 ATCTAAACTCA-TGAGTTGTGGTCTGAGTTCATGATATATGCGAC
14977117 A
1 A
14977118 CATGTTTCGG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
44 10 0.23
45 33 0.77
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (44 bp):
ATCTAAACTCATGAGTTGTGGTCTGAGTTCATGATATATGCGAC
Found at i:14978640 original size:20 final size:20
Alignment explanation
Indices: 14978615--14978666 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
14978605 ACAGAGAGTT
*
14978615 ACACGGGTGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
14978635 ACACGGGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
14978655 ACACGGGCGTGT
1 ACACGGGCGTGT
14978667 GTGACCACAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.19, C:0.35, G:0.33, T:0.13
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAGCC
Found at i:15002253 original size:23 final size:23
Alignment explanation
Indices: 15002227--15002271 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
15002217 TCTAAAACAA
*
15002227 TTTAAT-TTTTTTCTTTTTATTTC
1 TTTAATATTTTTTC-CTTTATTTC
*
15002250 TTTATTATTTTTTCCTTTATTT
1 TTTAATATTTTTTCCTTTATTT
15002272 TTCTCTCTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.13, C:0.09, G:0.00, T:0.78
Consensus pattern (23 bp):
TTTAATATTTTTTCCTTTATTTC
Found at i:15004820 original size:40 final size:40
Alignment explanation
Indices: 15004775--15005159 Score: 558
Period size: 40 Copynumber: 9.6 Consensus size: 40
15004765 CAAGCTCAAT
* * * * * *
15004775 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCACACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
15004815 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
15004855 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
15004895 CGCCGTCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
15004935 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
15004975 TGCCTTCGGGTCTTATCCTGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * * *
15005015 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
15005055 TGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGAT-ATATCAATTCGCACAAA
*
15005095 TGCCTTCTGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
15005135 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
15005160 CATTCAAATG
Statistics
Matches: 310, Mismatches: 31, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
39 6 0.02
40 300 0.97
41 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:15008834 original size:14 final size:14
Alignment explanation
Indices: 15008815--15008842 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
15008805 ACTAAGTTCG
15008815 TATCAATTATAATC
1 TATCAATTATAATC
15008829 TATCAATTATAATC
1 TATCAATTATAATC
15008843 AATAGTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (14 bp):
TATCAATTATAATC
Found at i:15009221 original size:40 final size:40
Alignment explanation
Indices: 15009168--15009264 Score: 117
Period size: 40 Copynumber: 2.4 Consensus size: 40
15009158 CTATCTCGGT
*
15009168 ATCGCACATTTAGTGCCTCA-TATAGCCGAAGCTATTCCAA
1 ATCGCACACTTAGTGCCT-ATTATAGCCGAAGCTATTCCAA
* * *
15009208 TTCGCACACTTAGTG-CTATTTATAGCCGAAGTTATTTCAA
1 ATCGCACACTTAGTGCCTA-TTATAGCCGAAGCTATTCCAA
*
15009248 ATCACACACTTAGTGCC
1 ATCGCACACTTAGTGCC
15009265 GAACATAGAA
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
38 1 0.02
39 2 0.04
40 44 0.92
41 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (40 bp):
ATCGCACACTTAGTGCCTATTATAGCCGAAGCTATTCCAA
Found at i:15012068 original size:40 final size:40
Alignment explanation
Indices: 15011877--15012061 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
15011867 TCAAATGATG
* * * *
15011877 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
15011917 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
15011957 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
15011996 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
15012037 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
15012062 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 33 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:15012083 original size:79 final size:79
Alignment explanation
Indices: 15011930--15012084 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
15011920 GGACTAAGAT
** **
15011930 CCGAAGGCATTTGTGCGAGATACTAATTTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
15011995 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
15012009 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
15012072 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
15012085 ATTTCGAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.60
80 24 0.37
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:15014735 original size:20 final size:20
Alignment explanation
Indices: 15014712--15014773 Score: 88
Period size: 20 Copynumber: 3.1 Consensus size: 20
15014702 ACACATTTGC
15014712 GTGGCTTGGGACACGCCCGT
1 GTGGCTTGGGACACGCCCGT
* **
15014732 GTGGCTTGAGACACGCTTGT
1 GTGGCTTGGGACACGCCCGT
*
15014752 GTGGCTTGGGACATGCCCGT
1 GTGGCTTGGGACACGCCCGT
15014772 GT
1 GT
15014774 AAGGAGGCCG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.11, C:0.24, G:0.39, T:0.26
Consensus pattern (20 bp):
GTGGCTTGGGACACGCCCGT
Found at i:15016432 original size:27 final size:27
Alignment explanation
Indices: 15016401--15016578 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
15016391 TAAATTGTAC
15016401 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
15016428 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
15016454 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
15016482 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
15016510 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
15016537 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
15016564 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
15016579 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:15016515 original size:82 final size:81
Alignment explanation
Indices: 15016402--15016557 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
15016392 AAATTGTACA
* *
15016402 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
15016466 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
15016483 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
15016548 TGCGAGTTGA
65 TGCGAATTGA
15016558 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:15016569 original size:82 final size:81
Alignment explanation
Indices: 15016398--15016578 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
15016388 GATTAAATTG
* *
15016398 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
15016463 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
15016479 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
15016543 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
15016561 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
15016579 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:15024463 original size:27 final size:26
Alignment explanation
Indices: 15024433--15024609 Score: 158
Period size: 27 Copynumber: 6.5 Consensus size: 26
15024423 AAATTGTACA
* *
15024433 GCACTAAGGGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTG
* *
15024460 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCG-ATTGACTATG-TG
* *
15024487 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTG
15024514 GCACTAAGTGTGCGAGTTGGACTATGTG
1 GCACTAAGTGTGCGA-TT-GACTATGTG
* * *
15024542 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGA-TTGACTATGTG
* * *
15024569 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTG
*
15024596 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
15024610 GGCTCAATAA
Statistics
Matches: 128, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.78
28 27 0.21
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTG
Found at i:15024547 original size:82 final size:81
Alignment explanation
Indices: 15024433--15024588 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
15024423 AAATTGTACA
* *
15024433 GCACTAAGGGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGGGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
15024497 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* * ** *
15024514 GCACTAAGTGTGCGAGTTGGACTATGTGGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGGGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
15024579 TGCGAGTTGA
65 TGCGAATTGA
15024589 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 14 0.22
82 50 0.77
83 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (81 bp):
GCACTAAGGGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:15024600 original size:82 final size:81
Alignment explanation
Indices: 15024429--15024609 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
15024419 GATTAAATTG
* * *
15024429 TACAGCACTAAGGGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
15024494 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
15024510 TGCGGCACTAAGTGTGCGAGTTGGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
15024574 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
15024592 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
15024610 GGCTCAATAA
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 17 0.21
82 65 0.79
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:15028028 original size:48 final size:48
Alignment explanation
Indices: 15027955--15028064 Score: 166
Period size: 48 Copynumber: 2.3 Consensus size: 48
15027945 ACATTATGAG
* * * *
15027955 AGCTAGTGTAAGACATGTTTGGGACATGCATCAGCTTCGAGATATACA
1 AGCTAGTGTAAGATATGTCTAGGACATGCATCAGCTTCAAGATATACA
* *
15028003 AGCTAGTGTAAGATATGTCTAGGACATGCATTAGCTTCAAGATGTACA
1 AGCTAGTGTAAGATATGTCTAGGACATGCATCAGCTTCAAGATATACA
15028051 AGCTAGTGTAAGAT
1 AGCTAGTGTAAGAT
15028065 CTGTTTGGGA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 56 1.00
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.28
Consensus pattern (48 bp):
AGCTAGTGTAAGATATGTCTAGGACATGCATCAGCTTCAAGATATACA
Found at i:15028156 original size:49 final size:49
Alignment explanation
Indices: 15028098--15028231 Score: 160
Period size: 49 Copynumber: 2.7 Consensus size: 49
15028088 TGTTGTCTGT
* * *
15028098 CAGTGTAAGACCTGTCTGGGACATGGCATTGACATCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCAATAGATGAAAGC
** * * **
15028147 CAGTGTAAGACCTGTCTGGGACACAGCATCGACCTCAATATATGAAATT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCAATAGATGAAAGC
* * *
15028196 CAGTGTAAGACCTGTCTTGGACATGGCGTCGGCATC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATC
15028232 TTATCCCATG
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
49 70 1.00
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCAATAGATGAAAGC
Found at i:15030979 original size:80 final size:80
Alignment explanation
Indices: 15030846--15031169 Score: 639
Period size: 80 Copynumber: 4.0 Consensus size: 80
15030836 TAGGTATTTT
*
15030846 TACCGATTATGTCATTTTACTCGTTTTCACGTAAAATCGTTTAGCAAAAGTTGTTTAACACAATT
1 TACCGTTTATGTCATTTTACTCGTTTTCACGTAAAATCGTTTAGCAAAAGTTGTTTAACACAATT
15030911 TAAAGTTTCATATTA
66 TAAAGTTTCATATTA
15030926 TACCGTTTATGTCATTTTACTCGTTTTCACGTAAAATCGTTTAGCAAAAGTTGTTTAACACAATT
1 TACCGTTTATGTCATTTTACTCGTTTTCACGTAAAATCGTTTAGCAAAAGTTGTTTAACACAATT
15030991 TAAAGTTTCATATTA
66 TAAAGTTTCATATTA
15031006 TACCGTTTATGTCATTTTACTCGTTTTCACGTAAAATCGTTTAGCAAAAGTTGTTTAACACAATT
1 TACCGTTTATGTCATTTTACTCGTTTTCACGTAAAATCGTTTAGCAAAAGTTGTTTAACACAATT
15031071 TAAAGTTTCATATTA
66 TAAAGTTTCATATTA
15031086 TACCGTTTATGTCATTTTACTCGTTTTCACGTAAAATCGTTTAGCAAAAGTTGTTTAACACAATT
1 TACCGTTTATGTCATTTTACTCGTTTTCACGTAAAATCGTTTAGCAAAAGTTGTTTAACACAATT
15031151 TAAAGTTTCATATTA
66 TAAAGTTTCATATTA
15031166 TACC
1 TACC
15031170 ATAAAACATC
Statistics
Matches: 243, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 243 1.00
ACGTcount: A:0.31, C:0.15, G:0.11, T:0.42
Consensus pattern (80 bp):
TACCGTTTATGTCATTTTACTCGTTTTCACGTAAAATCGTTTAGCAAAAGTTGTTTAACACAATT
TAAAGTTTCATATTA
Found at i:15036307 original size:47 final size:47
Alignment explanation
Indices: 15036245--15036367 Score: 228
Period size: 47 Copynumber: 2.6 Consensus size: 47
15036235 ATCCATAAGT
15036245 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* *
15036292 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTGCATCTCAT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
15036339 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
15036368 ACTCAAATAT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:15041061 original size:42 final size:41
Alignment explanation
Indices: 15041014--15041135 Score: 147
Period size: 42 Copynumber: 2.9 Consensus size: 41
15041004 TACCGTACCA
* * **
15041014 ATGCCATATCCTAGATATGGTCTTACATGGGATCTCATATC
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATC
* *
15041055 GATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCATATC
1 -ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATATC
15041098 ATTGCCATATCCCAGATATGGTCTTACAC-ATAATCTCA
1 A-TGCCATATCCCAGATATGGTCTTACACGA-AATCTCA
15041136 ACTAATCCTA
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
41 1 0.01
42 34 0.49
43 34 0.49
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATC
Found at i:15041077 original size:43 final size:42
Alignment explanation
Indices: 15041015--15041135 Score: 138
Period size: 43 Copynumber: 2.9 Consensus size: 42
15041005 ACCGTACCAA
* * * **
15041015 TGCCATATCCTAGATATGGTCTTACATGGGATCTCATATCGA-
1 TGCCATAGCCCAGATATGGTCTTACACGAAATCTCATATC-AT
*
15041057 TGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCATATCAT
1 TGCC-ATAGCCCAGATATGGTCTTACACGAAATCTCATATCAT
*
15041100 TGCCATATCCCAGATATGGTCTTACAC-ATAATCTCA
1 TGCCATAGCCCAGATATGGTCTTACACGA-AATCTCA
15041136 ACTAATCCTA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
41 1 0.01
42 33 0.49
43 34 0.50
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.31
Consensus pattern (42 bp):
TGCCATAGCCCAGATATGGTCTTACACGAAATCTCATATCAT
Found at i:15042164 original size:17 final size:18
Alignment explanation
Indices: 15042142--15042176 Score: 54
Period size: 17 Copynumber: 1.9 Consensus size: 18
15042132 AAGTTTTGCA
15042142 CTTTTTAC-AATTTAGTC
1 CTTTTTACAAATTTAGTC
15042159 CTTTTTACTAAATTTAGT
1 CTTTTTAC-AAATTTAGT
15042177 GCCCAAACGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
19 8 0.50
ACGTcount: A:0.26, C:0.14, G:0.06, T:0.54
Consensus pattern (18 bp):
CTTTTTACAAATTTAGTC
Found at i:15043195 original size:30 final size:30
Alignment explanation
Indices: 15043126--15043195 Score: 131
Period size: 30 Copynumber: 2.3 Consensus size: 30
15043116 CCATGTGCTA
*
15043126 GACCGTGTCCTCCACACGGCTGAGACACAT
1 GACCGTGTCTTCCACACGGCTGAGACACAT
15043156 GACCGTGTCTTCCACACGGCTGAGACACAT
1 GACCGTGTCTTCCACACGGCTGAGACACAT
15043186 GACCGTGTCT
1 GACCGTGTCT
15043196 CTGCCTGTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.21, C:0.34, G:0.24, T:0.20
Consensus pattern (30 bp):
GACCGTGTCTTCCACACGGCTGAGACACAT
Found at i:15049308 original size:21 final size:22
Alignment explanation
Indices: 15049258--15049308 Score: 88
Period size: 21 Copynumber: 2.4 Consensus size: 22
15049248 TCATTAAAGA
15049258 ATTAATT-ATCATTAAATCAAG
1 ATTAATTAATCATTAAATCAAG
15049279 ATTAATTAAT-ATTAAATCAAG
1 ATTAATTAATCATTAAATCAAG
15049300 ATTAATTAA
1 ATTAATTAA
15049309 AGTATAAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 27 0.93
22 2 0.07
ACGTcount: A:0.51, C:0.06, G:0.04, T:0.39
Consensus pattern (22 bp):
ATTAATTAATCATTAAATCAAG
Found at i:15051080 original size:30 final size:30
Alignment explanation
Indices: 15051046--15051142 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
15051036 AGCTCACTCC
15051046 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
15051076 TAGCTCAACTTCAGCTTAGGAGTTTAATCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* * *
15051106 CAGCTCAACTTTAGCTCACAAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
15051136 TAGCTCA
1 TAGCTCA
15051143 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:15053848 original size:27 final size:26
Alignment explanation
Indices: 15053818--15053882 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
15053808 GTCAAAATTA
* *
15053818 ACCTTAGGGGTATAACGGTCATTTTGC
1 ACCTTAGGGGTAAAACGGTAATTTT-C
*
15053845 ACC-TAGGGGTAAAATGGTAATTTTC
1 ACCTTAGGGGTAAAACGGTAATTTTC
*
15053870 ATACTTAGGGGTA
1 A-CCTTAGGGGTA
15053883 GTTTAATAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
25 2 0.06
26 19 0.59
27 11 0.34
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (26 bp):
ACCTTAGGGGTAAAACGGTAATTTTC
Found at i:15054145 original size:8 final size:8
Alignment explanation
Indices: 15054130--15054161 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
15054120 TCACAAATGC
15054130 CGGCTTTT
1 CGGCTTTT
*
15054138 CAGCTTTT
1 CGGCTTTT
15054146 CGGCTTTT
1 CGGCTTTT
15054154 CGGCTTTT
1 CGGCTTTT
15054162 GCCGATCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.22, T:0.50
Consensus pattern (8 bp):
CGGCTTTT
Found at i:15056114 original size:46 final size:46
Alignment explanation
Indices: 15056058--15056920 Score: 1527
Period size: 46 Copynumber: 18.7 Consensus size: 46
15056048 TGGTTGAGCA
* *
15056058 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15056104 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15056150 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15056196 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15056242 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15056288 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15056334 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15056380 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15056426 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15056472 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15056518 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15056564 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15056610 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15056656 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15056702 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15056748 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
* * * * *
15056794 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAA--ATG
* * * *
15056839 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
* * *
15056887 -CCTAAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAA-CTCGTTGAGTTGAGTCCGAATTCACTTA
15056921 GGGGCGGGTT
Statistics
Matches: 794, Mismatches: 15, Indels: 16
0.96 0.02 0.02
Matches are distributed among these distances:
43 6 0.01
45 8 0.01
46 742 0.93
47 29 0.04
48 4 0.01
50 5 0.01
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
Found at i:15057182 original size:19 final size:20
Alignment explanation
Indices: 15057145--15057182 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
15057135 ATAAGGTGGT
15057145 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
15057165 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
15057183 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:15064387 original size:46 final size:46
Alignment explanation
Indices: 15064337--15065199 Score: 1561
Period size: 46 Copynumber: 18.7 Consensus size: 46
15064327 TGGTTGAGCA
15064337 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15064383 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15064429 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15064475 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15064521 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15064567 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15064613 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15064659 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15064705 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15064751 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15064797 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15064843 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15064889 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15064935 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15064981 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
15065027 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
* * * * *
15065073 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAA--ATG
* * * *
15065118 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTGTGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
* * *
15065166 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTA
15065200 GGGGCGGGTT
Statistics
Matches: 796, Mismatches: 14, Indels: 14
0.97 0.02 0.02
Matches are distributed among these distances:
43 6 0.01
45 4 0.01
46 748 0.94
47 29 0.04
48 3 0.00
50 6 0.01
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
Found at i:15065484 original size:69 final size:69
Alignment explanation
Indices: 15065373--15065505 Score: 257
Period size: 69 Copynumber: 1.9 Consensus size: 69
15065363 CTTTGTACAG
*
15065373 GTATGTTCTTAACCCTCGGGTTGAAAATAGATACAACAACGATAAGGTGGTAAGATGATGAATGG
1 GTATGTTCTTAACCCTCGGGTTGAAAATAGATACAACAACGATAAAGTGGTAAGATGATGAATGG
15065438 ACAT
66 ACAT
15065442 GTATGTTCTTAACCCTCGGGTTGAAAATAGATACAACAACGATAAAGTGGTAAGATGATGAATG
1 GTATGTTCTTAACCCTCGGGTTGAAAATAGATACAACAACGATAAAGTGGTAAGATGATGAATG
15065506 ATGTTTAAAG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
69 63 1.00
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (69 bp):
GTATGTTCTTAACCCTCGGGTTGAAAATAGATACAACAACGATAAAGTGGTAAGATGATGAATGG
ACAT
Found at i:15066531 original size:57 final size:57
Alignment explanation
Indices: 15066443--15066563 Score: 242
Period size: 57 Copynumber: 2.1 Consensus size: 57
15066433 AACTTGAGAT
15066443 ATGATTTTTCTTGTAACTGTGACGCGAGTAGCTAGAAAGCTGTGAATGTAGAAACAA
1 ATGATTTTTCTTGTAACTGTGACGCGAGTAGCTAGAAAGCTGTGAATGTAGAAACAA
15066500 ATGATTTTTCTTGTAACTGTGACGCGAGTAGCTAGAAAGCTGTGAATGTAGAAACAA
1 ATGATTTTTCTTGTAACTGTGACGCGAGTAGCTAGAAAGCTGTGAATGTAGAAACAA
15066557 ATGATTT
1 ATGATTT
15066564 GAAGTTCTTA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 64 1.00
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (57 bp):
ATGATTTTTCTTGTAACTGTGACGCGAGTAGCTAGAAAGCTGTGAATGTAGAAACAA
Found at i:15068539 original size:32 final size:32
Alignment explanation
Indices: 15068494--15068560 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
15068484 ATGTTGTACA
*
15068494 TTAGAATTGAAAATACTTGAGACTAGGTTACC
1 TTAGAATTAAAAATACTTGAGACTAGGTTACC
15068526 TTAGAATTAAAAATACTTGAGACTAGGTTACC
1 TTAGAATTAAAAATACTTGAGACTAGGTTACC
15068558 TTA
1 TTA
15068561 ATAGTGATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.33
Consensus pattern (32 bp):
TTAGAATTAAAAATACTTGAGACTAGGTTACC
Found at i:15076548 original size:32 final size:32
Alignment explanation
Indices: 15076507--15076573 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
15076497 ATGTTGTACA
15076507 TTAGAATTAAAAATACTTGAGACTAGGTTACC
1 TTAGAATTAAAAATACTTGAGACTAGGTTACC
15076539 TTAGAATTAAAAATACTTGAGACTAGGTTACC
1 TTAGAATTAAAAATACTTGAGACTAGGTTACC
15076571 TTA
1 TTA
15076574 ATAATGATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (32 bp):
TTAGAATTAAAAATACTTGAGACTAGGTTACC
Found at i:15082230 original size:42 final size:43
Alignment explanation
Indices: 15082129--15082287 Score: 145
Period size: 43 Copynumber: 3.7 Consensus size: 43
15082119 AGCTTGTACA
*
15082129 ATGCCAAC-GTCCCAGA-AGTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGTAATCAAATATCG
*
15082172 ATGCCACTATCCCAGACAGGGTCTTACACG-AGATCAAATAT-G
1 ATGCCACTGTCCCAGACAGGGTCTTACACGTA-ATCAAATATCG
* *
15082214 ATGCCGA-TGTCCCAGACATGGTCTTACATGTAAATCATAA-ATCG
1 ATGCC-ACTGTCCCAGACAGGGTCTTACACGT-AATCA-AATATCG
*
15082258 ATGCCAAC-GTCGCAGAC-GTGGTCTTACACG
1 ATGCC-ACTGTCCCAGACAG-GGTCTTACACG
15082288 AAAACACATA
Statistics
Matches: 97, Mismatches: 9, Indels: 19
0.78 0.07 0.15
Matches are distributed among these distances:
42 29 0.30
43 38 0.39
44 30 0.31
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACAGGGTCTTACACGTAATCAAATATCG
Found at i:15088432 original size:48 final size:48
Alignment explanation
Indices: 15088365--15088609 Score: 418
Period size: 48 Copynumber: 5.1 Consensus size: 48
15088355 ACGGAAATTG
*
15088365 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
15088413 ATGTATGAGATAAGCATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
15088461 ATGTATGAGATATGTATATGTGATAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
15088509 ATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* * *
15088557 ATGTATGAGATATGTATATGTGGTAAAGTCGATTGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
15088605 ATGTA
1 ATGTA
15088610 GGCGATGTGT
Statistics
Matches: 187, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 187 1.00
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:15088864 original size:37 final size:37
Alignment explanation
Indices: 15088756--15088864 Score: 157
Period size: 37 Copynumber: 2.9 Consensus size: 37
15088746 GGAAATATAT
*
15088756 TCCGGGTAAGACCCGATGACTAT-GTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACT-TCGTGTGGAGATTTTG
* * *
15088793 TCCGGGTGAGACCCGATGACTACATGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTTCGTGTGGAGATTTTG
*
15088830 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTTCGTGTGGAGATTT
15088865 CATCTAAGCT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTTCGTGTGGAGATTTTG
Found at i:15091988 original size:11 final size:10
Alignment explanation
Indices: 15091949--15091990 Score: 50
Period size: 11 Copynumber: 4.1 Consensus size: 10
15091939 TTCTCAATTC
15091949 ATCA-ACCAA
1 ATCATACCAA
15091958 ATCATACCAA
1 ATCATACCAA
*
15091968 ATCTAAACCAA
1 ATC-ATACCAA
15091979 TATCATACCAA
1 -ATCATACCAA
15091990 A
1 A
15091991 GAATATGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
9 4 0.14
10 9 0.32
11 12 0.43
12 3 0.11
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (10 bp):
ATCATACCAA
Found at i:15092838 original size:42 final size:42
Alignment explanation
Indices: 15092729--15092850 Score: 129
Period size: 43 Copynumber: 2.8 Consensus size: 42
15092719 AGCTCGTACA
* * *
15092729 ATGCCAATGTCCCAGACGAGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGAAG-GGTCTTACACGAAATCAAATATCG
* *
15092772 ATGCCATTGTCCCAGACAGGGTCTTAAACGAAATCAAATA-CG
1 ATGCCAATGTCCCAGA-AGGGTCTTACACGAAATCAAATATCG
* * *
15092814 ATTCCAATGTCCTAGATGTGGTCTTACACGTAAATCA
1 ATGCCAATGTCCCAGAAG-GGTCTTACACG-AAATCA
15092851 TAAGTCGATG
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
41 1 0.02
42 25 0.38
43 39 0.59
44 1 0.02
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGCCAATGTCCCAGAAGGGTCTTACACGAAATCAAATATCG
Found at i:15099593 original size:21 final size:23
Alignment explanation
Indices: 15099552--15099593 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
15099542 TGAAATTCCA
15099552 ACCATTTCATAACCAAAACATAC
1 ACCATTTCATAACCAAAACATAC
*
15099575 ACCATTT-AT-ACCAATACAT
1 ACCATTTCATAACCAAAACAT
15099594 TATCAACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 2 0.11
23 7 0.39
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.26
Consensus pattern (23 bp):
ACCATTTCATAACCAAAACATAC
Found at i:15101986 original size:42 final size:42
Alignment explanation
Indices: 15101901--15101995 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 42
15101891 AGAAAGCTCG
* * *
15101901 TACAATGCCAATGTCCCAGACGTGGTCTTACATGTAACTAAA
1 TACAATGCCACTGTCCCAGACGTGGTCTTACACGAAACTAAA
15101943 TATCAATGCCACTG-CCCAGACAG-GGTCTTACACGAAA-TCAAA
1 TA-CAATGCCACTGTCCCAGAC-GTGGTCTTACACGAAACT-AAA
*
15101985 TACGATGCCAC
1 TACAATGCCAC
15101996 CATCTAGACG
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
41 9 0.20
42 26 0.57
43 11 0.24
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (42 bp):
TACAATGCCACTGTCCCAGACGTGGTCTTACACGAAACTAAA
Found at i:15104530 original size:17 final size:19
Alignment explanation
Indices: 15104508--15104542 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
15104498 GTACTTCAAT
15104508 AATTAAT-TAGG-TAAAAC
1 AATTAATCTAGGCTAAAAC
15104525 AATTAATCTAGGCTAAAA
1 AATTAATCTAGGCTAAAA
15104543 GGAACTCGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 4 0.25
19 5 0.31
ACGTcount: A:0.51, C:0.09, G:0.11, T:0.29
Consensus pattern (19 bp):
AATTAATCTAGGCTAAAAC
Found at i:15106275 original size:31 final size:31
Alignment explanation
Indices: 15106234--15106293 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
15106224 CCCTTATACA
* *
15106234 TGTAATACCCCTTACCCGAGAT-CGTCGCCAG
1 TGTAACACCCCGTACCCGAG-TCCGTCGCCAG
15106265 TGTAACACCCCGTACCCGAGTCCGTCGCC
1 TGTAACACCCCGTACCCGAGTCCGTCGCC
15106294 GGAGTCAGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 1 0.04
31 25 0.96
ACGTcount: A:0.20, C:0.40, G:0.20, T:0.20
Consensus pattern (31 bp):
TGTAACACCCCGTACCCGAGTCCGTCGCCAG
Found at i:15107728 original size:40 final size:40
Alignment explanation
Indices: 15107656--15107840 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
15107646 GCTACTCGTT
* * * *
15107656 CAAATGCCTTTGGGACATAGCCTGG-TTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
15107696 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
15107736 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
15107775 CAAATGCCTTC-GGACCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
15107816 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
15107841 CATCAGTCAA
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 76 0.61
41 13 0.10
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:15107767 original size:79 final size:80
Alignment explanation
Indices: 15107684--15107840 Score: 203
Period size: 79 Copynumber: 2.0 Consensus size: 80
15107674 AGCCTGGTTA
* * *
15107684 TAGTAACTCGTACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTC
1 TAGTAACTCGCACAAATGCCTTC-GGACCTTAACCCGGATATAGTAACTTAGCACAAA-GCCTTC
15107747 GGG-CTTAGCCCGGAAT
64 GGGACTTAGCCCGGAAT
* ** * *
15107763 TAGTATCTCGCACAAATGCCTTCGGACCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGACCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
15107828 GACTTAGCCCGGA
66 GACTTAGCCCGGA
15107841 CATCAGTCAA
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
78 3 0.04
79 45 0.67
80 19 0.28
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGACCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
GACTTAGCCCGGAAT
Found at i:15108045 original size:39 final size:40
Alignment explanation
Indices: 15107928--15108056 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
15107918 GCTACTCGTT
* * * * *
15107928 CAAATGCCTTTGGGACATAGCCTGG-TTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
** *
15107968 CAAATGCCTTCGGGACTTATTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
15108008 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
15108047 CAAATGCCTT
1 CAAATGCCTT
15108057 TGGATCTTAG
Statistics
Matches: 76, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 30 0.39
40 44 0.58
41 2 0.03
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.29
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:15108077 original size:23 final size:23
Alignment explanation
Indices: 15108051--15108097 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
15108041 CTCGCACAAA
*
15108051 TGCCTTTGGATCTTAGTCCGGAT
1 TGCCTTCGGATCTTAGTCCGGAT
15108074 TGCCTTCGGATCTTAGTCCGGAT
1 TGCCTTCGGATCTTAGTCCGGAT
15108097 T
1 T
15108098 TAGTATCTCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.13, C:0.23, G:0.26, T:0.38
Consensus pattern (23 bp):
TGCCTTCGGATCTTAGTCCGGAT
Found at i:15108102 original size:63 final size:62
Alignment explanation
Indices: 15108012--15108136 Score: 205
Period size: 63 Copynumber: 2.0 Consensus size: 62
15108002 CTCGCACCAA
*
15108012 TGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTTGGATCTTAGTCCGGAT
1 TGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
* * *
15108074 TGCCTTCGGATCTTAGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 TGCCTTCGG-GCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
15108137 ATGGTCACTT
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
62 9 0.16
63 49 0.84
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.32
Consensus pattern (62 bp):
TGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
Found at i:15108159 original size:40 final size:40
Alignment explanation
Indices: 15108074--15108175 Score: 120
Period size: 40 Copynumber: 2.5 Consensus size: 40
15108064 TAGTCCGGAT
* *
15108074 TGCCTTCGGATCTTAGTCCGGATTTAGTATCTCGCACAAA
1 TGCCTTCGGATCTTAGTCCGGATATAGTATCTAGCACAAA
*
15108114 TGCCTTCGGATCTTAGTCCGGATATGGTCA-CTTAGCACAAA
1 TGCCTTCGGATCTTAGTCCGGATATAGT-ATC-TAGCACAAA
*
15108155 -GCCTTCGGGA-CTTAGCCCGGA
1 TGCCTTC-GGATCTTAGTCCGGA
15108176 CATCATTCAA
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
40 43 0.78
41 12 0.22
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGATCTTAGTCCGGATATAGTATCTAGCACAAA
Found at i:15108965 original size:62 final size:63
Alignment explanation
Indices: 15108855--15108974 Score: 183
Period size: 66 Copynumber: 1.9 Consensus size: 63
15108845 TGAGATATTG
*
15108855 TATATGTCATACCAATACGTCATGTGCAAACATATATATATATGTGCAAGAGCCGAATTATATA
1 TATATGTCATACCAATACATCATGTGCAAACATATATATATA-GTGCAAGAGCCGAATTATATA
15108919 TATATGTACCATACCAATACATCATGTGC-AA-ATATATATATA-TGCAAGAGCCGAAT
1 TATATGT--CATACCAATACATCATGTGCAAACATATATATATAGTGCAAGAGCCGAAT
15108975 CACAAGGCTG
Statistics
Matches: 53, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
62 14 0.26
64 18 0.34
65 2 0.04
66 19 0.36
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (63 bp):
TATATGTCATACCAATACATCATGTGCAAACATATATATATAGTGCAAGAGCCGAATTATATA
Found at i:15109831 original size:69 final size:69
Alignment explanation
Indices: 15109745--15109884 Score: 271
Period size: 69 Copynumber: 2.0 Consensus size: 69
15109735 TTATCATACT
15109745 TCCCATGAAACACTAACTCAACATGTTTATGACATGTTCTTGCCCATCACACTTGGTCTACCATG
1 TCCCATGAAACACTAACTCAACATGTTTATGACATGTTCTTGCCCATCACACTTGGTCTACCATG
15109810 CTTG
66 CTTG
*
15109814 TCCCATGACACACTAACTCAACATGTTTATGACATGTTCTTGCCCATCACACTTGGTCTACCATG
1 TCCCATGAAACACTAACTCAACATGTTTATGACATGTTCTTGCCCATCACACTTGGTCTACCATG
15109879 CTTG
66 CTTG
15109883 TC
1 TC
15109885 ATGGCCGGCC
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (69 bp):
TCCCATGAAACACTAACTCAACATGTTTATGACATGTTCTTGCCCATCACACTTGGTCTACCATG
CTTG
Found at i:15111891 original size:54 final size:54
Alignment explanation
Indices: 15111799--15111906 Score: 180
Period size: 54 Copynumber: 2.0 Consensus size: 54
15111789 CACATTAGCC
* * *
15111799 TTTCTCGGGTGGTAATCAATGACAAGCTCGTAACCTTTCAACAACTCAAGCCAA
1 TTTCCCGGGTGATAATCAATGACAAGCTCATAACCTTTCAACAACTCAAGCCAA
*
15111853 TTTCCCGGGTGATAATCAATGACAAGCTCATAATCTTTCAACAACTCAAGCCAA
1 TTTCCCGGGTGATAATCAATGACAAGCTCATAACCTTTCAACAACTCAAGCCAA
15111907 CGCCTTTGTC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (54 bp):
TTTCCCGGGTGATAATCAATGACAAGCTCATAACCTTTCAACAACTCAAGCCAA
Found at i:15116518 original size:27 final size:27
Alignment explanation
Indices: 15116426--15116575 Score: 144
Period size: 27 Copynumber: 5.5 Consensus size: 27
15116416 ATATTGAGCC
* *
15116426 CGCACACTCAGTGCTATACA-A-TCAAAT
1 CGCACACTTAGTGC-A-ACATAGTCAATT
* * *
15116453 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCAACATAGTCA-ATT
** *
15116481 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAACATAGTCAATT
* * *
15116508 CGCACACTTAGTGCATCATATTCATTT
1 CGCACACTTAGTGCAACATAGTCAATT
15116535 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCAACATAGTC-AATT
15116562 CGCACACTTAGTGC
1 CGCACACTTAGTGC
15116576 TGTACAATTT
Statistics
Matches: 102, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
25 3 0.03
26 1 0.01
27 75 0.74
28 23 0.23
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCAACATAGTCAATT
Found at i:15119833 original size:40 final size:40
Alignment explanation
Indices: 15119787--15119892 Score: 176
Period size: 40 Copynumber: 2.6 Consensus size: 40
15119777 ATAATAGTTT
*
15119787 GGGCCTTAGCCCATCTCAGTACAGTATCGAATATGCAGTA
1 GGGCCTTAGCCCATCTCAGTACAGTATCAAATATGCAGTA
*
15119827 GGGCCTTAGCCCATCTCAGTACAATATCAAATATGCAGTA
1 GGGCCTTAGCCCATCTCAGTACAGTATCAAATATGCAGTA
*
15119867 GGGCCTTAGCCCATCACAGTATCAGT
1 GGGCCTTAGCCCATCTCAGTA-CAGT
15119893 TTTAGCCATG
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
40 58 0.95
41 3 0.05
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
GGGCCTTAGCCCATCTCAGTACAGTATCAAATATGCAGTA
Found at i:15124077 original size:21 final size:20
Alignment explanation
Indices: 15124037--15124083 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 20
15124027 TTAACGTTAG
*
15124037 TTCTTCTTTCTCATTCTTTTT
1 TTCTTCTTTCT-ATTCTTTTC
15124058 TTCTTCTTTCT-TTACTTTTTC
1 TTCTTCTTTCTATT-C-TTTTC
15124079 TTCTT
1 TTCTT
15124084 TTTTGATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 2 0.09
20 1 0.04
21 20 0.87
ACGTcount: A:0.04, C:0.23, G:0.00, T:0.72
Consensus pattern (20 bp):
TTCTTCTTTCTATTCTTTTC
Found at i:15128307 original size:18 final size:18
Alignment explanation
Indices: 15128284--15128318 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
15128274 TCTTCTTGTC
15128284 TCCTCTGTTTTAACCTTA
1 TCCTCTGTTTTAACCTTA
15128302 TCCTCTGTTTTAACCTT
1 TCCTCTGTTTTAACCTT
15128319 GGAAAAAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.29, G:0.06, T:0.51
Consensus pattern (18 bp):
TCCTCTGTTTTAACCTTA
Found at i:15130126 original size:30 final size:30
Alignment explanation
Indices: 15130090--15130149 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
15130080 TATTTTATTA
15130090 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
* *
15130120 TTAATTTTGTTATTATTTTAGAGGTATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
15130150 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.02, G:0.15, T:0.58
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTG
Found at i:15134124 original size:42 final size:42
Alignment explanation
Indices: 15134077--15134161 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
15134067 TTTTAACAAA
*
15134077 CAAAAATATCCATACTTTTATTTATTATTTTACCATTTTATC
1 CAAAAATATCCATACTTTTACTTATTATTTTACCATTTTATC
15134119 CAAAAATATCCATACTTTTACTTATTATTTTACCATTTTATC
1 CAAAAATATCCATACTTTTACTTATTATTTTACCATTTTATC
15134161 C
1 C
15134162 TTGAAAGTTA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.48
Consensus pattern (42 bp):
CAAAAATATCCATACTTTTACTTATTATTTTACCATTTTATC
Found at i:15135007 original size:199 final size:196
Alignment explanation
Indices: 15134670--15135035 Score: 678
Period size: 199 Copynumber: 1.9 Consensus size: 196
15134660 TTCATAATGG
15134670 GCATGGCTTTATTTTCATTCTGATATAATATATGGAGAAAGCCTTAGCTTTTTAGCTTTCAAACC
1 GCATGGCTTTATTTTCATTCTGATATAATATATGGAGAAAGCCTTAGCTTTTTAGCTTTCAAACC
15134735 AAACCCTATTTTTTTTGCTTCCCTTCTCTACTTCTTTGTTTGAATTTTTACAAGAAGTTATTATT
66 AAACCCTATTTTTTTTGCTTCCCTTCTCTACTTCTTTGTTTGAATTTTTACAAGAAGTTATTATT
15134800 ATGGTTGTTCAATCACAGCTGTATCCTGAAAACTTGGGTTTACTACCTTGGCCCATGTGTGCCTT
131 ATGGTTGTTCAATCACAGCTGTATCCTGAAAACTTGGGTTTACTACCTTGGCCCATGTGTGCCTT
15134865 T
196 T
15134866 GCATGGCTTTATTTTCATTCTGATATAAATATATGGAGAAAGCCTTAGCTTTTTAGCTTTCAAAC
1 GCATGGCTTTATTTTCATTCTGATAT-AATATATGGAGAAAGCCTTAGCTTTTTAGCTTTCAAAC
* *
15134931 CAAACCCCATTTTTTTTTTGCTTCCCTTCTCTGCTTCTTTGTTTGAATTTTTACAAGAAGTTATT
65 CAAA-CCC-TATTTTTTTTGCTTCCCTTCTCTACTTCTTTGTTTGAATTTTTACAAGAAGTTATT
*
15134996 ATTATGGTTGTTCAATCACAGTTGTATCCTGAAAACTTGG
128 ATTATGGTTGTTCAATCACAGCTGTATCCTGAAAACTTGG
15135036 ATGCCACCAA
Statistics
Matches: 164, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
196 26 0.16
197 42 0.26
198 3 0.02
199 93 0.57
ACGTcount: A:0.24, C:0.19, G:0.14, T:0.43
Consensus pattern (196 bp):
GCATGGCTTTATTTTCATTCTGATATAATATATGGAGAAAGCCTTAGCTTTTTAGCTTTCAAACC
AAACCCTATTTTTTTTGCTTCCCTTCTCTACTTCTTTGTTTGAATTTTTACAAGAAGTTATTATT
ATGGTTGTTCAATCACAGCTGTATCCTGAAAACTTGGGTTTACTACCTTGGCCCATGTGTGCCTT
T
Found at i:15138434 original size:30 final size:30
Alignment explanation
Indices: 15138400--15138460 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
15138390 TTCCTGAGCC
15138400 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * *
15138430 TAGGGGCAAAATTGTAATTTTGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
15138460 T
1 T
15138461 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.41, C:0.05, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:15142249 original size:30 final size:30
Alignment explanation
Indices: 15142215--15142301 Score: 140
Period size: 30 Copynumber: 2.9 Consensus size: 30
15142205 CGACNTAAAT
*
15142215 ATAAAAAAATACATGTAGTGTATTTTCA-AA
1 ATAAAAAAATATATGTAGTGTATTTT-AGAA
*
15142245 ATAAAAAAATATATGTAGTGTATTCTAGAA
1 ATAAAAAAATATATGTAGTGTATTTTAGAA
15142275 ATAAAAAAATATATGTAGTGTATTTTA
1 ATAAAAAAATATATGTAGTGTATTTTA
15142302 TTAAATGAAT
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
29 1 0.02
30 52 0.98
ACGTcount: A:0.49, C:0.03, G:0.11, T:0.36
Consensus pattern (30 bp):
ATAAAAAAATATATGTAGTGTATTTTAGAA
Found at i:15144271 original size:58 final size:57
Alignment explanation
Indices: 15144209--15144326 Score: 132
Period size: 57 Copynumber: 2.1 Consensus size: 57
15144199 GCCCAGGTGA
* *
15144209 GTAATCCCAATATAATCCCTCTC-GAGTATATGTTACGAT-TAGGATTTAGCCTGGACTG
1 GTAATCCCAAT-TAA-CCCTCTCTGAGCATATGTTAC-ATAAAGGATTTAGCCTGGACTG
* * * * *
15144267 GTAATCCTAATTGAGCTTTTCTGAGCATATGTTACATAAAGGATTTAGCCTGGACTG
1 GTAATCCCAATTAACCCTCTCTGAGCATATGTTACATAAAGGATTTAGCCTGGACTG
15144324 GTA
1 GTA
15144327 GTCCTATAAT
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
56 6 0.12
57 35 0.69
58 10 0.20
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (57 bp):
GTAATCCCAATTAACCCTCTCTGAGCATATGTTACATAAAGGATTTAGCCTGGACTG
Found at i:15148189 original size:27 final size:27
Alignment explanation
Indices: 15148176--15149047 Score: 1613
Period size: 27 Copynumber: 32.3 Consensus size: 27
15148166 GTGACAAAGT
* *
15148176 CACCAGATACAGATAATCGTGGCAGAGC
1 CACCAGAT-CAGATATTTGTGGCAGAGC
* *
15148204 CACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148231 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
*
15148258 CACCAGATCAGATATTTGTGGCATAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
* * **
15148285 CACCAGAAC-GCT-TCCTCCTGGCAGAGC
1 CACCAGATCAGATAT--TTGTGGCAGAGC
15148312 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148339 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148366 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148393 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148420 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148447 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148474 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148501 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148528 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148555 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148582 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148609 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148636 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148663 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148690 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148717 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148744 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148771 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148798 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148825 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148852 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148879 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148906 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148933 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148960 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15148987 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
*
15149014 CACCAGATCAGATATTTGTGGCATAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
15149041 CACCAGA
1 CACCAGA
15149048 ACGCTTCCTC
Statistics
Matches: 823, Mismatches: 17, Indels: 9
0.97 0.02 0.01
Matches are distributed among these distances:
25 1 0.00
26 2 0.00
27 810 0.98
28 9 0.01
29 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.22
Consensus pattern (27 bp):
CACCAGATCAGATATTTGTGGCAGAGC
Done.