Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56482370
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1659275 characters in sequence are not A, C, G, or T
File 48 of 172
Found at i:15548192 original size:27 final size:27
Alignment explanation
Indices: 15548161--15548338 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
15548151 TAAATTGTAC
15548161 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
15548188 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
15548214 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
15548242 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
15548270 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
15548297 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
15548324 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
15548339 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:15548275 original size:82 final size:81
Alignment explanation
Indices: 15548162--15548317 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
15548152 AAATTGTACA
* *
15548162 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
15548226 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
15548243 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
15548308 TGCGAGTTGA
65 TGCGAATTGA
15548318 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:15548329 original size:82 final size:81
Alignment explanation
Indices: 15548158--15548338 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
15548148 GATTAAATTG
* *
15548158 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
15548223 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
15548239 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
15548303 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
15548321 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
15548339 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:15551843 original size:28 final size:29
Alignment explanation
Indices: 15551807--15551967 Score: 225
Period size: 29 Copynumber: 5.6 Consensus size: 29
15551797 GTATTGGTGC
**
15551807 CCATCGAATATGAAAAGGGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTGACGA
* **
15551836 -CATCGAATATGAAAAAGGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTGACGA
*
15551864 CCATCGAATATGAAAAAGGGATGGTGACAA
1 CCATCGAATATG-AAAAGGGATGGTGACGA
15551894 CCATCGAATATGAAAAGGGATGGTGACGA
1 CCATCGAATATGAAAAGGGATGGTGACGA
* *
15551923 CCATTGAATATGAAAAGGGATGGAGACGA
1 CCATCGAATATGAAAAGGGATGGTGACGA
*
15551952 CCATCGAATATAAAAA
1 CCATCGAATATGAAAA
15551968 AAAGATGGCT
Statistics
Matches: 120, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
28 27 0.22
29 68 0.57
30 25 0.21
ACGTcount: A:0.41, C:0.13, G:0.26, T:0.20
Consensus pattern (29 bp):
CCATCGAATATGAAAAGGGATGGTGACGA
Found at i:15551915 original size:59 final size:58
Alignment explanation
Indices: 15551807--15551986 Score: 236
Period size: 59 Copynumber: 3.1 Consensus size: 58
15551797 GTATTGGTGC
**
15551807 CCATCGAATATGAAAAGGGATGGTTTCGA-CATCGAATATGAAAAAGGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTGACGACCATCGAATATGAAAAAGGATGGTTTCGA
* * **
15551864 CCATCGAATATGAAAAAGGGATGGTGACAACCATCGAATATGAAAAGGGATGGTGACGA
1 CCATCGAATATG-AAAAGGGATGGTGACGACCATCGAATATGAAAAAGGATGGTTTCGA
* * * * *
15551923 CCATTGAATATGAAAAGGGATGGAGACGACCATCGAATATAAAAAAAAGATGGCTTCGA
1 CCATCGAATATGAAAAGGGATGGTGACGACCATCGAATAT-GAAAAAGGATGGTTTCGA
15551982 CCATC
1 CCATC
15551987 ATTTAGCACA
Statistics
Matches: 104, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
57 12 0.12
58 40 0.38
59 52 0.50
ACGTcount: A:0.40, C:0.14, G:0.26, T:0.20
Consensus pattern (58 bp):
CCATCGAATATGAAAAGGGATGGTGACGACCATCGAATATGAAAAAGGATGGTTTCGA
Found at i:15551986 original size:88 final size:87
Alignment explanation
Indices: 15551807--15551975 Score: 239
Period size: 88 Copynumber: 1.9 Consensus size: 87
15551797 GTATTGGTGC
** ***
15551807 CCATCGAATATGAAAAGGGATGGTTTCGACATCGAATATGAAAAAGGATGGTTTCGACCATCGAA
1 CCATCGAATATGAAAAGGGATGGTGACGACATCGAATATGAAAAAGGATGGAGACGACCATCGAA
* **
15551872 TATGAAAAAGGGATGGTGACAA
66 TATAAAAAAAAGATGGTGACAA
* *
15551894 CCATCGAATATGAAAAGGGATGGTGACGACCATTGAATATGAAAAGGGATGGAGACGACCATCGA
1 CCATCGAATATGAAAAGGGATGGTGACGA-CATCGAATATGAAAAAGGATGGAGACGACCATCGA
15551959 ATATAAAAAAAAGATGG
65 ATATAAAAAAAAGATGG
15551976 CTTCGACCAT
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
87 27 0.38
88 44 0.62
ACGTcount: A:0.41, C:0.12, G:0.27, T:0.20
Consensus pattern (87 bp):
CCATCGAATATGAAAAGGGATGGTGACGACATCGAATATGAAAAAGGATGGAGACGACCATCGAA
TATAAAAAAAAGATGGTGACAA
Found at i:15567273 original size:56 final size:56
Alignment explanation
Indices: 15567187--15567338 Score: 304
Period size: 56 Copynumber: 2.7 Consensus size: 56
15567177 NNNNNNNNNN
15567187 TTCCATTAACACAACATGTTTCATGACATGTTTTGCCCATGCTTCTTATTTTATTT
1 TTCCATTAACACAACATGTTTCATGACATGTTTTGCCCATGCTTCTTATTTTATTT
15567243 TTCCATTAACACAACATGTTTCATGACATGTTTTGCCCATGCTTCTTATTTTATTT
1 TTCCATTAACACAACATGTTTCATGACATGTTTTGCCCATGCTTCTTATTTTATTT
15567299 TTCCATTAACACAACATGTTTCATGACATGTTTTGCCCAT
1 TTCCATTAACACAACATGTTTCATGACATGTTTTGCCCAT
15567339 CATCCCTTGT
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 96 1.00
ACGTcount: A:0.24, C:0.22, G:0.09, T:0.44
Consensus pattern (56 bp):
TTCCATTAACACAACATGTTTCATGACATGTTTTGCCCATGCTTCTTATTTTATTT
Found at i:15571976 original size:20 final size:21
Alignment explanation
Indices: 15571945--15571983 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
15571935 TTTATGGTTT
15571945 TAAATAATTTTTGGGTAAAAA
1 TAAATAATTTTTGGGTAAAAA
*
15571966 TAAAT-ATTTTTGGTTAAA
1 TAAATAATTTTTGGGTAAA
15571984 TTGGAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.44
Consensus pattern (21 bp):
TAAATAATTTTTGGGTAAAAA
Found at i:15595907 original size:20 final size:20
Alignment explanation
Indices: 15595878--15595979 Score: 89
Period size: 20 Copynumber: 5.1 Consensus size: 20
15595868 ATAGATGTAT
*
15595878 AACAGTGGCACCAAAGTGCA
1 AACAGGGGCACCAAAGTGCA
* **
15595898 GACAGGGGCA-CAAATGTATA
1 AACAGGGGCACCAAA-GTGCA
* * *
15595918 AACAGGGACACCAAAATGTA
1 AACAGGGGCACCAAAGTGCA
* *
15595938 TATAGGGGCACCAAAGTGCA
1 AACAGGGGCACCAAAGTGCA
* *
15595958 AACAGAGGCACCGAAGTGCA
1 AACAGGGGCACCAAAGTGCA
15595978 AA
1 AA
15595980 TCCCGTACAA
Statistics
Matches: 63, Mismatches: 17, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
19 4 0.06
20 55 0.87
21 4 0.06
ACGTcount: A:0.42, C:0.21, G:0.26, T:0.11
Consensus pattern (20 bp):
AACAGGGGCACCAAAGTGCA
Found at i:15599184 original size:20 final size:20
Alignment explanation
Indices: 15599155--15599256 Score: 89
Period size: 20 Copynumber: 5.1 Consensus size: 20
15599145 ATAGATGTAT
*
15599155 AACAGTGGCACCAAAGTGCA
1 AACAGGGGCACCAAAGTGCA
* **
15599175 GACAGGGGCA-CAAATGTATA
1 AACAGGGGCACCAAA-GTGCA
* * *
15599195 AACAGGGACACCAAAATGTA
1 AACAGGGGCACCAAAGTGCA
* *
15599215 TATAGGGGCACCAAAGTGCA
1 AACAGGGGCACCAAAGTGCA
* *
15599235 AACAGAGGCACCGAAGTGCA
1 AACAGGGGCACCAAAGTGCA
15599255 AA
1 AA
15599257 TCCCGTACAA
Statistics
Matches: 63, Mismatches: 17, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
19 4 0.06
20 55 0.87
21 4 0.06
ACGTcount: A:0.42, C:0.21, G:0.26, T:0.11
Consensus pattern (20 bp):
AACAGGGGCACCAAAGTGCA
Found at i:15602775 original size:40 final size:40
Alignment explanation
Indices: 15602724--15602864 Score: 165
Period size: 40 Copynumber: 3.5 Consensus size: 40
15602714 CGAATAATGA
* * *
15602724 TGAATTACACATACGTGCCCTTATTGCACTTCAGTACCCC
1 TGAATTGCACATACATGCCCTTATTGAACTTCAGTACCCC
* * * * **
15602764 TGCATTGCACATACGTGCCCCTGTTGAACTTTGGTACCCC
1 TGAATTGCACATACATGCCCTTATTGAACTTCAGTACCCC
* * *
15602804 TGAATTACACATACATGCCCTTGTTTGTACTTCAGTACCCC
1 TGAATTGCACATACATGCCCTT-ATTGAACTTCAGTACCCC
15602845 TGAATTGCACATACATGCCC
1 TGAATTGCACATACATGCCC
15602865 CTGTTTGTAT
Statistics
Matches: 84, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
40 51 0.61
41 33 0.39
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.30
Consensus pattern (40 bp):
TGAATTGCACATACATGCCCTTATTGAACTTCAGTACCCC
Found at i:15602784 original size:21 final size:21
Alignment explanation
Indices: 15602731--15602786 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
15602721 TGATGAATTA
*
15602731 CACATACGTG-CCCT-TATTG
1 CACATACGTGCCCCTGCATTG
* *
15602750 CAC-TTCAGTACCCCTGCATTG
1 CACATAC-GTGCCCCTGCATTG
15602771 CACATACGTGCCCCTG
1 CACATACGTGCCCCTG
15602787 TTGAACTTTG
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
18 2 0.07
19 5 0.18
20 4 0.14
21 15 0.54
22 2 0.07
ACGTcount: A:0.20, C:0.38, G:0.16, T:0.27
Consensus pattern (21 bp):
CACATACGTGCCCCTGCATTG
Found at i:15602849 original size:41 final size:41
Alignment explanation
Indices: 15602724--15603010 Score: 310
Period size: 41 Copynumber: 7.0 Consensus size: 41
15602714 CGAATAATGA
* * *
15602724 TGAATTACACATACGTG-CCCT-TATTGCACTTCAGTACCCC
1 TGAATTGCACATACGTGCCCCTGT-TTGTACTTCGGTACCCC
* * *
15602764 TGCATTGCACATACGTGCCCCTG-TTGAACTTTGGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * *
15602804 TGAATTACACATACATGCCCTTGTTTGTACTTCAGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * *
15602845 TGAATTGCACATACATGCCCCTGTTTGTATTTTGGTACCCT
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * *
15602886 TGAATTACACATACCTGCCCCTGTTTGTACTTCGATACCCT
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * * * *
15602927 TGAAATGCACTTAGGTGCCCCTGTTTGTACTCCGATACCCT
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* *
15602968 TGAAATGCACAGACGTGCCCCTGTTTGTACTTCGGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
15603009 TG
1 TG
15603011 GATGTACATT
Statistics
Matches: 209, Mismatches: 35, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
40 48 0.23
41 161 0.77
ACGTcount: A:0.21, C:0.30, G:0.17, T:0.32
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
Found at i:15602865 original size:21 final size:21
Alignment explanation
Indices: 15602800--15602867 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
15602790 AACTTTGGTA
*
15602800 CCCCTGAATTACACATACATG
1 CCCCTGAATTGCACATACATG
* * * * *
15602821 CCCTTG-TTTGTAC-TTCAGTA
1 CCCCTGAATTGCACATACA-TG
15602841 CCCCTGAATTGCACATACATG
1 CCCCTGAATTGCACATACATG
15602862 CCCCTG
1 CCCCTG
15602868 TTTGTATTTT
Statistics
Matches: 33, Mismatches: 11, Indels: 6
0.66 0.22 0.12
Matches are distributed among these distances:
19 3 0.09
20 10 0.30
21 17 0.52
22 3 0.09
ACGTcount: A:0.24, C:0.34, G:0.13, T:0.29
Consensus pattern (21 bp):
CCCCTGAATTGCACATACATG
Found at i:15602913 original size:82 final size:82
Alignment explanation
Indices: 15602724--15603010 Score: 348
Period size: 82 Copynumber: 3.5 Consensus size: 82
15602714 CGAATAATGA
* *
15602724 TGAATTACACATACGTG-CCCT-TATTGCACTTCAGTACCCCTGCATTGCACATACGTGCCCCTG
1 TGAATTACACATACGTGCCCCTGT-TTGTACTTCAGTACCCCTGAATTGCACATACGTGCCCCTG
* *
15602787 -TTGAACTTTGGTACCCC
65 TTTGTACTTTGGTACCCT
* * *
15602804 TGAATTACACATACATGCCCTTGTTTGTACTTCAGTACCCCTGAATTGCACATACATGCCCCTGT
1 TGAATTACACATACGTGCCCCTGTTTGTACTTCAGTACCCCTGAATTGCACATACGTGCCCCTGT
*
15602869 TTGTATTTTGGTACCCT
66 TTGTACTTTGGTACCCT
* * * * *
15602886 TGAATTACACATACCTGCCCCTGTTTGTACTTC-GATACCCTTGAAATGCACTTAGGTGCCCCTG
1 TGAATTACACATACGTGCCCCTGTTTGTACTTCAG-TACCCCTGAATTGCACATACGTGCCCCTG
** *
15602950 TTTGTACTCCGATACCCT
65 TTTGTACTTTGGTACCCT
* * * *
15602968 TGAAATGCACAGACGTGCCCCTGTTTGTACTTCGGTACCCCTG
1 TGAATTACACATACGTGCCCCTGTTTGTACTTCAGTACCCCTG
15603011 GATGTACATT
Statistics
Matches: 178, Mismatches: 24, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
80 16 0.09
81 41 0.23
82 120 0.67
83 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.17, T:0.32
Consensus pattern (82 bp):
TGAATTACACATACGTGCCCCTGTTTGTACTTCAGTACCCCTGAATTGCACATACGTGCCCCTGT
TTGTACTTTGGTACCCT
Found at i:15603570 original size:27 final size:27
Alignment explanation
Indices: 15603540--15603653 Score: 115
Period size: 27 Copynumber: 4.2 Consensus size: 27
15603530 GGTCAAATTT
*
15603540 AAATGACCGAAATACTACC-AAAGGGTA
1 AAATGACCGAAATAC-CCCTAAAGGGTA
* * *
15603567 AAATTATCGAAATACCCCTGAAA-GATA
1 AAATGACCGAAATACCCCT-AAAGGGTA
*
15603594 AAATGATCGAAATACCCCTAAAGGGTA
1 AAATGACCGAAATACCCCTAAAGGGTA
** * *
15603621 AAATGACTAAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCTAAAGGGTA
15603648 AAATGA
1 AAATGA
15603654 TTGTTATACC
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
26 5 0.07
27 65 0.89
28 3 0.04
ACGTcount: A:0.47, C:0.18, G:0.16, T:0.18
Consensus pattern (27 bp):
AAATGACCGAAATACCCCTAAAGGGTA
Found at i:15603826 original size:26 final size:26
Alignment explanation
Indices: 15603797--15603848 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15603787 TTGCCACATA
15603797 TACTGTTACTAGCAGCTTTGCTGCGT
1 TACTGTTACTAGCAGCTTTGCTGCGT
*
15603823 TACTGTTACTGGCAGCTTTGCTGCGT
1 TACTGTTACTAGCAGCTTTGCTGCGT
15603849 CATTATTACT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.25, T:0.38
Consensus pattern (26 bp):
TACTGTTACTAGCAGCTTTGCTGCGT
Found at i:15603857 original size:26 final size:26
Alignment explanation
Indices: 15603802--15603867 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
15603792 ACATATACTG
* *
15603802 TTACTAGCAGCTTTGCTGCGTTACTG
1 TTACTAGCAGCTTTGCTGCGTCACTA
* *
15603828 TTACTGGCAGCTTTGCTGCGTCATTA
1 TTACTAGCAGCTTTGCTGCGTCACTA
* *
15603854 TTACTTGTAGCTTT
1 TTACTAGCAGCTTT
15603868 ATTGCGATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.15, C:0.21, G:0.21, T:0.42
Consensus pattern (26 bp):
TTACTAGCAGCTTTGCTGCGTCACTA
Found at i:15604019 original size:28 final size:28
Alignment explanation
Indices: 15603978--15604073 Score: 113
Period size: 28 Copynumber: 3.4 Consensus size: 28
15603968 ACTGCATTGT
15603978 ACTGATTACTGTATTGGGCTAAGGCCCAC
1 ACTG-TTACTGTATTGGGCTAAGGCCCAC
15604007 ACTGTTACTGTATTGGGCTAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
* * * *
15604035 AGACTATTGCTGTAATGTGCTAAGGCCCAC
1 --ACTGTTACTGTATTGGGCTAAGGCCCAC
*
15604065 ATTG-TACTG
1 ACTGTTACTG
15604074 CTACTGAATA
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
27 4 0.07
28 26 0.45
29 4 0.07
30 24 0.41
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (28 bp):
ACTGTTACTGTATTGGGCTAAGGCCCAC
Found at i:15604057 original size:30 final size:29
Alignment explanation
Indices: 15603982--15604065 Score: 116
Period size: 30 Copynumber: 2.9 Consensus size: 29
15603972 CATTGTACTG
15603982 ATTACTGTATTGGGCTAAGGCCCAC-ACT
1 ATTACTGTATTGGGCTAAGGCCCACAACT
*
15604010 GTTACTGTATTGGGCTAAGGCCCACAGACT
1 ATTACTGTATTGGGCTAAGGCCCACA-ACT
* * *
15604040 ATTGCTGTAATGTGCTAAGGCCCACA
1 ATTACTGTATTGGGCTAAGGCCCACA
15604066 TTGTACTGCT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
28 24 0.49
30 25 0.51
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (29 bp):
ATTACTGTATTGGGCTAAGGCCCACAACT
Found at i:15605682 original size:24 final size:24
Alignment explanation
Indices: 15605634--15605680 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
15605624 ACTAGTCATA
*
15605634 GAGAGAATTGAGGAGGGATATTTG
1 GAGAGAATTGAGGAGGAATATTTG
*
15605658 GAGAGATTTGAGGAGAGAATATT
1 GAGAGAATTGAGGAG-GAATATT
15605681 GGGATTTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.36, C:0.00, G:0.38, T:0.26
Consensus pattern (24 bp):
GAGAGAATTGAGGAGGAATATTTG
Found at i:15606392 original size:27 final size:27
Alignment explanation
Indices: 15606312--15606668 Score: 300
Period size: 27 Copynumber: 13.3 Consensus size: 27
15606302 CGAGGCCAAT
* * *
15606312 AAATGATCGAATTACCCC-CATAGGATA
1 AAATGATCGAAATACCCCTGA-AGGGTA
* *
15606339 AAATGA-CCAAATTACCCC-CACAGGGTA
1 AAATGATCGAAA-TACCCCTGA-AGGGTA
* * *
15606366 AAATGACCGAAATACACCTGAAAGGTA
1 AAATGATCGAAATACCCCTGAAGGGTA
* * * *
15606393 AAATAAAT-AAAATACCCCCGAAGGGCA
1 AAAT-GATCGAAATACCCCTGAAGGGTA
*
15606420 AAGTGATCGAAATACCCCTGAAGGGTA
1 AAATGATCGAAATACCCCTGAAGGGTA
* * *
15606447 AAATGACCAAAATGCCCCTGAAGGGTA
1 AAATGATCGAAATACCCCTGAAGGGTA
** *
15606474 AAATGATCGAAATACCTTTGATGGGTA
1 AAATGATCGAAATACCCCTGAAGGGTA
* *
15606501 AAATGATCGAAATACCCTTGATGGGT-
1 AAATGATCGAAATACCCCTGAAGGGTA
* *
15606527 AAATGA-CTAAAATACCCTTGAAGGGTA
1 AAATGATC-GAAATACCCCTGAAGGGTA
* * *
15606554 AAATGGTTGAAATA-CTCTCGAAGGGTA
1 AAATGATCGAAATACCCCT-GAAGGGTA
*
15606581 AAATGATCGAAATACCCCCGAAGGGTA
1 AAATGATCGAAATACCCCTGAAGGGTA
* *
15606608 AAATGATCGAAATACCCCTAAATGGTA
1 AAATGATCGAAATACCCCTGAAGGGTA
* *
15606635 AAATGA-CTAAAATACCCC-CATAGGGTA
1 AAATGATC-GAAATACCCCTGA-AGGGTA
15606662 AAATGAT
1 AAATGAT
15606669 TGTTATACCC
Statistics
Matches: 269, Mismatches: 48, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
25 1 0.00
26 31 0.12
27 229 0.85
28 8 0.03
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.20
Consensus pattern (27 bp):
AAATGATCGAAATACCCCTGAAGGGTA
Found at i:15606872 original size:26 final size:26
Alignment explanation
Indices: 15606843--15606919 Score: 91
Period size: 26 Copynumber: 3.0 Consensus size: 26
15606833 CTGCCACATA
*
15606843 TACTGTTACTGGCAGCTTTGTTGCGT
1 TACTGTTACTGGCAGCTTTGCTGCGT
*
15606869 TACTGTTATTGGCAGCTTTGCTGCGT
1 TACTGTTACTGGCAGCTTTGCTGCGT
* * * * *
15606895 CATTATTACTGGCAGTTTTTCTGCG
1 TACTGTTACTGGCAGCTTTGCTGCG
15606920 ATATTGGTGT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.13, C:0.19, G:0.25, T:0.43
Consensus pattern (26 bp):
TACTGTTACTGGCAGCTTTGCTGCGT
Found at i:15607079 original size:30 final size:32
Alignment explanation
Indices: 15607030--15607114 Score: 97
Period size: 33 Copynumber: 2.7 Consensus size: 32
15607020 ATTGTTCTGA
*
15607030 TTACTGTATTGGG-TAAGGCCCACA-G-ACTG
1 TTACTGTAATGGGCTAAGGCCCACACGTACTG
15607059 TTACTGTAATGGGCTAAGGCCCACACTGTACTG
1 TTACTGTAATGGGCTAAGGCCCACAC-GTACTG
* *
15607092 CTACTG-AATAGGGCTCAGGCCCA
1 TTACTGTAAT-GGGCTAAGGCCCA
15607115 GACTTTTACT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
29 12 0.25
30 11 0.23
32 4 0.08
33 21 0.44
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (32 bp):
TTACTGTAATGGGCTAAGGCCCACACGTACTG
Found at i:15609342 original size:16 final size:16
Alignment explanation
Indices: 15609321--15609352 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
15609311 AGCAGCATTA
15609321 AAGTTATGGCAATTTG
1 AAGTTATGGCAATTTG
*
15609337 AAGTTATGGGAATTTG
1 AAGTTATGGCAATTTG
15609353 TAGAACCTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.03, G:0.28, T:0.38
Consensus pattern (16 bp):
AAGTTATGGCAATTTG
Found at i:15613094 original size:58 final size:58
Alignment explanation
Indices: 15613014--15613228 Score: 211
Period size: 59 Copynumber: 3.7 Consensus size: 58
15613004 CAAAAAGAAA
** * *
15613014 GCCTTTGTGGAAAATCTTTGAAAGGAAAG-CTGTT-TGGCCAGTACTGAAAGAAAATGAT
1 GCCTTTGTATAAAATC-TTGAAAGGAAAGCCT-TTGTGGCAAGTACTAAAAGAAAATGAT
* * ** *
15613072 GCCTTTGTCTAAAATCTCTGAAAGGAAAGCCTTTGTAGTGAGTACTAAAAGAAAAGGAT
1 GCCTTTGTATAAAATCT-TGAAAGGAAAGCCTTTGTGGCAAGTACTAAAAGAAAATGAT
** *
15613131 GCCTTCATATAAAATCTTTAATAGGAAAGCCTTTGTGGCAAGTACTAAAAGAAAATGAT
1 GCCTTTGTATAAAATCTTGAA-AGGAAAGCCTTTGTGGCAAGTACTAAAAGAAAATGAT
** * *
15613190 GCCTTTGCT-GCAAATCCTTGAAGGGAAAGCCTTCGTGGC
1 GCCTTTG-TATAAAAT-CTTGAAAGGAAAGCCTTTGTGGC
15613229 GACCTCTATT
Statistics
Matches: 129, Mismatches: 22, Indels: 11
0.80 0.14 0.07
Matches are distributed among these distances:
57 1 0.01
58 30 0.23
59 92 0.71
60 6 0.05
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.27
Consensus pattern (58 bp):
GCCTTTGTATAAAATCTTGAAAGGAAAGCCTTTGTGGCAAGTACTAAAAGAAAATGAT
Found at i:15616075 original size:21 final size:21
Alignment explanation
Indices: 15616050--15616093 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
15616040 AGTAGATAGT
15616050 TTAAAGGACCAAATAATATAA
1 TTAAAGGACCAAATAATATAA
15616071 TTAAAGGACCAAATAATATAA
1 TTAAAGGACCAAATAATATAA
15616092 TT
1 TT
15616094 TAACCACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.55, C:0.09, G:0.09, T:0.27
Consensus pattern (21 bp):
TTAAAGGACCAAATAATATAA
Found at i:15640758 original size:36 final size:36
Alignment explanation
Indices: 15640718--15640789 Score: 83
Period size: 36 Copynumber: 2.0 Consensus size: 36
15640708 TAATAGCACA
* * *
15640718 ACATAATCT-CTATTACATGGCATGAATAACATACCC
1 ACAT-ATCTACTATCACATGGCATGAACAACACACCC
* *
15640754 ACATATTTACTGTCACATGGCATGAACAACACACCC
1 ACATATCTACTATCACATGGCATGAACAACACACCC
15640790 TCATTTTCAC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
35 3 0.10
36 27 0.90
ACGTcount: A:0.38, C:0.28, G:0.10, T:0.25
Consensus pattern (36 bp):
ACATATCTACTATCACATGGCATGAACAACACACCC
Found at i:15640806 original size:36 final size:36
Alignment explanation
Indices: 15640732--15640807 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
15640722 AATCTCTATT
* *
15640732 ACATGGCATGAATAACATACCCACATATTTACTGTC
1 ACATGGCATGAACAACACACCCACATATTTACTGTC
* *
15640768 ACATGGCATGAACAACACACCCTCAT-TTTCACTTTC
1 ACATGGCATGAACAACACACCCACATATTT-ACTGTC
15640804 ACAT
1 ACAT
15640808 TAGCCATCAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
35 3 0.09
36 32 0.91
ACGTcount: A:0.34, C:0.29, G:0.09, T:0.28
Consensus pattern (36 bp):
ACATGGCATGAACAACACACCCACATATTTACTGTC
Found at i:15641605 original size:11 final size:12
Alignment explanation
Indices: 15641580--15641608 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
15641570 AATAACATTT
15641580 AAAACTATTAGA
1 AAAACTATTAGA
15641592 AAAACTATTA-A
1 AAAACTATTAGA
15641603 AAAACT
1 AAAACT
15641609 TTGATGCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 7 0.41
12 10 0.59
ACGTcount: A:0.62, C:0.10, G:0.03, T:0.24
Consensus pattern (12 bp):
AAAACTATTAGA
Found at i:15647561 original size:51 final size:51
Alignment explanation
Indices: 15647426--15647618 Score: 169
Period size: 51 Copynumber: 3.8 Consensus size: 51
15647416 TGAAAGTGAA
* * * * * *
15647426 AGTGATGGTCACGTGTGTAGTATTATATGCAGGCTACTACGTGTACC--AT
1 AGTGATGATCACGTGTGTAGTACTATGTGAAGGCTACTATGCGTACCGGAT
* * *** *
15647475 AATGATAGGTCGTATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGAT
1 AGTGAT-GATCACGTGTGTAGTACTATGTGAAGGCTACTATGCGTACCGGAT
* * * *
15647527 AGCT-TTGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGAT
1 AG-TGATGATCACGTGTGTAGTACTATGTGAAGGCTACTATGCGTACCGGAT
* *
15647578 AGTGATGGTCACGAGTGTAGTACTATGTGCAA-GCTACTATG
1 AGTGATGATCACGTGTGTAGTACTATGTG-AAGGCTACTATG
15647619 TGAACCAGTA
Statistics
Matches: 116, Mismatches: 22, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
49 5 0.04
50 35 0.30
51 69 0.59
52 6 0.05
53 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.32
Consensus pattern (51 bp):
AGTGATGATCACGTGTGTAGTACTATGTGAAGGCTACTATGCGTACCGGAT
Found at i:15647564 original size:101 final size:101
Alignment explanation
Indices: 15647434--15647618 Score: 259
Period size: 101 Copynumber: 1.8 Consensus size: 101
15647424 AAAGTGATGG
* *
15647434 TCACGTGTGTAGTATTATATGCAGGCTACTACGTGTA-C-CATAATGATAGGT-CGTATGTGTAG
1 TCACGTGTGTAGTACTATATGAAGGCTACTACGTGTATCGCATAATGAT-GGTACG-A-GTGTAG
*
15647496 TACTATGTGCAGGCTACTATGCGTACCGGATAGCTTTGA
63 TACTATGTGCAAGCTACTATGCGTACCGGATAGCTTTGA
* * *
15647535 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGATAGTGATGGTCACGAGTGTAGTA
1 TCACGTGTGTAGTACTATATGAAGGCTACTACGTGTATCGCATAATGATGGT-ACGAGTGTAGTA
15647600 CTATGTGCAAGCTACTATG
65 CTATGTGCAAGCTACTATG
15647619 TGAACCAGTA
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
101 34 0.46
102 30 0.41
103 8 0.11
104 2 0.03
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATATGAAGGCTACTACGTGTATCGCATAATGATGGTACGAGTGTAGTAC
TATGTGCAAGCTACTATGCGTACCGGATAGCTTTGA
Found at i:15647865 original size:16 final size:16
Alignment explanation
Indices: 15647844--15647875 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
15647834 TGATTGAAAC
*
15647844 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
15647860 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
15647876 GCAACAAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:15656407 original size:21 final size:19
Alignment explanation
Indices: 15656334--15656408 Score: 62
Period size: 21 Copynumber: 3.7 Consensus size: 19
15656324 GAGAAACGAA
15656334 AAAAAGAAATGAAAGAAAAAG
1 AAAAAGAAATG--AGAAAAAG
* *
15656355 AATAAGAAAT-CGAAAAAG
1 AAAAAGAAATGAGAAAAAG
* *
15656373 AAAATGAGAGTGAGAAAAAG
1 AAAAAGA-AATGAGAAAAAG
15656393 AAAAAAGAAATTGAGA
1 -AAAAAGAAA-TGAGA
15656409 TTGAAAAAGG
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
18 12 0.29
19 2 0.05
20 8 0.19
21 20 0.48
ACGTcount: A:0.68, C:0.01, G:0.21, T:0.09
Consensus pattern (19 bp):
AAAAAGAAATGAGAAAAAG
Found at i:15656415 original size:45 final size:45
Alignment explanation
Indices: 15656366--15656451 Score: 111
Period size: 45 Copynumber: 1.9 Consensus size: 45
15656356 ATAAGAAATC
*
15656366 GAAAAAGAAAATG-AGAGTGAGAAAAAGAAAAAAGAAATTGAGATT
1 GAAAAAGAAAATGAAAAG-GAGAAAAAGAAAAAAGAAATTGAGATT
* * * *
15656411 GAAAAAGGAAGTGAAAAGGAGAAAATGGAAAAAGAAATTGA
1 GAAAAAGAAAATGAAAAGGAGAAAAAGAAAAAAGAAATTGA
15656452 AGAAAGAAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
45 32 0.91
46 3 0.09
ACGTcount: A:0.62, C:0.00, G:0.27, T:0.12
Consensus pattern (45 bp):
GAAAAAGAAAATGAAAAGGAGAAAAAGAAAAAAGAAATTGAGATT
Found at i:15658242 original size:20 final size:20
Alignment explanation
Indices: 15658219--15658266 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
15658209 TTAACTTAGT
15658219 TCAGCTCACTT-GAGCTCAAG
1 TCAGCTCA-TTCGAGCTCAAG
*
15658239 TCAGCTCATTCGAGCTCAAT
1 TCAGCTCATTCGAGCTCAAG
15658259 TCAGCTCA
1 TCAGCTCA
15658267 GTCTTAACCC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 2 0.08
20 24 0.92
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (20 bp):
TCAGCTCATTCGAGCTCAAG
Found at i:15658244 original size:10 final size:10
Alignment explanation
Indices: 15658218--15658266 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
15658208 TTTAACTTAG
*
15658218 TTCAGCTCAC
1 TTCAGCTCAA
*
15658228 TTGAGCTCAA
1 TTCAGCTCAA
*
15658238 GTCAGCTC-A
1 TTCAGCTCAA
15658247 TTCGAGCTCAA
1 TTC-AGCTCAA
15658258 TTCAGCTCA
1 TTCAGCTCA
15658267 GTCTTAACCC
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
9 3 0.09
10 25 0.78
11 4 0.12
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (10 bp):
TTCAGCTCAA
Found at i:15677173 original size:51 final size:51
Alignment explanation
Indices: 15677047--15677237 Score: 178
Period size: 51 Copynumber: 3.8 Consensus size: 51
15677037 GAAAGTGAAT
* * * * *
15677047 GTGATGGTCACGTGTGTAGTATTTTGTGCAGGCTACTA-CGTGTACCAGA-A
1 GTGATGATCACATGTGTAGTACTATGTGCAGGCTACTATC-AGTACCAGATA
* * *
15677097 -TGATAGCTCGCATGTGTAGTACTATGTGCAGGCTACTATGCA-TACCGGATA
1 GTGAT-GATCACATGTGTAGTACTATGTGCAGGCTACTAT-CAGTACCAGATA
* ** *
15677148 GCT-TTGATCATGTGTGTAGTACTATGTGCAGGCTACTA-CATGTATCAGATA
1 G-TGATGATCACATGTGTAGTACTATGTGCAGGCTACTATCA-GTACCAGATA
*
15677199 GTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTAT
1 GTGATGATCACATGTGTAGTACTATGTGCAGGCTACTAT
15677238 ATGAACCGGT
Statistics
Matches: 113, Mismatches: 18, Indels: 18
0.76 0.12 0.12
Matches are distributed among these distances:
49 6 0.05
50 35 0.31
51 69 0.61
52 2 0.02
53 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (51 bp):
GTGATGATCACATGTGTAGTACTATGTGCAGGCTACTATCAGTACCAGATA
Found at i:15687035 original size:40 final size:40
Alignment explanation
Indices: 15686991--15687197 Score: 260
Period size: 40 Copynumber: 5.2 Consensus size: 40
15686981 CAGGATTTTG
* *
15686991 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGC
*
15687031 CCGGATATAGTC-ACTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGC
* * * *
15687071 CCGGATATAGAAACTTGCCCAAACGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGC
*
15687111 CCGGATATAGTCAA-TAGCACAACTGCCTTCGGGACTTAGC
1 CCGGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGC
* *
15687151 CCGGATATAATC-ACTAGCAC-CATGCCTTCGGGACTTAGC
1 CCGGATAT-AGCAACTAGCACAAATGCCTTCGGGACTTAGC
*
15687190 TCGGATAT
1 CCGGATAT
15687198 CATCCGAATA
Statistics
Matches: 146, Mismatches: 16, Indels: 11
0.84 0.09 0.06
Matches are distributed among these distances:
39 25 0.17
40 117 0.80
41 4 0.03
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGC
Found at i:15690283 original size:27 final size:27
Alignment explanation
Indices: 15690245--15690308 Score: 119
Period size: 27 Copynumber: 2.4 Consensus size: 27
15690235 GATTAGCTTC
*
15690245 TATTTGTCCTGTTACATCCAAAAACCT
1 TATTTCTCCTGTTACATCCAAAAACCT
15690272 TATTTCTCCTGTTACATCCAAAAACCT
1 TATTTCTCCTGTTACATCCAAAAACCT
15690299 TATTTCTCCT
1 TATTTCTCCT
15690309 AATTCTAACA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.27, C:0.28, G:0.05, T:0.41
Consensus pattern (27 bp):
TATTTCTCCTGTTACATCCAAAAACCT
Found at i:15690879 original size:14 final size:14
Alignment explanation
Indices: 15690846--15690872 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15690836 TCAATAAGGT
15690846 AAATAAAAATATTA
1 AAATAAAAATATTA
15690860 AAATAAAAATATT
1 AAATAAAAATATT
15690873 TACATAACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
AAATAAAAATATTA
Found at i:15690921 original size:5 final size:5
Alignment explanation
Indices: 15690911--15690940 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
15690901 TTTTTAATGC
15690911 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
15690941 GTTAGAACAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:15691186 original size:15 final size:15
Alignment explanation
Indices: 15691166--15691196 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
15691156 CCAAATATCG
15691166 ACTGTTACAAAACTT
1 ACTGTTACAAAACTT
15691181 ACTGTTACAAAACTT
1 ACTGTTACAAAACTT
15691196 A
1 A
15691197 AACATTTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.19, G:0.06, T:0.32
Consensus pattern (15 bp):
ACTGTTACAAAACTT
Found at i:15703106 original size:26 final size:26
Alignment explanation
Indices: 15703045--15703109 Score: 112
Period size: 26 Copynumber: 2.5 Consensus size: 26
15703035 TACATTCTGC
* *
15703045 CCACAGCTCGTATGAGTAGGCCCATT
1 CCACAGCTCTTATGAGTAGACCCATT
15703071 CCACAGCTCTTATGAGTAGACCCATT
1 CCACAGCTCTTATGAGTAGACCCATT
15703097 CCACAGCTCTTAT
1 CCACAGCTCTTAT
15703110 AAGCATTGAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.26
Consensus pattern (26 bp):
CCACAGCTCTTATGAGTAGACCCATT
Found at i:15706337 original size:30 final size:29
Alignment explanation
Indices: 15706301--15706393 Score: 89
Period size: 30 Copynumber: 3.1 Consensus size: 29
15706291 TATTCAACCA
15706301 TATAATCATTCATATTTACATATCATACCC
1 TATAATCATTCA-ATTTACATATCATACCC
* *
15706331 TGTAATCATTTTCAA-ATACATATCATACCC
1 TATAATCA--TTCAATTTACATATCATACCC
* * * *
15706361 TATAACCATTTACATTTACCTTTCATACCC
1 TATAATCATTCA-ATTTACATATCATACCC
15706391 TAT
1 TAT
15706394 GTTGGGTCAC
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
28 3 0.06
29 1 0.02
30 42 0.82
31 1 0.02
32 4 0.08
ACGTcount: A:0.34, C:0.25, G:0.01, T:0.40
Consensus pattern (29 bp):
TATAATCATTCAATTTACATATCATACCC
Found at i:15710702 original size:46 final size:46
Alignment explanation
Indices: 15710625--15710842 Score: 239
Period size: 46 Copynumber: 4.7 Consensus size: 46
15710615 GCATATCTGT
* * *
15710625 GCCGATGCCATATCCCAAATATGATCTTACACTGGCTTACGTCTCGAG
1 GCCGATG-CATGTCCCAGACATG-TCTTACACTGGCTTACGTCTCGAG
15710673 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAG
* * * *
15710719 GCAGATGCATGTCCCAGACAT-TCTTACACTAG--TACTTGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTAC--GTCTCGAG
* * *
15710764 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACGT-CTCGAG
15710812 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
15710843 AGCTCAGACA
Statistics
Matches: 147, Mismatches: 14, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
43 3 0.02
45 22 0.15
46 68 0.46
47 26 0.18
48 25 0.17
49 1 0.01
50 1 0.01
51 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAG
Found at i:15710819 original size:93 final size:92
Alignment explanation
Indices: 15710673--15710844 Score: 251
Period size: 93 Copynumber: 1.9 Consensus size: 92
15710663 ACGTCTCGAG
* *
15710673 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCAGATGCATGTCCCAGAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCAGATGCATGTCCCAGAC
15710738 AT-TCTTACACTAGTACTTGTCTCAAT
66 ATGTCTTACACTAGTACTTGTCTCAAT
* *
15710764 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCATGTCCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-ATCGAGGCAGATGCATGTCCC
15710827 AGACATGTCTTACACTAG
62 AGACATGTCTTACACTAG
15710845 CTCAGACAAG
Statistics
Matches: 72, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
91 7 0.10
92 14 0.19
93 38 0.53
94 13 0.18
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCAGATGCATGTCCCAGAC
ATGTCTTACACTAGTACTTGTCTCAAT
Found at i:15712395 original size:42 final size:43
Alignment explanation
Indices: 15712302--15712396 Score: 106
Period size: 42 Copynumber: 2.2 Consensus size: 43
15712292 TCGTTGAACA
* *
15712302 GTCCGAGTTCGTGATATATGTAAGAATCTGAACTTGTTGAGTG
1 GTCCAAGTTCGTGATATATGTAAGAATCTCAACTTGTTGAGTG
* * *
15712345 GTCTAAGTTCGTGATATATGT-GGCATC-CAAGCTTGTTGAGAT-
1 GTCCAAGTTCGTGATATATGTAAGAATCTCAA-CTTGTTGAG-TG
15712387 GTCCAAGTTC
1 GTCCAAGTTC
15712397 ATTATGGATG
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
41 2 0.05
42 22 0.50
43 20 0.45
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (43 bp):
GTCCAAGTTCGTGATATATGTAAGAATCTCAACTTGTTGAGTG
Found at i:15712426 original size:43 final size:43
Alignment explanation
Indices: 15712367--15712452 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
15712357 GATATATGTG
* * * *
15712367 GCATCCAAGCTTGTTGAGATGTCCAAGTTCATTATGGATGCGA
1 GCATCCAAGCTCGTTGAAAGGTCCAAGTTCATAATGGATGCGA
* * *
15712410 GCATCCGAGCTCGTTGAAAGGTTCGAGTTCATAATGGATGCGA
1 GCATCCAAGCTCGTTGAAAGGTCCAAGTTCATAATGGATGCGA
15712453 TTCATGTAAC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (43 bp):
GCATCCAAGCTCGTTGAAAGGTCCAAGTTCATAATGGATGCGA
Found at i:15716415 original size:15 final size:15
Alignment explanation
Indices: 15716395--15716439 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
15716385 TATGATATTG
15716395 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
*
15716410 TATCTTGGATTTCTC
1 TATCTTGGATTTCTT
*
15716425 TATCTTGGACTTCTT
1 TATCTTGGATTTCTT
15716440 AATCCTAGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.13, C:0.18, G:0.13, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:15716453 original size:30 final size:30
Alignment explanation
Indices: 15716395--15716453 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
15716385 TATGATATTG
* * * *
15716395 TATCTTGGATTTCTTTATCTTGGATTTCTC
1 TATCTTGGACTTCTTAATCCTAGATTTCTC
*
15716425 TATCTTGGACTTCTTAATCCTAGTTTTCT
1 TATCTTGGACTTCTTAATCCTAGATTTCT
15716454 TGTTATCTAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.15, C:0.19, G:0.12, T:0.54
Consensus pattern (30 bp):
TATCTTGGACTTCTTAATCCTAGATTTCTC
Found at i:15718369 original size:138 final size:138
Alignment explanation
Indices: 15718120--15719027 Score: 1732
Period size: 138 Copynumber: 6.6 Consensus size: 138
15718110 CACTTGTGTG
* **
15718120 AGCTAGTGTAAGACATGTCCGGGACATGCATGACCACATTATGAGA---GCCAGTGTAAGACCAT
1 AGCTAGTGTAAGACATGTCTGGGACATGCAT--CGGC--TATGAGATGTGCCAGTGTAAGACCAT
15718182 GTCTGGGACATGGCATCAGCATTGAGACGAGTGCTAGTGTAAGACATTTCCGCAACATGTATCGG
62 GTCTGGGACATGGCATCAGCATTGAGACGAGTGCTAGTGTAAGACATTTCCGCAACATGTATCGG
15718247 CCTCGGGACGTA
127 CCTCGGGACGTA
15718259 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTGCCAGTGTAAGACCATGTCT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTGCCAGTGTAAGACCATGTCT
15718324 GGGACATGGCATCAGCATTGAGACGAGTGCTAGTGTAAGACATTTCCGCAACATGTATCGGCCTC
66 GGGACATGGCATCAGCATTGAGACGAGTGCTAGTGTAAGACATTTCCGCAACATGTATCGGCCTC
15718389 GGGACGTA
131 GGGACGTA
15718397 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTGCCAGTGTAAGACCATGTCT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTGCCAGTGTAAGACCATGTCT
15718462 GGGACATGGCATCAGCATTGAGACGAGTGCTAGTGTAAGACATTTCCGCAACATGTATCGGCCTC
66 GGGACATGGCATCAGCATTGAGACGAGTGCTAGTGTAAGACATTTCCGCAACATGTATCGGCCTC
15718527 GGGACGTA
131 GGGACGTA
15718535 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTGCCAGTGTAAGACCATGTCT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTGCCAGTGTAAGACCATGTCT
15718600 GGGACATGGCATCAGCATTGAGACGAGTGCTAGTGTAAGACATTTCCGCAACATGTATCGGCCTC
66 GGGACATGGCATCAGCATTGAGACGAGTGCTAGTGTAAGACATTTCCGCAACATGTATCGGCCTC
15718665 GGGACGTA
131 GGGACGTA
15718673 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTGCCAGTGTAAGACCATGTCT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTGCCAGTGTAAGACCATGTCT
15718738 GGGACATGGCATCAGCATTGAGACGAGTGCTAGTGTAAGACATTTCCGCAACATGTATCGGCCTC
66 GGGACATGGCATCAGCATTGAGACGAGTGCTAGTGTAAGACATTTCCGCAACATGTATCGGCCTC
15718803 GGGACGTA
131 GGGACGTA
15718811 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTGCCAGTGTAAGACCATGTCT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTGCCAGTGTAAGACCATGTCT
15718876 GGGACATGGCATCAGCATTGAGACGAGTGCTAGTGTAAGACATTTCCGCAACATGTATCGGCCTC
66 GGGACATGGCATCAGCATTGAGACGAGTGCTAGTGTAAGACATTTCCGCAACATGTATCGGCCTC
15718941 GGGACGTA
131 GGGACGTA
15718949 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTGCCAGTGTAAGACCATGTCT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTGCCAGTGTAAGACCATGTCT
15719014 GGGACATGGCATCA
66 GGGACATGGCATCA
15719028 TTACAGATAT
Statistics
Matches: 763, Mismatches: 3, Indels: 7
0.99 0.00 0.01
Matches are distributed among these distances:
135 7 0.01
137 2 0.00
138 724 0.95
139 30 0.04
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (138 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTGCCAGTGTAAGACCATGTCT
GGGACATGGCATCAGCATTGAGACGAGTGCTAGTGTAAGACATTTCCGCAACATGTATCGGCCTC
GGGACGTA
Found at i:15722538 original size:43 final size:43
Alignment explanation
Indices: 15722490--15722573 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
15722480 TATATGTGGT
* * * *
15722490 ATCCGAGCTCGTTGAGAGGTTCGATTTTATTATGGATGCGAGC
1 ATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGCGAGC
15722533 ATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGCGA
1 ATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGCGA
15722574 TTCATGTAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.29
Consensus pattern (43 bp):
ATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGCGAGC
Found at i:15725833 original size:40 final size:39
Alignment explanation
Indices: 15725778--15725953 Score: 221
Period size: 40 Copynumber: 4.4 Consensus size: 39
15725768 GATGATAACG
*
15725778 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ACTATA-TCC
*
15725818 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTATATCC
*
15725858 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-AAGTACTATATCC
* * *
15725898 GGGCTAAGTCTCGAAGGCATTTGAGCGAGTAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTA-CTATATCC
* *
15725938 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
15725954 TACTTGGTTT
Statistics
Matches: 122, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
39 16 0.13
40 103 0.84
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCAAGTACTATATCC
Found at i:15729344 original size:25 final size:25
Alignment explanation
Indices: 15729316--15729372 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
15729306 GTTACTAATT
* *
15729316 TCAGCTTGTATGAGCTTACCAATAC
1 TCAGCTCGTATGAGCCTACCAATAC
* *
15729341 TCAGCTCGTATGAGCCTACCATTAT
1 TCAGCTCGTATGAGCCTACCAATAC
15729366 TCAGCTC
1 TCAGCTC
15729373 AGAGGAGCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.32
Consensus pattern (25 bp):
TCAGCTCGTATGAGCCTACCAATAC
Found at i:15732541 original size:21 final size:20
Alignment explanation
Indices: 15732500--15732537 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
15732490 AAATTTTTGT
15732500 ATTTTGATGTTTAATGGTAG
1 ATTTTGATGTTTAATGGTAG
15732520 ATTTTGCATGTTT-ATGGT
1 ATTTTG-ATGTTTAATGGT
15732538 TAGAGAAACG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.21, C:0.03, G:0.24, T:0.53
Consensus pattern (20 bp):
ATTTTGATGTTTAATGGTAG
Found at i:15734982 original size:51 final size:52
Alignment explanation
Indices: 15734904--15735006 Score: 181
Period size: 51 Copynumber: 2.0 Consensus size: 52
15734894 GGGCCTCGTG
15734904 GGCCCATATAAGGGACGATATGCATGTGAATAAATGG-TTTGAATTGAATGA
1 GGCCCATATAAGGGACGATATGCATGTGAATAAATGGTTTTGAATTGAATGA
* *
15734955 GGCCCATATAAGGGATGATATGTATGTGAATAAATGGTTTTGAATTGAATGA
1 GGCCCATATAAGGGACGATATGCATGTGAATAAATGGTTTTGAATTGAATGA
15735007 ACTTTTATGG
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
51 35 0.71
52 14 0.29
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (52 bp):
GGCCCATATAAGGGACGATATGCATGTGAATAAATGGTTTTGAATTGAATGA
Found at i:15750377 original size:19 final size:18
Alignment explanation
Indices: 15750353--15750388 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
15750343 GCAAATGGAT
*
15750353 CATTTCACATTTTCATTTC
1 CATTTCA-ATTTCCATTTC
15750372 CATTTCAATTTCCATTT
1 CATTTCAATTTCCATTT
15750389 TTTAGAAACC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.22, C:0.25, G:0.00, T:0.53
Consensus pattern (18 bp):
CATTTCAATTTCCATTTC
Found at i:15759728 original size:50 final size:50
Alignment explanation
Indices: 15759664--15759761 Score: 187
Period size: 50 Copynumber: 2.0 Consensus size: 50
15759654 CCCCTAGTGT
*
15759664 TGCATTAACTCGATTTATGGATTCCTTTATTAGGTTTCACCCTAATCCAG
1 TGCATTAACTCGATTTATGGATTCCCTTATTAGGTTTCACCCTAATCCAG
15759714 TGCATTAACTCGATTTATGGATTCCCTTATTAGGTTTCACCCTAATCC
1 TGCATTAACTCGATTTATGGATTCCCTTATTAGGTTTCACCCTAATCC
15759762 GGCAAAATTA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.40
Consensus pattern (50 bp):
TGCATTAACTCGATTTATGGATTCCCTTATTAGGTTTCACCCTAATCCAG
Found at i:15772408 original size:19 final size:20
Alignment explanation
Indices: 15772384--15772421 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
15772374 GGTACCACCA
15772384 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
15772403 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
15772422 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:15772814 original size:46 final size:46
Alignment explanation
Indices: 15772646--15772818 Score: 156
Period size: 46 Copynumber: 3.7 Consensus size: 46
15772636 AACCCGCCCC
* * * * * *
15772646 TAAGTGAACTCGGACTCATCTCAACGAGATCGGGCGTTCGCATCAA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
15772692 TAAATGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCGC-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATC-CA
* *
15772742 --A-CGAACTCGGACTCAAGTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
*
15772785 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
15772819 TGCTCAACCA
Statistics
Matches: 100, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 1 0.01
43 7 0.07
44 1 0.01
45 1 0.01
46 56 0.56
47 27 0.27
48 1 0.01
49 1 0.01
50 5 0.05
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:15772814 original size:93 final size:93
Alignment explanation
Indices: 15772651--15772821 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
15772641 GCCCCTAAGT
* * *
15772651 GAACTCGGACTCATCTCAACGAGATCGGGCGTTCGCATCAATAAATGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGATCGGACATTCGCATCAATAAATGAACTCAGACTCAACTCAA
15772716 CGAGTTCGGATGCCTAGTTACATCGCAC
66 CGAGTTCGGATGCCTAGTTACATCGCAC
* * * * * *
15772744 GAACTCGGACTCAAGTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGATCGGACATTCGCATCAATAAATGAACTCAGACTCAACTCAA
*
15772809 TGAGTTCGGATGC
66 CGAGTTCGGATGC
15772822 TCAACCATCC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGATCGGACATTCGCATCAATAAATGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCGCAC
Found at i:15773496 original size:76 final size:76
Alignment explanation
Indices: 15773370--15773521 Score: 277
Period size: 76 Copynumber: 2.0 Consensus size: 76
15773360 TAACACATAC
*
15773370 TTGTGACTATTAGGTATTTTTGCCAATTAAGCCCTTTTACTCATTTTCACTCAAAACCGAGTAGC
1 TTGTGACTATTAGGTATTTTTGCCAATTAAGCCCTTTTACTCATTTTCACTAAAAACCGAGTAGC
15773435 ACAAGTTGTCT
66 ACAAGTTGTCT
* *
15773446 TTGTGACTATTAGGTATTTTTGCCGATTAAGCCCTTTTACTCGTTTTCACTAAAAACCGAGTAGC
1 TTGTGACTATTAGGTATTTTTGCCAATTAAGCCCTTTTACTCATTTTCACTAAAAACCGAGTAGC
15773511 ACAAGTTGTCT
66 ACAAGTTGTCT
15773522 AACATAATTT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 73 1.00
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (76 bp):
TTGTGACTATTAGGTATTTTTGCCAATTAAGCCCTTTTACTCATTTTCACTAAAAACCGAGTAGC
ACAAGTTGTCT
Found at i:15773891 original size:47 final size:49
Alignment explanation
Indices: 15773837--15773931 Score: 149
Period size: 49 Copynumber: 2.0 Consensus size: 49
15773827 TGCCCCTCCT
* * *
15773837 TACTAAACTTT-C-AAAATTCCTTCCATGTCCTAATTTTGTCTATGAAG
1 TACTAAACTTTCCAAAAATTCATTCCATGTCCTAATTTCGTCCATGAAG
15773884 TACTAAACTTTCCAAAAATTCATTCCATGTCCTAATTTCGTCCATGAA
1 TACTAAACTTTCCAAAAATTCATTCCATGTCCTAATTTCGTCCATGAA
15773932 CTTAAAATTG
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
47 11 0.26
48 1 0.02
49 31 0.72
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (49 bp):
TACTAAACTTTCCAAAAATTCATTCCATGTCCTAATTTCGTCCATGAAG
Found at i:15778615 original size:44 final size:44
Alignment explanation
Indices: 15778552--15778639 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
15778542 TTAGGGCTTA
15778552 ATCGGAATAGTGGTTTCGTGACCACAAATCTGAGATAGAAATAT
1 ATCGGAATAGTGGTTTCGTGACCACAAATCTGAGATAGAAATAT
15778596 ATCGGAATAGTGGTTTCGTGACCACAAATCTGAGATAGAAATAT
1 ATCGGAATAGTGGTTTCGTGACCACAAATCTGAGATAGAAATAT
15778640 TTATTTTACA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (44 bp):
ATCGGAATAGTGGTTTCGTGACCACAAATCTGAGATAGAAATAT
Found at i:15779989 original size:19 final size:20
Alignment explanation
Indices: 15779952--15779989 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
15779942 ATAAGGTGGT
15779952 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
15779972 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
15779990 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:15780370 original size:79 final size:80
Alignment explanation
Indices: 15780255--15780413 Score: 284
Period size: 79 Copynumber: 2.0 Consensus size: 80
15780245 TGATATGGCC
* *
15780255 ATGTTTGGTTGAGAAAATGTTTGATATTGATAAGTCATGGTGATGGCT-AATTTAGATCATGTTT
1 ATGTTTGGTTGAGAAAACGTTTGATATTGATAAGTCATGGAGATGGCTAAATTTAGATCATGTTT
15780319 GATATCATGGAAGTT
66 GATATCATGGAAGTT
*
15780334 ATGTTTGGTTGAGAAAACGTTTGATATTGATAAGTCATGGAGATGGTTAAATTTAGATCATGTTT
1 ATGTTTGGTTGAGAAAACGTTTGATATTGATAAGTCATGGAGATGGCTAAATTTAGATCATGTTT
15780399 GATATCATGGAAGTT
66 GATATCATGGAAGTT
15780414 TAATAGGTTA
Statistics
Matches: 76, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
79 45 0.59
80 31 0.41
ACGTcount: A:0.30, C:0.05, G:0.25, T:0.40
Consensus pattern (80 bp):
ATGTTTGGTTGAGAAAACGTTTGATATTGATAAGTCATGGAGATGGCTAAATTTAGATCATGTTT
GATATCATGGAAGTT
Found at i:15782596 original size:25 final size:25
Alignment explanation
Indices: 15782554--15782601 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
15782544 GAGAAAAATT
* * * *
15782554 AAAATGTAAAAGTTAAATTAAAACA
1 AAAATATAAAAATAAAATAAAAACA
15782579 AAAATATAAAAATAAAATAAAAA
1 AAAATATAAAAATAAAATAAAAA
15782602 TGGCTAAATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.21
Consensus pattern (25 bp):
AAAATATAAAAATAAAATAAAAACA
Found at i:15788247 original size:50 final size:49
Alignment explanation
Indices: 15788131--15788314 Score: 192
Period size: 50 Copynumber: 3.7 Consensus size: 49
15788121 GGTCGCATGG
* * * *
15788131 GTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT-GATCACGTGT
1 GTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTGTAGGTCACGTGT
* **
15788182 GTAGTACTAAATGCAGGCTACTACGTGTATTAGA-TGGTGAGGTCACGTGT
1 GTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-AGGTCACGTGT
* * * *
15788232 GTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCATAT
1 GTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACGTGT
* *
15788281 GTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
15788315 TAGCTTCGGC
Statistics
Matches: 113, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
47 1 0.01
48 4 0.04
49 39 0.35
50 42 0.37
51 27 0.24
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (49 bp):
GTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACGTGT
Found at i:15791334 original size:15 final size:15
Alignment explanation
Indices: 15791314--15791371 Score: 75
Period size: 15 Copynumber: 3.9 Consensus size: 15
15791304 GTATCTTGGG
15791314 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
15791329 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
15791344 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
15791359 TTTCTTTATTCTG
1 TTTCTTTATTCTG
15791372 TTTTCTTGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 4 0.11
15 29 0.78
16 4 0.11
ACGTcount: A:0.10, C:0.14, G:0.14, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:15793224 original size:100 final size:100
Alignment explanation
Indices: 15793040--15793884 Score: 1663
Period size: 100 Copynumber: 8.4 Consensus size: 100
15793030 ATGATCTATT
*
15793040 GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCATGTGT
1 GTGAGGTCAC-TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCATGTGT
15793105 GTAGCACTAAGTGCAGGCTACTATGTGTATTAGATG
65 GTAGCACTAAGTGCAGGCTACTATGTGTATTAGATG
15793141 GTGAGGTCACTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCATGTGTG
1 GTGAGGTCACTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCATGTGTG
15793206 TAGCACTAAGTGCAGGCTACTATGTGTATTAGATG
66 TAGCACTAAGTGCAGGCTACTATGTGTATTAGATG
15793241 GTGAGGTCACTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCATGTGTG
1 GTGAGGTCACTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCATGTGTG
15793306 TAGCACTAAGTGCAGGCTACTATGTGTATTAGATG
66 TAGCACTAAGTGCAGGCTACTATGTGTATTAGATG
15793341 GTGAGGTCACTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCATGTGTG
1 GTGAGGTCACTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCATGTGTG
15793406 TAGCACTAAGTGCAGGCTACTATGTGTATTAGATG
66 TAGCACTAAGTGCAGGCTACTATGTGTATTAGATG
15793441 GTGAGGTCACTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCATGTGTG
1 GTGAGGTCACTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCATGTGTG
15793506 TAGCACTAAGTGCAGGCTACTATGTGTATTAGATG
66 TAGCACTAAGTGCAGGCTACTATGTGTATTAGATG
15793541 GTGAGGTCACTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCATGTGTG
1 GTGAGGTCACTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCATGTGTG
15793606 TAGCACTAAGTGCAGGCTACTATGTGTATTAGATG
66 TAGCACTAAGTGCAGGCTACTATGTGTATTAGATG
15793641 GTGAGGTCACTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCATGTGTG
1 GTGAGGTCACTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCATGTGTG
15793706 TAGCACTAAGTGCAGGCTACTATGTGTATTAGATG
66 TAGCACTAAGTGCAGGCTACTATGTGTATTAGATG
15793741 GTGAGGTCACTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCATGTGTG
1 GTGAGGTCACTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCATGTGTG
15793806 TAGCACTAAGTGCAGGCTACTATGTGTATTAGATG
66 TAGCACTAAGTGCAGGCTACTATGTGTATTAGATG
*
15793841 GTGAGGTCACTGTGTAGTACTAAGTGCAGGCTACTACGCGTACC
1 GTGAGGTCACTGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
15793885 AGACTGTTGG
Statistics
Matches: 742, Mismatches: 2, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
100 733 0.99
101 9 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (100 bp):
GTGAGGTCACTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCATGTGTG
TAGCACTAAGTGCAGGCTACTATGTGTATTAGATG
Found at i:15806978 original size:15 final size:15
Alignment explanation
Indices: 15806958--15806988 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
15806948 GTTACAGAGT
15806958 ATTACCGGACTTATA
1 ATTACCGGACTTATA
15806973 ATTACCGGACTTATA
1 ATTACCGGACTTATA
15806988 A
1 A
15806989 AATAATTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.32
Consensus pattern (15 bp):
ATTACCGGACTTATA
Found at i:15810032 original size:79 final size:80
Alignment explanation
Indices: 15809888--15810145 Score: 294
Period size: 79 Copynumber: 3.2 Consensus size: 80
15809878 TTGAATGATG
* * * *
15809888 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCAAATCCGGGTTAAGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAATCCGGGCTAAGTCCCGAAGGCAT
*
15809951 TTGTGCGAGTTACTAAA
64 TTGTACGAGTTACTAAA
* * *
15809968 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTTCGGGCTAAG-CCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTT
15810032 GTACGAGTTACTAAA
66 GTACGAGTTACTAAA
* * * *
15810047 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAAGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA-AATCCGGGCTAAGTCCCGAAGGCATT
* *
15810111 TGAACGAG-TAGCTATA
65 TGTACGAGTTA-CTAAA
* *
15810127 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
15810146 TACGTGATTT
Statistics
Matches: 154, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
79 86 0.56
80 58 0.38
81 9 0.06
82 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GTACGAGTTACTAAA
Found at i:15810111 original size:119 final size:120
Alignment explanation
Indices: 15809890--15810112 Score: 326
Period size: 119 Copynumber: 1.9 Consensus size: 120
15809880 GAATGATGTC
* *
15809890 CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCTTTGTACTAAGTGACCAAATCCGGGTTAAGTCCCGAAGGCAATTGT
* * *
15809955 GCGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTT
66 GCGAGTTACTAAATCCGGGCTAAGTCCCGAAAGCATTTGTGCGAGATACTAATTT
* * *
15810010 CGGGCTAAG-CCCGAAGGCATTTGTAC-GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTG
1 CGGGCTAAGTCCCGAAGGC-TTTGTACTAAGTGACCAAATCCGGGTTAAGTCCCGAAGGCAATTG
*
15810073 TGCGAGTTACTATAA-CCGGGCTATGTCCCGAAAGCATTTG
65 TGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAAGCATTTG
15810113 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
119 75 0.82
120 17 0.18
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
CGGGCTAAGTCCCGAAGGCTTTGTACTAAGTGACCAAATCCGGGTTAAGTCCCGAAGGCAATTGT
GCGAGTTACTAAATCCGGGCTAAGTCCCGAAAGCATTTGTGCGAGATACTAATTT
Found at i:15810119 original size:40 final size:40
Alignment explanation
Indices: 15809888--15810112 Score: 285
Period size: 40 Copynumber: 5.7 Consensus size: 40
15809878 TTGAATGATG
* * * *
15809888 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
15809928 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
15809968 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
15810008 TTCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
15810047 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
15810088 -CCGGGCTATGTCCCGAAAGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
15810113 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
39 34 0.21
40 118 0.73
41 9 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:15820414 original size:20 final size:21
Alignment explanation
Indices: 15820389--15820432 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
15820379 ATAGCTTTGG
* *
15820389 TTATTTTATTATTTTACT-TA
1 TTATTTCATTAATTTACTATA
15820409 TTATTTCATTAATTTACTATA
1 TTATTTCATTAATTTACTATA
15820430 TTA
1 TTA
15820433 ACCTTTTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.64
Consensus pattern (21 bp):
TTATTTCATTAATTTACTATA
Found at i:15827496 original size:25 final size:24
Alignment explanation
Indices: 15827457--15827508 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 24
15827447 GTAAGGAGGG
15827457 GATAAGGGAGAAGATTTAGGAGCT
1 GATAAGGGAGAAGATTTAGGAGCT
15827481 GATAAGGGGAGAAGATTTAGGAGCT
1 GATAA-GGGAGAAGATTTAGGAGCT
15827506 GAT
1 GAT
15827509 CAAAGAGCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 5 0.19
25 22 0.81
ACGTcount: A:0.37, C:0.04, G:0.38, T:0.21
Consensus pattern (24 bp):
GATAAGGGAGAAGATTTAGGAGCT
Found at i:15828958 original size:27 final size:27
Alignment explanation
Indices: 15828909--15829019 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
15828899 AGGAAGCATC
* * *
15828909 CTGGTGGCTATGCGACA-ACTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGTT
*
15828936 CTGGTGGTTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
*
15828963 CTGGTGGCTCTGCAACA-ATTATCTGTT
1 CTGGTGGCTCTGCCACATA-TATCTGTT
* *
15828990 CTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
15829016 CTGG
1 CTGG
15829020 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 13 0.18
27 58 0.81
28 1 0.01
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGTT
Found at i:15828993 original size:54 final size:53
Alignment explanation
Indices: 15828909--15829019 Score: 150
Period size: 54 Copynumber: 2.1 Consensus size: 53
15828899 AGGAAGCATC
* **
15828909 CTGGTGGCTATGCGACAACTATCTGATCTGGTGGTTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCAACAACTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * * *
15828963 CTGGTGGCTCTGCAACAATTATCTGTTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCAACAACTATCTGATCTGGTGACTCTGCCACATTATCTGTT
15829016 CTGG
1 CTGG
15829020 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 12 0.24
54 38 0.76
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (53 bp):
CTGGTGGCTATGCAACAACTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:15834832 original size:181 final size:179
Alignment explanation
Indices: 15834524--15835063 Score: 778
Period size: 181 Copynumber: 3.0 Consensus size: 179
15834514 GTAAGAAGTT
* * * *
15834524 AGTTAAACACTTGGCCGTGCCACTCCCTCAGAAAATATGGCACAACGGGGGCCGTGGTGGTGCGG
1 AGTTAAACACTTGGCCGTGCCGC-CCCCCAGGAAACATGGCACAACGGGGGCCGTGGTGGTGCGG
* * * *
15834589 GTGCGAGCTCCCAACTGTTGGTGGTCCCGGCACTTGTTTAATTTTCTGCTGTGCCGTGCCATGCC
65 GTGCGAGCTCCCAACTGTTGGTGGT-CCGGCACTTGTTCAATTTTCTACCGTGCCATGCCATGCC
15834654 ATACTTCATTCGGCTTCTTTTATTTGTTTTGGGCCAATAGAAAAAATTTCTA
129 ATACTTCATTCGGCTTCTTTTATTT-TTTTGGGCCAATAGAAAAAATTTCTA
* * * *
15834706 AGTTAAACACTTGGCCGTGCTGCCCCCCAGGAAACATGGTACAACGGGGGCCATGGTGGTGCTGG
1 AGTTAAACACTTGGCCGTGCCGCCCCCCAGGAAACATGGCACAACGGGGGCCGTGGTGGTGCGGG
* *
15834771 TGCGAGCTCCTAACTGTTGGCGGTCCGAGCACTTGTTCAATTTTCTACCGTGCCATGCCATGCCA
66 TGCGAGCTCCCAACTGTTGGTGGTCCG-GCACTTGTTCAATTTTCTACCGTGCCATGCCATGCCA
* *
15834836 TACTTCATTCGGATTCTTTTATTTTTTTGGGGCCAACAGAAAAAATTTCTA
130 TACTTCATTCGGCTTCTTTTATTTTTTT-GGGCCAATAGAAAAAATTTCTA
* *
15834887 AGTTAAACACTTGGCCGTGCCGCCCCCTCAGGAAACATGGCACAATGGGGGCCGTGGTGGTGGGG
1 AGTTAAACACTTGGCCGTGCCGCCCCC-CAGGAAACATGGCACAACGGGGGCCGTGGTGGTGCGG
* * *
15834952 GTGCAAGCTCCCAACTGTTGGTGGTTCGGGCACTTGTTCAATTTTCTTCCGTGCCAT--CATGCC
65 GTGCGAGCTCCCAACTGTTGGTGG-TCCGGCACTTGTTCAATTTTCTACCGTGCCATGCCATGCC
* * *
15835015 ATATTTCATTCGGCTTATTGTATTTCTTTTGGGCCAATAGAAAAAATTT
129 ATACTTCATTCGGCTTCTTTTATTT-TTTTGGGCCAATAGAAAAAATTT
15835064 TCAGCTAAAA
Statistics
Matches: 321, Mismatches: 32, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
180 52 0.16
181 165 0.51
182 101 0.31
183 3 0.01
ACGTcount: A:0.21, C:0.24, G:0.25, T:0.30
Consensus pattern (179 bp):
AGTTAAACACTTGGCCGTGCCGCCCCCCAGGAAACATGGCACAACGGGGGCCGTGGTGGTGCGGG
TGCGAGCTCCCAACTGTTGGTGGTCCGGCACTTGTTCAATTTTCTACCGTGCCATGCCATGCCAT
ACTTCATTCGGCTTCTTTTATTTTTTTGGGCCAATAGAAAAAATTTCTA
Found at i:15835583 original size:58 final size:58
Alignment explanation
Indices: 15835510--15835625 Score: 178
Period size: 58 Copynumber: 2.0 Consensus size: 58
15835500 TCTAATCCAA
* * *
15835510 AAAGGTAGAGTTCGGATACCGTTACATGTTCGGTGCCCAATAATGAATGAAGCGTCCC
1 AAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAACAATGAATGAAGCGTCCC
* * *
15835568 AAAGGTAGAATTCGGATTCCGTTGCATGTTCGGTACCCAACAATGAATGAATCGTCCC
1 AAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAACAATGAATGAAGCGTCCC
15835626 TGTCCTCCCC
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
58 52 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (58 bp):
AAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAACAATGAATGAAGCGTCCC
Found at i:15838010 original size:20 final size:20
Alignment explanation
Indices: 15837985--15838026 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
15837975 TGGGAACCCT
15837985 GCGACAGTTCGTGATTTGAA
1 GCGACAGTTCGTGATTTGAA
15838005 GCGACAGTTCGTGATTTGAA
1 GCGACAGTTCGTGATTTGAA
15838025 GC
1 GC
15838027 AACTTCTCGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.29
Consensus pattern (20 bp):
GCGACAGTTCGTGATTTGAA
Found at i:15842598 original size:42 final size:43
Alignment explanation
Indices: 15842547--15842698 Score: 182
Period size: 43 Copynumber: 3.6 Consensus size: 43
15842537 GTCGGTGGTC
*
15842547 CGAGAGCCTCGAGCAGCATCGACACCTTAGTG-CTCGGATGTG
1 CGAGAGCCTCGAGCAGCATCGGCACCTTAGTGCCTCGGATGTG
* * *
15842589 CGAGAGCCTCGAGCAGCATCGGTACCTTGGTGCCTCAGATGTG
1 CGAGAGCCTCGAGCAGCATCGGCACCTTAGTGCCTCGGATGTG
* * * * *
15842632 TGAGAGCCTCGAGCAGCATTGGCACCTTAGGGCCTTGCATGTG
1 CGAGAGCCTCGAGCAGCATCGGCACCTTAGTGCCTCGGATGTG
* *
15842675 CGGGAGCCTCG-GACACCATCGGCA
1 CGAGAGCCTCGAG-CAGCATCGGCA
15842699 AACTAGGCCC
Statistics
Matches: 92, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
42 30 0.33
43 62 0.67
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.19
Consensus pattern (43 bp):
CGAGAGCCTCGAGCAGCATCGGCACCTTAGTGCCTCGGATGTG
Found at i:15842725 original size:43 final size:43
Alignment explanation
Indices: 15842672--15844524 Score: 1625
Period size: 43 Copynumber: 43.5 Consensus size: 43
15842662 GGCCTTGCAT
* * * *
15842672 GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTAGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * **
15842715 GTCCGAGAGCCTGGGGCACCATCAGCACCCT-GGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * ***
15842757 ATGTGGGAGCCTTGGGCACCATCGGC-ACCTTGATGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
15842799 GTGCGAGATCCTC-GGCACCATCGGCAACCTAGGCTCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
15842841 GTACAGGAGCCTCGGGCACCATCGGTAACCCAGGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
15842884 GTACGGGAGCCTCGGGTACCATTGGCAACCTAGGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
15842927 GTGCGGGAGCCTCGGGCACAATCAGG-AACCTAGACACTTGGTC
1 GTGCGGGAGCCTCGGGCACCATC-GGCAACCTAGGCCCTTGGTC
* * * **
15842970 GTGCGAGAGCCTC-GACACCATCGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * ***
15843011 GTGCGGGAGCCTCAGACACCATCGGC-ACTTCGTTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
15843053 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCTTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
15843096 GTACGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** *
15843139 ATGCGGGAACCTCGGGCACCATCGAAAACCTAGGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
15843182 ATGCGGGAGCCTCGGGCGCCATCTGCAGCCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** * *
15843225 GTAG-GAGAGCCTC-GGCACCGCCGGC-ACCTTGG-ACTTGGAT-
1 GT-GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * ** *
15843265 GTGCGGGAGCCTCAGACACCATCGGC-ACCTTGGTGCTTAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTC
* * * * *
15843307 GTGCGTGAGCCTCGGACACCATCGGCAACCTAGACCCTTGTTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ** * ** *
15843350 GTGTGAGAGCCAC-GGCACCATCAAC-ACCTTGGTGCTTAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTC
* * ** * * * **
15843391 GTACGAGTTCCTCAGACACCATCGG-AACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
15843433 ATGCGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
15843476 GTGCGGGAGCCTCAGGCACCATCGGCAACTTAGGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
15843519 GTGCGGGAGCCTCGGGTACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * *
15843562 GTGTGGGAGCCTTGAGCACCATTGGCAACCTAGGCCATTGCTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * * * * * * *
15843605 CTGTGGGAACCTCGAGCACCATTGGTAATCTAGGTCGTTGATT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
15843648 GTGTGGGGGCCTCGGGCACCATCGGCAACC-AGGGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTA-GGCCCTTGGTC
* * * * **
15843691 GTGCGAGAGCCT-AGGCACCATCGG-TACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
15843732 GTGCGGAAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
15843775 GTGCGGGAGCCTTGGGCACCATCGACAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
15843818 GTGTGGAAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** * *
15843861 GTGCGGGATCCTCTAGCACCATCAGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
15843904 GTGCGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** * *
15843947 GTGCGGGATCCTCTAGCACCATCAGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** * *
15843990 ATGCGGGAGCCTTAGGCACCATCGGTAACCTAGGCCCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
15844033 GTGCGGGAGCCTCGAGCACCATCGGTAGCCTAGGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
15844076 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** * *
15844119 ATGCGGGAGCCTTAGGCACCATCGGTAACCTAGGCCCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
15844162 GTGCGGGAGCCTCGAGCACCATCGGTAGCCTAGGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
15844205 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * **
15844248 GTGCGAGAGCCTC-GGCACCATCGGC-ACATTGGTACTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * ** *
15844289 GTGCGGGAGCCTCGGGCACCATCGGC-CCCTTGGTGCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
15844331 GTGCGGGAGCCTCGGGTACTATCGGCAACCTAGGCCCTTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
15844374 GTGTGGGAGCCTCGGGCATCATCGGCAACCTAGGCCATTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
15844417 GTGCGGGAGCCTCGGGCACCTTTGGC-ACCTTAGTG-CC-TGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TC
* * *
15844459 GTGCGGGAGCCTCGGTCACCATCAGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
**
15844502 GTGCTAGAGCCTCGGGCACCATC
1 GTGCGGGAGCCTCGGGCACCATC
15844525 AACACCTTGG
Statistics
Matches: 1473, Mismatches: 295, Indels: 84
0.80 0.16 0.05
Matches are distributed among these distances:
39 1 0.00
40 15 0.01
41 122 0.08
42 326 0.22
43 1005 0.68
44 4 0.00
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.21
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:15844638 original size:24 final size:22
Alignment explanation
Indices: 15844606--15844653 Score: 78
Period size: 24 Copynumber: 2.1 Consensus size: 22
15844596 TAGCCTGTTA
15844606 GTCGCCTGGTAGCCTGGTAGCAGC
1 GTCGCCTGGTAG-C-GGTAGCAGC
15844630 GTCGCCTGGTAGCGGTAGCAGC
1 GTCGCCTGGTAGCGGTAGCAGC
15844652 GT
1 GT
15844654 TTTGGTTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 11 0.46
23 1 0.04
24 12 0.50
ACGTcount: A:0.12, C:0.27, G:0.40, T:0.21
Consensus pattern (22 bp):
GTCGCCTGGTAGCGGTAGCAGC
Found at i:15867215 original size:58 final size:59
Alignment explanation
Indices: 15867139--15867253 Score: 153
Period size: 58 Copynumber: 2.0 Consensus size: 59
15867129 TCTTTCCCCA
* * *
15867139 ATCCCAAAAGGTAGAATTCAGATA-TCGTTACATGTTCGGTACCCAATAATGAGTGAACC
1 ATCCCAAAAGGTAGAATTCAGATACT-ATTACATGTTCGGTACCCAACAATGAATGAACC
* * *
15867198 ATCCC-AAAGGTAGAATTCGGATACTATTGCATGTTCGGTGCCCAACAATGAATGAA
1 ATCCCAAAAGGTAGAATTCAGATACTATTACATGTTCGGTACCCAACAATGAATGAA
15867254 TCGTCCCTGT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
58 43 0.88
59 6 0.12
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (59 bp):
ATCCCAAAAGGTAGAATTCAGATACTATTACATGTTCGGTACCCAACAATGAATGAACC
Found at i:15871291 original size:35 final size:35
Alignment explanation
Indices: 15871252--15871323 Score: 99
Period size: 35 Copynumber: 2.1 Consensus size: 35
15871242 CATCTCCGAA
* *
15871252 GCTTGGTAAATATGGAAAGTAATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
* * *
15871287 GCTTGGCAAATATGGAAGGGGATCTTTAAAGATAT
1 GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
15871322 GC
1 GC
15871324 GATCCTAGAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.29
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:15871840 original size:43 final size:43
Alignment explanation
Indices: 15871793--15872656 Score: 742
Period size: 43 Copynumber: 20.3 Consensus size: 43
15871783 CAGAGATGTT
* * * * * *
15871793 CGGGAGCCTCAGACACTATCGGCAAACTAGGCCCTTAGTTGTA
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * ** * *
15871836 CGGGAGCCTCGGGCACCATCAGC-ACCTTGGTGCTAGGAT-ATG
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTG
* * * * ** *
15871878 CGGGAGCCTCGGGCACCATTGG-AAACTTGGTACTTGG-CTGTA
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC-GTG
* *
15871920 CGAGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTAGTCGTG
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTG
** * * *
15871962 CATGAGCCTC-GAGCACCATCGGTAACCTAGACCCTTGGTTGTG
1 CGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * **
15872005 CTGGAGCCCCGGGCACCATCGGCAACCTAGGCCCTTAATCGTG
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * * * *
15872048 TGGGAGTCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCCTA
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTG
*
15872091 CGGGAGCCTCGG-CACCATCGGCAACTTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTG
* * *
15872133 CGAGAGCCTCAG-CACCATCGGTAACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTG
* *
15872175 CGGGAGCCTCGGCCACCATCGGTAACCTAGGCCCTTGGAT-GTG
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTG
* * * *
15872218 CGGGAGCCTCAGACTCCACCAGCAACCTAGGCCCTTGGAT-GTG
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTG
* * * *
15872261 CAGAAGCCTCAGACACCATCGGCAACCTAGGTCCTTGGTCGTG
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * ** *
15872304 CGGGAGCCTC-GAGCACCATCGG-TACTTTGGTGCTTAGAT-GTG
1 CGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTT-GGTCGTG
* * **
15872346 CGGGAGCCTCGGACACTATCGGC-ACCTTGGTGCTTGGAT-GTG
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTG
* * * *
15872388 CGGAAGCCTCGGACAACATCGACAACCTAGGCCCTTGGTCATG
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTG
** * **
15872431 TAGGAGCCTC-GAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTG
1 CGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTG
*
15872473 CGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTG
** *
15872516 CGGGAGTTTC-GAGCACCATCGGCAACCTAGGCCCTTGGTCATG
1 CGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGGTCGTG
*
15872559 CGGGAGCCTCAGG-CACAATCGGCAACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * * *
15872602 CGAGAGGCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTA
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTG
*
15872645 CGAGAGCCTCGG
1 CGGGAGCCTCGG
15872657 TACTATCGAC
Statistics
Matches: 671, Mismatches: 122, Indels: 56
0.79 0.14 0.07
Matches are distributed among these distances:
41 10 0.01
42 251 0.37
43 407 0.61
44 2 0.00
45 1 0.00
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (43 bp):
CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTG
Found at i:15872030 original size:86 final size:86
Alignment explanation
Indices: 15871793--15872655 Score: 774
Period size: 85 Copynumber: 10.1 Consensus size: 86
15871783 CAGAGATGTT
* * * * * *
15871793 CGGGAGCCTC-AGACACTATCGGCAAACTAGGCCCTTAGTTGTACGGGAGCCTCGGGCACCATCA
1 CGGGAGCCTCGAG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
* ** * *
15871857 GC-ACCTTGGTGCTAGGAT-ATG
65 GCAACCTAGGCCCTTGG-TCGTG
* * * * ** * *
15871878 CGGGAGCCTCGGGCACCATTGG-AAACTTGGTACTTGG-CTGTACGAGAGCCTC-GGCACCATCG
1 CGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTC-GTGCGGGAGCCTCGGGCACCATCG
*
15871940 GCAACCTAGGCCCTTAGTCGTG
65 GCAACCTAGGCCCTTGGTCGTG
** * * * * *
15871962 CATGAGCCTCGAGCACCATCGGTAACCTAGACCCTTGGTTGTGCTGGAGCCCCGGGCACCATCGG
1 CGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
**
15872027 CAACCTAGGCCCTTAATCGTG
66 CAACCTAGGCCCTTGGTCGTG
* * * * * *
15872048 TGGGAGTCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCCTACGGGAGCCTC-GGCACCATCGG
1 CGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
*
15872112 CAACTTAGGCCCTTGGTCGTG
66 CAACCTAGGCCCTTGGTCGTG
* * *
15872133 CGAGAGCCTC-AGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGG
1 CGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
*
15872197 TAACCTAGGCCCTTGGAT-GTG
66 CAACCTAGGCCCTTGG-TCGTG
* * * * * * *
15872218 CGGGAGCCTC-AGACTCCACCAGCAACCTAGGCCCTTGGAT-GTGCAGAAGCCTCAGACACCATC
1 CGGGAGCCTCGAG-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATC
*
15872281 GGCAACCTAGGTCCTTGGTCGTG
64 GGCAACCTAGGCCCTTGGTCGTG
* * * ** * * *
15872304 CGGGAGCCTCGAGCACCATCGG-TACTTTGGTGCTTAGAT-GTGCGGGAGCCTCGGACACTATCG
1 CGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCG
* **
15872367 GC-ACCTTGGTGCTTGGAT-GTG
65 GCAACCTAGGCCCTTGG-TCGTG
* * * * ** *
15872388 CGGAAGCCTCG-GACAACATCGACAACCTAGGCCCTTGGTCATGTAGGAGCCTCGAGCACCATCG
1 CGGGAGCCTCGAG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
* **
15872452 GC-ACCTTGGTGCTTGGAT-GTG
65 GCAACCTAGGCCCTTGG-TCGTG
* ** *
15872473 CGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGTTTCGAGCACCATCGG
1 CGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
*
15872538 CAACCTAGGCCCTTGGTCATG
66 CAACCTAGGCCCTTGGTCGTG
* * *
15872559 CGGGAGCCTC-AGGCACAATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCG
1 CGGGAGCCTCGA-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
* *
15872623 GTAACCTAGGCCCTTGGTCGTA
65 GCAACCTAGGCCCTTGGTCGTG
*
15872645 CGAGAGCCTCG
1 CGGGAGCCTCG
15872656 GTACTATCGA
Statistics
Matches: 637, Mismatches: 118, Indels: 44
0.80 0.15 0.06
Matches are distributed among these distances:
83 13 0.02
84 125 0.20
85 248 0.39
86 248 0.39
87 3 0.00
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (86 bp):
CGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
CAACCTAGGCCCTTGGTCGTG
Found at i:15872175 original size:213 final size:214
Alignment explanation
Indices: 15871795--15872640 Score: 813
Period size: 213 Copynumber: 4.0 Consensus size: 214
15871785 GAGATGTTCG
* * * * * * * * *
15871795 GGAGCCTCAGACACTATCGGCAAACTAGGCCCTTAGTTGTACGGGAGCCTCGGGCACCATCAGC-
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATGTGCGGGAGCCTCGGACACCATCGGCA
* ** * * * * * ** *
15871859 ACCTTGGTGCTAGGAT-ATGCGGGAGCCTCGGGCACCATTGGAAACTT-GGTACTTGG-CTGTAC
66 ACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGAGCACCATCGGCAACTTAGGCCCTTGGTC-GTGC
* * *
15871921 GAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTAGTCGTGCATGAGCCTC-GAGCACCATCGGT
129 GAGAGCCTCAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGA-CACCATCGGT
*
15871985 AACCTAGACCCTTGGTTGTGCT
193 AACCTAGGCCCTTGGTTGTGCT
* * * * * *
15872007 GGAGCCCCGGGCACCATCGGCAACCTAGGCCCTT-AATCGTGTGGGAGTCTCGGGCACCATCGGT
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGC
* *
15872071 AACCTAGGCCCTTGGTCCTACGGGAGCCTCG-GCACCATCGGCAACTTAGGCCCTTGGTCGTGCG
65 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCAACTTAGGCCCTTGGTCGTGCG
* * *
15872135 AGAGCCTCAGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGTAA
130 AGAGCCTCAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGACACCATCGGTAA
* *
15872200 CCTAGGCCCTTGGATGTGCG
195 CCTAGGCCCTTGGTTGTGCT
* * * * * * * *
15872220 GGAGCCTCAGACTCCACCAGCAACCTAGGCCCTTGGATGTGCAGAAGCCTCAGACACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATGTGCGGGAGCCTCGGACACCATCGGCA
* * * ** *
15872285 ACCTAGGTCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGG-TACTTTGGTGCTTAGAT-GTGCG
66 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCAACTTAGGCCCTT-GGTCGTGCG
* * * * ** * *
15872348 GGAGCCTCGGACACTATCGGC-ACCTTGGTGCTTGGAT-GTGC-GGAAGCCTCGGACAACATCGA
130 AGAGCCTCAG-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCAGG-AGCCTCGGACACCATCGG
* **
15872410 CAACCTAGGCCCTTGGTCATG-T
192 TAACCTAGGCCCTTGGTTGTGCT
* * ** *
15872432 AGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGC
1 -GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATGTGCGGGAGCCTCGGACACCATCGGC
** * *
15872496 AACCTAGGCCCTTGGTCGTGCGGGAGTTTCGAGCACCATCGGCAACCTAGGCCCTTGGTCATGCG
65 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCAACTTAGGCCCTTGGTCGTGCG
* * * *
15872561 GGAGCCTCAGGCACAATCGGCAACCTAGGCCCTTGGTCGTGC-GAGAGGCTCGGGCACCATCGGT
130 AGAGCCTCA-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCAG-GAGCCTCGGACACCATCGGT
15872625 AACCTAGGCCCTTGGT
193 AACCTAGGCCCTTGGT
15872641 CGTACGAGAG
Statistics
Matches: 513, Mismatches: 102, Indels: 36
0.79 0.16 0.06
Matches are distributed among these distances:
211 1 0.00
212 143 0.28
213 296 0.58
214 72 0.14
215 1 0.00
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (214 bp):
GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATGTGCGGGAGCCTCGGACACCATCGGCA
ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCAACTTAGGCCCTTGGTCGTGCGA
GAGCCTCAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGACACCATCGGTAAC
CTAGGCCCTTGGTTGTGCT
Found at i:15878190 original size:182 final size:183
Alignment explanation
Indices: 15877761--15878315 Score: 827
Period size: 182 Copynumber: 3.0 Consensus size: 183
15877751 GTAAGGAGTT
* * *
15877761 AGTTAAACACTTGGCCTTGCCGCCCCCTCGGGAAATATGGCACAATGGGGGCCGTGGTGGTGCGG
1 AGTTAAACACTTGGCCGTGCCGCCCCCTCAGGAAATATGGCACAACGGGGGCCGTGGTGGTGCGG
*
15877826 GTGCGAGCTCCCAACTT-TTGGTGGTCTGGGCACTTGTTCAATTTTCTGCCGTGCCGTGCCATGC
66 GTGCGAGCTCCCAA-TTGTTGGTGGTCCGGGCACTTGTTCAATTTTCTGCCGTGCCGT----T-C
*
15877890 CATGCCATACTTCATTCGGCTTCTTGTATTTTTTTTGGGCCAACAGAAAAAA-TTTCTA
125 CATGCCATACTTCATTCGGCTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTTCTA
* * *
15877948 AGTTAAACACTTGGCCGTGCCGCCCCCTCTGGAAATATGGCACAACGGGGGCCATGGTGGTGTGG
1 AGTTAAACACTTGGCCGTGCCGCCCCCTCAGGAAATATGGCACAACGGGGGCCGTGGTGGTGCGG
15878013 GTGCGAGCTCCCAATTGTTGGTGGTCCGGGCACTTGTTCAATTTTCTGCCGTGCCGTTCCATG-C
66 GTGCGAGCTCCCAATTGTTGGTGGTCCGGGCACTTGTTCAATTTTCTGCCGTGCCGTTCCATGCC
* *
15878077 ATACTTCATTCGGCTTCTTGTATTTGTTTTGGGCCAACAAAAAAAATTTTCTA
131 ATACTTCATTCGGCTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTTCTA
* * *
15878130 AGTTAAACACTTGGCCGTCCCGCCCCCTCAGGAAACATGGCACAACGGGGGCCGTGGTGGTGCGA
1 AGTTAAACACTTGGCCGTGCCGCCCCCTCAGGAAATATGGCACAACGGGGGCCGTGGTGGTGCGG
* * * *
15878195 GTGCGAGCTCCCAACTGTTGGTGGTCCGGGTACTTGTTCAATTTTCTGTCGTGCC-AT-CATGCC
66 GTGCGAGCTCCCAATTGTTGGTGGTCCGGGCACTTGTTCAATTTTCTGCCGTGCCGTTCCATGCC
* * *
15878258 ATATTTTATTCGACTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTTC-A
131 ATACTTCATTCGGCTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTTCTA
15878310 A-TTAAA
1 AGTTAAA
15878316 AATACTAAGT
Statistics
Matches: 342, Mismatches: 23, Indels: 14
0.90 0.06 0.04
Matches are distributed among these distances:
179 5 0.01
180 6 0.02
181 93 0.27
182 122 0.36
183 1 0.00
186 2 0.01
187 113 0.33
ACGTcount: A:0.20, C:0.25, G:0.25, T:0.30
Consensus pattern (183 bp):
AGTTAAACACTTGGCCGTGCCGCCCCCTCAGGAAATATGGCACAACGGGGGCCGTGGTGGTGCGG
GTGCGAGCTCCCAATTGTTGGTGGTCCGGGCACTTGTTCAATTTTCTGCCGTGCCGTTCCATGCC
ATACTTCATTCGGCTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTTCTA
Found at i:15885345 original size:15 final size:15
Alignment explanation
Indices: 15885325--15885354 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
15885315 TGTATCGTTC
15885325 TTCGGTGGAAATGCG
1 TTCGGTGGAAATGCG
15885340 TTCGGTGGAAATGCG
1 TTCGGTGGAAATGCG
15885355 GTGCCGGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.13, G:0.40, T:0.27
Consensus pattern (15 bp):
TTCGGTGGAAATGCG
Found at i:15885364 original size:17 final size:15
Alignment explanation
Indices: 15885327--15885365 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
15885317 TATCGTTCTT
*
15885327 CGGTGGAAATGCGTT
1 CGGTGGAAATGCGTC
15885342 CGGTGGAAATGCGGTGC
1 CGGTGGAAATGC-GT-C
15885359 CGGTGGA
1 CGGTGGA
15885366 CCTATGTGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 12 0.57
16 2 0.10
17 7 0.33
ACGTcount: A:0.18, C:0.15, G:0.46, T:0.21
Consensus pattern (15 bp):
CGGTGGAAATGCGTC
Found at i:15890859 original size:86 final size:86
Alignment explanation
Indices: 15890748--15891905 Score: 633
Period size: 85 Copynumber: 13.3 Consensus size: 86
15890738 GTGCTCTGAT
* * *
15890748 GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCT-GATGTGCGAGAGCCTCGAACACTA
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCT-TGGATGTGCGAGAGCCTCGAACACCA
* * *
15890812 TCGGTAAACTAGGCCCTTGGTT
65 TCGGCAACCTAGGCCCTTGGTC
*
15890834 GTGCAGGAGCCTCGGGCACCATCGGCACCTTGGTG-CTTGGATGTGCGAGAGCCTC--ACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGATGTGCGAGAGCCTCGAACACCAT
* *
15890896 TGGCAACCTAGTCCCTTGGTC
66 CGGCAACCTAGGCCCTTGGTC
* * *
15890917 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTAG-TCGTGCGAGAGCCTC-AAGCAC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTTGGAT-GTGCGAGAGCCTCGAA-CAC
*
15890979 CATCGGCAACCTAGGCCCTTGATC
63 CATCGGCAACCTAGGCCCTTGGTC
* * * * * *
15891003 GTGCGGGAGCCTCGGGTACCATCGGCAACCTAGG-CCCTTGGTTGTGCAAGAGCCTCG-GCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTTGGATGTGCGAGAGCCTCGAACACCA
* * *
15891066 TCGGCAACCTAAGACCTCGGTC
65 TCGGCAACCTAGGCCCTTGGTC
*
15891088 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG-CTTGGATGTGTTG-GAGCCTCGAACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGATGTG-CGAGAGCCTCGAACACCA
* **
15891151 TCGGC-ACCTTGGTGCTTGGAT-
65 TCGGCAACCTAGGCCCTTGG-TC
** ** * ** * * * * * **
15891172 GTGCTAGAGCCTCGGATACCATCGGTAACCAAGGAGTCTCGGACACTAT-CG-GCA-CCTTAGTG
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTTGGTGCCTTGG--A-TGTGCGAG-AGCC-TCGAA
*** * * *
15891234 CTTGGATGTGCGGGAGCCTCGGACACCATTGGTAAC
60 C-ACCA--T-CGGCAACCTAGG-C-CC-TTGGT--C
* * * * * * *
15891270 CTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGATG-CTTGGATGTGCGGG
1 GT--G--C-GGGAGCCT-C-GG-G-CAC------CATCGGCACCTTGGTGCCTTGGATGTGCGAG
* * * * * *
15891333 AGCCTCGGACACCATCGG-TACCTTGGTGCTTTGAT-
51 AGCCTCGAACACCATCGGCAACCTAGG-CCCTTGGTC
* * * * * * * * **
15891368 GTGCGGAAACTTTGGGCACCATCGGTAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACC
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTTGGTGCCTTGGAT-GTGCGAGAGCCTCGAACACC
15891431 ATCGGCAACCTAGGCCCTTGGTC
64 ATCGGCAACCTAGGCCCTTGGTC
* * * * **
15891454 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTTGGGCACC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTTGGAT-GTGCGAGAGCCTCGAACACC
* *
15891517 ATCGGCAACCTAAGCCCTTGATC
64 ATCGGCAACCTAGGCCCTTGGTC
* * * ** * **
15891540 GTGCGAGAGCCCCAGGCACCATCGGCAACCTACG-CCCTTGG-TCGTGCGAGAGCCTCG-GTACC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTTGGAT-GTGCGAGAGCCTCGAACACC
*
15891602 ATCGGCAACCTAGGCCCTTGGTT
64 ATCGGCAACCTAGGCCCTTGGTC
* * *
15891625 GTGCGGGAACCTCGGGCACCATCGGCACCTTAGTG-CTTGGATGTGCGAGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGATGTGCGAGAGCCTCGAACACCAT
* * **
15891689 TGGC-ACCTTGGTACTTGGAT-
66 CGGCAACCTAGGCCCTTGG-TC
* * * * * * **
15891709 GTGTGGGAGCCTCGGGCACCATCAGCAACCTAGG-CCCTCGG-TCGTGCGGGAGCCTCGGGCACC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTTGGAT-GTGCGAGAGCCTCGAACACC
* **
15891772 ATCGGC-ACCTTGGTGCTTGGAT-
64 ATCGGCAACCTAGGCCCTTGG-TC
* **
15891794 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG-CTTGGATGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGATGTGCGAGAGCCTCGAACACCAT
* *
15891858 CGGCAACCAAGGTCCTTGGTC
66 CGGCAACCTAGGCCCTTGGTC
*
15891879 GTGCGGGTA-CCTCGGGCACTATCGGCA
1 GTGCGGG-AGCCTCGGGCACCATCGGCA
15891906 ACCTAGGCCC
Statistics
Matches: 852, Mismatches: 153, Indels: 135
0.75 0.13 0.12
Matches are distributed among these distances:
83 48 0.06
84 180 0.21
85 286 0.34
86 246 0.29
87 5 0.01
88 5 0.01
89 3 0.00
90 2 0.00
91 2 0.00
92 5 0.01
93 6 0.01
94 3 0.00
95 2 0.00
96 5 0.01
98 2 0.00
100 1 0.00
101 4 0.00
102 4 0.00
103 8 0.01
104 5 0.01
105 1 0.00
106 1 0.00
107 3 0.00
108 7 0.01
109 3 0.00
110 4 0.00
111 5 0.01
112 6 0.01
ACGTcount: A:0.17, C:0.31, G:0.32, T:0.20
Consensus pattern (86 bp):
GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGATGTGCGAGAGCCTCGAACACCAT
CGGCAACCTAGGCCCTTGGTC
Found at i:15891193 original size:42 final size:42
Alignment explanation
Indices: 15890725--15892032 Score: 444
Period size: 43 Copynumber: 30.2 Consensus size: 42
15890715 CCTCGAGTAG
* * *
15890725 CATCGGCACCTTGGTGCTCT-GATGTGCGGGAGCCTC-GAGCAG
1 CATCGGCACCTTGGTCCT-TGGATGTGCGAGAGCCTCGGA-CAC
*
15890767 CATCGGCACCTTGGTGCCTCT-GATGTGCGAGAGCCTCGAACAC
1 CATCGGCACCTTGGT-CCT-TGGATGTGCGAGAGCCTCGGACAC
* * * * * * *
15890810 TATCGGTAAACTAGGCCCTTGGTTGTGC-AGGAGCCTCGGGCAC
1 CATCGG-CACCTTGGTCCTTGGATGTGCGA-GAGCCTCGGACAC
*
15890853 CATCGGCACCTTGGTGCTTGGATGTGCGAGAGCCTC--ACAC
1 CATCGGCACCTTGGTCCTTGGATGTGCGAGAGCCTCGGACAC
* * * *
15890893 CATTGGCAACC-TAGTCCCTTGG-TCGTGCGGGAGCCTCGGGCAC
1 CATCGGC-ACCTTGGT-CCTTGGAT-GTGCGAGAGCCTCGGACAC
* * * *
15890936 CATCGGCAACCTAGGCCCTTAG-TCGTGCGAGAGCCTC-AAGCAC
1 CATCGGC-ACCTTGGTCCTTGGAT-GTGCGAGAGCCTCGGA-CAC
* * * **
15890979 CATCGGCAACCTAGGCCCTT-GATCGTGCGGGAGCCTCGGGTAC
1 CATCGGC-ACCTTGGTCCTTGGAT-GTGCGAGAGCCTCGGACAC
* * * *
15891022 CATCGGCAACCTAGGCCCTTGGTTGTGCAAGAGCCTCGG-CAC
1 CATCGGC-ACCTTGGTCCTTGGATGTGCGAGAGCCTCGGACAC
** * * * *
15891064 CATCGGCAACCTAAGACCTCGG-TCGTGCGGGAGCCTCGGGCAC
1 CATCGGC-ACCTTGGTCCTTGGAT-GTGCGAGAGCCTCGGACAC
* * *
15891107 CATCGGCACCTTGGTGCTTGGATGTGTTG-GAGCCTCGAACAC
1 CATCGGCACCTTGGTCCTTGGATGTG-CGAGAGCCTCGGACAC
* * *
15891149 CATCGGCACCTTGGTGCTTGGATGTGCTAGAGCCTCGGATAC
1 CATCGGCACCTTGGTCCTTGGATGTGCGAGAGCCTCGGACAC
* ** * * * **
15891191 CATCGGTAACCAAGGAGT-CTCGGACACTAT-CG-GCA-CCTTAGTG-CTTG
1 CATCGG-CACC-TTG-GTCCTTGG--A-TGTGCGAG-AGCC-TCG-GAC-AC
* * * * ** * *
15891238 GATGTGCGGGAGCCTCGGACACCATTGGTAACCTAG-GCCCTTG-GTCGTGCGGGA-GC
1 CA--T-CGGCA-CCTTGG--TCC-TTGG--A--T-GTG--CGAGAG-CCT-C-GGACAC
* * *
15891294 C-TCGGGCACCATCGGCACCTTGATGCTTGGATGTGCGGGAGCCTCGGACAC
1 CATC-GGCACC-TTGG-TCC-------TTGGATGTGCGAGAGCCTCGGACAC
* * * * * * *
15891345 CATCGGTACCTTGGTGCTTTGATGTGCG-GAAACTTTGGGCAC
1 CATCGGCACCTTGGTCCTTGGATGTGCGAG-AGCCTCGGACAC
* * * * *
15891387 CATCGGTAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCAC
1 CATCGG-CACCTTGGTCCTTGGAT-GTGCGAGAGCCTCGGACAC
* * * *
15891430 CATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCAC
1 CATCGGC-ACCTTGGTCCTTGGAT-GTGCGAGAGCCTCGGACAC
* * * * *
15891473 CATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTTGGGCAC
1 CATCGGC-ACCTTGGTCCTTGGAT-GTGCGAGAGCCTCGGACAC
** * *
15891516 CATCGGCAACCTAAGCCCTT-GATCGTGCGAGAGCCCCAGG-CAC
1 CATCGGC-ACCTTGGTCCTTGGAT-GTGCGAGAGCCTC-GGACAC
** * *
15891559 CATCGGCAACCTACGCCCTTGG-TCGTGCGAGAGCCTCGG-TAC
1 CATCGGC-ACCTTGGTCCTTGGAT-GTGCGAGAGCCTCGGACAC
* * * * * *
15891601 CATCGGCAACCTAGGCCCTTGGTTGTGCGGGAACCTCGGGCAC
1 CATCGGC-ACCTTGGTCCTTGGATGTGCGAGAGCCTCGGACAC
* *
15891644 CATCGGCACCTTAGTGCTTGGATGTGCGAGAGCCTCGGACAC
1 CATCGGCACCTTGGTCCTTGGATGTGCGAGAGCCTCGGACAC
* * * * *
15891686 CATTGGCACCTTGGTACTTGGATGTGTGGGAGCCTCGGGCAC
1 CATCGGCACCTTGGTCCTTGGATGTGCGAGAGCCTCGGACAC
* * * * * *
15891728 CATCAGCAACCTAGGCCCTCGG-TCGTGCGGGAGCCTCGGGCAC
1 CATCGGC-ACCTTGGTCCTTGGAT-GTGCGAGAGCCTCGGACAC
* * *
15891771 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCAC
1 CATCGGCACCTTGGTCCTTGGATGTGCGAGAGCCTCGGACAC
* * *
15891813 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCAC
1 CATCGGCACCTTGGTCCTTGGATGTGCGAGAGCCTCGGACAC
** * *
15891855 CATCGGCAACCAAGGTCCTTGG-TCGTGCGGGTA-CCTCGGGCAC
1 CATCGGC-ACCTTGGTCCTTGGAT-GTGCGAG-AGCCTCGGACAC
* * * * * * * *
15891898 TATCGGCAACCTAGGCCCTTGG-TCGTACGGGAGCTTTGGGCAC
1 CATCGGC-ACCTTGGTCCTTGGAT-GTGCGAGAGCCTCGGACAC
* *
15891941 CATCGGCACCTTGGTACC-TAGATGTGCGGGAGCCTCTGG-CAC
1 CATCGGCACCTTGGT-CCTTGGATGTGCGAGAGCCTC-GGACAC
* * *
15891983 CATCGGCAACCTAGGCCCTTGG-TCGTGCTG-GAGCCTCGGGCAC
1 CATCGGC-ACCTTGGTCCTTGGAT-GTGC-GAGAGCCTCGGACAC
15892026 CATCGGC
1 CATCGGC
15892033 CGATCAGTCT
Statistics
Matches: 1015, Mismatches: 164, Indels: 173
0.75 0.12 0.13
Matches are distributed among these distances:
40 13 0.01
41 22 0.02
42 386 0.38
43 493 0.49
44 20 0.02
45 5 0.00
46 5 0.00
47 4 0.00
48 1 0.00
49 4 0.00
50 11 0.01
51 9 0.01
52 17 0.02
53 12 0.01
54 2 0.00
56 3 0.00
57 3 0.00
58 5 0.00
ACGTcount: A:0.17, C:0.31, G:0.32, T:0.20
Consensus pattern (42 bp):
CATCGGCACCTTGGTCCTTGGATGTGCGAGAGCCTCGGACAC
Found at i:15891262 original size:69 final size:69
Alignment explanation
Indices: 15891135--15891270 Score: 200
Period size: 69 Copynumber: 2.0 Consensus size: 69
15891125 TGGATGTGTT
* * *
15891135 GGAGCCTCGAACACCATCGGCACCTTGGTGCTTGGATGTGCTAGAGCCTCGGATACCATCGGTAA
1 GGAGCCTCGAACACCATCGGCACCTTAGTGCTTGGATGTGCGAGAGCCTCGGACACCATCGGTAA
15891200 CCAA
66 CCAA
* * * * *
15891204 GGAGTCTCGGACACTATCGGCACCTTAGTGCTTGGATGTGCGGGAGCCTCGGACACCATTGGTAA
1 GGAGCCTCGAACACCATCGGCACCTTAGTGCTTGGATGTGCGAGAGCCTCGGACACCATCGGTAA
15891269 CC
66 CC
15891271 TAGGCCCTTG
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
69 59 1.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.21
Consensus pattern (69 bp):
GGAGCCTCGAACACCATCGGCACCTTAGTGCTTGGATGTGCGAGAGCCTCGGACACCATCGGTAA
CCAA
Found at i:15891288 original size:43 final size:43
Alignment explanation
Indices: 15891241--15892032 Score: 864
Period size: 43 Copynumber: 18.6 Consensus size: 43
15891231 GTGCTTGGAT
* * *
15891241 GTGCGGGAGCCTCGGACACCATTGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ***
15891284 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGATGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * * *
15891326 GTGCGGGAGCCTCGGACACCATCGG-TACCTTGGTGCTTTGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGTC
* * * * *
15891368 GTGCGGAAACTTTGGGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
15891411 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
15891454 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
15891497 GTGCGGGAGCCTTGGGCACCATCGGCAACCTAAGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
15891540 GTGCGAGAGCCCCAGGCACCATCGGCAACCTACGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
15891583 GTGCGAGAGCCTC-GGTACCATCGGCAACCTAGGCCCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
15891625 GTGCGGGAACCTCGGGCACCATCGGC-ACCTTAGTG--CTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TC
* * * * **
15891667 GTGCGAGAGCCTCGGACACCATTGGC-ACCTTGGTACTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
15891709 GTGTGGGAGCCTCGGGCACCATCAGCAACCTAGGCCCTCGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* **
15891752 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* **
15891794 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
15891836 GTGCGGGAGCCTCGGGCACCATCGGCAACCAAGGTCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
15891879 GTGCGGGTA-CCTCGGGCACTATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGG-AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * * *
15891922 GTACGGGAGCTTTGGGCACCATCGGC-ACCTTGGTACCTAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGTC
*
15891964 GTGCGGGAGCCTCTGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
15892007 GTGCTGGAGCCTCGGGCACCATCGGC
1 GTGCGGGAGCCTCGGGCACCATCGGC
15892033 CGATCAGTCT
Statistics
Matches: 640, Mismatches: 88, Indels: 42
0.83 0.11 0.05
Matches are distributed among these distances:
40 1 0.00
41 2 0.00
42 278 0.43
43 357 0.56
44 2 0.00
ACGTcount: A:0.16, C:0.31, G:0.33, T:0.20
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:15891435 original size:127 final size:128
Alignment explanation
Indices: 15891241--15892031 Score: 881
Period size: 127 Copynumber: 6.2 Consensus size: 128
15891231 GTGCTTGGAT
* * *
15891241 GTGCGGGAGCCTCGGACACCATTGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAACCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * * * * *
15891306 CGGCACCTTGATGCTTGGATGTGCGGGAGCCTCGGACACCATCGG-TACCTTGGTGCTTTGAT-
65 CGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTTGGTC
* * *
15891368 GTGCGGAAACTTTGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAACCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* **
15891433 CGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGT
65 CGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTTGGT
15891496 C
128 C
* * * * * * *
15891497 GTGCGGGAGCCTTGGGCACCATCGGCAACCTAAGCCCTTGATCGTGCGAGAGCCCCAGGCACCAT
1 GTGCGGGAACCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
** ** * *
15891562 CGGCAACCTACGCCCTTGG-TCGTGCGAGAGCCTC-GGTACCATCGGCAACCTAGG-CCCTTGGT
65 CGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTTGGT
*
15891624 T
128 C
* * *
15891625 GTGCGGGAACCTCGGGCACCATCGGCACCTTAGTG--CTTGGAT-GTGCGAGAGCCTCGGACACC
1 GTGCGGGAACCTCGGGCACCATCGGAACC-TAG-GCCCTTGG-TCGTGCGGGAGCCTCGGGCACC
* * * * *
15891687 ATTGGCACCTTGGTACTTGGATGTGTGGGAGCCTCGGGCACCATCAGCAACCTAGG-CCCTCGGT
63 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTTGGT
15891751 C
128 C
* * * **
15891752 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAACCTCGGGCACCATCGGAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCAT
*
15891816 CGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCAAGGT-CCTTGGTC
65 CGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTTGGTC
* * * * *
15891879 GTGCGGGTACCTCGGGCACTATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCTTTGGGCACCAT
1 GTGCGGGAACCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * *
15891944 CGGCACCTTGGTACCTAGATGTGCGGGAGCCTCTGGCACCATCGGCAACCTAGG-CCCTTGGTC
65 CGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTTGGTC
* *
15892007 GTGCTGGAGCCTCGGGCACCATCGG
1 GTGCGGGAACCTCGGGCACCATCGG
15892032 CCGATCAGTC
Statistics
Matches: 572, Mismatches: 77, Indels: 29
0.84 0.11 0.04
Matches are distributed among these distances:
125 1 0.00
126 23 0.04
127 253 0.44
128 200 0.35
129 95 0.17
ACGTcount: A:0.16, C:0.31, G:0.33, T:0.20
Consensus pattern (128 bp):
GTGCGGGAACCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
GGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTTGGTC
Found at i:15892032 original size:85 final size:86
Alignment explanation
Indices: 15891241--15892032 Score: 843
Period size: 85 Copynumber: 9.3 Consensus size: 86
15891231 GTGCTTGGAT
* * * *
15891241 GTGCGGGAGCCTCGGACACCATTGGTAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTTGAT-GTGCGGGAGCCTCGGGCACCA
* ***
15891305 TCGGC-ACCTTGATGCTTGGAT-
65 TCGGCAACCTAGGCCCTTGG-TC
* * * * * * * * *
15891326 GTGCGGGAGCCTCGGACACCATCGG-TACCTTGGTGCTTTGATGTGCGGAAACTTTGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTTGATGTGCGGGAGCCTCGGGCACCAT
*
15891390 CGGTAACCTAGGCCCTTGGTC
66 CGGCAACCTAGGCCCTTGGTC
*
15891411 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTTGAT-GTGCGGGAGCCTCGGGCACCA
15891475 TCGGCAACCTAGGCCCTTGGTC
65 TCGGCAACCTAGGCCCTTGGTC
* * * * *
15891497 GTGCGGGAGCCTTGGGCACCATCGGCAACCTAAG-CCCTTGATCGTGCGAGAGCCCCAGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTTGAT-GTGCGGGAGCCTCGGGCACCA
*
15891561 TCGGCAACCTACGCCCTTGGTC
65 TCGGCAACCTAGGCCCTTGGTC
* * * *
15891583 GTGCGAGAGCCTC-GGTACCATCGGCAACCTAGG-CCCTTGGTTGTGCGGGAACCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTT-GATGTGCGGGAGCCTCGGGCACCA
15891646 TCGGC-ACCTTAGTG--CTTGGAT-
65 TCGGCAACC-TAG-GCCCTTGG-TC
* * * * * *
15891667 GTGCGAGAGCCTCGGACACCATTGGC-ACCTTGGT-ACTTGGATGTGTGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTT-GATGTGCGGGAGCCTCGGGCACCA
* *
15891730 TCAGCAACCTAGGCCCTCGGTC
65 TCGGCAACCTAGGCCCTTGGTC
* *
15891752 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGT-GCTTGGATGTGCGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTT-GATGTGCGGGAGCCTCGGGCACCA
* **
15891815 TCGGC-ACCTTGGTGCTTGGAT-
65 TCGGCAACCTAGGCCCTTGG-TC
* * *
15891836 GTGCGGGAGCCTCGGGCACCATCGGCAACCAAGGT-CCTTGGTCGTGCGGGTA-CCTCGGGCACT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTTGAT-GTGCGGG-AGCCTCGGGCACC
15891899 ATCGGCAACCTAGGCCCTTGGTC
64 ATCGGCAACCTAGGCCCTTGGTC
* * * * * * *
15891922 GTACGGGAGCTTTGGGCACCATCGGC-ACCTTGGTACCTAGATGTGCGGGAGCCTCTGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTTGATGTGCGGGAGCCTCGGGCACCAT
15891986 CGGCAACCTAGGCCCTTGGTC
66 CGGCAACCTAGGCCCTTGGTC
*
15892007 GTGCTGGAGCCTCGGGCACCATCGGC
1 GTGCGGGAGCCTCGGGCACCATCGGC
15892033 CGATCAGTCT
Statistics
Matches: 600, Mismatches: 84, Indels: 46
0.82 0.12 0.06
Matches are distributed among these distances:
83 1 0.00
84 127 0.21
85 295 0.49
86 177 0.29
ACGTcount: A:0.16, C:0.31, G:0.33, T:0.20
Consensus pattern (86 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTTGATGTGCGGGAGCCTCGGGCACCAT
CGGCAACCTAGGCCCTTGGTC
Found at i:15895689 original size:43 final size:43
Alignment explanation
Indices: 15895620--15896244 Score: 671
Period size: 43 Copynumber: 14.7 Consensus size: 43
15895610 GTATTTAATA
* *
15895620 GAGCCTC-GGCACCATCTGCAACCTAGGCCCTTGGTCGTACGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* * *
15895662 GAGCCTCGGACACTATCGACAACCTAGGCCCTTGGAT-GTGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGG
* * *
15895705 GAGCCTCGGACACCATCGGCAATCTAGGCCCTTGGAT-ATGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGG
* * *
15895748 AAGCCTCGGACACCATTGGCAACCTAGGCCCTTGGTCGTGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* * * *
15895791 GAGCCTCAGACACCATCGGTAACCTAGGCCCCTGGTCGTGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* * * * *
15895834 GAGCCTTGGGCACCATCGGTAACCTAGGCCCCTGGTTGTGCGA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* * * *
15895877 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTTGTGTGA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
*
15895920 GAGCCTCGGGCACCATCGGC-ACCTAGGCCATTGGTCGTGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* * * * * *
15895962 GAGCCTTGGGCACCATCAGCAACATAGGCCCCTGATCGTACGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* ** ** *
15896005 GAGCCTCGGGCGCCATCGGC-ACCTTCGTGCTTGGAT-GTACGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGG
*
15896047 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* *
15896090 GAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCATGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
*
15896133 GAGCCTCGGGCACCATCGGC-ACCTA-GCTGCCTCGGAT-GTGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGC--CCTTGG-TCGTGCGG
* * * * *
15896176 GAGCCTCGAGCAGCATTGGC-ACCTTGG-TCTTGGAT-GTGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGG
* *
15896217 GAGCCTCGGACACCATAGGCAACCTAGG
1 GAGCCTCGGGCACCATCGGCAACCTAGG
15896245 ACGTTGGATA
Statistics
Matches: 499, Mismatches: 72, Indels: 24
0.84 0.12 0.04
Matches are distributed among these distances:
41 30 0.06
42 86 0.17
43 380 0.76
44 3 0.01
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.18
Consensus pattern (43 bp):
GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
Found at i:15910426 original size:42 final size:42
Alignment explanation
Indices: 15910380--15910604 Score: 185
Period size: 42 Copynumber: 5.3 Consensus size: 42
15910370 GACATCAGTG
15910380 GTGCGAGAGCCTCGCGAACATCGGCACCTTGGTGCCTTGGAT
1 GTGCGAGAGCCTCGCGAACATCGGCACCTTGGTGCCTTGGAT
* *
15910422 GTGCGGGAGCCTCGCGAGCATCGGCACCTTGGTGCCTTGGAT
1 GTGCGAGAGCCTCGCGAACATCGGCACCTTGGTGCCTTGGAT
* * * * *
15910464 GTGCGGGAGCCTTG-GACACCATCGGCAAAC-TAG-GCTCTTGGTT
1 GTGCGAGAGCCTCGCGA-A-CATCGGC-ACCTTGGTGC-CTTGGAT
* * * *
15910507 GTGC-AGGAGCCTCAGTGACCATCAGCACCTTGGTG-CTCGGAT
1 GTGCGA-GAGCCTC-GCGAACATCGGCACCTTGGTGCCTTGGAT
* * * **
15910549 GTGCTG-GAGCCTTGGGCACCATCGGCACCTTGGTG-CAAGGAT
1 GTGC-GAGAGCCTCGCG-AACATCGGCACCTTGGTGCCTTGGAT
15910591 GTGCGAGAGCCTCG
1 GTGCGAGAGCCTCG
15910605 GCACCATTGG
Statistics
Matches: 149, Mismatches: 21, Indels: 26
0.76 0.11 0.13
Matches are distributed among these distances:
41 5 0.03
42 105 0.70
43 33 0.22
44 4 0.03
45 2 0.01
ACGTcount: A:0.16, C:0.28, G:0.35, T:0.21
Consensus pattern (42 bp):
GTGCGAGAGCCTCGCGAACATCGGCACCTTGGTGCCTTGGAT
Found at i:15910504 original size:43 final size:43
Alignment explanation
Indices: 15910422--15911559 Score: 1239
Period size: 43 Copynumber: 26.8 Consensus size: 43
15910412 TGCCTTGGAT
* * * * *
15910422 GTGCGGGAGCCTCGCG-AGCATCGGC-ACCTTGGTGCCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCCTGG-TC
* * * * * *
15910464 GTGCGGGAGCCTTGGACACCATCGGCAAACTAGGCTCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * * * **
15910507 GTGCAGGAGCCTCAGTG-ACCATCAGC-ACCTTGG-TGCTCGGAT-
1 GTGCGGGAGCCTC-GGGCACCATCGGCAACCTAGGCCCCT-GG-TC
* * * ** **
15910549 GTGCTGGAGCCTTGGGCACCATCGGC-ACCTTGGTGCAAGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TC
* * * *
15910591 GTGCGAGAGCCTC-GGCACCATTGGCAACCTAGGACCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* *
15910633 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* *
15910676 GTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* ** *
15910719 GTGCGAGAGCCTC-GGCACCATCCTCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
*
15910761 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
*
15910804 GTGCGAGAGCCTC-GGCACCAT------CCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
*
15910840 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * *
15910883 GTCCGGGATCCTCGGGCACTATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
*
15910926 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * *
15910969 GTCCGGGATCCTCGGGCACTATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
*
15911012 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * *
15911055 GTCCGGGATCCTCGGGCACTATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
*
15911098 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * *
15911141 GTCCGGGATCCTCGGGCACCATCAGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
*
15911184 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * *
15911227 GTCCGGGATCCTCGGGCACTATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
15911270 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
15911313 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* ** ** *
15911356 GTGCGAGAGCCT-GAGGCACCATCGGC-ACCTTCGTGCTTGGAT-
1 GTGCGGGAGCCTCG-GGCACCATCGGCAACCTAGGCCCCTGG-TC
* * * * *
15911398 GTACGGGAGCCTCGGACACCATCGGTAACTTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * * *
15911441 ATGCGAGAGCCTCGGGCACCATCGGC-ACCT-TGCTGCCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC-CCCT-GG-TC
* * * * * ** *
15911484 GTGCGGGAGCCTCGAGCAGCATTGGC-ATCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TC
* *
15911526 GTGCGGGAGCCTCGGACACCATAGGCAACCTAGG
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG
15911560 ACATTGGATG
Statistics
Matches: 939, Mismatches: 128, Indels: 57
0.84 0.11 0.05
Matches are distributed among these distances:
36 26 0.03
37 8 0.01
41 18 0.02
42 191 0.20
43 688 0.73
44 8 0.01
ACGTcount: A:0.15, C:0.33, G:0.33, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
Found at i:15911612 original size:43 final size:43
Alignment explanation
Indices: 15911270--15911618 Score: 157
Period size: 43 Copynumber: 8.2 Consensus size: 43
15911260 GCCCCTGGTC
* * * * *
15911270 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCCTGG-T
1 GTGCGGGAGCCTCGAGCACCATAGGCACCCTGGTGCCTC-GGAT
* * * * *
15911312 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCCTGG-T
1 -GTGCGGGAGCCTCGAGCACCATAGGCACCCTGGTGCCTC-GGAT
* * * * *
15911355 CGTGCGAGAGCCT-GAGGCACCATCGGCACCTTCGTG-CTTGGAT
1 -GTGCGGGAGCCTCGA-GCACCATAGGCACCCTGGTGCCTCGGAT
* * * * * * *
15911398 GTACGGGAGCCTCG-GACACCATCGGTAACTTAGG-CCCTTGG-T
1 GTGCGGGAGCCTCGAG-CACCATAGGCACCCT-GGTGCCTCGGAT
* * * * * *
15911440 CATGCGAGAGCCTCGGGCACCATCGGCACCTTGCTGCCTCGGAT
1 -GTGCGGGAGCCTCGAGCACCATAGGCACCCTGGTGCCTCGGAT
* * * * *
15911484 GTGCGGGAGCCTCGAGCAGCATTGGCATCTTGGTG-CTTGGAT
1 GTGCGGGAGCCTCGAGCACCATAGGCACCCTGGTGCCTCGGAT
* * * *
15911526 GTGCGGGAGCCTCG-GACACCATAGGCAACCTAGG-ACATTGGAT
1 GTGCGGGAGCCTCGAG-CACCATAGGCACCCT-GGTGCCTCGGAT
**
15911569 GTGC-GGATGCCTCGAGCACCAGGGGCACCCTGGTGCCTCGGAT
1 GTGCGGGA-GCCTCGAGCACCATAGGCACCCTGGTGCCTCGGAT
15911612 GTGCGGG
1 GTGCGGG
15911619 CTAAAGAAAA
Statistics
Matches: 247, Mismatches: 41, Indels: 35
0.76 0.13 0.11
Matches are distributed among these distances:
41 2 0.01
42 64 0.26
43 175 0.71
44 6 0.02
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGAGCACCATAGGCACCCTGGTGCCTCGGAT
Found at i:15923768 original size:43 final size:43
Alignment explanation
Indices: 15923636--15924345 Score: 602
Period size: 43 Copynumber: 16.7 Consensus size: 43
15923626 CACATTGCTG
* * * * * *
15923636 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGAC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* ** * * * * * * *
15923679 GTCAGTGGTGAGGGAGCCTCGCG-AGCATCGG-TACCTTGGTGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CC
* ** * *
15923721 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGAAAAACTAGGCT
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * * * **
15923764 CTTGGTTGTGCAGGAGCCTCGGTG-ACCATCAGC-ACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGG-GCACCATCGGCAACCTAGGCC
* * * * **
15923806 CTCGGAT-GTGCGGGAGCCTTGGGCACCATCGAC-ACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
** * * * * *
15923848 CAAGGAT-GTGCGAGAGCCTC-GGTACCATTGGCAACCTAAGAC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
15923890 CTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGTC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * * * *
15923933 CTTGGTAGTACGGGTGCCTCGGGCATCATCGGTAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * * *
15923976 CTTGGTCGTACGAGAACCTC-GGCACCATCTGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
*
15924018 CTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * *
15924061 CTTGGTCGTGCGGGAGCCTCGGACACCATCGACGACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * ** * *
15924104 CTTGGTCGTACGAGAGCCTCGGGTGCCATCGGC-ACCTCGGCG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
**
15924146 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
15924189 CTTGGTCGTGCGGGAGCCTC-GGCACCATCGGTAACCTAAGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * * **
15924231 CTTGGTCATGCGAGAGCCTCGGGCCCCATCGATAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
*
15924274 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTA-GGCC
* *
15924318 C-TGGTCGTGTGAGAGCCTCGGGCACCAT
1 CTTGGTCGTGCGGGAGCCTCGGGCACCAT
15924346 TGACACCCTC
Statistics
Matches: 535, Mismatches: 115, Indels: 34
0.78 0.17 0.05
Matches are distributed among these distances:
41 17 0.03
42 201 0.38
43 307 0.57
44 10 0.02
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.19
Consensus pattern (43 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
Found at i:15924011 original size:85 final size:85
Alignment explanation
Indices: 15923720--15924345 Score: 567
Period size: 85 Copynumber: 7.4 Consensus size: 85
15923710 TACCTTGGTG
* * * * * * *
15923720 CCTTGGAT-GTGCGGGAGCCTCGGACACCATCGAAAAACTAGGCTCTTGGTTGTGCAGGAGCCTC
1 CCTTGG-TCGTGCGAGAGCCTCGGGCACCATCG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTC
* * *
15923784 GGTG-ACCATCAGC-ACCTTGGT
64 GG-GCACCATCGGCAACCTAGGC
* * * * * ** ** *
15923805 GCTCGGAT-GTGCGGGAGCCTTGGGCACCATCG-ACACCTTGGTGCAAGGAT-GTGCGAGAGCCT
1 CCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGCA-ACCTAGGCCCTTGG-TCGTGCGGGAGCCT
* * * *
15923867 C-GGTACCATTGGCAACCTAAGA
63 CGGGCACCATCGGCAACCTAGGC
* * * *
15923889 CCTTGGTCGTGC-AGGAGCCTCGGGCACCATCGGCAACCTAGGTCCTTGGTAGTACGGGTGCCTC
1 CCTTGGTCGTGCGA-GAGCCTCGGGCACCATC-GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC
* *
15923953 GGGCATCATCGGTAACCTAGGC
64 GGGCACCATCGGCAACCTAGGC
* *
15923975 CCTTGGTCGTACGAGAACCTC-GGCACCATCTGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
1 CCTTGGTCGTGCGAGAGCCTCGGGCACCATC-GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
*
15924039 GACACCATCGGCAACCTAGGC
65 GGCACCATCGGCAACCTAGGC
* * * * *
15924060 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGACGACCTAGGCCCTTGGTCGTACGAGAGCCTCG
1 CCTTGGTCGTGCGAGAGCCTCGGGCACCATCG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
** *
15924125 GGTGCCATCGGC-ACCTCGGC
65 GGCACCATCGGCAACCTAGGC
* * **
15924145 GCTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC
1 CCTTGG-TCGTGCGAGAGCCTCGGGCACCATC-GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC
* *
15924209 -GGCACCATCGGTAACCTAAGC
64 GGGCACCATCGGCAACCTAGGC
* * * *
15924230 CCTTGGTCATGCGAGAGCCTCGGGCCCCATCGATAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
1 CCTTGGTCGTGCGAGAGCCTCGGGCACCATCG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
15924295 GGCACCATCGGCAACCTAGGGC
65 GGCACCATCGGCAACCTA-GGC
*
15924317 CC-TGGTCGTGTGAGAGCCTCGGGCACCAT
1 CCTTGGTCGTGCGAGAGCCTCGGGCACCAT
15924346 TGACACCCTC
Statistics
Matches: 443, Mismatches: 78, Indels: 39
0.79 0.14 0.07
Matches are distributed among these distances:
82 1 0.00
83 10 0.02
84 60 0.14
85 245 0.55
86 122 0.28
87 5 0.01
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.19
Consensus pattern (85 bp):
CCTTGGTCGTGCGAGAGCCTCGGGCACCATCGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
GCACCATCGGCAACCTAGGC
Found at i:15924021 original size:128 final size:129
Alignment explanation
Indices: 15923636--15924345 Score: 617
Period size: 128 Copynumber: 5.6 Consensus size: 129
15923626 CACATTGCTG
* * * * * * ** * * *
15923636 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGACGTCAGTGGTGAGGGAGCCTCGC
1 CTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * * * * * * *
15923701 G-AGCATCGGT-ACCTTGGTGCCTTGGAT-GTGCGGGAGCCTCGGACACCATC-GAAAAACTAGG
66 GCACCATCGGTAACCTAGG-CCCTTGG-TCGTACGAGAGCCTCGGGCACCATCTG-CAACCTAGG
*
15923762 CT
128 CC
* * ** * * ** * *
15923764 CTTGGTTGTGCAGGAGCCTCGGTGACCATCAGC-ACCTTGGTGCTCGGAT-GTGCGGGAGCCTTG
1 CTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
* ** ** * * *
15923827 GGCACCATC-G-ACACCTTGGTGCAAGGAT-GTGCGAGAGCCTC-GGTACCAT-TGGCAACCTAA
65 GGCACCATCGGTA-ACCTAGGCCCTTGG-TCGTACGAGAGCCTCGGGCACCATCT-GCAACCTAG
*
15923887 GAC
127 GCC
* * * * * *
15923890 CTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGTCCTTGGTAGTACGGGTGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
15923955 GCATCATCGGTAACCTAGGCCCTTGGTCGTACGAGAACCTC-GGCACCATCTGCAACCTAGGCC
66 GCACCATCGGTAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCTGCAACCTAGGCC
15924018 CTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *** ** * * *
15924083 ACACCATCGACGACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGTGCCATCGGC-ACCTCGGCG
66 GCACCATCGGTAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCTGCAACCTAGGCC
*
15924146 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-
1 CTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* * * * *
15924209 GGCACCATCGGTAACCTAAGCCCTTGGTCATGCGAGAGCCTCGGGCCCCATC-GATAACCTAGGC
65 GGCACCATCGGTAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCTG-CAACCTAGGC
15924273 C
129 C
* * * *
15924274 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGGCCC-TGGTCGTGTGAGAGCCTCG
1 CTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA-GGCCCTTGGTCGTGCGGGAGCCTCG
15924338 GGCACCAT
65 GGCACCAT
15924346 TGACACCCTC
Statistics
Matches: 478, Mismatches: 85, Indels: 37
0.80 0.14 0.06
Matches are distributed among these distances:
126 43 0.09
127 116 0.24
128 294 0.62
129 25 0.05
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.19
Consensus pattern (129 bp):
CTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
GCACCATCGGTAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCTGCAACCTAGGCC
Found at i:15939048 original size:24 final size:24
Alignment explanation
Indices: 15939021--15939067 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
15939011 GCCGGTTAGG
*
15939021 TTCCCGGCGGTGCTCCGGCGAGCT
1 TTCCCGGCGGTGATCCGGCGAGCT
*
15939045 TTCCCGGCGGTGATCCGGTGAGC
1 TTCCCGGCGGTGATCCGGCGAGC
15939068 CATCCTGGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.06, C:0.34, G:0.38, T:0.21
Consensus pattern (24 bp):
TTCCCGGCGGTGATCCGGCGAGCT
Found at i:15939669 original size:24 final size:24
Alignment explanation
Indices: 15939615--15939693 Score: 90
Period size: 24 Copynumber: 3.3 Consensus size: 24
15939605 ACCGGTTAGG
*
15939615 TTCCCGGCGGTGCTCCGGCGATCCA
1 TTCCCGGCGGTGCTCCGGCGA-GCA
*
15939640 TT-CCGGCGGTGCTCCGGCGAGCT
1 TTCCCGGCGGTGCTCCGGCGAGCA
* *
15939663 TTCCCGGTGGTGCTCCGGTGAGCCA
1 TTCCCGGCGGTGCTCCGGCGAG-CA
15939688 -TCCCGG
1 TTCCCGG
15939694 AATATAGAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
23 3 0.06
24 41 0.87
25 3 0.06
ACGTcount: A:0.06, C:0.37, G:0.35, T:0.22
Consensus pattern (24 bp):
TTCCCGGCGGTGCTCCGGCGAGCA
Found at i:15940181 original size:43 final size:43
Alignment explanation
Indices: 15939998--15940815 Score: 842
Period size: 42 Copynumber: 19.3 Consensus size: 43
15939988 ACACCTCAGA
* * * *
15939998 CACCATCGGCAAACTAGGCTCTTGGTTGTGCAGGAGCCTCGGTG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-G
* * ** * *
15940042 -ACCATCAGC-ACCTTGGTGCTCGGAT-GTGCGGGAGCCTTGGG
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
* * ** ** *
15940083 CACCATTGGC-ACCTTGGTGCAAGGAT-GTGCGAGAGCCTC-GG
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
* * * *
15940124 CACCATTGGCAACCTAGGACCTTGGTCGTACGGGAGTCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * * *
15940167 CACCATCAGTAACCTAGGCCCTTGGTCGTACGAGAGCCTC-GG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* *
15940209 CACCATCCGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * *
15940252 CACCCA-CGGCAACCTAGGCCCTTGGTCGTACGGGAGCTTCGGA
1 CA-CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * * * *
15940295 CACCATCGGC-ACCTTGGCGCTTAGAT-GTACGGGAGCCTCGGA
1 CACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGG
* * *
15940337 CACCATCAGCAACCTAGGCCCTTGGAT-GTGCGGAAGCCTCGGA
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
* * *
15940380 CACCATCGGCAACCTAGGCACTTGGTCGTGCGGGAGTCTC-AG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * * *
15940422 CACCATCGGCAACCTAGGCACTTGGTCGTTCGGGAGTCTC-AG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * * *
15940464 CACCATCGGCAAGCTAGGCCCCTGGTCGTGCGAGAGCTTC-GG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* *
15940506 CACCATCGGCAACCTAGGCCCCTGGTCATGCGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* *
15940549 CACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCGTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * * *
15940592 CACCATCAGCAACCTAGGCCCCTGGTCGTGCGGGATCTTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* *
15940635 CACTATCGGC-ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
** ** * *
15940677 CACCATCGGC-ACCTTCGTACTTGGAT-GTACGGGAGCCTCGGA
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
15940719 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * *
15940762 CACTATCGGTAACCTAGGCCCTTGGTCATGCGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
15940805 CACCATCGGCA
1 CACCATCGGCA
15940816 CCTTGCTGCC
Statistics
Matches: 665, Mismatches: 93, Indels: 33
0.84 0.12 0.04
Matches are distributed among these distances:
41 14 0.02
42 334 0.50
43 314 0.47
44 3 0.00
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.18
Consensus pattern (43 bp):
CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
Found at i:15940211 original size:85 final size:85
Alignment explanation
Indices: 15939998--15940815 Score: 834
Period size: 85 Copynumber: 9.6 Consensus size: 85
15939988 ACACCTCAGA
* * * * * * * **
15939998 CACCATCGGCAAACTAGGCTCTTGGTTGTGCAGGAGCCTCGGTGACCATCAGC-ACCTTGGTGCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCT
* *
15940062 CGGAT-GTGCGGGAGCCTTGGG
65 TGG-TCGTGCGGGAGCCTCGGG
* * ** ** * * *
15940083 CACCATTGGC-ACCTTGGTGCAAGGAT-GTGCGAGAGCCTCGGCACCATTGGCAACCTAGGACCT
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCT
* *
15940146 TGGTCGTACGGGAGTCTCGGG
65 TGGTCGTGCGGGAGCCTCGGG
* * * * *
15940167 CACCATCAGTAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGCACCATCCGCAACCTAGGCCCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTT
*
15940232 GGTCGTGCGGGAGCCTCGGA
66 GGTCGTGCGGGAGCCTCGGG
* * * *
15940252 CACCCA-CGGCAACCTAGGCCCTTGGTCGTACGGGAGCTTCGGACACCATCGGC-ACCTTGGCGC
1 CA-CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCC
* * *
15940315 TTAGAT-GTACGGGAGCCTCGGA
64 TT-GGTCGTGCGGGAGCCTCGGG
* * *
15940337 CACCATCAGCAACCTAGGCCCTTGGAT-GTGCGGAAGCCTCGGACACCATCGGCAACCTAGGCAC
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCC
* *
15940401 TTGGTCGTGCGGGAGTCTC-AG
64 TTGGTCGTGCGGGAGCCTCGGG
* * * * * *
15940422 CACCATCGGCAACCTAGGCACTTGGTCGTTCGGGAGTCTCAGCACCATCGGCAAGCTAGGCCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTT
* *
15940487 GGTCGTGCGAGAGCTTC-GG
66 GGTCGTGCGGGAGCCTCGGG
* * *
15940506 CACCATCGGCAACCTAGGCCCCTGGTCATGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCT
*
15940571 TGGTCGTGCGGGAGCGTCGGG
65 TGGTCGTGCGGGAGCCTCGGG
* * * * * *
15940592 CACCATCAGCAACCTAGGCCCCTGGTCGTGCGGGATCTTCGGGCACTATCGGC-ACCTAGGCCCC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCT
15940656 TGGTCGTGCGGGAGCCTCGGG
65 TGGTCGTGCGGGAGCCTCGGG
** ** *
15940677 CACCATCGGC-ACCTTCGTACTTGGAT-GTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCC
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCC
15940740 TTGGTCGTGCGGGAGCCTCGGG
64 TTGGTCGTGCGGGAGCCTCGGG
* * *
15940762 CACTATCGGTAACCTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCA
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCA
15940816 CCTTGCTGCC
Statistics
Matches: 611, Mismatches: 101, Indels: 41
0.81 0.13 0.05
Matches are distributed among these distances:
83 10 0.02
84 154 0.25
85 327 0.54
86 118 0.19
87 2 0.00
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.18
Consensus pattern (85 bp):
CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTT
GGTCGTGCGGGAGCCTCGGG
Found at i:15949401 original size:24 final size:24
Alignment explanation
Indices: 15949330--15949401 Score: 90
Period size: 24 Copynumber: 3.0 Consensus size: 24
15949320 TTAGGTTCCA
* *
15949330 GGCGGTGCTCCGGCGATCCATTCC
1 GGCGGTGCTCCGGCGAGCCATCCC
**
15949354 GGCGGTGCTCCGGCGAGCTTTCCC
1 GGCGGTGCTCCGGCGAGCCATCCC
* *
15949378 GGTGGTGCTCCGGTGAGCCATCCC
1 GGCGGTGCTCCGGCGAGCCATCCC
15949402 AGAATATAGA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.07, C:0.36, G:0.36, T:0.21
Consensus pattern (24 bp):
GGCGGTGCTCCGGCGAGCCATCCC
Found at i:15949786 original size:42 final size:42
Alignment explanation
Indices: 15949732--15949837 Score: 119
Period size: 42 Copynumber: 2.5 Consensus size: 42
15949722 GGCTCTTGGT
* *
15949732 TGTGCAGGAGCCTCGGTG-ACCATCAGCACCTTGGTGCTCA-GA
1 TGTGCGGGAGCCTCGG-GCACCATCAGCACCTTGGTGC-AAGGA
* *
15949774 TGTGCGGGAGCCTTGGGCACCATCGGCACCTTGGTGCAAGGA
1 TGTGCGGGAGCCTCGGGCACCATCAGCACCTTGGTGCAAGGA
* *
15949816 TGTGCGAGAGCCT-TGGCACCAT
1 TGTGCGGGAGCCTCGGGCACCAT
15949838 TGGCAGCCTA
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
41 10 0.18
42 46 0.82
ACGTcount: A:0.18, C:0.27, G:0.34, T:0.21
Consensus pattern (42 bp):
TGTGCGGGAGCCTCGGGCACCATCAGCACCTTGGTGCAAGGA
Found at i:15949891 original size:43 final size:43
Alignment explanation
Indices: 15949699--15950574 Score: 773
Period size: 43 Copynumber: 20.6 Consensus size: 43
15949689 GCCTCGGACA
* * * * *
15949699 CCTCGGACACCATCGGCAAACTAGGCTCTTGGTTGTGCAGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * ** * *
15949742 CCTCGGTG-ACCATCAGC-ACCTTGGTGCTCAGAT-GTGCGGGAG
1 CCTCGG-GCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAG
* * ** ** *
15949784 CCTTGGGCACCATCGGC-ACCTTGGTGCAAGGAT-GTGCGAGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
* * * * *
15949826 CCT-TGGCACCATTGGCAGCCTAGGACCTTGGTCGTACGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
15949868 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * * *
15949911 CCTCGAGCACCATCGGTAACCTAGGCCCTTGGTCATGCGAGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
15949954 CCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * *
15949996 CCTCGGACACCATCGGCAACCTAGGCCCTTAGTCGTACGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * * * * *
15950039 CCTCGGACACCATCGG-TAGCTTGGCGCTTGGAT-GTACGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
* * * **
15950081 CCTCGGGCACCATCCGCATCCTAGGCCCGTGGAT-GTGCGAAAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
* * *
15950124 CCTCGGACACTATCGGCAACCTAGGCACTTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * * * *
15950167 TCT-TGGTACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * * *
15950209 CCT-TGGAACCATCGACAACCTAGGCCCCTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
15950251 CGTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * * *
15950294 CGTCGAGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* ** ** *
15950337 CCTCGGGCACCGTCGGC-ACCTTCGTGCTTGGAT-GTACGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
* *
15950379 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * *
15950422 CCTCGAGCACCATCGGTAACCTAGGCCCTTGGTCATGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * *
15950465 CCTCGGGCACCAGCGGC-ACCTTACTG-CCTCGGAT-GTGCGGGAG
1 CCTCGGGCACCATCGGCAACC-TA-GGCCCTTGG-TCGTGCGGGAG
** * * * **
15950508 CCTCAAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
** *
15950550 CCTCGGATACCATAGGCAACCTAGG
1 CCTCGGGCACCATCGGCAACCTAGG
15950575 ACGTTGGATG
Statistics
Matches: 688, Mismatches: 125, Indels: 40
0.81 0.15 0.05
Matches are distributed among these distances:
41 16 0.02
42 275 0.40
43 395 0.57
44 2 0.00
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.18
Consensus pattern (43 bp):
CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
Found at i:15949976 original size:128 final size:129
Alignment explanation
Indices: 15949818--15950482 Score: 803
Period size: 128 Copynumber: 5.2 Consensus size: 129
15949808 TGCAAGGATG
* * * * * *
15949818 TGCGAGAGCCT-TGGCACCATTGGCAGCCTAGGACCTTGGTCGTACGGGAGCCTCGGGCACCATC
1 TGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATC
15949882 GGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCATCGGTAACCTAGGCCCTTGGTCA
66 GGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCATCGGTAACCTAGGCCCTTGGTCA
15949946 TGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATC
1 TGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATC
* * * *
15950010 GGCAACCTAGGCCCTTAGTCGTACGGGAGCCTCG-GACACCATCGGT-AGCTTGGCGCTTGG--A
66 GGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGAG-CACCATCGGTAACCTAGGCCCTTGGTCA
* * * * ** *
15950071 TGTACGGGAGCCTCGGGCACCATCCGCATCCTAGGCCCGTGGAT-GTGCGAAAGCCTCGGACACT
1 TG--CGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACC
* * * * * * *
15950135 ATCGGCAACCTAGGCACTTGGTCGTGCGGGAGTCTTG-GTACCATCGGCAACCTAGGCCCCTGGT
63 ATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCATCGGTAACCTAGGCCCTTGGT
*
15950199 CG
128 CA
* * * * * *
15950201 TGCGAGAGCCT-TGGAACCATCGACAACCTAGGCCCCTGGTCGTGCGGGAGCGTCGGGCACCATC
1 TGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATC
* * * * *
15950265 GGCAACCTAGGCCCCTGGTCGTGCGGGAGCGTCGAGCACCATCGGTAACCTAGGCCCCTGGTCG
66 GGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCATCGGTAACCTAGGCCCTTGGTCA
* * ** ** *
15950329 TGCGGGAGCCTCGGGCACCGTCGGC-ACCTTCGTGCTTGGAT-GTACGGGAGCCTCGGACACCAT
1 TGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCAT
15950392 CGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCATCGGTAACCTAGGCCCTTGGTCA
65 CGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCATCGGTAACCTAGGCCCTTGGTCA
* *
15950457 TGCGGGAGCCTCGGGCACCAGCGGCA
1 TGCGAGAGCCTCGGGCACCATCGGCA
15950483 CCTTACTGCC
Statistics
Matches: 456, Mismatches: 67, Indels: 27
0.83 0.12 0.05
Matches are distributed among these distances:
125 3 0.01
126 1 0.00
127 98 0.21
128 341 0.75
129 11 0.02
130 2 0.00
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (129 bp):
TGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATC
GGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCATCGGTAACCTAGGCCCTTGGTCA
Found at i:15949981 original size:85 final size:85
Alignment explanation
Indices: 15949699--15950574 Score: 760
Period size: 85 Copynumber: 10.3 Consensus size: 85
15949689 GCCTCGGACA
* * * * *
15949699 CCTCGGACACCATCGGCAAACTAGGCTCTTGGTTGTGCAGGAGCCTCGGTG-ACCATCAGC-ACC
1 CCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-GCACCATCGGCAACC
* ** * *
15949762 TTGGTGCTCAGAT-GTGCGGGAG
64 TAGGCCCT-TGGTCGTGCGGGAG
* * ** ** * * * *
15949784 CCTTGGGCACCATCGGC-ACCTTGGTGCAAGGAT-GTGCGAGAGCCT-TGGCACCATTGGCAGCC
1 CC-TCGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
15949846 TAGGACCTTGGTCGTACGGGAG
64 TAGGCCCTTGGTCGTGCGGGAG
* * *
15949868 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCATCGGTAACCT
1 CCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT
* *
15949933 AGGCCCTTGGTCATGCGAGAG
65 AGGCCCTTGGTCGTGCGGGAG
*
15949954 CCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
1 CCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTA
* *
15950019 GGCCCTTAGTCGTACGGGAG
66 GGCCCTTGGTCGTGCGGGAG
* * * * * * *
15950039 CCTCGGACACCATCGG-TAGCTTGGCGCTTGGAT-GTACGGGAGCCTCGGGCACCATCCGCATCC
1 CCTCGG-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* **
15950102 TAGGCCCGTGGAT-GTGCGAAAG
64 TAGGCCCTTGG-TCGTGCGGGAG
* * * * *
15950124 CCTCGGACACTATCGGCAACCTAGGCACTTGGTCGTGCGGGAGTCT-TGGTACCATCGGCAACCT
1 CCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT
* *
15950188 AGGCCCCTGGTCGTGCGAGAG
65 AGGCCCTTGGTCGTGCGGGAG
* * * * *
15950209 CCTTGGAACCATCGACAACCTAGGCCCCTGGTCGTGCGGGAGCGTCGGGCACCATCGGCAACCTA
1 CCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTA
*
15950274 GGCCCCTGGTCGTGCGGGAG
66 GGCCCTTGGTCGTGCGGGAG
* * * *
15950294 CGTCGAGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCGTCGGC-ACCT
1 CCTCG-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT
** ** *
15950358 TCGTGCTTGGAT-GTACGGGAG
65 AGGCCCTTGG-TCGTGCGGGAG
* * *
15950379 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCATCGGTAACCT
1 CCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT
*
15950444 AGGCCCTTGGTCATGCGGGAG
65 AGGCCCTTGGTCGTGCGGGAG
* * * ** * *
15950465 CCTCGGGCACCAGCGGC-ACCTTACTG-CCTCGGAT-GTGCGGGAGCCTCAAGCAGCATTGGC-A
1 CCTC-GGCACCATCGGCAACC-TA-GGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAA
* **
15950526 CCTTGGTGCTTGGAT-GTGCGGGAG
62 CCTAGGCCCTTGG-TCGTGCGGGAG
* *
15950550 CCTCGGATACCATAGGCAACCTAGG
1 CCTCGG-CACCATCGGCAACCTAGG
15950575 ACGTTGGATG
Statistics
Matches: 640, Mismatches: 123, Indels: 57
0.78 0.15 0.07
Matches are distributed among these distances:
82 1 0.00
83 11 0.02
84 85 0.13
85 358 0.56
86 181 0.28
87 4 0.01
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.18
Consensus pattern (85 bp):
CCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTA
GGCCCTTGGTCGTGCGGGAG
Found at i:15950574 original size:128 final size:128
Alignment explanation
Indices: 15949859--15950554 Score: 591
Period size: 128 Copynumber: 5.4 Consensus size: 128
15949849 GACCTTGGTC
* * *
15949859 GTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCAT
1 GTACGGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
* * * ** ** *
15949924 CGGTAACCTAGGCCCTTGGTCATGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGG-T
66 CGGTAACCTAGGCCCCTGGTCATGCGGGAGCCTCGGGCACCGTCGGC-ACCTTCGTGCTCGGAT
* * * *
15949986 CGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTAGTCGTACGGGAGCCTCG-GACACC
1 -GTACGGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-CACC
* * * * * * * *
15950050 ATCGGT-AGCTTGGCGCTTGG--ATGTACGGGAGCCTCGGGCACCATCCGCATCC-TAG-GCCCG
64 ATCGGTAACCTAGGCCCCTGGTCATG--CGGGAGCCTCGGGCACCGTCGGCA-CCTTCGTGCTC-
15950110 TGGAT
125 -GGAT
* ** * * * * * *
15950115 GTGCGAAAGCCTCGGACACTATCGGCAACCTAGGCACTTGGTCGTGCGGGAGTCTTG-GTACCAT
1 GTACGGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
* * * * * * * * *
15950179 CGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCT-TGGAACCATCGACAACC-TAG-GCCCCTGG-
66 CGGTAACCTAGGCCCCTGGTCATGCGGGAGCCTCGGGCACCGTCGGC-ACCTTCGTG-CTC-GGA
15950240 T
128 T
* * * * * *
15950241 CGTGCGGGAGCGTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCGTCGAGCACCA
1 -GTACGGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCA
* *
15950306 TCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCGTCGGCACCTTCGTGCTTGGAT
65 TCGGTAACCTAGGCCCCTGGTCATGCGGGAGCCTCGGGCACCGTCGGCACCTTCGTGCTCGGAT
* *
15950370 GTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCAT
1 GTACGGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
*
15950435 CGGTAACCTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCAG-CGGCACCTTAC-TGCCTCGGA
66 CGGTAACCTAGGCCCCTGGTCATGCGGGAGCCTCGGGCACC-GTCGGCACCTT-CGTG-CTCGGA
15950498 T
128 T
* * * * **
15950499 GTGCGGGAGCCTCA-AGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCG
1 GTACGGGAGCCTCAGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
15950555 GATACCATAG
Statistics
Matches: 474, Mismatches: 70, Indels: 48
0.80 0.12 0.08
Matches are distributed among these distances:
125 3 0.01
126 2 0.00
127 96 0.20
128 327 0.69
129 43 0.09
130 3 0.01
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (128 bp):
GTACGGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
CGGTAACCTAGGCCCCTGGTCATGCGGGAGCCTCGGGCACCGTCGGCACCTTCGTGCTCGGAT
Found at i:15950601 original size:171 final size:171
Alignment explanation
Indices: 15949859--15950581 Score: 574
Period size: 171 Copynumber: 4.2 Consensus size: 171
15949849 GACCTTGGTC
* * * *
15949859 GTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCAT
1 GTACGGGAGCCTCGGACACCATAGGCAACCTAGGACCTTGGTCGTACGGAAGCCTCGAGCACCAT
* * * * * *
15949924 CGGTAACCTAGGCCCTTGGTCATGCGAGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGGTCG
66 CGGCAACCTAGGCCCCTGGTCATGCGGGAGCCTCGAGCACCAGCGGTAACCTAGGCCCCTGGTCG
* ** ** *
15949988 TGCGGGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTAG-T
131 TGCGGGAGCCTCAAG-CACCATCGGC-ACCTTCGTGCTTGGAT
* * * * * *
15950029 CGTACGGGAGCCTCGGACACCATCGG-TAGCTTGG-CGCTTGGAT-GTACGGGAGCCTCGGGCAC
1 -GTACGGGAGCCTCGGACACCATAGGCAACCTAGGAC-CTTGG-TCGTACGGAAGCCTCGAGCAC
* * * * ** * * * * *
15950091 CATCCGCATCCTAGGCCCGTGGAT-GTGCGAAAGCCTCG-GACACTATCGGCAACCTAGGCACTT
63 CATCGGCAACCTAGGCCCCTGG-TCATGCGGGAGCCTCGAG-CACCAGCGGTAACCTAGGCCCCT
* ** * ** ** *
15950154 GGTCGTGCGGGAGTCT-TGGTACCATCGGCAACCTAGGCCCCTGG-T
126 GGTCGTGCGGGAGCCTCAAGCACCATCGGC-ACCTTCGTGCTTGGAT
* * * * * * * * * * *
15950199 CGTGCGAGAGCCTTGGA-ACCATCGACAACCTAGGCCCCTGGTCGTGCGGGAGCGTCGGGCACCA
1 -GTACGGGAGCCTCGGACACCATAGGCAACCTAGGACCTTGGTCGTACGGAAGCCTCGAGCACCA
* * *
15950263 TCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCGTCGAGCACCATCGGTAACCTAGGCCCCTGGTC
65 TCGGCAACCTAGGCCCCTGGTCATGCGGGAGCCTCGAGCACCAGCGGTAACCTAGGCCCCTGGTC
** *
15950328 GTGCGGGAGCCTCGGGCACCGTCGGCACCTTCGTGCTTGGAT
130 GTGCGGGAGCCTCAAGCACCATCGGCACCTTCGTGCTTGGAT
* * *
15950370 GTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCAT
1 GTACGGGAGCCTCGGACACCATAGGCAACCTAGGACCTTGGTCGTACGGAAGCCTCGAGCACCAT
* * * * * *
15950435 CGGTAACCTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCAGCGG-CACCTTACTGCCTC-GGA
66 CGGCAACCTAGGCCCCTGGTCATGCGGGAGCCTCGAGCACCAGCGGTAACC-TA-GGCCCCTGG-
* * *
15950498 T-GTGCGGGAGCCTCAAGCAGCATTGGCACCTTGGTGCTTGGAT
128 TCGTGCGGGAGCCTCAAGCACCATCGGCACCTTCGTGCTTGGAT
* * *
15950541 GTGCGGGAGCCTCGGATACCATAGGCAACCTAGGACGTTGG
1 GTACGGGAGCCTCGGACACCATAGGCAACCTAGGACCTTGG
15950582 ATGTTCGAAT
Statistics
Matches: 462, Mismatches: 74, Indels: 32
0.81 0.13 0.06
Matches are distributed among these distances:
169 10 0.02
170 211 0.46
171 236 0.51
172 5 0.01
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (171 bp):
GTACGGGAGCCTCGGACACCATAGGCAACCTAGGACCTTGGTCGTACGGAAGCCTCGAGCACCAT
CGGCAACCTAGGCCCCTGGTCATGCGGGAGCCTCGAGCACCAGCGGTAACCTAGGCCCCTGGTCG
TGCGGGAGCCTCAAGCACCATCGGCACCTTCGTGCTTGGAT
Found at i:15965190 original size:24 final size:24
Alignment explanation
Indices: 15965115--15965191 Score: 91
Period size: 24 Copynumber: 3.2 Consensus size: 24
15965105 CCGGTTAGGT
* *
15965115 TCCCGGTGGTGCTCCGACGATCCA
1 TCCCGGCGGTGCTCCGACGAGCCA
* * **
15965139 TTCCGGCGGTGCTCCGGCGAGCTT
1 TCCCGGCGGTGCTCCGACGAGCCA
*
15965163 TCCCGGCGGTGCTCCGATGAGCCA
1 TCCCGGCGGTGCTCCGACGAGCCA
15965187 TCCCG
1 TCCCG
15965192 AAATATAGAA
Statistics
Matches: 42, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.09, C:0.38, G:0.32, T:0.21
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGACGAGCCA
Found at i:15965534 original size:42 final size:42
Alignment explanation
Indices: 15965470--15965576 Score: 119
Period size: 42 Copynumber: 2.6 Consensus size: 42
15965460 GTGCCTTGGT
* * **
15965470 TGTGCAGGAGCCTCGGTG-ACCATCAGCACCTTAGTGCTCGGA
1 TGTGCGGGAGCCTTGG-GCACCATCAGCACCTTAGTGCAAGGA
* * *
15965512 TGTGCGGGAGCCTTGGGCACCATCGGCACTTTGGTGCAAGGA
1 TGTGCGGGAGCCTTGGGCACCATCAGCACCTTAGTGCAAGGA
*
15965554 TGTGCGAGAGCCTT-GGCACCATC
1 TGTGCGGGAGCCTTGGGCACCATC
15965577 GGCAACCTAG
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
41 10 0.18
42 46 0.82
ACGTcount: A:0.18, C:0.27, G:0.34, T:0.21
Consensus pattern (42 bp):
TGTGCGGGAGCCTTGGGCACCATCAGCACCTTAGTGCAAGGA
Found at i:15965629 original size:43 final size:43
Alignment explanation
Indices: 15965555--15966226 Score: 804
Period size: 43 Copynumber: 15.8 Consensus size: 43
15965545 GTGCAAGGAT
* * *
15965555 GTGCGAGAGCCT-TGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * *
15965597 GTACGGGACCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * * *
15965640 ATGCGAGAGCCTC-GGCACCATCCGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
** * *
15965682 GTGCGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * * * * *
15965725 CTACGGGAGCCTCGGACACCATCGGC-ACCTTGGCGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TC
* * * *
15965767 GTAC-GG-GCCTCGGACACCATCGGCAACCCAGGCCCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TC
* * * *
15965808 GTGCGGAAGCCTCGGACACCATCGGCAACCTAGGCACTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* *
15965851 GTGCGGGAGTCTC-GGCACCATCGGCAACCTTGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
*
15965893 GTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* *
15965935 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * * *
15965978 GTGCGGGCGCATCGGGCACCGTCGGAAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* *
15966021 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * * *
15966064 GTGCGGGCGCATCGGGCACCGTCGGAAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* *
15966107 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * *
15966150 GTGCGGGAGCATCGGGCACCGTCGGAAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
** *
15966193 GTGCGGGATTCTCGGGCACCATCGGTAACCTAGG
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG
15966227 TGACTTCTAG
Statistics
Matches: 552, Mismatches: 70, Indels: 15
0.87 0.11 0.02
Matches are distributed among these distances:
40 18 0.03
41 18 0.03
42 141 0.26
43 375 0.68
ACGTcount: A:0.17, C:0.35, G:0.32, T:0.16
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
Done.