Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56482370
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1659275 characters in sequence are not A, C, G, or T
File 49 of 172
Found at i:15969628 original size:247 final size:247
Alignment explanation
Indices: 15969192--15969686 Score: 981
Period size: 247 Copynumber: 2.0 Consensus size: 247
15969182 CTCCGGGCGT
15969192 CGGCCTGCGGGCTTCCCATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTACGA
1 CGGCCTGCGGGCTTCCCATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTACGA
15969257 GTCAACGGGCTGGAAAACCCGTAAGGTGCAAGGAAGCTGATTGGTGGGATCCCTCACGGGTGCAC
66 GTCAACGGGCTGGAAAACCCGTAAGGTGCAAGGAAGCTGATTGGTGGGATCCCTCACGGGTGCAC
15969322 CGCCGACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGAGAGCATGCCTATCGGGACCCGAAAGA
131 CGCCGACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGAGAGCATGCCTATCGGGACCCGAAAGA
15969387 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCC
196 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCC
*
15969439 CGGCCTGCGGGCTTCCCATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGA
1 CGGCCTGCGGGCTTCCCATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTACGA
15969504 GTCAACGGGCTGGAAAACCCGTAAGGTGCAAGGAAGCTGATTGGTGGGATCCCTCACGGGTGCAC
66 GTCAACGGGCTGGAAAACCCGTAAGGTGCAAGGAAGCTGATTGGTGGGATCCCTCACGGGTGCAC
15969569 CGCCGACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGAGAGCATGCCTATCGGGACCCGAAAGA
131 CGCCGACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGAGAGCATGCCTATCGGGACCCGAAAGA
15969634 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCC
196 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCC
15969686 C
1 C
15969687 ACAGCGATAC
Statistics
Matches: 247, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
247 247 1.00
ACGTcount: A:0.23, C:0.26, G:0.34, T:0.18
Consensus pattern (247 bp):
CGGCCTGCGGGCTTCCCATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTACGA
GTCAACGGGCTGGAAAACCCGTAAGGTGCAAGGAAGCTGATTGGTGGGATCCCTCACGGGTGCAC
CGCCGACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGAGAGCATGCCTATCGGGACCCGAAAGA
TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCC
Found at i:15973654 original size:24 final size:24
Alignment explanation
Indices: 15973579--15973656 Score: 93
Period size: 24 Copynumber: 3.2 Consensus size: 24
15973569 CCGGTTAGGT
* *
15973579 TCCCGGCGGTGCTCCGGCGATCCA
1 TCCCGGCGGTGCTCTGGCGAGCCA
* **
15973603 TTCCGGCGGTGCTCTGGCGAGCTT
1 TCCCGGCGGTGCTCTGGCGAGCCA
* *
15973627 TCCCAGCGGTGCTCTGGTGAGCCA
1 TCCCGGCGGTGCTCTGGCGAGCCA
15973651 TCCCGG
1 TCCCGG
15973657 AATATTGAAA
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.08, C:0.36, G:0.35, T:0.22
Consensus pattern (24 bp):
TCCCGGCGGTGCTCTGGCGAGCCA
Found at i:15974028 original size:42 final size:42
Alignment explanation
Indices: 15973974--15974079 Score: 126
Period size: 42 Copynumber: 2.5 Consensus size: 42
15973964 GGCTCTTGGT
* **
15973974 TGTGCAGGAGCCTCGGTG-ACCATCAGCACCTTGGTGCTCGGA
1 TGTGCGGGAGCCTCGG-GCACCATCAGCACCTTGGTGCAAGGA
* *
15974016 TGTGCGGGAGCCTTGGGCACCATCGGCACCTTGGTGCAAGGA
1 TGTGCGGGAGCCTCGGGCACCATCAGCACCTTGGTGCAAGGA
* *
15974058 TGTACGAGAGCCTC-GGCACCAT
1 TGTGCGGGAGCCTCGGGCACCAT
15974080 TGGCAACCTA
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
41 9 0.16
42 46 0.84
ACGTcount: A:0.18, C:0.28, G:0.34, T:0.20
Consensus pattern (42 bp):
TGTGCGGGAGCCTCGGGCACCATCAGCACCTTGGTGCAAGGA
Found at i:15974238 original size:128 final size:127
Alignment explanation
Indices: 15974065--15974901 Score: 999
Period size: 128 Copynumber: 6.5 Consensus size: 127
15974055 GGATGTACGA
* * * **
15974065 GAGCCTCGGCACCATTGGCAACCTAGGACCTTGGTTGTATGGGAGCCTCGGGCACCATCGGTAAC
1 GAGCCTCGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAAC
* * * * *
15974130 CTAGGCCCTTGGTCGTACGGGAGCCTCGGGCATCATCGGTAACTTAGGCCCTTGGTCGTGCGG
65 CTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGG
* * * * * *
15974193 GAGCCTCGGACACCATCGGCACCTTGGCGCTTGGAT-GTACGGGAGCCTCAGACACCATCGGCAA
1 GAGCCTCGG-CACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGTAA
* * * * * *
15974257 CCTAGGCCCTTGGAT-GTGCGGAAGCCTCGGACACCATTGGTAACCTAGGCACTTGGTCGTGCGG
64 CCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGG
* * * * * *
15974321 GAGTCTCGGCACCATCGGTAACCTAGGCCCCTGGTCGTTCGAGAGCCTC-GGCACCATCGGCAAC
1 GAGCCTCGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAAC
* *
15974385 CTAGGCCCCTGGTCGTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGG
65 CTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGG
* * * *
15974448 GAGCATCAGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGCACCATCGGTAA
1 GAGCCTC-GGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAA
15974512 CCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGG
64 CCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGG
* * *
15974576 GAGCCTCGGGCACCATCGGCACCTAGGCCCCTGGTCGTGCGGGATCCTCGGGCACCATCAGTAAC
1 GAGCCTC-GGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAAC
*
15974641 CTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCCTGGTCGTGCGG
65 CTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGG
*
15974703 GAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAA
1 GAGCCTC-GGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAA
* * * * * *
15974768 CCTAGGCTCTTGGTCATGCGGGAGCCTCGGGCACCATCGG-CACCTTACTGCCTC-GGAT-GTGC
64 CCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACC-TA-GGCCCCTGG-TCGTGC
15974830 GG
126 GG
* * * ** * * *
15974832 GAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATGGGCAA
1 GAGCCTCG-GCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGTAA
15974896 CCTAGG
64 CCTAGG
15974902 ACGTTGGATG
Statistics
Matches: 633, Mismatches: 62, Indels: 28
0.88 0.09 0.04
Matches are distributed among these distances:
126 1 0.00
127 150 0.24
128 440 0.70
129 37 0.06
130 5 0.01
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (127 bp):
GAGCCTCGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACC
TAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGG
Found at i:15974916 original size:85 final size:84
Alignment explanation
Indices: 15973941--15974901 Score: 972
Period size: 85 Copynumber: 11.3 Consensus size: 84
15973931 GCCTCGGACA
* * * * * * * *
15973941 CCTCGGACACCATCGGCAAACTAGGCTCTTGGTTGTGCAGGAGCCTCGGTGACCATCAGCACCTT
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCACCTA
** *
15974006 GGTGCTCGGAT-GTGCGGGAG
65 GGCCCTTGG-TCGTGCGGGAG
* * ** ** * * *
15974026 CCTTGGGCACCATCGGC-ACCTTGGTGCAAGGAT-GTACGAGAGCCTCGGCACCATTGGCAACCT
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGCACCATCGGC-ACCT
* * **
15974089 AGGACCTTGGTTGTATGGGAG
64 AGGCCCTTGGTCGTGCGGGAG
* * * * *
15974110 CCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCATCATCGGTAACTT
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGG-CACCT
15974175 AGGCCCTTGGTCGTGCGGGAG
64 AGGCCCTTGGTCGTGCGGGAG
* * * * *
15974196 CCTCGGACACCATCGGC-ACCTTGGCGCTTGGAT-GTACGGGAGCCTCAGACACCATCGGCAACC
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC-GGCACCATCGGC-ACC
*
15974259 TAGGCCCTTGGAT-GTGCGGAAG
63 TAGGCCCTTGG-TCGTGCGGGAG
* * * * * *
15974281 CCTCGGACACCATTGGTAACCTAGGCACTTGGTCGTGCGGGAGTCTCGGCACCATCGGTAACCTA
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGG-CACCTA
* * *
15974346 GGCCCCTGGTCGTTCGAGAG
65 GGCCCTTGGTCGTGCGGGAG
*
15974366 CCTC-GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGAGCACCATCGGCAACCT
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG-GCACCATCGGC-ACCT
*
15974430 AGGCCCCTGGTCGTGCGGGAG
64 AGGCCCTTGGTCGTGCGGGAG
* * * * * *
15974451 CATCAGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGCACCATCGGTAACCTA
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGG-CACCTA
*
15974516 GGCCCCTGGTCGTGCGGGAG
65 GGCCCTTGGTCGTGCGGGAG
* *
15974536 CCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTA
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCACCTA
* *
15974601 GGCCCCTGGTCGTGCGGGAT
65 GGCCCTTGGTCGTGCGGGAG
* * *
15974621 CCTCGGGCACCATCAGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTA
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCACCTA
*
15974686 GGCCCCTGGTCGTGCGGGAG
65 GGCCCTTGGTCGTGCGGGAG
* *
15974706 CCTCGGGCACCATCAGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCT
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGG-CACCT
* *
15974771 AGGCTCTTGGTCATGCGGGAG
64 AGGCCCTTGGTCGTGCGGGAG
* * * *
15974792 CCTCGGGCACCATCGGC-ACCTTACTG-CCTCGGAT-GTGCGGGAGCCTCGAGCAGCATTGGCAC
1 CCTCGGGCACCATCGGCAACC-TA-GGCCCTTGG-TCGTGCGGGAGCCTCG-GCACCATCGGCAC
* **
15974854 CTTGGTGCTTGGAT-GTGCGGGAG
62 CTAGGCCCTTGG-TCGTGCGGGAG
* *
15974877 CCTCGGACACCATGGGCAACCTAGG
1 CCTCGGGCACCATCGGCAACCTAGG
15974902 ACGTTGGATG
Statistics
Matches: 753, Mismatches: 97, Indels: 53
0.83 0.11 0.06
Matches are distributed among these distances:
83 8 0.01
84 92 0.12
85 460 0.61
86 191 0.25
87 2 0.00
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (84 bp):
CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCACCTAG
GCCCTTGGTCGTGCGGGAG
Found at i:15974924 original size:43 final size:43
Alignment explanation
Indices: 15973941--15974901 Score: 1024
Period size: 43 Copynumber: 22.6 Consensus size: 43
15973931 GCCTCGGACA
* * * * *
15973941 CCTCGGACACCATCGGCAAACTAGGCTCTTGGTTGTGCAGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * ** *
15973984 CCTCGGTG-ACCATCAGC-ACCTTGGTGCTCGGAT-GTGCGGGAG
1 CCTCGG-GCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
* * ** ** * *
15974026 CCTTGGGCACCATCGGC-ACCTTGGTGCAAGGAT-GTACGAGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
* * * **
15974068 CCTC-GGCACCATTGGCAACCTAGGACCTTGGTTGTATGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
15974110 CCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTACGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * *
15974153 CCTCGGGCATCATCGGTAACTTAGGCCCTTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * * *
15974196 CCTCGGACACCATCGGC-ACCTTGGCGCTTGGAT-GTACGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
* * *
15974238 CCTCAGACACCATCGGCAACCTAGGCCCTTGGAT-GTGCGGAAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
* * * *
15974281 CCTCGGACACCATTGGTAACCTAGGCACTTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * * * *
15974324 TCTC-GGCACCATCGGTAACCTAGGCCCCTGGTCGTTCGAGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
15974366 CCTC-GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
15974408 CCTCGAGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * * * *
15974451 CATCAGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGAGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
15974494 CCTC-GGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
15974536 CCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
15974579 CCTCGGGCACCATCGGC-ACCTAGGCCCCTGGTCGTGCGGGAT
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * *
15974621 CCTCGGGCACCATCAGTAACCTAGGCCCCTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
15974664 CCTCGGGCACCATCGGC-ACCTAGGCCCCTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
15974706 CCTCGGGCACCATCAGCAACCTAGGCCCTTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * *
15974749 CCTCGGGCACCATCGGTAACCTAGGCTCTTGGTCATGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
15974792 CCTCGGGCACCATCGGC-ACCTTACTG-CCTCGGAT-GTGCGGGAG
1 CCTCGGGCACCATCGGCAACC-TA-GGCCCTTGG-TCGTGCGGGAG
* * * * **
15974835 CCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
* *
15974877 CCTCGGACACCATGGGCAACCTAGG
1 CCTCGGGCACCATCGGCAACCTAGG
15974902 ACGTTGGATG
Statistics
Matches: 803, Mismatches: 97, Indels: 36
0.86 0.10 0.04
Matches are distributed among these distances:
41 14 0.02
42 337 0.42
43 450 0.56
44 2 0.00
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (43 bp):
CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
Found at i:15974924 original size:128 final size:125
Alignment explanation
Indices: 15973941--15974901 Score: 943
Period size: 128 Copynumber: 7.5 Consensus size: 125
15973931 GCCTCGGACA
* * * * * *
15973941 CCTCGGACACCATCGGCAAACTAGGCTCTTGGTTGTGCAGGAGCCTCGGTG-ACCATCAG-CACC
1 CCTCGG-CACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-GCACCATCGGTAACC
* ** * * * * ** * *
15974004 TTGGTGCTCGGAT-GTGCGGGAGCCTTGGGCACCATCGGCACCTTGGTGCAAGGAT-GTACGAGA
63 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCTCGG-TCGTGCGGGA
15974067 G
125 G
* * * **
15974068 CCTCGGCACCATTGGCAACCTAGGACCTTGGTTGTATGGGAGCCTCGGGCACCATCGGTAACCTA
1 CCTCGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTA
* * * * *
15974133 GGCCCTTGGTCGTACGGGAGCCTCGGGCATCATCGGTAACTTAGGCCCTTGGTCGTGCGGGAG
65 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGG-CCTCGGTCGTGCGGGAG
* * * * * *
15974196 CCTCGGACACCATCGGCACCTTGGCGCTTGGAT-GTACGGGAGCCTCAGACACCATCGGCAACCT
1 CCTCGG-CACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGTAACCT
* * * * *
15974260 AGGCCCTTGGAT-GTGCGGAAGCCTCGGACACCATTGGTAACCTAGGCACTTGGTCGTGCGGGAG
64 AGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGC-CTCGGTCGTGCGGGAG
* * * * * *
15974324 TCTCGGCACCATCGGTAACCTAGGCCCCTGGTCGTTCGAGAGCCTC-GGCACCATCGGCAACCTA
1 CCTCGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTA
* * *
15974388 GGCCCCTGGTCGTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAG
65 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCTC-GGTCGTGCGGGAG
* * * *
15974451 CATCAGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGCACCATCGGTAACCT
1 CCTC-GGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCT
* * *
15974515 AGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAG
64 AGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCTC-GGTCGTGCGGGAG
* * *
15974579 CCTCGGGCACCATCGGCACCTAGGCCCCTGGTCGTGCGGGATCCTCGGGCACCATCAGTAACCTA
1 CCTC-GGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTA
* *
15974644 GGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCCTGGTCGTGCGGGAG
65 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCTC-GGTCGTGCGGGAG
*
15974706 CCTCGGGCACCATCAGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCT
1 CCTC-GGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCT
* * *
15974771 AGGCTCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTTACTGCCTCGGAT-GTGCGGGAG
64 AGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC-TA-GGCCTCGG-TCGTGCGGGAG
* * * ** * * *
15974835 CCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATGGGCAACCT
1 CCTCG-GCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGTAACCT
15974899 AGG
64 AGG
15974902 ACGTTGGATG
Statistics
Matches: 725, Mismatches: 86, Indels: 45
0.85 0.10 0.05
Matches are distributed among these distances:
125 1 0.00
126 45 0.06
127 187 0.26
128 450 0.62
129 37 0.05
130 5 0.01
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (125 bp):
CCTCGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAG
GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCTCGGTCGTGCGGGAG
Found at i:15974954 original size:43 final size:42
Alignment explanation
Indices: 15974784--15974960 Score: 155
Period size: 43 Copynumber: 4.1 Consensus size: 42
15974774 CTCTTGGTCA
* * * **
15974784 TGCGGGAGCCTCGGGCACCATCGGCACCTTACTGCCTCGGATG
1 TGCGGGAGCCTCGAGCAGCATGGGCACC-TGGTGCCTCGGATG
* *
15974827 TGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTG-CTTGGATG
1 TGCGGGAGCCTCGAGCAGCATGGGCACC-TGGTGCCTCGGATG
* * * *
15974869 TGCGGGAGCCTCG-GACACCATGGGCAACCTAGG-ACGTTGGATG
1 TGCGGGAGCCTCGAG-CAGCATGGGC-ACCT-GGTGCCTCGGATG
*
15974912 TGC-GGATGCCTCGAGCAGCAGGGGCACTCTGGTGCCTCGGATG
1 TGCGGGA-GCCTCGAGCAGCATGGGCAC-CTGGTGCCTCGGATG
15974955 TGCGGG
1 TGCGGG
15974961 CTAAAGAAAA
Statistics
Matches: 110, Mismatches: 15, Indels: 17
0.77 0.11 0.12
Matches are distributed among these distances:
41 1 0.01
42 36 0.33
43 70 0.64
44 3 0.03
ACGTcount: A:0.15, C:0.28, G:0.38, T:0.19
Consensus pattern (42 bp):
TGCGGGAGCCTCGAGCAGCATGGGCACCTGGTGCCTCGGATG
Found at i:15982779 original size:23 final size:23
Alignment explanation
Indices: 15982729--15982781 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
15982719 TCAGATCGCG
*
15982729 GCGAAGTGGGCGGTTCGCTGCCC
1 GCGACGTGGGCGGTTCGCTGCCC
15982752 GCGACGTGGGCGGTTCGCTGCCC
1 GCGACGTGGGCGGTTCGCTGCCC
15982775 GCGACGT
1 GCGACGT
15982782 CACGAGAACT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.08, C:0.32, G:0.43, T:0.17
Consensus pattern (23 bp):
GCGACGTGGGCGGTTCGCTGCCC
Found at i:15984166 original size:16 final size:16
Alignment explanation
Indices: 15984145--15984186 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
15984135 CACCGTCTCG
* *
15984145 GCGTGCTTCGGCACCT
1 GCGTGCTCCGACACCT
15984161 GCGTGCTCCGACACCT
1 GCGTGCTCCGACACCT
*
15984177 GCGTACTCCG
1 GCGTGCTCCG
15984187 GTCGTCGGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.10, C:0.40, G:0.29, T:0.21
Consensus pattern (16 bp):
GCGTGCTCCGACACCT
Found at i:15988807 original size:42 final size:42
Alignment explanation
Indices: 15988755--15988860 Score: 135
Period size: 42 Copynumber: 2.5 Consensus size: 42
15988745 GGTTCTTGGT
** **
15988755 TGTGCAGGAGCCTCGGTGACCATCAGCACCTTGGTGCTCGGA
1 TGTGCAGGAGCCTCGGACACCATCAGCACCTTGGTGCAAGGA
* *
15988797 TGTGCAGGAGCCTTGGACACCATCGGCACCTTGGTGCAAGGA
1 TGTGCAGGAGCCTCGGACACCATCAGCACCTTGGTGCAAGGA
15988839 TGTGC-GAGAGCCTCGG-CACCAT
1 TGTGCAG-GAGCCTCGGACACCAT
15988861 TGGTAACCTA
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
41 7 0.12
42 49 0.88
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.20
Consensus pattern (42 bp):
TGTGCAGGAGCCTCGGACACCATCAGCACCTTGGTGCAAGGA
Found at i:15988912 original size:43 final size:43
Alignment explanation
Indices: 15988840--15989462 Score: 776
Period size: 43 Copynumber: 14.6 Consensus size: 43
15988830 GTGCAAGGAT
* * * *
15988840 GTGCGAGAGCCTC-GGCACCATTGGTAACCTAGGACCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
15988882 GTACGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
15988925 GTACGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * **
15988968 ATGCGAGAGCCTC-GGCACCATCCACAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
15989010 GTGCGGGAGCCTTGGACAACATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * *
15989053 GTACGGAAGCCTCGGACACCATCGGC-ACCTTGGCGCTTGAAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG-GTC
*
15989095 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
15989138 GTGCGGAAGCCTCGGACACCATCGGCAACCTAGGCACTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
15989181 GTGCGGGAGTCTC-GGCTCCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
15989223 GTGCGAGAGCCTC-GGCACCATCGACAACCTAGGCCCCTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
15989265 GTGCGGGAGCCTCGGGCACCGTCGGCAACCTAAGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** * *
15989308 GTGCGGGAGTGTCGGGCTCCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
15989351 GTGCGGGATCCTCGGGCACCATCGGCGACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
15989394 GTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
15989436 GTGCGGGAGCCTCGGGCACCATCGGCA
1 GTGCGGGAGCCTCGGGCACCATCGGCA
15989463 CCTTGCTGCC
Statistics
Matches: 509, Mismatches: 64, Indels: 15
0.87 0.11 0.03
Matches are distributed among these distances:
42 199 0.39
43 310 0.61
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:15988998 original size:128 final size:128
Alignment explanation
Indices: 15988840--15989462 Score: 797
Period size: 128 Copynumber: 4.9 Consensus size: 128
15988830 GTGCAAGGAT
* * * *
15988840 GTGCGAGAGCCTCGGCACCATTGGTAACCTAGGACCTTGGTCGTACGGGAGCCTCGGGCACCATC
1 GTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * * *
15988905 GACAACCTAGGCCCTTGGTCGTACGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGGTC
66 GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* ** * * *
15988968 ATGCGAGAGCCTCGGCACCATCCACAACCTAGGCCCTTGGTCGTGCGGGAGCCTTGGACAACATC
1 GTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * * * * * *
15989033 GGCAACCTAGGCCCTTGGTCGTACGGAAGCCTCGGACACCATCGGC-ACCTTGGCGCTTGAAT-
66 GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTG-GTC
* * *
15989095 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGAT-GTGCGGAAGCCTCGGACACCA
1 GTGCGAGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
* * *
15989159 TCGGCAACCTAGGCACTTGGTCGTGCGGGAGTCTC-GGCTCCATCGGCAACCTAGGCCCCTGGTC
64 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * * *
15989223 GTGCGAGAGCCTCGGCACCATCGACAACCTAGGCCCCTGATCGTGCGGGAGCCTCGGGCACCGTC
1 GTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * ** *
15989288 GGCAACCTAAGCCCCTGGTCGTGCGGGAGTGTCGGGCTCCATCGGCAACCTAGGCCCCTGGTC
66 GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * * * *
15989351 GTGCGGGATCCTCGGGCACCATCGGCGACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCAT
1 GTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
*
15989416 CGGC-ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
65 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
15989463 CCTTGCTGCC
Statistics
Matches: 431, Mismatches: 56, Indels: 16
0.86 0.11 0.03
Matches are distributed among these distances:
126 1 0.00
127 106 0.25
128 273 0.63
129 51 0.12
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (128 bp):
GTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
Found at i:15989006 original size:85 final size:85
Alignment explanation
Indices: 15988840--15989462 Score: 758
Period size: 85 Copynumber: 7.3 Consensus size: 85
15988830 GTGCAAGGAT
* * * * * *
15988840 GTGCGAGAGCCTC-GGCACCATTGGTAACCTAGGACCTTGGTCGTACGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCAT
*
15988904 CGACAACCTAGGCCCTTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* * *
15988925 GTACGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGGTCATGCGAGAGCCTCGGCACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATC
**
15988990 CACAACCTAGGCCCTTGGTC
66 GGCAACCTAGGCCCTTGGTC
* * * *
15989010 GTGCGGGAGCCTTGGACAACATCGGCAACCTAGGCCCTTGGTCGTACG-GAAGCCTCGGACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAG-AGCCTCGG-CACCA
* * *
15989074 TCGGC-ACCTTGGCGCTTGAAT-
64 TCGGCAACCTAGGCCCTTG-GTC
*
15989095 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGAT-GTGCG-GAAGCCTCGGACACC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAG-AGCCTCGG-CACC
*
15989158 ATCGGCAACCTAGGCACTTGGTC
63 ATCGGCAACCTAGGCCCTTGGTC
* * *
15989181 GTGCGGGAGTCTC-GGCTCCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGCACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATC
* * *
15989245 GACAACCTAGGCCCCTGATC
66 GGCAACCTAGGCCCTTGGTC
* * * * ** *
15989265 GTGCGGGAGCCTCGGGCACCGTCGGCAACCTAAGCCCCTGGTCGTGCGGGAGTGTCGGGCTCCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCAT
*
15989330 CGGCAACCTAGGCCCCTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* * *
15989351 GTGCGGGATCCTCGGGCACCATCGGCGACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCAT
*
15989416 CGGC-ACCTAGGCCCCTGGTC
65 CGGCAACCTAGGCCCTTGGTC
15989436 GTGCGGGAGCCTCGGGCACCATCGGCA
1 GTGCGGGAGCCTCGGGCACCATCGGCA
15989463 CCTTGCTGCC
Statistics
Matches: 473, Mismatches: 54, Indels: 22
0.86 0.10 0.04
Matches are distributed among these distances:
84 37 0.08
85 279 0.59
86 157 0.33
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (85 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATC
GGCAACCTAGGCCCTTGGTC
Found at i:15989132 original size:213 final size:213
Alignment explanation
Indices: 15988847--15989462 Score: 765
Period size: 213 Copynumber: 2.9 Consensus size: 213
15988837 GATGTGCGAG
* * * * * * * *
15988847 AGCCTCGG-CACCATTGGTAACCTAGGACCTTGGTCGTACGGGAGCCTCGGGCACCATCGACAAC
1 AGCCTCGGACACCATCGGCAACCTAAGCCCCTGATCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* * *
15988911 CTAGGCCCTTGGTCGTACGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGGTCATGCGAGA
66 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGA
** * * *
15988976 GCCTCGGCACCATCCACAACCTAGGCCCTTGGTCGTGCGGGAGCCTTGGACAACATCGGCAACCT
131 GCCTCGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG-CACCATCGGCAACCT
* *
15989041 AGGCCCTTGGTCGTACGGA
195 AGGCCCCTGATCGTACGGA
** * * *
15989060 AGCCTCGGACACCATCGGC-ACCTTGGCGCTTGAAT-GTGCGGGAGCCTCGGACACCATCGGCAA
1 AGCCTCGGACACCATCGGCAACCTAAGCCCCTG-ATCGTGCGGGAGCCTCGGGCACCATCGGCAA
* * * *
15989123 CCTAGGCCCTTGGAT-GTGCGGAAGCCTCGGACACCATCGGCAACCTAGGCACTTGGTCGTGCGG
65 CCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
* * * *
15989187 GAGTCTCGGCTCCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGCACCATCGACAACC
129 GAGCCTCGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACC
* *
15989252 TAGGCCCCTGATCGTGCGGG
194 TAGGCCCCTGATCGTACGGA
* * * ** *
15989272 AGCCTCGGGCACCGTCGGCAACCTAAGCCCCTGGTCGTGCGGGAGTGTCGGGCTCCATCGGCAAC
1 AGCCTCGGACACCATCGGCAACCTAAGCCCCTGATCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* * * *
15989337 CTAGGCCCCTGGTCGTGCGGGATCCTCGGGCACCATCGGCGACCTAGGCCCCTGGTCGTGCGAGA
66 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGA
15989402 GCCTCGGGCACCATCGGC-ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
131 GCCTC-GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTC-GGCACCATCGGCA
15989463 CCTTGCTGCC
Statistics
Matches: 343, Mismatches: 52, Indels: 15
0.84 0.13 0.04
Matches are distributed among these distances:
212 47 0.14
213 263 0.77
214 33 0.10
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (213 bp):
AGCCTCGGACACCATCGGCAACCTAAGCCCCTGATCGTGCGGGAGCCTCGGGCACCATCGGCAAC
CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGA
GCCTCGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTA
GGCCCCTGATCGTACGGA
Found at i:16000697 original size:24 final size:24
Alignment explanation
Indices: 16000622--16000697 Score: 80
Period size: 24 Copynumber: 3.2 Consensus size: 24
16000612 CCGGTTAGGT
* *
16000622 TCCCAGCGGTGCTCCGGCGATCCA
1 TCCCAGCGGTGCTCCGGAGAGCCA
* **
16000646 TTCCAGCGGTGCTCCGGAGAGCTT
1 TCCCAGCGGTGCTCCGGAGAGCCA
* * *
16000670 TCCCGGTGGTGCTCCGGTGAGCCA
1 TCCCAGCGGTGCTCCGGAGAGCCA
16000694 TCCC
1 TCCC
16000698 CGAATATAGA
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.11, C:0.37, G:0.32, T:0.21
Consensus pattern (24 bp):
TCCCAGCGGTGCTCCGGAGAGCCA
Found at i:16001183 original size:43 final size:42
Alignment explanation
Indices: 16000996--16001719 Score: 771
Period size: 43 Copynumber: 17.0 Consensus size: 42
16000986 GACTCGGACA
* * * *
16000996 CCTCGGACACCATCGGCAAACTAGGCTCTTGGTTGTGCAGGAG
1 CCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * * ** * *
16001039 CCTCGGTGACCATCAGC-ACCTTGGTGCTCGGAT-GTGTGGGAG
1 CCTCGG-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
* * ** ** * *
16001081 CCTTGGGCACCATCGGC-ACCTTGGTGCAAGGAT-ATGCGAGAG
1 CC-TCGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
* * * *
16001123 CCTCTGCACCATTGGCAACCTAGGACCTTGGTCGTACGGGAG
1 CCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
16001165 CCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAG
1 CCTCG-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
16001208 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCATGCGAGAG
1 CCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
16001251 CCTCGGCACCATCCGCAACCTAGGCCCTTGGTCGTGCGGGAG
1 CCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
16001293 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAG
1 CCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * * *
16001336 CCTCGGACACCATCGG-TACCTTGGCGCTTGGAT-GTACGGGAG
1 CCTCGG-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
*
16001378 CCTCGGACACCATCGGCAACCTAGGCCCTTGGAT-GTGCGGAAG
1 CCTCGG-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
* * * *
16001421 CCTCGGACACCATCGGCAACGTAGGCCCCTGGTCGTGTGAGAG
1 CCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * *
16001464 CCTCGGCATCATCGACAACCTAGGCCCTTGGTCGTGCGAGAG
1 CCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
16001506 CCTCGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAG
1 CCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
16001548 CGTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAG
1 CCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
16001591 CCTCGGGCACCATCAGCAACCTAGGCCCCTGGTCGTGCGGGAG
1 CCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * **
16001634 CGTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTG-AAGAG
1 CCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * *
16001676 CCCCGGACACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 CCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
16001719 C
1 C
16001720 NNNNNNNNNN
Statistics
Matches: 592, Mismatches: 76, Indels: 26
0.85 0.11 0.04
Matches are distributed among these distances:
41 14 0.02
42 250 0.42
43 327 0.55
44 1 0.00
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (42 bp):
CCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
Found at i:16001270 original size:128 final size:128
Alignment explanation
Indices: 16000996--16001719 Score: 813
Period size: 128 Copynumber: 5.7 Consensus size: 128
16000986 GACTCGGACA
* * * * ** *
16000996 CCTCGGACACCATCGGCAAACTAGGCTCTTGGTTGTGCAGGAGCCTCGGTGACCATCAGC-ACCT
1 CCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCT
* ** * * * * ** **
16001060 TGGTGCTCGGAT-GTGTGGGAGCCTTGGGCACCATCGGC-ACCTTGGTGCAAGGAT-ATGCGAGA
65 AGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCATGCGAGA
16001122 G
128 G
* * * *
16001123 CCTCTGCACCATTGGCAACCTAGGACCTTGGTCGTACGGGAGCCTC-GAGCACCATCGGCAACCT
1 CCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAACCT
*
16001187 AGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCATGCGAGAG
65 AGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCATGCGAGAG
*
16001251 CCTCGGCACCATCCGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
1 CCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* * * * * *
16001316 GGCCCTTGGTCGTACGGGAGCCTCGGACACCATCGG-TACCTTGGCGCTTGG--ATGTACGGGAG
66 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCATG--CGAGAG
* *
16001378 CCTCGGACACCATCGGCAACCTAGGCCCTTGGAT-GTGCGGAAGCCTCGGACACCATCGGCAACG
1 CCTCGG-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * * * * *
16001442 TAGGCCCCTGGTCGTGTGAGAGCCTC-GGCATCATCGACAACCTAGGCCCTTGGTCGTGCGAGAG
64 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCATGCGAGAG
* * *
16001506 CCTCGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCGTCGGGCACCATCGGCAACCTA
1 CCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* * * * *
16001571 GGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCAGCAACCTAGGCCCCTGGTCGTGCGGGAG
66 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCATGCGAGAG
* * ** * *
16001634 CGTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTG-AAGAGCCCCGGACACCATCGGCAAACT
1 CCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCT
*
16001698 AAGCCCTTGGTCGTGCGGGAGC
65 AGGCCCTTGGTCGTGCGGGAGC
16001720 NNNNNNNNNN
Statistics
Matches: 512, Mismatches: 69, Indels: 31
0.84 0.11 0.05
Matches are distributed among these distances:
125 4 0.01
126 43 0.08
127 144 0.28
128 284 0.55
129 35 0.07
130 2 0.00
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (128 bp):
CCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCATGCGAGAG
Found at i:16001280 original size:85 final size:85
Alignment explanation
Indices: 16001115--16001719 Score: 774
Period size: 85 Copynumber: 7.1 Consensus size: 85
16001105 TGCAAGGATA
* * * * * *
16001115 TGCGAGAGCCTC-TGCACCATTGGCAACCTAGGACCTTGGTCGTACGGGAGCCTCGAGCACCATC
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATC
16001179 GGCAACCTAGGCCCTTGGTCG
65 GGCAACCTAGGCCCTTGGTCG
* * *
16001200 TACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCATGCGAGAGCCTCGGCACCATCC
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCG
16001265 GCAACCTAGGCCCTTGGTCG
66 GCAACCTAGGCCCTTGGTCG
* * *
16001285 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCATC
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG-CACCATC
* * *
16001350 GG-TACCTTGGCGCTTGGAT-G
65 GGCAACCTAGGCCCTTGG-TCG
* *
16001370 TACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGAT-GTGCG-GAAGCCTCGGACACCA
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAG-AGCCTCGG-CACCA
* *
16001433 TCGGCAACGTAGGCCCCTGGTCG
63 TCGGCAACCTAGGCCCTTGGTCG
* * * *
16001456 TGTGAGAGCCTC-GGCATCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCG
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCG
*
16001520 GCAACCTAGGCCCCTGGTCG
66 GCAACCTAGGCCCTTGGTCG
* * *
16001540 TGCGGGAGCGTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATC
* *
16001605 AGCAACCTAGGCCCCTGGTCG
65 GGCAACCTAGGCCCTTGGTCG
* * * *
16001626 TGCGGGAGCGTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTG-AAGAGCCCCGGACACCATC
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG-CACCATC
* *
16001690 GGCAAACTAAGCCCTTGGTCG
65 GGCAACCTAGGCCCTTGGTCG
16001711 TGCGGGAGC
1 TGCGGGAGC
16001720 NNNNNNNNNN
Statistics
Matches: 461, Mismatches: 47, Indels: 24
0.87 0.09 0.05
Matches are distributed among these distances:
84 40 0.09
85 279 0.61
86 142 0.31
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (85 bp):
TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCG
GCAACCTAGGCCCTTGGTCG
Found at i:16001403 original size:213 final size:212
Alignment explanation
Indices: 16001120--16001719 Score: 816
Period size: 213 Copynumber: 2.8 Consensus size: 212
16001110 GGATATGCGA
* * * *
16001120 GAGCCTCTG-CACCATTGGCAACCTAGGACCTTGGTCGTACGGGAGCCTC-GAGCACCATCGGCA
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTACGGGAGCCTCGGA-CACCATCGGCA
* * *
16001183 ACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCATGCGA
65 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTG-GA
16001248 GAGCCTCGGCACCATCCGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAC
129 GAGCCTCGGCACCATCCGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCAAC
*
16001313 CTAGGCCCTTGGTCGTACGG
193 CTAGGCCCCTGGTCGTACGG
* * * *
16001333 GAGCCTCGGACACCATCGG-TACCTTGGCGCTTGGAT-GTACGGGAGCCTCGGACACCATCGGCA
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCCTGG-TCGTACGGGAGCCTCGGACACCATCGGCA
* * *
16001396 ACCTAGGCCCTTGGAT-GTGCGGAAGCCTCGGACACCATCGGCAACGTAGGCCCCTGGTCGTGTG
65 ACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTG-G
* *
16001460 AGAGCCTCGGCATCAT-CGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCAA
128 AGAGCCTCGGCACCATCCG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAA
*
16001524 CCTAGGCCCCTGGTCGTGCGG
192 CCTAGGCCCCTGGTCGTACGG
* * * * *
16001545 GAGCGTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCAGCAA
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTACGGGAGCCTCGGACACCATCGGCAA
* * *
16001610 CCTAGGCCCCTGGTCGTGCGGGAGCGTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGAAGA
66 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGGAGA
* * * *
16001675 GCCCCGGACACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGC
131 GCCTCGG-CACCATCCGCAACCTAGGCCCTTGGTCGTGCGGGAGC
16001720 NNNNNNNNNN
Statistics
Matches: 339, Mismatches: 38, Indels: 20
0.85 0.10 0.05
Matches are distributed among these distances:
212 61 0.18
213 265 0.78
214 13 0.04
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (212 bp):
GAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTACGGGAGCCTCGGACACCATCGGCAA
CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGGAGA
GCCTCGGCACCATCCGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTA
GGCCCCTGGTCGTACGG
Found at i:16001878 original size:43 final size:43
Alignment explanation
Indices: 16001817--16002205 Score: 382
Period size: 43 Copynumber: 9.1 Consensus size: 43
16001807 NNNNNNNNNN
* *
16001817 CTAGGCCCGTGGTCGTGCGGGAGCCTCGGGTACCATCGGCAAC
1 CTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* *
16001860 CTAGGCCCCTGGTCGTGCGGGATCCTCGGGCACCATCGTC-AC
1 CTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
16001902 CTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
1 CTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* * * *
16001945 CTAGGCCTCTCGTCGTGCGGGAGCGTTGGGCACCATCGGC-AC
1 CTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* * * *
16001987 CTTTATG--CTTGGAT-GTACGGGAGCCTCGGACACCATCGGCAAC
1 C--TAGGCCCCTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* * *
16002030 CTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGTAAC
1 CTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* *
16002073 CTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGC-AC
1 CTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* * * * * * *
16002115 CTTACTGCCTC-GGAT-GTGTGAGAGCCTCGAGCAGCATTGGC-AC
1 C-TA-GGCCCCTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* ** * * * *
16002158 CTTGGTGCTTGGTTGTGCGGGAGCCTCGGACACCATAGGCAAC
1 CTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
16002201 CTAGG
1 CTAGG
16002206 ACGTTGGATG
Statistics
Matches: 286, Mismatches: 46, Indels: 28
0.79 0.13 0.08
Matches are distributed among these distances:
41 5 0.02
42 94 0.33
43 180 0.63
44 7 0.02
ACGTcount: A:0.15, C:0.32, G:0.33, T:0.19
Consensus pattern (43 bp):
CTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
Found at i:16001960 original size:85 final size:84
Alignment explanation
Indices: 16001817--16002205 Score: 394
Period size: 85 Copynumber: 4.6 Consensus size: 84
16001807 NNNNNNNNNN
* *
16001817 CTAGGCCCGTGGTCGTGCGGGAGCCTCGGGTACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTGGTCGTGCGGGA
*
16001882 TCCTCGGGCACCATCGTCAC
65 GCCTCGGGCACCATCGTCAC
* *
16001902 CTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCTCTCGTCGTGCGGGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC-CTGGTCGTGCGGGA
* * *
16001967 GCGTTGGGCACCATCGGCAC
65 GCCTCGGGCACCATCGTCAC
* * * *
16001987 CTTTATG--CTTGGAT-GTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCATGCG
1 C--TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC-TGGTCGTGCG
*
16002049 GGAGCCTCGGGCACCATCGGTAAC
62 GGAGCCTCGGGCACCATC-GTCAC
* * *
16002073 CTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGC-ACCTTACTG-CCTCGGAT-GTGTG
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC-TA-GGCCCT-GG-TCGTGCG
* * * * *
16002135 AGAGCCTCGAGCAGCATTGGCAC
62 GGAGCCTCGGGCACCATCGTCAC
* ** * * *
16002158 CTTGGTGCTTGGTTGTGCGGGAGCCTCGGACACCATAGGCAACCTAGG
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG
16002206 ACGTTGGATG
Statistics
Matches: 252, Mismatches: 38, Indels: 29
0.79 0.12 0.09
Matches are distributed among these distances:
84 7 0.03
85 181 0.72
86 59 0.23
87 5 0.02
ACGTcount: A:0.15, C:0.32, G:0.33, T:0.19
Consensus pattern (84 bp):
CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTGGTCGTGCGGGAG
CCTCGGGCACCATCGTCAC
Found at i:16002049 original size:128 final size:128
Alignment explanation
Indices: 16001817--16002205 Score: 405
Period size: 128 Copynumber: 3.0 Consensus size: 128
16001807 NNNNNNNNNN
* * * * * * *
16001817 CTAGGCCCGTGGTCGTGCGGGAGCCTCGGGTACCATCGGCAACC-TA-GGCCCCTGG-TCGTGCG
1 CTAGGCCCTTCGTCATGCGGGAGCCTCGGGCACCATCGGC-ACCTTACTGCCTC-GGAT-GTACG
* * * *
16001879 GGATCCTCGGGCACCATCGTCACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
63 GGAGCCTCGGACACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
16001944 C
128 C
* * * *
16001945 CTAGG-CCTCTCGTCGTGCGGGAGCGTTGGGCACCATCGGCACCTTTA-TG-CTTGGATGTACGG
1 CTAGGCCCT-TCGTCATGCGGGAGCCTCGGGCACCATCGGCACC-TTACTGCCTCGGATGTACGG
* *
16002007 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGTAA
64 GAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
16002072 C
128 C
* ** *
16002073 CTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTTACTGCCTCGGATGTGTGAGA
1 CTAGGCCCTTCGTCATGCGGGAGCCTCGGGCACCATCGGCACCTTACTGCCTCGGATGTACGGGA
* * * ** * * *
16002138 GCCTC-GAGCAGCATTGGCACCTTGGTGCTTGGTTGTGCGGGAGCCTCGGACACCATAGGCAAC
66 GCCTCGGA-CACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
16002201 CTAGG
1 CTAGG
16002206 ACGTTGGATG
Statistics
Matches: 219, Mismatches: 33, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
127 32 0.15
128 157 0.72
129 30 0.14
ACGTcount: A:0.15, C:0.32, G:0.33, T:0.19
Consensus pattern (128 bp):
CTAGGCCCTTCGTCATGCGGGAGCCTCGGGCACCATCGGCACCTTACTGCCTCGGATGTACGGGA
GCCTCGGACACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
Found at i:16002258 original size:26 final size:26
Alignment explanation
Indices: 16002222--16002280 Score: 109
Period size: 26 Copynumber: 2.3 Consensus size: 26
16002212 GATGTGCGGA
16002222 TGCCTCGAGCAGCAAGGGCACCCTGG
1 TGCCTCGAGCAGCAAGGGCACCCTGG
*
16002248 TGCCTCGAGCAGCAGGGGCACCCTGG
1 TGCCTCGAGCAGCAAGGGCACCCTGG
16002274 TGCCTCG
1 TGCCTCG
16002281 GATGTGTGGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.15, C:0.36, G:0.36, T:0.14
Consensus pattern (26 bp):
TGCCTCGAGCAGCAAGGGCACCCTGG
Found at i:16005309 original size:166 final size:166
Alignment explanation
Indices: 16005035--16005368 Score: 650
Period size: 166 Copynumber: 2.0 Consensus size: 166
16005025 ACCGAGAAAA
16005035 GTCCAGCTTGAGAATCGGGCGCCATCGGCGTTCGAATTGTAGTCTGGAGAAGCGTTCTCAGCGAC
1 GTCCAGCTTGAGAATCGGGCGCCATCGGCGTTCGAATTGTAGTCTGGAGAAGCGTTCTCAGCGAC
*
16005100 GGACTGGGCCCAAGTCCCCTGGAAAGGGGCGCCGGAGAGGGTGAGAGCCCCGTCGTGCCCGGACC
66 GGACTGGGCCCAAGTCCCCTGGAAAGGGGCGCCGGAGAGGGTGAGAGCCCCGCCGTGCCCGGACC
*
16005165 CTGTCGCACCACGAGGCGCTGTCTACGAGTCGGGTT
131 CTGTCGCACCACGAGACGCTGTCTACGAGTCGGGTT
16005201 GTCCAGCTTGAGAATCGGGCGCCATCGGCGTTCGAATTGTAGTCTGGAGAAGCGTTCTCAGCGAC
1 GTCCAGCTTGAGAATCGGGCGCCATCGGCGTTCGAATTGTAGTCTGGAGAAGCGTTCTCAGCGAC
16005266 GGACTGGGCCCAAGTCCCCTGGAAAGGGGCGCCGGAGAGGGTGAGAGCCCCGCCGTGCCCGGACC
66 GGACTGGGCCCAAGTCCCCTGGAAAGGGGCGCCGGAGAGGGTGAGAGCCCCGCCGTGCCCGGACC
16005331 CTGTCGCACCACGAGACGCTGTCTACGAGTCGGGTT
131 CTGTCGCACCACGAGACGCTGTCTACGAGTCGGGTT
16005367 GT
1 GT
16005369 TTGGGAATGC
Statistics
Matches: 166, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
166 166 1.00
ACGTcount: A:0.18, C:0.29, G:0.36, T:0.17
Consensus pattern (166 bp):
GTCCAGCTTGAGAATCGGGCGCCATCGGCGTTCGAATTGTAGTCTGGAGAAGCGTTCTCAGCGAC
GGACTGGGCCCAAGTCCCCTGGAAAGGGGCGCCGGAGAGGGTGAGAGCCCCGCCGTGCCCGGACC
CTGTCGCACCACGAGACGCTGTCTACGAGTCGGGTT
Found at i:16011782 original size:220 final size:218
Alignment explanation
Indices: 16011400--16011836 Score: 811
Period size: 220 Copynumber: 2.0 Consensus size: 218
16011390 TTCCGATCTC
16011400 CCCTTGTTCTTTTTGCACGTCCCGACCTTGGGGTCCCCAAGTGGGGGACTTAGTGTAAAGAGTTA
1 CCCTTGTTCTTTTTGCACGTCCCGACCTTGGGGTCCCCAAGTGGGGGACTTAGTGTAAAGAGTTA
16011465 GTTAAACACTTGGCCTTGCCGCCCCCTCGGGGAATATGGCACAACGGGGGCCGTGGTGATGCGAG
66 GTTAAACACTTGGCCTTGCCGCCCCCTCGGGGAATATGGCACAACGGGGGCCGTGGTGATGCGAG
* * * *
16011530 TGCGAGCTCCCAACTGTTGGTGGTCCGGGCACTTGTTCAATTTTCTGCCGTGCCGTGCCGTGCCA
131 TGCGAGCTCCCAACTGTTGGTGGTCCGGGCACTTGTTCAATTTTCTACCATGCCAT--CATGCCA
16011595 TATTTCATTCGGCCTCTTGTATTTA
194 TATTTCATTCGGCCTCTTGTATTTA
16011620 CCCTTGTTCTTTTTGCACGTCCCGACCTTGGGGTCCCCAAGTGGGGGACTTAGTGTAAAGAGTTA
1 CCCTTGTTCTTTTTGCACGTCCCGACCTTGGGGTCCCCAAGTGGGGGACTTAGTGTAAAGAGTTA
16011685 GTTAAACACTTGGCCTTGCCGCCCCCTCGGGGAATATGGCACAACGGGGGCCGTGGTGATGCGAG
66 GTTAAACACTTGGCCTTGCCGCCCCCTCGGGGAATATGGCACAACGGGGGCCGTGGTGATGCGAG
16011750 TGCGAGCTCCCAACTGTTGGTGGTCCGGGCACTTGTTCAATTTTCTACCATGCCATCATGCCATA
131 TGCGAGCTCCCAACTGTTGGTGGTCCGGGCACTTGTTCAATTTTCTACCATGCCATCATGCCATA
*
16011815 TTTCATTCGGCTTCTTGTATTT
196 TTTCATTCGGCCTCTTGTATTT
16011837 CTTTTGGGCC
Statistics
Matches: 212, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
218 29 0.14
220 183 0.86
ACGTcount: A:0.16, C:0.27, G:0.28, T:0.30
Consensus pattern (218 bp):
CCCTTGTTCTTTTTGCACGTCCCGACCTTGGGGTCCCCAAGTGGGGGACTTAGTGTAAAGAGTTA
GTTAAACACTTGGCCTTGCCGCCCCCTCGGGGAATATGGCACAACGGGGGCCGTGGTGATGCGAG
TGCGAGCTCCCAACTGTTGGTGGTCCGGGCACTTGTTCAATTTTCTACCATGCCATCATGCCATA
TTTCATTCGGCCTCTTGTATTTA
Found at i:16021537 original size:24 final size:24
Alignment explanation
Indices: 16021491--16021537 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
16021481 ACCGGTTAGG
*
16021491 TTCCCGGCGGTGCTCTGGCGAGCT
1 TTCCCGGCGGTGCTCCGGCGAGCT
*
16021515 TTCCCGGCGGTGCTCCGGTGAGC
1 TTCCCGGCGGTGCTCCGGCGAGC
16021538 CATCCCGGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.04, C:0.34, G:0.38, T:0.23
Consensus pattern (24 bp):
TTCCCGGCGGTGCTCCGGCGAGCT
Found at i:16021543 original size:24 final size:24
Alignment explanation
Indices: 16021492--16021545 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
16021482 CCGGTTAGGT
* **
16021492 TCCCGGCGGTGCTCTGGCGAGCTT
1 TCCCGGCGGTGCTCCGGCGAGCCA
*
16021516 TCCCGGCGGTGCTCCGGTGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
16021540 TCCCGG
1 TCCCGG
16021546 AATATAGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.06, C:0.37, G:0.37, T:0.20
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:16021980 original size:43 final size:43
Alignment explanation
Indices: 16021919--16022612 Score: 897
Period size: 43 Copynumber: 16.3 Consensus size: 43
16021909 GAGAGTCTCA
* * * *
16021919 GCACCATTGGTAACCTAGGACCTTGGTCGTACGGGAGCCTCGG
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
16021962 GCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGG
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * *
16022005 GCACCATTGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-G
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * *
16022047 GCACCATCCGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCAG
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
16022090 ACACCCA-CGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGG
1 GCA-CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * *
16022133 ACACCATCGGC-ACCTTGGCCCCTTGGAT-GTGCGGAAG-CTCGG
1 GCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGG
* * * * * *
16022175 ACACTACCGGTAACCTAGGCACTTGGTCGTGCGGGAGTCTC-G
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
16022217 GCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-G
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
16022259 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAAGCCTCGG
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
16022302 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCGTCGG
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * *
16022345 GCACCATCGGCAACCTAGGCCCCTGGTCGTGCAGGATCCTCGG
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
16022388 GCACCATCGGC-ACCTAGG-CCTCTGGTCTTACGGGAGCCTCGG
1 GCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGG
16022430 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
** ** *
16022473 GCACCATCGGC-ACCTTCGTGCTTGGAT-GTACGGGAGCCTCGG
1 GCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
*
16022515 ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * *
16022558 GCACCATCGGTAACCTAGGCCCTTGGTCATGCGAGAGCCTCGG
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
16022601 GCACCATTGGCA
1 GCACCATCGGCA
16022613 CCTTGCTGCC
Statistics
Matches: 569, Mismatches: 67, Indels: 30
0.85 0.10 0.05
Matches are distributed among these distances:
41 3 0.01
42 215 0.38
43 344 0.60
44 7 0.01
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.18
Consensus pattern (43 bp):
GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
Found at i:16022086 original size:85 final size:86
Alignment explanation
Indices: 16021919--16022612 Score: 897
Period size: 85 Copynumber: 8.1 Consensus size: 86
16021909 GAGAGTCTCA
* * * *
16021919 GCACCATTGGTAACCTAGGACCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC
*
16021984 TTGGTCGTACGGGAGCCTCGG
66 TTGGTCGTGCGGGAGCCTCGG
* * * *
16022005 GCACCATTGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCCGCAACCTAGGCCC
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC
* *
16022069 TTGGTCGTGTGGGAGCCTCAG
66 TTGGTCGTGCGGGAGCCTCGG
* * * *
16022090 ACACCCA-CGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCATCGGC-ACCTTGGCC
1 GCA-CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-C
*
16022153 CCTTGGAT-GTGCGGAAG-CTCGG
64 CCTTGG-TCGTGCGGGAGCCTCGG
* * * * * *
16022175 ACACTACCGGTAACCTAGGCACTTGGTCGTGCGGGAGTCTC-GGCACCATCGGCAACCTAGGCCC
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC
* *
16022239 CTGGTCGTGCGAGAGCCTC-G
66 TTGGTCGTGCGGGAGCCTCGG
*
16022259 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAAGCCTCGGGCACCATCGGCAACCTAGGCCC
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC
*
16022324 TTGGTCGTGCGGGAGCGTCGG
66 TTGGTCGTGCGGGAGCCTCGG
* * *
16022345 GCACCATCGGCAACCTAGGCCCCTGGTCGTGCAGGATCCTCGGGCACCATCGGC-ACCTAGG-CC
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC
* *
16022408 TCTGGTCTTACGGGAGCCTCGG
66 T-TGGTCGTGCGGGAGCCTCGG
** **
16022430 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTCGTGC
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC
*
16022494 TTGGAT-GTACGGGAGCCTCGG
66 TTGG-TCGTGCGGGAGCCTCGG
* *
16022515 ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCC
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC
* *
16022580 TTGGTCATGCGAGAGCCTCGG
66 TTGGTCGTGCGGGAGCCTCGG
*
16022601 GCACCATTGGCA
1 GCACCATCGGCA
16022613 CCTTGCTGCC
Statistics
Matches: 530, Mismatches: 63, Indels: 30
0.85 0.10 0.05
Matches are distributed among these distances:
83 1 0.00
84 64 0.12
85 313 0.59
86 151 0.28
87 1 0.00
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.18
Consensus pattern (86 bp):
GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC
TTGGTCGTGCGGGAGCCTCGG
Found at i:16022101 original size:128 final size:127
Alignment explanation
Indices: 16021919--16022612 Score: 866
Period size: 128 Copynumber: 5.4 Consensus size: 127
16021909 GAGAGTCTCA
* * * *
16021919 GCACCATTGGTAACCTAGGACCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC
*
16021984 TTGGTCGTACGGGAGCCTCGGGCACCATTGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-G
66 TTGGTCGTACGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCG-GAGCCTCGG
* * * *
16022047 GCACCATCCGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCAGACACCCA-CGGCAACCTAGGCC
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA-CCATCGGCAACCTAGGCC
* * *
16022111 CTTGGTCGTACGGGAGCCTCGGACACCATCGGCACCTTGGCCCCTTGGAT-GTGCGGAAG-CTCG
65 CTTGGTCGTACGGGAGCCTCGGGCACCATCGGAACCTAGG-CCCTTGG-TCGTGCGG-AGCCTCG
16022174 G
127 G
* * * * * *
16022175 ACACTACCGGTAACCTAGGCACTTGGTCGTGCGGGAGTCTC-GGCACCATCGGCAACCTAGGCCC
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC
* * *
16022239 CTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAAGCCTCGG
66 TTGGTCGTACGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGG-AGCCTCGG
*
16022302 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCGTCGGGCACCATCGGCAACCTAGGCCC
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC
* * * * * * *
16022367 CTGGTCGTGCAGGATCCTCGGGCACCATCGGCACCTAGG-CCTCTGGTCTTACGGGAGCCTCGG
66 TTGGTCGTACGGGAGCCTCGGGCACCATCGGAACCTAGGCCCT-TGGTCGTGC-GGAGCCTCGG
** **
16022430 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTCGTGC
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC
*
16022494 TTGGAT-GTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
66 TTGG-TCGTACGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGC-GGAGCCTCGG
* * * *
16022558 GCACCATCGGTAACCTAGGCCCTTGGTCATGCGAGAGCCTCGGGCACCATTGGCA
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
16022613 CCTTGCTGCC
Statistics
Matches: 492, Mismatches: 57, Indels: 33
0.85 0.10 0.06
Matches are distributed among these distances:
125 1 0.00
126 29 0.06
127 122 0.25
128 320 0.65
129 20 0.04
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.18
Consensus pattern (127 bp):
GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC
TTGGTCGTACGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGAGCCTCGG
Found at i:16022639 original size:43 final size:42
Alignment explanation
Indices: 16021939--16022782 Score: 412
Period size: 43 Copynumber: 19.8 Consensus size: 42
16021929 TAACCTAGGA
*
16021939 CCTTGG-TCGTACGGGAGCCTCGGGCACCATCGGCAACCTAG-G
1 CCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGC-ACCTTGTG
* * *
16021981 CCCTTGG-TCGTACGGGAGCCTCGGGCACCATTGGTAACCTAG-G
1 -CCTTGGAT-GTACGGGAGCCTCGGGCACCATCGG-CACCTTGTG
* * * *
16022024 CCCTTGG-TCGTGCGAGAGCCTC-GGCACCATCCGCAACCTAG-G
1 -CCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGC-ACCTTGTG
** * * *
16022066 CCCTTGG-TCGTGTGGGAGCCTCAGACACCCA-CGGCAACCTAG-G
1 -CCTTGGAT-GTACGGGAGCCTCGGGCA-CCATCGGC-ACCTTGTG
*
16022109 CCCTTGG-TCGTACGGGAGCCTCGGACACCATCGGCACCTTG-G
1 -CCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGCACCTTGTG
* * * * * * *
16022151 CCCCTTGGATGTGCGGAAG-CTCGGACACTACCGGTAACCTAG-G
1 --CCTTGGATGTACGGGAGCCTCGGGCACCATCGG-CACCTTGTG
* * *
16022194 CACTTGG-TCGTGCGGGAGTCTC-GGCACCATCGGCAACCTAG-G
1 C-CTTGGAT-GTACGGGAGCCTCGGGCACCATCGGC-ACCTTGTG
* * * *
16022236 CCCCTGG-TCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAG-G
1 -CCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGC-ACCTTGTG
* * *
16022278 CCCTTGG-TCGTGCGGAAGCCTCGGGCACCATCGGCAACCTAG-G
1 -CCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGC-ACCTTGTG
* * *
16022321 CCCTTGG-TCGTGCGGGAGCGTCGGGCACCATCGGCAACCTAG-G
1 -CCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGC-ACCTTGTG
* * * * *
16022364 CCCCTGG-TCGTGCAGGATCCTCGGGCACCATCGGCACCTAG-G
1 -CCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGCACCTTGTG
* *
16022406 CCTCTGG-TCTTACGGGAGCCTCGGGCACCATCGGCAACCTAG-G
1 CCT-TGGAT-GTACGGGAGCCTCGGGCACCATCGGC-ACCTTGTG
*
16022449 CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTTCGTG
1 -CCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGCACCTT-GTG
* *
16022493 -CTTGGATGTACGGGAGCCTCGGACACCATCGGCAACCTAG-G
1 CCTTGGATGTACGGGAGCCTCGGGCACCATCGGC-ACCTTGTG
* * *
16022534 CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAG-G
1 -CCTTGGAT-GTACGGGAGCCTCGGGCACCATCGG-CACCTTGTG
* *
16022577 CCCTTGGTCATG--CGAGAGCCTCGGGCACCATTGGCACCTTGCTG
1 -CCTTGG--ATGTACGGGAGCCTCGGGCACCATCGGCACCTTG-TG
* * ** *
16022621 CCTCGGATGTACGGGAGCCTCGAGCAGTATTGGCACCTTGGTG
1 CCTTGGATGTACGGGAGCCTCGGGCACCATCGGCACCTT-GTG
* * *
16022664 -CTTGGATGTGCGGGAGCCTCGGACACCATTGGCACCTTGCTG
1 CCTTGGATGTACGGGAGCCTCGGGCACCATCGGCACCTTG-TG
* * ** *
16022706 CCTCGGATGTACGGGAGCCTCGAGCAGTATTGGCACCTTGGTG
1 CCTTGGATGTACGGGAGCCTCGGGCACCATCGGCACCTT-GTG
* * *
16022749 -CTTGGATGTGCGGGAGCCTCGGACACCATAGGCA
1 CCTTGGATGTACGGGAGCCTCGGGCACCATCGGCA
16022783 ACCTAGGACG
Statistics
Matches: 685, Mismatches: 80, Indels: 73
0.82 0.10 0.09
Matches are distributed among these distances:
41 9 0.01
42 277 0.40
43 386 0.56
44 11 0.02
45 1 0.00
46 1 0.00
ACGTcount: A:0.16, C:0.33, G:0.32, T:0.19
Consensus pattern (42 bp):
CCTTGGATGTACGGGAGCCTCGGGCACCATCGGCACCTTGTG
Found at i:16022668 original size:128 final size:126
Alignment explanation
Indices: 16021919--16022697 Score: 844
Period size: 128 Copynumber: 6.1 Consensus size: 126
16021909 GAGAGTCTCA
* * * *
16021919 GCACCATTGGTAACCTAGGACCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CC
* * * *
16021984 TTGGTCGTACGGGAGCCTCGGGCACCATTGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-G
65 TCGGTCGTACGGGAGCCTC-GGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * * *
16022047 GCACCATCCGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCAGACACCCA-CGGCAACCTAGGCC
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA-CCATCGGCAACCTAGG-C
* * *
16022111 CTTGGTCGTACGGGAGCCTCGGACACCATCGGCACCTTGGCCCCTTGGAT-GTGCGGAAG-CTCG
64 CTCGGTCGTACGGGAGCCTCGG-CACCATCGGCACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCG
16022174 G
126 G
* * * * * * *
16022175 ACACTACCGGTAACCTAGGCACTTGGTCGTGCGGGAGTCTC-GGCACCATCGGCAACCTAGGCCC
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCT
* * *
16022239 CTGGTCGTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAAGCCTCGG
66 C-GGTCGTACGGGAGCCTCGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
16022302 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCGTCGGGCACCATCGGCAACCTAGGCCC
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCT
* * * * *
16022367 CTGGTCGTGCAGGATCCTCGGGCACCATCGGCACCTAGG-CCTCTGGTCTTACGGGAGCCTCGG
66 C-GGTCGTACGGGAGCCTC-GGCACCATCGGCACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGG
*
16022430 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTCGTG-
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC-TAG-GC
*
16022493 CTTGGAT-GTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
64 CTCGG-TCGTACGGGAGCCTCGG-CACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
16022557 G
126 G
* * * * *
16022558 GCACCATCGGTAACCTAGGCCCTTGGTCATGCGAGAGCCTCGGGCACCATTGGC-ACCTTGCTGC
1 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAG--GC
** * * **
16022622 CTCGGAT-GTACGGGAGCCTCGAGCAGTATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCG
64 CTCGG-TCGTACGGGAGCCTCG-GCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
16022685 G
126 G
* *
16022686 ACACCATTGGCA
1 GCACCATCGGCA
16022698 CCTTGCTGCC
Statistics
Matches: 564, Mismatches: 64, Indels: 46
0.84 0.09 0.07
Matches are distributed among these distances:
125 1 0.00
126 33 0.06
127 118 0.21
128 363 0.64
129 48 0.09
130 1 0.00
ACGTcount: A:0.16, C:0.33, G:0.32, T:0.18
Consensus pattern (126 bp):
GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCT
CGGTCGTACGGGAGCCTCGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
Found at i:16022724 original size:128 final size:127
Alignment explanation
Indices: 16021920--16022789 Score: 618
Period size: 128 Copynumber: 6.8 Consensus size: 127
16021910 AGAGTCTCAG
* * * * * * * *
16021920 CACCATTGGTAACCTAGGACCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGC-CC
1 CACCATCGGTAACCTAGGCCCTCGG-CATGCGGGAGCCTCGGGCACCATTGGC-ACCT-TGCTGC
* * * *
16021984 TTGG-TCGTACGGGAGCCTCGGGCACCATTGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG
63 TTGGAT-GTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
16022048 -
127 A
* * * * * * * * * *
16022048 CACCATCCGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCAGACACCCA-CGGCAACCTAGGC-C
1 CACCATCGGTAACCTAGGCCCTCGG-CATGCGGGAGCCTCGGGCA-CCATTGGC-ACCT-TGCTG
* *
16022111 CTTGG-TCGTACGGGAGCCTCGGACACCATCGGC-ACCTTGGCCCCTTGGAT-GTGCGGAAG-CT
62 CTTGGAT-GTACGGGAGCCTCGGACACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCT
16022172 CGGA
124 CGGA
* * * * * * * * *
16022176 CACTACCGGTAACCTAGGCACTTGGTCGTGCGGGAGTCTC-GGCACCATCGGCAACCTAGGC-CC
1 CACCATCGGTAACCTAGGCCCTCGG-CATGCGGGAGCCTCGGGCACCATTGGC-ACCT-TGCTGC
* * * *
16022239 CTGG-TCGTGCGAGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAAGCCTCGG
63 TTGGAT-GTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
16022302 G
127 A
* * * * * * *
16022303 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCGTCGGGCACCATCGGCAACCTAGGC-CC
1 CACCATCGGTAACCTAGGCCCTCGG-CATGCGGGAGCCTCGGGCACCATTGGC-ACCT-TGCTGC
* * * * * * *
16022367 CTGG-TCGTGCAGGATCCTCGGGCACCATCGGC-ACCTAGG-CCTCTGGTCTTACGGGAGCCTCG
63 TTGGAT-GTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCG
*
16022429 GG
126 GA
* * * *
16022431 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTT-CGTGCT
1 CACCATCGGTAACCTAGGCCCTCGG-CATGCGGGAGCCTCGGGCACCATTGGCACCTTGC-TGCT
*
16022495 TGGATGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
64 TGGATGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
* *
16022559 CACCATCGGTAACCTAGGCCCTTGGTCATGCGAGAGCCTCGGGCACCATTGGCACCTTGCTGCCT
1 CACCATCGGTAACCTAGGCCCTCGG-CATGCGGGAGCCTCGGGCACCATTGGCACCTTGCTG-CT
* ** * * **
16022624 CGGATGTACGGGAGCCTC-GAGCAGTATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGG
64 TGGATGTACGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
16022686 A
127 A
* * * * ** *
16022687 CACCATTGG-CACCT-TGCTGCCTCGG-ATGTACGGGAGCCTCGAGCAGTATTGGCACCTTGGTG
1 CACCATCGGTAACCTAGGC--CCTCGGCATG--CGGGAGCCTCGGGCACCATTGGCACCTTGCTG
* *
16022749 CTTGGATGTGCGGGAGCCTCGGACACCATAGGCAACCTAGG
62 CTTGGATGTACGGGAGCCTCGGACACCATCGGCAACCTAGG
16022790 ACGTTGGATG
Statistics
Matches: 640, Mismatches: 76, Indels: 52
0.83 0.10 0.07
Matches are distributed among these distances:
125 2 0.00
126 34 0.05
127 154 0.24
128 405 0.63
129 45 0.07
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (127 bp):
CACCATCGGTAACCTAGGCCCTCGGCATGCGGGAGCCTCGGGCACCATTGGCACCTTGCTGCTTG
GATGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
Found at i:16022799 original size:85 final size:84
Alignment explanation
Indices: 16021829--16022819 Score: 612
Period size: 85 Copynumber: 11.6 Consensus size: 84
16021819 GCCTCGGACA
* * ** * * *
16021829 CCTCGGACACCATCGGCAAACTAGGCTCTTGGTTGTGCACGAGCCTCG-GTGACCATCAGCACCT
1 CCTCGGACACCATCGGCAACCTAGGC-CTTGGATGTGCGGGAGCCTCGAG-CAGCATCGGCACCT
** *
16021893 TGGTGCAAGGATGTGCGAGAG
64 TGGTGCTTGGATGTGCGGGAG
* * * * * * *
16021914 TCTCAG-CACCATTGGTAACCTAGGACCTTGG-TCGTACGGGAGCCTCGGGCACCATCGGCAACC
1 CCTCGGACACCATCGGCAACCTAGG-CCTTGGAT-GTGCGGGAGCCTCGAGCAGCATCGGC-ACC
* ** *
16021977 TAGGCCCTTGG-TCGTACGGGAG
63 TTGGTGCTTGGAT-GTGCGGGAG
* * * * * *
16021999 CCTCGGGCACCATTGGTAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCG-GCACCATCCGCAACC
1 CCTCGGACACCATCGGCAACCTAGG-CCTTGGAT-GTGCGGGAGCCTCGAGCAGCATCGGC-ACC
* ** *
16022062 TAGGCCCTTGG-TCGTGTGGGAG
63 TTGGTGCTTGGAT-GTGCGGGAG
* * *
16022084 CCTCAGACACCCA-CGGCAACCTAGGCCCTTGG-TCGTACGGGAGCCTCG-GACACCATCGGCAC
1 CCTCGGACA-CCATCGGCAACCTAGG-CCTTGGAT-GTGCGGGAGCCTCGAG-CAGCATCGGCAC
** *
16022146 CTTGGCCCCTTGGATGTGCGGAAG
62 CTTGG-TGCTTGGATGTGCGGGAG
* * * * *
16022170 -CTCGGACACTACCGGTAACCTAGGCACTTGG-TCGTGCGGGAGTCTCG-GCACCATCGGCAACC
1 CCTCGGACACCATCGGCAACCTAGGC-CTTGGAT-GTGCGGGAGCCTCGAGCAGCATCGGC-ACC
* ** * *
16022232 TAGGCCCCTGG-TCGTGCGAGAG
63 TTGGTGCTTGGAT-GTGCGGGAG
* * *
16022254 CCTCGG-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGAAGCCTCGGGCACCATCGGCAACC
1 CCTCGGACACCATCGGCAACCTAGG-CCTTGGAT-GTGCGGGAGCCTCGAGCAGCATCGGC-ACC
* **
16022317 TAGGCCCTTGG-TCGTGCGGGAG
63 TTGGTGCTTGGAT-GTGCGGGAG
* * * * * * *
16022339 CGTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCAGGATCCTCGGGCACCATCGGCACCT
1 CCTCGGACACCATCGGCAACCTAGG-CCTTGGAT-GTGCGGGAGCCTCGAGCAGCATCGGCACCT
* * * *
16022403 AGG-CCTCTGG-TCTTACGGGAG
64 TGGTGCT-TGGAT-GTGCGGGAG
* * *
16022424 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCT
1 CCTCGGACACCATCGGCAACCTAGG-CCTTGGAT-GTGCGGGAGCCTCGAGCAGCATCGGCACCT
* *
16022488 TCGTGCTTGGATGTACGGGAG
64 TGGTGCTTGGATGTGCGGGAG
* * *
16022509 CCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGTAACC
1 CCTCGGACACCATCGGCAACCTAGG-CCTTGGAT-GTGCGGGAGCCTCGAGCAGCATCGG-CACC
* ** * *
16022573 TAGGCCCTTGG-TCATGCGAGAG
63 TTGGTGCTTGGAT-GTGCGGGAG
* * * * * * *
16022595 CCTCGGGCACCATTGGC-ACCTTGCTGCCTCGGATGTACGGGAGCCTCGAGCAGTATTGGCACCT
1 CCTCGGACACCATCGGCAACCTAG--GCCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCT
16022659 TGGTGCTTGGATGTGCGGGAG
64 TGGTGCTTGGATGTGCGGGAG
* * * * * *
16022680 CCTCGGACACCATTGGC-ACCTTGCTGCCTCGGATGTACGGGAGCCTCGAGCAGTATTGGCACCT
1 CCTCGGACACCATCGGCAACCTAG--GCCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCT
16022744 TGGTGCTTGGATGTGCGGGAG
64 TGGTGCTTGGATGTGCGGGAG
* * *
16022765 CCTCGGACACCATAGGCAACCTAGGACGTTGGATGTGC-GGATTCCTCGAGCAGCA
1 CCTCGGACACCATCGGCAACCTAGG-CCTTGGATGTGCGGGA-GCCTCGAGCAGCA
16022820 GGGACACCCT
Statistics
Matches: 778, Mismatches: 98, Indels: 60
0.83 0.10 0.06
Matches are distributed among these distances:
83 2 0.00
84 107 0.14
85 488 0.63
86 178 0.23
87 3 0.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (84 bp):
CCTCGGACACCATCGGCAACCTAGGCCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTG
GTGCTTGGATGTGCGGGAG
Found at i:16025553 original size:173 final size:173
Alignment explanation
Indices: 16025264--16025608 Score: 663
Period size: 173 Copynumber: 2.0 Consensus size: 173
16025254 CGAGTCTATA
16025264 GCCTTGGCCGACAGGCCCGGATAATCTTTGAAATTTCATCGTGATGGGGATAGATCATTGCAATT
1 GCCTTGGCCGACAGGCCCGGATAATCTTTGAAATTTCATCGTGATGGGGATAGATCATTGCAATT
16025329 GTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGC
66 GTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGC
*
16025394 CCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCT
131 CCTTTGGACACACCGCCCGTCGCTCCTACCGATTGAATGGTCT
* *
16025437 GCCTTGGCCGACAGGCCTGGGTAATCTTTGAAATTTCATCGTGATGGGGATAGATCATTGCAATT
1 GCCTTGGCCGACAGGCCCGGATAATCTTTGAAATTTCATCGTGATGGGGATAGATCATTGCAATT
16025502 GTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGC
66 GTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGC
16025567 CCTTTGGACACACCGCCCGTCGCTCCTACCGATTGAATGGTC
131 CCTTTGGACACACCGCCCGTCGCTCCTACCGATTGAATGGTC
16025609 CGGTGAAGTG
Statistics
Matches: 169, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
173 169 1.00
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.28
Consensus pattern (173 bp):
GCCTTGGCCGACAGGCCCGGATAATCTTTGAAATTTCATCGTGATGGGGATAGATCATTGCAATT
GTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGC
CCTTTGGACACACCGCCCGTCGCTCCTACCGATTGAATGGTCT
Found at i:16029014 original size:45 final size:45
Alignment explanation
Indices: 16028950--16029040 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
16028940 TACTTATTCT
*
16028950 GTGAATCGGAGGCGGGGCACGGCCCCTCTTTTTGGACCCAAGGTC
1 GTGAATCGGAGACGGGGCACGGCCCCTCTTTTTGGACCCAAGGTC
16028995 GTGAATCGGAGACGGGGCACGGCCCCTCTTTTTGGACCCAAGGTC
1 GTGAATCGGAGACGGGGCACGGCCCCTCTTTTTGGACCCAAGGTC
16029040 G
1 G
16029041 GCTTCGGCCA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.16, C:0.29, G:0.35, T:0.20
Consensus pattern (45 bp):
GTGAATCGGAGACGGGGCACGGCCCCTCTTTTTGGACCCAAGGTC
Found at i:16032895 original size:43 final size:43
Alignment explanation
Indices: 16032825--16033753 Score: 1060
Period size: 43 Copynumber: 21.8 Consensus size: 43
16032815 GTGCAAGGAT
* * * * *
16032825 GTGCGAGAGCCTC-GGCACTATTGGCAACCTATGACCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
16032867 GTACGGGAGCCTTGGGCACCATCAGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
16032910 GTACGGGAGCATCGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
16032953 GTGCGAGAGCCTC-GGCACCATCCGCAACCTAGGCCCTTTGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** * *
16032995 GTGCGGGAGCCTCGAACACCATCGCCAACCTAGGCCATTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
16033038 GTACGGGAGCCTCGGACACCATCGGC-ACCTTGGCACTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
16033080 GTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
16033123 GTGCGGGAGCGTCAGGCACCATCGGCAACCTAGGCCCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
16033166 GTGCGGAAGCCTCGGACACCGTCGGCAACCTAGGCACTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
16033209 GTGCGGGAGTCTC-GGCACCATCGGTAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
16033251 GTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
16033293 GTGCGGGAGCGTCAGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
16033336 GTGCGGGAGCGTCGGGCACCATCGACAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
16033379 GTGCGGGATCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
16033422 GTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
16033464 GTGCGGGAGCCTCGGGCACCATCAGTAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** **
16033507 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTCGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
16033549 GTACGGGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
16033592 TTGCGGGAGCCTCGAGCACCATCGGTAACTTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
16033635 ATGCGGGAGCCTCGTGCACCATTGGC-ACCT-TGCTGCCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC--CCTTGG-TC
* * * * **
16033678 GTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
16033720 GTGCGGGAGCCTCGGACACCATAGGCAACCTAGG
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG
16033754 ACGTTGGATG
Statistics
Matches: 767, Mismatches: 103, Indels: 33
0.85 0.11 0.04
Matches are distributed among these distances:
41 2 0.00
42 264 0.34
43 498 0.65
44 3 0.00
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:16032980 original size:128 final size:128
Alignment explanation
Indices: 16032825--16033753 Score: 1049
Period size: 128 Copynumber: 7.3 Consensus size: 128
16032815 GTGCAAGGAT
* * * * * * *
16032825 GTGCGAGAGCCTCGGCACTATTGGCAACCTATGACCTTGGTCGTACGGGAGCCTTGGGCACCATC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * *
16032890 AGCAACCTAGGCCCTTGGTCGTACGGGAGCATCGGGCACCATCGGCAACCTAGGCCCTTGGTC
66 GGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
* * * **
16032953 GTGCGAGAGCCTCGGCACCATCCGCAACCTAGGCCCTTTGTCGTGCGGGAGCCTCGAACACCATC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * * *
16033018 GCCAACCTAGGCCATTGGTCGTACGGGAGCCTCGGACACCATCGGC-ACCTTGGCACTTGGAT-
66 GGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TC
* * *
16033080 GTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCGTCAGGCACCAT
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * *
16033145 CGGCAACCTAGGCCCTTGGAT-GTGCGGAAGCCTCGGACACCGTCGGCAACCTAGGCACTTGGTC
65 CGGCAACCTAGGCCCTTGG-TCGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
* * * *
16033209 GTGCGGGAGTCTCGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGCACCATC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * * *
16033273 GGCAACCTAGGCCCCTGGTCGTGCGGGAGCGTCAGG-CACCATCGGCAACCTAGGCCCCTGGTC
66 GGCAACCTAGGCCCTTGGTCGTACGGGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGGTC
* * * *
16033336 GTGCGGGAGCGTCGGGCACCATCGACAACCTAGGCCCCTGGTCGTGCGGGATCCTCGGGCACCAT
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * *
16033401 CGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
65 CGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
* * *
16033464 GTGCGGGAGCCTCGGGCACCATCAGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
** ** *
16033529 CGGC-ACCTTCGTGCTTGGAT-GTACGGGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTC
65 CGGCAACCTAGGCCCTTGG-TCGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
16033592 TTGCGGGAGCCTCGAGCACCATCGGTAACTTAGGCCCTTGGTCATGCGGGAGCCTCGTGCACCAT
1 GTGCGGGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * * * * * **
16033657 TGGC-ACCT-TGCTGCCTCGGAT-GTGCGGGAGCCTC-GAGCAGCATTGGC-ACCTTGGTGCTTG
65 CGGCAACCTAGGC--CCTTGG-TCGTACGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTG
16033717 GAT-
126 G-TC
*
16033720 GTGCGGGAGCCTCGGACACCATAGGCAACCTAGG
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGG
16033754 ACGTTGGATG
Statistics
Matches: 695, Mismatches: 88, Indels: 36
0.85 0.11 0.04
Matches are distributed among these distances:
126 1 0.00
127 131 0.19
128 460 0.66
129 103 0.15
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (128 bp):
GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
GGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
Found at i:16033102 original size:213 final size:211
Alignment explanation
Indices: 16032825--16033753 Score: 1025
Period size: 213 Copynumber: 4.4 Consensus size: 211
16032815 GTGCAAGGAT
* * * * * * * * *
16032825 GTGCGAGAGCCTCGG-CACTATTGGCAACCTATGACCTTGGTCGTACGGGAGCCTTGGGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCAT
* *
16032889 CAGCAACCTAGGCCCTTGGTCGTACGGGAGCATCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
65 CGGCAACCTAGGCCCTTGGTCGTACGGGAGCGTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
* * * *
16032954 TGCGAGAGCCTCGGCACCATCCGCAACCTAGGCCCTTTGTCGTGCGGGAGCCTCGAACACCATCG
130 TGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG-GCACCATCG
* *
16033019 CCAACCTAGGCCATTGGTC
194 GC-ACCTAGGCCCTTGGTC
* * * * *
16033038 GTACGGGAGCCTCGGACACCATCGGCACCTTGGCACTTGGAT-GTACGGGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGACACCAT
* *
16033102 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCGTCAGGCACCATCGGCAACCTAGGCCCTTGGAT-
65 CGGCAACCTAGGCCCTTGGTCGTACGGGAGCGTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
16033166 GTGCGGAAGCCTCGGACACCGTCGGCAACCTAGGCACTTGGTCGTGCGGGAGTCTCGGCACCATC
129 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATC
* *
16033231 GGTAACCTAGGCCCCTGGTC
193 GG-CACCTAGGCCCTTGGTC
* *
16033251 GTGCGAGAGCCTCGG-CACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCGTCAGG-CACCA
1 GTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCCTGGTCGTGCGGGAGCCTC-GGACACCA
* * * *
16033314 TCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCGTCGGGCACCATCGACAACCTAGGCCCCTGGTC
64 TCGGCAACCTAGGCCCTTGGTCGTACGGGAGCGTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
16033379 GTGCGGGATCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCAT
129 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCAT
16033444 CGGCACCTAGGCCCTTGGTC
192 CGGCACCTAGGCCCTTGGTC
* ** *
16033464 GTGCGGGAGCCTCGGGCACCATCAGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGACACCATC-GGCACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCAT
** ** * * *
16033529 CGGC-ACCTTCGTGCTTGGAT-GTACGGGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTC
65 CGGCAACCTAGGCCCTTGG-TCGTACGGGAGCGTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
16033592 TTGCGGGAGCCTCGAGCACCATCGGTAACTTAGGCCCTTGGTCATGCGGGAGCCTCGTGCACCAT
129 GTGCGGGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG-GCACCAT
* * *
16033657 TGGCACCT-TGCTGCCTCGGAT-
192 CGGCACCTAGGC--CCTTGG-TC
* * * ** *
16033678 GTGCGGGAGCCTC-GAGCAGCATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCA
1 GTGCGGGAGCCTCGGA-CACCATCGGCACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGACACCA
*
16033741 TAGGCAACCTAGG
64 TCGGCAACCTAGG
16033754 ACGTTGGATG
Statistics
Matches: 609, Mismatches: 84, Indels: 45
0.83 0.11 0.06
Matches are distributed among these distances:
212 16 0.03
213 455 0.75
214 136 0.22
215 2 0.00
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (211 bp):
GTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATC
GGCAACCTAGGCCCTTGGTCGTACGGGAGCGTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
GCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGC
ACCTAGGCCCTTGGTC
Found at i:16040303 original size:279 final size:279
Alignment explanation
Indices: 16039802--16040359 Score: 1062
Period size: 279 Copynumber: 2.0 Consensus size: 279
16039792 GAAGACCCTG
16039802 TTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACGTAAGAGGTGTAGGATAAGTGGGAGCTCTC
1 TTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACGTAAGAGGTGTAGGATAAGTGGGAGCTCTC
* *
16039867 GGGCGAAATTGAAATACCTCTACTTTTAACGTTATTTTACTTATTCCGTGAATCGGAGGCGGGGC
66 GGGCGAAATTCAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAATCGGAGGCGGGGC
* *
16039932 ACGGCCCCTCTTTTTGGACCCAAGGTCAGCTTCGGCCGGCCGATCCGGGTGGAAGACATTGTCAG
131 ACGGCCCCTCTTTTTGGACCCAAGGTCAGCTTCGGCCGGCCGATCCGGGCGGAAGACATTATCAG
* *
16039997 GTGGGGATTTTGGCTGGGGCTGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCA
196 GTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCA
16040062 ACGAGAACAGAAATCTCGT
261 ACGAGAACAGAAATCTCGT
16040081 TTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACGTAAGAGGTGTAGGATAAGTGGGAGCTCTC
1 TTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACGTAAGAGGTGTAGGATAAGTGGGAGCTCTC
16040146 GGGCGAAATTCAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAATCGGAGGCGGGGC
66 GGGCGAAATTCAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAATCGGAGGCGGGGC
16040211 ACGGCCCCTCTTTTTGGACCCAAGGTCAGCTTCGGCCGGCCGATCCGGGCGGAAGACATTATCAG
131 ACGGCCCCTCTTTTTGGACCCAAGGTCAGCTTCGGCCGGCCGATCCGGGCGGAAGACATTATCAG
16040276 GTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCA
196 GTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCA
16040341 ACGAGAACAGAAATCTCGT
261 ACGAGAACAGAAATCTCGT
16040360 GTGGAACAAA
Statistics
Matches: 273, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
279 273 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (279 bp):
TTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACGTAAGAGGTGTAGGATAAGTGGGAGCTCTC
GGGCGAAATTCAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAATCGGAGGCGGGGC
ACGGCCCCTCTTTTTGGACCCAAGGTCAGCTTCGGCCGGCCGATCCGGGCGGAAGACATTATCAG
GTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCA
ACGAGAACAGAAATCTCGT
Found at i:16042820 original size:42 final size:42
Alignment explanation
Indices: 16042762--16042873 Score: 120
Period size: 42 Copynumber: 2.7 Consensus size: 42
16042752 AAACTAGGCT
* * *
16042762 TTCGGTTGTGCAGGAGCCTCGGTG-ACCATCAGCACCTTGGTG
1 TTCGGATGTGCGGGAGCCTCGG-GCACCACCAGCACCTTGGTG
* *
16042804 TTCGGATGTGCGGGAGCCTTGGGCACCACCGGCACCTTGGTG
1 TTCGGATGTGCGGGAGCCTCGGGCACCACCAGCACCTTGGTG
*** *
16042846 CAAGGATGTGCGAGAGCCTC-GGCACCAC
1 TTCGGATGTGCGGGAGCCTCGGGCACCAC
16042874 TGGCAACCTA
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
41 9 0.15
42 50 0.85
ACGTcount: A:0.16, C:0.29, G:0.35, T:0.21
Consensus pattern (42 bp):
TTCGGATGTGCGGGAGCCTCGGGCACCACCAGCACCTTGGTG
Found at i:16042922 original size:43 final size:42
Alignment explanation
Indices: 16042735--16043645 Score: 814
Period size: 43 Copynumber: 21.4 Consensus size: 42
16042725 GCCTCGGACA
* * * * *
16042735 CCTCGGACACCATCGGCAAACTAGGCTTTCGGTTGTGCAGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCTT-GGTCGTGCGGGAG
* * **
16042778 CCTCGGTG-ACCATCAGC-ACCTTGGTGTTCGGAT-GTGCGGGAG
1 CCTCGG-GCACCATCGGCAACCTAGGCCTT-GG-TCGTGCGGGAG
* * * * ** *
16042820 CCTTGGGCACCACCGGC-ACCTTGGTGCAAGGAT-GTGCGAGAG
1 CCTCGGGCACCATCGGCAACCTAGG-CCTTGG-TCGTGCGGGAG
* * *
16042862 CCTC-GGCACCA-CTGGCAACCTAGGACCTCGGTCATACGGGAG
1 CCTCGGGCACCATC-GGCAACCTAGG-CCTTGGTCGTGCGGGAG
* *
16042904 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAG
1 CCTCGGGCACCATCGGCAACCTAGG-CCTTGGTCGTGCGGGAG
* *
16042947 CCTCGGGCACCATTGGCAACCTAGGACCTTGGTCGTGCGAGAG
1 CCTCGGGCACCATCGGCAACCTAGG-CCTTGGTCGTGCGGGAG
* *
16042990 CCTC-GGTACCATCCGCAACCTAGGCCCTTGGTCGTGCGGG-G
1 CCTCGGGCACCATCGGCAACCTAGG-CCTTGGTCGTGCGGGAG
* * *
16043031 CCTCGGACACCATCGGCAACCTAGGCCATTAGTCGTACGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCC-TTGGTCGTGCGGGAG
** * * *
16043074 CCTCGAACACCATCAGC-ACCTTGGCACTTGGAT-GTACGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGC-CTTGG-TCGTGCGGGAG
* * * *
16043116 CCTCGGACACCATCGGTAACCTAGTTCCTTGGAT-GTGCGGAAG
1 CCTCGGGCACCATCGGCAACCTAG-GCCTTGG-TCGTGCGGGAG
* *
16043159 CCTCGGACACCATCGGCAACCTAGGCAGTTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGC-CTTGGTCGTGCGGGAG
* * * *
16043202 TCTC-GGCACCATCGGCAACCTAGGCCCCTAGTCGTGCGAGAG
1 CCTCGGGCACCATCGGCAACCTAGG-CCTTGGTCGTGCGGGAG
* * * * *
16043244 CCTC-GGCACAATCAGAAACCTAGGCCCCTGGTCGTGCAGGAG
1 CCTCGGGCACCATCGGCAACCTAGG-CCTTGGTCGTGCGGGAG
* *
16043286 CCTCGGGCACCATCAGCAACCTAGGCCCCTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGG-CCTTGGTCGTGCGGGAG
* * * * *
16043329 CGTCGGGCACCATCAGCAACCTAGTCCCCTGGTCGTGCGGGAT
1 CCTCGGGCACCATCGGCAACCTAG-GCCTTGGTCGTGCGGGAG
* * *
16043372 CCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTACGAGAG
1 CCTCGGGCACCATCGGCAACCTAGG-CCTTGGTCGTGCGGGAG
* *
16043415 CCTCGGGCACCATCGG-TACCTAGGCCCCTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGG-CCTTGGTCGTGCGGGAG
* *
16043457 CCTCGGGCACCATCGGC-ACCTTCGTG-CTTGGAT-GTACGGGAG
1 CCTCGGGCACCATCGGCAACC-TAG-GCCTTGG-TCGTGCGGGAG
* *
16043499 CCTCGGACACCATCGGCAACCTAGGCCCTTAGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGG-CCTTGGTCGTGCGGGAG
* * *
16043542 CCTCGAGCACCATCGGTAACCTAGGCCCTTGGTCATGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGG-CCTTGGTCGTGCGGGAG
* *
16043585 CCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCATGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGG-CCTTGGTCGTGCGGGAG
16043628 CCTCGGGCACCATCGGCA
1 CCTCGGGCACCATCGGCA
16043646 CCTTTCTGCT
Statistics
Matches: 740, Mismatches: 98, Indels: 60
0.82 0.11 0.07
Matches are distributed among these distances:
40 1 0.00
41 20 0.03
42 308 0.42
43 408 0.55
44 3 0.00
ACGTcount: A:0.18, C:0.33, G:0.31, T:0.18
Consensus pattern (42 bp):
CCTCGGGCACCATCGGCAACCTAGGCCTTGGTCGTGCGGGAG
Found at i:16043087 original size:170 final size:171
Alignment explanation
Indices: 16042735--16043737 Score: 948
Period size: 170 Copynumber: 5.9 Consensus size: 171
16042725 GCCTCGGACA
* * * * * *
16042735 CCTCGGACACCATCGGCAAACTAGG-CTTTCGGTTGTGCAGGAGCCTCGGTG-ACCATCAGC-AC
1 CCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGG-GCACCATCGGCAAC
* * * * * * ** ** *
16042797 CTTGGT-GTTCGGATGTGCGGGAGCCTTGGGCACCACCGGC-ACCTTGGTGCAAGGAT-GTGCGA
64 CTAGGTCCTT-GGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGG
* * *
16042859 GAGCCTCGGCACCA-CTGGCAACCTAGGACCTCGGTCATACGGGAG
127 GAGCCTCGGCACCATC-GGCAACCTAGGCCCTTGGTCGTACGGGAG
* * *
16042904 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATTGGCAACCT
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT
* * * *
16042969 AGGACCTTGG-TCGTGCGAGAGCCTCGG-TACCATCCGCAACCTAGGCCCTTGGTCGTGCGGG-G
66 AGGTCCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
16043031 CCTCGGACACCATCGGCAACCTAGGCCATTAGTCGTACGGGAG
130 CCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAG
** * * * * * *
16043074 CCTCGAACACCATCAGC-ACCTTGGCACTTGGAT-GTACGGGAGCCTCGGACACCATCGGTAACC
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * **
16043137 TAGTTCCTTGGATGTGCGGAAGCCTCGGACACCATCGGCAACCTAGGCAGTTGGTCGTGCGGGAG
65 TAGGTCCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * * * *
16043202 TCTCGGCACCATCGGCAACCTAGGCCCCTAGTCGTGCGAGAG
130 CCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAG
* * * * * *
16043244 CCTC-GGCACAATCAGAAACCTAGGCCCCTGGTCGTGCAGGAGCCTCGGGCACCATCAGCAACCT
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT
* * * * * * * *
16043308 AGGCCCCTGG-TCGTGCGGGAGCGTCGGGCACCATCAGCAACCTAGTCCCCTGGTCGTGCGGGAT
66 AGGTCCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
16043372 CCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTACGAGAG
130 CCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAG
* *
16043415 CCTCGGGCACCATCGG-TACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCT
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT
** * * *
16043478 TCGTGCTTGGATGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTAGTCGTGCGGGAGC
66 AGGTCCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * *
16043543 CTCGAGCACCATCGGTAACCTAGGCCCTTGGTCATGCGGGAG
131 CTCG-GCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAG
* *
16043585 CCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGC-ACCT
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT
*** * * * * * * **
16043649 TTCTGCTTCGGATGTGCAGGAGCATC-GAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGG
66 AGGTCCTT-GGATGTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGG
* *
16043711 AGCCTCGAACACCATAGGCAACCTAGG
128 AGCCTCG-GCACCATCGGCAACCTAGG
16043738 ACGTTGGATG
Statistics
Matches: 693, Mismatches: 117, Indels: 46
0.81 0.14 0.05
Matches are distributed among these distances:
168 1 0.00
169 132 0.19
170 345 0.50
171 183 0.26
172 32 0.05
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.18
Consensus pattern (171 bp):
CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT
AGGTCCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
CTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAG
Found at i:16043438 original size:213 final size:210
Alignment explanation
Indices: 16042859--16043648 Score: 858
Period size: 213 Copynumber: 3.7 Consensus size: 210
16042849 GGATGTGCGA
* *
16042859 GAGCCTCGG-CACCA-CTGGCAACCTAGG-ACCTCGGTCATACGGGAGCCTCGGGCACCATCGGC
1 GAGCCTCGGACACCATC-AGCAACCTAGGCACCT-GGTCGTACGGGAGCCTCGGGCACCATCGGC
* * * *
16042921 AACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATTGGCAACCTAGGACCTTGGTCGTGCG
64 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * *
16042986 AGAGCCTCGGTACCATCCGCAACCTAGGCCCTTGGTCGTGCGGGGCCTCGGACACCATCGGCAAC
129 AGAGCCTCGGCACCAT-CGGAACCTAGGCCCCTGGTCGTGCGGAGCCTCGG-CACCATC-GAAAC
* *
16043051 CTAGGCCATTAGTCGTACGG
191 CTAGGCCCTTGGTCGTACGG
* * * * *
16043071 GAGCCTCGAACACCATCAGC-ACCTTGGCACTTGGAT-GTACGGGAGCCTCGGACACCATCGGTA
1 GAGCCTCGGACACCATCAGCAACCTAGGCACCTGG-TCGTACGGGAGCCTCGGGCACCATCGGCA
** * * **
16043134 ACCTAGTTCCTTGGAT-GTGCGGAAGCCTCGGACACCATCGGCAACCTAGGCAGTTGGTCGTGCG
65 ACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
16043198 GGAGTCTCGGCACCATCGGCAACCTAGGCCCCTAGTCGTGCGAGAGCCTCGGCACAATCAGAAAC
129 AGAGCCTCGGCACCATCGG-AACCTAGGCCCCTGGTCGTGCG-GAGCCTCGGCACCATC-GAAAC
* * *
16043263 CTAGGCCCCTGGTCGTGCAG
191 CTAGGCCCTTGGTCGTACGG
* * * * *
16043283 GAGCCTCGGGCACCATCAGCAACCTAGGCCCCTGGTCGTGCGGGAGCGTCGGGCACCATCAGCAA
1 GAGCCTCGGACACCATCAGCAACCTAGGCACCTGGTCGTACGGGAGCCTCGGGCACCATCGGCAA
* * * * *
16043348 CCTAGTCCCCTGGTCGTGCGGGATCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTACGAG
66 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAG
* **
16043413 AGCCTCGGGCACCATCGGTACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCT
131 AGCCTC-GGCACCATCGGAACCTAGGCCCCTGGTCGTGC-GGAGCCTC-GGCACCATCGAAACCT
** **
16043478 TCGTGCTTGGAT-GTACGG
193 AGGCCCTTGG-TCGTACGG
* * * * *
16043496 GAGCCTCGGACACCATCGGCAACCTAGGC-CCTTAGTCGTGCGGGAGCCTCGAGCACCATCGGTA
1 GAGCCTCGGACACCATCAGCAACCTAGGCACC-TGGTCGTACGGGAGCCTCGGGCACCATCGGCA
* * * *
16043560 ACCTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCATGCGG
65 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
*
16043625 GAGCCTCGGGCACCATCGGCACCT
130 GAGCCTC-GGCACCATCGGAACCT
16043649 TTCTGCTTCG
Statistics
Matches: 481, Mismatches: 82, Indels: 29
0.81 0.14 0.05
Matches are distributed among these distances:
211 2 0.00
212 172 0.36
213 285 0.59
214 22 0.05
ACGTcount: A:0.18, C:0.34, G:0.31, T:0.17
Consensus pattern (210 bp):
GAGCCTCGGACACCATCAGCAACCTAGGCACCTGGTCGTACGGGAGCCTCGGGCACCATCGGCAA
CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAG
AGCCTCGGCACCATCGGAACCTAGGCCCCTGGTCGTGCGGAGCCTCGGCACCATCGAAACCTAGG
CCCTTGGTCGTACGG
Found at i:16043671 original size:43 final size:42
Alignment explanation
Indices: 16043448--16043730 Score: 150
Period size: 43 Copynumber: 6.6 Consensus size: 42
16043438 GCCCCTGGTC
* *
16043448 GTGCGGGAGCCTCGGGCACCATCGGCACCTT-CGTGCTTGGAT
1 GTGCAGGAGCCTCGAGCACCATCGGCACCTTGC-TGCTTGGAT
* * * * *
16043490 GTACGGGAGCCTCG-GACACCATCGGCAACCTAGGC-CCTTAG-T
1 GTGCAGGAGCCTCGAG-CACCATCGGC-ACCT-TGCTGCTTGGAT
* * * *
16043532 CGTGCGGGAGCCTCGAGCACCATCGGTAACCTAGGC-CCTTGG-T
1 -GTGCAGGAGCCTCGAGCACCATCGG-CACCT-TGCTGCTTGGAT
* * * * * *
16043575 CATGCGGGAGCCTCGGGCACCATCGGTAACCTAGGC-CCTTGG-T
1 -GTGCAGGAGCCTCGAGCACCATCGG-CACCT-TGCTGCTTGGAT
* * * *
16043618 CATGCGGGAGCCTCGGGCACCATCGGCACCTTTCTGCTTCGGAT
1 -GTGCAGGAGCCTCGAGCACCATCGGCACCTTGCTGCTT-GGAT
* * * *
16043662 GTGCAGGAGCATCGAGCAGCATTGGCACCTTGGTGCTTGGAT
1 GTGCAGGAGCCTCGAGCACCATCGGCACCTTGCTGCTTGGAT
* * *
16043704 GTGCGGGAGCCTCGAACACCATAGGCA
1 GTGCAGGAGCCTCGAGCACCATCGGCA
16043731 ACCTAGGACG
Statistics
Matches: 205, Mismatches: 26, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
41 2 0.01
42 57 0.28
43 143 0.70
44 2 0.01
45 1 0.00
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.19
Consensus pattern (42 bp):
GTGCAGGAGCCTCGAGCACCATCGGCACCTTGCTGCTTGGAT
Found at i:16045085 original size:42 final size:42
Alignment explanation
Indices: 16045026--16045109 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
16045016 TTGCTACTCG
16045026 GATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCC
1 GATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCC
*
16045068 GATAACCGTAGTAATTCTAGAGTTAATACGTGCAACAAACCC
1 GATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCC
16045110 CGACTTCTGG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.23
Consensus pattern (42 bp):
GATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCC
Found at i:16051242 original size:181 final size:181
Alignment explanation
Indices: 16050938--16051459 Score: 886
Period size: 181 Copynumber: 2.9 Consensus size: 181
16050928 CACTTGGCCT
* * * **
16050938 TGCCGCCCCCTCAGGG-AATATGGCACAACGGGGGCCGTGGTGGTGCGAATGCGAGCTCCCAACT
1 TGCCGCCCCCTC-GGGAAACATGGCACAACGGGGGCCGCGGTGGTGTGGGTGCGAGCTCCCAACT
*
16051002 GTTGGTGGTCTGGGCACTTGTTCAATTTTCTACCGTGCCGTGCGTGCCATACTTCATTCGGCCTC
65 GTTGGTGGTCCGGGCACTTGTTCAATTTTCTACCGTGCCGTGCGTGCCATACTTCATTCGGCCTC
16051067 TTGTATTTGTTTTGGGCGAACAGAAAAAATTTCTAAGTTAGGCACTTGATCG
130 TTGTATTTGTTTTGGGCGAACAGAAAAAATTTCTAAGTTAGGCACTTGATCG
16051119 TGCCGCCCCCTCGGGAAACATGGCACAACGGGGGCCGCGGTGGTGTGGGTGCGAGCTCCCAACTG
1 TGCCGCCCCCTCGGGAAACATGGCACAACGGGGGCCGCGGTGGTGTGGGTGCGAGCTCCCAACTG
16051184 TTGGTGGTCCGGGCACTTGTTCAATTTTCTACCGTGCCGTGCGTGCCATACTTCATTCGGCCTCT
66 TTGGTGGTCCGGGCACTTGTTCAATTTTCTACCGTGCCGTGCGTGCCATACTTCATTCGGCCTCT
16051249 TGTATTTGTTTTGGGCGAACAGAAAAAATTTCTAAGTTAGGCACTTGATCG
131 TGTATTTGTTTTGGGCGAACAGAAAAAATTTCTAAGTTAGGCACTTGATCG
16051300 TGCCGCCCCCTCGGGAAACATGGCACAACGGGGGCCGCGGTGGTGTGGGTGCGAGCTCCCAACTG
1 TGCCGCCCCCTCGGGAAACATGGCACAACGGGGGCCGCGGTGGTGTGGGTGCGAGCTCCCAACTG
* * * * * *
16051365 TTGGTGGTCCGGGCACTTGTTCAATTTTCTACCATGCCAT-CATGCCATATTTCATTTGGCTTCT
66 TTGGTGGTCCGGGCACTTGTTCAATTTTCTACCGTGCCGTGCGTGCCATACTTCATTCGGCCTCT
* * *
16051429 TGTATTTCTTTTGGGCCAACAGGAAAAATTT
131 TGTATTTGTTTTGGGCGAACAGAAAAAATTT
16051460 TCAATTAAAA
Statistics
Matches: 325, Mismatches: 15, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
180 51 0.16
181 274 0.84
ACGTcount: A:0.18, C:0.25, G:0.28, T:0.29
Consensus pattern (181 bp):
TGCCGCCCCCTCGGGAAACATGGCACAACGGGGGCCGCGGTGGTGTGGGTGCGAGCTCCCAACTG
TTGGTGGTCCGGGCACTTGTTCAATTTTCTACCGTGCCGTGCGTGCCATACTTCATTCGGCCTCT
TGTATTTGTTTTGGGCGAACAGAAAAAATTTCTAAGTTAGGCACTTGATCG
Found at i:16052273 original size:13 final size:13
Alignment explanation
Indices: 16052255--16052294 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
16052245 ACACATGAAT
16052255 GTCGCCTGGTAGC
1 GTCGCCTGGTAGC
*
16052268 GTCGCCTAGTAGC
1 GTCGCCTGGTAGC
*
16052281 GTCGCTTGGTAGC
1 GTCGCCTGGTAGC
16052294 G
1 G
16052295 AGCGTAGCGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.10, C:0.28, G:0.38, T:0.25
Consensus pattern (13 bp):
GTCGCCTGGTAGC
Found at i:16057804 original size:39 final size:39
Alignment explanation
Indices: 16057750--16057825 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
16057740 CATTTGGAAC
16057750 AGCAGGAATAATTTGATATTTCGGGGAGTAGAGGACGGG
1 AGCAGGAATAATTTGATATTTCGGGGAGTAGAGGACGGG
*
16057789 AGCAGGAATAATTTGATATTTCGGGGAGTGGAGGACG
1 AGCAGGAATAATTTGATATTTCGGGGAGTAGAGGACG
16057826 AGGCCAAAGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.30, C:0.08, G:0.38, T:0.24
Consensus pattern (39 bp):
AGCAGGAATAATTTGATATTTCGGGGAGTAGAGGACGGG
Found at i:16059280 original size:128 final size:128
Alignment explanation
Indices: 16059073--16060001 Score: 1065
Period size: 128 Copynumber: 7.3 Consensus size: 128
16059063 GTACAAGGAT
* * ** *
16059073 GTGCGAGAGCCTC-GGCACCATTGGCAACCTAGGATCTTGGTCGTACGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCAT
*
16059137 CGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
65 CGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
* * * * * *
16059201 GTACGGGAGCCTCGGGCACCATCGGTAACCTAGACCCTTAGTCGTACGAGAGCCTCGGCACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATC
* *
16059266 CGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
66 GGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
* * * * * *
16059329 GTACGGGAGCCTCGGACACCATCGGC-ACCTTGGCACTTGGTTGTACGGGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCAT
* * * * *
16059393 CGACAACCTAGGCCCTTGGAT-GTGCGGAAGCCTCGGACACCATTGGCAACCTAGGCACTTGGTC
65 CGGCAACCTAGGCCCTTGG-TCGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
* * *
16059457 GTGCGGGAGTCTC-GGCACCATCGGCAACTTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATC
* * * * * *
16059521 GGCAACCAAGGCCCCTGGTCGTACGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTT
66 GGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
* * * *
16059584 GTGCGGGAGCGTCGGGCACCATCGGCAACCTAAGCCCCTGGTCGTGCGGGATCCTCAGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCAT
* * * ** * *
16059649 CGGCAGCCTAGGCCCCTGGTCGTGCGACAGCCTCGGGCACCATCGGC-ACCTAGGCCCCTGGTC
65 CGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
* *
16059712 GTGCGGGAGCCTCGGGCTCCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCAT
** ** * *
16059777 CGGC-ACCTTCGTGCTTGGAT-TTACTGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
65 CGGCAACCTAGGCCCTTGG-TCGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
* * *
16059840 GTGTGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCATGCGGGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCAT
* * * * * * **
16059905 CGGC-ACCT-TGCTGCCTCGGAT-GTACGGGAGCCTC-GAGCAGCATTGGC-ACATTGGTGCTTG
65 CGGCAACCTAGGC--CCTTGG-TCGTACGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTG
16059965 GAT-
126 G-TC
* *
16059968 GTGCGGGAGCCTCGGACACCATAGGCAACCTAGG
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG
16060002 ACGTTGGATG
Statistics
Matches: 689, Mismatches: 98, Indels: 28
0.85 0.12 0.03
Matches are distributed among these distances:
126 1 0.00
127 135 0.20
128 442 0.64
129 111 0.16
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (128 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATC
GGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
Found at i:16060012 original size:85 final size:86
Alignment explanation
Indices: 16059073--16060001 Score: 1069
Period size: 85 Copynumber: 10.9 Consensus size: 86
16059063 GTACAAGGAT
* * ** * *
16059073 GTGCGAGAGCCTC-GGCACCATTGGCAACCTAGGATCTTGGTCGTACGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCAT
16059137 CGGCAACCTAGGCCCTTGGTC
66 CGGCAACCTAGGCCCTTGGTC
* * *
16059158 GTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCAT
* * *
16059223 CGGTAACCTAGACCCTTAGTC
66 CGGCAACCTAGGCCCTTGGTC
* * *
16059244 GTACGAGAGCCTC-GGCACCATCCGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCAT
16059308 CGGCAACCTAGGCCCTTGGTC
66 CGGCAACCTAGGCCCTTGGTC
* * * * * *
16059329 GTACGGGAGCCTCGGACACCATCGGC-ACCTTGGCACTTGGTTGTACGGGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCAT
*
16059393 CGACAACCTAGGCCCTTGGAT-
66 CGGCAACCTAGGCCCTTGG-TC
* * * * *
16059414 GTGCGGAAGCCTCGGACACCATTGGCAACCTAGGCACTTGGTCGTGCGGGAGTCTCGG-CACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCAT
*
16059478 CGGCAACTTAGGCCCTTGGTC
66 CGGCAACCTAGGCCCTTGGTC
* * * * *
16059499 GTGCGAGAGCCTC-GGCACCATCGGCAACCAAGGCCCCTGGTCGTACGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCAT
* * *
16059563 CGGTAACCTAGGCCCCTGGTT
66 CGGCAACCTAGGCCCTTGGTC
* * * *
16059584 GTGCGGGAGCGTCGGGCACCATCGGCAACCTAAGCCCCTGGTCGTGCGGGATCCTCAGG-CACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGACACCA
* *
16059648 TCGGCAGCCTAGGCCCCTGGTC
65 TCGGCAACCTAGGCCCTTGGTC
** * * *
16059670 GTGCGACAGCCTCGGGCACCATCGGC-ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCTCCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCAT
*
16059734 CGGCAACCTAGGCCCCTGGTC
66 CGGCAACCTAGGCCCTTGGTC
** ** * * *
16059755 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTCGTGCTTGGAT-TTACTGGAGCCTCGGACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCA
16059818 TCGGCAACCTAGGCCCTTGGTC
65 TCGGCAACCTAGGCCCTTGGTC
* * *
16059840 GTGTGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCATGCGGGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCAT
* *
16059905 CGGC-ACCT-TGCTGCCTCGGAT-
66 CGGCAACCTAGGC--CCTTGG-TC
* * * * * * **
16059926 GTACGGGAGCCTCGAGCAGCATTGGC-ACATTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCA
*
16059989 TAGGCAACCTAGG
65 TCGGCAACCTAGG
16060002 ACGTTGGATG
Statistics
Matches: 728, Mismatches: 98, Indels: 34
0.85 0.11 0.04
Matches are distributed among these distances:
84 42 0.06
85 417 0.57
86 265 0.36
87 4 0.01
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (86 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCAT
CGGCAACCTAGGCCCTTGGTC
Found at i:16060024 original size:43 final size:43
Alignment explanation
Indices: 16059073--16060001 Score: 1067
Period size: 43 Copynumber: 21.8 Consensus size: 43
16059063 GTACAAGGAT
* * **
16059073 GTGCGAGAGCCTC-GGCACCATTGGCAACCTAGGATCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
16059115 GTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
16059158 GTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
16059201 GTACGGGAGCCTCGGGCACCATCGGTAACCTAGACCCTTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
16059244 GTACGAGAGCCTC-GGCACCATCCGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
16059286 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
16059329 GTACGGGAGCCTCGGACACCATCGGC-ACCTTGGCACTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
16059371 GTACGGGAGCCTCGGACACCATCGACAACCTAGGCCCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
16059414 GTGCGGAAGCCTCGGACACCATTGGCAACCTAGGCACTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
16059457 GTGCGGGAGTCTC-GGCACCATCGGCAACTTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
16059499 GTGCGAGAGCCTC-GGCACCATCGGCAACCAAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
16059541 GTACGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
16059584 GTGCGGGAGCGTCGGGCACCATCGGCAACCTAAGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
16059627 GTGCGGGATCCTCAGGCACCATCGGCAGCCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** *
16059670 GTGCGACAGCCTCGGGCACCATCGGC-ACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
16059712 GTGCGGGAGCCTCGGGCTCCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** **
16059755 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTCGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
16059797 TTACTGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
16059840 GTGTGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
16059883 ATGCGGGAGCCTCGGACACCATCGGC-ACCT-TGCTGCCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC--CCTTGG-TC
* * * * * * **
16059926 GTACGGGAGCCTCGAGCAGCATTGGC-ACATTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
16059968 GTGCGGGAGCCTCGGACACCATAGGCAACCTAGG
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG
16060002 ACGTTGGATG
Statistics
Matches: 765, Mismatches: 107, Indels: 29
0.85 0.12 0.03
Matches are distributed among these distances:
41 2 0.00
42 260 0.34
43 500 0.65
44 3 0.00
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:16060024 original size:128 final size:128
Alignment explanation
Indices: 16058955--16060001 Score: 822
Period size: 128 Copynumber: 8.2 Consensus size: 128
16058945 AGCCTCGGAC
* * * * * * * ** * *
16058955 CCTCGGACACCATCAGCAAACTAGACTCTTGGTTGTGCAGGAGCCTCGGTGACCATCAGCGCCTT
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTT
* ** * * * * ** ** *
16059020 AGTGCTCGGATGTGGGGGAGCCTTGGGCACCACCGGCACCAT-GGTACAAGGAT-GTGCGAGAG
66 CGTGCTCGGATGTACGGGAGCCTCGGACACCATCGGCAACATAGGCCCTTGG-TCGTGCGGGAG
* ** * *
16059082 CCTC-GGCACCATTGGCAACCTAGGATCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCT
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGC-ACCT
** ** * * * *
16059146 AGGCCCTTGG-TCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAG
65 TCGTGCTCGGAT-GTACGGGAGCCTCGGACACCATCGGCAACATAGGCCCTTGGTCGTGCGGGAG
* * * * * *
16059210 CCTCGGGCACCATCGGTAACCTAGACCCTTAGTCGTACGAGAGCCTCGG-CACCATCCGCAACCT
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGC-ACCT
** ** * * * *
16059274 AGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAG
65 TCGTGCTCGGAT-GTACGGGAGCCTCGGACACCATCGGCAACATAGGCCCTTGGTCGTGCGGGAG
* * * * * *
16059338 CCTCGGACACCATCGGC-ACCTTGGCACTTGGTTGTACGGGAGCCTCGGACACCATCGACAACCT
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGC-ACCT
** ** * * * * * *
16059402 AGGCCCTTGGATGTGCGGAAGCCTCGGACACCATTGGCAACCTAGGCACTTGGTCGTGCGGGAG
65 TCGTGCTCGGATGTACGGGAGCCTCGGACACCATCGGCAACATAGGCCCTTGGTCGTGCGGGAG
* * *
16059466 TCTC-GGCACCATCGGCAACTTAGGCCCTTGGTCGTGCGAGAGCCTCGG-CACCATCGGCAACC-
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGC-ACCT
** * * * * * *
16059528 AAG-GCCCCTGG-TCGTACGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTTGTGCGGG
65 TCGTG-CTC-GGAT-GTACGGGAGCCTCGGACACCATCGGCAACATAGGCCCTTGGTCGTGCGGG
16059591 AG
127 AG
* * * *
16059593 CGTCGGGCACCATCGGCAACCTAAGCCCCTGGTCGTGCGGGATCCTCAGG-CACCATCGGCAGCC
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGACACCATCGGCA-CC
* * * ** * * *
16059657 -TAG-GCCCCTGG-TCGTGCGACAGCCTCGGGCACCATCGGC-ACCTAGGCCCCTGGTCGTGCGG
64 TTCGTG-CTC-GGAT-GTACGGGAGCCTCGGACACCATCGGCAACATAGGCCCTTGGTCGTGCGG
16059718 GAG
126 GAG
* * *
16059721 CCTCGGGCTCCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTT
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTT
* * * * *
16059786 CGTGCTTGGATTTACTGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAG
66 CGTGCTCGGATGTACGGGAGCCTCGGACACCATCGGCAACATAGGCCCTTGGTCGTGCGGGAG
* *
16059849 CCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCATGCGGGAGCCTCGGACACCATCGGCACCTT
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTT
* * * **
16059914 -GCTGCCTCGGATGTACGGGAGCCTC-GAGCAGCATTGGC-ACATTGGTGCTTGGAT-GTGCGGG
66 CG-TG-CTCGGATGTACGGGAGCCTCGGA-CACCATCGGCAACATAGGCCCTTGG-TCGTGCGGG
16059975 AG
127 AG
* *
16059977 CCTCGGACACCATAGGCAACCTAGG
1 CCTCGGGCACCATCGGCAACCTAGG
16060002 ACGTTGGATG
Statistics
Matches: 776, Mismatches: 121, Indels: 45
0.82 0.13 0.05
Matches are distributed among these distances:
126 48 0.06
127 162 0.21
128 453 0.58
129 113 0.15
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.18
Consensus pattern (128 bp):
CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTT
CGTGCTCGGATGTACGGGAGCCTCGGACACCATCGGCAACATAGGCCCTTGGTCGTGCGGGAG
Found at i:16060029 original size:85 final size:85
Alignment explanation
Indices: 16058955--16060028 Score: 769
Period size: 85 Copynumber: 12.6 Consensus size: 85
16058945 AGCCTCGGAC
* * * * * * * * *
16058955 CCTCGGACACCATCAGCAAACTAGACTCTTGGTTGTGCAGGAGCCTCG-GTGACCATCAGCGCCT
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-CACCATCGGCACCT
* * *
16059019 TAGTGCTCGGATGTGGGGGAG
65 TGGTGCTTGGATGTGCGGGAG
* * * ** ** * *
16059040 CCTTGGGCACCACCGGC-ACC-ATGGTACAAGGAT-GTGCGAGAGCCTCG-GCACCATTGGCAAC
1 CCTCGGACACCATCGGCAACCTA-GGCCCTTGG-TCGTGCGGGAGCCTCGAGCACCATCGGC-AC
* *
16059101 CTAGGAT-CTTGG-TCGTACGGGAG
63 CTTGG-TGCTTGGAT-GTGCGGGAG
* * *
16059124 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCT
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCT
* ** *
16059189 AGGCCCTTGG-TCGTACGGGAG
65 TGGTGCTTGGAT-GTGCGGGAG
* * * * * * *
16059210 CCTCGGGCACCATCGGTAACCTAGACCCTTAGTCGTACGAGAGCCTCG-GCACCATCCGCAACCT
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCT
* **
16059274 AGGCCCTTGG-TCGTGCGGGAG
65 TGGTGCTTGGAT-GTGCGGGAG
*
16059295 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCG-GACACCATCGGCACCT
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-CACCATCGGCACCT
** * *
16059359 TGGCACTTGGTTGTACGGGAG
65 TGGTGCTTGGATGTGCGGGAG
* * *
16059380 CCTCGGACACCATCGACAACCTAGGCCCTTGGAT-GTGCGGAAGCCTCG-GACACCATTGGCAAC
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGAG-CACCATCGGC-AC
* **
16059443 CTAGGCACTTGG-TCGTGCGGGAG
63 CTTGGTGCTTGGAT-GTGCGGGAG
* * * *
16059466 TCTCGG-CACCATCGGCAACTTAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGCAACCA
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCT
* ** * *
16059529 AGGCCCCTGG-TCGTACGGGAG
65 TGGTGCTTGGAT-GTGCGGGAG
* * * * * *
16059550 CCTCGGGCACCATCGGTAACCTAGGCCCCTGGTTGTGCGGGAGCGTCGGGCACCATCGGCAACCT
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCT
** ** * *
16059615 AAGCCCCTGG-TCGTGCGGGAT
65 TGGTGCTTGGAT-GTGCGGGAG
* * ** *
16059636 CCTCAGG-CACCATCGGCAGCCTAGGCCCCTGGTCGTGCGACAGCCTCGGGCACCATCGGCACCT
1 CCTC-GGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCT
* ** *
16059700 AGGCCCCTGG-TCGTGCGGGAG
65 TGGTGCTTGGAT-GTGCGGGAG
* * * *
16059721 CCTCGGGCTCCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTT
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTT
* * * *
16059786 CGTGCTTGGATTTACTGGAG
66 GGTGCTTGGATGTGCGGGAG
* * *
16059806 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGTAACCT
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGG-CACCT
* ** *
16059871 AGGCCCTTGG-TCATGCGGGAG
65 TGGTGCTTGGAT-GTGCGGGAG
* * * * *
16059892 CCTCGGACACCATCGGC-ACCT-TGCTGCCTCGGAT-GTACGGGAGCCTCGAGCAGCATTGGCAC
1 CCTCGGACACCATCGGCAACCTAGGC--CCTTGG-TCGTGCGGGAGCCTCGAGCACCATCGGCAC
*
16059954 ATTGGTGCTTGGATGTGCGGGAG
63 CTTGGTGCTTGGATGTGCGGGAG
* * *
16059977 CCTCGGACACCATAGGCAACCTAGGACGTTGGAT-GTGC-GGATGCCTCGAGCA
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA-GCCTCGAGCA
16060029 GTAGGGGCAC
Statistics
Matches: 835, Mismatches: 124, Indels: 60
0.82 0.12 0.06
Matches are distributed among these distances:
83 9 0.01
84 94 0.11
85 464 0.56
86 264 0.32
87 4 0.00
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.18
Consensus pattern (85 bp):
CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTT
GGTGCTTGGATGTGCGGGAG
Found at i:16060038 original size:85 final size:85
Alignment explanation
Indices: 16059884--16060056 Score: 190
Period size: 85 Copynumber: 2.0 Consensus size: 85
16059874 CCCTTGGTCA
* * **
16059884 TGCGGGAGCCTCGGACACCATCGGCACCTTGCTGCCTCGGATGTACGGGAGCCTCGAGCAGCATT
1 TGCGGGAGCCTCGGACACCATAGGCACCTAGC-GCCTCGGATGTACGGGAGCCTCGAGCAGCAGG
* *
16059949 GGCACATTGGTG-CTTGGATG
65 GGCACACTGGTGCCTCGGATG
* * * *
16059969 TGCGGGAGCCTCGGACACCATAGGCAACCTAG-GACGTTGGATGTGC-GGATGCCTCGAGCAGTA
1 TGCGGGAGCCTCGGACACCATAGGC-ACCTAGCG-CCTCGGATGTACGGGA-GCCTCGAGCAGCA
*
16060032 GGGGCACCCTGGTGCCTCGGATG
63 GGGGCACACTGGTGCCTCGGATG
16060055 TG
1 TG
16060057 TGGGCTAAAG
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
84 4 0.05
85 55 0.75
86 14 0.19
ACGTcount: A:0.17, C:0.27, G:0.36, T:0.20
Consensus pattern (85 bp):
TGCGGGAGCCTCGGACACCATAGGCACCTAGCGCCTCGGATGTACGGGAGCCTCGAGCAGCAGGG
GCACACTGGTGCCTCGGATG
Found at i:16060309 original size:30 final size:30
Alignment explanation
Indices: 16060275--16060335 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
16060265 TAGTGGCCGG
*
16060275 GGTGATGATTTTTCGGCCGGTCAAGCCCGT
1 GGTGATGATTTTCCGGCCGGTCAAGCCCGT
16060305 GGTGATGATTTTCCGGCCGGTCAAGCCCGT
1 GGTGATGATTTTCCGGCCGGTCAAGCCCGT
16060335 G
1 G
16060336 CCCATAGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.13, C:0.25, G:0.34, T:0.28
Consensus pattern (30 bp):
GGTGATGATTTTCCGGCCGGTCAAGCCCGT
Found at i:16063601 original size:247 final size:247
Alignment explanation
Indices: 16063165--16063658 Score: 970
Period size: 247 Copynumber: 2.0 Consensus size: 247
16063155 CTCAAAGCAG
16063165 GCCTACGCTTGTATACATTAGCATGGGATAACATCATAGGATTTCGATCCTATTGTGTTGGCCTT
1 GCCTACGCTTGTATACATTAGCATGGGATAACATCATAGGATTTCGATCCTATTGTGTTGGCCTT
*
16063230 CGGAATCGGAGTAATGATTAACAGGGATAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAA
66 CGGAATCGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAA
16063295 TTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTCCATTAATCAAG
131 TTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTCCATTAATCAAG
16063360 AACGAAAGTTGAGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCAT
196 AACGAAAGTTGAGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCAT
16063412 GCCTACGCTTGTATACATTAGCATGGGATAACATCATAGGATTTCGATCCTATTGTGTTGGCCTT
1 GCCTACGCTTGTATACATTAGCATGGGATAACATCATAGGATTTCGATCCTATTGTGTTGGCCTT
*
16063477 CGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAA
66 CGGAATCGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAA
16063542 TTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTCCATTAATCAAG
131 TTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTCCATTAATCAAG
16063607 AACGAAAGTTGAGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCAT
196 AACGAAAGTTGAGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCAT
16063659 AAACGATGCC
Statistics
Matches: 245, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
247 245 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (247 bp):
GCCTACGCTTGTATACATTAGCATGGGATAACATCATAGGATTTCGATCCTATTGTGTTGGCCTT
CGGAATCGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAA
TTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTCCATTAATCAAG
AACGAAAGTTGAGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCAT
Found at i:16066556 original size:39 final size:39
Alignment explanation
Indices: 16066502--16066578 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
16066492 CCCGATGAGT
16066502 AGGAGGGCGCGGCGGTCGCCGCAAAACAC-GGGGCGCGAG
1 AGGAGGGCGCGGCGGTCGCCGCAAAAC-CTGGGGCGCGAG
*
16066541 AGGAGGGCGCTGCGGTCGCCGCAAAACCTGGGGCGCGA
1 AGGAGGGCGCGGCGGTCGCCGCAAAACCTGGGGCGCGA
16066579 CCCCGGGCGG
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
38 1 0.03
39 35 0.97
ACGTcount: A:0.19, C:0.29, G:0.47, T:0.05
Consensus pattern (39 bp):
AGGAGGGCGCGGCGGTCGCCGCAAAACCTGGGGCGCGAG
Found at i:16069750 original size:24 final size:24
Alignment explanation
Indices: 16069718--16069805 Score: 106
Period size: 24 Copynumber: 3.7 Consensus size: 24
16069708 GCCGGTTAGG
* * *
16069718 TTCCCGGCGGTGATCCGGCGATAT
1 TTCCTGGCGGTGCTCCGGCGAGAT
16069742 ATT-CTGGCGGTGCTCCGGCGAGAT
1 -TTCCTGGCGGTGCTCCGGCGAGAT
* *
16069766 TTCCTGGCGGTGCTCCGGTGAGCT
1 TTCCTGGCGGTGCTCCGGCGAGAT
*
16069790 TTCCCGGCGGTGCTCC
1 TTCCTGGCGGTGCTCC
16069806 AGTGAGCCAT
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 2 0.04
24 52 0.93
25 2 0.04
ACGTcount: A:0.08, C:0.31, G:0.35, T:0.26
Consensus pattern (24 bp):
TTCCTGGCGGTGCTCCGGCGAGAT
Found at i:16069810 original size:24 final size:24
Alignment explanation
Indices: 16069747--16069812 Score: 96
Period size: 24 Copynumber: 2.8 Consensus size: 24
16069737 GATATATTCT
* * *
16069747 GGCGGTGCTCCGGCGAGATTTCCT
1 GGCGGTGCTCCGGTGAGCTTTCCC
16069771 GGCGGTGCTCCGGTGAGCTTTCCC
1 GGCGGTGCTCCGGTGAGCTTTCCC
*
16069795 GGCGGTGCTCCAGTGAGC
1 GGCGGTGCTCCGGTGAGC
16069813 CATCCCGGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.08, C:0.30, G:0.39, T:0.23
Consensus pattern (24 bp):
GGCGGTGCTCCGGTGAGCTTTCCC
Found at i:16069818 original size:24 final size:24
Alignment explanation
Indices: 16069771--16069820 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
16069761 GAGATTTCCT
* **
16069771 GGCGGTGCTCCGGTGAGCTTTCCC
1 GGCGGTGCTCCAGTGAGCCATCCC
16069795 GGCGGTGCTCCAGTGAGCCATCCC
1 GGCGGTGCTCCAGTGAGCCATCCC
16069819 GG
1 GG
16069821 AATATAGAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.08, C:0.34, G:0.38, T:0.20
Consensus pattern (24 bp):
GGCGGTGCTCCAGTGAGCCATCCC
Found at i:16070308 original size:43 final size:43
Alignment explanation
Indices: 16070118--16070506 Score: 335
Period size: 43 Copynumber: 9.1 Consensus size: 43
16070108 GCCTCGGACA
* * * * *
16070118 CCTCGGACACCATCGGCAAACTAGGCTCTTGGTTGTGCAGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * * ** * *
16070161 CCTCGGTG-ACCATCAG-TACCTTGGTGCTCGGAT-GTGCGGGAA
1 CCTCGG-GCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
* * * ** ** *
16070203 CCTTGGGCACCACCGGC-ACCTTGGTGCAAGG-CTGTGCGAGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC-GTGCGGGAG
* * *
16070245 CCTC-GGCACCATTGGCAACCTAGGACCTTGGTCGTACGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * * *
16070287 CCTCGGGCACCATCGGGAACCTAGGCCCCTGGTTGTGCGGAAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * *
16070330 CCTCGGGCACCATCGGCAACCTAAGCCCCTGGTCGTGCGGGAT
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
** ** *
16070373 CCTCGGGCACCATCGGC-ACCTTCGTGCTTGGAT-GTACGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
*
16070415 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
** *
16070458 CCTCGGGCACCATCGATAACCTAGGCCCTTGGTCATGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
16070501 CCTCGG
1 CCTCGG
16070507 ATGTGCGGGA
Statistics
Matches: 278, Mismatches: 56, Indels: 24
0.78 0.16 0.07
Matches are distributed among these distances:
41 11 0.04
42 102 0.37
43 165 0.59
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (43 bp):
CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
Found at i:16070334 original size:85 final size:85
Alignment explanation
Indices: 16070235--16070506 Score: 323
Period size: 85 Copynumber: 3.2 Consensus size: 85
16070225 GGTGCAAGGC
* * *
16070235 TGTGC-GAGAGCCTCGGCACCATTGGCAACCTAGGACCTTGGTCGTACGGGAGCCTCGGGCACCA
1 TGTGCGGA-AGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
*
16070299 TCGGGAACCTAGGCCCCTGGT
65 TCGGGAACCTAGGCCCTTGGT
* * *
16070320 TGTGCGGAAGCCTCGGGCACCATCGGCAACCTAAGCCCCTGGTCGTGCGGGATCCTCGGGCACCA
1 TGTGCGGAAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* ** ** *
16070385 TC-GGCACCTTCGTGCTTGGA
65 TCGGGAACCTAGGCCCTTGGT
* *
16070405 TGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
1 TGTGCGGAAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
**
16070470 TCGATAACCTAGGCCCTTGGT
65 TCGGGAACCTAGGCCCTTGGT
** *
16070491 CATGCGGGAGCCTCGG
1 TGTGCGGAAGCCTCGG
16070507 ATGTGCGGGA
Statistics
Matches: 154, Mismatches: 29, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
84 2 0.01
85 81 0.53
86 71 0.46
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.18
Consensus pattern (85 bp):
TGTGCGGAAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
CGGGAACCTAGGCCCTTGGT
Found at i:16071794 original size:227 final size:227
Alignment explanation
Indices: 16071399--16071819 Score: 824
Period size: 227 Copynumber: 1.9 Consensus size: 227
16071389 CTCCCCTTGT
16071399 TCTAATTGAACCCAAGGGGTGCGATCGGGATCCTGTGTTGCGTACCTAAGCCAAATGGAATTATG
1 TCTAATTGAACCCAAGGGGTGCGATCGGGATCCTGTGTTGCGTACCTAAGCCAAATGGAATTATG
16071464 GATGTGTTGCCGTCCCTTCTCCATCTCGTGCCCTTTGGGGTGCGTGGTGGACCACAATCGTGCCC
66 GATGTGTTGCCGTCCCTTCTCCATCTCGTGCCCTTTGGGGTGCGTGGTGGACCACAATCGTGCCC
16071529 TGTGTCCCGAGTGTGTCCTCTTAAATCGGTGTGGCCTCGTCGGTGCATTGGTGCTCATTCGTACA
131 TGTGTCCCGAGTGTGTCCTCTTAAATCGGTGTGGCCTCGTCGGTGCATTGGTGCTCATTCGTACA
16071594 CTGGGGGGTGTAAGTTGAGTTTGTAGGCTCGG
196 CTGGGGGGTGTAAGTTGAGTTTGTAGGCTCGG
*
16071626 TCTAATTGAACCCAAGGGGTGCGATCGGGATCCTGTGTTGTGTACCTAAGCCAAATGGAATTATG
1 TCTAATTGAACCCAAGGGGTGCGATCGGGATCCTGTGTTGCGTACCTAAGCCAAATGGAATTATG
*
16071691 GATGTGTTGTCGTCCCTTCTCCATCTCGTGCCCTTTGGGGTGCGTGGTGGACCACAATCGTGCCC
66 GATGTGTTGCCGTCCCTTCTCCATCTCGTGCCCTTTGGGGTGCGTGGTGGACCACAATCGTGCCC
16071756 TGTGTCCCGAGTGTGTCCTCTTAAATCGGTGTGGCCTCGTCGGTGCATTGGTGCTCATTCGTAC
131 TGTGTCCCGAGTGTGTCCTCTTAAATCGGTGTGGCCTCGTCGGTGCATTGGTGCTCATTCGTAC
16071820 TTTCGGATGC
Statistics
Matches: 192, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
227 192 1.00
ACGTcount: A:0.15, C:0.24, G:0.30, T:0.30
Consensus pattern (227 bp):
TCTAATTGAACCCAAGGGGTGCGATCGGGATCCTGTGTTGCGTACCTAAGCCAAATGGAATTATG
GATGTGTTGCCGTCCCTTCTCCATCTCGTGCCCTTTGGGGTGCGTGGTGGACCACAATCGTGCCC
TGTGTCCCGAGTGTGTCCTCTTAAATCGGTGTGGCCTCGTCGGTGCATTGGTGCTCATTCGTACA
CTGGGGGGTGTAAGTTGAGTTTGTAGGCTCGG
Found at i:16076814 original size:42 final size:42
Alignment explanation
Indices: 16076755--16076838 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
16076745 CCCACTGTCC
*
16076755 CTGTCTACTATCTAGCGAAACCACAGCCAAGGGAACGGGCTT
1 CTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTT
16076797 CTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTT
1 CTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTT
16076839 GGCAGAATCA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.29, C:0.30, G:0.24, T:0.18
Consensus pattern (42 bp):
CTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTT
Found at i:16079344 original size:42 final size:42
Alignment explanation
Indices: 16079292--16079397 Score: 128
Period size: 42 Copynumber: 2.5 Consensus size: 42
16079282 GGCTCTTGGT
* *
16079292 TGTGCAGGAGCCTCGGTG-ACCATCAGCACCTTGGTGCT-CGGA
1 TGTGCGGGAGCCTCGG-GCACCATCAGCACCTTGGTG-TAAGGA
* *
16079334 TGTGCGGGAGCCTTGGGCACCATCGGCACCTTGGTGTAAGGA
1 TGTGCGGGAGCCTCGGGCACCATCAGCACCTTGGTGTAAGGA
*
16079376 TGTGCGAGAGCCTC-GGCACCAT
1 TGTGCGGGAGCCTCGGGCACCAT
16079398 TGGCAACCTA
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
41 10 0.18
42 46 0.82
ACGTcount: A:0.17, C:0.27, G:0.35, T:0.21
Consensus pattern (42 bp):
TGTGCGGGAGCCTCGGGCACCATCAGCACCTTGGTGTAAGGA
Found at i:16079446 original size:43 final size:43
Alignment explanation
Indices: 16079270--16080171 Score: 999
Period size: 43 Copynumber: 21.2 Consensus size: 43
16079260 CTCGAACACT
* * * * *
16079270 ATCGGAAAACTAGGCTCTTGGTTGTGCAGGAGCCTCGGTG-ACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-GCACC
* * ** * *
16079313 ATCAGC-ACCTTGGTGCTCGGAT-GTGCGGGAGCCTTGGGCACC
1 ATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACC
* ** * *
16079355 ATCGGC-ACCTTGG-TGTAAGGAT-GTGCGAGAGCCTC-GGCACC
1 ATCGGCAACCTAGGCCCT-TGG-TCGTGCGGGAGCCTCGGGCACC
* * *
16079396 ATTGGCAACCTAGGACCTTGGTCGTACGGGAGCCTCGGGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
*
16079439 ATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* *
16079482 ATTGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* *
16079524 ATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* * * *
16079567 ATCGGC-ACCTTGGCGCTTGGGT-GTACGGGAGCCTCGGACACC
1 ATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACC
* * *
16079609 ATTGGCAACCTAGGCCCTTGGAT-GTGCGGAAGCCTCGGACACC
1 ATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACC
* *
16079652 ATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* *
16079694 ATCGACAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* *
16079737 ATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCGTCGGGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
** * *
16079780 ATCGGTGACCTAGGCCCCTGGTCGTGCGGGATCCTCGGGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* *
16079823 ATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCGTCGGGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
** * *
16079866 ATCGGTGACCTAGGCCCCTGGTCGTGCGGGATCCTCGGGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* *
16079909 ATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* * * *
16079952 ATCGAC-ACCTAGGCCCCTGGTCGTTCGGGAGCCTCGGCCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* *
16079994 ATCGGTAACCTAGG-CCTCTGGTCGTGCGGGAGCCTCCGGCACC
1 ATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACC
* ** ** * * *
16080037 ACCGGC-ACCTTCGTGCTTGGAT-GTACGGGAGCCTCGGACACA
1 ATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACC
* *
16080079 ATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* * * *
16080122 ATCGGTAGCCTAGGCCCATGGTCATGCGGGAGCCTCGGGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
16080165 ATCGGCA
1 ATCGGCA
16080172 CCTTGCTGCC
Statistics
Matches: 743, Mismatches: 97, Indels: 38
0.85 0.11 0.04
Matches are distributed among these distances:
41 14 0.02
42 255 0.34
43 474 0.64
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (43 bp):
ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
Found at i:16079532 original size:128 final size:128
Alignment explanation
Indices: 16079335--16080171 Score: 985
Period size: 128 Copynumber: 6.5 Consensus size: 128
16079325 GTGCTCGGAT
* * ** * *
16079335 GTGCGGGAGCCTTGGGCACCATCGGC-ACCTTGG-TGTAAGGAT-GTGCGAGAGCCTCGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGG-TCGTGCGGGAGCCTCGGCACCA
* * * *
16079397 TTGGCAACCTAGGACCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
64 TCGGCAACCTAGGCCCCTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * *
16079462 GTACGGGAGCCTCGGGCACCATTGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATC
* * * * *
16079527 GGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCATCGGC-ACCTTGGCGCTTGGGT-
66 GGCAACCTAGGCCCCTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCT-GGTC
* * * *
16079589 GTACGGGAGCCTCGGACACCATTGGCAACCTAGGCCCTTGGAT-GTGCGGAAGCCTCGGACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG-CACCA
* * *
16079653 TCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGCACCATCGACAACCTAGGCCCCTGGTC
64 TCGGCAACCTAGGCCCCTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* *
16079717 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCGTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCAT
** * *
16079782 CGGTGACCTAGGCCCCTGGTCGTGCGGGATCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
65 CGGCAACCTAGGCCCCTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* ** * *
16079846 GTGCGGGAGCGTCGGGCACCATCGGTGACCTAGGCCCCTGGTCGTGCGGGATCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCAT
* * *
16079911 CGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGAC-ACCTAGGCCCCTGGTC
65 CGGCAACCTAGGCCCCTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * *
16079974 GTTCGGGAGCCTCGGCCACCATCGGTAACCTAGG-CCTCTGGTCGTGCGGGAGCCTCCGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCT-CGGCACCA
* ** ** * * * * *
16080038 CCGGC-ACCTTCGTGCTTGGAT-GTACGGGAGCCTCGGACACAATCGGTAACCTAGGCCCTTGGT
64 TCGGCAACCTAGGCCCCTGG-TCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGT
16080101 C
128 C
* * * * *
16080102 GTGCAGGAGCCTCGGGCACCATCGGTAGCCTAGGCCCATGGTCATGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCAT
16080167 CGGCA
65 CGGCA
16080172 CCTTGCTGCC
Statistics
Matches: 622, Mismatches: 70, Indels: 34
0.86 0.10 0.05
Matches are distributed among these distances:
127 133 0.21
128 353 0.57
129 136 0.22
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (128 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATC
GGCAACCTAGGCCCCTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
Found at i:16079539 original size:85 final size:86
Alignment explanation
Indices: 16079377--16080171 Score: 998
Period size: 85 Copynumber: 9.3 Consensus size: 86
16079367 GTGTAAGGAT
* * * *
16079377 GTGCGAGAGCCTC-GGCACCATTGGCAACCTAGGACCTTGGTCGTACGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
*
16079441 CGGCAACCTAGGCCCTTGGTC
66 CGGCAACCTAGGCCCCTGGTC
* * *
16079462 GTACGGGAGCCTCGGGCACCATTGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
*
16079526 CGGCAACCTAGGCCCTTGGTC
66 CGGCAACCTAGGCCCCTGGTC
* * * * * *
16079547 GTACGGGAGCCTCGGACACCATCGGC-ACCTTGGCGCTTGGGT-GTACGGGAGCCTCGGACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCA
* *
16079610 TTGGCAACCTAGGCCCTTGGAT-
65 TCGGCAACCTAGGCCCCTGG-TC
* * * *
16079632 GTGCGGAAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
*
16079696 CGACAACCTAGGCCCCTGGTC
66 CGGCAACCTAGGCCCCTGGTC
* *
16079717 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCGTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
**
16079782 CGGTGACCTAGGCCCCTGGTC
66 CGGCAACCTAGGCCCCTGGTC
* * *
16079803 GTGCGGGATCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCGTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
**
16079868 CGGTGACCTAGGCCCCTGGTC
66 CGGCAACCTAGGCCCCTGGTC
* * *
16079889 GTGCGGGATCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
*
16079954 CGAC-ACCTAGGCCCCTGGTC
66 CGGCAACCTAGGCCCCTGGTC
* * * *
16079974 GTTCGGGAGCCTCGGCCACCATCGGTAACCTAGG-CCTCTGGTCGTGCGGGAGCCTCCGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCA
* ** ** *
16080038 CCGGC-ACCTTCGTGCTTGGAT-
65 TCGGCAACCTAGGCCCCTGG-TC
* * * * *
16080059 GTACGGGAGCCTCGGACACAATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * *
16080124 CGGTAGCCTAGGCCCATGGTC
66 CGGCAACCTAGGCCCCTGGTC
*
16080145 ATGCGGGAGCCTCGGGCACCATCGGCA
1 GTGCGGGAGCCTCGGGCACCATCGGCA
16080172 CCTTGCTGCC
Statistics
Matches: 629, Mismatches: 68, Indels: 25
0.87 0.09 0.03
Matches are distributed among these distances:
84 24 0.04
85 335 0.53
86 270 0.43
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (86 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
CGGCAACCTAGGCCCCTGGTC
Found at i:16080227 original size:128 final size:128
Alignment explanation
Indices: 16079377--16080263 Score: 956
Period size: 128 Copynumber: 6.9 Consensus size: 128
16079367 GTGTAAGGAT
* * * * * *
16079377 GTGCGAGAGCCTC-GGCACCATTGGCAACCTAGGACCTTGGTCGTACGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGAGCACCAT
* * *
16079441 CGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATTGGCAACCTAGGCCCTTGGTC
66 CGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * *
16079505 GTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCG-GACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGAG-CACCA
* * * * * *
16079568 TCGGCACCTTGGCGCTTGGGT-GTACGGGAGCCTCGGACACCATTGGCAACCTAGGCCCTTGGAT
65 TCGGCACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-T
16079632 -
128 C
* * *
16079632 GTGCGGAAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCG-GCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGAGCACCAT
* *
16079696 CGACAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
66 CGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* ** * *
16079760 GTGCGGGAGCGTCGGGCACCATCGGTGACCTAGGCCCCTGGTCGTGCGGGATCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGAGCACCAT
* * **
16079825 CGGCAACCTAGGCCCCTGGTCGTGCGGGAGCGTCGGGCACCATCGGTGACCTAGGCCCCTGGTC
66 CGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * *
16079889 GTGCGGGATCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGAGCACCAT
* * * * * *
16079954 CGACACCTAGGCCCCTGGTCGTTCGGGAGCCTCGGCCACCATCGGTAACCTAGGCCTCTGGTC
66 CGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * ** ** * * *
16080017 GTGCGGGAGCCTCCGGCACCACCGGC-ACCTTCGTGCTTGGAT-GTACGGGAGCCTCG-GACACA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGAG-CACC
* * * * *
16080079 ATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGTAGCCTAGGCCCATGGT
64 ATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGT
16080144 C
128 C
* * * * *
16080145 ATGCGGGAGCCTCGGGCACCATCGGC-ACCT-TGCTGCCTCGGAT-GTGCGGGAGCCTCGATCAG
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC-CCCT-GG-TCGTGCGGGAGCCTCGAGCAC
* ** ** *
16080207 CATTGGCACC-ATGGTGCTTGGAT-GTGCGGGAGCCTCGGATACCATAGGCAACCTAGG
63 CATCGGCACCTA-GGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG
16080264 ACGTTGGATG
Statistics
Matches: 661, Mismatches: 82, Indels: 32
0.85 0.11 0.04
Matches are distributed among these distances:
126 1 0.00
127 105 0.16
128 402 0.61
129 153 0.23
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (128 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGAGCACCAT
CGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
Found at i:16080243 original size:42 final size:43
Alignment explanation
Indices: 16080146--16080243 Score: 126
Period size: 43 Copynumber: 2.3 Consensus size: 43
16080136 CCCATGGTCA
* *
16080146 TGCGGGAGCCTCGGGCACCATCGGCACCTTGCTGCCTCGGATG
1 TGCGGGAGCCTCGAGCACCATCGGCACCATGCTGCCTCGGATG
* * * * *
16080189 TGCGGGAGCCTCGATCAGCATTGGCACCATGGTG-CTTGGATG
1 TGCGGGAGCCTCGAGCACCATCGGCACCATGCTGCCTCGGATG
16080231 TGCGGGAGCCTCG
1 TGCGGGAGCCTCG
16080244 GATACCATAG
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 20 0.42
43 28 0.58
ACGTcount: A:0.13, C:0.30, G:0.37, T:0.20
Consensus pattern (43 bp):
TGCGGGAGCCTCGAGCACCATCGGCACCATGCTGCCTCGGATG
Found at i:16083317 original size:46 final size:46
Alignment explanation
Indices: 16083264--16083386 Score: 201
Period size: 46 Copynumber: 2.7 Consensus size: 46
16083254 GGCATCTGAG
* **
16083264 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAA
* *
16083310 CTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAA
16083356 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
16083387 GCGGGTTACA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.32
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAA
Found at i:16089024 original size:10 final size:10
Alignment explanation
Indices: 16089009--16089042 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
16088999 TTCAATTTTC
*
16089009 TGCCGTGCCG
1 TGCCGTGCCA
16089019 TGCCGTGCCA
1 TGCCGTGCCA
*
16089029 TGCCATGCCA
1 TGCCGTGCCA
16089039 TGCC
1 TGCC
16089043 ATACTTCTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.09, C:0.41, G:0.29, T:0.21
Consensus pattern (10 bp):
TGCCGTGCCA
Found at i:16089796 original size:58 final size:59
Alignment explanation
Indices: 16089705--16089825 Score: 192
Period size: 58 Copynumber: 2.1 Consensus size: 59
16089695 CCCTCCCCAA
*
16089705 TCCCAAAAGGTAGAATTCAGATACCGTTACATGT-TCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTCT-GGTACCCAACAATGAATGAATCG
* *
16089764 TCCC-AAAGGTAGGATTCAGATACCGTTGCATGTCTGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTCTGGTACCCAACAATGAATGAATCG
16089822 TCCC
1 TCCC
16089826 TGTCCCTCCC
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
58 53 0.91
59 5 0.09
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCAGATACCGTTACATGTCTGGTACCCAACAATGAATGAATCG
Found at i:16090531 original size:42 final size:42
Alignment explanation
Indices: 16090437--16091306 Score: 760
Period size: 43 Copynumber: 20.5 Consensus size: 42
16090427 CACATTGCTA
* * * * * * *
16090437 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTATGAC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * *
16090480 GTTTGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGCCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* **
16090522 CTTGGTCGTGCGGGAGCCTCGGGCACCA-CTGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATC-GGCACCTAGGCC
16090564 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGG-CC
* **
16090608 C-TGGTCGTACGGGAGCCTC-GATACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * *
16090649 CTTGGTCGTGCGGGAGCCTCGGCCACCATCAGCAACCTAGGCA
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * *
16090692 CTTGGTCATACGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * ** * * *
16090734 CCTGGTCATGTAGGAGCTTCGGCCACCATTGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
16090777 CTTGGTCGTGCGAGAGCCTCGGG-ACCATTGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
16090818 CTTGGTCGTACGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
16090860 CTTGGAT-GTGCAGGAGCCTCGGACACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
16090903 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGG-C
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCC
* * *
16090945 CTTGATCGTG-GGAGAACCTCGGGCACCATCGGTAACCTAGG-C
1 CTTGGTCGTGCGG-GAGCCTCGGGCACCATCGG-CACCTAGGCC
* * * * * **
16090987 CTTGATCGTGCGAGAACCTCAGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
** * **
16091029 CTTGGAT-GTGCGGGAGCCTCGAACACCCATCGGCACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCA-CCATCGGCACCTAGGCC
** *
16091072 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* ** *
16091115 CTTGCTCGTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * *
16091158 CTTGCTCGTGCGGGAGCCTCAGGCACCATCGGCACCTTGGTGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CC
* * ** * **
16091201 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTAGCACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * *
16091243 CTTGGAT-GTGCGGGAGGCTCGGACACCATCGGCAACCTAGGAC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
16091286 GTTGGAT-GTGCGGGTGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
16091307 AGCAGCAGGG
Statistics
Matches: 705, Mismatches: 98, Indels: 48
0.83 0.12 0.06
Matches are distributed among these distances:
41 41 0.06
42 319 0.45
43 343 0.49
44 2 0.00
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.19
Consensus pattern (42 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:16091291 original size:85 final size:87
Alignment explanation
Indices: 16090485--16091310 Score: 766
Period size: 85 Copynumber: 9.7 Consensus size: 87
16090475 ATGACGTTTG
* * *
16090485 TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGCCCCTTGG-TCGTGCGGGAGCCTCGGGCAC
1 TCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGATCGTGCGGGAGCCTCGAGCAC
* **
16090548 CA-CTGGCACCTTGGTGCTTGGA
66 CATC-GGCACCTAGGCCCTTGGA
* * *
16090570 T-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCC-TGG-TCGTACGGGAGCCTCGA-TA
1 TCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGG-CCCTTGGATCGTGCGGGAGCCTCGAGCA
16090631 CCATCGGCAACCTAGGCCCTTGG-
65 CCATCGGC-ACCTAGGCCCTTGGA
* * * *
16090654 TCGTGCGGGAGCCTCGGCCACCATCAGCAACCTAGGCACTTGG-TCATACGGGAGCCTCG-GCCA
1 TCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGATCGTGCGGGAGCCTCGAG-CA
*
16090717 CCATCGGCACCTAGGCCCCTGG-
65 CCATCGGCACCTAGGCCCTTGGA
* ** * * * *
16090739 TCATGTAGGAGCTTCGGCCACCATTGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCG-GGAC
1 TCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGATCGTGCGGGAGCCTCGAGCAC
*
16090802 CATTGGCACCTAGGCCCTTGG-
66 CATCGGCACCTAGGCCCTTGGA
* *
16090823 TCGTACGGGAGCCTCGGCCACCATCGGC-ACCTAGGCCCTTGGAT-GTGCAGGAGCCTCG-GACA
1 TCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGATCGTGCGGGAGCCTCGAG-CA
*
16090885 CCATCGGCAACCTAGGCCCCTGG-
65 CCATCGGC-ACCTAGGCCCTTGGA
* * * *
16090908 TCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGG-CCTT-GATCGTG-GGAGAACCTCGGGCA
1 TCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGATCGTGCGG-GAGCCTCGAGCA
*
16090970 CCATCGGTAACCTAGG-CCTT-GA
65 CCATCGG-CACCTAGGCCCTTGGA
* * * ** *
16090992 TCGTGCGAGAACCTCAGG-CACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAACA
1 TCGTGCGGGAGCCTC-GGCCACCATCGGCAACCTAGGCCCTTGGATCGTGCGGGAGCCTCGAGCA
* **
16091054 CCCATCGGCACCTTGGTGCTTGGA
65 -CCATCGGCACCTAGGCCCTTGGA
** * * *
16091078 T-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTT-GCTCGTGCGGGAGCCTCGAACAC
1 TCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGATCGTGCGGGAGCCTCGAGCAC
* *
16091141 CATCGGCAACCTCGGCCCTT-GC
66 CATCGGC-ACCTAGGCCCTTGGA
* *
16091163 TCGTGCGGGAGCCTCAGG-CACCATCGGC-ACCTTGGTGCCTTGGAT-GTGCGGGAGCCTCGAGC
1 TCGTGCGGGAGCCTC-GGCCACCATCGGCAACCTAGG-CCCTTGGATCGTGCGGGAGCCTCGAGC
* ** * **
16091225 AGCATTAGCACCTTGGTGCTTGGA
64 ACCATCGGCACCTAGGCCCTTGGA
* * * * *
16091249 T-GTGCGGGAGGCTCGGACACCATCGGCAACCTAGGACGTTGGAT-GTGCGGGTGCCTCGAGCA
1 TCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGATCGTGCGGGAGCCTCGAGCA
16091311 GCAGGGGCAC
Statistics
Matches: 623, Mismatches: 83, Indels: 70
0.80 0.11 0.09
Matches are distributed among these distances:
83 34 0.05
84 141 0.23
85 329 0.53
86 116 0.19
87 3 0.00
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.19
Consensus pattern (87 bp):
TCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGATCGTGCGGGAGCCTCGAGCAC
CATCGGCACCTAGGCCCTTGGA
Found at i:16091336 original size:43 final size:43
Alignment explanation
Indices: 16091013--16091340 Score: 235
Period size: 43 Copynumber: 7.7 Consensus size: 43
16091003 CCTCAGGCAC
* * *
16091013 CATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAACACC
1 CATCGGCACCCTGGTGGCTTGGATGTGCGGGAGCCTCGAGCA-G
* * *
16091056 CATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAACAC
1 CATCGGCACCCTGGTGGCTTGGATGTGCGGGAGCCTCGAGCAG
* ** * * *
16091098 CATCGGCAACCTCGG-CCCTT-GCTCGTGCGGGAGCCTCGAACAC
1 CATCGGCACCCT-GGTGGCTTGGAT-GTGCGGGAGCCTCGAGCAG
* ** * *
16091141 CATCGGCAACCTCGG-CCCTT-GCTCGTGCGGGAGCCTC-AGGCAC
1 CATCGGCACCCT-GGTGGCTTGGAT-GTGCGGGAGCCTCGA-GCAG
* *
16091184 CATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCCTCGAGCAG
1 CATCGGCACCCTGGTGGCTTGGATGTGCGGGAGCCTCGAGCAG
** * * *
16091227 CATTAGCACCTTGGT-GCTTGGATGTGCGGGAGGCTCG-GACAC
1 CATCGGCACCCTGGTGGCTTGGATGTGCGGGAGCCTCGAG-CAG
* * * *
16091269 CATCGGCAACCTAG-GACGTTGGATGTGCGGGTGCCTCGAGCAG
1 CATCGGCACCCTGGTGGC-TTGGATGTGCGGGAGCCTCGAGCAG
** *
16091312 CAGGGGCACCCTGGTGGCTCGGATGTGCG
1 CATCGGCACCCTGGTGGCTTGGATGTGCG
16091341 AGATAAAGAA
Statistics
Matches: 243, Mismatches: 30, Indels: 24
0.82 0.10 0.08
Matches are distributed among these distances:
41 1 0.00
42 48 0.20
43 188 0.77
44 6 0.02
ACGTcount: A:0.16, C:0.30, G:0.34, T:0.20
Consensus pattern (43 bp):
CATCGGCACCCTGGTGGCTTGGATGTGCGGGAGCCTCGAGCAG
Found at i:16092327 original size:91 final size:91
Alignment explanation
Indices: 16092179--16092353 Score: 296
Period size: 91 Copynumber: 1.9 Consensus size: 91
16092169 AGCCAGATTT
* * *
16092179 AATTATTGATGTGTTCCCGTCCCTTCTCCATCTCGTGCCCTTTGGGGTGCGTGGTGGACCACAAT
1 AATTATGGATGTGTTCCCGTCCCTTCTCCATCCCGTGCCCTTCGGGGTGCGTGGTGGACCACAAT
16092244 CGTGCCCTGTGTCCCGAGTCAGATGG
66 CGTGCCCTGTGTCCCGAGTCAGATGG
* *
16092270 AATTATGGATGTGTTGCCGTCCCTTCTCCATCCCGTGCCCTTCGGGGTGCGTGGTGGACCTCAAT
1 AATTATGGATGTGTTCCCGTCCCTTCTCCATCCCGTGCCCTTCGGGGTGCGTGGTGGACCACAAT
*
16092335 CGTGCCTTGTGTCCCGAGT
66 CGTGCCCTGTGTCCCGAGT
16092354 GCACCCCCTT
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
91 78 1.00
ACGTcount: A:0.12, C:0.29, G:0.28, T:0.31
Consensus pattern (91 bp):
AATTATGGATGTGTTCCCGTCCCTTCTCCATCCCGTGCCCTTCGGGGTGCGTGGTGGACCACAAT
CGTGCCCTGTGTCCCGAGTCAGATGG
Found at i:16096140 original size:41 final size:41
Alignment explanation
Indices: 16096085--16096176 Score: 148
Period size: 41 Copynumber: 2.2 Consensus size: 41
16096075 GTAGGAGGGC
* * *
16096085 GCGGCGGTCACCGCAAAACCCGGGGCGCGAGCCTGGGCGGA
1 GCGGCCGTCGCCGCAAAACCCGGGGCGCGAGCCCGGGCGGA
*
16096126 GCGGCCGTCGCCGCAAAACTCGGGGCGCGAGCCCGGGCGGA
1 GCGGCCGTCGCCGCAAAACCCGGGGCGCGAGCCCGGGCGGA
16096167 GCGGCCGTCG
1 GCGGCCGTCG
16096177 GTGCAGATCT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.14, C:0.36, G:0.45, T:0.05
Consensus pattern (41 bp):
GCGGCCGTCGCCGCAAAACCCGGGGCGCGAGCCCGGGCGGA
Found at i:16099101 original size:58 final size:58
Alignment explanation
Indices: 16099006--16099120 Score: 185
Period size: 58 Copynumber: 2.0 Consensus size: 58
16098996 CCCAATCCCA
* * *
16099006 AAAGGTAGAATTCAGATACTGTTACATGTTCGGTACCCAACAATGAATGAACCGTCCT
1 AAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATAAACCGTCCT
* *
16099064 AAAGCTAGAATTCAGATACCGTTGCATGTTCGGTACCCAACAATGAATAAATCGTCC
1 AAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATAAACCGTCC
16099121 CTGTCCCTCC
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 52 1.00
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (58 bp):
AAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATAAACCGTCCT
Found at i:16108701 original size:43 final size:43
Alignment explanation
Indices: 16108620--16108702 Score: 98
Period size: 43 Copynumber: 1.9 Consensus size: 43
16108610 ATGTCAGTGG
* * *
16108620 TGCAAGAGCCTCGAGCAGCATCGGCACCTTGGTGCCTTGGATA
1 TGCAAGAGCCTCGAGCACCATCGGCACCTAGGTCCCTTGGATA
*
16108663 TGCAGGAGCCTCG-GACACCATCGGCAACCTAGG-CCCTTGG
1 TGCAAGAGCCTCGAG-CACCATCGGC-ACCTAGGTCCCTTGG
16108703 TCGTGCAGGT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
42 1 0.03
43 27 0.79
44 6 0.18
ACGTcount: A:0.20, C:0.31, G:0.30, T:0.18
Consensus pattern (43 bp):
TGCAAGAGCCTCGAGCACCATCGGCACCTAGGTCCCTTGGATA
Found at i:16110103 original size:25 final size:25
Alignment explanation
Indices: 16110075--16110139 Score: 112
Period size: 25 Copynumber: 2.6 Consensus size: 25
16110065 AAGTCAAAAG
16110075 TCACCGTTTCAATTGTTCCCACCAC
1 TCACCGTTTCAATTGTTCCCACCAC
*
16110100 TCACCGTTTCAATTGTTTCCACCAC
1 TCACCGTTTCAATTGTTCCCACCAC
*
16110125 GCACCGTTTCAATTG
1 TCACCGTTTCAATTG
16110140 ATTTCACTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.20, C:0.35, G:0.11, T:0.34
Consensus pattern (25 bp):
TCACCGTTTCAATTGTTCCCACCAC
Found at i:16110592 original size:10 final size:10
Alignment explanation
Indices: 16110577--16110602 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
16110567 GTTGAGGGTT
16110577 TCGTTTTTAG
1 TCGTTTTTAG
16110587 TCGTTTTTAG
1 TCGTTTTTAG
16110597 TCGTTT
1 TCGTTT
16110603 CTGTATGGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.08, C:0.12, G:0.19, T:0.62
Consensus pattern (10 bp):
TCGTTTTTAG
Found at i:16133143 original size:75 final size:77
Alignment explanation
Indices: 16133022--16133184 Score: 215
Period size: 75 Copynumber: 2.2 Consensus size: 77
16133012 TGGCACAACG
* * *
16133022 AGTCCC-TCCCTAATCCCAAACGGTAGAATTTGGATACCGTTACATGTTCAGTACCCAATAATGA
1 AGTCCCTTCCCTAATCCCAAACGGTAGAATTCGGATACCATTACATGTTCAGTACCCAAAAATGA
* *
16133086 ATGAATCGTCCC
66 ATAAATCATCCC
* * *
16133098 AGTCCCTTCCC-AGTCCCAAA-GGTAGAATTCGGATACCATTGCATGTTCGGTACCCAAAAATGA
1 AGTCCCTTCCCTAATCCCAAACGGTAGAATTCGGATACCATTACATGTTCAGTACCCAAAAATGA
16133161 ATAAATCATCCC
66 ATAAATCATCCC
* *
16133173 TGTCCCTCCCCT
1 AGTCCCTTCCCT
16133185 TTTGCAACAA
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
75 57 0.76
76 14 0.19
77 4 0.05
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (77 bp):
AGTCCCTTCCCTAATCCCAAACGGTAGAATTCGGATACCATTACATGTTCAGTACCCAAAAATGA
ATAAATCATCCC
Found at i:16147737 original size:85 final size:85
Alignment explanation
Indices: 16147582--16148017 Score: 370
Period size: 85 Copynumber: 5.1 Consensus size: 85
16147572 CACATTCGAG
* * * * *
16147582 GCACCAAGGTGTCGATGGTGCCCGAGACT-CCAGCATGACCAAGGGCCTAGGTTGCTGAAGGTGT
1 GCACCAAGGTGCCGATGGTGCCCGAGGCTCCCA-CACGACCAAGGGCCTAGGTTGCCGATGGTG-
*
16147646 CC-GAGGCTCTCGTACATCCAA
64 CCTGAGGCTCTCGCACATCCAA
** * ** *
16147667 GCACCAAGGTGCC-AGTGGTGCTTGAAGCTCCCGTACGACCAAGGGCCTAGGTTGTCGATGGTGC
1 GCACCAAGGTGCCGA-TGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCGATGGTGC
*
16147731 CTGAGGCTCCCGCACGA-CCAA
65 CTGAGGCTCTCGCAC-ATCCAA
** * * *
16147752 GGGCCTAGGTTGCCGATGGTGCCCGAGGCT-CTAGCACGTCCAA--GCACTAAGG-TGCCGATGG
1 GCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCA-CACGACCAAGGGC-CT-AGGTTGCCGATGG
* * *
16147813 TGCCCGAGGCTCTTGCATGA-CCAA
62 TGCCTGAGGCTCTCGCA-CATCCAA
** * * * * * * * *
16147837 GGGCCTAGGTTACCGATGGTGCCCGAGGCTCCTACACAACCAAGGGCCTAGGTTTCTGATTGT-A
1 GCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCGATGGTGC
*
16147901 CTGAGGCTCTCGCAAATCCAA
65 CTGAGGCTCTCGCACATCCAA
* * *
16147922 GCACCAAGGTGCCAATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGTTTGCCGATGGTGTC
1 GCACCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
16147987 TGAGGCTCCCGCACATCGAA
66 TGAGGCTCTCGCACATCCAA
16148007 GGCACCAAGGT
1 -GCACCAAGGT
16148018 ACTGATGCTA
Statistics
Matches: 281, Mismatches: 53, Indels: 33
0.77 0.14 0.09
Matches are distributed among these distances:
84 51 0.18
85 177 0.63
86 50 0.18
87 3 0.01
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.19
Consensus pattern (85 bp):
GCACCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCGATGGTGCC
TGAGGCTCTCGCACATCCAA
Found at i:16147740 original size:43 final size:43
Alignment explanation
Indices: 16147594--16148000 Score: 328
Period size: 43 Copynumber: 9.6 Consensus size: 43
16147584 ACCAAGGTGT
* * *
16147594 CGATGGTGCCCGAGACTCCAGCATGACCAAGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * * * ** *
16147637 TGAAGGTGTCCGAGGCTCTCGTAC-ATCCAAGCACCAAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGC
** * * *
16147679 C-AGTGGTGCTTGAAGCTCCCGTACGACCAAGGGCCTAGGTTGT
1 CGA-TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
*
16147722 CGATGGTGCCTGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
** *
16147765 CGATGGTGCCCGAGGCTCTAGCACGTCCAA--GCACTAAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC-CT-AGGTTGC
** * *
16147807 CGATGGTGCCCGAGGCTCTTGCATGACCAAGGGCCTAGGTTAC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
** * *
16147850 CGATGGTGCCCGAGGCTCCTACACAACCAAGGGCCTAGGTTTC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * * * * ** *
16147893 TGATTGT-ACTGAGGCTCTCGCA-AATCCAAGCACCAAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGC
* * *
16147934 CAATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGTTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* *
16147977 CGATGGTGTCTGAGGCTCCCGCAC
1 CGATGGTGCCCGAGGCTCCCGCAC
16148001 ATCGAAGGCA
Statistics
Matches: 284, Mismatches: 66, Indels: 28
0.75 0.17 0.07
Matches are distributed among these distances:
41 11 0.04
42 104 0.37
43 166 0.58
44 3 0.01
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.19
Consensus pattern (43 bp):
CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
Found at i:16147835 original size:128 final size:127
Alignment explanation
Indices: 16147594--16148000 Score: 492
Period size: 128 Copynumber: 3.2 Consensus size: 127
16147584 ACCAAGGTGT
* * * * * *
16147594 CGATGGTGCCCGAGACTCCAGCATGACCAAGGGCCTAGGTTGCTGAAGGTGTCCGAGGCTCTCGT
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGACCGAGGCTCTCGC
** * * *
16147659 ACATCCAAGCACCAAGGTGCCAGTGGTGCTTGAAGCTCCCGTACGACCAAGGGCCTAGGTTGT
66 ACATCCAAGCACCAAGGTGCCA-TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * *
16147722 CGATGGTGCCTGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTAGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGACCGAGGCTCTCGC
* * ** * *
16147787 ACGTCCAAGCACTAAGGTGCCGATGGTGCCCGAGGCTCTTGCATGACCAAGGGCCTAGGTTAC
66 ACATCCAAGCACCAAGGTGCC-ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
** * * * *
16147850 CGATGGTGCCCGAGGCTCCTACACAACCAAGGGCCTAGGTTTCTGATTGT-ACTGAGGCTCTCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGACCGAGGCTCTCGC
* * *
16147914 AAATCCAAGCACCAAGGTGCCAATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGTTTGC
66 ACATCCAAGCACCAAGGTGCC-ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* *
16147977 CGATGGTGTCTGAGGCTCCCGCAC
1 CGATGGTGCCCGAGGCTCCCGCAC
16148001 ATCGAAGGCA
Statistics
Matches: 234, Mismatches: 44, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
127 84 0.36
128 149 0.64
129 1 0.00
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.19
Consensus pattern (127 bp):
CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGACCGAGGCTCTCGC
ACATCCAAGCACCAAGGTGCCATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
Found at i:16148035 original size:43 final size:43
Alignment explanation
Indices: 16147988--16148123 Score: 150
Period size: 43 Copynumber: 3.2 Consensus size: 43
16147978 GATGGTGTCT
* **
16147988 GAGGCTCCCGCACATCGAAGGCACCAAGGTACTGATGCTATTC
1 GAGGCTCCCGCACATCGAAGGCACCAAGGTGCTGATGCTGCTC
* * ** *
16148031 GAGGCTCCCACATATCCG-AGGCACCAAGGTGCCAATACTGCTC
1 GAGGCTCCCGCACAT-CGAAGGCACCAAGGTGCTGATGCTGCTC
* *
16148074 GAGGCTCCTGTACATC-AGAGGCACCAAGGTGCTGATGCTGCTC
1 GAGGCTCCCGCACATCGA-AGGCACCAAGGTGCTGATGCTGCTC
16148117 GAGGCTC
1 GAGGCTC
16148124 TCTCACCACT
Statistics
Matches: 75, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
42 1 0.01
43 72 0.96
44 2 0.03
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (43 bp):
GAGGCTCCCGCACATCGAAGGCACCAAGGTGCTGATGCTGCTC
Found at i:16152167 original size:29 final size:29
Alignment explanation
Indices: 16152128--16152206 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
16152118 CTTAATAATC
*
16152128 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
16152158 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
16152187 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
16152207 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:16173208 original size:42 final size:42
Alignment explanation
Indices: 16173149--16173462 Score: 229
Period size: 42 Copynumber: 7.4 Consensus size: 42
16173139 AAAGACTGAT
* * *
16173149 CGATGGTGACCGAGGCTCCCGCGCATCCAAGTACCAAGGTGC
1 CGATGGTGCCCGAGGCTCCCGCACATCCAAGGACCAAGGTGC
* * * * * * *
16173191 CGATGGTACCCGAGGCTCTCGAACAACCAAGGGCCTAAGTTGT
1 CGATGGTGCCCGAGGCTCCCGCACATCCAAGGACC-AAGGTGC
* * * * *
16173234 CGATGGTGTCCGAGGCTCCCTCA-AGACCAAGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACA-TCCAAGGACCAAGG-TGC
* ** * * *
16173277 CGATGGTG-CGGAGGCTTTCGCAAATGCAAGCACCAAGGTGC
1 CGATGGTGCCCGAGGCTCCCGCACATCCAAGGACCAAGGTGC
* **
16173318 CAATGGTGCCCGAGGCTCCCGCACATCCAATCACCAAGGTGC
1 CGATGGTGCCCGAGGCTCCCGCACATCCAAGGACCAAGGTGC
* * * * * *
16173360 CGGTGGTGCTCGAGGCTCCCGGACGA-CCAAGGGCCTAGTTTGC
1 CGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGACCAAG-GTGC
* * * *
16173403 CGATGGTGTCCAAGGCTCCCGTACATCGAAGGCACCAAGGTGC
1 CGATGGTGCCCGAGGCTCCCGCACATCCAAGG-ACCAAGGTGC
* *
16173446 CGATGTTGCTCGAGGCT
1 CGATGGTGCCCGAGGCT
16173463 TCTACACATC
Statistics
Matches: 207, Mismatches: 56, Indels: 17
0.74 0.20 0.06
Matches are distributed among these distances:
41 10 0.05
42 105 0.51
43 88 0.43
44 4 0.02
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.18
Consensus pattern (42 bp):
CGATGGTGCCCGAGGCTCCCGCACATCCAAGGACCAAGGTGC
Found at i:16173249 original size:43 final size:41
Alignment explanation
Indices: 16173188--16173292 Score: 113
Period size: 43 Copynumber: 2.5 Consensus size: 41
16173178 AGTACCAAGG
*
16173188 TGCCGATGGTACCCGAGGCT-CTCGAACAACCAAGGGCCTAAGT
1 TGCCGATGGT-GCCGAGGCTCCTC-AA-AACCAAGGGCCTAAGT
* * *
16173231 TGTCGATGGTGTCCGAGGCTCCCTCAAGACCAAGGGCCTAGGT
1 TGCCGATGGTG-CCGAGGCT-CCTCAAAACCAAGGGCCTAAGT
*
16173274 TGCCGATGGTGCGGAGGCT
1 TGCCGATGGTGCCGAGGCT
16173293 TTCGCAAATG
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
42 7 0.13
43 41 0.77
44 2 0.04
45 3 0.06
ACGTcount: A:0.20, C:0.28, G:0.33, T:0.19
Consensus pattern (41 bp):
TGCCGATGGTGCCGAGGCTCCTCAAAACCAAGGGCCTAAGT
Found at i:16173264 original size:85 final size:84
Alignment explanation
Indices: 16173149--16173423 Score: 213
Period size: 85 Copynumber: 3.2 Consensus size: 84
16173139 AAAGACTGAT
*
16173149 CGATGGTGACCGAGGCTCCCGC--GCATCCAAGTACCAAGGTGCCGATGGTACCCGAGGCTCTCG
1 CGATGGTGTCCGAGGCTCCCGCAAG-A-CCAAGTACCAAGGTGCCGATGGT-CCCGAGGCTCTCG
*
16173212 AACAACCAAGGGCCTAAGTTGT
63 AACAACCAAGGGCCTAAGTTGC
* ** * * * *
16173234 CGATGGTGTCCGAGGCTCCCTCAAGACCAAGGGCCTAGGTTGCCGATGGTGCGGAGGCTTTCGCA
1 CGATGGTGTCCGAGGCTCCCGCAAGACCAAGTACCAAGG-TGCCGATGGTCCCGAGGCTCTCG-A
** ** *
16173299 A-ATGCAAGCACC-AAGGTGC
64 ACAACCAAGGGCCTAAGTTGC
* * * * * *
16173318 CAATGGTGCCCGAGGCTCCCGCACA-TCCAA-TCACCAAGGTGCCGGTGGTGCTCGAGGCTCCCG
1 CGATGGTGTCCGAGGCTCCCGCA-AGACCAAGT-ACCAAGGTGCCGATGGT-CCCGAGGCTCTCG
* *
16173381 GACGACCAAGGGCCT-AGTTTGC
63 AACAACCAAGGGCCTAAG-TTGC
*
16173403 CGATGGTGTCCAAGGCTCCCG
1 CGATGGTGTCCGAGGCTCCCG
16173424 TACATCGAAG
Statistics
Matches: 143, Mismatches: 37, Indels: 20
0.71 0.19 0.10
Matches are distributed among these distances:
83 10 0.07
84 50 0.35
85 69 0.48
86 13 0.09
87 1 0.01
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.17
Consensus pattern (84 bp):
CGATGGTGTCCGAGGCTCCCGCAAGACCAAGTACCAAGGTGCCGATGGTCCCGAGGCTCTCGAAC
AACCAAGGGCCTAAGTTGC
Found at i:16174695 original size:40 final size:40
Alignment explanation
Indices: 16174640--16174722 Score: 148
Period size: 40 Copynumber: 2.1 Consensus size: 40
16174630 GAGCATGATG
*
16174640 TGTTGTATTGAGATTATGCTTAAGTGAAATTATAGATATA
1 TGTTGTATTGAGATTATGATTAAGTGAAATTATAGATATA
*
16174680 TGTTGTATTGAGATTATGATTAAGTGAAATTATATATATA
1 TGTTGTATTGAGATTATGATTAAGTGAAATTATAGATATA
16174720 TGT
1 TGT
16174723 GATGAAATTG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.35, C:0.01, G:0.19, T:0.45
Consensus pattern (40 bp):
TGTTGTATTGAGATTATGATTAAGTGAAATTATAGATATA
Found at i:16175759 original size:38 final size:38
Alignment explanation
Indices: 16175717--16175809 Score: 134
Period size: 38 Copynumber: 2.4 Consensus size: 38
16175707 ACAGGCTATA
* * *
16175717 TGCTGGAATTATATCTGGG-TTACATCCCGCAGGCTTCG
1 TGCTGGTATTATATCTGGGTTTA-ATCCCGCAGGCCTAG
*
16175755 TGCTGGTATTATATCAGGGTTTAATCCCGCAGGCCTAG
1 TGCTGGTATTATATCTGGGTTTAATCCCGCAGGCCTAG
16175793 TGCTGGTATTATATCTG
1 TGCTGGTATTATATCTG
16175810 AGCTTAAAGT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
38 46 0.94
39 3 0.06
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.34
Consensus pattern (38 bp):
TGCTGGTATTATATCTGGGTTTAATCCCGCAGGCCTAG
Found at i:16176452 original size:16 final size:18
Alignment explanation
Indices: 16176421--16176453 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
16176411 AGTTCATCAC
16176421 ACTATTGATCATTTTGGT
1 ACTATTGATCATTTTGGT
16176439 ACTATT-AT-ATTTTGG
1 ACTATTGATCATTTTGG
16176454 AGTTGATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 2 0.13
18 6 0.40
ACGTcount: A:0.24, C:0.09, G:0.15, T:0.52
Consensus pattern (18 bp):
ACTATTGATCATTTTGGT
Found at i:16176739 original size:43 final size:43
Alignment explanation
Indices: 16176677--16176781 Score: 165
Period size: 43 Copynumber: 2.4 Consensus size: 43
16176667 TACACTGATA
* * *
16176677 CTGCTCGAGGCTCCCGCACATTCGAGGCACCAAGGTGCCGATG
1 CTGCTCGAGGCTCTCGCACATCCGAGGCACCAAGGTGCCAATG
* *
16176720 TTGCTCGAGGCTCTCGCACATCCGAGGCACCAAGGTTCCAATG
1 CTGCTCGAGGCTCTCGCACATCCGAGGCACCAAGGTGCCAATG
16176763 CTGCTCGAGGCTCTCGCAC
1 CTGCTCGAGGCTCTCGCAC
16176782 CACCGACATT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.18, C:0.35, G:0.28, T:0.19
Consensus pattern (43 bp):
CTGCTCGAGGCTCTCGCACATCCGAGGCACCAAGGTGCCAATG
Found at i:16183139 original size:189 final size:188
Alignment explanation
Indices: 16182815--16183196 Score: 518
Period size: 189 Copynumber: 2.0 Consensus size: 188
16182805 ACTTAGTAGT
* * * *
16182815 TTTAACTGAAAATTTTTTCTATTGGCCCAAAAGAAATACAAGAAGCCGAATGAAATATGGCATGA
1 TTTAACTCAAAATTTTTTCTATTGGCCCAAAACAAATACAAGAAACCGAATGAAATATAGCATGA
* * * * *
16182880 TGGCATGGCACGACACTATAGAAAATTGAACAAGTACCCTGACCACCAACAGTTGGGAGCTCATA
66 TGGCATGGCACGACACGACAGAAAATTGAACAAGTACCCAGACCACCAACAATTGGGAGCTCACA
* * * * *
16182945 CCCGCACCACCATGGCCCCTGTTGTGCCATGTTTC-CTAAGGGGGCGGTACAGCCAAGTG
131 CCCGCACCACCA-CGCCCCCGTTATGCCATGTTTCTC-AAGGCGGCGGCACAGCCAAGTG
16183004 TTTAACTCAGAAA-TTTTTCTATTGGCCCAAAACAAATACAAGAAACCGAAT-AAAGTATAGCAT
1 TTTAACTCA-AAATTTTTTCTATTGGCCCAAAACAAATACAAGAAACCGAATGAAA-TATAGCAT
* * * * * *
16183067 GATGGCATGGCACGACACGGCAGAAAATTGAACAATTGCTCAGACCACTAATAATTGGGAGCTCA
64 GATGGCATGGCACGACACGACAGAAAATTGAACAAGTACCCAGACCACCAACAATTGGGAGCTCA
*
16183132 CACCCGCACCACCACGCCCCCGTTATGCCATGTTTCTCAAGGCGGCGGCACAGTCAAGTG
129 CACCCGCACCACCACGCCCCCGTTATGCCATGTTTCTCAAGGCGGCGGCACAGCCAAGTG
16183192 TTTAA
1 TTTAA
16183197 TTAACTCCTT
Statistics
Matches: 169, Mismatches: 21, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
188 46 0.27
189 120 0.71
190 3 0.02
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.22
Consensus pattern (188 bp):
TTTAACTCAAAATTTTTTCTATTGGCCCAAAACAAATACAAGAAACCGAATGAAATATAGCATGA
TGGCATGGCACGACACGACAGAAAATTGAACAAGTACCCAGACCACCAACAATTGGGAGCTCACA
CCCGCACCACCACGCCCCCGTTATGCCATGTTTCTCAAGGCGGCGGCACAGCCAAGTG
Found at i:16188188 original size:15 final size:15
Alignment explanation
Indices: 16188168--16188203 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
16188158 CAGACCGTCT
16188168 GTCACACACGGCTTA
1 GTCACACACGGCTTA
16188183 GTCACACACGGCTTA
1 GTCACACACGGCTTA
*
16188198 GACACA
1 GTCACA
16188204 TGCCCGTGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.31, C:0.33, G:0.19, T:0.17
Consensus pattern (15 bp):
GTCACACACGGCTTA
Found at i:16191846 original size:59 final size:59
Alignment explanation
Indices: 16191774--16191889 Score: 205
Period size: 59 Copynumber: 2.0 Consensus size: 59
16191764 TACGACGTCC
*
16191774 GAAAGCCCCATATGAACCTTGGGAATAGTTAGGATACATATGTCATGACATAGGATTTT
1 GAAAGCCCCATATGAACCTTAGGAATAGTTAGGATACATATGTCATGACATAGGATTTT
**
16191833 GAAAGCCCCATATGAACCTTAGGAATAGTTAGGATACATATGTTGTGACATAGGATT
1 GAAAGCCCCATATGAACCTTAGGAATAGTTAGGATACATATGTCATGACATAGGATT
16191890 CCGATATATT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.28
Consensus pattern (59 bp):
GAAAGCCCCATATGAACCTTAGGAATAGTTAGGATACATATGTCATGACATAGGATTTT
Found at i:16199630 original size:26 final size:26
Alignment explanation
Indices: 16199593--16199754 Score: 270
Period size: 26 Copynumber: 6.2 Consensus size: 26
16199583 TGATACAAAT
*
16199593 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
16199619 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
16199645 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
16199671 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
16199697 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
16199723 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
16199749 TGATAA
1 TGATAA
16199755 GAATTTCATG
Statistics
Matches: 126, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 126 1.00
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:16201350 original size:41 final size:41
Alignment explanation
Indices: 16201305--16201460 Score: 235
Period size: 41 Copynumber: 3.8 Consensus size: 41
16201295 ACCGGCTCTT
*
16201305 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
16201346 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
16201387 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
16201428 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
16201461 TAACGATAAA
Statistics
Matches: 107, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
39 2 0.02
40 2 0.02
41 98 0.92
42 2 0.02
43 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:16203017 original size:13 final size:13
Alignment explanation
Indices: 16202999--16203023 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16202989 CATTTAAATT
16202999 CACACAAAATAAA
1 CACACAAAATAAA
16203012 CACACAAAATAA
1 CACACAAAATAA
16203024 TATTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:16208730 original size:30 final size:32
Alignment explanation
Indices: 16208670--16208732 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 32
16208660 CACTTATTTT
16208670 CACCTATGCCGAATGCATACACATAAATATATC
1 CACCTATGCCGAATGCA-ACACATAAATATATC
* *
16208703 CACCTATGCCGAATGCAACATATATATATA
1 CACCTATGCCGAATGCAACACATAAATATA
16208733 CATATCTATC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 11 0.39
33 17 0.61
ACGTcount: A:0.40, C:0.25, G:0.10, T:0.25
Consensus pattern (32 bp):
CACCTATGCCGAATGCAACACATAAATATATC
Found at i:16208991 original size:41 final size:41
Alignment explanation
Indices: 16208946--16209338 Score: 777
Period size: 41 Copynumber: 9.6 Consensus size: 41
16208936 ACCGGCTCTT
*
16208946 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
16208987 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
16209028 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
16209069 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
16209110 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
16209151 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
16209192 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
16209233 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
16209274 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
16209315 AGCCTGCTAGACTTATAGTCTGAA
1 AGCCTGCTAGACTTATAGTCTGAA
16209339 NNNNNNNNNN
Statistics
Matches: 351, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 351 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:16213155 original size:18 final size:18
Alignment explanation
Indices: 16213132--16213167 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
16213122 TTTTTTGTGT
16213132 GCTTAATTAAATAAAATG
1 GCTTAATTAAATAAAATG
**
16213150 GCTTAATTGCATAAAATG
1 GCTTAATTAAATAAAATG
16213168 AAAACTTGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.33
Consensus pattern (18 bp):
GCTTAATTAAATAAAATG
Found at i:16214592 original size:12 final size:12
Alignment explanation
Indices: 16214575--16214599 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
16214565 ATGTAAGTGA
16214575 TCTTGATGATTT
1 TCTTGATGATTT
16214587 TCTTGATGATTT
1 TCTTGATGATTT
16214599 T
1 T
16214600 TACATTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:16215837 original size:55 final size:55
Alignment explanation
Indices: 16215735--16215838 Score: 138
Period size: 55 Copynumber: 1.9 Consensus size: 55
16215725 CTTGGGCAAT
* *
16215735 ACTGACTTATTAACACGGCCATGGCACACACCCGTGCTGCTTGCCCGTGGATGAC
1 ACTGACTTATTAACACGGCCATGGCACACACCCGTGCTGCCTACCCGTGGATGAC
* * * *
16215790 ACTGTCTTTTTAACACGGCCATGGCGCACGCCCGTG-TGGCCTACCCGTG
1 ACTGACTTATTAACACGGCCATGGCACACACCCGTGCT-GCCTACCCGTG
16215839 TACAACTTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 1 0.02
55 41 0.98
ACGTcount: A:0.18, C:0.34, G:0.25, T:0.23
Consensus pattern (55 bp):
ACTGACTTATTAACACGGCCATGGCACACACCCGTGCTGCCTACCCGTGGATGAC
Found at i:16218406 original size:48 final size:46
Alignment explanation
Indices: 16218302--16218721 Score: 193
Period size: 48 Copynumber: 8.7 Consensus size: 46
16218292 TTACAATGAG
16218302 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCAGACA-AG--
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-T-C-GACAGAGAT
* *
16218350 GGCTAGTGTAAGACATGTCTGGGACATGCATCAGGCCTCGACAGAGAT
1 AGCCAGTGTAAGACATGTCTGGGACATGCATC-GG-CTCGACAGAGAT
* ** * * *
16218398 AGCCAGTGTAAAATGTGTCTGGGACACGTATCGGCT--A-AGAGTT
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCGACAGAGAT
* * * * *
16218441 GTGCTAGTGTAAGACATGTCTGGGACAACTAGGCCCTATTTTAGGAT-GTTACA-ATGAG
1 -AGCCAGTGTAAGACATGTCTGGGAC-A-T--G--C-A---TCGGCTCG--ACAGA-GAT
16218499 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCAGACA-AG--
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-T-C-GACAGAGAT
* *
16218547 GGCTAGTGTAAGACATGTCTGGGACATGCATTCGGCCTCGACAGAGAT
1 AGCCAGTGTAAGACATGTCTGGGACATGCA-TCGG-CTCGACAGAGAT
* ** * * *
16218595 AGCCAGTGTAAAATGTGTCTGGGACACGTATCGGCT--A-AGAGTT
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCGACAGAGAT
* * * * * * *
16218638 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCATATATGAG
1 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCG-ACAGA-GAT
16218687 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
16218722 ACAATATATC
Statistics
Matches: 283, Mismatches: 50, Indels: 76
0.69 0.12 0.19
Matches are distributed among these distances:
43 10 0.04
44 49 0.17
45 9 0.03
46 18 0.06
47 43 0.15
48 86 0.30
49 18 0.06
50 7 0.02
51 5 0.02
52 1 0.00
53 2 0.01
54 4 0.01
55 2 0.01
56 1 0.00
57 14 0.05
58 14 0.05
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCGACAGAGAT
Found at i:16218463 original size:92 final size:93
Alignment explanation
Indices: 16218351--16218669 Score: 351
Period size: 92 Copynumber: 3.3 Consensus size: 93
16218341 CCAGACAAGG
16218351 GCTAGTGTAAGACATGTCTGGGACATGCA-TCAGGCCTCGACAGAGATAGCCAGTGTAAAATGTG
1 GCTAGTGTAAGACATGTCTGGGACATGCATTCAGGCCTCGACAGAGATAGCCAGTGTAAAATGTG
16218415 TCTGGGACACGTATCGGCTAAGAGTTGT
66 TCTGGGACACGTATCGGCTAAGAGTTGT
* * *
16218443 GCTAGTGTAAGACATGTCTGGGACAACTAGGCCCTATTTTAGG-AT-GTTACA-ATGAGAGCCAG
1 GCTAGTGTAAGACATGTCTGGGAC-A-T--G--C-A-TTCAGGCCTCG--ACAGA-GATAGCCAG
*** * * * *** *
16218505 TGTAAGACCATGTCTGGGACATGGCATCGGCATCCAGACAAGG
55 TGTAA-AATGTGTCTGGGACA-CGTATCGGC-T-AAGAGTTGT
16218548 GCTAGTGTAAGACATGTCTGGGACATGCATTC-GGCCTCGACAGAGATAGCCAGTGTAAAATGTG
1 GCTAGTGTAAGACATGTCTGGGACATGCATTCAGGCCTCGACAGAGATAGCCAGTGTAAAATGTG
16218612 TCTGGGACACGTATCGGCTAAGAGTTGT
66 TCTGGGACACGTATCGGCTAAGAGTTGT
16218640 GCTAGTGTAAGACATGTCTGGGACATGCAT
1 GCTAGTGTAAGACATGTCTGGGACATGCAT
16218670 CAGCACGCAT
Statistics
Matches: 182, Mismatches: 26, Indels: 38
0.74 0.11 0.15
Matches are distributed among these distances:
92 58 0.32
93 2 0.01
94 8 0.04
95 12 0.07
96 19 0.10
97 4 0.02
98 3 0.02
99 3 0.02
100 2 0.01
101 21 0.12
102 12 0.07
103 8 0.04
104 2 0.01
105 28 0.15
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATTCAGGCCTCGACAGAGATAGCCAGTGTAAAATGTG
TCTGGGACACGTATCGGCTAAGAGTTGT
Found at i:16218604 original size:197 final size:197
Alignment explanation
Indices: 16218269--16218664 Score: 776
Period size: 197 Copynumber: 2.0 Consensus size: 197
16218259 ACCACTATTT
16218269 CAACTAGGCCCTATTTTAGGATGTTACAATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCA
1 CAACTAGGCCCTATTTTAGGATGTTACAATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCA
16218334 TCGGCATCCAGACAAGGGCTAGTGTAAGACATGTCTGGGACATGCATCAGGCCTCGACAGAGATA
66 TCGGCATCCAGACAAGGGCTAGTGTAAGACATGTCTGGGACATGCATCAGGCCTCGACAGAGATA
16218399 GCCAGTGTAAAATGTGTCTGGGACACGTATCGGCTAAGAGTTGTGCTAGTGTAAGACATGTCTGG
131 GCCAGTGTAAAATGTGTCTGGGACACGTATCGGCTAAGAGTTGTGCTAGTGTAAGACATGTCTGG
16218464 GA
196 GA
16218466 CAACTAGGCCCTATTTTAGGATGTTACAATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCA
1 CAACTAGGCCCTATTTTAGGATGTTACAATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCA
16218531 TCGGCATCCAGACAAGGGCTAGTGTAAGACATGTCTGGGACATGCATTC-GGCCTCGACAGAGAT
66 TCGGCATCCAGACAAGGGCTAGTGTAAGACATGTCTGGGACATGCA-TCAGGCCTCGACAGAGAT
16218595 AGCCAGTGTAAAATGTGTCTGGGACACGTATCGGCTAAGAGTTGTGCTAGTGTAAGACATGTCTG
130 AGCCAGTGTAAAATGTGTCTGGGACACGTATCGGCTAAGAGTTGTGCTAGTGTAAGACATGTCTG
16218660 GGA
195 GGA
16218663 CA
1 CA
16218665 TGCATCAGCA
Statistics
Matches: 198, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
197 196 0.99
198 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (197 bp):
CAACTAGGCCCTATTTTAGGATGTTACAATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCA
TCGGCATCCAGACAAGGGCTAGTGTAAGACATGTCTGGGACATGCATCAGGCCTCGACAGAGATA
GCCAGTGTAAAATGTGTCTGGGACACGTATCGGCTAAGAGTTGTGCTAGTGTAAGACATGTCTGG
GA
Found at i:16225250 original size:12 final size:12
Alignment explanation
Indices: 16225233--16225257 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
16225223 ATGTAAGTGA
16225233 TCTTGATGATTT
1 TCTTGATGATTT
16225245 TCTTGATGATTT
1 TCTTGATGATTT
16225257 T
1 T
16225258 TACATTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:16226036 original size:47 final size:47
Alignment explanation
Indices: 16225968--16226371 Score: 285
Period size: 47 Copynumber: 8.6 Consensus size: 47
16225958 TTTGTGCACC
* * *
16225968 AGTGTAAGA-CATGTCTTGGACATGCTTCGGCCACATTATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCACATTATGAGAGCT
* * * *
16226014 AGTGTAAGACCATGTCTAGGACATGGCATCTA--CATCCA-GACGAGGGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATC-AGCCA--CATTATGAGAGCT
* * * * *
16226062 AGTGTAA-AACATGTTTGGGACAAGCATCAGCCATATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCACATTATGAGAGCT
* * * *
16226108 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCATCCA-GACGAGGGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCAGCCA--CATTATGAGAGCT
* * * *
16226156 AGTGTAAGA-CATGTCTAGGACATGCATCAACCATATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCACATTATGAGAGCT
* * * * * * *
16226202 AGGGTAAGACCATGTCTAGGACATGGCATC-GGCATCCA-GACGAGGGTT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCAGCCA--CATTATGAGAGCT
* * *
16226250 AGTGTAAGA-CATGTTTGGGACATGCATCAGCCATATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCACATTATGAGAGCT
** * * *
16226296 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CACAGAGATCAGTGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCAGCCACA-TTATGAGAGCT
*
16226344 AGAGTAAGA-CATGTCTGGGACATGCATC
1 AGTGTAAGACCATGTCTGGGACATGCATC
16226372 GGCCTCGACA
Statistics
Matches: 277, Mismatches: 58, Indels: 46
0.73 0.15 0.12
Matches are distributed among these distances:
45 4 0.01
46 70 0.25
47 121 0.44
48 78 0.28
49 4 0.01
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATCAGCCACATTATGAGAGCT
Found at i:16226130 original size:94 final size:94
Alignment explanation
Indices: 16225968--16226514 Score: 596
Period size: 94 Copynumber: 5.8 Consensus size: 94
16225958 TTTGTGCACC
* * * *
16225968 AGTGTAAGACATGTCTT-GGACATGCTTCGGCCACATTATGAGAGCTAGTGTAAGACCATGTCTA
1 AGTGTAAGACATGT-TTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTA
**
16226032 GGACATGGCATCTACATCCAGACGAGGGCT
65 GGACATGGCATCGGCATCCAGACGAGGGCT
* * *
16226062 AGTGTAAAACATGTTTGGGACAAGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTAG
16226127 GACATGGCATCGGCATCCAGACGAGGGCT
66 GACATGGCATCGGCATCCAGACGAGGGCT
* * * *
16226156 AGTGTAAGACATGTCTAGGACATGCATCAACCATATTATGAGAGCCAGGGTAAGACCATGTCTAG
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTAG
*
16226221 GACATGGCATCGGCATCCAGACGAGGGTT
66 GACATGGCATCGGCATCCAGACGAGGGCT
*
16226250 AGTGTAAGACATGTTTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTAG
* * * *
16226315 GACATGGCATCAGCA-CAGAGATC-AGTGCC
66 GACATGGCATCGGCATC-CAGA-CGAGGGCT
* * * * * * *
16226344 AGAGTAAGACATGTCTGGGACATGCATCGGCC-TCGA-CA-GAGATAGCCAATGTAA-AACGTGT
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCAT--ATTATGAG--AGCCAGTGTAAGACCATGT
* * * * * *
16226405 CTGGGACA-CGTATCGGC-T-AAGA-GTTGTGCT
62 CTAGGACATGGCATCGGCATCCAGACG-AGGGCT
* *
16226435 AGTGTAAGACATGTTTGGGACATGCATTAGCACGCATA-TATGAGAGCCAGTATAAGACCATGTC
1 AGTGTAAGACATGTTTGGGACATGCATCAG--C-CATATTATGAGAGCCAGTGTAAGACCATGTC
*
16226499 TAGGACATGGCGTCGG
63 TAGGACATGGCATCGG
16226515 TAATATATCC
Statistics
Matches: 383, Mismatches: 53, Indels: 34
0.81 0.11 0.07
Matches are distributed among these distances:
91 33 0.09
92 9 0.02
93 28 0.07
94 300 0.78
95 13 0.03
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (94 bp):
AGTGTAAGACATGTTTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTAG
GACATGGCATCGGCATCCAGACGAGGGCT
Found at i:16228288 original size:35 final size:34
Alignment explanation
Indices: 16228179--16228324 Score: 85
Period size: 35 Copynumber: 4.2 Consensus size: 34
16228169 AGGTAAGTAC
* * * *
16228179 ATGTAAGCTTATATTGAACTGGTACATTCAGCTGT
1 ATGTGAGCTTATATTGAA-TTGTACATTCGGCTAT
* * * * ** *
16228214 ATGTGAGGTTACATTGAATTTTAGCATTTGATTAC
1 ATGTGAGCTTATATTGAATTGTA-CATTCGGCTAT
* *
16228249 ATGTGAGCTTATATTGAACTTGTATATTCGGTTAT
1 ATGTGAGCTTATATTGAA-TTGTACATTCGGCTAT
** * * * *
16228284 ATGTGAAATTATCTTGAATGTGCATATTCGGCCAT
1 ATGTGAGCTTATATTGAAT-TGTACATTCGGCTAT
16228319 ATGTGA
1 ATGTGA
16228325 TGTTCTTTTG
Statistics
Matches: 84, Mismatches: 24, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
34 4 0.05
35 76 0.90
36 4 0.05
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (34 bp):
ATGTGAGCTTATATTGAATTGTACATTCGGCTAT
Found at i:16257964 original size:46 final size:46
Alignment explanation
Indices: 16257820--16258083 Score: 175
Period size: 46 Copynumber: 5.6 Consensus size: 46
16257810 TTTGTGTGCT
* * *
16257820 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATG-AGAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGCA-AGGC
* * * *
16257866 AATGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA--CGAGAGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGCAAG-GC
* *
16257913 TAGTGTAAGAAATGTTTGGGACATGCATCGGCCTCGAGATGCAAGGC
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGCAAGGC
* * * * *
16257960 AGTGTAAGACATGTTTGGGACATGCATCGG-CTACAAAATG--TGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGCAAGGC
* * * * *
16258004 AGTGTAAGACCATGTTTGGGACATGGCATCGGCAC-GGATATGTGAGAGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTCGAGATG-CA-AGGC
16258054 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
16258084 TACTTGATGG
Statistics
Matches: 178, Mismatches: 23, Indels: 30
0.77 0.10 0.13
Matches are distributed among these distances:
44 11 0.06
45 16 0.09
46 68 0.38
47 29 0.16
48 21 0.12
49 1 0.01
50 32 0.18
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGCAAGGC
Found at i:16258060 original size:94 final size:94
Alignment explanation
Indices: 16257817--16258083 Score: 282
Period size: 94 Copynumber: 2.9 Consensus size: 94
16257807 TCATTTGTGT
* * *
16257817 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AT-TATGAGAGTCAATGTAAGACCATG
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGG-CACGATATGTGAGAGTCAGTGTAAGACCATG
* **
16257880 TCTGGGACATGGCATCGGCATTGAGACGAGA
65 TCTGGGACATGGCATCGGCA-TGACAAAAGA
* * * * *
16257911 GCTAGTGTAAGAAATGTTTGGGACATGCATCGGCCTCGAGATG-CA-AGGCAGTGTAAGA-CATG
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGG-CACGATATGTGAGAGTCAGTGTAAGACCATG
* *
16257973 TTTGGGACAT-GCATCGGC-T-ACAAAATGT
65 TCTGGGACATGGCATCGGCATGACAAAA-GA
16258001 G-TCAGTGTAAGACCATGTTTGGGACATGGCATCGGCACGGATATGTGAGAGTCAGTGTAAGACC
1 GCT-AGTGTAAGA-CATGTTTGGGACAT-GCATCGGCAC-GATATGTGAGAGTCAGTGTAAGACC
16258065 ATGTCTGGGACATGGCATC
62 ATGTCTGGGACATGGCATC
16258084 TACTTGATGG
Statistics
Matches: 143, Mismatches: 19, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
89 4 0.03
90 12 0.08
91 15 0.10
92 20 0.14
93 14 0.10
94 57 0.40
95 15 0.10
96 6 0.04
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATCGGCACGATATGTGAGAGTCAGTGTAAGACCATGT
CTGGGACATGGCATCGGCATGACAAAAGA
Found at i:16259440 original size:42 final size:41
Alignment explanation
Indices: 16259322--16259488 Score: 147
Period size: 43 Copynumber: 3.9 Consensus size: 41
16259312 GGAACATTGA
* * * *
16259322 CATCGATCTGAGATATCGTGTAACACCGTGTCTGGGACATAGG
1 CATCGATCT--GATTTCATGTAAGACCCTGTCTGGGACATAGG
* * * *
16259365 CCTCGATTTGAGATTTACATGTAAGACCATGTCTGGGACATCGG
1 CATCGATCT--GATTT-CATGTAAGACCCTGTCTGGGACATAGG
* *
16259409 CATCGTATCTGATTTCGTGTAAGACCCTGTCTGGGACAGAGG
1 CATCG-ATCTGATTTCATGTAAGACCCTGTCTGGGACATAGG
*
16259451 CATCGATACTGAATTACATGTAAGACCAC-GTCTGGGAC
1 CATCGAT-CTG-ATTTCATGTAAGACC-CTGTCTGGGAC
16259489 GTCGGCATTG
Statistics
Matches: 104, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
41 2 0.02
42 31 0.30
43 40 0.38
44 28 0.27
45 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (41 bp):
CATCGATCTGATTTCATGTAAGACCCTGTCTGGGACATAGG
Found at i:16259487 original size:43 final size:43
Alignment explanation
Indices: 16259351--16259488 Score: 149
Period size: 42 Copynumber: 3.2 Consensus size: 43
16259341 GTAACACCGT
* * *
16259351 GTCTGGGACATAGGCCTCGAT-TTGAGATTTACATGTAAGACCAT
1 GTCTGGGACATAGGCATCGATACTGA-A-TTACATGTAAGACCAC
* * *
16259395 GTCTGGGACATCGGCATCG-TATCTG-ATTTCGTGTAAGACC-C
1 GTCTGGGACATAGGCATCGATA-CTGAATTACATGTAAGACCAC
*
16259436 TGTCTGGGACAGAGGCATCGATACTGAATTACATGTAAGACCAC
1 -GTCTGGGACATAGGCATCGATACTGAATTACATGTAAGACCAC
16259480 GTCTGGGAC
1 GTCTGGGAC
16259489 GTCGGCATTG
Statistics
Matches: 78, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
42 32 0.41
43 26 0.33
44 18 0.23
45 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (43 bp):
GTCTGGGACATAGGCATCGATACTGAATTACATGTAAGACCAC
Found at i:16259488 original size:85 final size:86
Alignment explanation
Indices: 16259337--16259496 Score: 234
Period size: 86 Copynumber: 1.9 Consensus size: 86
16259327 ATCTGAGATA
* * * * *
16259337 TCGTGTAACACCGTGTCTGGGACATAGGCCTCGATTTGAGATTTACATGTAAGACCATGTCTGGG
1 TCGTGTAACACCCTGTCTGGGACAGAGGCATCGATCTGAGATTTACATGTAAGACCACGTCTGGG
16259402 ACATCGGCATCGTATCTGATT
66 ACATCGGCATCGTATCTGATT
*
16259423 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGATACTGA-A-TTACATGTAAGACCACGTCTGG
1 TCGTGTAACACCCTGTCTGGGACAGAGGCATCGAT-CTGAGATTTACATGTAAGACCACGTCTGG
*
16259486 GACGTCGGCAT
65 GACATCGGCAT
16259497 TGTACCCGTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
85 31 0.47
86 32 0.48
87 3 0.05
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (86 bp):
TCGTGTAACACCCTGTCTGGGACAGAGGCATCGATCTGAGATTTACATGTAAGACCACGTCTGGG
ACATCGGCATCGTATCTGATT
Done.