Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56482370
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1659275 characters in sequence are not A, C, G, or T
File 53 of 172
Found at i:17353675 original size:21 final size:21
Alignment explanation
Indices: 17353633--17353675 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
17353623 GCTGTTGAGA
* *
17353633 AGGAAGTTGCTGCTGCAGAAG
1 AGGAAGTTGCTGCTGAAAAAG
*
17353654 AGGAAGTTGTTGCTGAAAAAG
1 AGGAAGTTGCTGCTGAAAAAG
17353675 A
1 A
17353676 ATTTGCTGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.09, G:0.35, T:0.21
Consensus pattern (21 bp):
AGGAAGTTGCTGCTGAAAAAG
Found at i:17355025 original size:30 final size:30
Alignment explanation
Indices: 17354991--17355048 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
17354981 AAATAGGGCA
* *
17354991 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
17355021 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
17355049 ATATAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:17355498 original size:47 final size:47
Alignment explanation
Indices: 17355388--17355656 Score: 149
Period size: 47 Copynumber: 5.7 Consensus size: 47
17355378 TGATTTGTGC
*** **
17355388 GCCAGTGTAAGACATGTCTGGGACAT-GTTTCGGCCACATTGTGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGGCAACGGCCACAGAGTGAGA
*
17355434 GCCAGTGTAAGACCATGTCTGGGACATGGCAACGG-CACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACATGGCAACGGCCACAGAG-TGAGA
* * * * * * *
17355482 GCCAGAGTAAGACATGTCTGGGACAT-GCATCGACCTCGACAGAGATA
1 GCCAGTGTAAGACATGTCTGGGACATGGCAACGGCCAC-AGAGTGAGA
*** * * * * * *
17355529 GCCAGTGTAAGATGGGTTTGGGACA-CGCATCGGCTA-AGAGT-TGT
1 GCCAGTGTAAGACATGTCTGGGACATGGCAACGGCCACAGAGTGAGA
* * * * *
17355573 GCTAGTGTAAGACATGTCTGGGACAT-GCATCAG-CACGCGTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGGCAACGGCCAC-AG-A-GTGAGA
* * *
17355621 GCCAGTATAAGACCATTTCTGGGACATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACATGGCAACGGC
17355657 AATATATCCC
Statistics
Matches: 166, Mismatches: 42, Indels: 25
0.71 0.18 0.11
Matches are distributed among these distances:
43 1 0.01
44 26 0.16
45 4 0.02
46 18 0.11
47 65 0.39
48 33 0.20
49 13 0.08
50 6 0.04
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGGCAACGGCCACAGAGTGAGA
Found at i:17358411 original size:43 final size:43
Alignment explanation
Indices: 17358350--17358444 Score: 181
Period size: 43 Copynumber: 2.2 Consensus size: 43
17358340 GGAGGGGTCA
*
17358350 CACGCCCGTGTGCCCCAACCATGTCCCTTACACGGCAAAGTGG
1 CACGCCCGTATGCCCCAACCATGTCCCTTACACGGCAAAGTGG
17358393 CACGCCCGTATGCCCCAACCATGTCCCTTACACGGCAAAGTGG
1 CACGCCCGTATGCCCCAACCATGTCCCTTACACGGCAAAGTGG
17358436 CACGCCCGT
1 CACGCCCGT
17358445 GTCTCCGGTC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.21, C:0.41, G:0.22, T:0.16
Consensus pattern (43 bp):
CACGCCCGTATGCCCCAACCATGTCCCTTACACGGCAAAGTGG
Found at i:17366143 original size:44 final size:43
Alignment explanation
Indices: 17366095--17366208 Score: 133
Period size: 44 Copynumber: 2.6 Consensus size: 43
17366085 AAAAGAAAAC
*
17366095 ATAATTAAGTTAAAAAGTTTT-AAAAAATTAAATAAAAATATTGA
1 ATAATTAA--TAAAAAGTTTTAAAAAAATTAAATAAAAATATGGA
* * *
17366139 ATAATTTATAGAAATTTTTAAAAAAAATTAAATAAAAATATGGA
1 ATAATTAATAAAAAGTTTT-AAAAAAATTAAATAAAAATATGGA
*
17366183 ATAATTTATAGAAAA-TTTTAAAAAAA
1 ATAATTAATA-AAAAGTTTTAAAAAAA
17366209 ATCTAACTTC
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
42 9 0.15
43 7 0.11
44 43 0.69
45 3 0.05
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (43 bp):
ATAATTAATAAAAAGTTTTAAAAAAATTAAATAAAAATATGGA
Found at i:17366209 original size:44 final size:44
Alignment explanation
Indices: 17366116--17366210 Score: 172
Period size: 44 Copynumber: 2.2 Consensus size: 44
17366106 AAAAAGTTTT
* *
17366116 AAAAAATTAAATAAAAATATTGAATAATTTATAGAAATTTTTAA
1 AAAAAATTAAATAAAAATATGGAATAATTTATAGAAAATTTTAA
17366160 AAAAAATTAAATAAAAATATGGAATAATTTATAGAAAATTTTAA
1 AAAAAATTAAATAAAAATATGGAATAATTTATAGAAAATTTTAA
17366204 AAAAAAT
1 AAAAAAT
17366211 CTAACTTCCT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 49 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (44 bp):
AAAAAATTAAATAAAAATATGGAATAATTTATAGAAAATTTTAA
Found at i:17370011 original size:186 final size:186
Alignment explanation
Indices: 17369697--17370069 Score: 728
Period size: 186 Copynumber: 2.0 Consensus size: 186
17369687 TGGCTAAATA
*
17369697 TGATCATATATGGTCCTATGTATGTCAAAATTTCTAATTGATCATGGAAAACTATGAAATAGGTA
1 TGATCATATATGGTCCTATGTATGTCAAAATTTCTAATTGATCATGGAAAACTAAGAAATAGGTA
*
17369762 AAACTTACCTTGAGATCAGATGCTGACGGCAGCAGTAGGGTGAATTTTAAAATTCACTAAAAATA
66 AAACTTACCTTGAGATCAGATGCTGACGACAGCAGTAGGGTGAATTTTAAAATTCACTAAAAATA
17369827 GTAGAAATGGAATTAAATAATGAATAAATTATGTAATCGAAACGTGATGAGTCTAT
131 GTAGAAATGGAATTAAATAATGAATAAATTATGTAATCGAAACGTGATGAGTCTAT
17369883 TGATCATATATGGTCCTATGTATGTCAAAATTTCTAATTGATCATGGAAAACTAAGAAATAGGTA
1 TGATCATATATGGTCCTATGTATGTCAAAATTTCTAATTGATCATGGAAAACTAAGAAATAGGTA
17369948 AAACTTACCTTGAGATCAGATGCTGACGACAGCAGTAGGGTGAATTTTAAAATTCACTAAAAATA
66 AAACTTACCTTGAGATCAGATGCTGACGACAGCAGTAGGGTGAATTTTAAAATTCACTAAAAATA
17370013 GTAGAAATGGAATTAAATAATGAATAAATTATGTAATCGAAACGTGATGAGTCTAT
131 GTAGAAATGGAATTAAATAATGAATAAATTATGTAATCGAAACGTGATGAGTCTAT
17370069 T
1 T
17370070 TCATATGAAA
Statistics
Matches: 185, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
186 185 1.00
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.31
Consensus pattern (186 bp):
TGATCATATATGGTCCTATGTATGTCAAAATTTCTAATTGATCATGGAAAACTAAGAAATAGGTA
AAACTTACCTTGAGATCAGATGCTGACGACAGCAGTAGGGTGAATTTTAAAATTCACTAAAAATA
GTAGAAATGGAATTAAATAATGAATAAATTATGTAATCGAAACGTGATGAGTCTAT
Found at i:17370574 original size:150 final size:150
Alignment explanation
Indices: 17370303--17370584 Score: 501
Period size: 150 Copynumber: 1.9 Consensus size: 150
17370293 AGATATCTAA
* *
17370303 GTCGTAGTGCATGAAGGTCAGAGTAGTCGAACCCTGAAACAGGGGTGACTTTAACTAATAAAATG
1 GTCGTAATGCATGAAGGTCACAGTAGTCGAACCCTGAAACAGGGGTGACTTTAACTAATAAAATG
*
17370368 TACTAATTGGCCAGACCAAAAATTCTAGAAAAAAATATGTAGATGGATTTATGAGTCTAGTTTTG
66 TACTAATTGGCCAGACCAAAAATTCTAGAAAAAAATATGTAGATGGATATATGAGTCTAGTTTTG
17370433 GGGAAAATTTATGGAATTTG
131 GGGAAAATTTATGGAATTTG
*
17370453 GTCGTAATGCATGAAGGTCACAGTAGTCGAACCCTGAAACAGGGGTGACTTTAACTAATAAACTG
1 GTCGTAATGCATGAAGGTCACAGTAGTCGAACCCTGAAACAGGGGTGACTTTAACTAATAAAATG
* * *
17370518 TACTAATTGGCCTGACCAAAAATTCTAGAAAAAAATCTGTAGGTGGATATATGAGTCTAGTTTTG
66 TACTAATTGGCCAGACCAAAAATTCTAGAAAAAAATATGTAGATGGATATATGAGTCTAGTTTTG
17370583 GG
131 GG
17370585 TCATGCCTTA
Statistics
Matches: 125, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
150 125 1.00
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (150 bp):
GTCGTAATGCATGAAGGTCACAGTAGTCGAACCCTGAAACAGGGGTGACTTTAACTAATAAAATG
TACTAATTGGCCAGACCAAAAATTCTAGAAAAAAATATGTAGATGGATATATGAGTCTAGTTTTG
GGGAAAATTTATGGAATTTG
Found at i:17384563 original size:19 final size:19
Alignment explanation
Indices: 17384535--17384624 Score: 67
Period size: 19 Copynumber: 4.6 Consensus size: 19
17384525 ATTTTAAAAT
*
17384535 CAAGTGAAAATGA-TTTAA
1 CAAGTCAAAATGATTTTAA
* *
17384553 CCAAGTCAAAATGATCTCAA
1 -CAAGTCAAAATGATTTTAA
* * *
17384573 TTAAGTTAAAATCATTTTAA
1 -CAAGTCAAAATGATTTTAA
17384593 CACA-TCAAAATGATTTTCAAA
1 CA-AGTCAAAATGATTTT--AA
17384614 CAAGTCAAAAT
1 CAAGTCAAAAT
17384625 TGCTCTAGGC
Statistics
Matches: 54, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
19 24 0.44
20 19 0.35
21 11 0.20
ACGTcount: A:0.48, C:0.14, G:0.09, T:0.29
Consensus pattern (19 bp):
CAAGTCAAAATGATTTTAA
Found at i:17388699 original size:74 final size:74
Alignment explanation
Indices: 17388588--17388727 Score: 212
Period size: 74 Copynumber: 1.9 Consensus size: 74
17388578 TATCCATCGA
* * * *
17388588 CAAAGAAAAAGTAAAACTCCCTTGCTCGTGCAGGGATTCGAACACAAGACCTTCAGCAAACTCAC
1 CAAAGAAAAAGTAAAACTCCCTTACTCGCGCAAGGATTCGAACACAAGACCTTCAACAAACTCAC
17388653 ATCAATCAG
66 ATCAATCAG
17388662 CAAAGCAAAAA-TAAAACT-CCTTCACTCGCGCAAGGATTCGAACACAAGACCTTCAACAAACTC
1 CAAAG-AAAAAGTAAAACTCCCTT-ACTCGCGCAAGGATTCGAACACAAGACCTTCAACAAACTC
17388725 ACA
64 ACA
17388728 CTCCACCTAA
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
73 4 0.07
74 51 0.85
75 5 0.08
ACGTcount: A:0.41, C:0.29, G:0.14, T:0.16
Consensus pattern (74 bp):
CAAAGAAAAAGTAAAACTCCCTTACTCGCGCAAGGATTCGAACACAAGACCTTCAACAAACTCAC
ATCAATCAG
Found at i:17391483 original size:25 final size:25
Alignment explanation
Indices: 17391449--17391497 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
17391439 CTCATACCAG
17391449 ATAGAATGGCTCAGGTAAATTTGTT
1 ATAGAATGGCTCAGGTAAATTTGTT
17391474 ATAGAATGGCTCAGGTAAATTTGT
1 ATAGAATGGCTCAGGTAAATTTGT
17391498 GTTAAGTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.35
Consensus pattern (25 bp):
ATAGAATGGCTCAGGTAAATTTGTT
Found at i:17393964 original size:16 final size:16
Alignment explanation
Indices: 17393940--17393970 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
17393930 TTATTTTTTT
17393940 AATTATTTGAATTAAA
1 AATTATTTGAATTAAA
*
17393956 AATTGTTTGAATTAA
1 AATTATTTGAATTAA
17393971 TACTAAATCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (16 bp):
AATTATTTGAATTAAA
Found at i:17395934 original size:20 final size:20
Alignment explanation
Indices: 17395909--17395973 Score: 71
Period size: 20 Copynumber: 3.2 Consensus size: 20
17395899 AATTATTGTA
17395909 TGATTGCACATATGTGCCCT
1 TGATTGCACATATGTGCCCT
* * *
17395929 TGATTGTAC-TTTGGTACCGC-
1 TGATTGCACATAT-GTGCC-CT
17395949 TGATTGCACATATGTGCCCT
1 TGATTGCACATATGTGCCCT
17395969 TGATT
1 TGATT
17395974 ATACTTCGGT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
19 3 0.09
20 29 0.83
21 3 0.09
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (20 bp):
TGATTGCACATATGTGCCCT
Found at i:17395964 original size:40 final size:39
Alignment explanation
Indices: 17395909--17396169 Score: 236
Period size: 40 Copynumber: 6.5 Consensus size: 39
17395899 AATTATTGTA
*
17395909 TGATTGCACATATGTGCCCTTGATTGTACTTTGGTACCGC
1 TGATTGCACATATGTGCCCCTGATTGTACTTTGGTACC-C
* * *
17395949 TGATTGCACATATGTGCCCTTGATTATACTTCGGTACCCC
1 TGATTGCACATATGTGCCCCTGATTGTACTTTGGTA-CCC
* * * * *
17395989 TGATTGCACATACGTGCCCCTGATTATACTTCGTTACCTT
1 TGATTGCACATATGTGCCCCTGATTGTACTTTGGTACC-C
* * * *
17396029 TGATTGCACATACGTGTCCCAGTTTGTACTTTGGTACCC
1 TGATTGCACATATGTGCCCCTGATTGTACTTTGGTACCC
* * * *
17396068 TTGTTTGTACATATGTACCCCT-ATTTGTACTTTGATACCCC
1 -TGATTGCACATATGTGCCCCTGA-TTGTACTTTGGTA-CCC
* * * * *
17396109 TAATTGCACTTACGTGCCCCTGACTGTACTTTGGCAACCC
1 TGATTGCACATATGTGCCCCTGATTGTACTTTGG-TACCC
* *
17396149 TGAATGCACTTATGTGCCCCT
1 TGATTGCACATATGTGCCCCT
17396170 ATTTTTACTG
Statistics
Matches: 181, Mismatches: 33, Indels: 14
0.79 0.14 0.06
Matches are distributed among these distances:
39 2 0.01
40 172 0.95
41 7 0.04
ACGTcount: A:0.19, C:0.27, G:0.18, T:0.36
Consensus pattern (39 bp):
TGATTGCACATATGTGCCCCTGATTGTACTTTGGTACCC
Found at i:17395992 original size:20 final size:20
Alignment explanation
Indices: 17395969--17396026 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
17395959 TATGTGCCCT
17395969 TGATTATACTTCGGTACCCC
1 TGATTATACTTCGGTACCCC
** * *
17395989 TGATTGCACATAC-GTGCCCC
1 TGATTATAC-TTCGGTACCCC
*
17396009 TGATTATACTTCGTTACC
1 TGATTATACTTCGGTACC
17396027 TTTGATTGCA
Statistics
Matches: 27, Mismatches: 9, Indels: 4
0.68 0.22 0.10
Matches are distributed among these distances:
19 2 0.07
20 23 0.85
21 2 0.07
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (20 bp):
TGATTATACTTCGGTACCCC
Found at i:17396075 original size:20 final size:20
Alignment explanation
Indices: 17396050--17396109 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
17396040 ACGTGTCCCA
*
17396050 GTTTGTACTTTGGTACCCTT
1 GTTTGTACTTTGGTACCCCT
*
17396070 GTTTGTACATAT-GTACCCCT
1 GTTTGTAC-TTTGGTACCCCT
* *
17396090 ATTTGTACTTTGATACCCCT
1 GTTTGTACTTTGGTACCCCT
17396110 AATTGCACTT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
19 2 0.06
20 29 0.88
21 2 0.06
ACGTcount: A:0.17, C:0.23, G:0.15, T:0.45
Consensus pattern (20 bp):
GTTTGTACTTTGGTACCCCT
Found at i:17396169 original size:20 final size:20
Alignment explanation
Indices: 17396113--17396169 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
17396103 TACCCCTAAT
* *
17396113 TGCACTTACGTGCCCCTGAC
1 TGCACTTATGTGCCCCTGAA
*
17396133 TGTACTT-TG-GCAACCCTGAA
1 TGCACTTATGTGC--CCCTGAA
17396153 TGCACTTATGTGCCCCT
1 TGCACTTATGTGCCCCT
17396170 ATTTTTACTG
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
18 2 0.07
19 1 0.03
20 22 0.76
21 2 0.07
22 2 0.07
ACGTcount: A:0.18, C:0.33, G:0.19, T:0.30
Consensus pattern (20 bp):
TGCACTTATGTGCCCCTGAA
Found at i:17403304 original size:18 final size:18
Alignment explanation
Indices: 17403278--17403329 Score: 86
Period size: 18 Copynumber: 2.8 Consensus size: 18
17403268 TTGTTTGCAC
17403278 TTTGAGCATTGAATGCTCA
1 TTTG-GCATTGAATGCTCA
17403297 TTTGGCATTGAATGCTCA
1 TTTGGCATTGAATGCTCA
*
17403315 TTTGGCTTTGAATGC
1 TTTGGCATTGAATGC
17403330 CGATGGTTTC
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
18 28 0.88
19 4 0.12
ACGTcount: A:0.21, C:0.15, G:0.23, T:0.40
Consensus pattern (18 bp):
TTTGGCATTGAATGCTCA
Found at i:17405981 original size:39 final size:40
Alignment explanation
Indices: 17405913--17406002 Score: 119
Period size: 39 Copynumber: 2.3 Consensus size: 40
17405903 TTATTGTATG
* *
17405913 ATTGCACATACATGCTCCTGATTGTACTTCAGTACCCCTA
1 ATTGCACATACATGCCCCTAATTGTACTTCAGTACCCCTA
* * *
17405953 ATTGCACATA-GTGCCCCTAATTGTACTTCGGTACCCCTG
1 ATTGCACATACATGCCCCTAATTGTACTTCAGTACCCCTA
*
17405992 ATTCCACATAC
1 ATTGCACATAC
17406003 GTTCCCTTGT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
39 33 0.77
40 10 0.23
ACGTcount: A:0.24, C:0.31, G:0.13, T:0.31
Consensus pattern (40 bp):
ATTGCACATACATGCCCCTAATTGTACTTCAGTACCCCTA
Found at i:17406059 original size:20 final size:20
Alignment explanation
Indices: 17406030--17406100 Score: 54
Period size: 20 Copynumber: 3.5 Consensus size: 20
17406020 TCAATACCTG
*
17406030 TGATTTTACTTACGTGCCCC
1 TGATTATACTTACGTGCCCC
* *
17406050 TGGTTATACTT-CAGTACCCC
1 TGATTATACTTAC-GTGCCCC
* ** *
17406070 TGAATGCATTTACGTGCCCC
1 TGATTATACTTACGTGCCCC
*
17406090 TGTTTATACTT
1 TGATTATACTT
17406101 TGGTAACTCT
Statistics
Matches: 35, Mismatches: 14, Indels: 4
0.66 0.26 0.08
Matches are distributed among these distances:
19 1 0.03
20 33 0.94
21 1 0.03
ACGTcount: A:0.18, C:0.27, G:0.15, T:0.39
Consensus pattern (20 bp):
TGATTATACTTACGTGCCCC
Found at i:17406113 original size:40 final size:40
Alignment explanation
Indices: 17406039--17406114 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
17406029 GTGATTTTAC
*
17406039 TTACGTGCCCCTGGTTATACTTCAGTACCCCTGAATGCAT
1 TTACGTGCCCCTGGTTATACTTCAGTAACCCTGAATGCAT
* ** *
17406079 TTACGTGCCCCTGTTTATACTTTGGTAACTCTGAAT
1 TTACGTGCCCCTGGTTATACTTCAGTAACCCTGAAT
17406115 AAAATAGAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.37
Consensus pattern (40 bp):
TTACGTGCCCCTGGTTATACTTCAGTAACCCTGAATGCAT
Found at i:17408917 original size:34 final size:34
Alignment explanation
Indices: 17408861--17408933 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 34
17408851 CATGTTGTAT
17408861 TGAAATAGGCTAAGACCCAGACTGCCACTGATAC
1 TGAAATAGGCTAAGACCCAGACTGCCACTGATAC
* * * * ** *
17408895 TGAAATGGGCTCAGGCCTAGACTGTTACTGCTAC
1 TGAAATAGGCTAAGACCCAGACTGCCACTGATAC
17408929 TGAAA
1 TGAAA
17408934 GAGGGGCTAA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (34 bp):
TGAAATAGGCTAAGACCCAGACTGCCACTGATAC
Found at i:17420272 original size:18 final size:19
Alignment explanation
Indices: 17420249--17420284 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
17420239 GTTTGGGTAC
*
17420249 TGTTTAGCCGCCA-AGAGG
1 TGTTTAGCAGCCACAGAGG
17420267 TGTTTAGCAGCCACAGAG
1 TGTTTAGCAGCCACAGAG
17420285 AGGCCGTGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.22
Consensus pattern (19 bp):
TGTTTAGCAGCCACAGAGG
Found at i:17428721 original size:40 final size:41
Alignment explanation
Indices: 17428642--17428830 Score: 258
Period size: 41 Copynumber: 4.7 Consensus size: 41
17428632 TTGGGGTTTA
*
17428642 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAACCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
17428683 AATCCGAGCTTGGTCTTGAAGGG-TTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
17428723 AGTCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCA-
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
17428763 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
17428803 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
17428831 TGAGTCAGCG
Statistics
Matches: 126, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 29 0.23
40 40 0.32
41 57 0.45
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.29
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:17428832 original size:81 final size:81
Alignment explanation
Indices: 17428642--17428830 Score: 258
Period size: 80 Copynumber: 2.3 Consensus size: 81
17428632 TTGGGGTTTA
* * * * *
17428642 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAACCAGTGTCATAATCCGAGCTTGGTCTTGAAGGGT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATCCGAACCTAGTCTTGAAGGGC
* *
17428707 TTTGAGCCAGTGTCAT
66 TTCGAGCCAATGTCAT
*
17428723 AGTCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCA-AA-CCGAACCTAGT-TTCGAAGGG
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATCCGAACCTAGTCTT-GAAGGG
*
17428785 CCTTCGGGCCAATGTCAT
65 -CTTCGAGCCAATGTCAT
17428803 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
17428831 TGAGTCAGCG
Statistics
Matches: 96, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
78 2 0.02
79 14 0.15
80 42 0.44
81 38 0.40
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.29
Consensus pattern (81 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATCCGAACCTAGTCTTGAAGGGC
TTCGAGCCAATGTCAT
Found at i:17439220 original size:40 final size:40
Alignment explanation
Indices: 17439176--17439437 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
17439166 GCTCCTCGTT
* *
17439176 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
17439216 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
17439256 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
17439295 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
17439334 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
17439373 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
17439414 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
17439438 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:17447334 original size:79 final size:80
Alignment explanation
Indices: 17447190--17447407 Score: 225
Period size: 79 Copynumber: 2.7 Consensus size: 80
17447180 AAATCACGTA
* * * * *
17447190 CCTTCGGAATTTAAC-CGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATA
1 CCTTCGGGACTTAACTCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATA
* *
17447253 GTAACTCGCACAATTG
65 GTAACTCACACAAATG
*
17447269 CCTTCGGGACTTAACTCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGAAT-TA
1 CCTTCGGGACTTAACTCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATA
*
17447332 GTATCTCACACAAATG
65 GTAACTCACACAAATG
* * *
17447348 CCTTC-GGATCTT-AGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACT-CGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
17447408 CATCATTCAA
Statistics
Matches: 118, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
78 5 0.04
79 65 0.55
80 48 0.41
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACTCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAG
TAACTCACACAAATG
Found at i:17447407 original size:40 final size:40
Alignment explanation
Indices: 17447204--17447407 Score: 195
Period size: 40 Copynumber: 5.1 Consensus size: 40
17447194 CGGAATTTAA
* * *
17447204 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTAGCACAAATGCCTTCGGGACTTAGC
* * * *
17447244 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
* * *
17447284 TCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
* *
17447323 CCGGA-ATTAGTATCTCA-CACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACT-AGCACAAATGCCTTCGGGA-CTTAGC
* *
17447363 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAGC
17447403 CCGGA
1 CCGGA
17447408 CATCATTCAA
Statistics
Matches: 136, Mismatches: 19, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
38 2 0.01
39 30 0.22
40 93 0.68
41 11 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
Found at i:17449985 original size:40 final size:40
Alignment explanation
Indices: 17449930--17450054 Score: 196
Period size: 40 Copynumber: 3.1 Consensus size: 40
17449920 GGATGATAAT
17449930 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* **
17449970 TCCGGGCTAAGTCCCGAAGACATTTGTGCGAACTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* **
17450010 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
17450050 TCCGG
1 TCCGG
17450055 TTAAAGCCCG
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 76 1.00
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:17452057 original size:22 final size:23
Alignment explanation
Indices: 17452032--17452074 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
17452022 AAAGCCGAGG
17452032 AGCTCAGTAT-GGAG-AAAAGAAA
1 AGCTCA-TATGGGAGCAAAAGAAA
*
17452054 AGCTGATATGGGAGCAAAAGA
1 AGCTCATATGGGAGCAAAAGA
17452075 GTTTCGTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 3 0.17
22 9 0.50
23 6 0.33
ACGTcount: A:0.47, C:0.09, G:0.30, T:0.14
Consensus pattern (23 bp):
AGCTCATATGGGAGCAAAAGAAA
Found at i:17456466 original size:43 final size:43
Alignment explanation
Indices: 17456405--17456490 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
17456395 AAAAAGAAGG
* * *
17456405 GAAAGATCTTGGAGAAAATCGGCTATGGTGGTTCACTAGACTA
1 GAAAGAGCTTGGAGAAAATCAGCTATGGTGGTTCACTAAACTA
17456448 GAAAGAGCTTGGAGAAAATCAGCTATGGTGGTTCACTAAACTA
1 GAAAGAGCTTGGAGAAAATCAGCTATGGTGGTTCACTAAACTA
17456491 AGGTATGTTG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.24
Consensus pattern (43 bp):
GAAAGAGCTTGGAGAAAATCAGCTATGGTGGTTCACTAAACTA
Found at i:17457707 original size:40 final size:39
Alignment explanation
Indices: 17457656--17457820 Score: 206
Period size: 40 Copynumber: 4.1 Consensus size: 39
17457646 GGATGATAAT
*
17457656 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ACTATA
*
17457695 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTATA
* *
17457736 TCCGGGCTAAGTCCCGAAGACATTTGTGCGAACTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTACTATA
* * * *
17457776 TCCGGGCTAAGTCCCGAAGGCAATTGAGCGAGTGGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ACTATA
17457816 TCCGG
1 TCCGG
17457821 TTAAAGCCCG
Statistics
Matches: 111, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
39 2 0.02
40 106 0.95
41 3 0.03
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTACTATA
Found at i:17457789 original size:80 final size:80
Alignment explanation
Indices: 17457656--17457820 Score: 235
Period size: 80 Copynumber: 2.1 Consensus size: 80
17457646 GGATGATAAT
* * * *
17457656 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGACATTTGTGCAACTGACTAATTCCGGGCTAAGTCCCGAAGGCAATT
* *
17457721 GTGCGAGTTACTATA
66 GAGCGAGTGACTATA
17457736 TCCGGGCTAAGTCCCGAAGACATTTGTGCGAACT-ACT-ATATCCGGGCTAAGTCCCGAAGGCAA
1 TCCGGGCTAAGTCCCGAAGACATTTGTGC-AACTGACTAAT-TCCGGGCTAAGTCCCGAAGGCAA
*
17457799 TTGAGCGAGTGGCTATA
64 TTGAGCGAGTGACTATA
17457816 TCCGG
1 TCCGG
17457821 TTAAAGCCCG
Statistics
Matches: 76, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
79 2 0.03
80 72 0.95
81 2 0.03
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGACATTTGTGCAACTGACTAATTCCGGGCTAAGTCCCGAAGGCAATT
GAGCGAGTGACTATA
Found at i:17460902 original size:43 final size:44
Alignment explanation
Indices: 17460790--17460953 Score: 135
Period size: 43 Copynumber: 3.8 Consensus size: 44
17460780 CAATACCAAC
* *
17460790 GTCCCAAACATGGTCTTACATGT-AATCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACACGTAAATCAAATATCGATGCCACT
* * *
17460833 GTCCCAGACAGGGTCTTACACG-AAATCAAATA-CGATTCTGA-T
1 GTCCCAGACATGGTCTTACACGTAAATCAAATATCGATGC-CACT
* * * *
17460875 GTCCTAGACATTGTCTTACACGTAAATCTCAA-ATCAATGCCAAC-
1 GTCCCAGACATGGTCTTACACGTAAATC-AAATATCGATGCC-ACT
** * *
17460919 GTCCCAGATGTGGTCTTACAC-AAAATCACATATCG
1 GTCCCAGACATGGTCTTACACGTAAATCAAATATCG
17460954 GAAATCCAAT
Statistics
Matches: 93, Mismatches: 20, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
42 26 0.28
43 43 0.46
44 24 0.26
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (44 bp):
GTCCCAGACATGGTCTTACACGTAAATCAAATATCGATGCCACT
Found at i:17468121 original size:46 final size:48
Alignment explanation
Indices: 17467971--17468334 Score: 288
Period size: 46 Copynumber: 7.7 Consensus size: 48
17467961 TTACTTGTGT
* * *
17467971 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAC-ATTATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-GATGAGA
* * *
17468017 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGAGA
* * *
17468065 GCTAGTGTAAGA-CATGTCTAGGACAT-GCATCAGCCTCGAGATGTA-A
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATG-AGA
* * * * *
17468111 GCCAGTGTAAGA-CATGCCTGGGACAT-GTATCGG-CTATGCGAT--GT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGAGA
* * * * *
17468155 GTCAGCGTAAGACCATGTCTGGGACATGGCATCGGCATGGATATATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCG--AGATGAGA
* ** * ** *
17468205 GCTAGTGTAAGACCATGTCCAGGACATGGCGTCGGCCTCGATTTCGATA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGAT-GAGA
* * *
17468254 GTCAGTGTAAGACCATGTCTGGGACATGGCATC-GACT--TGATGGATGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGAT-GA-GA
*
17468301 GCCAGTGTAAGACCATGTCTAGGACATGGCATCG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
17468335 ACATTATACC
Statistics
Matches: 250, Mismatches: 52, Indels: 30
0.75 0.16 0.09
Matches are distributed among these distances:
44 10 0.04
45 15 0.06
46 68 0.27
47 61 0.24
48 31 0.12
49 32 0.13
50 33 0.13
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGAGA
Found at i:17468265 original size:99 final size:96
Alignment explanation
Indices: 17468155--17468330 Score: 262
Period size: 99 Copynumber: 1.8 Consensus size: 96
17468145 TATGCGATGT
* * *
17468155 GTCAGCGTAAGACCATGTCTGGGACATGGCATCGGCATGGATATATGAGAGCTAGTGTAAGACCA
1 GTCAGCGTAAGACCATGTCTGGGACATGGCATCGAC-TGGATAGAT--GAGCCAGTGTAAGACCA
17468220 TGTCCAGGACATGGCGTCGGCCTCGATTTCGATA
63 TGTCCAGGACATGGCGTCGGCCTCGATTTCGATA
* * *
17468254 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCCAGTGTAAGACCATGT
1 GTCAGCGTAAGACCATGTCTGGGACATGGCATCGACTGGATAGATGAGCCAGTGTAAGACCATGT
*
17468319 CTAGGACATGGC
66 CCAGGACATGGC
17468331 ATCGACATTA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
96 30 0.43
98 6 0.09
99 34 0.49
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (96 bp):
GTCAGCGTAAGACCATGTCTGGGACATGGCATCGACTGGATAGATGAGCCAGTGTAAGACCATGT
CCAGGACATGGCGTCGGCCTCGATTTCGATA
Found at i:17478715 original size:40 final size:40
Alignment explanation
Indices: 17478570--17478753 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
17478560 TTGAATGATG
* *
17478570 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * * *
17478609 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
17478649 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
17478688 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
17478729 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
17478754 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
39 52 0.42
40 62 0.50
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:17478775 original size:79 final size:79
Alignment explanation
Indices: 17478622--17478785 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
17478612 GGACTAAGAT
* ** *
17478622 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
17478687 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
17478701 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
17478763 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
17478780 CCGAAG
1 CCGAAG
17478786 ATTTTTGGTT
Statistics
Matches: 73, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.04
79 45 0.62
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:17482765 original size:39 final size:39
Alignment explanation
Indices: 17482718--17482807 Score: 135
Period size: 39 Copynumber: 2.3 Consensus size: 39
17482708 TATATGAGAT
*
17482718 TGGAAATATATCCAGACATGAGGTCCGCAGGCTATATGC
1 TGGAAATATATCCAGACATGAGGTCCGCAGGCTACATGC
* * *
17482757 TGGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAATATATCCAGACATGAGGTCCGCAGGCTACATGC
*
17482796 TGGAAAAATATC
1 TGGAAATATATC
17482808 TGGGTTAAAG
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (39 bp):
TGGAAATATATCCAGACATGAGGTCCGCAGGCTACATGC
Found at i:17488079 original size:28 final size:28
Alignment explanation
Indices: 17488017--17488141 Score: 216
Period size: 28 Copynumber: 4.5 Consensus size: 28
17488007 TATTAAGTCT
* *
17488017 GCACACTCAGTGCTATATAATC-AACTA
1 GCACACTTAGTGCTATATAATCAAACTC
17488044 GCACACTTAGTGCTATATAATCAAACTC
1 GCACACTTAGTGCTATATAATCAAACTC
*
17488072 GCACACTTAGTGCTACATAATCAAACTC
1 GCACACTTAGTGCTATATAATCAAACTC
17488100 GCACACTTAGTGCTATATAATCAAACTC
1 GCACACTTAGTGCTATATAATCAAACTC
17488128 GCACACTTAGTGCT
1 GCACACTTAGTGCT
17488142 GTACAATTTA
Statistics
Matches: 93, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
27 21 0.23
28 72 0.77
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.27
Consensus pattern (28 bp):
GCACACTTAGTGCTATATAATCAAACTC
Found at i:17496322 original size:26 final size:27
Alignment explanation
Indices: 17496267--17496437 Score: 195
Period size: 27 Copynumber: 6.4 Consensus size: 27
17496257 TTATTTACTT
17496267 GTAAAATGACTGAAATACCCCTATAAG
1 GTAAAATGACTGAAATACCCCTATAAG
* * *
17496294 GTAAAATGAC-CAAATACCCCCATAGG
1 GTAAAATGACTGAAATACCCCTATAAG
17496320 GTAAAATGA-TCGAAATACCCC-ATAAG
1 GTAAAATGACT-GAAATACCCCTATAAG
* * * *
17496346 GTAAAATAACCGGAATACCCCTATAGG
1 GTAAAATGACTGAAATACCCCTATAAG
* * * *
17496373 GTAAATTGACTGAAATACCCTTGTAGG
1 GTAAAATGACTGAAATACCCCTATAAG
* *
17496400 GTAAAATGACTGTAATACCCCTGTAAG
1 GTAAAATGACTGAAATACCCCTATAAG
17496427 GTAAAATGACT
1 GTAAAATGACT
17496438 ATTTTTTCAT
Statistics
Matches: 121, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
26 43 0.36
27 78 0.64
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22
Consensus pattern (27 bp):
GTAAAATGACTGAAATACCCCTATAAG
Found at i:17496335 original size:53 final size:54
Alignment explanation
Indices: 17496267--17496437 Score: 204
Period size: 53 Copynumber: 3.2 Consensus size: 54
17496257 TTATTTACTT
17496267 GTAAAATGACTGAAATACCCCTATAAGGTAAAATGACC-AAATACCCCCATAGG
1 GTAAAATGACTGAAATACCCCTATAAGGTAAAATGACCGAAATACCCCCATAGG
* * *
17496320 GTAAAATGA-TCGAAATACCCC-ATAAGGTAAAATAACCGGAATACCCCTATAGG
1 GTAAAATGACT-GAAATACCCCTATAAGGTAAAATGACCGAAATACCCCCATAGG
* * * * * * ** *
17496373 GTAAATTGACTGAAATACCCTTGTAGGGTAAAATGACTGTAATACCCCTGTAAG
1 GTAAAATGACTGAAATACCCCTATAAGGTAAAATGACCGAAATACCCCCATAGG
17496427 GTAAAATGACT
1 GTAAAATGACT
17496438 ATTTTTTCAT
Statistics
Matches: 101, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
52 16 0.16
53 49 0.49
54 36 0.36
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22
Consensus pattern (54 bp):
GTAAAATGACTGAAATACCCCTATAAGGTAAAATGACCGAAATACCCCCATAGG
Found at i:17499274 original size:15 final size:15
Alignment explanation
Indices: 17499229--17499286 Score: 53
Period size: 15 Copynumber: 3.9 Consensus size: 15
17499219 GAAAACCAAG
*
17499229 ATAAAGAAATCCAAA
1 ATAAAGAAATCCAGA
*** *
17499244 ACGGAGAAACCCAGA
1 ATAAAGAAATCCAGA
*
17499259 ATAAAGAGATCCAGA
1 ATAAAGAAATCCAGA
*
17499274 ATAGAGAAATCCA
1 ATAAAGAAATCCA
17499287 AGATACGATA
Statistics
Matches: 31, Mismatches: 12, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.55, C:0.17, G:0.17, T:0.10
Consensus pattern (15 bp):
ATAAAGAAATCCAGA
Found at i:17499281 original size:30 final size:29
Alignment explanation
Indices: 17499221--17499291 Score: 79
Period size: 30 Copynumber: 2.4 Consensus size: 29
17499211 GATGGTAAGA
*
17499221 AAACCAAGATAAAGAAATCCAAAACGGAG
1 AAACCAAGATAAAGAAATCCAAAACAGAG
* * * *
17499250 AAACCCAGAATAAAGAGATCCAGAATAGAG
1 AAACCAAG-ATAAAGAAATCCAAAACAGAG
17499280 AAATCCAAGATA
1 AAA-CCAAGATA
17499292 CGATACCGTA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
29 7 0.21
30 23 0.68
31 4 0.12
ACGTcount: A:0.56, C:0.17, G:0.17, T:0.10
Consensus pattern (29 bp):
AAACCAAGATAAAGAAATCCAAAACAGAG
Found at i:17504373 original size:24 final size:24
Alignment explanation
Indices: 17504346--17504400 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
17504336 GCACCTTCGT
*
17504346 ATACATATACACATGAACACATAC
1 ATACATATACACATAAACACATAC
* *
17504370 ATACTTATACACATAAACACATAT
1 ATACATATACACATAAACACATAC
17504394 ATACATA
1 ATACATA
17504401 CCATCCACAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.51, C:0.22, G:0.02, T:0.25
Consensus pattern (24 bp):
ATACATATACACATAAACACATAC
Found at i:17505355 original size:15 final size:15
Alignment explanation
Indices: 17505295--17505376 Score: 85
Period size: 15 Copynumber: 5.5 Consensus size: 15
17505285 AAAAACCAGA
*
17505295 AAAT-CAAGATAGAG
1 AAATCCAAGATAAAG
* *
17505309 AAACCCAAAATAAAG
1 AAATCCAAGATAAAG
*
17505324 AAATCCAACATAAAG
1 AAATCCAAGATAAAG
* *
17505339 AAATCCCAGATAGAG
1 AAATCCAAGATAAAG
* *
17505354 AAGTCCAAGATAAGG
1 AAATCCAAGATAAAG
17505369 AAATCCAA
1 AAATCCAA
17505377 ATTACAATAC
Statistics
Matches: 54, Mismatches: 13, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
14 3 0.06
15 51 0.94
ACGTcount: A:0.56, C:0.17, G:0.15, T:0.12
Consensus pattern (15 bp):
AAATCCAAGATAAAG
Found at i:17507359 original size:28 final size:28
Alignment explanation
Indices: 17507327--17507396 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
17507317 ATAGTAAGTC
17507327 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
17507355 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
17507383 CGCACACTTAGTGC
1 CGCACACTTAGTGC
17507397 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:17515152 original size:28 final size:28
Alignment explanation
Indices: 17515120--17515190 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 28
17515110 TATAGTAAGT
17515120 TCGCACACTTAGTGCT-TA-ATAGTCAAAC
1 TCGCACACTTAGTGCTATACA-A-TCAAAC
*
17515148 TCGCACACTTAGTGCTATACAATTAAAC
1 TCGCACACTTAGTGCTATACAATCAAAC
17515176 TCGCACACTTAGTGC
1 TCGCACACTTAGTGC
17515191 CAATCTCATT
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 36 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (28 bp):
TCGCACACTTAGTGCTATACAATCAAAC
Found at i:17538950 original size:27 final size:27
Alignment explanation
Indices: 17538920--17539232 Score: 269
Period size: 27 Copynumber: 11.5 Consensus size: 27
17538910 AAATTGTACA
*
17538920 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATTGGACTATGTT
* *
17538947 GCACTAAGTGTGCGAAATGGA-TATGAT
1 GCACTAAGTGTGCG-ATTGGACTATGTT
* **
17538974 GCACTAAGTGTGCGAATT-GACCATGCG
1 GCACTAAGTGTGCG-ATTGGACTATGTT
* *
17539001 GCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCGA-TTGGACTATGTT
*
17539029 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATTGGACTATGTT
* *
17539056 GCACTAAGTGTGCGAACTGGA-TATGAT
1 GCACTAAGTGTGCG-ATTGGACTATGTT
* *
17539083 GCACTAAGTGTGCGAAATGGA-TATGAT
1 GCACTAAGTGTGCG-ATTGGACTATGTT
* * **
17539110 GCACTACGTGTGCGAATT-GACCATGCG
1 GCACTAAGTGTGCG-ATTGGACTATGTT
* *
17539137 GCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCGA-TTGGACTATGTT
* * * *
17539165 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGATTGGACTATGTT
* * *
17539192 GCACTAAGTGTGCGAGTT-GATTATATA
1 GCACTAAGTGTGCGA-TTGGACTATGTT
*
17539219 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
17539233 GGCTCAATAA
Statistics
Matches: 243, Mismatches: 34, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
26 6 0.02
27 183 0.75
28 54 0.22
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.27
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTGGACTATGTT
Found at i:17539164 original size:136 final size:137
Alignment explanation
Indices: 17538919--17539206 Score: 490
Period size: 136 Copynumber: 2.1 Consensus size: 137
17538909 TAAATTGTAC
* *
17538919 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAAGT
1 AGCACTAAGTGTGCGAACTCGACTATGATGCACTAAGTGTGCGAAATGGATATGATGCACTAAGT
17538983 GTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTCG
66 GTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTCG
*
17539048 ACTATGT
131 ACTACGT
* * *
17539055 TGCACTAAGTGTGCGAACTGGA-TATGATGCACTAAGTGTGCGAAATGGATATGATGCACTACGT
1 AGCACTAAGTGTGCGAACTCGACTATGATGCACTAAGTGTGCGAAATGGATATGATGCACTAAGT
*
17539119 GTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTG
66 GTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTCG
*
17539184 ATTACGT
131 ACTACGT
17539191 AGCACTAAGTGTGCGA
1 AGCACTAAGTGTGCGA
17539207 GTTGATTATA
Statistics
Matches: 142, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
136 138 0.97
137 4 0.03
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (137 bp):
AGCACTAAGTGTGCGAACTCGACTATGATGCACTAAGTGTGCGAAATGGATATGATGCACTAAGT
GTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTCG
ACTACGT
Found at i:17539206 original size:109 final size:110
Alignment explanation
Indices: 17538920--17539179 Score: 382
Period size: 109 Copynumber: 2.4 Consensus size: 110
17538910 AAATTGTACA
17538920 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAAGTGT
* * * *
17538985 GCG-AATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGTG
66 GCGAAATGGACCATGAGGCACTAAGTGTGCGAGATGGACCATGCG
*
17539029 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAACTGGATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAAGTGT
* * * *
17539094 GCGAAATGGA-TATGATGCACTACGTGTGCGA-ATTGACCATGCG
66 GCGAAATGGACCATGAGGCACTAAGTGTGCGAGATGGACCATGCG
* * *
17539137 GCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA-TTCGACTATGTTGCACTAAGTGTGCGA
17539180 TTTGATTACG
Statistics
Matches: 137, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
108 24 0.18
109 108 0.79
110 5 0.04
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (110 bp):
GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAAGTGT
GCGAAATGGACCATGAGGCACTAAGTGTGCGAGATGGACCATGCG
Found at i:17539223 original size:109 final size:106
Alignment explanation
Indices: 17538920--17539232 Score: 362
Period size: 109 Copynumber: 2.9 Consensus size: 106
17538910 AAATTGTACA
17538920 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAAGTGT
* ** * *
17538985 GCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGTG
66 GCGAATTGA-TAT-ATGCACT-AGTGTGCGAGATGGACCATGCG
*
17539029 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAACTGGATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAAGTGT
* *
17539094 GCGAAATGGATATGATGCACTACGTGTGCGA-ATTGACCATGCG
66 GCG-AATTGATAT-ATGCACTA-GTGTGCGAGATGGACCATGCG
* * * * * *
17539137 GCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCG-ATTTGATTACG-TAGCACTAAG
1 GCACTAAGTGTGCGA-TTCGACTATGTTGCACTAAGTGTGCGAAATGGA-TATGAT-GCACTAAG
*
17539200 TGTGCGAGTTGATTATATAGCACTGAGTGTGCG
63 TGTGCGAATTGA-TATAT-GCACT-AGTGTGCG
17539233 GGCTCAATAA
Statistics
Matches: 180, Mismatches: 16, Indels: 16
0.85 0.08 0.08
Matches are distributed among these distances:
108 36 0.20
109 138 0.77
110 6 0.03
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.27
Consensus pattern (106 bp):
GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAAGTGT
GCGAATTGATATATGCACTAGTGTGCGAGATGGACCATGCG
Found at i:17539905 original size:257 final size:257
Alignment explanation
Indices: 17539449--17539961 Score: 963
Period size: 257 Copynumber: 2.0 Consensus size: 257
17539439 GCCGTATAGT
17539449 CGTTTGGTTGTAACAAAAATAAATCGATTTATGAAATTGCTTCAATGTCCTATTGATGAGTATAT
1 CGTTTGGTTGTAACAAAAATAAATCGATTTATGAAATTGCTTCAATGTCCTATTGATGAGTATAT
* *
17539514 GGAATGTGAATGCATGAATTGATATGAAATTGAATTGATAAGTTGGAGGAACTATGGTATGGTTC
66 AGAATGTGAATGCATGAATTGATATGAAATTGAATCGATAAGTTGGAGGAACTATGGTATGGTTC
* *
17539579 GGTATGGATGGAGTAAATTGTCTCGTTCTATTTTGTTTCCTCTTGTGATAATGTTGTTGATAGAT
131 GGTATGGATGGAGTAAATTGTCTCGTTCCATTTTGTTTCCTCTTGTGATAATGTTATTGATAGAT
17539644 GGTAGTGCATTGCTTATGACTTACTGAGTTATAAACTCACTCGATGTTTCCTTGTCACCCAC
196 GGTAGTGCATTGCTTATGACTTACTGAGTTATAAACTCACTCGATGTTTCCTTGTCACCCAC
17539706 CGTTTGGTTGTAACAAAAATAAATCGATTTATGAAATTGCTTCAATGTCCTATTGATGAGTATAT
1 CGTTTGGTTGTAACAAAAATAAATCGATTTATGAAATTGCTTCAATGTCCTATTGATGAGTATAT
*
17539771 AGAATGTGAATGCATGAATTGATATGAAATTGAATCGATAGGTTGGAGGAACTATGGTATGGTTC
66 AGAATGTGAATGCATGAATTGATATGAAATTGAATCGATAAGTTGGAGGAACTATGGTATGGTTC
*
17539836 GGTATGGATGGAGTAAATTGTCTCGTTCCATTTTGTTTCCTCTTGTGATAATGTTATTGATGGAT
131 GGTATGGATGGAGTAAATTGTCTCGTTCCATTTTGTTTCCTCTTGTGATAATGTTATTGATAGAT
*
17539901 GGTAGTGCATTGCTTATGACTTACTGAGTTATAAACTCACTCGGTGTTTCCTTGTCACCCA
196 GGTAGTGCATTGCTTATGACTTACTGAGTTATAAACTCACTCGATGTTTCCTTGTCACCCA
17539962 TTATAGGTTG
Statistics
Matches: 249, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
257 249 1.00
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.38
Consensus pattern (257 bp):
CGTTTGGTTGTAACAAAAATAAATCGATTTATGAAATTGCTTCAATGTCCTATTGATGAGTATAT
AGAATGTGAATGCATGAATTGATATGAAATTGAATCGATAAGTTGGAGGAACTATGGTATGGTTC
GGTATGGATGGAGTAAATTGTCTCGTTCCATTTTGTTTCCTCTTGTGATAATGTTATTGATAGAT
GGTAGTGCATTGCTTATGACTTACTGAGTTATAAACTCACTCGATGTTTCCTTGTCACCCAC
Found at i:17543805 original size:29 final size:30
Alignment explanation
Indices: 17543760--17543863 Score: 108
Period size: 29 Copynumber: 3.6 Consensus size: 30
17543750 ATATAGCCTA
* *
17543760 CTAGGCCCAA-TCTTATTCAAATGGCCCAT
1 CTAGGCCCAATTCATATTCATATGGCCCAT
* * *
17543789 CTA-GCCCAGTTCATATTCTTATGACCCA-
1 CTAGGCCCAATTCATATTCATATGGCCCAT
**
17543817 CTAGGCCCAATTCACCTTCATATGGCCCAT
1 CTAGGCCCAATTCATATTCATATGGCCCAT
*
17543847 -TAGGCCCAAATCATATT
1 CTAGGCCCAATTCATATT
17543864 ATACTCATGC
Statistics
Matches: 59, Mismatches: 13, Indels: 6
0.76 0.17 0.08
Matches are distributed among these distances:
28 8 0.14
29 51 0.86
ACGTcount: A:0.27, C:0.32, G:0.12, T:0.29
Consensus pattern (30 bp):
CTAGGCCCAATTCATATTCATATGGCCCAT
Found at i:17543969 original size:19 final size:18
Alignment explanation
Indices: 17543936--17543972 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
17543926 TGGGCCCAAC
17543936 AGCCCATCAGGCCCATTT
1 AGCCCATCAGGCCCATTT
*
17543954 AGCCCATTCCGGCCCATTT
1 AGCCCA-TCAGGCCCATTT
17543973 GGCCAACTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.19, C:0.41, G:0.16, T:0.24
Consensus pattern (18 bp):
AGCCCATCAGGCCCATTT
Found at i:17548782 original size:19 final size:20
Alignment explanation
Indices: 17548758--17548795 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
17548748 AGTACCACCA
17548758 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
17548777 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
17548796 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:17549036 original size:46 final size:46
Alignment explanation
Indices: 17548952--17549207 Score: 277
Period size: 46 Copynumber: 5.5 Consensus size: 46
17548942 TCGGTCTCAC
* * * *
17548952 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAAT
* *
17548998 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAAT
1 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAAT
* * * * *
17549044 GAACTCAGACTCAACTCAACGAGTTTGGATGCCTAGTT-ACAT-C-T-CAC
1 GAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCATAAAT
* * * *
17549091 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAAT
* *
17549137 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAAT
1 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAAT
*
17549183 GAACTCAGACTCAACTCAACGAGTT
1 GAACTCGGACTCAACTCAACGAGTT
17549208 TGGATGCCTA
Statistics
Matches: 171, Mismatches: 30, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
42 2 0.01
43 3 0.02
44 2 0.01
45 1 0.01
46 126 0.74
47 27 0.16
48 2 0.01
49 2 0.01
50 3 0.02
51 3 0.02
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAAT
Found at i:17549104 original size:47 final size:48
Alignment explanation
Indices: 17548950--17549261 Score: 246
Period size: 46 Copynumber: 6.7 Consensus size: 48
17548940 CATCGGTCTC
* *
17548950 ACGAACTCGGACTCAACTCAACGAGTTCGGA---CATTTGCATCCATA
1 ACGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCATA
* * * *
17548995 AGTGAACTCGGACTCAACTCAACAAGCTCGG--G-C-GTTCGCATCCATAA
1 A-CGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTT-ACATCCAT-A
* * * *
17549042 ATGAACTCAGACTCAACTCAACGAGTTTGGATGCCTAGTTACAT-C-TC
1 ACGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACATCCATA
* *
17549089 ACGAACTCGGACTCAACTCAACGAGTTCGGA---CATTTGCATCCATA
1 ACGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCATA
* * * *
17549134 AGTGAACTCGGACTCAACTCAACAAGCTCGG--G-C-GTTCGCATCCATAA
1 A-CGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTT-ACATCCAT-A
* * * *
17549181 ATGAACTCAGACTCAACTCAACGAGTTTGGATGCCTAGTTACAT-C-TC
1 ACGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACATCCATA
17549228 ACGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 ACGAACTCGGACTCAACTCAACGAGTTCGGATGC
17549262 TCAACCATCC
Statistics
Matches: 218, Mismatches: 29, Indels: 38
0.76 0.10 0.13
Matches are distributed among these distances:
43 6 0.03
44 2 0.01
45 7 0.03
46 120 0.55
47 63 0.29
48 4 0.02
49 4 0.02
50 6 0.03
51 6 0.03
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (48 bp):
ACGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCATA
Found at i:17549196 original size:139 final size:139
Alignment explanation
Indices: 17548946--17549258 Score: 626
Period size: 139 Copynumber: 2.3 Consensus size: 139
17548936 AACACATCGG
17548946 TCTCACGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCA
1 TCTCACGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCA
17549011 ACTCAACAAGCTCGGGCGTTCGCATCCATAAATGAACTCAGACTCAACTCAACGAGTTTGGATGC
66 ACTCAACAAGCTCGGGCGTTCGCATCCATAAATGAACTCAGACTCAACTCAACGAGTTTGGATGC
17549076 CTAGTTACA
131 CTAGTTACA
17549085 TCTCACGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCA
1 TCTCACGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCA
17549150 ACTCAACAAGCTCGGGCGTTCGCATCCATAAATGAACTCAGACTCAACTCAACGAGTTTGGATGC
66 ACTCAACAAGCTCGGGCGTTCGCATCCATAAATGAACTCAGACTCAACTCAACGAGTTTGGATGC
17549215 CTAGTTACA
131 CTAGTTACA
17549224 TCTCACGAACTCGGACTCAACTCAACGAGTTCGGA
1 TCTCACGAACTCGGACTCAACTCAACGAGTTCGGA
17549259 TGCTCAACCA
Statistics
Matches: 174, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
139 174 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (139 bp):
TCTCACGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCA
ACTCAACAAGCTCGGGCGTTCGCATCCATAAATGAACTCAGACTCAACTCAACGAGTTTGGATGC
CTAGTTACA
Found at i:17549715 original size:30 final size:30
Alignment explanation
Indices: 17549681--17549740 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
17549671 ATTTAATACG
17549681 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
17549711 AACTTTTTCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
17549741 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.03, T:0.38
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:17549928 original size:82 final size:82
Alignment explanation
Indices: 17549798--17549962 Score: 312
Period size: 82 Copynumber: 2.0 Consensus size: 82
17549788 CTGATCACTT
*
17549798 TTCCCTTCTATGGTAACATCAAATTCTCTCTCTAACATATACTTGTGACTATTAGGTATTTTTGC
1 TTCCCTTCTATGGCAACATCAAATTCTCTCTCTAACATATACTTGTGACTATTAGGTATTTTTGC
17549863 CCATTAAGCCCTTTTAC
66 CCATTAAGCCCTTTTAC
17549880 TTCCCTTCTATGGCAACATCAAATTCTCTCTCTAACATATACTTGTGACTATTAGGTATTTTTGC
1 TTCCCTTCTATGGCAACATCAAATTCTCTCTCTAACATATACTTGTGACTATTAGGTATTTTTGC
*
17549945 CGATTAAGCCCTTTTAC
66 CCATTAAGCCCTTTTAC
17549962 T
1 T
17549963 CGTTTTCACT
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 81 1.00
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.41
Consensus pattern (82 bp):
TTCCCTTCTATGGCAACATCAAATTCTCTCTCTAACATATACTTGTGACTATTAGGTATTTTTGC
CCATTAAGCCCTTTTAC
Found at i:17553767 original size:36 final size:36
Alignment explanation
Indices: 17553720--17553789 Score: 140
Period size: 36 Copynumber: 1.9 Consensus size: 36
17553710 CGAAATAAGT
17553720 TCTGAATTTCTTGGAACACACAAACGACTGCTGAAC
1 TCTGAATTTCTTGGAACACACAAACGACTGCTGAAC
17553756 TCTGAATTTCTTGGAACACACAAACGACTGCTGA
1 TCTGAATTTCTTGGAACACACAAACGACTGCTGA
17553790 CCCTCAAACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (36 bp):
TCTGAATTTCTTGGAACACACAAACGACTGCTGAAC
Found at i:17561703 original size:27 final size:27
Alignment explanation
Indices: 17561649--17561702 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 27
17561639 GCAATTAATT
17561649 AATT-TTTAAAAATTAAAAATTATAAA
1 AATTATTTAAAAATTAAAAATTATAAA
17561675 AATTATTTAAAAATT-AAAATTATAAA
1 AATTATTTAAAAATTAAAAATTATAAA
17561701 AA
1 AA
17561703 AATATTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 17 0.63
27 10 0.37
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (27 bp):
AATTATTTAAAAATTAAAAATTATAAA
Found at i:17561708 original size:27 final size:27
Alignment explanation
Indices: 17561653--17561709 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
17561643 TTAATTAATT
*
17561653 TTTAAAAATTAAAAATTATAAAAATTA
1 TTTAAAAATTAAAAATTATAAAAAATA
17561680 TTTAAAAATT-AAAATTATAAAAAAATA
1 TTTAAAAATTAAAAATTAT-AAAAAATA
17561707 TTT
1 TTT
17561710 TTTAATATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (27 bp):
TTTAAAAATTAAAAATTATAAAAAATA
Found at i:17562069 original size:9 final size:8
Alignment explanation
Indices: 17562054--17562093 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
17562044 AACAGCAATA
17562054 TTAAAAAT
1 TTAAAAAT
17562062 TCTAAAAAT
1 T-TAAAAAT
*
17562071 TTTAAAAT
1 TTAAAAAT
*
17562079 TTAAAATT
1 TTAAAAAT
17562087 TTAAAAA
1 TTAAAAA
17562094 ATAATAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
8 19 0.70
9 8 0.30
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (8 bp):
TTAAAAAT
Found at i:17567490 original size:24 final size:24
Alignment explanation
Indices: 17567463--17567522 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
17567453 TCTCCCAAGA
* *
17567463 TTAGGATTTTTAATATTTTTAGGT
1 TTAGGATTTTTAATATTTCTACGT
*
17567487 TTAGGGTTTTTAATATTTCTACGT
1 TTAGGATTTTTAATATTTCTACGT
*
17567511 TTAAGGTTTTTT
1 TT-AGGATTTTT
17567523 TTAAATTAGG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
24 23 0.74
25 8 0.26
ACGTcount: A:0.22, C:0.03, G:0.17, T:0.58
Consensus pattern (24 bp):
TTAGGATTTTTAATATTTCTACGT
Found at i:17568645 original size:17 final size:16
Alignment explanation
Indices: 17568611--17568653 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
17568601 CATCAACCAA
*
17568611 AAATTTTTAGCAATAG
1 AAATTTTTAACAATAG
*
17568627 AAATTTTTAACACTGAG
1 AAATTTTTAACAAT-AG
17568644 AAATGTTTTA
1 AAAT-TTTTA
17568654 TAAATGAGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 12 0.52
17 6 0.26
18 5 0.22
ACGTcount: A:0.42, C:0.07, G:0.12, T:0.40
Consensus pattern (16 bp):
AAATTTTTAACAATAG
Found at i:17573836 original size:56 final size:56
Alignment explanation
Indices: 17573745--17573854 Score: 175
Period size: 56 Copynumber: 2.0 Consensus size: 56
17573735 GATTAGATGA
* *
17573745 TATGCTTGACGAGCTAAGTGGCGCGAGTTTATTTTCAAAAATCGACCTTAAGAGCG
1 TATGCTTGACGAGCTAAGTGGCGCAAGTCTATTTTCAAAAATCGACCTTAAGAGCG
* * *
17573801 TATGCTTGACGAGCTAAGTGGCGCAAGTCTGTTTTCAAAAATTGATCTTAAGAG
1 TATGCTTGACGAGCTAAGTGGCGCAAGTCTATTTTCAAAAATCGACCTTAAGAG
17573855 TGGTTATCAC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 49 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (56 bp):
TATGCTTGACGAGCTAAGTGGCGCAAGTCTATTTTCAAAAATCGACCTTAAGAGCG
Found at i:17575512 original size:86 final size:86
Alignment explanation
Indices: 17575367--17575537 Score: 324
Period size: 86 Copynumber: 2.0 Consensus size: 86
17575357 ATTTTTCAAA
17575367 GAGGTGGTCAGGTTGCATGGCATGCCTAGAACGATCGTGTCCAACCGAGACGCAAAATTCCTTAG
1 GAGGTGGTCAGGTTGCATGGCATGCCTAGAACGATCGTGTCCAACCGAGACGCAAAATTCCTTAG
17575432 CCATTTTTGGAGGACACTATG
66 CCATTTTTGGAGGACACTATG
* *
17575453 GAGGTGGTCAGGTTGCATGGCATGCCTAGAACGATCGTGTCCGACCGAGACGTAAAATTCCTTAG
1 GAGGTGGTCAGGTTGCATGGCATGCCTAGAACGATCGTGTCCAACCGAGACGCAAAATTCCTTAG
17575518 CCATTTTTGGAGGACACTAT
66 CCATTTTTGGAGGACACTAT
17575538 AGGGGCGTCT
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
86 83 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (86 bp):
GAGGTGGTCAGGTTGCATGGCATGCCTAGAACGATCGTGTCCAACCGAGACGCAAAATTCCTTAG
CCATTTTTGGAGGACACTATG
Found at i:17577533 original size:50 final size:50
Alignment explanation
Indices: 17577474--17577575 Score: 186
Period size: 50 Copynumber: 2.0 Consensus size: 50
17577464 TTCCTTTTCT
*
17577474 TTGAAACCTTTAAGCCCGGGTCCTTATTTGTTAATAAGGGTTCGTACTTG
1 TTGAAACCTTTAAGCCCGGGTCCTTATTTGTTAATAAGGATTCGTACTTG
*
17577524 TTGAAACCTTTAAGCCCGGGTCTTTATTTGTTAATAAGGATTCGTACTTG
1 TTGAAACCTTTAAGCCCGGGTCCTTATTTGTTAATAAGGATTCGTACTTG
17577574 TT
1 TT
17577576 TCATTGGAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.40
Consensus pattern (50 bp):
TTGAAACCTTTAAGCCCGGGTCCTTATTTGTTAATAAGGATTCGTACTTG
Found at i:17579263 original size:50 final size:50
Alignment explanation
Indices: 17579188--17579287 Score: 182
Period size: 50 Copynumber: 2.0 Consensus size: 50
17579178 GTCCATATGG
*
17579188 CCATAAAGGTTGAAAAACAATTAAAGAGAAAGGGTACGTTCCGTTCTTTC
1 CCATAAAGGTTGAAAAACAATTAAAGAGAAAAGGTACGTTCCGTTCTTTC
*
17579238 CCATAAAGGTTGAAAAACAATTAAAGAGAAAAGGTATGTTCCGTTCTTTC
1 CCATAAAGGTTGAAAAACAATTAAAGAGAAAAGGTACGTTCCGTTCTTTC
17579288 TCTAATACTT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (50 bp):
CCATAAAGGTTGAAAAACAATTAAAGAGAAAAGGTACGTTCCGTTCTTTC
Found at i:17580783 original size:48 final size:48
Alignment explanation
Indices: 17580711--17580807 Score: 131
Period size: 48 Copynumber: 2.0 Consensus size: 48
17580701 ATGCTTGACG
* *
17580711 AGCTAAGTGGCGCGAGTTTATTTTCAAAAATCGACCTTAAGAGCGGTT
1 AGCTAAGTGGCGCAAGTCTATTTTCAAAAATCGACCTTAAGAGCGGTT
* * * * *
17580759 AGCTAAGTGTCGCAAGTCTGTTTTCAAAAATTGATCTTAAGAGTGGTT
1 AGCTAAGTGGCGCAAGTCTATTTTCAAAAATCGACCTTAAGAGCGGTT
17580807 A
1 A
17580808 TCACCAAATA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (48 bp):
AGCTAAGTGGCGCAAGTCTATTTTCAAAAATCGACCTTAAGAGCGGTT
Found at i:17585822 original size:16 final size:17
Alignment explanation
Indices: 17585801--17585833 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
17585791 CACATTGAAG
17585801 TGTTTT-TTGAAAACCA
1 TGTTTTATTGAAAACCA
17585817 TGTTTTCATTGAAAACC
1 TGTTTT-ATTGAAAACC
17585834 CTTCTTGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (17 bp):
TGTTTTATTGAAAACCA
Found at i:17586744 original size:60 final size:59
Alignment explanation
Indices: 17586617--17586755 Score: 165
Period size: 60 Copynumber: 2.3 Consensus size: 59
17586607 TTTAGTGTTA
* * *
17586617 ACTGGGCCTTAGCCCAGATCAATATTAATCTGGGCCATAGCCCCTTACAGTAACAGAGTAT
1 ACTGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGT-ACAGAGTAT
*
17586678 ACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCCTATTACAAGT-C-GAGATAT
1 ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTAC-AGTACAGAG-TAT
* *
17586738 ATTGGGCCTTGCCCATAT
1 ACTGGGCCTAGCCCATAT
17586756 TGACACAGTT
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
59 3 0.04
60 51 0.74
61 12 0.17
62 3 0.04
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (59 bp):
ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGTACAGAGTAT
Found at i:17586773 original size:20 final size:19
Alignment explanation
Indices: 17586748--17586803 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
17586738 ATTGGGCCTT
*
17586748 GCCCATATTGACACAGTTGG
1 GCCCATATTAACACAGTT-G
* *
17586768 GCCCATTTTAATACAGTTG
1 GCCCATATTAACACAGTTG
* *
17586787 GCCCATAATAAAACAGT
1 GCCCATATTAACACAGT
17586804 CTCATATGAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (19 bp):
GCCCATATTAACACAGTTG
Found at i:17589945 original size:30 final size:30
Alignment explanation
Indices: 17589911--17589971 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
17589901 TCCTTAACTC
17589911 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
17589941 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
17589971 A
1 A
17589972 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:17595065 original size:43 final size:43
Alignment explanation
Indices: 17594999--17595084 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 43
17594989 AAATCATACA
* *
17594999 ATGCCAACGTCCCAGACATGGTCTTACAT-GTAACCACATATCG
1 ATGCCAACGTCCCAGACAGGGTCTTAC-TCGTAAACACATATCG
17595042 ATGCC-ACTGTCCCAGACAGGGTCTTACTCGTAAACACATATCG
1 ATGCCAAC-GTCCCAGACAGGGTCTTACTCGTAAACACATATCG
17595085 GAATCACATA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
42 3 0.08
43 36 0.92
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACTCGTAAACACATATCG
Found at i:17596507 original size:43 final size:41
Alignment explanation
Indices: 17596452--17596546 Score: 99
Period size: 43 Copynumber: 2.3 Consensus size: 41
17596442 GTTTAAATCG
17596452 AAGCAATCATACT-GACACACA-TGGCA-CATCATCGAATAAACCA
1 AAGCAATCATACTAG-CACACAGT-GCATCATCA--G-ATAAACCA
17596495 AAGCAAAT-ATACTAGCACACAGTGCATCATCAGATAAACCA
1 AAGC-AATCATACTAGCACACAGTGCATCATCAGATAAACCA
*
17596536 AAGTAATCATA
1 AAGCAATCATA
17596547 TTGGAAAATG
Statistics
Matches: 46, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
40 3 0.07
41 14 0.30
42 1 0.02
43 18 0.39
44 10 0.22
ACGTcount: A:0.46, C:0.24, G:0.12, T:0.18
Consensus pattern (41 bp):
AAGCAATCATACTAGCACACAGTGCATCATCAGATAAACCA
Found at i:17597163 original size:27 final size:27
Alignment explanation
Indices: 17597110--17597163 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
17597100 ATATATAAAT
* * *
17597110 ATTATAAAATAATTATTTTGTACTTAA
1 ATTATAAAATAATGAATTTGTAATTAA
17597137 ATTATTAAAATAATGAATTT-TAATTAA
1 ATTA-TAAAATAATGAATTTGTAATTAA
17597164 TTTTATAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (27 bp):
ATTATAAAATAATGAATTTGTAATTAA
Found at i:17597165 original size:10 final size:10
Alignment explanation
Indices: 17597147--17597198 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
17597137 ATTATTAAAA
*
17597147 TAATGAATTT
1 TAATTAATTT
17597157 TAATTAATTTT
1 TAATTAA-TTT
17597168 ATAATTAATTT
1 -TAATTAATTT
*
17597179 TGATTAATTT
1 TAATTAATTT
*
17597189 TGATT-ATTT
1 TAATTAATTT
17597198 T
1 T
17597199 CGATAGATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
9 5 0.13
10 20 0.53
11 6 0.16
12 7 0.18
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.60
Consensus pattern (10 bp):
TAATTAATTT
Found at i:17597171 original size:22 final size:22
Alignment explanation
Indices: 17597146--17597189 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
17597136 AATTATTAAA
17597146 ATAATGAATTTTAATTAATTTT
1 ATAATGAATTTTAATTAATTTT
* *
17597168 ATAATTAATTTTGATTAATTTT
1 ATAATGAATTTTAATTAATTTT
17597190 GATTATTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (22 bp):
ATAATGAATTTTAATTAATTTT
Found at i:17600667 original size:40 final size:40
Alignment explanation
Indices: 17600592--17600668 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
17600582 TATTAGTGGC
* * *
17600592 GCTTTTTAAAAAGTGCCATTATAGATCGAGAATTAGCGAT
1 GCTTTTTAAAAAATGCCACTATAGATCGACAATTAGCGAT
* * *
17600632 GCTTTTTAAAAAATGTCACTATAGGTCGACCATTAGC
1 GCTTTTTAAAAAATGCCACTATAGATCGACAATTAGC
17600669 AGCACTTTCT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (40 bp):
GCTTTTTAAAAAATGCCACTATAGATCGACAATTAGCGAT
Found at i:17600804 original size:40 final size:40
Alignment explanation
Indices: 17600746--17600841 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 40
17600736 TTAGCGGAGT
*
17600746 TTTTTGAAAAACG-TGCTATAGATCGAGCATTAGCGACAC
1 TTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGACAC
* * * ***
17600785 TTTTTGAAAAATGCCGCTATAGATCGAGCTTTAGTGGTGC
1 TTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGACAC
17600825 TTTTTGAAAAACGCCGC
1 TTTTTGAAAAACGCCGC
17600842 AAAAAACATT
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
39 12 0.25
40 36 0.75
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (40 bp):
TTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGACAC
Found at i:17600845 original size:151 final size:153
Alignment explanation
Indices: 17600459--17600847 Score: 405
Period size: 151 Copynumber: 2.5 Consensus size: 153
17600449 AAACACTGCC
* * * * * *
17600459 ATAGATAGAGCATTAGAGTCGCTTTTCGACAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTT
1 ATAGATCGAGCATTAGCGACGCTTTTTGAAAAATGCCGCTATAGATCGAGCATTAGCGGCGCTTT
* * *
17600524 CTAAAAATGCCGC-AAAAAATTAAGCACAACACTGCCATTTTATGTTGAGATTTGGTGGTATTAG
66 CTAAAAACGCCGCAAAAAAATTAAGCACAACACTGCCATTTTATGTTGAGATTTAGTGGCATTAG
* *
17600588 TGGCGCTTTTTAAAAAGTGCCATT
131 CGGAGCTTTTTAAAAAGTGCCA-T
* * * * * * * * *
17600612 ATAGATCGAGAATTAGCGATGCTTTTTAAAAAATGTCACTATAGGTCGACCATTAGCAGCACTTT
1 ATAGATCGAGCATTAGCGACGCTTTTTGAAAAATGCCGCTATAGATCGAGCATTAGCGGCGCTTT
*** *
17600677 CTAAAGAACAGCC-CAAAAAAATTAAGCAC-A-A-TGTTGTTTTATGTTGAGCTTTAGTGGCATT
66 CTAAA-AAC-GCCGCAAAAAAATTAAGCACAACACTGCCATTTTATGTTGAGATTTAGTGGCATT
*
17600738 AGCGGAGTTTTTTGAAAAACGTG-C-T
129 AGCGGAGCTTTTT-AAAAA-GTGCCAT
* * * *
17600763 ATAGATCGAGCATTAGCGACACTTTTTGAAAAATGCCGCTATAGATCGAGCTTTAGTGGTGCTTT
1 ATAGATCGAGCATTAGCGACGCTTTTTGAAAAATGCCGCTATAGATCGAGCATTAGCGGCGCTTT
*
17600828 TTGAAAAACGCCGCAAAAAA
66 CT-AAAAACGCCGCAAAAAA
17600848 CATTTTATCT
Statistics
Matches: 190, Mismatches: 39, Indels: 16
0.78 0.16 0.07
Matches are distributed among these distances:
150 3 0.02
151 64 0.34
152 37 0.19
153 62 0.33
154 7 0.04
155 17 0.09
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.30
Consensus pattern (153 bp):
ATAGATCGAGCATTAGCGACGCTTTTTGAAAAATGCCGCTATAGATCGAGCATTAGCGGCGCTTT
CTAAAAACGCCGCAAAAAAATTAAGCACAACACTGCCATTTTATGTTGAGATTTAGTGGCATTAG
CGGAGCTTTTTAAAAAGTGCCAT
Found at i:17601158 original size:7 final size:7
Alignment explanation
Indices: 17601146--17601184 Score: 69
Period size: 7 Copynumber: 5.6 Consensus size: 7
17601136 ATCATTATAA
17601146 TTTAGGG
1 TTTAGGG
17601153 TTTAGGG
1 TTTAGGG
17601160 TTTAGGG
1 TTTAGGG
17601167 TTTAGGG
1 TTTAGGG
*
17601174 TTTAAGG
1 TTTAGGG
17601181 TTTA
1 TTTA
17601185 TAAGTTACTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.18, C:0.00, G:0.36, T:0.46
Consensus pattern (7 bp):
TTTAGGG
Found at i:17601246 original size:7 final size:7
Alignment explanation
Indices: 17601234--17601325 Score: 51
Period size: 7 Copynumber: 12.9 Consensus size: 7
17601224 TAAGGGTTGG
17601234 GGTTTAA
1 GGTTTAA
17601241 GGTTTAA
1 GGTTTAA
17601248 GGTTTAA
1 GGTTTAA
* *
17601255 GTTTTAGG
1 GGTTTA-A
*
17601263 GGTTTAG
1 GGTTTAA
*
17601270 GGTTTAT
1 GGTTTAA
*
17601277 GATTTATA
1 GGTTTA-A
* *
17601285 -TTTTAT
1 GGTTTAA
* *
17601291 GATTTAG
1 GGTTTAA
17601298 GGTTTAA
1 GGTTTAA
* *
17601305 GGGTTAGG
1 GGTTTA-A
17601313 GGTTTAA
1 GGTTTAA
17601320 GGTTTA
1 GGTTTA
17601326 GATTAGTTAG
Statistics
Matches: 65, Mismatches: 16, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
7 55 0.85
8 10 0.15
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (7 bp):
GGTTTAA
Found at i:17601282 original size:22 final size:22
Alignment explanation
Indices: 17601241--17601282 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
17601231 TGGGGTTTAA
*
17601241 GGTTTAAGGTTTAAGTTTTAGG
1 GGTTTAAGGTTTAAGATTTAGG
* *
17601263 GGTTTAGGGTTTATGATTTA
1 GGTTTAAGGTTTAAGATTTA
17601283 TATTTTATGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (22 bp):
GGTTTAAGGTTTAAGATTTAGG
Found at i:17601282 original size:29 final size:29
Alignment explanation
Indices: 17601232--17601305 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
17601222 TTTAAGGGTT
* *
17601232 GGGGTTTAAGGTTTAAGGTTTA-AGTTTTA
1 GGGGTTTAGGGTTTAAGATTTATA-TTTTA
*
17601261 GGGGTTTAGGGTTTATGATTTATATTTTA
1 GGGGTTTAGGGTTTAAGATTTATATTTTA
* *
17601290 -TGATTTAGGGTTTAAG
1 GGGGTTTAGGGTTTAAG
17601306 GGTTAGGGGT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
28 13 0.34
29 24 0.63
30 1 0.03
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (29 bp):
GGGGTTTAGGGTTTAAGATTTATATTTTA
Found at i:17601317 original size:15 final size:15
Alignment explanation
Indices: 17601297--17601326 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
17601287 TTATGATTTA
17601297 GGGTTTAAGGGTTAG
1 GGGTTTAAGGGTTAG
*
17601312 GGGTTTAAGGTTTAG
1 GGGTTTAAGGGTTAG
17601327 ATTAGTTAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.00, G:0.43, T:0.37
Consensus pattern (15 bp):
GGGTTTAAGGGTTAG
Found at i:17602608 original size:20 final size:20
Alignment explanation
Indices: 17602577--17602614 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
17602567 TAATATTTAG
17602577 CTTAAGTAATTAA-ATGTTT
1 CTTAAGTAATTAACATGTTT
17602596 CTTAAGCTAATTAACATGT
1 CTTAAG-TAATTAACATGT
17602615 CTAAGAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 7 0.41
21 4 0.24
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.42
Consensus pattern (20 bp):
CTTAAGTAATTAACATGTTT
Found at i:17604399 original size:30 final size:31
Alignment explanation
Indices: 17604365--17604452 Score: 90
Period size: 30 Copynumber: 2.9 Consensus size: 31
17604355 CTAGCTTATA
17604365 TTCAGCTCACGAGCTAAACCTTAGCTCAA-T
1 TTCAGCTCACGAGCTAAACCTTAGCTCAACT
* * * * * *
17604395 TTCAGCTTAGGAGTTTAATCTCAGCTCAACT
1 TTCAGCTCACGAGCTAAACCTTAGCTCAACT
* *
17604426 TT-AGCTGACGAGCTAAAGCTTAGCTCA
1 TTCAGCTCACGAGCTAAACCTTAGCTCA
17604453 TTTTAGTTTA
Statistics
Matches: 45, Mismatches: 12, Indels: 2
0.76 0.20 0.03
Matches are distributed among these distances:
30 42 0.93
31 3 0.07
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (31 bp):
TTCAGCTCACGAGCTAAACCTTAGCTCAACT
Found at i:17606337 original size:30 final size:30
Alignment explanation
Indices: 17606303--17606399 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
17606293 TAAACTAAAA
*
17606303 TGAGCTAAGTTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
* * * * * * *
17606333 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
17606363 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
17606392 ATGAGCTA
1 -TGAGCTA
17606400 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
Found at i:17608890 original size:30 final size:31
Alignment explanation
Indices: 17608810--17608892 Score: 98
Period size: 30 Copynumber: 2.7 Consensus size: 31
17608800 CTTTTGTTTC
*
17608810 AATTTCTTTTTCATCTTCTTTTTCACTCTCA
1 AATTTCTTTTTCATTTTCTTTTTCACTCTCA
* * *
17608841 AATTTC-TTTTCGTTCTCTTTTTCAGTCTC-
1 AATTTCTTTTTCATTTTCTTTTTCACTCTCA
* *
17608870 ATTTTCTTTTTTATTTTCTTTTT
1 AATTTCTTTTTCATTTTCTTTTT
17608893 GCTTTTCAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
29 5 0.12
30 32 0.74
31 6 0.14
ACGTcount: A:0.12, C:0.20, G:0.02, T:0.65
Consensus pattern (31 bp):
AATTTCTTTTTCATTTTCTTTTTCACTCTCA
Found at i:17608981 original size:15 final size:14
Alignment explanation
Indices: 17608961--17609024 Score: 56
Period size: 16 Copynumber: 4.2 Consensus size: 14
17608951 CTCTTGCCTC
17608961 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-TT
* *
17608976 TCTTTTTCTTGTTCT
1 TC-TTTTCTTTTTTT
17608991 TCTTTTGCTTTTTCTTT
1 TCTTTT-C-TTTT-TTT
*
17609008 TCTTTTCTTTATTT
1 TCTTTTCTTTTTTT
17609022 TCT
1 TCT
17609025 CTTTACAAGA
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
14 10 0.25
15 9 0.22
16 13 0.32
17 8 0.20
ACGTcount: A:0.03, C:0.17, G:0.03, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTTT
Found at i:17611099 original size:30 final size:30
Alignment explanation
Indices: 17611016--17611110 Score: 93
Period size: 30 Copynumber: 3.2 Consensus size: 30
17611006 AACTAAAACA
* *
17611016 AGCTAAGCTTTAGCTCGTGAGCTAAAGTTG
1 AGCTAAGGTTTAGCTCGTGAGCTGAAGTTG
* * * * * * *
17611046 TGCTGAGGCTAAACTCCTAAGCTGAAGTTG
1 AGCTAAGGTTTAGCTCGTGAGCTGAAGTTG
17611076 AGCTAAGGTTTAGCTCGTGAGCTGAAAG-TG
1 AGCTAAGGTTTAGCTCGTGAGCTG-AAGTTG
17611106 AGCTA
1 AGCTA
17611111 GGAGTGAGCT
Statistics
Matches: 48, Mismatches: 16, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
30 45 0.94
31 3 0.06
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.27
Consensus pattern (30 bp):
AGCTAAGGTTTAGCTCGTGAGCTGAAGTTG
Found at i:17611329 original size:30 final size:30
Alignment explanation
Indices: 17611295--17611391 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
17611285 AGCTCACTCC
17611295 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAACCT
* * * * *
17611325 TAGCTCAACTTCAGCTTAGGAGTTTAATCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * *
17611355 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
17611385 TAGCTCA
1 TAGCTCA
17611392 TTTTAGTTTA
Statistics
Matches: 53, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 1 0.02
30 52 0.98
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:17619402 original size:30 final size:30
Alignment explanation
Indices: 17619317--17619404 Score: 95
Period size: 30 Copynumber: 2.9 Consensus size: 30
17619307 TAAACTAAAA
* * *
17619317 TGAGCTAAGCTTTAGCTCGTGAGATAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
* * * * * *
17619347 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
17619377 TGAGCTAAGGTTTAGCTCGTGAGCTGAA
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAA
17619405 AGTGATCTAG
Statistics
Matches: 43, Mismatches: 15, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.27
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
Found at i:17620330 original size:33 final size:34
Alignment explanation
Indices: 17620257--17620330 Score: 82
Period size: 33 Copynumber: 2.2 Consensus size: 34
17620247 AATTTCAATT
*
17620257 TTCTTTTTCTCATTCTCTTTTTACTCTCTTTCACA
1 TTCTTTTTCTCATTCTCTTTTTA-TCTCTTTCAAA
*
17620292 CTCTTTTTCCTCAATT-TCTTTTT-T-TCTTTCAAA
1 TTCTTTTT-CTC-ATTCTCTTTTTATCTCTTTCAAA
17620325 TTCTTT
1 TTCTTT
17620331 CTCACATGCT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
33 13 0.38
34 1 0.03
35 7 0.21
36 10 0.29
37 3 0.09
ACGTcount: A:0.12, C:0.26, G:0.00, T:0.62
Consensus pattern (34 bp):
TTCTTTTTCTCATTCTCTTTTTATCTCTTTCAAA
Found at i:17623156 original size:10 final size:10
Alignment explanation
Indices: 17623143--17623181 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
17623133 ATTTTTTTCC
17623143 TTTTTTTGAA
1 TTTTTTTGAA
*
17623153 TTTTTTTCAAA
1 TTTTTTT-GAA
*
17623164 ATTTTTTGAA
1 TTTTTTTGAA
17623174 TTTTTTTG
1 TTTTTTTG
17623182 CTAAAATGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
10 16 0.67
11 8 0.33
ACGTcount: A:0.21, C:0.03, G:0.08, T:0.69
Consensus pattern (10 bp):
TTTTTTTGAA
Found at i:17625855 original size:29 final size:28
Alignment explanation
Indices: 17625797--17625890 Score: 107
Period size: 28 Copynumber: 3.3 Consensus size: 28
17625787 ATTGCATGAC
* *
17625797 TATGAATGTGATTGGGCCTAATAGGCCA
1 TATGAATGTGATTAGGCCTAATGGGCCA
* *
17625825 TATGAATGTGATTTTGGCCTAATGGGGCA
1 TATGAATGTGA-TTAGGCCTAATGGGCCA
* * *
17625854 TATGAAAGAGATTAGGCCTAGTGGGCCA
1 TATGAATGTGATTAGGCCTAATGGGCCA
*
17625882 TATGCATGT
1 TATGAATGT
17625891 ATGTAGACTT
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 31 0.57
29 23 0.43
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.30
Consensus pattern (28 bp):
TATGAATGTGATTAGGCCTAATGGGCCA
Found at i:17627697 original size:20 final size:20
Alignment explanation
Indices: 17627651--17627698 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
17627641 AGTAAGCTCG
*
17627651 GTTGACCTCAAATGAGCTGA
1 GTTGAGCTCAAATGAGCTGA
*** *
17627671 AACGAGCTCAAATGGGCTGA
1 GTTGAGCTCAAATGAGCTGA
17627691 GTTGAGCT
1 GTTGAGCT
17627699 GGACGGAGCT
Statistics
Matches: 20, Mismatches: 8, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (20 bp):
GTTGAGCTCAAATGAGCTGA
Found at i:17630935 original size:38 final size:38
Alignment explanation
Indices: 17630893--17631030 Score: 204
Period size: 38 Copynumber: 3.6 Consensus size: 38
17630883 TTAAGCTCGA
*
17630893 ATATAATACCAGCACTAAGCCTGCAGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCAGGATTTAACCCGG
* *** *
17630931 ATATAATACTAGCACGAAGCCTATGGGATTTAACCTGG
1 ATATAATACCAGCACGAAGCCTGCAGGATTTAACCCGG
* *
17630969 ATATAATACCAGTACGAAGCTTGCAGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCAGGATTTAACCCGG
17631007 ATATAATACCAGCACGAAGCCTGC
1 ATATAATACCAGCACGAAGCCTGC
17631031 GGACCTTTAA
Statistics
Matches: 85, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 85 1.00
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCAGGATTTAACCCGG
Found at i:17636778 original size:30 final size:30
Alignment explanation
Indices: 17636733--17636792 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
17636723 ATTTAATACG
*
17636733 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
17636763 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
17636793 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:17639587 original size:30 final size:30
Alignment explanation
Indices: 17639492--17639588 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 30
17639482 AGCTCACTCC
* * *
17639492 TAGCTC-ACTTTCAACTCATGAGCTAAACCT
1 TAGCTCAACTTT-AGCTCACGAGCTAAAGCT
* * * **
17639522 TAGCTCAACTTCAGCTTAGGAG-TTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAAG-CT
*
17639552 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAAGCT
17639582 TAGCTCA
1 TAGCTCA
17639589 TTTTAGTTTA
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 41 0.82
31 7 0.14
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAAGCT
Found at i:17645281 original size:30 final size:30
Alignment explanation
Indices: 17645196--17645292 Score: 115
Period size: 30 Copynumber: 3.2 Consensus size: 30
17645186 TAAACTAAAA
*
17645196 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
* * * * * *
17645226 TGAGCTGAGATTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
17645256 TGAGCTAAGGTTTAGCTCGTGAGCTGAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
17645285 ATGAGCTA
1 -TGAGCTA
17645293 GGAGTGAGCT
Statistics
Matches: 53, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 1 0.02
30 52 0.98
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
Found at i:17647904 original size:150 final size:150
Alignment explanation
Indices: 17647633--17647932 Score: 591
Period size: 150 Copynumber: 2.0 Consensus size: 150
17647623 AGAACGATGA
*
17647633 GAATACAAATCTTGTTCGAAAGATGAAGAACTATTTGCATATGATTCATAATCAAAACTTCGTGA
1 GAATACAAATCTTGTTCGAAAGATGAAGAACTATTTGCATATGATTCACAATCAAAACTTCGTGA
17647698 AGAATACTCCGAGTAAGATTTCTTTGAAGATCTAGTAGGAGTATGTCTTTCTCTTCGAACGCCAT
66 AGAATACTCCGAGTAAGATTTCTTTGAAGATCTAGTAGGAGTATGTCTTTCTCTTCGAACGCCAT
17647763 CTTGGAACGAATCAAAATCG
131 CTTGGAACGAATCAAAATCG
17647783 GAATACAAATCTTGTTCGAAAGATGAAGAACTATTTGCATATGATTCACAATCAAAACTTCGTGA
1 GAATACAAATCTTGTTCGAAAGATGAAGAACTATTTGCATATGATTCACAATCAAAACTTCGTGA
17647848 AGAATACTCCGAGTAAGATTTCTTTGAAGATCTAGTAGGAGTATGTCTTTCTCTTCGAACGCCAT
66 AGAATACTCCGAGTAAGATTTCTTTGAAGATCTAGTAGGAGTATGTCTTTCTCTTCGAACGCCAT
17647913 CTTGGAACGAATCAAAATCG
131 CTTGGAACGAATCAAAATCG
17647933 TAATCGGCTT
Statistics
Matches: 149, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 149 1.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (150 bp):
GAATACAAATCTTGTTCGAAAGATGAAGAACTATTTGCATATGATTCACAATCAAAACTTCGTGA
AGAATACTCCGAGTAAGATTTCTTTGAAGATCTAGTAGGAGTATGTCTTTCTCTTCGAACGCCAT
CTTGGAACGAATCAAAATCG
Found at i:17648677 original size:14 final size:12
Alignment explanation
Indices: 17648658--17648713 Score: 76
Period size: 12 Copynumber: 4.5 Consensus size: 12
17648648 GCACAAATCA
17648658 TTTTTTTTGAAACT
1 TTTTTTTTG-AA-T
17648672 TTTTTTTTGAAT
1 TTTTTTTTGAAT
* *
17648684 TTTTTTTCGATT
1 TTTTTTTTGAAT
17648696 TTTTTTTTGAAT
1 TTTTTTTTGAAT
17648708 TTTTTT
1 TTTTTT
17648714 ATACTTGTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
12 27 0.71
13 2 0.05
14 9 0.24
ACGTcount: A:0.14, C:0.04, G:0.07, T:0.75
Consensus pattern (12 bp):
TTTTTTTTGAAT
Found at i:17649291 original size:30 final size:30
Alignment explanation
Indices: 17649257--17649413 Score: 163
Period size: 30 Copynumber: 5.2 Consensus size: 30
17649247 AGCTCACTCC
17649257 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
17649287 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
*
17649317 CAGCTCAACTTTAGCTCACGAGCTAAACCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* * * * * *
17649347 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
17649377 CAGCTCAACTTTAGCTCACGAGCTAAAACT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
17649407 TAGCTCA
1 TAGCTCA
17649414 TTTTAGTTTA
Statistics
Matches: 97, Mismatches: 29, Indels: 2
0.76 0.23 0.02
Matches are distributed among these distances:
29 1 0.01
30 96 0.99
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:17649351 original size:60 final size:60
Alignment explanation
Indices: 17649258--17649413 Score: 287
Period size: 60 Copynumber: 2.6 Consensus size: 60
17649248 GCTCACTCCT
17649258 AGCTCATA-TTTAGCTCACGAGCTAAACCTTAGCTCAACTTCAGCTTAGGAGTTTAGCCTC
1 AGCTCA-ACTTTAGCTCACGAGCTAAACCTTAGCTCAACTTCAGCTTAGGAGTTTAGCCTC
17649318 AGCTCAACTTTAGCTCACGAGCTAAACCTTAGCTCAACTTCAGCTTAGGAGTTTAGCCTC
1 AGCTCAACTTTAGCTCACGAGCTAAACCTTAGCTCAACTTCAGCTTAGGAGTTTAGCCTC
*
17649378 AGCTCAACTTTAGCTCACGAGCTAAAACTTAGCTCA
1 AGCTCAACTTTAGCTCACGAGCTAAACCTTAGCTCA
17649414 TTTTAGTTTA
Statistics
Matches: 94, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
59 1 0.01
60 93 0.99
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (60 bp):
AGCTCAACTTTAGCTCACGAGCTAAACCTTAGCTCAACTTCAGCTTAGGAGTTTAGCCTC
Found at i:17652268 original size:30 final size:30
Alignment explanation
Indices: 17652183--17652279 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 30
17652173 TAAACTAAAA
* *
17652183 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
* * * *
17652213 TGAGCTGAGATTAAACTTC-TAAGCTGAAGT
1 TGAGCTAAGATTTAGC-TCGTGAGCTGAAGT
*
17652243 TGAGCTAAGGTTTAGCTCGTGAGCTGAA-T
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
17652272 ATGAGCTA
1 -TGAGCTA
17652280 GGAGTGAGCT
Statistics
Matches: 53, Mismatches: 11, Indels: 6
0.76 0.16 0.09
Matches are distributed among these distances:
29 3 0.06
30 48 0.91
31 2 0.04
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
Found at i:17657558 original size:9 final size:10
Alignment explanation
Indices: 17657551--17657607 Score: 53
Period size: 11 Copynumber: 5.5 Consensus size: 10
17657541 AAGAGAAAAC
17657551 AAAGAAAAGA
1 AAAGAAAAGA
17657561 AAAGAAAAAGCA
1 AAAG-AAAAG-A
*
17657573 AAAGAAGA-A
1 AAAGAAAAGA
*
17657582 AAAGAAAATA
1 AAAGAAAAGA
*
17657592 AAATAAAAAGA
1 AAA-GAAAAGA
17657603 AAAGA
1 AAAGA
17657608 GAGGCAAGAG
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
9 8 0.21
10 9 0.24
11 16 0.42
12 5 0.13
ACGTcount: A:0.79, C:0.02, G:0.16, T:0.04
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:17657574 original size:21 final size:20
Alignment explanation
Indices: 17657540--17657605 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 20
17657530 ACATTCTTGT
17657540 AAAGAGAAAACAAAGAAAAG-A
1 AAAGA-AAAACAAA-AAAAGAA
*
17657561 AAAGAAAAAGCAAAAGAAGAA
1 AAAGAAAAA-CAAAAAAAGAA
*
17657582 AAAGAAAATAAAATAAAAAGAA
1 AAAGAAAA-ACAA-AAAAAGAA
17657604 AA
1 AA
17657606 GAGAGGCAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
20 8 0.21
21 20 0.53
22 10 0.26
ACGTcount: A:0.79, C:0.03, G:0.15, T:0.03
Consensus pattern (20 bp):
AAAGAAAAACAAAAAAAGAA
Found at i:17657575 original size:6 final size:5
Alignment explanation
Indices: 17657551--17657607 Score: 53
Period size: 5 Copynumber: 11.0 Consensus size: 5
17657541 AAGAGAAAAC
* * *
17657551 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGA AAATA AAATAA
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAAGA AAA-GA
17657598 AAAGA AAAGA
1 AAAGA AAAGA
17657608 GAGGCAAGAG
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
4 3 0.07
5 26 0.60
6 14 0.33
ACGTcount: A:0.79, C:0.02, G:0.16, T:0.04
Consensus pattern (5 bp):
AAAGA
Found at i:17657600 original size:25 final size:25
Alignment explanation
Indices: 17657555--17657603 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
17657545 GAAAACAAAG
17657555 AAAAGAAAAGAAAAAGCAAAAGAAGA
1 AAAAGAAAAGAAAAA-CAAAAGAAGA
*
17657581 AAAAGAAAATAAAATA-AAAAGAA
1 AAAAGAAAAGAAAA-ACAAAAGAA
17657604 AAGAGAGGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 7 0.33
26 13 0.62
27 1 0.05
ACGTcount: A:0.80, C:0.02, G:0.14, T:0.04
Consensus pattern (25 bp):
AAAAGAAAAGAAAAACAAAAGAAGA
Found at i:17657696 original size:12 final size:12
Alignment explanation
Indices: 17657688--17657712 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
17657678 TTTGAAAAGC
17657688 AAAAAGAAAATG
1 AAAAAGAAAATG
17657700 AAAAAGAAAATG
1 AAAAAGAAAATG
17657712 A
1 A
17657713 GATTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:17657709 original size:18 final size:18
Alignment explanation
Indices: 17657682--17657737 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
17657672 AAAGCCTTTG
17657682 AAAAGCAAAAAGAAAATGA
1 AAAAG-AAAAAGAAAATGA
* * *
17657701 AAAAGAAAATGAGATTGA
1 AAAAGAAAAAGAAAATGA
* *
17657719 AAAAGAGAACGAAAA-GA
1 AAAAGAAAAAGAAAATGA
17657736 AA
1 AA
17657738 TTTGAGAGTG
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.70, C:0.04, G:0.20, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAAGAAAATGA
Found at i:17657722 original size:30 final size:31
Alignment explanation
Indices: 17657688--17657766 Score: 90
Period size: 30 Copynumber: 2.6 Consensus size: 31
17657678 TTTGAAAAGC
*
17657688 AAAAAGAAAATGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
* * *
17657718 AAAAAGAGAACG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
**
17657748 AAAAAGAAGTTGAAAAAGA
1 AAAAAGAAAATGAAAAAGA
17657767 TATTGAAAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
29 8 0.21
30 25 0.64
31 6 0.15
ACGTcount: A:0.63, C:0.01, G:0.23, T:0.13
Consensus pattern (31 bp):
AAAAAGAAAATGAAAAAGAAATATGAGAGTG
Found at i:17657764 original size:13 final size:12
Alignment explanation
Indices: 17657746--17657778 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
17657736 AATTTGAGAG
17657746 TGAAAAAGA-AGT
1 TGAAAAAGATA-T
17657758 TGAAAAAGATAT
1 TGAAAAAGATAT
17657770 TGAAAAAGA
1 TGAAAAAGA
17657779 GATTAAAGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 19 0.95
13 1 0.05
ACGTcount: A:0.61, C:0.00, G:0.21, T:0.18
Consensus pattern (12 bp):
TGAAAAAGATAT
Found at i:17660022 original size:30 final size:30
Alignment explanation
Indices: 17659998--17660096 Score: 92
Period size: 30 Copynumber: 3.3 Consensus size: 30
17659988 CGAGCTCACT
17659998 CTTAGCTCATA-TTCAGCTTACGAGCTAAAC
1 CTTAGCTCA-ACTTCAGCTTACGAGCTAAAC
* * * *
17660028 CTTAGCTCAACTTCAGCTTAGGAGTTTAAT
1 CTTAGCTCAACTTCAGCTTACGAGCTAAAC
* * * * * *
17660058 CTCAGCTTAACTTTAGCTTAAGGGCTAAAG
1 CTTAGCTCAACTTCAGCTTACGAGCTAAAC
17660088 CTTAGCTCA
1 CTTAGCTCA
17660097 TTTTAGCTCA
Statistics
Matches: 54, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
29 1 0.02
30 53 0.98
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.32
Consensus pattern (30 bp):
CTTAGCTCAACTTCAGCTTACGAGCTAAAC
Found at i:17660885 original size:181 final size:178
Alignment explanation
Indices: 17660584--17660941 Score: 635
Period size: 181 Copynumber: 2.0 Consensus size: 178
17660574 AGCTGCTAAC
*
17660584 TAATTTTATGTTGACCATAGAGCTCCTTGAACATGTTCGCAATTTGAATTGACCTATAAGCTACT
1 TAATTTTATGTTGACCATAGAGCTCCTTGAACATGTTCACAATTTGAATTGACCTATAAGCTACT
17660649 ACACTGCATGGATGGGTTCAAGAACGTCCAAAGGAAGGAATTAACTCAATAATTCAACACATTGA
66 ACACTGCATGGATGGGTTCAAGAACGTCCAAAGGAAGGAATTAACTCAATAATTCAACACATTGA
*
17660714 TTGAATTAAGTGCATGCACAAAGGGGAGAACAAATTTACTTGGTTCAA
131 TTGAATTAAGTGCATGCACAAAGGGGAGAACAAATTTACTAGGTTCAA
*
17660762 TAATTTTATGTTGACCATAGAGCTCCTTGAACATGTTCACACTTTGAATTGACCTCTATAAGCTA
1 TAATTTTATGTTGACCATAGAGCTCCTTGAACATGTTCACAATTTGAATTGA-C-CTATAAGCTA
*
17660827 CTACACATGCATGGATGGGTTCAAGAACGTCCAAGGGAAGGAATTAACTCAATAATTCAACACAT
64 CTACAC-TGCATGGATGGGTTCAAGAACGTCCAAAGGAAGGAATTAACTCAATAATTCAACACAT
* *
17660892 TGATTGAATTAAGTGTATGCACAAAGGGGAGAACGAATTTACTAGGTTCA
128 TGATTGAATTAAGTGCATGCACAAAGGGGAGAACAAATTTACTAGGTTCA
17660942 TGCTGCCATT
Statistics
Matches: 171, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
178 50 0.29
179 1 0.01
180 16 0.09
181 104 0.61
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (178 bp):
TAATTTTATGTTGACCATAGAGCTCCTTGAACATGTTCACAATTTGAATTGACCTATAAGCTACT
ACACTGCATGGATGGGTTCAAGAACGTCCAAAGGAAGGAATTAACTCAATAATTCAACACATTGA
TTGAATTAAGTGCATGCACAAAGGGGAGAACAAATTTACTAGGTTCAA
Done.