Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56482370
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1659275 characters in sequence are not A, C, G, or T
File 64 of 172
Found at i:20870957 original size:27 final size:27
Alignment explanation
Indices: 20870917--20871396 Score: 539
Period size: 27 Copynumber: 17.5 Consensus size: 27
20870907 ATCTGAGCTG
*
20870917 TGTAGGGTAAAATGACCGTAATACCCC
1 TGTAGGGTAAAATGACCGTAATGCCCC
*
20870944 TATAGGGTAAAATGACCGTAATGCCCC
1 TGTAGGGTAAAATGACCGTAATGCCCC
*
20870971 TGTAGGGTAAAATGATCGTAATGCCCC
1 TGTAGGGTAAAATGACCGTAATGCCCC
* * * *
20870998 TGTAGCGTAAAATGACCATAATACCAC
1 TGTAGGGTAAAATGACCGTAATGCCCC
20871025 TGTAGGGTAAAATGACCGTGATGTCGTAATGCCCC
1 TGTAGGGTAAAATGA-C-------CGTAATGCCCC
** *
20871060 TCAATGGTAAAATGACCGTAATGCCCC
1 TGTAGGGTAAAATGACCGTAATGCCCC
*
20871087 TGTAGGATAAAATGACCCGTAATGCCCC
1 TGTAGGGTAAAATGA-CCGTAATGCCCC
* *
20871115 TGTAGGATAAAATGATCGTAATGCCCC
1 TGTAGGGTAAAATGACCGTAATGCCCC
* *
20871142 TGTATGGTAAAATGACTGTAATGCCCC
1 TGTAGGGTAAAATGACCGTAATGCCCC
* * *
20871169 TGTAAGGTAAAATGACCATAATACCCC
1 TGTAGGGTAAAATGACCGTAATGCCCC
* * ** *
20871196 TGTAAGGCAAAATGATAGTAATACCCC
1 TGTAGGGTAAAATGACCGTAATGCCCC
* *
20871223 TGTAGGTTAAAATGACCGTAGTGCCCC
1 TGTAGGGTAAAATGACCGTAATGCCCC
**
20871250 TGTAGGGTAAAATGACTATAATGCCCC
1 TGTAGGGTAAAATGACCGTAATGCCCC
*
20871277 TGTA-GGTAAAATGACCGTAATACCCC
1 TGTAGGGTAAAATGACCGTAATGCCCC
* *
20871303 TGTAGGGTACAATGACCGTAATACCCC
1 TGTAGGGTAAAATGACCGTAATGCCCC
*
20871330 TGTAGGGTACAATGACCGTAATGCCCC
1 TGTAGGGTAAAATGACCGTAATGCCCC
* * * *
20871357 TATAGGGTAAAATGACCATAATACCTC
1 TGTAGGGTAAAATGACCGTAATGCCCC
* *
20871384 TATATGGTAAAAT
1 TGTAGGGTAAAAT
20871397 CATGATTATG
Statistics
Matches: 388, Mismatches: 55, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
26 23 0.06
27 316 0.81
28 28 0.07
34 1 0.00
35 20 0.05
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.24
Consensus pattern (27 bp):
TGTAGGGTAAAATGACCGTAATGCCCC
Found at i:20871517 original size:27 final size:27
Alignment explanation
Indices: 20871471--20871616 Score: 184
Period size: 27 Copynumber: 5.4 Consensus size: 27
20871461 AGTATGACTT
* * * *
20871471 TAGGGAAAAATTACCATAATACCCGTG
1 TAGGGTAAAATGACCGTAATACCCCTG
* * *
20871498 TAGGGTAAAATGATCGTAATGCCCCTA
1 TAGGGTAAAATGACCGTAATACCCCTG
20871525 TAGGGTAAAATGACCGTAATACCCCTG
1 TAGGGTAAAATGACCGTAATACCCCTG
* * *
20871552 TAGGGTAAAATGACTGTAATGCCCCCG
1 TAGGGTAAAATGACCGTAATACCCCTG
*
20871579 TAGGGTAAAATGACCGTAATACCCCTA
1 TAGGGTAAAATGACCGTAATACCCCTG
*
20871606 TATGGTAAAAT
1 TAGGGTAAAAT
20871617 CATGATTATG
Statistics
Matches: 101, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 101 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
TAGGGTAAAATGACCGTAATACCCCTG
Found at i:20871550 original size:220 final size:219
Alignment explanation
Indices: 20871252--20871691 Score: 736
Period size: 220 Copynumber: 2.0 Consensus size: 219
20871242 AGTGCCCCTG
* * * * *
20871252 TAGGGTAAAATGACTATAATGCCCCTGTAGGTAAAATGACCGTAATACCCCTGTAGGGTACAATG
1 TAGGGAAAAATGACCATAATACCCCTGTAGGTAAAATGACCGTAATACCCCTATAGGGTAAAATG
* *
20871317 ACCGTAATACCCCTGTAGGGTACAATGACCGTAATGCCCCTATAGGGTAAAATGACCATAATACC
66 ACCGTAATACCCCTGTAGGGTAAAATGACCGTAATGCCCCCATAGGGTAAAATGACCATAATACC
*
20871382 TCTATATGGTAAAATCATGATTATGCCCTTATGTTTCGTATGATTGATATGCTTATGATTTACAT
131 CCTATATGGTAAAATCATGATTATGCCCTTATGTTTCGTATGATTGATATGCTTATGATTTACAT
20871447 ATATGATTGTACTAAGTATGACTT
196 ATATGATTGTACTAAGTATGACTT
* * * *
20871471 TAGGGAAAAATTACCATAATACCCGTGTAGGGTAAAATGATCGTAATGCCCCTATAGGGTAAAAT
1 TAGGGAAAAATGACCATAATACCCCTGTA-GGTAAAATGACCGTAATACCCCTATAGGGTAAAAT
* * *
20871536 GACCGTAATACCCCTGTAGGGTAAAATGACTGTAATGCCCCCGTAGGGTAAAATGACCGTAATAC
65 GACCGTAATACCCCTGTAGGGTAAAATGACCGTAATGCCCCCATAGGGTAAAATGACCATAATAC
20871601 CCCTATATGGTAAAATCATGATTATGCCCTTATGTTTCGTATGATTGATATGCTTATGATTTACA
130 CCCTATATGGTAAAATCATGATTATGCCCTTATGTTTCGTATGATTGATATGCTTATGATTTACA
20871666 TATATGATTGTACTAAGTATGACTT
195 TATATGATTGTACTAAGTATGACTT
20871691 T
1 T
20871692 GCATACACGT
Statistics
Matches: 205, Mismatches: 15, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
219 24 0.12
220 181 0.88
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.31
Consensus pattern (219 bp):
TAGGGAAAAATGACCATAATACCCCTGTAGGTAAAATGACCGTAATACCCCTATAGGGTAAAATG
ACCGTAATACCCCTGTAGGGTAAAATGACCGTAATGCCCCCATAGGGTAAAATGACCATAATACC
CCTATATGGTAAAATCATGATTATGCCCTTATGTTTCGTATGATTGATATGCTTATGATTTACAT
ATATGATTGTACTAAGTATGACTT
Found at i:20871606 original size:81 final size:81
Alignment explanation
Indices: 20871065--20871616 Score: 436
Period size: 81 Copynumber: 6.8 Consensus size: 81
20871055 GCCCCTCAAT
* * *
20871065 GGTAAAATGACCGTAATGCCCCTGTAGGATAAAATGACCCGTAATGCCCCTGTAGGATAAAATGA
1 GGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGA-CCGTAATGCCCCTATAGGGTAAAATGA
* * *
20871130 TCGTAATGCCCCTGTAT
65 CCGTAATACCCCTGTAG
* * * * * * * *
20871147 GGTAAAATGACTGTAATGCCCCTGTAAGGTAAAATGACCATAATACCCCTGTAAGGCAAAATGAT
1 GGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGAC
*
20871212 AGTAATACCCCTGTAG
66 CGTAATACCCCTGTAG
* * ** *
20871228 GTTAAAATGACCGTAGTGCCCCTGTAGGGTAAAATGACTATAATGCCCCTGTA-GGTAAAATGAC
1 GGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGAC
20871292 CGTAATACCCCTGTAG
66 CGTAATACCCCTGTAG
* * *
20871308 GGTACAATGACCGTAATACCCCTGTAGGGTACAATGACCGTAATGCCCCTATAGGGTAAAATGAC
1 GGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGAC
* * * *
20871373 CATAATACCTCTATAT
66 CGTAATACCCCTGTAG
* * * ** *** ** * **
20871389 GGTAAAATCA-TGATTATG-CCCT-TATGTTTCGTATGATTG-ATATG--CTTAT-GATTTACAT
1 GGTAAAATGACCG-TAATGCCCCTGTA-GGGTAAAATGACCGTA-ATGCCCCTATAG-GGTA-A-
** *** *
20871447 ATATGATTGTACTAAGTATGACTTTAG
60 A-ATGACCG---TAA-TACCCCTGTAG
* * * * * *
20871474 GGAAAAATTACCATAATACCCGTGTAGGGTAAAATGATCGTAATGCCCCTATAGGGTAAAATGAC
1 GGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGAC
20871539 CGTAATACCCCTGTAG
66 CGTAATACCCCTGTAG
* * * *
20871555 GGTAAAATGACTGTAATGCCCCCGTAGGGTAAAATGACCGTAATACCCCTATATGGTAAAAT
1 GGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAAT
20871617 CATGATTATG
Statistics
Matches: 364, Mismatches: 87, Indels: 39
0.74 0.18 0.08
Matches are distributed among these distances:
77 1 0.00
78 6 0.02
79 4 0.01
80 85 0.23
81 180 0.49
82 37 0.10
84 3 0.01
85 22 0.06
86 15 0.04
87 4 0.01
88 6 0.02
89 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.27
Consensus pattern (81 bp):
GGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGAC
CGTAATACCCCTGTAG
Found at i:20871629 original size:54 final size:53
Alignment explanation
Indices: 20871065--20871616 Score: 252
Period size: 54 Copynumber: 10.2 Consensus size: 53
20871055 GCCCCTCAAT
* ** * *
20871065 GGTAAAATGACCGTAATGCCCCTGTAGGATAAAATGACCCGTAATGCCCCTGTAG
1 GGTAAAATGA-TGTAATGCCCCCATAGGGTAAAATGA-CCGTAATACCCCTGTAG
* ** * * * *
20871120 GATAAAATGATCGTAATGCCCCTGTATGGTAAAATGACTGTAATGCCCCTGTAA
1 GGTAAAATGAT-GTAATGCCCCCATAGGGTAAAATGACCGTAATACCCCTGTAG
** * ** * * **
20871174 GGTAAAATGACCATAATACCCCTGTAAGGCAAAATGATAGTAATACCCCTGTAG
1 GGTAAAATGA-TGTAATGCCCCCATAGGGTAAAATGACCGTAATACCCCTGTAG
* * * ** ** *
20871228 GTTAAAATGACCGTAGTGCCCCTGTAGGGTAAAATGACTATAATGCCCCTGTA-
1 GGTAAAATGA-TGTAATGCCCCCATAGGGTAAAATGACCGTAATACCCCTGTAG
* * ** *
20871281 GGTAAAATGACCGTAATACCCCTGTAGGGTACAATGACCGTAATACCCCTGTAG
1 GGTAAAATGA-TGTAATGCCCCCATAGGGTAAAATGACCGTAATACCCCTGTAG
* * * * * * *
20871335 GGTACAATGACCGTAATGCCCCTATAGGGTAAAATGACCATAATACCTCTATAT
1 GGTAAAATGA-TGTAATGCCCCCATAGGGTAAAATGACCGTAATACCCCTGTAG
* * ** ** *** * * **
20871389 GGTAAAATCATGATTATGCCCTTAT-GTTTCGTATGA--TTGATA-TGCT-TATG
1 GGTAAAATGATG-TAATGCCCCCATAGGGTAAAATGACCGTAATACCCCTGTA-G
** **** ** * * * *
20871439 ATTTACATATATGATTGTACTAAGTATGACTTTAGGGAAAAATTACCATAATACCCGTGTAG
1 -GGTA-A-A-ATGA-TG---TAA-TGCCCCCATAGGGTAAAATGACCGTAATACCCCTGTAG
*
20871501 GGTAAAATGATCGTAATGCCCCTATAGGGTAAAATGACCGTAATACCCCTGTAG
1 GGTAAAATGAT-GTAATGCCCCCATAGGGTAAAATGACCGTAATACCCCTGTAG
* * *
20871555 GGTAAAATGACTGTAATGCCCCCGTAGGGTAAAATGACCGTAATACCCCTATAT
1 GGTAAAATGA-TGTAATGCCCCCATAGGGTAAAATGACCGTAATACCCCTGTAG
20871609 GGTAAAAT
1 GGTAAAAT
20871617 CATGATTATG
Statistics
Matches: 383, Mismatches: 94, Indels: 41
0.74 0.18 0.08
Matches are distributed among these distances:
49 2 0.01
50 2 0.01
51 6 0.02
52 1 0.00
53 54 0.14
54 253 0.66
55 38 0.10
57 3 0.01
58 8 0.02
59 5 0.01
60 1 0.00
61 6 0.02
62 2 0.01
63 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.27
Consensus pattern (53 bp):
GGTAAAATGATGTAATGCCCCCATAGGGTAAAATGACCGTAATACCCCTGTAG
Found at i:20872040 original size:33 final size:33
Alignment explanation
Indices: 20871963--20872055 Score: 97
Period size: 28 Copynumber: 3.0 Consensus size: 33
20871953 TAATTGCATT
* *
20871963 ACACTGTACTGATACTGTATTGGGCTTAGGCCC
1 ACACTGTACTGATACTGTATAGGGCTAAGGCCC
*
20871996 ACAC--TA-T--TACTGTATAGGGCTAAGTCCC
1 ACACTGTACTGATACTGTATAGGGCTAAGGCCC
* * *
20872024 AGACTGTACTGATACTGAATAGGGCTCAGGCC
1 ACACTGTACTGATACTGTATAGGGCTAAGGCC
20872056 TAGACTATTA
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
28 21 0.44
30 3 0.06
31 3 0.06
33 21 0.44
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (33 bp):
ACACTGTACTGATACTGTATAGGGCTAAGGCCC
Found at i:20877988 original size:37 final size:37
Alignment explanation
Indices: 20877947--20878020 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
20877937 ATACTTAGAT
20877947 AGCATAAATATCGAATTTCTTGTTCTTGAACATAATA
1 AGCATAAATATCGAATTTCTTGTTCTTGAACATAATA
*
20877984 AGCATACATATCGAATTTCTTGTTCTTGAACATAATA
1 AGCATAAATATCGAATTTCTTGTTCTTGAACATAATA
20878021 TACCAAATTC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (37 bp):
AGCATAAATATCGAATTTCTTGTTCTTGAACATAATA
Found at i:20881275 original size:27 final size:27
Alignment explanation
Indices: 20881245--20881385 Score: 182
Period size: 27 Copynumber: 5.2 Consensus size: 27
20881235 GTGATGAAGT
20881245 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
20881272 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* *
20881299 CACCAGAT-CAGATAATCGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
20881326 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* *
20881353 CACCAGAT-CAGATAATTGTAGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
20881380 CACCAG
1 CACCAG
20881386 GACGCTTCCT
Statistics
Matches: 101, Mismatches: 6, Indels: 14
0.83 0.05 0.12
Matches are distributed among these distances:
26 10 0.10
27 87 0.86
28 4 0.04
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.17
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:20881320 original size:54 final size:54
Alignment explanation
Indices: 20881245--20881385 Score: 239
Period size: 54 Copynumber: 2.6 Consensus size: 54
20881235 GTGATGAAGT
*
20881245 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
20881299 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
20881353 CACCAGATCAGATAATTGTAGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
20881386 GACGCTTCCT
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 77 0.94
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:20883000 original size:26 final size:26
Alignment explanation
Indices: 20882970--20883049 Score: 151
Period size: 26 Copynumber: 3.1 Consensus size: 26
20882960 TGAAATTCCC
20882970 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
20882996 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
20883022 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
20883048 AT
1 AT
20883050 AAATTTCTAT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:20884605 original size:43 final size:42
Alignment explanation
Indices: 20884544--20884692 Score: 119
Period size: 43 Copynumber: 3.5 Consensus size: 42
20884534 AACGGCGACA
*
20884544 TCCCAGAC-GTGGTCTTACATGTAATTCAATATCGATGCCTCTG
1 TCCCAGACAG-GGTCTTACACGTAATTCAATATCGATGCC-CTG
* *
20884587 TCCCAGACAGGGTCTTACACGAAATT-ATATAT-GATGCCGATG
1 TCCCAGACAGGGTCTTACACGTAATTCA-ATATCGATGCC-CTG
* * * * *
20884629 TTCTAGACATGGTCTTATACGTAAATCTC-A-ATCGAGGCCCGTG
1 TCCCAGACAGGGTCTTACACGT-AAT-TCAATATCGATGCCC-TG
*
20884672 TCCCAGACACGGTCTTACACG
1 TCCCAGACAGGGTCTTACACG
20884693 ATATCTCAAA
Statistics
Matches: 84, Mismatches: 15, Indels: 14
0.74 0.13 0.12
Matches are distributed among these distances:
42 28 0.33
43 54 0.64
44 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (42 bp):
TCCCAGACAGGGTCTTACACGTAATTCAATATCGATGCCCTG
Found at i:20893913 original size:21 final size:21
Alignment explanation
Indices: 20893889--20893928 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
20893879 CAAGGTTAAA
20893889 TAAGT-AAATCAATAACAAACT
1 TAAGTAAAAT-AATAACAAACT
20893910 TAAGTAAAATAATAACAAA
1 TAAGTAAAATAATAACAAA
20893929 ATAATGTATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.62, C:0.10, G:0.05, T:0.23
Consensus pattern (21 bp):
TAAGTAAAATAATAACAAACT
Found at i:20902958 original size:29 final size:28
Alignment explanation
Indices: 20902922--20902999 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 28
20902912 TCATGAGATT
20902922 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
* *
20902952 -GCACTAAGTGTGTGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
20902979 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
20903000 GATTATTAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 5 0.12
29 33 0.80
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:20904509 original size:113 final size:113
Alignment explanation
Indices: 20904311--20904536 Score: 346
Period size: 113 Copynumber: 2.0 Consensus size: 113
20904301 TTGGCCGGAC
* * *
20904311 CAAAAATTCTAGAAAAAAATCCATAGGTGAGGACATGAGTCTAGTTTCAGGGAAAAATCACAAAA
1 CAAAAATTCTAGAAAAAAATACATAGATGAGGACATGAGTCTAGTTTCAGGAAAAAATCACAAAA
* *
20904376 CTGATTTTTGAGTTGTGAAACTCAAGATATGATTTTTGAAGCGACTAG
66 CTGATTTTCGAGTTGTGAAACTCAAGATATGATTTTTAAAGCGACTAG
** * *
20904424 CAAAAATTCTAGAAAAAAATATGTAGATG-GGCATATGAGTCTAGTTTCAGGAAAAAATCACGAA
1 CAAAAATTCTAGAAAAAAATACATAGATGAGG-ACATGAGTCTAGTTTCAGGAAAAAATCACAAA
*
20904488 ACTGATTTTCGAGTTGTGAAACTCAAGATATGATTTTTAAAGTGACTAG
65 ACTGATTTTCGAGTTGTGAAACTCAAGATATGATTTTTAAAGCGACTAG
20904537 TACGTTTTCA
Statistics
Matches: 102, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
112 2 0.02
113 100 0.98
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.28
Consensus pattern (113 bp):
CAAAAATTCTAGAAAAAAATACATAGATGAGGACATGAGTCTAGTTTCAGGAAAAAATCACAAAA
CTGATTTTCGAGTTGTGAAACTCAAGATATGATTTTTAAAGCGACTAG
Found at i:20911030 original size:40 final size:39
Alignment explanation
Indices: 20910999--20911208 Score: 233
Period size: 40 Copynumber: 5.3 Consensus size: 39
20910989 GGACTAAGAT
* *
20910999 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
20911039 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
20911079 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* ** *
20911119 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGAT-ACAAATCCGGGTTAAGTC
* * * * *
20911159 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
20911198 CCGAAGGCATT
1 CCGAAGGCATT
20911209 TGAACGAGGA
Statistics
Matches: 153, Mismatches: 13, Indels: 9
0.87 0.07 0.05
Matches are distributed among these distances:
39 33 0.22
40 117 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:20911162 original size:120 final size:120
Alignment explanation
Indices: 20910946--20911208 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 120
20910936 TTGAATGCTG
* *
20910946 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
20911010 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
20911066 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * * * *
20911129 TCGTGCGAGTTGTTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
20911185 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
20911209 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
119 38 0.32
120 73 0.61
121 9 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:20911228 original size:79 final size:80
Alignment explanation
Indices: 20910999--20911243 Score: 228
Period size: 80 Copynumber: 3.1 Consensus size: 80
20910989 GGACTAAGAT
* * * * * * * ** *
20910999 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGA-GATAC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGA-GC
20911062 TAAATCCGGGTTAAGTC
64 TAAATCCGGGTTAAGTC
* * * ** ** *
20911079 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
20911144 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
20911159 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
20911223 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
20911237 CCGAAGG
1 CCGAAGG
20911244 TACGTGATTT
Statistics
Matches: 138, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
78 14 0.10
79 46 0.33
80 75 0.54
81 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:20913757 original size:40 final size:40
Alignment explanation
Indices: 20913710--20913804 Score: 115
Period size: 40 Copynumber: 2.4 Consensus size: 40
20913700 CTCGATATCA
20913710 CACACTTAGTGCCTCA-TATAGCCGAAGCT-ATTCCAATTCG
1 CACACTTAGTGCCT-ATTATAGCCGAAGCTGATTCCAA-TCG
* **
20913750 CACACTTAGTG-CTATTTATAGCCGAAGCTGTTTTGAATCG
1 CACACTTAGTGCCTA-TTATAGCCGAAGCTGATTCCAATCG
20913790 CACACTTAGTGCCTA
1 CACACTTAGTGCCTA
20913805 ACATAGTCGA
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
38 1 0.02
39 2 0.04
40 38 0.79
41 7 0.15
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (40 bp):
CACACTTAGTGCCTATTATAGCCGAAGCTGATTCCAATCG
Found at i:20937363 original size:27 final size:26
Alignment explanation
Indices: 20937333--20937431 Score: 83
Period size: 27 Copynumber: 3.7 Consensus size: 26
20937323 GGTGGCTATA
*
20937333 CCACAATTATCTGATCT-AGTGGTTCTG
1 CCAC-ATTATCTGATCTGA-TGGCTCTG
*
20937360 CCACATATATCTGCTCTGATGGCTCTG
1 CCACAT-TATCTGATCTGATGGCTCTG
* * *
20937387 CCACGATTATCTGTATCTGGTGACTCGG
1 CCAC-ATTATCTG-ATCTGATGGCTCTG
* *
20937415 TCACATTATCTGTTCTG
1 CCACATTATCTGATCTG
20937432 GCAGCCATGC
Statistics
Matches: 60, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
26 6 0.10
27 38 0.63
28 16 0.27
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.36
Consensus pattern (26 bp):
CCACATTATCTGATCTGATGGCTCTG
Found at i:20942161 original size:19 final size:19
Alignment explanation
Indices: 20942137--20942175 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
20942127 TTAAGCGAGA
20942137 AGTAATGGAGTTTGTAGGG
1 AGTAATGGAGTTTGTAGGG
*
20942156 AGTAATGGAGTTTTTAGGG
1 AGTAATGGAGTTTGTAGGG
20942175 A
1 A
20942176 AATGTCTGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.38, T:0.33
Consensus pattern (19 bp):
AGTAATGGAGTTTGTAGGG
Found at i:20945233 original size:27 final size:26
Alignment explanation
Indices: 20945193--20945298 Score: 122
Period size: 27 Copynumber: 3.9 Consensus size: 26
20945183 AGGAAGCGTC
*
20945193 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
20945220 TTGGTGGCTCTGCCACATATATCTGCT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
20945247 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
20945275 CTGGTGACTCTGTCATATTATCTG
1 CTGGTGGCTCTGCCACATTATCTG
20945299 TCCTGGCAGC
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.03
27 50 0.74
28 16 0.24
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:20948073 original size:58 final size:57
Alignment explanation
Indices: 20947966--20948074 Score: 139
Period size: 58 Copynumber: 1.9 Consensus size: 57
20947956 TCCTGTTTCC
* * *
20947966 AACATATGCTCATAAGAGCTTAATTAGGATTACCCGTCTGGGCTAAATCCTATCTAT
1 AACATATGCTCATAAGAGCTTAATCAGGATTACCAGTCTAGGCTAAATCCTATCTAT
* * *
20948023 AACATATGCTCA-AGAGGGTTTAAATCAGGATTACTAGTCTAGGCTAAATCCT
1 AACATATGCTCATA-AGAGCTT-AATCAGGATTACCAGTCTAGGCTAAATCCT
20948075 TTCTGTAATG
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
56 1 0.02
57 17 0.39
58 26 0.59
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.30
Consensus pattern (57 bp):
AACATATGCTCATAAGAGCTTAATCAGGATTACCAGTCTAGGCTAAATCCTATCTAT
Found at i:20951131 original size:15 final size:16
Alignment explanation
Indices: 20951107--20951150 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 16
20951097 CAAACCTATC
20951107 TGTG-AACCCTT-GCA
1 TGTGAAACCCTTAGCA
*
20951121 TGTGAAACCCTTTAGTA
1 TGTGAAACCC-TTAGCA
20951138 TGTGAAACCCTTA
1 TGTGAAACCCTTA
20951151 CATTCGAACA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
14 4 0.15
15 5 0.19
16 5 0.19
17 12 0.46
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (16 bp):
TGTGAAACCCTTAGCA
Found at i:20953233 original size:21 final size:19
Alignment explanation
Indices: 20953208--20953248 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
20953198 CTATTCCTTC
*
20953208 ATCACCAACAAGTCTATTATA
1 ATCACCAA-AAGT-TATCATA
20953229 ATCACCAAAAGTTATCATA
1 ATCACCAAAAGTTATCATA
20953248 A
1 A
20953249 GTGGGTTTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
20 4 0.21
21 8 0.42
ACGTcount: A:0.46, C:0.22, G:0.05, T:0.27
Consensus pattern (19 bp):
ATCACCAAAAGTTATCATA
Found at i:20956290 original size:14 final size:15
Alignment explanation
Indices: 20956273--20956306 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
20956263 ATTAAAAACT
20956273 ATAAAACAAAAT-AA
1 ATAAAACAAAATAAA
*
20956287 ATAAAATAAAATAAA
1 ATAAAACAAAATAAA
20956302 ATAAA
1 ATAAA
20956307 GTTCTAATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (15 bp):
ATAAAACAAAATAAA
Found at i:20956293 original size:5 final size:5
Alignment explanation
Indices: 20956273--20956306 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
20956263 ATTAAAAACT
*
20956273 ATAAA ACAAA AT-AA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
20956307 GTTCTAATGC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (5 bp):
ATAAA
Found at i:20959129 original size:48 final size:48
Alignment explanation
Indices: 20959071--20959298 Score: 225
Period size: 48 Copynumber: 4.9 Consensus size: 48
20959061 CACATGGTAG
* * * *
20959071 GATGCCAATGCCATATCCCGGATATGGTCTTACATGGGACCAAATATA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAAATATA
* ** * *
20959119 GATGCAAATGCCATGTCCCAGACATGGTCTTACATGGGATCGTAGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAAATATA
* *
20959167 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAAATATA
* * ** * * *
20959215 GATGCTAAT---A-G-CCCAG-CTATGGTCTTACACGAAATTACATATC
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCAAATATA
* *
20959258 GATGCCAAAGCCATGTCCCAGACATGGTTTTACATGGGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
20959299 GTACATAACC
Statistics
Matches: 146, Mismatches: 27, Indels: 14
0.78 0.14 0.07
Matches are distributed among these distances:
42 1 0.01
43 32 0.22
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 108 0.74
49 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAAATATA
Found at i:20960798 original size:22 final size:22
Alignment explanation
Indices: 20960772--20960815 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
20960762 GAAAATGATC
*
20960772 AAAATTAATCAAAATTTATTAT
1 AAAATTAATCAAAATTCATTAT
* *
20960794 AAAATTATTTAAAATTCATTAT
1 AAAATTAATCAAAATTCATTAT
20960816 GTTAATAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAATTAATCAAAATTCATTAT
Found at i:20961276 original size:33 final size:33
Alignment explanation
Indices: 20961229--20961296 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
20961219 ACCATTAAGT
20961229 TTAACTTATGCCTTCATATGTTGAATATAGCAA
1 TTAACTTATGCCTTCATATGTTGAATATAGCAA
* *
20961262 TTAACTTATTCCTTCATATGTTGAATATAGTAA
1 TTAACTTATGCCTTCATATGTTGAATATAGCAA
20961295 TT
1 TT
20961297 TCTCTCCACT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.44
Consensus pattern (33 bp):
TTAACTTATGCCTTCATATGTTGAATATAGCAA
Found at i:20961540 original size:5 final size:5
Alignment explanation
Indices: 20961516--20961554 Score: 51
Period size: 5 Copynumber: 7.4 Consensus size: 5
20961506 GTATATATGC
*
20961516 TCTTT TTTTGT TCTTTT TCTTT TCTTT TCTTT TCTTT TC
1 TCTTT TCTT-T TC-TTT TCTTT TCTTT TCTTT TCTTT TC
20961555 ATGAGCATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
5 23 0.77
6 5 0.17
7 2 0.07
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (5 bp):
TCTTT
Found at i:20969901 original size:22 final size:22
Alignment explanation
Indices: 20969876--20969919 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
20969866 GTAAATGATC
*
20969876 AAAATTAATCAAAATTTATTAT
1 AAAATTAATCAAAATTAATTAT
* *
20969898 AAAATTATTTAAAATTAATTAT
1 AAAATTAATCAAAATTAATTAT
20969920 GTTAATAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAATTAATCAAAATTAATTAT
Found at i:20971998 original size:25 final size:25
Alignment explanation
Indices: 20971925--20972000 Score: 80
Period size: 25 Copynumber: 3.0 Consensus size: 25
20971915 TTTTTAATCC
* *
20971925 CAATTTTACACCAACAAAATTTTGA
1 CAATTTTACCCCAATAAAATTTTGA
***
20971950 CAATTTTATCCTTGATAAAATTTTGA
1 CAATTTTA-CCCCAATAAAATTTTGA
**
20971976 TGATTTTACCCCAATAAAATTTTGA
1 CAATTTTACCCCAATAAAATTTTGA
20972001 GAAAACTCAT
Statistics
Matches: 40, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
25 22 0.55
26 18 0.45
ACGTcount: A:0.38, C:0.16, G:0.07, T:0.39
Consensus pattern (25 bp):
CAATTTTACCCCAATAAAATTTTGA
Found at i:20977610 original size:147 final size:147
Alignment explanation
Indices: 20977343--20977626 Score: 480
Period size: 147 Copynumber: 1.9 Consensus size: 147
20977333 AATTGATGGA
*
20977343 ATATGTATGTATGTGTGCTTATGTTAATAAATAAGACCGATAAGTTTATTTTCCATTATACGAAC
1 ATATGTATGTATCTGTGCTTATGTTAATAAATAAGACCGATAAGTTTATTTTCCATTATACGAAC
*
20977408 TTACTAAGCATAAAATGCTTACTCCATTTATTTTTCCCTGTTTTATAATGCTCAAAGCTCACGAA
66 TTACTAAGCATAAAATGCTTACTCCATTTATTTTTCCCTGTTTTATAATGCTCAAAGCTCACAAA
20977473 GGTTGGATGTCAGTCGG
131 GGTTGGATGTCAGTCGG
* * * *
20977490 ATATGTATGTATCTGTGCTTGTGTTAATAAATAAGGCC-AGTAAGTTTATTTTCCGTTATATGAA
1 ATATGTATGTATCTGTGCTTATGTTAATAAATAAGACCGA-TAAGTTTATTTTCCATTATACGAA
* *
20977554 CTTACTAAGCATAAAATGCTTACTCCATTTATTTTTCCCTGTTTTATAGTGCTCAAAGCTCGCAA
65 CTTACTAAGCATAAAATGCTTACTCCATTTATTTTTCCCTGTTTTATAATGCTCAAAGCTCACAA
20977619 AGGTTGGA
130 AGGTTGGA
20977627 AGTTGGTCGG
Statistics
Matches: 128, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
146 1 0.01
147 127 0.99
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (147 bp):
ATATGTATGTATCTGTGCTTATGTTAATAAATAAGACCGATAAGTTTATTTTCCATTATACGAAC
TTACTAAGCATAAAATGCTTACTCCATTTATTTTTCCCTGTTTTATAATGCTCAAAGCTCACAAA
GGTTGGATGTCAGTCGG
Found at i:20984614 original size:6 final size:6
Alignment explanation
Indices: 20984605--20984653 Score: 55
Period size: 6 Copynumber: 8.0 Consensus size: 6
20984595 AATCAGGTGA
* *
20984605 CAGAAT CAGAAT CAGAAT CAGTAT CAGGTAA- CAGAAT CAAAAT CAGAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT
20984654 GTGAATGCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
5 2 0.06
6 30 0.83
7 3 0.08
8 1 0.03
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.18
Consensus pattern (6 bp):
CAGAAT
Found at i:20984820 original size:27 final size:26
Alignment explanation
Indices: 20984772--20984831 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
20984762 GCAACTCTGC
*
20984772 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
20984799 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
20984825 CAGATAT
1 CAGATAT
20984832 GTATACATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:20985134 original size:27 final size:27
Alignment explanation
Indices: 20985104--20985323 Score: 314
Period size: 27 Copynumber: 8.1 Consensus size: 27
20985094 GGGGTAAAAT
* * * *
20985104 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
20985131 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
20985158 AGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
20985185 GGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
20985212 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
20985239 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
20985266 GGTAATTCTACCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
20985293 AGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
20985320 GGTA
1 GGTA
20985324 TTTTCACAAA
Statistics
Matches: 171, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 171 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:20985190 original size:81 final size:80
Alignment explanation
Indices: 20985104--20985379 Score: 315
Period size: 81 Copynumber: 3.4 Consensus size: 80
20985094 GGGGTAAAAT
* * * *
20985104 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT-ATTTTAC
20985169 CCTACAGGGGTATTTC
65 CCTACAGGGGTATTTC
* * *
20985185 GGTAATTCTACCTTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTT-TAC
*
20985250 CCTACAAGGGTATTTC
65 CCTACAGGGGTATTTC
* * *
20985266 GGTAATTCTACCCTAC-AGAGGTATTTCAGTAATTCTACCCTATAGGGGTATTTTGGTATTTT-C
1 GGTAATTCTACCCTACAAG-GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTTAC
** *
20985329 ACAAACTAGTGGTATTTC
65 -CCTAC-AGGGGTATTTC
* ** * *
20985347 GGTAATTTTA-CAAACTAGGGTATTTTGGTAATT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATT
20985380 TTACAAACTA
Statistics
Matches: 167, Mismatches: 23, Indels: 11
0.83 0.11 0.05
Matches are distributed among these distances:
79 1 0.01
80 25 0.15
81 141 0.84
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (80 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTTACC
CTACAGGGGTATTTC
Found at i:20985343 original size:54 final size:54
Alignment explanation
Indices: 20985108--20985353 Score: 268
Period size: 54 Copynumber: 4.6 Consensus size: 54
20985098 TAAAATGGTA
* * * * *
20985108 ATTTT-ACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGT
1 ATTTTCACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGT
*
20985161 AATTTT-ACCCTACAGGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTCGGT
1 -ATTTTCACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGT
* * * *
20985215 A-ATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGT
1 ATTTTC-ACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGT
* * * *
20985269 A-ATTCTACCCTACAGAGGTATTTCAGTAATTCTACCCTATAGGGGTATTTTGGT
1 ATTTTC-ACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGT
** *
20985323 ATTTTCA-CAAACTAGTGGTATTTCGGTAATT
1 ATTTTCACCCTAC-AGGGGTATTTCGGTAATT
20985354 TTACAAACTA
Statistics
Matches: 166, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
52 2 0.01
53 4 0.02
54 157 0.95
55 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (54 bp):
ATTTTCACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGT
Found at i:20985417 original size:27 final size:26
Alignment explanation
Indices: 20985311--20985407 Score: 151
Period size: 27 Copynumber: 3.7 Consensus size: 26
20985301 TACCCTATAG
20985311 GGGTATTTTGGT-ATTTTCACAAACTA
1 GGGTATTTTGGTAATTTT-ACAAACTA
*
20985337 GTGGTATTTCGGTAATTTTACAAACTA
1 G-GGTATTTTGGTAATTTTACAAACTA
20985364 GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACT-A
20985391 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
20985408 GGTAAACTAA
Statistics
Matches: 66, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
26 24 0.36
27 37 0.56
28 5 0.08
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.43
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACTA
Found at i:20985423 original size:53 final size:53
Alignment explanation
Indices: 20985313--20985423 Score: 136
Period size: 53 Copynumber: 2.1 Consensus size: 53
20985303 CCCTATAGGG
* **
20985313 GTATTTTGGTATTTTCACAAACTAGTGGTATTTCGGTAATTTTACAAACTAGG
1 GTATTTTGGTATTTTCACAAACTAGTGGTATTTCGGTAATTTGACAAACTAAA
* **
20985366 GTATTTTGGTAATTTT-ACAAACTAAG-GGTATTTTGGTAATTTGGTAAACTAAA
1 GTATTTTGGT-ATTTTCACAAACT-AGTGGTATTTCGGTAATTTGACAAACTAAA
20985419 GTATT
1 GTATT
20985424 CTAAACAGGG
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
53 43 0.86
54 7 0.14
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (53 bp):
GTATTTTGGTATTTTCACAAACTAGTGGTATTTCGGTAATTTGACAAACTAAA
Found at i:20987376 original size:49 final size:49
Alignment explanation
Indices: 20987312--20987543 Score: 239
Period size: 49 Copynumber: 4.7 Consensus size: 49
20987302 CTGGTACGCA
* * *
20987312 TAGTAGCCTACACTTAGAACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
* ** ** * *
20987361 TAGTAGCCTGCACTTAGTACCACACACATGACCTAACAATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AATTATCCGGTACACG
* * * * *
20987411 TAGTAGCCTGCACTTAGAACTACATATGTGATCCAAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCGGTACACG
** * **
20987462 TAGTAGAGTGCAATTAGTACTACACATGCAACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
* *
20987511 TAGTAGCCTGTACTTAGTACTACAAATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
20987544 TCACAATAGA
Statistics
Matches: 142, Mismatches: 38, Indels: 6
0.76 0.20 0.03
Matches are distributed among these distances:
49 64 0.45
50 44 0.31
51 34 0.24
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
Found at i:20987819 original size:27 final size:27
Alignment explanation
Indices: 20987789--20987841 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
20987779 CATACAACCT
* *
20987789 ATGTAATAGTAATTTAACATTCAATTC
1 ATGTAACAATAATTTAACATTCAATTC
**
20987816 ATGTAACAATAATTTGCCATTCAATT
1 ATGTAACAATAATTTAACATTCAATT
20987842 TCACATGACA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.40
Consensus pattern (27 bp):
ATGTAACAATAATTTAACATTCAATTC
Found at i:20992640 original size:49 final size:50
Alignment explanation
Indices: 20992333--20992695 Score: 172
Period size: 46 Copynumber: 7.7 Consensus size: 50
20992323 ATTTGTGCAC
* * *
20992333 CAGTGTAAGA-CATTTCTGGGACAT-GCATCGGC-CAC-AT-TATGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGATATGTGAGAGT
* ** ** * *
20992379 CAGTGTAAGACCATGTTTGCTACATGGCATCGGCATTGAGA--CGAGAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATGTGAGAGT
* * ** * *
20992426 CTAGTGCAAGA-CATGTCTAGGACAT-GCATTAGC-CTCGAGATGT-A-AGC
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGATATGTGAGAGT
* * *
20992473 CAGTGTAAGA-CATGTCTGAGACAT-GCATCGGCTA-CAAGATGT----GT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACCGATATGTGAGAGT
*
20992517 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGAGAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATGTGAGAGT
* ** * *
20992566 CTAGTGTAAGATCATGTCTCAGACATGGCGTCGGC-CTCGAT-T-TCGATAGT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGATATGT-GAGAGT
* * * *
20992616 CAGTGTAAGACCATGTTTGGGACATGACATC-G-A-C-TTGATG-GATGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGAT-ATGTGA-GAGT
*
20992663 CAGTGTAAGACCATGTCTGAGACATGGCATCGG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGG
20992696 TATTATACCC
Statistics
Matches: 241, Mismatches: 47, Indels: 56
0.70 0.14 0.16
Matches are distributed among these distances:
44 11 0.05
45 15 0.06
46 71 0.29
47 54 0.22
48 24 0.10
49 32 0.13
50 34 0.14
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (50 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATGTGAGAGT
Found at i:21007132 original size:9 final size:9
Alignment explanation
Indices: 21007118--21007142 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
21007108 CCAAGTTTTG
21007118 CAATTTATT
1 CAATTTATT
21007127 CAATTTATT
1 CAATTTATT
21007136 CAATTTA
1 CAATTTA
21007143 GTCCCTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.36, C:0.12, G:0.00, T:0.52
Consensus pattern (9 bp):
CAATTTATT
Found at i:21010114 original size:56 final size:56
Alignment explanation
Indices: 21010047--21010201 Score: 247
Period size: 56 Copynumber: 2.8 Consensus size: 56
21010037 AGTAAGACCA
* *
21010047 TGGCATCGATATGTGACTCCAATATATGTGTGCGAGTAAGACCAGGTTTTATATGT
1 TGGCATCGATATGTGACTCCGATATATGTGTGTGAGTAAGACCAGGTTTTATATGT
* * * *
21010103 TGGCATTGATATGTGACTCCGATATATGTGTGTGAGTAAGACCATGTTTTCTATTT
1 TGGCATCGATATGTGACTCCGATATATGTGTGTGAGTAAGACCAGGTTTTATATGT
*
21010159 TGGCATCGATATGTGACTCTGATATATGTGTGTGAGTAAGACC
1 TGGCATCGATATGTGACTCCGATATATGTGTGTGAGTAAGACC
21010202 CTATCTGGGA
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 91 1.00
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36
Consensus pattern (56 bp):
TGGCATCGATATGTGACTCCGATATATGTGTGTGAGTAAGACCAGGTTTTATATGT
Found at i:21010219 original size:56 final size:56
Alignment explanation
Indices: 21010047--21010230 Score: 174
Period size: 56 Copynumber: 3.3 Consensus size: 56
21010037 AGTAAGACCA
* * ** ** *
21010047 TGGCATCGATATGTGACTCCAATATATGTGTGCGAGTAAGACCAGGT-T-TTATATG
1 TGGCATCGATATGTGACTCCGATATATGTGTGTGAGTAAGACCATATCTGCGACA-G
* * * * * ***
21010102 TTGGCATTGATATGTGACTCCGATATATGTGTGTGAGTAAGACCATGTTTTCTATTT
1 -TGGCATCGATATGTGACTCCGATATATGTGTGTGAGTAAGACCATATCTGCGACAG
* * *
21010159 TGGCATCGATATGTGACTCTGATATATGTGTGTGAGTAAGACCCTATCTGGGACAG
1 TGGCATCGATATGTGACTCCGATATATGTGTGTGAGTAAGACCATATCTGCGACAG
21010215 TGGCATCGATATGTGA
1 TGGCATCGATATGTGA
21010231 TTACATGTAA
Statistics
Matches: 108, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
56 104 0.96
57 1 0.01
58 3 0.03
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.35
Consensus pattern (56 bp):
TGGCATCGATATGTGACTCCGATATATGTGTGTGAGTAAGACCATATCTGCGACAG
Found at i:21010729 original size:13 final size:13
Alignment explanation
Indices: 21010711--21010738 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
21010701 TTTGAAATGT
21010711 TGGATTTTGGTTA
1 TGGATTTTGGTTA
21010724 TGGATTTTGGTTA
1 TGGATTTTGGTTA
21010737 TG
1 TG
21010739 TATAATCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.00, G:0.32, T:0.54
Consensus pattern (13 bp):
TGGATTTTGGTTA
Found at i:21012940 original size:48 final size:48
Alignment explanation
Indices: 21012887--21013261 Score: 229
Period size: 46 Copynumber: 7.9 Consensus size: 48
21012877 GCCACATTAT
21012887 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC
* * * * *
21012935 GAGAGCTAGTATAAGA-CATGTCTAGGACAT-GCATCGGCCTTGAGAT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC
* * *
21012981 GTA-AGCCAGTGTAAGA-CATGTTTGGGATAT-GCATCGGC-TACGAGAC
1 G-AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGAGAC
* * * * *
21013027 --GTGTCAGTGTAAGACCATGTCTGGGAGATGACATCGGCATAT-ATA-
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGAGAC
* * * * * * *
21013072 GAGGTGCCAGTGTAAGACCATGTCTAGGACATGCCATTGGCA-CGAATATGT
1 GA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG-AGA--C
* * ** * * * * **
21013123 GACAGCTAGTGTAAGACCATGTCTCAGACATGGCGTTGGCCTCGATTTC
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GAC
* * * *
21013172 AATAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGATG--
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GAC
* * *
21013218 GATGAGCCAGTGTAACACCATATCTGGGACATGGCATCGACATT
1 GA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
21013262 ATACCCTATG
Statistics
Matches: 258, Mismatches: 51, Indels: 36
0.75 0.15 0.10
Matches are distributed among these distances:
44 11 0.04
45 13 0.05
46 59 0.23
47 50 0.19
48 57 0.22
49 31 0.12
50 32 0.12
51 5 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC
Found at i:21012979 original size:46 final size:46
Alignment explanation
Indices: 21012848--21013105 Score: 199
Period size: 46 Copynumber: 5.5 Consensus size: 46
21012838 TTTGTGTGCT
* ** *
21012848 AGTGTAAGACATGTCTGGAACATGCATCGGCC-ACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGA-GATGAGAGCC
* * *
21012894 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTTGAGATGAGAGCC
* *
21012942 AGTATAAGACATGTCTAGGACATGCATCGGCCTTGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATG-AGAGCC
* * * *
21012988 AGTGTAAGACATGTTTGGGATATGCATCGG-C-T-ACGA-GACGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGA-GATGA-GAGCC
* * * *
21013032 AGTGTAAGACCATGTCTGGGAGATGACATCGG-CAT-ATATAGAGGTGCC
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCCTTGAGAT-GA-GAGCC
*
21013080 AGTGTAAGACCATGTCTAGGACATGC
1 AGTGTAAGA-CATGTCTGGGACATGC
21013106 CATTGGCACG
Statistics
Matches: 175, Mismatches: 25, Indels: 23
0.78 0.11 0.10
Matches are distributed among these distances:
42 1 0.01
43 2 0.01
44 14 0.08
45 14 0.08
46 61 0.35
47 30 0.17
48 52 0.30
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATGAGAGCC
Found at i:21019226 original size:47 final size:47
Alignment explanation
Indices: 21019173--21019417 Score: 409
Period size: 47 Copynumber: 5.2 Consensus size: 47
21019163 AATTCTAAAT
21019173 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
21019220 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
21019267 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
21019314 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * *
21019362 TGTGATAAGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
21019409 TGTGATAAG
1 TGTGATAAG
21019418 TCCCGAAGGG
Statistics
Matches: 187, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
47 142 0.76
48 45 0.24
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:21019381 original size:95 final size:95
Alignment explanation
Indices: 21019173--21019417 Score: 404
Period size: 95 Copynumber: 2.6 Consensus size: 95
21019163 AATTCTAAAT
21019173 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG-ATAAGGCCTAATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
21019237 GCCGATGTGATGAATGTGAAAGTGTATATA
66 GCCGATGTGATGAATGTGAAAGTGTATATA
*
21019267 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
*
21019332 GCCGATGTGATGAATGTGAAAGTGTATATG
66 GCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * *
21019362 TGTGATAAGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAATGTG-ATAAG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAG
21019418 TCCCGAAGGG
Statistics
Matches: 141, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
94 55 0.39
95 86 0.61
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (95 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
GCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:21019605 original size:37 final size:37
Alignment explanation
Indices: 21019536--21019614 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
21019526 CCGAGTTCTA
* * * *
21019536 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGCGGAGATTATGTCCGGGT
*
21019573 AAGACCCGATAACTTCGTGCGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGCGGAGATTATGTCCGGGT
21019610 AAGAC
1 AAGAC
21019615 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGCGGAGATTATGTCCGGGT
Found at i:21019807 original size:47 final size:47
Alignment explanation
Indices: 21019695--21019896 Score: 278
Period size: 47 Copynumber: 4.3 Consensus size: 47
21019685 GGTGAGCTTG
21019695 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTGTAT
*
21019744 ATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
** *
21019791 ATGCGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * * * * *
21019838 ATATGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
21019885 AAATGTGATAAG
1 ATATGTGATAAG
21019897 TCCCGAAGGG
Statistics
Matches: 137, Mismatches: 16, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
47 97 0.71
49 40 0.29
ACGTcount: A:0.31, C:0.08, G:0.32, T:0.29
Consensus pattern (47 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:21020084 original size:37 final size:37
Alignment explanation
Indices: 21020015--21020093 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
21020005 CCGAGTTCTA
* * * *
21020015 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGCGGAGATTATGTCCGGGT
*
21020052 AAGACCCGATAACTTCGTGCGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGCGGAGATTATGTCCGGGT
21020089 AAGAC
1 AAGAC
21020094 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGCGGAGATTATGTCCGGGT
Found at i:21023351 original size:15 final size:15
Alignment explanation
Indices: 21023314--21023345 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
21023304 CTAAGAGCCC
21023314 TCAAAATTAGCCTTT
1 TCAAAATTAGCCTTT
21023329 TCAAAATTAGCCTTT
1 TCAAAATTAGCCTTT
21023344 TC
1 TC
21023346 TGAATTGGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.41
Consensus pattern (15 bp):
TCAAAATTAGCCTTT
Found at i:21045790 original size:21 final size:22
Alignment explanation
Indices: 21045766--21045806 Score: 59
Period size: 20 Copynumber: 1.9 Consensus size: 22
21045756 ATAATATATA
21045766 AGTGTAAAAAAA-TT-CGAAAAT
1 AGTG-AAAAAAAGTTACGAAAAT
21045787 AGTGAAAAAAAGTTACGAAA
1 AGTGAAAAAAAGTTACGAAA
21045807 TTACAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 6 0.33
22 5 0.28
ACGTcount: A:0.59, C:0.05, G:0.17, T:0.20
Consensus pattern (22 bp):
AGTGAAAAAAAGTTACGAAAAT
Found at i:21046923 original size:6 final size:6
Alignment explanation
Indices: 21046898--21046957 Score: 50
Period size: 6 Copynumber: 10.0 Consensus size: 6
21046888 AAAGAGTGTG
** * *
21046898 AAAGAAA AAAGAA AGTGAA AAAGAA AAAGAG AAGGAA AAAGAA AAA-AA
1 AAAG-AA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
**
21046946 AGTGAA AAAGAA
1 AAAGAA AAAGAA
21046958 TGTGAGAAGA
Statistics
Matches: 40, Mismatches: 12, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
5 3 0.08
6 33 0.82
7 4 0.10
ACGTcount: A:0.75, C:0.00, G:0.22, T:0.03
Consensus pattern (6 bp):
AAAGAA
Found at i:21046926 original size:18 final size:18
Alignment explanation
Indices: 21046898--21046957 Score: 88
Period size: 18 Copynumber: 3.3 Consensus size: 18
21046888 AAAGAGTGTG
21046898 AAAGAAAAAAGAAAGTGAA
1 AAAG-AAAAAGAAAGTGAA
21046917 AAAGAAAAAGAGAAG-GAA
1 AAAGAAAAAGA-AAGTGAA
21046935 AAAGAAAAA-AAAGTGAA
1 AAAGAAAAAGAAAGTGAA
21046952 AAAGAA
1 AAAGAA
21046958 TGTGAGAAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
16 3 0.08
17 10 0.26
18 19 0.49
19 7 0.18
ACGTcount: A:0.75, C:0.00, G:0.22, T:0.03
Consensus pattern (18 bp):
AAAGAAAAAGAAAGTGAA
Found at i:21046965 original size:35 final size:35
Alignment explanation
Indices: 21046898--21046976 Score: 97
Period size: 35 Copynumber: 2.2 Consensus size: 35
21046888 AAAGAGTGTG
21046898 AAAGAAAAAAGAAAGTGAAAAAGAAAAAGAGAAGGAA
1 AAAG-AAAAAGAAAGTGAAAAAGAAAAAGAGAA-GAA
***
21046935 AAAGAAAAA-AAAGTGAAAAAGAATGTGAGAAGAA
1 AAAGAAAAAGAAAGTGAAAAAGAAAAAGAGAAGAA
*
21046969 AAGGAAAA
1 AAAGAAAA
21046977 TTGAAAAAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
34 10 0.26
35 19 0.50
36 5 0.13
37 4 0.11
ACGTcount: A:0.71, C:0.00, G:0.24, T:0.05
Consensus pattern (35 bp):
AAAGAAAAAGAAAGTGAAAAAGAAAAAGAGAAGAA
Found at i:21049959 original size:40 final size:40
Alignment explanation
Indices: 21049858--21050048 Score: 251
Period size: 40 Copynumber: 4.8 Consensus size: 40
21049848 TGGATGATAA
* * * * **
21049858 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
21049898 CCGAGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
21049937 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * *
21049977 TCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
21050017 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
21050049 AGCTATATCC
Statistics
Matches: 134, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
39 32 0.24
40 100 0.75
41 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:21069757 original size:40 final size:40
Alignment explanation
Indices: 21069702--21069836 Score: 191
Period size: 40 Copynumber: 3.4 Consensus size: 40
21069692 TTAGTTACCG
21069702 GGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAA
1 GGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAA
* *
21069742 GGCATTTGCGCGAGTTACTAAATCTGGGCTAAGTCCCGAA
1 GGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAA
* * * *
21069782 GGCAATTGTGCGAGTTACTCTAA-CCGGGCTATGTCCCAAA
1 GGCATTTGTGCGAGTTACT-AAATCCGGGCTAAGTCCCGAA
*
21069822 GGCATTTGAGCGAGT
1 GGCATTTGTGCGAGT
21069837 AGCTATATTC
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
40 82 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAA
Found at i:21076794 original size:27 final size:27
Alignment explanation
Indices: 21076763--21076940 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
21076753 TAAATTGTAC
21076763 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
21076790 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
21076816 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
21076844 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
21076872 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
21076899 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
21076926 AGTACTGAGTGTGCG
1 AGCACTAAGTGTGCG
21076941 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:21076877 original size:82 final size:81
Alignment explanation
Indices: 21076764--21076919 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
21076754 AAATTGTACA
* *
21076764 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
21076828 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
21076845 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
21076910 TGCGAGTTGA
65 TGCGAATTGA
21076920 TTATATAGTA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:21081135 original size:25 final size:25
Alignment explanation
Indices: 21081101--21081154 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
21081091 TGTGCGGTTG
**
21081101 ACACAGCCTTGGACGTAGGCGTGTT
1 ACACAGCCTTGGACACAGGCGTGTT
*
21081126 ACACAGCCTTGGACACGGGCGTGTT
1 ACACAGCCTTGGACACAGGCGTGTT
21081151 ACAC
1 ACAC
21081155 GGCCGTGTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.20
Consensus pattern (25 bp):
ACACAGCCTTGGACACAGGCGTGTT
Found at i:21099409 original size:40 final size:40
Alignment explanation
Indices: 21099354--21099577 Score: 290
Period size: 40 Copynumber: 5.5 Consensus size: 40
21099344 TATTCGGATG
21099354 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
21099394 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
21099437 ATACCCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** *
21099477 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAA-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACT
* * *
21099517 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
21099557 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
21099578 ATACTTGGGT
Statistics
Matches: 160, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
39 14 0.09
40 108 0.68
41 2 0.01
43 36 0.22
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:21099497 original size:83 final size:80
Alignment explanation
Indices: 21099358--21099577 Score: 284
Period size: 83 Copynumber: 2.7 Consensus size: 80
21099348 CGGATGATAT
* **
21099358 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
21099423 TGCGAGTAGTTG-CTATAC
66 TGC---TA-ATGACTATAC
* *
21099441 CCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
21099506 TGCTAATGACTATAT
66 TGCTAATGACTATAC
* * *
21099521 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
21099578 ATACTTGGGT
Statistics
Matches: 124, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
79 16 0.13
80 43 0.35
81 2 0.02
83 63 0.51
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAATGACTATAC
Found at i:21102067 original size:9 final size:8
Alignment explanation
Indices: 21102042--21102066 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
21102032 ACTATCTCTC
21102042 TCTTTTTT
1 TCTTTTTT
21102050 TCTTTTTT
1 TCTTTTTT
21102058 TCTTTTTT
1 TCTTTTTT
21102066 T
1 T
21102067 TTTACTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (8 bp):
TCTTTTTT
Found at i:21114350 original size:25 final size:25
Alignment explanation
Indices: 21114322--21114372 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
21114312 TTATTCAACA
21114322 TGGTATATCATTTCATGCATACATG
1 TGGTATATCATTTCATGCATACATG
21114347 TGGTATATCATTTCATGCATACATG
1 TGGTATATCATTTCATGCATACATG
21114372 T
1 T
21114373 CTATAATCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (25 bp):
TGGTATATCATTTCATGCATACATG
Found at i:21115501 original size:58 final size:56
Alignment explanation
Indices: 21115363--21115503 Score: 140
Period size: 57 Copynumber: 2.4 Consensus size: 56
21115353 ATGTATACAA
** * * *
21115363 CAGGATTACCAGTCCAGGCTAAATCCTTTTTATGACATATGCTCTAAGGAGCTTGAT
1 CAGGATTACC-GTCCAGGCTAAATCCCATCTATAACATATGCTCGAAGGAGCTTGAT
* * * * *
21115420 CTGGATTACACGTTCGGGCTAAATCCCATCTATAACATGTGCTCGAGAGGA-CTTATAT
1 CAGGATTAC-CGTCCAGGCTAAATCCCATCTATAACATATGCTCGA-AGGAGCTT-GAT
21115478 CAGGATTACCTGTCCAGGCTAAATCC
1 CAGGATTACC-GTCCAGGCTAAATCC
21115504 TTGTCTGTAA
Statistics
Matches: 67, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
57 39 0.58
58 28 0.42
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (56 bp):
CAGGATTACCGTCCAGGCTAAATCCCATCTATAACATATGCTCGAAGGAGCTTGAT
Found at i:21118024 original size:9 final size:9
Alignment explanation
Indices: 21118010--21118034 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
21118000 TGCTTGCTGT
21118010 AGAGAAATA
1 AGAGAAATA
21118019 AGAGAAATA
1 AGAGAAATA
21118028 AGAGAAA
1 AGAGAAA
21118035 ATGATGCCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.24, T:0.08
Consensus pattern (9 bp):
AGAGAAATA
Found at i:21118436 original size:21 final size:21
Alignment explanation
Indices: 21118395--21118436 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
21118385 TGAGTCTATT
**
21118395 TTCAAGAGAAACAAATGGAAA
1 TTCAAGAGAAACAAACAGAAA
*
21118416 TTCAAGATAAACAAACAGAAA
1 TTCAAGAGAAACAAACAGAAA
21118437 CATCATCCAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.14, T:0.14
Consensus pattern (21 bp):
TTCAAGAGAAACAAACAGAAA
Found at i:21118812 original size:18 final size:18
Alignment explanation
Indices: 21118789--21118845 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
21118779 CAAGTGGACC
21118789 ACACGGGTGTGTGGGCCT
1 ACACGGGTGTGTGGGCCT
*
21118807 ACACGGGTAG-AT----C-
1 ACACGGGT-GTGTGGGCCT
21118820 ACACGGGTGTGTGGGCCT
1 ACACGGGTGTGTGGGCCT
21118838 ACACGGGT
1 ACACGGGT
21118846 AGATCACATA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 1 0.03
13 9 0.30
14 1 0.03
17 1 0.03
18 17 0.57
19 1 0.03
ACGTcount: A:0.18, C:0.23, G:0.40, T:0.19
Consensus pattern (18 bp):
ACACGGGTGTGTGGGCCT
Found at i:21118825 original size:31 final size:31
Alignment explanation
Indices: 21118788--21118863 Score: 134
Period size: 31 Copynumber: 2.5 Consensus size: 31
21118778 CCAAGTGGAC
21118788 CACACGGGTGTGTGGGCCTACACGGGTAGAT
1 CACACGGGTGTGTGGGCCTACACGGGTAGAT
21118819 CACACGGGTGTGTGGGCCTACACGGGTAGAT
1 CACACGGGTGTGTGGGCCTACACGGGTAGAT
**
21118850 CACATAGGTGTGTG
1 CACACGGGTGTGTG
21118864 AGCCCATTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.20, C:0.21, G:0.38, T:0.21
Consensus pattern (31 bp):
CACACGGGTGTGTGGGCCTACACGGGTAGAT
Found at i:21119237 original size:23 final size:24
Alignment explanation
Indices: 21119211--21119255 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
21119201 ATATCCCAAC
*
21119211 ATGGAGTGTAG-GGTTGGATGGAA
1 ATGGAGTGTAGAGGCTGGATGGAA
*
21119234 ATGGCGTGTAGAGGCTGGATGG
1 ATGGAGTGTAGAGGCTGGATGG
21119256 GTAGGATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.22, C:0.04, G:0.49, T:0.24
Consensus pattern (24 bp):
ATGGAGTGTAGAGGCTGGATGGAA
Found at i:21119375 original size:34 final size:34
Alignment explanation
Indices: 21119329--21119396 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
21119319 GCATTTTTGG
*
21119329 CACTGTACTGAGATGGGCTAAGGCCCAA-ACTGT
1 CACTGTACTGAGAAGGGCTAAGGCCCAAGACTGT
* *
21119362 CACTGATATTGAGAAGGGCTTAGGCCCAAGACTGT
1 CACTG-TACTGAGAAGGGCTAAGGCCCAAGACTGT
21119397 TCAACTATAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 5 0.17
34 20 0.67
35 5 0.17
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (34 bp):
CACTGTACTGAGAAGGGCTAAGGCCCAAGACTGT
Found at i:21138633 original size:17 final size:17
Alignment explanation
Indices: 21138590--21138644 Score: 65
Period size: 17 Copynumber: 3.1 Consensus size: 17
21138580 GTAAATAATA
*
21138590 ATTCAACACTATATTGTAT
1 ATTCAACACTA-ATAG-AT
*
21138609 ATTTAACACTAATAGAT
1 ATTCAACACTAATAGAT
*
21138626 ATTCAACACTAATAAAT
1 ATTCAACACTAATAGAT
21138643 AT
1 AT
21138645 AAACTTTTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
17 19 0.59
18 3 0.09
19 10 0.31
ACGTcount: A:0.45, C:0.15, G:0.04, T:0.36
Consensus pattern (17 bp):
ATTCAACACTAATAGAT
Found at i:21146207 original size:61 final size:60
Alignment explanation
Indices: 21146137--21146314 Score: 161
Period size: 61 Copynumber: 3.0 Consensus size: 60
21146127 TTGTTAAATT
*
21146137 ATATTTAATAATAATAATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGA
1 ATATTTAATAATAATAATTTTATA-TATTATATATTATGATTTTAATAAATTCATATAAGA
* * * * * *
21146198 ATATTTAATACTAAGAATTTTATTAAATTATATATT-T--TTGTTAAATTATATTTA-ATAATA
1 ATATTTAATAATAATAATTTTA-TATATTATATATTATGATT-TT-AA-TAAATTCATATAAGA
* * *
21146258 ATTATTTTA-AATTAT-ATTTTATAATATTATATATTATAATTTTAATAAATTCATATA
1 A-TATTTAATAATAATAATTTTAT-ATATTATATATTATGATTTTAATAAATTCATATA
21146315 TTTTATCAAA
Statistics
Matches: 93, Mismatches: 14, Indels: 21
0.73 0.11 0.16
Matches are distributed among these distances:
58 3 0.03
59 25 0.27
60 17 0.18
61 44 0.47
62 4 0.04
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (60 bp):
ATATTTAATAATAATAATTTTATATATTATATATTATGATTTTAATAAATTCATATAAGA
Found at i:21146267 original size:26 final size:25
Alignment explanation
Indices: 21146229--21146287 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
21146219 ATTAAATTAT
*
21146229 ATATTTTTGTTAAATTATATTTAATA
1 ATATTATT-TTAAATTATATTTAATA
*
21146255 ATAATTATTTTAAATTATATTTTATA
1 AT-ATTATTTTAAATTATATTTAATA
21146281 ATATTAT
1 ATATTAT
21146288 ATATTATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 5 0.17
26 20 0.67
27 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (25 bp):
ATATTATTTTAAATTATATTTAATA
Found at i:21146286 original size:15 final size:15
Alignment explanation
Indices: 21146242--21146297 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
21146232 TTTTTGTTAA
*
21146242 ATTATATTTAATAAT
1 ATTATATTTTATAAT
*
21146257 AAT-TA-TTT-TAA-
1 ATTATATTTTATAAT
21146268 ATTATATTTTATAAT
1 ATTATATTTTATAAT
*
21146283 ATTATATATTATAAT
1 ATTATATTTTATAAT
21146298 TTTAATAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
11 2 0.06
12 5 0.15
13 5 0.15
14 5 0.15
15 16 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTATATTTTATAAT
Found at i:21146313 original size:24 final size:22
Alignment explanation
Indices: 21146268--21146336 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 22
21146258 ATTATTTTAA
21146268 ATTATATTTTATAATATTATAT
1 ATTATATTTTATAATATTATAT
* *
21146290 ATTATAATTT-TAATA-AAT-T
1 ATTATATTTTATAATATTATAT
21146309 CA-TATATTTTATCAA-ATTATAT
1 -ATTATATTTTAT-AATATTATAT
21146331 ATTATA
1 ATTATA
21146337 AAAAAATATA
Statistics
Matches: 37, Mismatches: 4, Indels: 12
0.70 0.08 0.23
Matches are distributed among these distances:
19 8 0.22
20 5 0.14
21 10 0.27
22 14 0.38
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (22 bp):
ATTATATTTTATAATATTATAT
Found at i:21146332 original size:17 final size:17
Alignment explanation
Indices: 21146214--21146354 Score: 61
Period size: 17 Copynumber: 8.6 Consensus size: 17
21146204 AATACTAAGA
*
21146214 ATTTTATTAAATTATAT
1 ATTTTAATAAATTATAT
**
21146231 ATTTTTGTTAAA-T-TAT
1 A-TTTTAATAAATTATAT
*
21146247 A-TTTAAT-AATAAT-T
1 ATTTTAATAAATTATAT
* *
21146261 ATTTTAAATTATATTTTAT
1 ATTTT-AA-TAAATTATAT
* *
21146280 AATATT-ATATATTATA-
1 -ATTTTAATAAATTATAT
21146296 ATTTTAATAAATTCATAT
1 ATTTTAATAAATT-ATAT
21146314 ATTTT-ATCAAATTATAT
1 ATTTTAAT-AAATTATAT
* *
21146331 ATTATAA-AAA-AATAT
1 ATTTTAATAAATTATAT
21146346 A-TTTAATAA
1 ATTTTAATAA
21146355 TAATTATGTT
Statistics
Matches: 95, Mismatches: 14, Indels: 32
0.67 0.10 0.23
Matches are distributed among these distances:
13 2 0.02
14 10 0.11
15 15 0.16
16 15 0.16
17 24 0.25
18 24 0.25
19 1 0.01
20 4 0.04
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (17 bp):
ATTTTAATAAATTATAT
Found at i:21146603 original size:16 final size:16
Alignment explanation
Indices: 21146582--21146649 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
21146572 GATTTGCTAT
21146582 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
* *
21146598 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
21146614 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
21146630 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
21146646 TACA
1 TACA
21146650 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:21149060 original size:36 final size:35
Alignment explanation
Indices: 21149004--21149072 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 35
21148994 ATCCTTGCTG
**
21149004 TTTACTTATTTGAATTGTGTCAAGAATCTTTATGA
1 TTTACTTATTTGAAGGGTGTCAAGAATCTTTATGA
21149039 TTTACTTTATTTGAAGGGTGTCAAGAATCTTTAT
1 TTTAC-TTATTTGAAGGGTGTCAAGAATCTTTAT
21149073 TGTATTTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 5 0.16
36 26 0.84
ACGTcount: A:0.28, C:0.09, G:0.16, T:0.48
Consensus pattern (35 bp):
TTTACTTATTTGAAGGGTGTCAAGAATCTTTATGA
Found at i:21154029 original size:63 final size:63
Alignment explanation
Indices: 21153927--21154046 Score: 213
Period size: 63 Copynumber: 1.9 Consensus size: 63
21153917 CTAAGCCAGT
* *
21153927 AGATTATCCATCAGATCCATTCAGTAAAAAGCCATAAGAAAGAGATTAACCAGGCAAGCTAGC
1 AGATTATCCATCAGATCCATTCAGTAAAAAGCCAAAAGAAAGAGATTAACAAGGCAAGCTAGC
*
21153990 AGATTATCCATCAGATCCATTCAGTAAAAAGCCAAAAGAAAGAGATTTACAAGGCAA
1 AGATTATCCATCAGATCCATTCAGTAAAAAGCCAAAAGAAAGAGATTAACAAGGCAA
21154047 TTTATAGAGA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 54 1.00
ACGTcount: A:0.45, C:0.19, G:0.17, T:0.19
Consensus pattern (63 bp):
AGATTATCCATCAGATCCATTCAGTAAAAAGCCAAAAGAAAGAGATTAACAAGGCAAGCTAGC
Found at i:21155455 original size:25 final size:25
Alignment explanation
Indices: 21155423--21155472 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
21155413 TCACTTTCCT
21155423 TTCCTTAGCTTTTCCCTCAAATTGG
1 TTCCTTAGCTTTTCCCTCAAATTGG
21155448 TTCCTTAGCTTTTCCCTCAAATTGG
1 TTCCTTAGCTTTTCCCTCAAATTGG
21155473 GGTAAATAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.16, C:0.28, G:0.12, T:0.44
Consensus pattern (25 bp):
TTCCTTAGCTTTTCCCTCAAATTGG
Found at i:21160262 original size:28 final size:29
Alignment explanation
Indices: 21160210--21160265 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
21160200 TTAATATTAT
* *
21160210 TTAATTTATTTTAATATTAAAAAAATAAA
1 TTAATCTATTTTAATAATAAAAAAATAAA
*
21160239 TTAATCTA-TTTAATAATAATAAAATAA
1 TTAATCTATTTTAATAATAAAAAAATAA
21160266 TTTAGTTAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 17 0.71
29 7 0.29
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (29 bp):
TTAATCTATTTTAATAATAAAAAAATAAA
Found at i:21160841 original size:24 final size:25
Alignment explanation
Indices: 21160785--21160841 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 25
21160775 CTTACGAAAT
*
21160785 AATTAAAGAATATAAAAAATTGATT
1 AATTAAAGAATATAAAAAATTGATC
*
21160810 AA-AAAAGAATATAAAAAATT-ATC
1 AATTAAAGAATATAAAAAATTGATC
*
21160833 AATTTAAGA
1 AATTAAAGA
21160842 TTTAGTAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 4 0.15
24 21 0.78
25 2 0.07
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (25 bp):
AATTAAAGAATATAAAAAATTGATC
Found at i:21160922 original size:32 final size:32
Alignment explanation
Indices: 21160886--21160950 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
21160876 TTAATAATGT
21160886 TAAAAATAATTATAACTAATCTATTTAAGACG
1 TAAAAATAATTATAACTAATCTATTTAAGACG
21160918 TAAAAATAATTATAACTAATCTATTTAAGACG
1 TAAAAATAATTATAACTAATCTATTTAAGACG
21160950 T
1 T
21160951 CATTCTTTCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.49, C:0.09, G:0.06, T:0.35
Consensus pattern (32 bp):
TAAAAATAATTATAACTAATCTATTTAAGACG
Found at i:21164281 original size:22 final size:22
Alignment explanation
Indices: 21164256--21164308 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
21164246 GCGTAGCAGG
21164256 CTTAGTGCCGGTGTTATTCAAA
1 CTTAGTGCCGGTGTTATTCAAA
* ** **
21164278 CTTATTTTCGGTGTTATTCAGG
1 CTTAGTGCCGGTGTTATTCAAA
21164300 CTTAGTGCC
1 CTTAGTGCC
21164309 TAGCAAGCTT
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.17, C:0.19, G:0.23, T:0.42
Consensus pattern (22 bp):
CTTAGTGCCGGTGTTATTCAAA
Found at i:21164366 original size:22 final size:22
Alignment explanation
Indices: 21164341--21164384 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
21164331 ATTCAGGATT
21164341 AGTGCCTA-GTAGGCTTAGTGCC
1 AGTG-CTATGTAGGCTTAGTGCC
* *
21164363 AGTGTTATTTAGGCTTAGTGCC
1 AGTGCTATGTAGGCTTAGTGCC
21164385 TAGCAGGCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.18, C:0.18, G:0.30, T:0.34
Consensus pattern (22 bp):
AGTGCTATGTAGGCTTAGTGCC
Found at i:21164406 original size:38 final size:38
Alignment explanation
Indices: 21164288--21164417 Score: 179
Period size: 38 Copynumber: 3.4 Consensus size: 38
21164278 CTTATTTTCG
*
21164288 GTGTTATTCAGGCTTAGTGCCTAGCAAGCTTAGTGCCA
1 GTGTTATTCAGGCTTAGTGCCTAGCAGGCTTAGTGCCA
* * *
21164326 ATGTTATTCAGGATTAGTGCCTAGTAGGCTTAGTGCCA
1 GTGTTATTCAGGCTTAGTGCCTAGCAGGCTTAGTGCCA
* * *
21164364 GTGTTATTTAGGCTTAGTGCCTAGCAGGCTTAGTACCG
1 GTGTTATTCAGGCTTAGTGCCTAGCAGGCTTAGTGCCA
* *
21164402 GTGTTTTTCAGACTTA
1 GTGTTATTCAGGCTTA
21164418 TTACCGGTGT
Statistics
Matches: 79, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 79 1.00
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (38 bp):
GTGTTATTCAGGCTTAGTGCCTAGCAGGCTTAGTGCCA
Found at i:21165768 original size:42 final size:43
Alignment explanation
Indices: 21165650--21165816 Score: 130
Period size: 43 Copynumber: 3.9 Consensus size: 43
21165640 TAAACGTTGT
* * *
21165650 CATCGAT-CTGAGA-TATCATGTAAGACCGTGTCTGGGACACAGG
1 CATCGATACTGA-ATTA-CATGTAAGACCCTGTCTGGGACAGAGA
* * * * * **
21165693 CCTTGAT-TTGAGATTTACGTGTAAGACCATGTCTGGGACATCGA
1 CATCGATACTGA-A-TTACATGTAAGACCCTGTCTGGGACAGAGA
* *
21165737 CATCG-TATCTGAATT-CATGTAAGACCCTGTCTGGAACAGAGG
1 CATCGATA-CTGAATTACATGTAAGACCCTGTCTGGGACAGAGA
21165779 CATCGATACTGAATTACATGTAAGACCAC-GTCTGGGAC
1 CATCGATACTGAATTACATGTAAGACC-CTGTCTGGGAC
21165817 GTAGGTATTG
Statistics
Matches: 99, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
42 33 0.33
43 34 0.34
44 27 0.27
45 5 0.05
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (43 bp):
CATCGATACTGAATTACATGTAAGACCCTGTCTGGGACAGAGA
Found at i:21165812 original size:43 final size:43
Alignment explanation
Indices: 21165707--21165813 Score: 121
Period size: 42 Copynumber: 2.5 Consensus size: 43
21165697 GATTTGAGAT
* * * **
21165707 TTACGTGTAAGACCATGTCTGGGACATCGACATCGTATCTGAA
1 TTACATGTAAGACCACGTCTGGAACAGAGACATCGTATCTGAA
*
21165750 TT-CATGTAAGACC-CTGTCTGGAACAGAGGCATCG-ATACTGAA
1 TTACATGTAAGACCAC-GTCTGGAACAGAGACATCGTAT-CTGAA
21165792 TTACATGTAAGACCACGTCTGG
1 TTACATGTAAGACCACGTCTGG
21165814 GACGTAGGTA
Statistics
Matches: 54, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
41 2 0.04
42 32 0.59
43 19 0.35
44 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26
Consensus pattern (43 bp):
TTACATGTAAGACCACGTCTGGAACAGAGACATCGTATCTGAA
Found at i:21166099 original size:32 final size:32
Alignment explanation
Indices: 21166062--21166128 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
21166052 TGAACTATTC
21166062 TGTGAAATGACTATGAATTCTTGCTGTTGATT
1 TGTGAAATGACTATGAATTCTTGCTGTTGATT
*
21166094 TGTGAAATGGCTATGAATTCTTGCTGTTGATT
1 TGTGAAATGACTATGAATTCTTGCTGTTGATT
21166126 TGT
1 TGT
21166129 ACTTTATATG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.22, C:0.09, G:0.24, T:0.45
Consensus pattern (32 bp):
TGTGAAATGACTATGAATTCTTGCTGTTGATT
Found at i:21168068 original size:12 final size:12
Alignment explanation
Indices: 21168034--21168072 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
21168024 TCAGAGGGTT
*
21168034 ACATGGCCTAAC
1 ACATGGCCTAGC
* *
21168046 ACACGGTCTAGC
1 ACATGGCCTAGC
21168058 ACATGGCCTAGC
1 ACATGGCCTAGC
21168070 ACA
1 ACA
21168073 CAAGCATGTA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.31, C:0.33, G:0.21, T:0.15
Consensus pattern (12 bp):
ACATGGCCTAGC
Found at i:21173905 original size:15 final size:16
Alignment explanation
Indices: 21173885--21173914 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
21173875 TGGTGCCTTG
21173885 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
21173900 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
21173915 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:21178816 original size:21 final size:22
Alignment explanation
Indices: 21178774--21178816 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
21178764 ATTGAAATGA
* *
21178774 TAATTTTATTTTTTTATGATAT
1 TAATTTTATTATTTAATGATAT
21178796 TAATTTTATTATTTAAT-ATAT
1 TAATTTTATTATTTAATGATAT
21178817 AAGCTAAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (22 bp):
TAATTTTATTATTTAATGATAT
Found at i:21182496 original size:16 final size:17
Alignment explanation
Indices: 21182475--21182512 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
21182465 AATTTAAAAA
21182475 AAAACAAA-ACAAGCCC
1 AAAACAAATACAAGCCC
*
21182491 AAAACAAATTACAATCCC
1 AAAACAAA-TACAAGCCC
21182509 AAAA
1 AAAA
21182513 GTCCAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
18 11 0.58
ACGTcount: A:0.63, C:0.26, G:0.03, T:0.08
Consensus pattern (17 bp):
AAAACAAATACAAGCCC
Found at i:21188477 original size:25 final size:25
Alignment explanation
Indices: 21188423--21188484 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
21188413 ACGTTAGCAC
*
21188423 GCTCTCTGATTAATAGCATGATAGT
1 GCTCTCTGATTAATAGCACGATAGT
* *
21188448 CCTCTCTGATTATTAGCACG-TCAGT
1 GCTCTCTGATTAATAGCACGAT-AGT
*
21188473 GCTCTCCGATTA
1 GCTCTCTGATTA
21188485 GTACATTTGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 1 0.03
25 30 0.97
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (25 bp):
GCTCTCTGATTAATAGCACGATAGT
Found at i:21197364 original size:28 final size:28
Alignment explanation
Indices: 21197297--21197366 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
21197287 TGGCAGCAGA
21197297 TAACACACATTAAAAACATGTATTAAAC
1 TAACACACATTAAAAACATGTATTAAAC
* *
21197325 TACCACACATTAATAACATGTATTAAAC
1 TAACACACATTAAAAACATGTATTAAAC
* *
21197353 TAAGACATATTAAA
1 TAACACACATTAAA
21197367 CACTTTAATT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.51, C:0.17, G:0.04, T:0.27
Consensus pattern (28 bp):
TAACACACATTAAAAACATGTATTAAAC
Found at i:21212192 original size:40 final size:39
Alignment explanation
Indices: 21212135--21212319 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 39
21212125 TTGAATGATG
*
21212135 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTAAA
* *
21212175 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTAAA
*
21212215 TCCGGGCTAAG-CTCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAA
*
21212254 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTA-AA
* *
21212295 -CCGGGCTATGCCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
21212320 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 34 0.27
40 82 0.65
41 11 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAAA
Found at i:21212271 original size:79 final size:81
Alignment explanation
Indices: 21212135--21212319 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
21212125 TTGAATGATG
*
21212135 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGCCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
21212199 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
21212214 TTCCGGGCTAAG-CTCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGCCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
*
21212276 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
21212294 ACCGGGCTATGCCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCCGAAGGCATTTG
21212320 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.64
80 32 0.35
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGCCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:21212341 original size:79 final size:79
Alignment explanation
Indices: 21212136--21212352 Score: 192
Period size: 79 Copynumber: 2.7 Consensus size: 79
21212126 TGAATGATGT
** * * * **
21212136 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTTACCAAATCCGGGTTAA-ATCCCGAAGGCATT
*
21212199 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
* ** * *
21212216 CCGGGCTAAGCTCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACCAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
21212281 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
21212295 CCGGGCTATGCCCCGAAGGCATTTGAACGAG-TAGCCATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CCAAATCCGGGTTAAATCCCGAAGG
21212353 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 73 0.63
80 40 0.34
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACCAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:21217803 original size:48 final size:48
Alignment explanation
Indices: 21217662--21217945 Score: 200
Period size: 48 Copynumber: 5.9 Consensus size: 48
21217652 ACAGCCCACC
* * * * *
21217662 TATGGTCTTACACGA-AGTCTCATAAT-GGTACCGATGCCATGTCCTAGA
1 TATGGTCTTACATGAGA-TCTCAT-ATCGATGCCGATGCCATATCCCAGA
* * * * * * *
21217710 CATGGTGTTATATGGGACCTCATATCGATGCCAATGACATATCCCAGA
1 TATGGTCTTACATGAGATCTCATATCGATGCCGATGCCATATCCCAGA
* * * *
21217758 TATGGTCTTACATGAGATCACATA-CTGATGCCGATGTCATGTCCCAAA
1 TATGGTCTTACATGAGATCTCATATC-GATGCCGATGCCATATCCCAGA
** * * * * * *
21217806 CGTGGTCTTATACGGGATCTCTTATCAATGCCAATGCCATATCCCAGA
1 TATGGTCTTACATGAGATCTCATATCGATGCCGATGCCATATCCCAGA
* * *
21217854 TATGGTCTTACA-CAGGATCTCATCTCGATGCTGATGCCATATCCCAGA
1 TATGGTCTTACATGA-GATCTCATATCGATGCCGATGCCATATCCCAGA
* * * * *
21217902 TATGGTCTTATACG-GAATCTCTTATAGATGCTGATGCCATATCC
1 TATGGTCTTACATGAG-ATCTCATATCGATGCCGATGCCATATCC
21217946 TATATGTAAC
Statistics
Matches: 180, Mismatches: 49, Indels: 14
0.74 0.20 0.06
Matches are distributed among these distances:
47 4 0.02
48 174 0.97
49 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (48 bp):
TATGGTCTTACATGAGATCTCATATCGATGCCGATGCCATATCCCAGA
Found at i:21217922 original size:96 final size:96
Alignment explanation
Indices: 21217692--21217945 Score: 298
Period size: 96 Copynumber: 2.6 Consensus size: 96
21217682 CATAATGGTA
* * * * * * *
21217692 CCGATGCCATGTCCTAGACATGGTGTTATATGGGACCTCATATCGATGCCAATGACATATCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTATACGGGATCTCTTATCAATGCCAATGCCATATCCCAG
*
21217757 ATATGGTCTTACATGAGATCACATACTGATG
66 ATATGGTCTTACAAGAGATCACATACTGATG
* * *
21217788 CCGATGTCATGTCCCAAACGTGGTCTTATACGGGATCTCTTATCAATGCCAATGCCATATCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTATACGGGATCTCTTATCAATGCCAATGCCATATCCCAG
*
21217853 ATATGGTCTTACACAG-GATCTCAT-CTCGATG
66 ATATGGTCTTACA-AGAGATCACATACT-GATG
* * * * **
21217884 CTGATGCCATATCCCAGATATGGTCTTATACGGAATCTCTTAT-AGATGCTGATGCCATATCC
1 CCGATGCCATGTCCCAGACATGGTCTTATACGGGATCTCTTATCA-ATGCCAATGCCATATCC
21217946 TATATGTAAC
Statistics
Matches: 134, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
95 3 0.02
96 130 0.97
97 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (96 bp):
CCGATGCCATGTCCCAGACATGGTCTTATACGGGATCTCTTATCAATGCCAATGCCATATCCCAG
ATATGGTCTTACAAGAGATCACATACTGATG
Found at i:21219158 original size:40 final size:42
Alignment explanation
Indices: 21219087--21219184 Score: 114
Period size: 40 Copynumber: 2.4 Consensus size: 42
21219077 TGAAAGCATT
21219087 GGCACTAAGTGTGCGATTTAAACTAGCTTCGGCTA-TT-A-AA
1 GGCACTAAGTGTGCGA-TTAAACTAGCTTCGGCTAGTTGAGAA
* * *
21219127 GGCACTAAGTGTGCGA-TACGACTTAGTTTCGGCTAGTTGAGAT
1 GGCACTAAGTGTGCGATTA-AAC-TAGCTTCGGCTAGTTGAGAA
21219170 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
21219185 GAATCATTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
38 2 0.04
39 2 0.04
40 27 0.54
41 2 0.04
42 1 0.02
43 16 0.32
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (42 bp):
GGCACTAAGTGTGCGATTAAACTAGCTTCGGCTAGTTGAGAA
Found at i:21225072 original size:28 final size:28
Alignment explanation
Indices: 21225040--21225110 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
21225030 TTGGCAGTAG
21225040 CTAAGACACATTAAAAACATGTACTAAA
1 CTAAGACACATTAAAAACATGTACTAAA
* * *
21225068 CTAAGACACATTAATAACATGTATTAGA
1 CTAAGACACATTAAAAACATGTACTAAA
*
21225096 TTAAGACACATTAAA
1 CTAAGACACATTAAA
21225111 CATTTTAATT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.51, C:0.15, G:0.08, T:0.25
Consensus pattern (28 bp):
CTAAGACACATTAAAAACATGTACTAAA
Found at i:21232495 original size:38 final size:38
Alignment explanation
Indices: 21232449--21232547 Score: 114
Period size: 38 Copynumber: 2.6 Consensus size: 38
21232439 GAAATCCTTG
*
21232449 TTATAATTATTGTAATTATAATTTACGAT-AGAATATTA
1 TTATAATTATTGTAATTATAATTTACGATCA-AACATTA
* *
21232487 TTATAATTATTGTAATTGA-AATTTTCGGTCAAACATTA
1 TTATAATTATTGTAATT-ATAATTTACGATCAAACATTA
*
21232525 CTATAATTA-TGATAATTATAATT
1 TTATAATTATTG-TAATTATAATT
21232548 ATTATATTTG
Statistics
Matches: 53, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
37 3 0.06
38 48 0.91
39 2 0.04
ACGTcount: A:0.40, C:0.05, G:0.08, T:0.46
Consensus pattern (38 bp):
TTATAATTATTGTAATTATAATTTACGATCAAACATTA
Found at i:21238971 original size:32 final size:32
Alignment explanation
Indices: 21238935--21238995 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
21238925 AATAAAATAA
21238935 TAAATTTACTTTTTAATTTAATATAAATCAAC
1 TAAATTTACTTTTTAATTTAATATAAATCAAC
21238967 TAAATTTACTTTTTAATTTAATATAAATC
1 TAAATTTACTTTTTAATTTAATATAAATC
21238996 TATTACCTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.43, C:0.08, G:0.00, T:0.49
Consensus pattern (32 bp):
TAAATTTACTTTTTAATTTAATATAAATCAAC
Found at i:21240598 original size:20 final size:20
Alignment explanation
Indices: 21240563--21240615 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
21240553 TTATGTTGCT
* *
21240563 TAAAATTTT-ATTTGTTTTA
1 TAAAATTTTCTTTTGTTTAA
**
21240582 TATTATTTTCTTTTGTTTAA
1 TAAAATTTTCTTTTGTTTAA
21240602 TAAAATTTTCTTTT
1 TAAAATTTTCTTTT
21240616 CTTTCGTGTT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 7 0.26
20 20 0.74
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.66
Consensus pattern (20 bp):
TAAAATTTTCTTTTGTTTAA
Found at i:21252530 original size:13 final size:13
Alignment explanation
Indices: 21252512--21252568 Score: 75
Period size: 13 Copynumber: 4.6 Consensus size: 13
21252502 AATTTTAAAT
21252512 TATTTAGAGATAA
1 TATTTAGAGATAA
21252525 TATTTAGA-AT--
1 TATTTAGAGATAA
*
21252535 TATTTAGTGATAA
1 TATTTAGAGATAA
*
21252548 TATTTAGTGATAA
1 TATTTAGAGATAA
21252561 TATTTAGA
1 TATTTAGA
21252569 AAAAATCTAG
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
10 7 0.18
11 2 0.05
12 2 0.05
13 28 0.72
ACGTcount: A:0.40, C:0.00, G:0.14, T:0.46
Consensus pattern (13 bp):
TATTTAGAGATAA
Found at i:21252535 original size:23 final size:23
Alignment explanation
Indices: 21252505--21252554 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
21252495 ATTTTTAAAT
21252505 TTTA-AATTATTTAGAGATAATA
1 TTTAGAATTATTTAGAGATAATA
*
21252527 TTTAGAATTATTTAGTGATAATA
1 TTTAGAATTATTTAGAGATAATA
21252550 TTTAG
1 TTTAG
21252555 TGATAATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 4 0.15
23 22 0.85
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (23 bp):
TTTAGAATTATTTAGAGATAATA
Found at i:21259890 original size:18 final size:19
Alignment explanation
Indices: 21259857--21259892 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
21259847 TCTTAGAGTA
*
21259857 AAATAATGTGTATTAAATC
1 AAATAAAGTGTATTAAATC
21259876 AAATAAAGT-TATTAAAT
1 AAATAAAGTGTATTAAAT
21259893 TTTTGAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.53, C:0.03, G:0.08, T:0.36
Consensus pattern (19 bp):
AAATAAAGTGTATTAAATC
Found at i:21265206 original size:28 final size:28
Alignment explanation
Indices: 21265131--21265226 Score: 110
Period size: 28 Copynumber: 3.6 Consensus size: 28
21265121 TATCTAGGAT
* *
21265131 ATGACATTGTGCTAAGTGAAATAAGACC
1 ATGACAATGTGCTAAGTGAAATAAGTCC
* *
21265159 ATGGC-A--T-CTAAATGAAATAAGTCC
1 ATGACAATGTGCTAAGTGAAATAAGTCC
21265183 ATGACAATGTGCTAAGTGAAATAAGTCC
1 ATGACAATGTGCTAAGTGAAATAAGTCC
* *
21265211 ATGGCATTGTGCTAAG
1 ATGACAATGTGCTAAG
21265227 CGAGAAATTT
Statistics
Matches: 56, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
24 19 0.34
25 2 0.04
27 1 0.02
28 34 0.61
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.26
Consensus pattern (28 bp):
ATGACAATGTGCTAAGTGAAATAAGTCC
Found at i:21265329 original size:51 final size:51
Alignment explanation
Indices: 21265253--21265401 Score: 237
Period size: 51 Copynumber: 2.9 Consensus size: 51
21265243 TGAACCTTAA
* *
21265253 GAATAAAATAGCTTTGGACACAAGTGTGTTACTATATGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
21265304 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
21265355 GAATAAAAGAGCTTTGG-CTACAAGGGTGGTACTATGTGAAGGCCACT
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCACT
21265402 GTGAAACCGT
Statistics
Matches: 91, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
50 1 0.01
51 90 0.99
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.29
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:21266381 original size:25 final size:25
Alignment explanation
Indices: 21266347--21266399 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
21266337 ATTATTTACA
21266347 TACCAACTTACTAAGCTATATATCT
1 TACCAACTTACTAAGCTATATATCT
21266372 TACCAACTTACTAAGCTATATATCT
1 TACCAACTTACTAAGCTATATATCT
21266397 TAC
1 TAC
21266400 TCCTTTATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.36, C:0.25, G:0.04, T:0.36
Consensus pattern (25 bp):
TACCAACTTACTAAGCTATATATCT
Found at i:21270927 original size:40 final size:40
Alignment explanation
Indices: 21270833--21271057 Score: 258
Period size: 40 Copynumber: 5.6 Consensus size: 40
21270823 TATTCGAATG
*
21270833 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
21270874 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
21270914 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
21270954 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
21270994 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
21271034 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
21271058 CTTGTGCAAG
Statistics
Matches: 158, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 1 0.01
40 127 0.80
41 29 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:21271013 original size:80 final size:80
Alignment explanation
Indices: 21270833--21271093 Score: 312
Period size: 80 Copynumber: 3.3 Consensus size: 80
21270823 TATTCGAATG
* * * *
21270833 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
21270898 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * *
21270914 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
21270979 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * *
21270994 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
21271059 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
21271073 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
21271094 ATTACTTGAG
Statistics
Matches: 155, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 95 0.61
81 32 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:21271047 original size:120 final size:120
Alignment explanation
Indices: 21270833--21271093 Score: 325
Period size: 120 Copynumber: 2.2 Consensus size: 120
21270823 TATTCGAATG
* * *
21270833 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * * *
21270898 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * *
21270954 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * *
21271017 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
21271073 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
21271094 ATTACTTGAG
Statistics
Matches: 122, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
118 15 0.12
119 19 0.16
120 57 0.47
121 31 0.25
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:21272221 original size:155 final size:155
Alignment explanation
Indices: 21271939--21272249 Score: 622
Period size: 155 Copynumber: 2.0 Consensus size: 155
21271929 GATCATATGA
21271939 ATAGTATGTTAAGAGATATTTAAGATTTCGTGAGACAGGGCCAGAACAGTTTCTGGATTCCCTGT
1 ATAGTATGTTAAGAGATATTTAAGATTTCGTGAGACAGGGCCAGAACAGTTTCTGGATTCCCTGT
21272004 TCCAACTTTGGAAATTCATTGTAAATTAACCAGATATAATTATAAGTCATTCCATATATGTATAG
66 TCCAACTTTGGAAATTCATTGTAAATTAACCAGATATAATTATAAGTCATTCCATATATGTATAG
21272069 ATTCCTTTTCGAGTCTAGTTTCTAT
131 ATTCCTTTTCGAGTCTAGTTTCTAT
21272094 ATAGTATGTTAAGAGATATTTAAGATTTCGTGAGACAGGGCCAGAACAGTTTCTGGATTCCCTGT
1 ATAGTATGTTAAGAGATATTTAAGATTTCGTGAGACAGGGCCAGAACAGTTTCTGGATTCCCTGT
21272159 TCCAACTTTGGAAATTCATTGTAAATTAACCAGATATAATTATAAGTCATTCCATATATGTATAG
66 TCCAACTTTGGAAATTCATTGTAAATTAACCAGATATAATTATAAGTCATTCCATATATGTATAG
21272224 ATTCCTTTTCGAGTCTAGTTTCTAT
131 ATTCCTTTTCGAGTCTAGTTTCTAT
21272249 A
1 A
21272250 AAAACAAACG
Statistics
Matches: 156, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
155 156 1.00
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (155 bp):
ATAGTATGTTAAGAGATATTTAAGATTTCGTGAGACAGGGCCAGAACAGTTTCTGGATTCCCTGT
TCCAACTTTGGAAATTCATTGTAAATTAACCAGATATAATTATAAGTCATTCCATATATGTATAG
ATTCCTTTTCGAGTCTAGTTTCTAT
Done.