Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56482370
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1659275 characters in sequence are not A, C, G, or T
File 69 of 172
Found at i:22694396 original size:52 final size:51
Alignment explanation
Indices: 22694285--22694407 Score: 230
Period size: 52 Copynumber: 2.4 Consensus size: 51
22694275 CCTCTTTAAT
22694285 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATA
22694335 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAATA
22694387 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
22694408 GCACTTCCTC
Statistics
Matches: 71, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
50 10 0.14
51 25 0.35
52 36 0.51
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (51 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATA
Found at i:22694482 original size:20 final size:20
Alignment explanation
Indices: 22694457--22694523 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
22694447 TTATGAATTC
*
22694457 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
*
22694477 ATCATGTGCATATCATGCAT
1 ATCATGTGCATATCATACAT
22694497 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
22694517 ATCATGT
1 ATCATGT
22694524 TTATCATACC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:22694488 original size:11 final size:11
Alignment explanation
Indices: 22694457--22694512 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
22694447 TTATGAATTC
22694457 ATCATGTGCAT
1 ATCATGTGCAT
* *
22694468 TTCA--TACAT
1 ATCATGTGCAT
22694477 ATCATGTGCAT
1 ATCATGTGCAT
22694488 ATCA--TGCAT
1 ATCATGTGCAT
22694497 ATCATGTGCAT
1 ATCATGTGCAT
22694508 ATCAT
1 ATCAT
22694513 ATCAATCATG
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:22694606 original size:24 final size:25
Alignment explanation
Indices: 22694559--22694606 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
22694549 ATAATTAAAC
22694559 CCTAAGGGCAAAACAGTCATTTTTA
1 CCTAAGGGCAAAACAGTCATTTTTA
*
22694584 CCTAGGGGCAAAACAGTCATTTT
1 CCTAAGGGCAAAACAGTCATTTT
22694607 CACATTATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (25 bp):
CCTAAGGGCAAAACAGTCATTTTTA
Found at i:22695537 original size:28 final size:28
Alignment explanation
Indices: 22695463--22695597 Score: 188
Period size: 27 Copynumber: 4.9 Consensus size: 28
22695453 NNNNNNNTGT
* *
22695463 AAATCG-GGGGTACTTTGGTAATTTTAC
1 AAATCGAGGGGTATTTTAGTAATTTTAC
*
22695490 AAGTCGA-GGGTATTTTAGTAATTTTAC
1 AAATCGAGGGGTATTTTAGTAATTTTAC
*
22695517 AAATCAAGGGGTATTTTAGTAATTTTAC
1 AAATCGAGGGGTATTTTAGTAATTTTAC
*
22695545 AAA-CCAGGGGTATTTTAGTAATTTTAC
1 AAATCGAGGGGTATTTTAGTAATTTTAC
22695572 AAAATCGA-GGGTATTTTAGTAATTTT
1 -AAATCGAGGGGTATTTTAGTAATTTT
22695598 GTAAACTAAA
Statistics
Matches: 97, Mismatches: 7, Indels: 7
0.87 0.06 0.06
Matches are distributed among these distances:
27 51 0.53
28 44 0.45
29 2 0.02
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (28 bp):
AAATCGAGGGGTATTTTAGTAATTTTAC
Found at i:22695546 original size:55 final size:56
Alignment explanation
Indices: 22695469--22695597 Score: 183
Period size: 55 Copynumber: 2.3 Consensus size: 56
22695459 NTGTAAATCG
* * **
22695469 GGGGTACTTTGGTAATTTTACAAGTC-GAGGGTATTTTAGTAATTTTAC-AAATCAA
1 GGGGTATTTTAGTAATTTTACAAACCAG-GGGTATTTTAGTAATTTTACAAAATCAA
*
22695524 GGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAAATCGA
1 GGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAAATCAA
22695580 -GGGTATTTTAGTAATTTT
1 GGGGTATTTTAGTAATTTT
22695598 GTAAACTAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
55 60 0.90
56 7 0.10
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (56 bp):
GGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAAATCAA
Found at i:22698420 original size:40 final size:40
Alignment explanation
Indices: 22698365--22698461 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 40
22698355 ACTCGATATC
* *
22698365 TCGCACACTAAGTGCCATACATAGTCGAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATACATAGCCAAAGCTATCTCAAA
* * *
22698405 TCGCACACTAAGTGCCATATATAGCCAAAGCTATGTCGAA
1 TCGCACACTAAGTGCCATACATAGCCAAAGCTATCTCAAA
* *
22698445 TCACACACTACGTGCCA
1 TCGCACACTAAGTGCCA
22698462 CAAATAGTTG
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.22
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATACATAGCCAAAGCTATCTCAAA
Found at i:22714927 original size:26 final size:26
Alignment explanation
Indices: 22714898--22714957 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
22714888 TCCCTTTGAA
* * *
22714898 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
22714924 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
22714952 CCATTC
1 TCATTC
22714958 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:22714943 original size:28 final size:28
Alignment explanation
Indices: 22714912--22714983 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
22714902 TCGATATTTT
*
22714912 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
22714940 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
22714968 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
22714984 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:22722274 original size:21 final size:21
Alignment explanation
Indices: 22722233--22722274 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
22722223 TACTTAACTG
*
22722233 AACTTCAATAAATTTTATATT
1 AACTTCAATAAATTTCATATT
*
22722254 AACTTC-ATAAATATTCCTATT
1 AACTTCAATAAAT-TTCATATT
22722275 TTATATTTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.40, C:0.14, G:0.00, T:0.45
Consensus pattern (21 bp):
AACTTCAATAAATTTCATATT
Found at i:22751331 original size:37 final size:37
Alignment explanation
Indices: 22751275--22751353 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
22751265 CCGAGCTCTA
* * *
22751275 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
22751312 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
22751349 AAGAC
1 AAGAC
22751354 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:22757338 original size:37 final size:37
Alignment explanation
Indices: 22757288--22757366 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
22757278 TTATTACGAA
* * *
22757288 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
22757325 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
22757362 GTCTT
1 GTCTT
22757367 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:22757561 original size:49 final size:49
Alignment explanation
Indices: 22757484--22757775 Score: 498
Period size: 49 Copynumber: 6.0 Consensus size: 49
22757474 GCCCTTCGGG
*
22757484 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
22757534 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
22757581 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATACATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
22757630 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATACATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
22757679 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
22757728 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
22757776 TTCACANGTA
Statistics
Matches: 234, Mismatches: 6, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
47 46 0.20
49 184 0.79
50 4 0.02
ACGTcount: A:0.32, C:0.29, G:0.08, T:0.32
Consensus pattern (49 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
Found at i:22775099 original size:11 final size:10
Alignment explanation
Indices: 22775067--22775103 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
22775057 CATGAGATTT
22775067 TGATAT-ACA
1 TGATATGACA
22775076 TGATATGACA
1 TGATATGACA
22775086 TGATATGCACA
1 TGATATG-ACA
22775097 TGATATG
1 TGATATG
22775104 TTACGAGATG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 6 0.23
10 10 0.38
11 10 0.38
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (10 bp):
TGATATGACA
Found at i:22775099 original size:21 final size:21
Alignment explanation
Indices: 22775073--22775123 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
22775063 ATTTTGATAT
* *
22775073 ACATGATATGACATGATATGC
1 ACATGATATGACACGAGATGC
**
22775094 ACATGATATGTTACGAGATGC
1 ACATGATATGACACGAGATGC
22775115 ACATGATAT
1 ACATGATAT
22775124 ACTCATTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (21 bp):
ACATGATATGACACGAGATGC
Found at i:22775476 original size:30 final size:31
Alignment explanation
Indices: 22775409--22775491 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 31
22775399 CGCTTACAGT
*
22775409 AAAGGCTTCAGCCCAGTAATATGAATTTTGA
1 AAAGGCTTCAGCCCAGTAATATGAATTATGA
** **
22775440 AAAGGCTTTGGCCCAGTGTTATGAATTATG-
1 AAAGGCTTCAGCCCAGTAATATGAATTATGA
*
22775470 AAAGGCTTCAGCCTAGT-ATATG
1 AAAGGCTTCAGCCCAGTAATATG
22775492 TTGAGACTAA
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
29 4 0.09
30 14 0.33
31 25 0.58
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAATTATGA
Found at i:22779764 original size:13 final size:13
Alignment explanation
Indices: 22779746--22779771 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22779736 TTAAATCTTC
22779746 TAAAAAATAAAAA
1 TAAAAAATAAAAA
22779759 TAAAAAATAAAAA
1 TAAAAAATAAAAA
22779772 GTAGTTTGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
TAAAAAATAAAAA
Found at i:22785969 original size:55 final size:55
Alignment explanation
Indices: 22785876--22785983 Score: 139
Period size: 55 Copynumber: 2.0 Consensus size: 55
22785866 CCCACACCCG
*
22785876 TGTTAATTTCACAGGTTCGACCACGGGTGCTAGACACGGGCGTGTCTCACGCCCA
1 TGTTAATTTCACAGGTTCGACCACGGGTGCTAGACACGGGCGTGTCGCACGCCCA
* ** *
22785931 TGTTAATTTGACAGGTTC-AGCCAC-GGTTTTAAGGCACGGGCGTGTCGCACGCC
1 TGTTAATTTCACAGGTTCGA-CCACGGGTGCT-AGACACGGGCGTGTCGCACGCC
22785984 TGTGTTGTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
54 5 0.11
55 41 0.89
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (55 bp):
TGTTAATTTCACAGGTTCGACCACGGGTGCTAGACACGGGCGTGTCGCACGCCCA
Found at i:22796860 original size:19 final size:19
Alignment explanation
Indices: 22796831--22796900 Score: 81
Period size: 19 Copynumber: 3.6 Consensus size: 19
22796821 AAAATATAAT
22796831 TTTTAGAATTTTTATAAA-TA
1 TTTT-GAATTTTTA-AAATTA
*
22796851 TTTTGAATTTTAAAAATTA
1 TTTTGAATTTTTAAAATTA
*
22796870 TTTTGAATATTTGAAAATTA
1 TTTTGAAT-TTTTAAAATTA
22796890 TTTTG-ATTTTT
1 TTTTGAATTTTT
22796901 TTTAACTTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
18 6 0.13
19 20 0.44
20 19 0.42
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (19 bp):
TTTTGAATTTTTAAAATTA
Found at i:22796888 original size:20 final size:19
Alignment explanation
Indices: 22796816--22796899 Score: 82
Period size: 20 Copynumber: 4.2 Consensus size: 19
22796806 TTTTATAATT
22796816 TTTTAAAAATATAATTTTTAGAA
1 TTTTAAAAAT-T-A-TTTT-GAA
*
22796839 TTTTTATAAA-TATTTTGAA
1 -TTTTAAAAATTATTTTGAA
22796858 TTTTAAAAATTATTTTGAA
1 TTTTAAAAATTATTTTGAA
*
22796877 TATTTGAAAATTATTTTG-A
1 T-TTTAAAAATTATTTTGAA
22796896 TTTT
1 TTTT
22796900 TTTTAACTTT
Statistics
Matches: 55, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
18 11 0.20
19 15 0.27
20 19 0.35
21 1 0.02
22 1 0.02
24 8 0.15
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (19 bp):
TTTTAAAAATTATTTTGAA
Found at i:22799804 original size:36 final size:36
Alignment explanation
Indices: 22799763--22799842 Score: 94
Period size: 36 Copynumber: 2.2 Consensus size: 36
22799753 TGTCATTCGT
22799763 TTTCAAAATGTAATTCA-TTATCACAAA-GTTATTCT-C
1 TTTCAAAATGTAATTCACTT-TCA-AAACGTTATT-TAC
* *
22799799 TTTCAAAATGTTATTTACTTTCAAAACGTTATTTAC
1 TTTCAAAATGTAATTCACTTTCAAAACGTTATTTAC
22799835 TTTCAAAA
1 TTTCAAAA
22799843 CGTCACTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
35 4 0.10
36 33 0.85
37 2 0.05
ACGTcount: A:0.36, C:0.15, G:0.05, T:0.44
Consensus pattern (36 bp):
TTTCAAAATGTAATTCACTTTCAAAACGTTATTTAC
Found at i:22799811 original size:18 final size:18
Alignment explanation
Indices: 22799763--22799842 Score: 85
Period size: 18 Copynumber: 4.4 Consensus size: 18
22799753 TGTCATTCGT
* *
22799763 TTTCAAAATGTAATTCA-
1 TTTCAAAATGTTATTTAC
22799780 TTATCACAAA-GTTATTCT-C
1 TT-TCA-AAATGTTATT-TAC
22799799 TTTCAAAATGTTATTTAC
1 TTTCAAAATGTTATTTAC
*
22799817 TTTCAAAACGTTATTTAC
1 TTTCAAAATGTTATTTAC
22799835 TTTCAAAA
1 TTTCAAAA
22799843 CGTCACTTAT
Statistics
Matches: 54, Mismatches: 3, Indels: 11
0.79 0.04 0.16
Matches are distributed among these distances:
17 6 0.11
18 43 0.80
19 5 0.09
ACGTcount: A:0.36, C:0.15, G:0.05, T:0.44
Consensus pattern (18 bp):
TTTCAAAATGTTATTTAC
Found at i:22799843 original size:18 final size:18
Alignment explanation
Indices: 22799798--22799845 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
22799788 AAGTTATTCT
*
22799798 CTTTCAAAATGTTATTTA
1 CTTTCAAAACGTTATTTA
22799816 CTTTCAAAACGTTATTTA
1 CTTTCAAAACGTTATTTA
22799834 CTTTCAAAACGT
1 CTTTCAAAACGT
22799846 CACTTATTAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.33, C:0.17, G:0.06, T:0.44
Consensus pattern (18 bp):
CTTTCAAAACGTTATTTA
Found at i:22802167 original size:18 final size:17
Alignment explanation
Indices: 22802144--22802177 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
22802134 ATATTGTTGG
22802144 CTCGTGCAGGCCCACACC
1 CTCGTG-AGGCCCACACC
*
22802162 CTCGTGTGGCCCACAC
1 CTCGTGAGGCCCACAC
22802178 GGCCCAATTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.15, C:0.47, G:0.24, T:0.15
Consensus pattern (17 bp):
CTCGTGAGGCCCACACC
Found at i:22804998 original size:21 final size:21
Alignment explanation
Indices: 22804973--22805013 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
22804963 TCTACGGCTA
*
22804973 AGTGCGTTAGCCACTACATTC
1 AGTGCGTCAGCCACTACATTC
22804994 AGTGCGTCAGCCACTACATT
1 AGTGCGTCAGCCACTACATT
22805014 ATCCTTACCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (21 bp):
AGTGCGTCAGCCACTACATTC
Found at i:22816364 original size:90 final size:90
Alignment explanation
Indices: 22816261--22816488 Score: 307
Period size: 90 Copynumber: 2.5 Consensus size: 90
22816251 GCGAAAAATT
* * * ** * *
22816261 TTTTATTCAAATTTAAAAACTTATTTTTGGAAATAAAAATAAAAATTGGAAAAAAATCCATTGAG
1 TTTTATTCTAATTTAAAAACTCATTTTTGGAAATAAAAATCAAAACCGGAAAAAAATCCATTAAA
*
22816326 C-GATGGGAATAAAT-TCTGAAACAGA
66 CAG-CGGGAATAAATATC-GAAACAGA
*
22816351 TTTTATTCTAATTTAAAAACTCATTTTTGGAAATAAAAATCAAAACCGGAATAAAATCCATTAAA
1 TTTTATTCTAATTTAAAAACTCATTTTTGGAAATAAAAATCAAAACCGGAAAAAAATCCATTAAA
22816416 CAGCGGGAATAAATATCGAAACAGA
66 CAGCGGGAATAAATATCGAAACAGA
** *
22816441 TTTTATTCTAATTTAAAAAACTCGCTTCTGGAAATAAAAATCAAAACC
1 TTTTATTCTAATTT-AAAAACTCATTTTTGGAAATAAAAATCAAAACC
22816489 AAAAATAAAA
Statistics
Matches: 123, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
90 90 0.73
91 33 0.27
ACGTcount: A:0.47, C:0.12, G:0.11, T:0.30
Consensus pattern (90 bp):
TTTTATTCTAATTTAAAAACTCATTTTTGGAAATAAAAATCAAAACCGGAAAAAAATCCATTAAA
CAGCGGGAATAAATATCGAAACAGA
Found at i:22816529 original size:91 final size:90
Alignment explanation
Indices: 22816261--22816539 Score: 244
Period size: 90 Copynumber: 3.1 Consensus size: 90
22816251 GCGAAAAATT
* * * * * *** *
22816261 TTTTATTCAAATTTAAAAACTTATTTTTGGAAATAAAAATAAAAATTGGAAA-AAAATCCATTGA
1 TTTTATTCTAATTTAAAAACTCACTTCTGGAAATAAAAATCAAAA-CCAAAATAAAATCCATTAA
* * **
22816325 GC-G-ATGGGAATAAATTCTGAAACAGA
65 ACAGCA--GGAATAAATACCAAAACAGA
* * **
22816351 TTTTATTCTAATTTAAAAACTCATTTTTGGAAATAAAAATCAAAACCGGAATAAAATCCATTAAA
1 TTTTATTCTAATTTAAAAACTCACTTCTGGAAATAAAAATCAAAACCAAAATAAAATCCATTAAA
* * *
22816416 CAGCGGGAATAAATATCGAAACAGA
66 CAGCAGGAATAAATACCAAAACAGA
*
22816441 TTTTATTCTAATTTAAAAAACTCGCTTCTGGAAATAAAAATCAAAACCAAAAATAAAAT-CAGTT
1 TTTTATTCTAATTT-AAAAACTCACTTCTGGAAATAAAAATCAAAACC-AAAATAAAATCCA-TT
* * *
22816505 GAACGGCAGGAATAAA-CCCAAAACAGA
63 AAACAGCAGGAATAAATACCAAAACAGA
*
22816532 ATTTATTC
1 TTTTATTC
22816540 ACTATAACAG
Statistics
Matches: 159, Mismatches: 24, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
89 3 0.02
90 85 0.53
91 48 0.30
92 23 0.14
ACGTcount: A:0.48, C:0.13, G:0.11, T:0.28
Consensus pattern (90 bp):
TTTTATTCTAATTTAAAAACTCACTTCTGGAAATAAAAATCAAAACCAAAATAAAATCCATTAAA
CAGCAGGAATAAATACCAAAACAGA
Found at i:22817814 original size:41 final size:40
Alignment explanation
Indices: 22817682--22817825 Score: 182
Period size: 40 Copynumber: 3.6 Consensus size: 40
22817672 TTTGGATATA
*
22817682 TATATATGGCACTTAGTGTGCGATCCGAGATAGCTTCGGC
1 TATATATGGCACTTAGTGTGCGATCTGAGATAGCTTCGGC
* * * *
22817722 TATATATGGCACTTAGTGTGCAATTTGAAATAGCTACGGC
1 TATATATGGCACTTAGTGTGCGATCTGAGATAGCTTCGGC
* * *
22817762 TATATGTGGCACTTATTGTACGATACTGAGATAGCTTCGGC
1 TATATATGGCACTTAGTGTGCGAT-CTGAGATAGCTTCGGC
*
22817803 TATGA-AAGGCACTTAGTGTGCGA
1 TAT-ATATGGCACTTAGTGTGCGA
22817826 GAATTCGAGT
Statistics
Matches: 86, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
40 55 0.64
41 30 0.35
42 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (40 bp):
TATATATGGCACTTAGTGTGCGATCTGAGATAGCTTCGGC
Found at i:22818753 original size:19 final size:19
Alignment explanation
Indices: 22818701--22818754 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 19
22818691 GTCTCAGCCG
22818701 TGTGTGTGACACACGGTCA
1 TGTGTGTGACACACGGTCA
*
22818720 --TGT-TG---CACGGCCA
1 TGTGTGTGACACACGGTCA
22818733 TGTGTGTGACACACGGTCA
1 TGTGTGTGACACACGGTCA
22818752 TGT
1 TGT
22818755 TGCATGGCCG
Statistics
Matches: 27, Mismatches: 2, Indels: 12
0.66 0.05 0.29
Matches are distributed among these distances:
13 7 0.26
15 3 0.11
16 4 0.15
17 3 0.11
19 10 0.37
ACGTcount: A:0.19, C:0.22, G:0.31, T:0.28
Consensus pattern (19 bp):
TGTGTGTGACACACGGTCA
Found at i:22818769 original size:32 final size:32
Alignment explanation
Indices: 22818697--22818769 Score: 128
Period size: 32 Copynumber: 2.3 Consensus size: 32
22818687 GTGTGTCTCA
22818697 GCCGTGTGTGTGACACACGGTCATGTTGCACG
1 GCCGTGTGTGTGACACACGGTCATGTTGCACG
* *
22818729 GCCATGTGTGTGACACACGGTCATGTTGCATG
1 GCCGTGTGTGTGACACACGGTCATGTTGCACG
22818761 GCCGTGTGT
1 GCCGTGTGT
22818770 CCTCTGGTGT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.15, C:0.23, G:0.34, T:0.27
Consensus pattern (32 bp):
GCCGTGTGTGTGACACACGGTCATGTTGCACG
Found at i:22818890 original size:12 final size:12
Alignment explanation
Indices: 22818873--22818898 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
22818863 ACAGGTTTGG
22818873 CACGGCCTAGCA
1 CACGGCCTAGCA
22818885 CACGGCCTAGCA
1 CACGGCCTAGCA
22818897 CA
1 CA
22818899 TTGGCGTGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.42, G:0.23, T:0.08
Consensus pattern (12 bp):
CACGGCCTAGCA
Found at i:22824116 original size:35 final size:35
Alignment explanation
Indices: 22824064--22824130 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
22824054 CCGAGAATGC
* *
22824064 TATGAGAAAATAGTACCCTAACCTATTCACTAAGG
1 TATGAGAAAACAATACCCTAACCTATTCACTAAGG
22824099 TATGAGAAAACAATACCCTAACCTATTCACTA
1 TATGAGAAAACAATACCCTAACCTATTCACTA
22824131 GTAAGATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.42, C:0.22, G:0.10, T:0.25
Consensus pattern (35 bp):
TATGAGAAAACAATACCCTAACCTATTCACTAAGG
Found at i:22825362 original size:40 final size:41
Alignment explanation
Indices: 22825311--22825498 Score: 197
Period size: 40 Copynumber: 4.6 Consensus size: 41
22825301 GATTTGGATA
* *
22825311 TATATATGGCACTTAATGTGTGA-TTTGAAATAGCTTCAGC
1 TATATATGGCACTTAGTGTGTGAGATTGAAATAGCTTCAGC
*
22825351 TATATATGGCACTTA--GTGTGCGATTCGAAATAGCTTCAGC
1 TATATATGGCACTTAGTGTGTGAGATT-GAAATAGCTTCAGC
* * *
22825391 TATATGTGGCACTTAGTGTGTGAGACT-AAGATAGCTTCGGC
1 TATATATGGCACTTAGTGTGTGAGATTGAA-ATAGCTTCAGC
* * *
22825432 TATGA-AAGGCACTTAGTGTGCGAGATTAAAATAGCTTCAGC
1 TAT-ATATGGCACTTAGTGTGTGAGATTGAAATAGCTTCAGC
* * *
22825473 TATGTTTTGGCACTTAATGTGTGAGA
1 TAT-ATATGGCACTTAGTGTGTGAGA
22825499 ATTCCAGTAT
Statistics
Matches: 124, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
38 5 0.04
39 2 0.02
40 45 0.36
41 45 0.36
42 27 0.22
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (41 bp):
TATATATGGCACTTAGTGTGTGAGATTGAAATAGCTTCAGC
Found at i:22825443 original size:41 final size:41
Alignment explanation
Indices: 22825338--22825476 Score: 149
Period size: 41 Copynumber: 3.4 Consensus size: 41
22825328 GTGTGATTTG
* ** *
22825338 AAATAGCTTCAGCTAT-ATATGGCACTTAGTGTGCGATTC-G
1 AAATAGCTTCAGCTATGA-AAGGCACTTAGTGTGCGAGACTA
** *
22825378 AAATAGCTTCAGCTAT-ATGTGGCACTTAGTGTGTGAGACTA
1 AAATAGCTTCAGCTATGA-AAGGCACTTAGTGTGCGAGACTA
* * *
22825419 AGATAGCTTCGGCTATGAAAGGCACTTAGTGTGCGAGATTA
1 AAATAGCTTCAGCTATGAAAGGCACTTAGTGTGCGAGACTA
22825460 AAATAGCTTCAGCTATG
1 AAATAGCTTCAGCTATG
22825477 TTTTGGCACT
Statistics
Matches: 84, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
40 35 0.42
41 48 0.57
42 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (41 bp):
AAATAGCTTCAGCTATGAAAGGCACTTAGTGTGCGAGACTA
Found at i:22825446 original size:81 final size:82
Alignment explanation
Indices: 22825317--22825498 Score: 221
Period size: 81 Copynumber: 2.2 Consensus size: 82
22825307 GATATATATA
** * *
22825317 TGGCACTTAATGTGTGA-TTTGAA-ATAGCTTCAGCTATATATGGCACTTAGTGTGC-GATTCGA
1 TGGCACTTAATGTGTGAGACT-AAGATAGCTTCAGCTATATAAGGCACTTAGTGTGCAGATT-AA
22825379 AATAGCTTCAGCTAT-ATG
64 AATAGCTTCAGCTATGATG
* *
22825397 TGGCACTTAGTGTGTGAGACTAAGATAGCTTCGGCTATGA-AAGGCACTTAGTGTGCGAGATTAA
1 TGGCACTTAATGTGTGAGACTAAGATAGCTTCAGCTAT-ATAAGGCACTTAGTGTGC-AGATTAA
* *
22825461 AATAGCTTCAGCTATGTTT
64 AATAGCTTCAGCTATGATG
22825480 TGGCACTTAATGTGTGAGA
1 TGGCACTTAATGTGTGAGA
22825499 ATTCCAGTAT
Statistics
Matches: 87, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
80 18 0.21
81 29 0.33
82 17 0.20
83 23 0.26
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.33
Consensus pattern (82 bp):
TGGCACTTAATGTGTGAGACTAAGATAGCTTCAGCTATATAAGGCACTTAGTGTGCAGATTAAAA
TAGCTTCAGCTATGATG
Found at i:22828074 original size:48 final size:48
Alignment explanation
Indices: 22828020--22828117 Score: 196
Period size: 48 Copynumber: 2.0 Consensus size: 48
22828010 AAATGAATGA
22828020 AATGAATAGAAATAGAGAAAAAGAATTCATTAAAAATGATTTTCTCTT
1 AATGAATAGAAATAGAGAAAAAGAATTCATTAAAAATGATTTTCTCTT
22828068 AATGAATAGAAATAGAGAAAAAGAATTCATTAAAAATGATTTTCTCTT
1 AATGAATAGAAATAGAGAAAAAGAATTCATTAAAAATGATTTTCTCTT
22828116 AA
1 AA
22828118 ATGGAGAAAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.51, C:0.06, G:0.12, T:0.31
Consensus pattern (48 bp):
AATGAATAGAAATAGAGAAAAAGAATTCATTAAAAATGATTTTCTCTT
Found at i:22830389 original size:68 final size:68
Alignment explanation
Indices: 22830293--22830419 Score: 179
Period size: 68 Copynumber: 1.9 Consensus size: 68
22830283 TTTTAATAGT
*
22830293 TTAATATTAAATTTAATTTAATACTTATCTTA-ATAGTATTTTATTAA-A-TTAATATTAAAGTG
1 TTAATATTAAATTTAATTTAATACTTATC-TACAT--TATTTTAATAAGATTTAATATTAAAGTG
22830355 AATATC
63 AATATC
**
22830361 TTAATATTAAATTTAATTTAATGTTTATCTACATTATTTTAATAAGATTTAATATTAAA
1 TTAATATTAAATTTAATTTAATACTTATCTACATTATTTTAATAAGATTTAATATTAAA
22830420 TTTAATCTAA
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
66 10 0.19
67 3 0.06
68 40 0.75
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.50
Consensus pattern (68 bp):
TTAATATTAAATTTAATTTAATACTTATCTACATTATTTTAATAAGATTTAATATTAAAGTGAAT
ATC
Found at i:22830491 original size:12 final size:12
Alignment explanation
Indices: 22830474--22830499 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
22830464 TTAAAGTGAT
22830474 TAAGTTTAATCA
1 TAAGTTTAATCA
22830486 TAAGTTTAATCA
1 TAAGTTTAATCA
22830498 TA
1 TA
22830500 GTTAAACTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (12 bp):
TAAGTTTAATCA
Found at i:22831706 original size:33 final size:33
Alignment explanation
Indices: 22831659--22831721 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
22831649 ATAGTAACGT
* * * *
22831659 TCTGGGCTTGAGCCCTATTCATTAACAGTACAG
1 TCTGGGCCTAAGCCCTATGCAGTAACAGTACAG
22831692 TCTGGGCCTAAGCCCTATGCAGTAACAGTA
1 TCTGGGCCTAAGCCCTATGCAGTAACAGTA
22831722 TGGGCCTATG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (33 bp):
TCTGGGCCTAAGCCCTATGCAGTAACAGTACAG
Found at i:22831742 original size:28 final size:28
Alignment explanation
Indices: 22831682--22831743 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
22831672 CCTATTCATT
* *
22831682 AACAGT-ACAGTCTGGGCCTAAGCCCTA
1 AACAGTAACAGTATGGGCCTAAGCCCAA
** *
22831709 TGCAGTAACAGTATGGGCCTATGCCCAA
1 AACAGTAACAGTATGGGCCTAAGCCCAA
22831737 AACAGTA
1 AACAGTA
22831744 CAATCACAAT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
27 4 0.15
28 23 0.85
ACGTcount: A:0.32, C:0.26, G:0.23, T:0.19
Consensus pattern (28 bp):
AACAGTAACAGTATGGGCCTAAGCCCAA
Found at i:22831872 original size:20 final size:21
Alignment explanation
Indices: 22831849--22831893 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 21
22831839 CCAACTCACC
*
22831849 AATAACGCAGCAAAGCTATTA
1 AATAACGCAGCAAAGCTACTA
*
22831870 ATAGTAATGCAGCAAAGCTACTA
1 A-A-TAACGCAGCAAAGCTACTA
22831893 A
1 A
22831894 TAGCGGTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 1 0.05
22 1 0.05
23 18 0.90
ACGTcount: A:0.47, C:0.18, G:0.16, T:0.20
Consensus pattern (21 bp):
AATAACGCAGCAAAGCTACTA
Found at i:22834065 original size:74 final size:74
Alignment explanation
Indices: 22833975--22834122 Score: 287
Period size: 74 Copynumber: 2.0 Consensus size: 74
22833965 AATTAAAGTG
22833975 TACAAGTCACGCATACATAGTCCACCATCCACTCAAGATTATGGTATGCCACACTATGAATGTCA
1 TACAAGTCACGCATACATAGTCCACCATCCACTCAAGATTATGGTATGCCACACTATGAATGTCA
22834040 CAAGTGAAT
66 CAAGTGAAT
*
22834049 TACAAGTTACGCATACATAGTCCACCATCCACTCAAGATTATGGTATGCCACACTATGAATGTCA
1 TACAAGTCACGCATACATAGTCCACCATCCACTCAAGATTATGGTATGCCACACTATGAATGTCA
22834114 CAAGTGAAT
66 CAAGTGAAT
22834123 AGATTCATAA
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 73 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (74 bp):
TACAAGTCACGCATACATAGTCCACCATCCACTCAAGATTATGGTATGCCACACTATGAATGTCA
CAAGTGAAT
Found at i:22835529 original size:15 final size:15
Alignment explanation
Indices: 22835509--22835539 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
22835499 CTACACAGAA
22835509 GTTTTTATCCCAGTT
1 GTTTTTATCCCAGTT
*
22835524 GTTTTTATCCTAGTT
1 GTTTTTATCCCAGTT
22835539 G
1 G
22835540 CAAGACATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.16, G:0.16, T:0.55
Consensus pattern (15 bp):
GTTTTTATCCCAGTT
Found at i:22842039 original size:241 final size:241
Alignment explanation
Indices: 22841616--22842100 Score: 934
Period size: 241 Copynumber: 2.0 Consensus size: 241
22841606 GCAAACAAAG
*
22841616 ATTTTTGGCTCAGGGCATCAGCAACAACATTAGCTTTTCCTGAGTGATAATCAATCACAAATTCA
1 ATTTTTGGCTCAGGGCATCAGCAACAACATTAGCTTTTCCCGAGTGATAATCAATCACAAATTCA
22841681 TAATCTTTCAATAACTCAAGCAATCTTCGTTGTCGCAAATTCAAATCTTTTTGTGACATCAGATA
66 TAATCTTTCAATAACTCAAGCAATCTTCGTTGTCGCAAATTCAAATCTTTTTGTGACATCAGATA
*
22841746 TTTTAAGCTTTTTTTATCTGTATAAATGTGGCAATTCTCACCGTGTAAGTAATGTCGCCAAATTT
131 TTTTAAGCTTTTTTTATCTGTATAAATGTGGCAATTCTCACCGTATAAGTAATGTCGCCAAATTT
22841811 TCAATGCAAACACAATTGCAGCCAACTCTAAGTCATGCGTCGGATA
196 TCAATGCAAACACAATTGCAGCCAACTCTAAGTCATGCGTCGGATA
22841857 ATTTTTGGCTCAGGGCATCAGCAACAACATTAGCTTTTCCCGAGTGATAATCAATCACAAATTCA
1 ATTTTTGGCTCAGGGCATCAGCAACAACATTAGCTTTTCCCGAGTGATAATCAATCACAAATTCA
*
22841922 TAATCTTTCAATAACTCAAGCAATCTTCGTTGTCGCAGATTCAAATCTTTTTGTGACATCAGATA
66 TAATCTTTCAATAACTCAAGCAATCTTCGTTGTCGCAAATTCAAATCTTTTTGTGACATCAGATA
22841987 TTTTAAGCTTTTTTTATCTGTATAAATGTGGCAATTCTCACCGTATAAGTAATGTCGCCAAATTT
131 TTTTAAGCTTTTTTTATCTGTATAAATGTGGCAATTCTCACCGTATAAGTAATGTCGCCAAATTT
*
22842052 TCAATGCGAACACAATTGCAGCCAACTCTAAGTCATGCGTCGGATA
196 TCAATGCAAACACAATTGCAGCCAACTCTAAGTCATGCGTCGGATA
22842098 ATT
1 ATT
22842101 CTTTTCATGC
Statistics
Matches: 240, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
241 240 1.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (241 bp):
ATTTTTGGCTCAGGGCATCAGCAACAACATTAGCTTTTCCCGAGTGATAATCAATCACAAATTCA
TAATCTTTCAATAACTCAAGCAATCTTCGTTGTCGCAAATTCAAATCTTTTTGTGACATCAGATA
TTTTAAGCTTTTTTTATCTGTATAAATGTGGCAATTCTCACCGTATAAGTAATGTCGCCAAATTT
TCAATGCAAACACAATTGCAGCCAACTCTAAGTCATGCGTCGGATA
Found at i:22844388 original size:21 final size:21
Alignment explanation
Indices: 22844362--22844405 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
22844352 TGCTGAGTCA
22844362 TACAAATTCTCTTTCATATTC
1 TACAAATTCTCTTTCATATTC
*
22844383 TACAAATTCTCTTTGATATTC
1 TACAAATTCTCTTTCATATTC
22844404 TA
1 TA
22844406 TTACCGATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.20, G:0.02, T:0.48
Consensus pattern (21 bp):
TACAAATTCTCTTTCATATTC
Found at i:22845458 original size:15 final size:15
Alignment explanation
Indices: 22845413--22845466 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
22845403 ATTTTTTGTG
22845413 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
* **
22845428 TTTA-TATCT-T-TT
1 TTTATTATGTGTGAA
22845440 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
22845455 TTTATATATGTG
1 TTTAT-TATGTG
22845467 AAATTTTTGT
Statistics
Matches: 29, Mismatches: 6, Indels: 7
0.69 0.14 0.17
Matches are distributed among these distances:
12 4 0.14
13 5 0.17
14 5 0.17
15 9 0.31
16 6 0.21
ACGTcount: A:0.24, C:0.02, G:0.15, T:0.59
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:22846963 original size:56 final size:56
Alignment explanation
Indices: 22846786--22846921 Score: 254
Period size: 56 Copynumber: 2.4 Consensus size: 56
22846776 TTCGACTTGT
*
22846786 GATATGTGATTTCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATC
1 GATATGTGATTTCGATATATGTGTGCGAGTAAGACCACGTTTAATACGCTGGCATC
*
22846842 GATATGTGATTTCGATATATGTGTGCGAGTTAGACCACGTTTAATACGCTGGCATC
1 GATATGTGATTTCGATATATGTGTGCGAGTAAGACCACGTTTAATACGCTGGCATC
22846898 GATATGTGATTTCGATATATGTGT
1 GATATGTGATTTCGATATATGTGT
22846922 ATCAGTAAGA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
56 78 1.00
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.36
Consensus pattern (56 bp):
GATATGTGATTTCGATATATGTGTGCGAGTAAGACCACGTTTAATACGCTGGCATC
Found at i:22852631 original size:22 final size:22
Alignment explanation
Indices: 22852606--22852648 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
22852596 TGTTAAAAAA
* *
22852606 AATCTAATTAATTTTTTTAATG
1 AATCCAATTAATTTTTATAATG
*
22852628 AATCCATTTAATTTTTATAAT
1 AATCCAATTAATTTTTATAAT
22852649 ATTTCATTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.37, C:0.07, G:0.02, T:0.53
Consensus pattern (22 bp):
AATCCAATTAATTTTTATAATG
Found at i:22853351 original size:23 final size:23
Alignment explanation
Indices: 22853338--22853389 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
22853328 TGATTTTTAA
22853338 ATTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
*
22853361 ATTTAGAATTATTTAGTAATAAT
1 ATTTAGAATTATTTAGTGATAAT
22853384 ATTTAG
1 ATTTAG
22853390 GAAAAATCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTGATAAT
Found at i:22858803 original size:47 final size:47
Alignment explanation
Indices: 22858749--22859644 Score: 1594
Period size: 47 Copynumber: 19.1 Consensus size: 47
22858739 TTAGGATTTT
** * *
22858749 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
22858796 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
22858843 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
22858890 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
22858937 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
22858984 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
22859031 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
22859078 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
22859125 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
22859172 ATGTGATGAATGTGAACATGCATATATGTGGTAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
22859219 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
22859266 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
22859313 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
22859360 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
22859407 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
22859454 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
22859501 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
22859548 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
22859595 ATGTGATGAATGTGAACATGAATATGTGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
22859642 ATG
1 ATG
22859645 CGAAACGTGT
Statistics
Matches: 825, Mismatches: 24, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 825 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:22859293 original size:23 final size:23
Alignment explanation
Indices: 22859219--22859293 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
22859209 CGAATGGCCA
22859219 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
22859242 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
22859266 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
22859289 ATGTG
1 ATGTG
22859294 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:22859685 original size:46 final size:46
Alignment explanation
Indices: 22859621--22859708 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 46
22859611 CATGAATATG
* * *
22859621 TGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATA
1 TGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGGATA
* * *
22859667 TGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 TGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATG
22859709 TGTATATATA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 36 1.00
ACGTcount: A:0.32, C:0.09, G:0.33, T:0.26
Consensus pattern (46 bp):
TGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGGATA
Found at i:22865433 original size:40 final size:38
Alignment explanation
Indices: 22865341--22865437 Score: 106
Period size: 40 Copynumber: 2.5 Consensus size: 38
22865331 ACCATCTCTG
* *
22865341 TCCAACCCAACACACCATGTGGGGATAAAACCGACCCA
1 TCCAACCCTACACACCATATGGGGATAAAACCGACCCA
* * * *
22865379 -CCTATCCCTGCACACCGTATATGGGGATATAATCGACCCA
1 TCC-AACCCTACACACC--ATATGGGGATAAAACCGACCCA
22865419 TCCAACCCTACACACCATA
1 TCCAACCCTACACACCATA
22865438 AAGTACAGCA
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
37 2 0.04
38 13 0.28
40 30 0.64
41 2 0.04
ACGTcount: A:0.33, C:0.37, G:0.13, T:0.16
Consensus pattern (38 bp):
TCCAACCCTACACACCATATGGGGATAAAACCGACCCA
Found at i:22867286 original size:20 final size:19
Alignment explanation
Indices: 22867250--22867304 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
22867240 TTTATTTACC
* *
22867250 AATTGATTTTATTTTTTTA
1 AATTTATTTTTTTTTTTTA
*
22867269 AATTTATTTTTTTATTTTTG
1 AATTTATTTTTTT-TTTTTA
*
22867289 AATCTATTTTTATTTT
1 AATTTATTTTT-TTTT
22867305 ATTTTGTTAC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 11 0.37
20 17 0.57
21 2 0.07
ACGTcount: A:0.24, C:0.02, G:0.04, T:0.71
Consensus pattern (19 bp):
AATTTATTTTTTTTTTTTA
Found at i:22870526 original size:20 final size:20
Alignment explanation
Indices: 22870501--22870547 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
22870491 CATGGTGGTT
22870501 CCCGTGTGGTTTGGGACACG
1 CCCGTGTGGTTTGGGACACG
22870521 CCCGTGTGGTTTGGGACACG
1 CCCGTGTGGTTTGGGACACG
22870541 CCCGTGT
1 CCCGTGT
22870548 CCCTAACCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.09, C:0.28, G:0.38, T:0.26
Consensus pattern (20 bp):
CCCGTGTGGTTTGGGACACG
Found at i:22878675 original size:22 final size:22
Alignment explanation
Indices: 22878647--22878714 Score: 60
Period size: 22 Copynumber: 3.4 Consensus size: 22
22878637 GAGAGTTGTC
22878647 AAAAAGTGGGGAATTTAAGCCG
1 AAAAAGTGGGGAATTTAAGCCG
*
22878669 AAAAAGT---G-A--TATGTCC-
1 AAAAAGTGGGGAATTTAAG-CCG
22878685 AAAAAGTGGGGAATTTAAGCCG
1 AAAAAGTGGGGAATTTAAGCCG
*
22878707 AAAGAGTG
1 AAAAAGTG
22878715 AGATGTCCCT
Statistics
Matches: 35, Mismatches: 3, Indels: 16
0.65 0.06 0.30
Matches are distributed among these distances:
16 10 0.29
17 2 0.06
18 1 0.03
19 2 0.06
20 1 0.03
21 2 0.06
22 17 0.49
ACGTcount: A:0.43, C:0.09, G:0.29, T:0.19
Consensus pattern (22 bp):
AAAAAGTGGGGAATTTAAGCCG
Found at i:22878688 original size:38 final size:38
Alignment explanation
Indices: 22878646--22878722 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
22878636 CGAGAGTTGT
*
22878646 CAAAAAGTGGGGAATTTAAGCCGAAAAAGTGATATGTC
1 CAAAAAGTGGGGAATTTAAGCCGAAAAAGTGAGATGTC
*
22878684 CAAAAAGTGGGGAATTTAAGCCGAAAGAGTGAGATGTC
1 CAAAAAGTGGGGAATTTAAGCCGAAAAAGTGAGATGTC
22878722 C
1 C
22878723 CTAACACCTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.40, C:0.12, G:0.29, T:0.19
Consensus pattern (38 bp):
CAAAAAGTGGGGAATTTAAGCCGAAAAAGTGAGATGTC
Found at i:22881839 original size:124 final size:126
Alignment explanation
Indices: 22881618--22881987 Score: 566
Period size: 125 Copynumber: 3.0 Consensus size: 126
22881608 GATGTATCTG
* * * *
22881618 AAAAATAATTTTAAAAAGATGTTTATGAATAAATAGTGTAAAAAACGCTTCAAGCAGGATGCACT
1 AAAAATAATTTTGAAAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACT
22881683 GTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGCT-TTTTTCTACAGTAGTTTCTAA
66 GTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGCTATTTTTCTACAGTAGTTTCTAA
* * *
22881743 AAAAATAATTTTGAGAAGATGTTTCTGAA-AAATAGTGTCAAAAATGCTTCAAGCAGGATCCACT
1 AAAAATAATTTTGAAAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACT
* * *
22881807 GTCAGCAAAAGTACTGAAAAAAGCTCCAACGTGGACGCTATTTTTCTACAGTAGTTTTTGA
66 GTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGCTATTTTTCTACAGTAGTTTCTAA
*
22881868 AAAAATAATTTTGAAAAGATGTTTCTAAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCA-T
1 AAAAATAATTTTGAAAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACT
* **** *
22881932 GTCAACAAAAGTACTGAAAAAAGCTCCCATAAAGACGCTCTTTTTCTACAGTAGTT
66 GTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGCTATTTTTCTACAGTAGTT
22881988 CCTATTTGGC
Statistics
Matches: 223, Mismatches: 20, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
124 70 0.31
125 122 0.55
126 31 0.14
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.28
Consensus pattern (126 bp):
AAAAATAATTTTGAAAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACT
GTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGCTATTTTTCTACAGTAGTTTCTAA
Found at i:22885217 original size:21 final size:21
Alignment explanation
Indices: 22885193--22885240 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
22885183 GTAGGGGTTG
*
22885193 TGGTTGCTCCGGC-GGGGATTC
1 TGGTTGCTCCGACAGGGGA-TC
*
22885214 TGGTTCCTCCGACAGGGGATC
1 TGGTTGCTCCGACAGGGGATC
22885235 TGGTTG
1 TGGTTG
22885241 TGGGTGTTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.08, C:0.23, G:0.40, T:0.29
Consensus pattern (21 bp):
TGGTTGCTCCGACAGGGGATC
Found at i:22885628 original size:30 final size:29
Alignment explanation
Indices: 22885577--22885667 Score: 103
Period size: 30 Copynumber: 3.1 Consensus size: 29
22885567 GTTAAAGTAT
*
22885577 TGGGCCGAGTGACTGTGTGGGCGCTGTTGA
1 TGGGCCG-GTGATTGTGTGGGCGCTGTTGA
* * *
22885607 TGGGCCTGGTGATTGTATGGGCACTATTGA
1 TGGGCC-GGTGATTGTGTGGGCGCTGTTGA
*
22885637 TGGGCCCGGTGATTCTGT-GGCGCTGTTGA
1 TGGG-CCGGTGATTGTGTGGGCGCTGTTGA
22885666 TG
1 TG
22885668 AGCCCGCGTC
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
29 11 0.22
30 37 0.73
31 3 0.06
ACGTcount: A:0.11, C:0.16, G:0.42, T:0.31
Consensus pattern (29 bp):
TGGGCCGGTGATTGTGTGGGCGCTGTTGA
Found at i:22886149 original size:7 final size:7
Alignment explanation
Indices: 22886139--22886171 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
22886129 TTATATACAT
22886139 AATACTA
1 AATACTA
*
22886146 AATAGTA
1 AATACTA
22886153 AATACTA
1 AATACTA
22886160 AATACTA
1 AATACTA
22886167 AATAC
1 AATAC
22886172 GAATCGACTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.58, C:0.12, G:0.03, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:22888864 original size:30 final size:31
Alignment explanation
Indices: 22888828--22888894 Score: 118
Period size: 30 Copynumber: 2.2 Consensus size: 31
22888818 CAAAAAACTA
22888828 TCTCACAACTCAATGTTTCCATATATTTC-T
1 TCTCACAACTCAATGTTTCCATATATTTCTT
*
22888858 TCTCACAAGTCAATGTTTCCATATATTTCTT
1 TCTCACAACTCAATGTTTCCATATATTTCTT
22888889 TCTCAC
1 TCTCAC
22888895 CTACCTGTGT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
30 28 0.80
31 7 0.20
ACGTcount: A:0.25, C:0.27, G:0.04, T:0.43
Consensus pattern (31 bp):
TCTCACAACTCAATGTTTCCATATATTTCTT
Found at i:22888956 original size:24 final size:24
Alignment explanation
Indices: 22888911--22888957 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
22888901 GTGTTGCAGG
*
22888911 TAAATATTTTTTATAAATTAAAAA
1 TAAATATATTTTATAAATTAAAAA
22888935 TAAATAATATTTTATAAA-TAAAA
1 TAAAT-ATATTTTATAAATTAAAA
22888958 GAAGTTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
TAAATATATTTTATAAATTAAAAA
Found at i:22890072 original size:17 final size:16
Alignment explanation
Indices: 22890044--22890096 Score: 97
Period size: 16 Copynumber: 3.2 Consensus size: 16
22890034 TTTGGTTCGC
22890044 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
22890060 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
22890077 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
22890093 TGTA
1 TGTA
22890097 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:22890161 original size:44 final size:45
Alignment explanation
Indices: 22890077--22890167 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
22890067 GGATTAGAGG
* * *
22890077 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
22890122 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
22890166 TG
1 TG
22890168 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:22890353 original size:18 final size:19
Alignment explanation
Indices: 22890332--22890368 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
22890322 TTATTATTAA
22890332 ATAT-ATTT-TAATTAAAAT
1 ATATAATTTATAA-TAAAAT
22890350 ATATAATTTATAATAAAAT
1 ATATAATTTATAATAAAAT
22890369 TCTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.24
19 10 0.59
20 3 0.18
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATATAATTTATAATAAAAT
Found at i:22890476 original size:59 final size:58
Alignment explanation
Indices: 22890410--22890595 Score: 157
Period size: 59 Copynumber: 3.1 Consensus size: 58
22890400 CTCAAATCAT
* *
22890410 AATATATGATACTATAAAATATAATTTGAAATAATTAATATTAAATATATTTTAATTAA
1 AATATATGATACTATAAAATATAATTT-AAATAATTATTATTAAATATATTTTAATAAA
* * * * *
22890469 AATATATGAT-TTAATAAAATTCTTAATATTAAAT-ATTCTTATATGAAT-T-TTCTAA-AATCA
1 AATATATGATACT-ATAAAA-T-ATAAT-TTAAATAATTATTAT-TAAATATATTTTAATAA--A
* **
22890529 TAATATATAATACTATAAAATATAATTTAACATAATTATTATTAAATATAAGTTAATAAA
1 -AATATATGATACTATAAAATATAATTTAA-ATAATTATTATTAAATATATTTTAATAAA
22890589 AATATAT
1 AATATAT
22890596 AATTTATCAT
Statistics
Matches: 98, Mismatches: 15, Indels: 28
0.70 0.11 0.20
Matches are distributed among these distances:
58 6 0.06
59 38 0.39
60 19 0.19
61 30 0.31
62 5 0.05
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.42
Consensus pattern (58 bp):
AATATATGATACTATAAAATATAATTTAAATAATTATTATTAAATATATTTTAATAAA
Found at i:22890533 original size:120 final size:120
Alignment explanation
Indices: 22890312--22890601 Score: 456
Period size: 120 Copynumber: 2.4 Consensus size: 120
22890302 TTAATCATAT
22890312 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTATAATAAAATTCTTAATA
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAA-TT-TAATAAAATTCTTAATA
* * *
22890377 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
64 ATAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * *
22890434 TTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAT
1 TTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
*
22890498 TAAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATAA
65 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
** *
22890554 TTTAACATAATTATTATTAAATATAAGTTAATAAAAATATATAATTTA
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTA
22890602 TCATCATACT
Statistics
Matches: 154, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
119 2 0.01
120 109 0.71
121 2 0.01
122 39 0.25
123 2 0.01
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:22897954 original size:1 final size:1
Alignment explanation
Indices: 22897936--22898085 Score: 237
Period size: 1 Copynumber: 150.0 Consensus size: 1
22897926 CTTGCCTCTC
* * * * * * *
22897936 TTTTGTTTTTTGTCTTTTTTGTTTTTTGTTTTTTTTTTTGTTTTTTGTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
22898001 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
22898066 TTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTT
22898086 AAATAAGAAA
Statistics
Matches: 135, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
1 135 1.00
ACGTcount: A:0.00, C:0.01, G:0.04, T:0.95
Consensus pattern (1 bp):
T
Found at i:22898521 original size:73 final size:74
Alignment explanation
Indices: 22898406--22898551 Score: 249
Period size: 73 Copynumber: 2.0 Consensus size: 74
22898396 CATCAGTGGT
*
22898406 AATGTTATGCATTATTTCTTTTGGCTATTTCTTGGTTTCTTCTAAGCACTATCATGGTGATGGTA
1 AATGTTATGCATTATTTCTTTTGCCTATTTCTTGGTTTCTTCTAAGCACTATCATGGTGATGGTA
22898471 ATAATTTTC
66 ATAATTTTC
** *
22898480 AATGTTATGTTTTATTTC-TTTGCCTATTTCTTGGTTTCTTCTAAGCACTATTATGGTGATGGTA
1 AATGTTATGCATTATTTCTTTTGCCTATTTCTTGGTTTCTTCTAAGCACTATCATGGTGATGGTA
22898544 ATAATTTT
66 ATAATTTT
22898552 TAAGTTTGCC
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
73 52 0.76
74 16 0.24
ACGTcount: A:0.21, C:0.12, G:0.16, T:0.51
Consensus pattern (74 bp):
AATGTTATGCATTATTTCTTTTGCCTATTTCTTGGTTTCTTCTAAGCACTATCATGGTGATGGTA
ATAATTTTC
Found at i:22908722 original size:20 final size:22
Alignment explanation
Indices: 22908684--22908728 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
22908674 TTGAAGATAT
22908684 TTTTTTAAAAGATATTTTTGAA
1 TTTTTTAAAAGATATTTTTGAA
*
22908706 TTTTTTAAAA-TTA-TTTTGAA
1 TTTTTTAAAAGATATTTTTGAA
22908726 TTT
1 TTT
22908729 CTTTTGTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 10 0.45
21 2 0.09
22 10 0.45
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (22 bp):
TTTTTTAAAAGATATTTTTGAA
Found at i:22908733 original size:22 final size:23
Alignment explanation
Indices: 22908682--22908733 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
22908672 AATTGAAGAT
22908682 ATTTTTTTAAAAGATATTTTTGA
1 ATTTTTTTAAAAGATATTTTTGA
*
22908705 A-TTTTTTAAAA-TTA-TTTTGA
1 ATTTTTTTAAAAGATATTTTTGA
22908725 ATTTCTTTT
1 ATTT-TTTT
22908734 GTAATTTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 7 0.27
21 4 0.15
22 14 0.54
23 1 0.04
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.62
Consensus pattern (23 bp):
ATTTTTTTAAAAGATATTTTTGA
Found at i:22914566 original size:10 final size:10
Alignment explanation
Indices: 22914534--22914567 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
22914524 TATTTTGTCC
22914534 CTTTTTGACT
1 CTTTTTGACT
*
22914544 CGTTTTTGGCT
1 C-TTTTTGACT
22914555 CTTTTTGACT
1 CTTTTTGACT
22914565 CTT
1 CTT
22914568 GGTACTCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.06, C:0.21, G:0.15, T:0.59
Consensus pattern (10 bp):
CTTTTTGACT
Found at i:22916112 original size:16 final size:16
Alignment explanation
Indices: 22916093--22916126 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
22916083 CAAAATAAAG
22916093 AAAATCATAAGAGGGA
1 AAAATCATAAGAGGGA
*
22916109 AAAATCATAAGTGGGA
1 AAAATCATAAGAGGGA
22916125 AA
1 AA
22916127 GAGGTGAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.56, C:0.06, G:0.24, T:0.15
Consensus pattern (16 bp):
AAAATCATAAGAGGGA
Found at i:22929473 original size:172 final size:173
Alignment explanation
Indices: 22929174--22929498 Score: 458
Period size: 172 Copynumber: 1.9 Consensus size: 173
22929164 TACTTTTCCT
*
22929174 TCAACATCTTCTAATATTATACACATACTTAGTAAAATATAAAAATTGTTTTCATAATTATACAC
1 TCAACATCTTCTAATATTATACACATACTTAGTAAAATATAAAAATTATTTTCATAATTATACAC
*
22929239 TTTATTTGATTTGAGTTTAAGTTCAGCTCAAGCACGAGGCTAAGTCAAGTTTGAGCTCTTGATTT
66 TTTATTTGATTTGAGTTTAAGTTCAGCTCAAGCACGAAGCTAAGTCAAGTTTGAGCTCTTGATTT
22929304 GACTTAATGATAATCAGGCCTATTCAAGTTTAGCTACTGCTTC
131 GACTTAATGATAATCAGGCCTATTCAAGTTTAGCTACTGCTTC
* * * * ** * * * **
22929347 TCAATATCTTCTAGTTTTATACACATATTTAGTAAAATAT-AATTTTATTTTTATATTTTTACGT
1 TCAACATCTTCTAATATTATACACATACTTAGTAAAATATAAAAATTATTTTCATAATTATACAC
* ** *
22929411 TTTATTT-AGTTTGAGTTTAAGTTCCGC-CAAGCTTGAAGCTAATTCAAGTTTAGAGCTCTTGAT
66 TTTATTTGA-TTTGAGTTTAAGTTCAGCTCAAGCACGAAGCTAAGTCAAGTTT-GAGCTCTTGAT
22929474 TTGACTTAATGATAATCAGGCCTAT
129 TTGACTTAATGATAATCAGGCCTAT
22929499 CCGAGTTGAG
Statistics
Matches: 133, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
171 21 0.16
172 76 0.57
173 36 0.27
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.42
Consensus pattern (173 bp):
TCAACATCTTCTAATATTATACACATACTTAGTAAAATATAAAAATTATTTTCATAATTATACAC
TTTATTTGATTTGAGTTTAAGTTCAGCTCAAGCACGAAGCTAAGTCAAGTTTGAGCTCTTGATTT
GACTTAATGATAATCAGGCCTATTCAAGTTTAGCTACTGCTTC
Found at i:22930427 original size:172 final size:173
Alignment explanation
Indices: 22930132--22930456 Score: 469
Period size: 172 Copynumber: 1.9 Consensus size: 173
22930122 TACTTTTCCT
*
22930132 TCAACATCTTCTAATATTATACACATACTTAGTAAAATATAAAAATTGTTTTTATATTTATAAAA
1 TCAACATCTTCTAATATTATACACATACTTAGTAAAATATAAAAATTATTTTTATATTTATAAAA
22930197 TTTATTTGATTTGAGTTTAAGTTCAGCTCAAGCTCAAGGCTAAGTCAAGTTTGAGCTCTTGATTT
66 TTTATTTGATTTGAGTTTAAGTTCAGCTCAAGCTCAAGGCTAAGTCAAGTTTGAGCTCTTGATTT
22930262 GACTTAATGATAATCAGGCCTATTCAAGTTTAGCTACTGCTTC
131 GACTTAATGATAATCAGGCCTATTCAAGTTTAGCTACTGCTTC
* * * * * ** * ***
22930305 TCAATATCTTCTAGTTTTATACGCATATTTAGTAAAATAT-AATTTTATTTTTATATTTTTACGT
1 TCAACATCTTCTAATATTATACACATACTTAGTAAAATATAAAAATTATTTTTATATTTATAAAA
* *
22930369 TTTATTT-AGTTTGAGTTTAAGTTCAGC-CAAGCTTGAA-GCTAATTCAAGTTTAGAGCTCTTGA
66 TTTATTTGA-TTTGAGTTTAAGTTCAGCTCAAGC-TCAAGGCTAAGTCAAGTTT-GAGCTCTTGA
22930431 TTTGACTTAATGATAATCAGGCCTAT
128 TTTGACTTAATGATAATCAGGCCTAT
22930457 GCGAGTTGAG
Statistics
Matches: 135, Mismatches: 14, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
171 19 0.14
172 81 0.60
173 35 0.26
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.42
Consensus pattern (173 bp):
TCAACATCTTCTAATATTATACACATACTTAGTAAAATATAAAAATTATTTTTATATTTATAAAA
TTTATTTGATTTGAGTTTAAGTTCAGCTCAAGCTCAAGGCTAAGTCAAGTTTGAGCTCTTGATTT
GACTTAATGATAATCAGGCCTATTCAAGTTTAGCTACTGCTTC
Found at i:22930430 original size:958 final size:958
Alignment explanation
Indices: 22928575--22930490 Score: 3751
Period size: 958 Copynumber: 2.0 Consensus size: 958
22928565 CTCTCCACTT
22928575 TTTATCTGCCGCATGTCACTCATCTCCCTTTGTGCCCTGCATCTCGATCACACCCCAACCTTCCG
1 TTTATCTGCCGCATGTCACTCATCTCCCTTTGTGCCCTGCATCTCGATCACACCCCAACCTTCCG
22928640 GCGCGCGTCTCCCCAATCCCTTACCCCGCCACTCGGTCCTTTTTCACTTCGTCCAACAATGTTGA
66 GCGCGCGTCTCCCCAATCCCTTACCCCGCCACTCGGTCCTTTTTCACTTCGTCCAACAATGTTGA
22928705 AGAATCTATCCTTCCGGTTCGTGCAATCGTATCATTGCTTGATGGTTACCATAATCTCACTGGCT
131 AGAATCTATCCTTCCGGTTCGTGCAATCGTATCATTGCTTGATGGTTACCATAATCTCACTGGCT
22928770 TCCCTTGGTAGGTCAATTTCTTCTCTCTTGCCCAGAATAAGAAGGAAAATGGAAATTTTGTATTT
196 TCCCTTGGTAGGTCAATTTCTTCTCTCTTGCCCAGAATAAGAAGGAAAATGGAAATTTTGTATTT
22928835 GAAGTAAAAGAAATTCGAAATCACTTTTGCAGGTGGATAACTATTGTAACTTCCACCATGGCTAT
261 GAAGTAAAAGAAATTCGAAATCACTTTTGCAGGTGGATAACTATTGTAACTTCCACCATGGCTAT
22928900 GAGATTTGCATTGTTTCCCGTAGTAGTTATTCATCTTCAAAAGCTGAAAAAGATTGGAGAGTTAG
326 GAGATTTGCATTGTTTCCCGTAGTAGTTATTCATCTTCAAAAGCTGAAAAAGATTGGAGAGTTAG
22928965 CTCCTAAATGTATGTTTCTTTTATCCTTATTTAAAATCATAACATCGCTTGCTTGGAGTATGAAT
391 CTCCTAAATGTATGTTTCTTTTATCCTTATTTAAAATCATAACATCGCTTGCTTGGAGTATGAAT
22929030 TAGTCAAGAACTCAAGATAGTAGGGTTCGGCTTTATGTATGCTGATCTTGCATTGCTCGAGTAAT
456 TAGTCAAGAACTCAAGATAGTAGGGTTCGGCTTTATGTATGCTGATCTTGCATTGCTCGAGTAAT
22929095 TAATCTAGCCGAGGTCTGGTATTTTTGTATTGGCCCGAGTGGCTTGTGTTGTGAGTTAGATATGG
521 TAATCTAGCCGAGGTCTGGTATTTTTGTATTGGCCCGAGTGGCTTGTGTTGTGAGTTAGATATGG
22929160 TTTATACTTTTCCTTCAACATCTTCTAATATTATACACATACTTAGTAAAATATAAAAATTGTTT
586 TTTATACTTTTCCTTCAACATCTTCTAATATTATACACATACTTAGTAAAATATAAAAATTGTTT
* * *
22929225 TCATAATTATACACTTTATTTGATTTGAGTTTAAGTTCAGCTCAAGCACGAGGCTAAGTCAAGTT
651 TCATAATTATAAAATTTATTTGATTTGAGTTTAAGTTCAGCTCAAGCACAAGGCTAAGTCAAGTT
22929290 TGAGCTCTTGATTTGACTTAATGATAATCAGGCCTATTCAAGTTTAGCTACTGCTTCTCAATATC
716 TGAGCTCTTGATTTGACTTAATGATAATCAGGCCTATTCAAGTTTAGCTACTGCTTCTCAATATC
22929355 TTCTAGTTTTATACACATATTTAGTAAAATATAATTTTATTTTTATATTTTTACGTTTTATTTAG
781 TTCTAGTTTTATACACATATTTAGTAAAATATAATTTTATTTTTATATTTTTACGTTTTATTTAG
*
22929420 TTTGAGTTTAAGTTCCGCCAAGCTTGAAGCTAATTCAAGTTTAGAGCTCTTGATTTGACTTAATG
846 TTTGAGTTTAAGTTCAGCCAAGCTTGAAGCTAATTCAAGTTTAGAGCTCTTGATTTGACTTAATG
22929485 ATAATCAGGCCTATCCGAGTTGAGCTTCTGTGGCTCAGTTATATTTTA
911 ATAATCAGGCCTATCCGAGTTGAGCTTCTGTGGCTCAGTTATATTTTA
22929533 TTTATCTGCCGCATGTCACTCATCTCCCTTTGTGCCCTGCATCTCGATCACACCCCAACCTTCCG
1 TTTATCTGCCGCATGTCACTCATCTCCCTTTGTGCCCTGCATCTCGATCACACCCCAACCTTCCG
22929598 GCGCGCGTCTCCCCAATCCCTTACCCCGCCACTCGGTCCTTTTTCACTTCGTCCAACAATGTTGA
66 GCGCGCGTCTCCCCAATCCCTTACCCCGCCACTCGGTCCTTTTTCACTTCGTCCAACAATGTTGA
22929663 AGAATCTATCCTTCCGGTTCGTGCAATCGTATCATTGCTTGATGGTTACCATAATCTCACTGGCT
131 AGAATCTATCCTTCCGGTTCGTGCAATCGTATCATTGCTTGATGGTTACCATAATCTCACTGGCT
22929728 TCCCTTGGTAGGTCAATTTCTTCTCTCTTGCCCAGAATAAGAAGGAAAATGGAAATTTTGTATTT
196 TCCCTTGGTAGGTCAATTTCTTCTCTCTTGCCCAGAATAAGAAGGAAAATGGAAATTTTGTATTT
22929793 GAAGTAAAAGAAATTCGAAATCACTTTTGCAGGTGGATAACTATTGTAACTTCCACCATGGCTAT
261 GAAGTAAAAGAAATTCGAAATCACTTTTGCAGGTGGATAACTATTGTAACTTCCACCATGGCTAT
22929858 GAGATTTGCATTGTTTCCCGTAGTAGTTATTCATCTTCAAAAGCTGAAAAAGATTGGAGAGTTAG
326 GAGATTTGCATTGTTTCCCGTAGTAGTTATTCATCTTCAAAAGCTGAAAAAGATTGGAGAGTTAG
22929923 CTCCTAAATGTATGTTTCTTTTATCCTTATTTAAAATCATAACATCGCTTGCTTGGAGTATGAAT
391 CTCCTAAATGTATGTTTCTTTTATCCTTATTTAAAATCATAACATCGCTTGCTTGGAGTATGAAT
22929988 TAGTCAAGAACTCAAGATAGTAGGGTTCGGCTTTATGTATGCTGATCTTGCATTGCTCGAGTAAT
456 TAGTCAAGAACTCAAGATAGTAGGGTTCGGCTTTATGTATGCTGATCTTGCATTGCTCGAGTAAT
22930053 TAATCTAGCCGAGGTCTGGTATTTTTGTATTGGCCCGAGTGGCTTGTGTTGTGAGTTAGATATGG
521 TAATCTAGCCGAGGTCTGGTATTTTTGTATTGGCCCGAGTGGCTTGTGTTGTGAGTTAGATATGG
22930118 TTTATACTTTTCCTTCAACATCTTCTAATATTATACACATACTTAGTAAAATATAAAAATTGTTT
586 TTTATACTTTTCCTTCAACATCTTCTAATATTATACACATACTTAGTAAAATATAAAAATTGTTT
* * *
22930183 TTATATTTATAAAATTTATTTGATTTGAGTTTAAGTTCAGCTCAAGCTCAAGGCTAAGTCAAGTT
651 TCATAATTATAAAATTTATTTGATTTGAGTTTAAGTTCAGCTCAAGCACAAGGCTAAGTCAAGTT
22930248 TGAGCTCTTGATTTGACTTAATGATAATCAGGCCTATTCAAGTTTAGCTACTGCTTCTCAATATC
716 TGAGCTCTTGATTTGACTTAATGATAATCAGGCCTATTCAAGTTTAGCTACTGCTTCTCAATATC
*
22930313 TTCTAGTTTTATACGCATATTTAGTAAAATATAATTTTATTTTTATATTTTTACGTTTTATTTAG
781 TTCTAGTTTTATACACATATTTAGTAAAATATAATTTTATTTTTATATTTTTACGTTTTATTTAG
22930378 TTTGAGTTTAAGTTCAGCCAAGCTTGAAGCTAATTCAAGTTTAGAGCTCTTGATTTGACTTAATG
846 TTTGAGTTTAAGTTCAGCCAAGCTTGAAGCTAATTCAAGTTTAGAGCTCTTGATTTGACTTAATG
*
22930443 ATAATCAGGCCTATGCGAGTTGAGCTTCTGTGGCTCAGTTATATTTTA
911 ATAATCAGGCCTATCCGAGTTGAGCTTCTGTGGCTCAGTTATATTTTA
22930491 ACCCAATCTT
Statistics
Matches: 949, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
958 949 1.00
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (958 bp):
TTTATCTGCCGCATGTCACTCATCTCCCTTTGTGCCCTGCATCTCGATCACACCCCAACCTTCCG
GCGCGCGTCTCCCCAATCCCTTACCCCGCCACTCGGTCCTTTTTCACTTCGTCCAACAATGTTGA
AGAATCTATCCTTCCGGTTCGTGCAATCGTATCATTGCTTGATGGTTACCATAATCTCACTGGCT
TCCCTTGGTAGGTCAATTTCTTCTCTCTTGCCCAGAATAAGAAGGAAAATGGAAATTTTGTATTT
GAAGTAAAAGAAATTCGAAATCACTTTTGCAGGTGGATAACTATTGTAACTTCCACCATGGCTAT
GAGATTTGCATTGTTTCCCGTAGTAGTTATTCATCTTCAAAAGCTGAAAAAGATTGGAGAGTTAG
CTCCTAAATGTATGTTTCTTTTATCCTTATTTAAAATCATAACATCGCTTGCTTGGAGTATGAAT
TAGTCAAGAACTCAAGATAGTAGGGTTCGGCTTTATGTATGCTGATCTTGCATTGCTCGAGTAAT
TAATCTAGCCGAGGTCTGGTATTTTTGTATTGGCCCGAGTGGCTTGTGTTGTGAGTTAGATATGG
TTTATACTTTTCCTTCAACATCTTCTAATATTATACACATACTTAGTAAAATATAAAAATTGTTT
TCATAATTATAAAATTTATTTGATTTGAGTTTAAGTTCAGCTCAAGCACAAGGCTAAGTCAAGTT
TGAGCTCTTGATTTGACTTAATGATAATCAGGCCTATTCAAGTTTAGCTACTGCTTCTCAATATC
TTCTAGTTTTATACACATATTTAGTAAAATATAATTTTATTTTTATATTTTTACGTTTTATTTAG
TTTGAGTTTAAGTTCAGCCAAGCTTGAAGCTAATTCAAGTTTAGAGCTCTTGATTTGACTTAATG
ATAATCAGGCCTATCCGAGTTGAGCTTCTGTGGCTCAGTTATATTTTA
Found at i:22938657 original size:21 final size:21
Alignment explanation
Indices: 22938622--22938662 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
22938612 GTTTAGTTGA
* *
22938622 TTTTTAATATATATTTTTTAC
1 TTTTTAAGATATATTATTTAC
*
22938643 TTTTTAAGATTTATTATTTA
1 TTTTTAAGATATATTATTTA
22938663 TAAAACAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (21 bp):
TTTTTAAGATATATTATTTAC
Found at i:22939285 original size:17 final size:18
Alignment explanation
Indices: 22939258--22939292 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
22939248 TTTATACCAT
*
22939258 ATAACTTTTATCTATTAA
1 ATAACTTTTATATATTAA
22939276 ATAA-TTTTATATATTAA
1 ATAACTTTTATATATTAA
22939293 TTTAATTGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (18 bp):
ATAACTTTTATATATTAA
Found at i:22939328 original size:7 final size:6
Alignment explanation
Indices: 22939277--22939327 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
22939267 ATCTATTAAA
* *
22939277 TAATTT TATATAT TAA-TT TAATTG TAATTT GTAGATTT TAATTT TAATTT
1 TAATTT TA-ATTT TAATTT TAATTT TAATTT -TA-ATTT TAATTT TAATTT
22939327 T
1 T
22939328 TGGATTGGGT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
5 4 0.11
6 20 0.54
7 9 0.24
8 4 0.11
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (6 bp):
TAATTT
Found at i:22946187 original size:58 final size:58
Alignment explanation
Indices: 22946113--22946231 Score: 152
Period size: 58 Copynumber: 2.1 Consensus size: 58
22946103 TATAAATATT
* *
22946113 AAGGTCCAAGGTATGAA-T-TTCTACTACTAAAAGTGTTATTGCATAATAATGATTGATG
1 AAGGTCCAAGGCATGAACTCTTCT--TACTAAAAGTGTTATTGCATAATAATGATTAATG
** * *
22946171 AAGGTCCAAGGCATGAACTCTTCTTGTTAAAAGTGTTATTGCGTAATGATGATTAATG
1 AAGGTCCAAGGCATGAACTCTTCTTACTAAAAGTGTTATTGCATAATAATGATTAATG
22946229 AAG
1 AAG
22946232 TCATGACAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
58 48 0.91
59 1 0.02
60 4 0.08
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (58 bp):
AAGGTCCAAGGCATGAACTCTTCTTACTAAAAGTGTTATTGCATAATAATGATTAATG
Found at i:22953728 original size:29 final size:30
Alignment explanation
Indices: 22953678--22953741 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 30
22953668 TTGTGAAGAA
*
22953678 CCTAACCTTTAGAACTCTTTGAAGAGAGCT
1 CCTAACCTTTAGAACTCATTGAAGAGAGCT
* *
22953708 CCTAACC-TTGGAACTCATTGAAGGGAGCT
1 CCTAACCTTTAGAACTCATTGAAGAGAGCT
*
22953737 TCTAA
1 CCTAA
22953742 TCATGAATTC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 23 0.77
30 7 0.23
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (30 bp):
CCTAACCTTTAGAACTCATTGAAGAGAGCT
Found at i:22954336 original size:29 final size:29
Alignment explanation
Indices: 22954278--22954336 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
22954268 TGAAGATATA
**
22954278 TGGAACCTGTTGAAAGGAGCTCCTGCCCT
1 TGGAACCTGTTGAAAGGAGCTCCTAACCT
* * *
22954307 TGGAACTTGTTGAAGGGAGCTCTTAACCT
1 TGGAACCTGTTGAAAGGAGCTCCTAACCT
22954336 T
1 T
22954337 AAACTCATTG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (29 bp):
TGGAACCTGTTGAAAGGAGCTCCTAACCT
Found at i:22954478 original size:15 final size:15
Alignment explanation
Indices: 22954454--22954483 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22954444 TAAGAATGAG
*
22954454 AACTATAATTAAGGA
1 AACTAAAATTAAGGA
22954469 AACTAAAATTAAGGA
1 AACTAAAATTAAGGA
22954484 CTTCTAATTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.13, T:0.23
Consensus pattern (15 bp):
AACTAAAATTAAGGA
Found at i:22958114 original size:13 final size:14
Alignment explanation
Indices: 22958096--22958128 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
22958086 TATGTTTTCC
22958096 TTTATATGT-AATA
1 TTTATATGTAAATA
22958109 TTTATATGTCAAATA
1 TTTATATGT-AAATA
22958124 TTTAT
1 TTTAT
22958129 TTTCTCCACC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.03, G:0.06, T:0.55
Consensus pattern (14 bp):
TTTATATGTAAATA
Found at i:22959135 original size:42 final size:41
Alignment explanation
Indices: 22959050--22959137 Score: 104
Period size: 43 Copynumber: 2.1 Consensus size: 41
22959040 TTGAAGTTAA
*
22959050 TTTAATAGTTTTATTTTTATTTTGAAGAAAATAAGTTACATT
1 TTTAATAGTTTTATTTTTATTTTGAAGAAAATAAATTA-ATT
* ** *
22959092 TTTAATTGTTTTATTTTTTATTTTGAAGCTAATAAAATTATTT
1 TTTAATAGTTTTA-TTTTTATTTTGAAGAAAAT-AAATTAATT
22959135 TTT
1 TTT
22959138 TGAATTTAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
42 12 0.31
43 22 0.56
44 5 0.13
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (41 bp):
TTTAATAGTTTTATTTTTATTTTGAAGAAAATAAATTAATT
Found at i:22960366 original size:22 final size:22
Alignment explanation
Indices: 22960338--22960379 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
22960328 TGAATAAACC
*
22960338 AAATAAACTTAATTTCTGTAGA
1 AAATAAACTTAATATCTGTAGA
22960360 AAATAAACTTAATATCTGTA
1 AAATAAACTTAATATCTGTA
22960380 AACTGAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.48, C:0.10, G:0.07, T:0.36
Consensus pattern (22 bp):
AAATAAACTTAATATCTGTAGA
Found at i:22962759 original size:19 final size:19
Alignment explanation
Indices: 22962737--22962776 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
22962727 GCTTGACACA
*
22962737 TGCCTGTGCCCATGACCCG
1 TGCCCGTGCCCATGACCCG
*
22962756 TGCCCGTGTCCATGACCCG
1 TGCCCGTGCCCATGACCCG
22962775 TG
1 TG
22962777 TCCCACACAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.10, C:0.40, G:0.28, T:0.23
Consensus pattern (19 bp):
TGCCCGTGCCCATGACCCG
Found at i:22963474 original size:19 final size:19
Alignment explanation
Indices: 22963452--22963510 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
22963442 GAAGGAGTAA
22963452 GCATAAAGCTTAGTAAGTT
1 GCATAAAGCTTAGTAAGTT
** *
22963471 GCATATAA--AAAGTAA--A
1 GCATA-AAGCTTAGTAAGTT
22963487 GCATAAAGCTTAGTAAGTT
1 GCATAAAGCTTAGTAAGTT
22963506 GCATA
1 GCATA
22963511 TAAAAAAGTA
Statistics
Matches: 29, Mismatches: 6, Indels: 10
0.64 0.13 0.22
Matches are distributed among these distances:
15 2 0.07
16 5 0.17
17 5 0.17
18 5 0.17
19 10 0.34
20 2 0.07
ACGTcount: A:0.44, C:0.10, G:0.19, T:0.27
Consensus pattern (19 bp):
GCATAAAGCTTAGTAAGTT
Found at i:22963479 original size:21 final size:21
Alignment explanation
Indices: 22963454--22963514 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
22963444 AGGAGTAAGC
22963454 ATAAAGCTTAGTAAGTTGCAT
1 ATAAAGCTTAGTAAGTTGCAT
* *
22963475 ATAAA---AAGTAA--AGC--
1 ATAAAGCTTAGTAAGTTGCAT
22963489 ATAAAGCTTAGTAAGTTGCAT
1 ATAAAGCTTAGTAAGTTGCAT
22963510 ATAAA
1 ATAAA
22963515 AAAGTAACAA
Statistics
Matches: 29, Mismatches: 4, Indels: 14
0.62 0.09 0.30
Matches are distributed among these distances:
14 5 0.17
16 2 0.07
17 5 0.17
18 5 0.17
19 2 0.07
21 10 0.34
ACGTcount: A:0.48, C:0.08, G:0.16, T:0.28
Consensus pattern (21 bp):
ATAAAGCTTAGTAAGTTGCAT
Found at i:22963492 original size:35 final size:36
Alignment explanation
Indices: 22963450--22963521 Score: 137
Period size: 35 Copynumber: 2.0 Consensus size: 36
22963440 GAGAAGGAGT
22963450 AAGCATAAAGCTTAGTAAGTTGCATAT-AAAAAGTA
1 AAGCATAAAGCTTAGTAAGTTGCATATAAAAAAGTA
22963485 AAGCATAAAGCTTAGTAAGTTGCATATAAAAAAGTA
1 AAGCATAAAGCTTAGTAAGTTGCATATAAAAAAGTA
22963521 A
1 A
22963522 CAACATCAAC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 27 0.75
36 9 0.25
ACGTcount: A:0.50, C:0.08, G:0.17, T:0.25
Consensus pattern (36 bp):
AAGCATAAAGCTTAGTAAGTTGCATATAAAAAAGTA
Found at i:22963925 original size:48 final size:48
Alignment explanation
Indices: 22963850--22964021 Score: 184
Period size: 48 Copynumber: 3.6 Consensus size: 48
22963840 GTGAATTGCT
* * *
22963850 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCAAGGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCAATGCC
* * * ** * *
22963898 GATGCCATG-TCTCAGACATGGTTTTACACTAGCTCTTGTCTCAATGAC
1 GATGCCATGTTC-CAAACATGGTCTTACACTGGCTCTCATATCAATGCC
* * **
22963946 GATGCCATGTTCCAAACATGGTCTTTCATTGGCTCTCATATCGTTGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCAATGCC
* *
22963994 GATGCCATGTCCCAGACATGGTCTTACA
1 GATGCCATGTTCCAAACATGGTCTTACA
22964022 GTAGCACACC
Statistics
Matches: 99, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
47 2 0.02
48 95 0.96
49 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (48 bp):
GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCAATGCC
Found at i:22964014 original size:96 final size:96
Alignment explanation
Indices: 22963850--22964026 Score: 264
Period size: 96 Copynumber: 1.8 Consensus size: 96
22963840 GTGAATTGCT
* *
22963850 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCAAGGCCGATGCCATGTCTCAGAC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCAAGGCCGATGCCATGTCCCAGAC
*
22963915 ATGGTTTTACACTAGCTCTTGTCTCAATGAC
66 ATGGTCTTACACTAGCTCTTGTCTCAATGAC
* * * ***
22963946 GATGCCATGTTCCAAACATGGTCTTTCATTGGCTCTCATATCGTTGCCGATGCCATGTCCCAGAC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCAAGGCCGATGCCATGTCCCAGAC
*
22964011 ATGGTCTTACAGTAGC
66 ATGGTCTTACACTAGC
22964027 ACACCTATCA
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
96 71 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (96 bp):
GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCAAGGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTAGCTCTTGTCTCAATGAC
Found at i:22974443 original size:25 final size:26
Alignment explanation
Indices: 22974373--22974436 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 26
22974363 CAAGCACTAT
* *
22974373 TGGGAAGGTCACAAAGAGCCAATTTAA
1 TGGGAAGCTCACGAAGAGCC-ATTTAA
22974400 TGGGAAGCTCACGAAGAGCC-TTTAA
1 TGGGAAGCTCACGAAGAGCCATTTAA
*
22974425 TCGGGATGCTCA
1 T-GGGAAGCTCA
22974437 TAAGAGCTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
25 6 0.18
26 9 0.27
27 18 0.55
ACGTcount: A:0.33, C:0.19, G:0.28, T:0.20
Consensus pattern (26 bp):
TGGGAAGCTCACGAAGAGCCATTTAA
Found at i:22982324 original size:19 final size:18
Alignment explanation
Indices: 22982290--22982344 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
22982280 GTGCTTATTC
**
22982290 TTTGCACTTCAATGCCTT
1 TTTGCACTTCGGTGCCTT
22982308 ATTTGCACTTCGGTGCCTT
1 -TTTGCACTTCGGTGCCTT
22982327 TGATTGCACTTCGGTGCC
1 T--TTGCACTTCGGTGCC
22982345 CTTGATAGCG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
18 1 0.03
19 16 0.50
20 15 0.47
ACGTcount: A:0.13, C:0.27, G:0.20, T:0.40
Consensus pattern (18 bp):
TTTGCACTTCGGTGCCTT
Found at i:22982335 original size:20 final size:20
Alignment explanation
Indices: 22982310--22982350 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
22982300 AATGCCTTAT
*
22982310 TTGCACTTCGGTGCCTTTGA
1 TTGCACTTCGGTGCCCTTGA
22982330 TTGCACTTCGGTGCCCTTGA
1 TTGCACTTCGGTGCCCTTGA
22982350 T
1 T
22982351 AGCGCTACAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.10, C:0.27, G:0.24, T:0.39
Consensus pattern (20 bp):
TTGCACTTCGGTGCCCTTGA
Found at i:22985260 original size:16 final size:16
Alignment explanation
Indices: 22985239--22985272 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
22985229 GGTTGTCGTC
*
22985239 CTTAAGCCTAGGTTAG
1 CTTAAGCCTAGGTCAG
22985255 CTTAAGCCTAGGTCAG
1 CTTAAGCCTAGGTCAG
22985271 CT
1 CT
22985273 GACGTTCCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.29
Consensus pattern (16 bp):
CTTAAGCCTAGGTCAG
Found at i:22988983 original size:146 final size:146
Alignment explanation
Indices: 22988719--22989011 Score: 559
Period size: 146 Copynumber: 2.0 Consensus size: 146
22988709 CAAACAATGC
* *
22988719 TTTAGGTCATCCTTAAATATCTCAACATGCACAAATTTAATCAACCAAACAAAAAGAAGTTCAAC
1 TTTAGGTCATCCCTAAATATCTCAACATGCACAAATTTAATCAACCAAACAAAAACAAGTTCAAC
22988784 TATTTATTATTCGTATTAGTATGCTCGTTTTCTTGTATTTTCTATATCATTTGGTACAATTGATT
66 TATTTATTATTCGTATTAGTATGCTCGTTTTCTTGTATTTTCTATATCATTTGGTACAATTGATT
22988849 GCTTAATACCTATTTA
131 GCTTAATACCTATTTA
*
22988865 TTTAGGTCATCCCTAAATATCTCAACATGCACAAATTTAATCCACCAAACAAAAACAAGTTCAAC
1 TTTAGGTCATCCCTAAATATCTCAACATGCACAAATTTAATCAACCAAACAAAAACAAGTTCAAC
22988930 TATTTATTATTCGTATTAGTATGCTCGTTTTCTTGTATTTTCTATATCATTTGGTACAATTGATT
66 TATTTATTATTCGTATTAGTATGCTCGTTTTCTTGTATTTTCTATATCATTTGGTACAATTGATT
22988995 GCTTAATACCTATTTA
131 GCTTAATACCTATTTA
22989011 T
1 T
22989012 AGTGTAACAT
Statistics
Matches: 144, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
146 144 1.00
ACGTcount: A:0.32, C:0.17, G:0.09, T:0.41
Consensus pattern (146 bp):
TTTAGGTCATCCCTAAATATCTCAACATGCACAAATTTAATCAACCAAACAAAAACAAGTTCAAC
TATTTATTATTCGTATTAGTATGCTCGTTTTCTTGTATTTTCTATATCATTTGGTACAATTGATT
GCTTAATACCTATTTA
Found at i:22993628 original size:27 final size:28
Alignment explanation
Indices: 22993587--22993649 Score: 78
Period size: 27 Copynumber: 2.3 Consensus size: 28
22993577 NNNNNNNNNC
**
22993587 GAAATA-CCCTCAATTTGTAAAATTACCA
1 GAAATACCCCTCAATTTACAAAATTA-CA
22993615 -AAATACCCCT-AATTTACAAAATTACA
1 GAAATACCCCTCAATTTACAAAATTACA
22993641 GAAATACCC
1 GAAATACCC
22993650 TTGACTTTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
26 2 0.06
27 25 0.81
28 4 0.13
ACGTcount: A:0.46, C:0.24, G:0.05, T:0.25
Consensus pattern (28 bp):
GAAATACCCCTCAATTTACAAAATTACA
Found at i:22993700 original size:27 final size:27
Alignment explanation
Indices: 22993627--22993712 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
22993617 ATACCCCTAA
* *
22993627 TTTACAAAATTACAGAAATACCCTTGAC
1 TTTACAAAATTACTGAAATACCCTTG-G
*
22993655 TTT-CTAGAAATTA-TAGAAATACCATTGG
1 TTTAC-A-AAATTACT-GAAATACCCTTGG
22993683 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACTGAAATACCCTTGG
22993710 TTT
1 TTT
22993713 GTAGATTTAC
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
27 22 0.45
28 9 0.18
29 18 0.37
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTACTGAAATACCCTTGG
Found at i:22993788 original size:27 final size:27
Alignment explanation
Indices: 22993774--22993884 Score: 179
Period size: 27 Copynumber: 4.1 Consensus size: 27
22993764 TAGGTAAAAA
22993774 GACCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
22993801 GACCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
*
22993828 GACCGTAAAGCCCCTGTAAGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
* *
22993855 GACCGTAATA-CCCCTGTATGGTAAAAT
1 GACCGTAA-AGCCCCTGTAGGGTAAAGT
22993882 GAC
1 GAC
22993885 GAATATGCCC
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
27 79 0.99
28 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.20
Consensus pattern (27 bp):
GACCGTAAAGCCCCTGTAGGGTAAAGT
Found at i:22993824 original size:54 final size:54
Alignment explanation
Indices: 22993753--22993880 Score: 179
Period size: 54 Copynumber: 2.4 Consensus size: 54
22993743 AAATGACTAA
* *
22993753 AATACCCCTATTA-GGTAAAAAGACCGTAAAGCCCCTGTAGGGTAAAGTGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGTAAAGCCCCTGTAAGGTAAAGTGACCGT
**
22993807 AA-AGCCCCTGTAGGGTAAAGTGACCGTAAAGCCCCTGTAAGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGTAAAGCCCCTGTAAGGTAAAGTGACCGT
*
22993861 AATACCCCTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
22993881 TGACGAATAT
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
53 3 0.05
54 61 0.94
55 1 0.02
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.20
Consensus pattern (54 bp):
AATACCCCTGTAGGGTAAAAAGACCGTAAAGCCCCTGTAAGGTAAAGTGACCGT
Found at i:22994615 original size:20 final size:20
Alignment explanation
Indices: 22994590--22994676 Score: 140
Period size: 20 Copynumber: 4.3 Consensus size: 20
22994580 GATATGATAT
*
22994590 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
22994610 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
22994630 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
22994650 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
22994670 ACATGAT
1 ACATGAT
22994677 GTATTCATAA
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
20 61 0.97
21 2 0.03
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:22994802 original size:52 final size:51
Alignment explanation
Indices: 22994726--22994861 Score: 197
Period size: 52 Copynumber: 2.7 Consensus size: 51
22994716 GAGGAAGTGC
* *
22994726 AAAAGGGCTTATGCCCCAGTTTATTGAAAATGGCTTATGCTCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCA
*
22994778 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCA
*
22994829 AAAAGGGCTT-TGCCCTAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
22994862 AGGCCTCCAG
Statistics
Matches: 79, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
48 5 0.06
49 9 0.11
50 7 0.09
51 23 0.29
52 35 0.44
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCA
Found at i:22994823 original size:25 final size:26
Alignment explanation
Indices: 22994726--22994861 Score: 163
Period size: 26 Copynumber: 5.3 Consensus size: 26
22994716 GAGGAAGTGC
22994726 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * ***
22994752 AAAATGGCTTATGCTCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATTG
22994778 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
22994804 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
22994829 AAAAGGGCTT-TGCCCTAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
22994852 AAAAGAGGCT
1 AAAAG-GGCT
22994862 AGGCCTCCAG
Statistics
Matches: 94, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 30 0.32
26 52 0.55
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:22995053 original size:42 final size:42
Alignment explanation
Indices: 22994994--22995085 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
22994984 TAGTCTCCCC
** *
22994994 AAATGGGCTTGCATACATTC-ATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACA-TCGATTGACATTACATATGATATTG
*
22995036 AAATGGGCTTGCATACATCGATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCGATTGACATTACATATGATATTG
22995078 AAATGGGC
1 AAATGGGC
22995086 CTATGGGGCA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
41 2 0.04
42 43 0.96
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCGATTGACATTACATATGATATTG
Found at i:22995147 original size:31 final size:31
Alignment explanation
Indices: 22995109--22995210 Score: 177
Period size: 31 Copynumber: 3.3 Consensus size: 31
22995099 CGTTTACAGT
* * *
22995109 AAAGGCTTCAGCACAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
22995140 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
22995171 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
22995202 AAAGGCTTC
1 AAAGGCTTC
22995211 CGCCTAGTAA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 68 1.00
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:23016671 original size:25 final size:25
Alignment explanation
Indices: 23016615--23016688 Score: 76
Period size: 25 Copynumber: 2.9 Consensus size: 25
23016605 ATGAATTTTC
*
23016615 TCAAAATTTTACTGAGGGTAAAATCA
1 TCAAAATTTTACT-AGAGTAAAATCA
* * **
23016641 TTAAAATTTTACTAGAGTAAAGTTG
1 TCAAAATTTTACTAGAGTAAAATCA
* *
23016666 TCAAAATTTTATTGGAGTAAAAT
1 TCAAAATTTTACTAGAGTAAAAT
23016689 TGGGATTAGA
Statistics
Matches: 39, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
25 27 0.69
26 12 0.31
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.36
Consensus pattern (25 bp):
TCAAAATTTTACTAGAGTAAAATCA
Found at i:23019386 original size:27 final size:26
Alignment explanation
Indices: 23019352--23019456 Score: 99
Period size: 27 Copynumber: 4.1 Consensus size: 26
23019342 ATGATTTTGC
*
23019352 CCTTATAGGGTAAAATGACCGAAATA
1 CCTTATAGGGTAAAATGACTGAAATA
23019378 CCTTCATAGGGTAAAATGA---AAATA
1 CCTT-ATAGGGTAAAATGACTGAAATA
** * **
23019402 CCCCATTGGGTAGGATGACTGAAATA
1 CCTTATAGGGTAAAATGACTGAAATA
* *
23019428 CCCTTGTAGGGTAAAATGACTGTAATA
1 -CCTTATAGGGTAAAATGACTGAAATA
23019455 CC
1 CC
23019457 CCGGTAAGGT
Statistics
Matches: 62, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
23 11 0.18
24 7 0.11
26 11 0.18
27 33 0.53
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (26 bp):
CCTTATAGGGTAAAATGACTGAAATA
Found at i:23019457 original size:27 final size:27
Alignment explanation
Indices: 23019416--23019474 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
23019406 ATTGGGTAGG
** *
23019416 ATGACTGAAATACCCTTGTAGGGTAAA
1 ATGACTGAAATACCCCGGTAAGGTAAA
*
23019443 ATGACTGTAATACCCCGGTAAGGTAAA
1 ATGACTGAAATACCCCGGTAAGGTAAA
23019470 ATGAC
1 ATGAC
23019475 ATTTGTTCCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.24
Consensus pattern (27 bp):
ATGACTGAAATACCCCGGTAAGGTAAA
Found at i:23019838 original size:18 final size:18
Alignment explanation
Indices: 23019815--23019882 Score: 86
Period size: 18 Copynumber: 3.8 Consensus size: 18
23019805 TTTGCTTACA
*
23019815 TACTGCACTGATTACTGT
1 TACTGCATTGATTACTGT
*
23019833 TACTGCATTGATCA-TGGT
1 TACTGCATTGATTACT-GT
23019851 TA-TCGCATTGATTACTGT
1 TACT-GCATTGATTACTGT
23019869 TACTGCATTGATTA
1 TACTGCATTGATTA
23019883 ATATTACTGA
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
17 2 0.05
18 39 0.91
19 2 0.05
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.41
Consensus pattern (18 bp):
TACTGCATTGATTACTGT
Found at i:23019889 original size:18 final size:18
Alignment explanation
Indices: 23019815--23019891 Score: 77
Period size: 18 Copynumber: 4.3 Consensus size: 18
23019805 TTTGCTTACA
* *
23019815 TACTGCACTGATTACTGT
1 TACTGCATTGATTAATGT
*
23019833 TACTGCATTGA-TCATGGT
1 TACTGCATTGATTAAT-GT
*
23019851 TA-TCGCATTGATTACTGT
1 TACT-GCATTGATTAATGT
*
23019869 TACTGCATTGATTAATAT
1 TACTGCATTGATTAATGT
23019887 TACTG
1 TACTG
23019892 AAATGGGCTA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
17 3 0.06
18 42 0.88
19 3 0.06
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.42
Consensus pattern (18 bp):
TACTGCATTGATTAATGT
Found at i:23019929 original size:34 final size:34
Alignment explanation
Indices: 23019886--23019978 Score: 150
Period size: 34 Copynumber: 2.7 Consensus size: 34
23019876 TTGATTAATA
*
23019886 TTACTGAAATGGGCTAAAGCCCAGACCGCTACTG
1 TTACTGAAATGGGCTAAGGCCCAGACCGCTACTG
*
23019920 TTACTGAAATGGGCTAAGGCCCAGACTGCTACTG
1 TTACTGAAATGGGCTAAGGCCCAGACCGCTACTG
* *
23019954 TTACTGATATGGGCTTAGGCCCAGA
1 TTACTGAAATGGGCTAAGGCCCAGA
23019979 ATGTATGCGC
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 55 1.00
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.24
Consensus pattern (34 bp):
TTACTGAAATGGGCTAAGGCCCAGACCGCTACTG
Found at i:23022914 original size:15 final size:15
Alignment explanation
Indices: 23022894--23022923 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
23022884 CGAAGTATGT
23022894 TAGCTCTTTCTTAGG
1 TAGCTCTTTCTTAGG
23022909 TAGCTCTTTCTTAGG
1 TAGCTCTTTCTTAGG
23022924 CCTCATTCGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.20, G:0.20, T:0.47
Consensus pattern (15 bp):
TAGCTCTTTCTTAGG
Found at i:23035209 original size:29 final size:29
Alignment explanation
Indices: 23035145--23035210 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
23035135 ATTCCATTTA
* *
23035145 TTTCACAATTTAACCCCTTAATTTACACT
1 TTTCTCAATTTAACCCCTTAATATACACT
* * *
23035174 TTTCTCAATTTAATCCC-TAATATGCATT
1 TTTCTCAATTTAACCCCTTAATATACACT
23035202 TTTACTCAA
1 TTT-CTCAA
23035211 AATCACTTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 11 0.35
29 20 0.65
ACGTcount: A:0.30, C:0.24, G:0.02, T:0.44
Consensus pattern (29 bp):
TTTCTCAATTTAACCCCTTAATATACACT
Found at i:23047453 original size:23 final size:24
Alignment explanation
Indices: 23047391--23047456 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
23047381 TATTGATATA
* *
23047391 TCAGCTCGTAAGAGCTTACTGTTT
1 TCAGCTCATCAGAGCTTACTGTTT
* * *
23047415 TCATCTCGTCAAAGCTTACTG-TT
1 TCAGCTCATCAGAGCTTACTGTTT
23047438 TCAGCTCAAT-AGAGCTTAC
1 TCAGCTC-ATCAGAGCTTAC
23047457 AGTCCATCAG
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
23 16 0.46
24 19 0.54
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (24 bp):
TCAGCTCATCAGAGCTTACTGTTT
Found at i:23055141 original size:23 final size:23
Alignment explanation
Indices: 23055087--23055151 Score: 78
Period size: 24 Copynumber: 2.7 Consensus size: 23
23055077 TATTGATATA
*
23055087 TCAACTCATAAGAGCTTACTGTTT
1 TCAACTCAT-AGAGCTTACCGTTT
23055111 TCAACTCATCAGAGCTTACCG-TT
1 TCAACTCAT-AGAGCTTACCGTTT
*
23055134 TCATCTCAATAGAGCTTA
1 TCAACTC-ATAGAGCTTA
23055152 ATGTCCATCA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
23 16 0.43
24 21 0.57
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (23 bp):
TCAACTCATAGAGCTTACCGTTT
Found at i:23055384 original size:20 final size:20
Alignment explanation
Indices: 23055332--23055384 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 20
23055322 GTGTTATACA
* * *
23055332 GATGAATTACT-ATTATATG
1 GATGAATTACTGTTTAAACG
* *
23055351 GATGAAGTATTGTTTAAACG
1 GATGAATTACTGTTTAAACG
23055371 GATGAATTACTGTT
1 GATGAATTACTGTT
23055385 ATCGAATAAT
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
19 9 0.35
20 17 0.65
ACGTcount: A:0.34, C:0.06, G:0.21, T:0.40
Consensus pattern (20 bp):
GATGAATTACTGTTTAAACG
Found at i:23058657 original size:8 final size:8
Alignment explanation
Indices: 23058644--23058680 Score: 65
Period size: 8 Copynumber: 4.6 Consensus size: 8
23058634 GTTAAACGGC
23058644 AAAAGCCG
1 AAAAGCCG
23058652 AAAAGCCG
1 AAAAGCCG
*
23058660 AAAAGCAG
1 AAAAGCCG
23058668 AAAAGCCG
1 AAAAGCCG
23058676 AAAAG
1 AAAAG
23058681 TGGGCTGTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.57, C:0.19, G:0.24, T:0.00
Consensus pattern (8 bp):
AAAAGCCG
Found at i:23062634 original size:47 final size:47
Alignment explanation
Indices: 23062526--23063525 Score: 1802
Period size: 47 Copynumber: 21.1 Consensus size: 47
23062516 TGAAATGATA
*
23062526 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTG
*
23062575 ATAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
*
23062622 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGAGTATATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTG-AA-AGTGTATATATGTG
23062671 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTG
23062720 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
* *
23062767 ATAAGGCCTAATAGCCGATGTGATGAATGTGAGAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
23062814 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTG
23062863 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
23062910 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
*
23062957 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
23063004 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
23063051 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
23063098 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
23063145 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
23063192 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
23063239 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
23063286 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
23063333 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
*
23063380 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
23063427 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
* * * * * * *
23063474 ACAGGGCCTAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
23063521 ATAAG
1 ATAAG
23063526 TCCCGAAGGG
Statistics
Matches: 923, Mismatches: 22, Indels: 14
0.96 0.02 0.01
Matches are distributed among these distances:
47 747 0.81
48 3 0.00
49 173 0.19
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
Done.