Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56482370
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1659275 characters in sequence are not A, C, G, or T
File 78 of 172
Found at i:25794275 original size:15 final size:15
Alignment explanation
Indices: 25794241--25794284 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
25794231 CTTGCCTCTC
*
25794241 TTTTCTTTTTATTTCA
1 TTTTCTTTTT-CTTCA
*
25794257 TTTTCTTTTTCTTCT
1 TTTTCTTTTTCTTCA
25794272 TTTTCTTTTTCTT
1 TTTTCTTTTTCTT
25794285 TTTCTTTTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
15 16 0.62
16 10 0.38
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTTCTTTTTCTTCA
Found at i:25794301 original size:15 final size:14
Alignment explanation
Indices: 25794239--25794303 Score: 58
Period size: 15 Copynumber: 4.2 Consensus size: 14
25794229 CTCTTGCCTC
25794239 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-TT
*
25794254 TCATTTTCTTTTTCT
1 TC-TTTTCTTTTTTT
25794269 TCTTTTTCTTTTTCTTTT
1 TC-TTTTC--TTT-TTTT
*
25794287 TCTTTTCTTTGTTT
1 TCTTTTCTTTTTTT
25794301 TCT
1 TCT
25794304 CTTTACAAGA
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
14 6 0.14
15 13 0.31
16 10 0.24
17 8 0.19
18 5 0.12
ACGTcount: A:0.03, C:0.17, G:0.02, T:0.78
Consensus pattern (14 bp):
TCTTTTCTTTTTTT
Found at i:25794301 original size:21 final size:21
Alignment explanation
Indices: 25794241--25794307 Score: 73
Period size: 21 Copynumber: 3.1 Consensus size: 21
25794231 CTTGCCTCTC
* *
25794241 TTTTCTTTTTATTTCATTTTCT
1 TTTTCTTCTT-TTTCTTTTTCT
25794263 TTTTCTTCTTTTTCTTTTTCT
1 TTTTCTTCTTTTTCTTTTTCT
*
25794284 TTTTCTT-TTCTTTGTTTTCTCT
1 TTTTCTTCTT-TTTCTTTT-TCT
25794306 TT
1 TT
25794308 ACAAGAATGT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
20 2 0.05
21 24 0.60
22 14 0.35
ACGTcount: A:0.03, C:0.16, G:0.01, T:0.79
Consensus pattern (21 bp):
TTTTCTTCTTTTTCTTTTTCT
Found at i:25796999 original size:30 final size:30
Alignment explanation
Indices: 25796965--25797061 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
25796955 TAAACTAAAA
* *
25796965 TGAGCTAAGCTTTAGCTTGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
* * * * * *
25796995 TGAGCTGAGATTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
* *
25797025 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGATTTAGCTCGTGAGCT-AAAGT
25797055 TGAGCTA
1 TGAGCTA
25797062 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
30 47 0.94
31 3 0.06
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.30
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
Found at i:25798550 original size:14 final size:14
Alignment explanation
Indices: 25798533--25798572 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
25798523 CGAATGGAAT
*
25798533 GGTAGGAACGAAAG
1 GGTAGGAACAAAAG
25798547 GGTAGGAACAAAAG
1 GGTAGGAACAAAAG
* *
25798561 GATATGAACAAA
1 GGTAGGAACAAA
25798573 TTGGTCGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.50, C:0.07, G:0.33, T:0.10
Consensus pattern (14 bp):
GGTAGGAACAAAAG
Found at i:25805086 original size:11 final size:11
Alignment explanation
Indices: 25805070--25805119 Score: 66
Period size: 11 Copynumber: 4.6 Consensus size: 11
25805060 TAAATCACTT
*
25805070 TTTTTTTTGAA
1 TTTTTTTCGAA
*
25805081 TTTTTTTCAAA
1 TTTTTTTCGAA
*
25805092 TTTTTTTTGAA
1 TTTTTTTCGAA
25805103 TTTTTTTCG-A
1 TTTTTTTCGAA
25805113 TTTTTTT
1 TTTTTTT
25805120 AAAACTTGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
10 8 0.24
11 26 0.76
ACGTcount: A:0.16, C:0.04, G:0.06, T:0.74
Consensus pattern (11 bp):
TTTTTTTCGAA
Found at i:25805098 original size:22 final size:21
Alignment explanation
Indices: 25805070--25805119 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 21
25805060 TAAATCACTT
25805070 TTTTTTTTGAATTTTTTTCAAA
1 TTTTTTTTGAATTTTTTTC-AA
*
25805092 TTTTTTTTGAATTTTTTTCGA
1 TTTTTTTTGAATTTTTTTCAA
25805113 TTTTTTT
1 TTTTTTT
25805120 AAAACTTGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 8 0.30
22 19 0.70
ACGTcount: A:0.16, C:0.04, G:0.06, T:0.74
Consensus pattern (21 bp):
TTTTTTTTGAATTTTTTTCAA
Found at i:25807269 original size:27 final size:27
Alignment explanation
Indices: 25807016--25807268 Score: 326
Period size: 27 Copynumber: 9.4 Consensus size: 27
25807006 TGGATAAGTT
* *
25807016 GTAGAATTACTGAAATACCCATGTAAG
1 GTAGAATTACTGAAATACCCCTGTAGG
**
25807043 GTAGAATTACCAAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* *
25807070 GTAGAATTATTGAAATACCCCTGTAAG
1 GTAGAATTACTGAAATACCCCTGTAGG
* *
25807097 GTAGAATTACCGAAATACCCCTATAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
25807124 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
25807151 GTATAATTACTGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* * *
25807178 ATAGAATTACTGAAATACCCTTATAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* *
25807205 GTAGAAATACTGAAATACCCCTATAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* * * *
25807232 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
25807259 GTAAAATTAC
1 GTAGAATTAC
25807269 CATTTTGCCC
Statistics
Matches: 195, Mismatches: 31, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 195 1.00
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.26
Consensus pattern (27 bp):
GTAGAATTACTGAAATACCCCTGTAGG
Found at i:25808040 original size:26 final size:27
Alignment explanation
Indices: 25808011--25808070 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
25808001 CCACATAAAT
*
25808011 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
25808037 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
25808064 ATATCTG
1 ATATCTG
25808071 GCAGCTTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:25808040 original size:71 final size:67
Alignment explanation
Indices: 25807902--25808043 Score: 167
Period size: 67 Copynumber: 2.1 Consensus size: 67
25807892 GAGGAAGCGT
* * ** * *
25807902 TCTGGTAGCCTCGTTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGATTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACCTAGCCACAA
25807967 TA
66 TA
* * *
25807969 TCTGGCAGCGTCGCTGCAATCTGGTGGCTTCGCCACATAAATATATCTGTTCTGGTGGCCTAGCC
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCAC----ATATATCTGTTCTGGTGACCTAGCC
25808034 ACAATA
62 ACAATA
25808040 TCTG
1 TCTG
25808044 TATCTGGTGA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
67 32 0.52
71 30 0.48
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.32
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACCTAGCCACAA
TA
Found at i:25815880 original size:27 final size:26
Alignment explanation
Indices: 25815849--25816026 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
25815839 TAAATTGTAC
25815849 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
25815876 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
25815902 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
25815930 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
25815958 GGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
25815985 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
25816012 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
25816027 GACTCGATAT
Statistics
Matches: 131, Mismatches: 15, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.01
27 104 0.79
28 26 0.20
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:25815965 original size:82 final size:81
Alignment explanation
Indices: 25815850--25816005 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
25815840 AAATTGTACA
*
25815850 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
25815914 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
25815931 GCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
25815996 TGCGAGTTGA
65 TGCGAATTGA
25816006 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:25816017 original size:82 final size:81
Alignment explanation
Indices: 25815846--25816026 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
25815836 GATTAAATTG
*
25815846 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
25815911 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
25815927 TGCGGCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
25815991 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
25816009 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
25816027 GACTCGATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:25820944 original size:68 final size:67
Alignment explanation
Indices: 25820890--25821115 Score: 407
Period size: 68 Copynumber: 3.3 Consensus size: 67
25820880 ATACTATATA
25820890 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACG-GAGAGATA
25820955 AAT
65 AAT
25820958 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACG-GAGAGATA
25821023 AAT
65 AAT
25821026 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACG-GAGAGATA
25821091 AAT
65 AAT
* *
25821094 GTAGCTAGGTCGCATGAGTGAT
1 GTAGCTAGGTCACATGTGTGAT
25821116 TCCAAGTGAA
Statistics
Matches: 156, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 156 1.00
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.24
Consensus pattern (67 bp):
GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGGAGAGATAA
AT
Found at i:25820998 original size:38 final size:38
Alignment explanation
Indices: 25820956--25821067 Score: 91
Period size: 38 Copynumber: 3.2 Consensus size: 38
25820946 TGAGAGATAA
25820956 ATGTAGCTAGGTCACATGTGTGATACGGGATGTATCCC
1 ATGTAGCTAGGTCACATGTGTGATACGGGATGTATCCC
* * * **
25820994 ATGTAG--A---CA-A-GAGAGCTACGTGAGA-G-AT-AA
1 ATGTAGCTAGGTCACATGTGTGATACG-G-GATGTATCCC
25821024 ATGTAGCTAGGTCACATGTGTGATACGGGATGTATCCC
1 ATGTAGCTAGGTCACATGTGTGATACGGGATGTATCCC
25821062 ATGTAG
1 ATGTAG
25821068 ACAAGAGAGC
Statistics
Matches: 52, Mismatches: 10, Indels: 24
0.60 0.12 0.28
Matches are distributed among these distances:
30 6 0.12
31 9 0.17
32 4 0.08
33 4 0.08
35 4 0.08
36 4 0.08
37 9 0.17
38 12 0.23
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (38 bp):
ATGTAGCTAGGTCACATGTGTGATACGGGATGTATCCC
Found at i:25821189 original size:66 final size:67
Alignment explanation
Indices: 25820924--25821189 Score: 183
Period size: 68 Copynumber: 3.9 Consensus size: 67
25820914 GGGATGTATC
* * * *
25820924 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGTGTGATA-C--GGGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGACAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
* *
25820986 TGTATC-
62 AGGA-CA
* * * *
25820992 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGTGTGATA-C--GGGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGACAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
* *
25821054 TGTATC-
62 AGGA-CA
* *
25821060 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGACAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
25821125 AGGACA
62 AGGACA
* *
25821131 CCATGTAGACAAGAGAGCTAC-GAGACAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGACAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
25821190 TTCACCATGT
Statistics
Matches: 183, Mismatches: 10, Indels: 12
0.89 0.05 0.06
Matches are distributed among these distances:
66 24 0.13
67 8 0.04
68 123 0.67
69 1 0.01
70 1 0.01
71 26 0.14
ACGTcount: A:0.33, C:0.16, G:0.30, T:0.21
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGACAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:25821366 original size:52 final size:52
Alignment explanation
Indices: 25821288--25821391 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
25821278 ATTGTTCAAC
*
25821288 GGGATGGTTTTGTGGTGACATTGTAGTCATAGACCTACACTTTTGATGTATG
1 GGGATGGTTTTGTGGTGACATTGTAGTCATAGACCTACACTTGTGATGTATG
25821340 GGGATGGTTTTGTGGTGACATTGTAGTCATAGACCTACACTTGTGATGTATG
1 GGGATGGTTTTGTGGTGACATTGTAGTCATAGACCTACACTTGTGATGTATG
25821392 AAATGTGATG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.21, C:0.12, G:0.30, T:0.38
Consensus pattern (52 bp):
GGGATGGTTTTGTGGTGACATTGTAGTCATAGACCTACACTTGTGATGTATG
Found at i:25824463 original size:23 final size:22
Alignment explanation
Indices: 25824425--25824500 Score: 63
Period size: 23 Copynumber: 3.5 Consensus size: 22
25824415 TATAAAACCT
25824425 AATAAAAATAAGCTTAAAGA-AA
1 AATAAAAATAAGCTTAAA-ATAA
25824447 AATAAAAAGT-AGTCTTAAAATAA
1 AATAAAAA-TAAG-CTTAAAATAA
* *
25824470 AATAAAAGTAA-C--AACATAA
1 AATAAAAATAAGCTTAAAATAA
25824489 AATAATAAATAA
1 AATAA-AAATAA
25824501 AAGTTTTTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
19 11 0.24
20 5 0.11
21 1 0.02
22 12 0.26
23 17 0.37
ACGTcount: A:0.67, C:0.05, G:0.07, T:0.21
Consensus pattern (22 bp):
AATAAAAATAAGCTTAAAATAA
Found at i:25824479 original size:22 final size:23
Alignment explanation
Indices: 25824425--25824476 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
25824415 TATAAAACCT
25824425 AATAAAAA-TAAG-CTTAAAGAAA
1 AATAAAAAGT-AGTCTTAAAGAAA
25824447 AATAAAAAGTAGTCTTAAA-ATAA
1 AATAAAAAGTAGTCTTAAAGA-AA
25824470 AATAAAA
1 AATAAAA
25824477 GTAACAACAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 11 0.41
23 16 0.59
ACGTcount: A:0.67, C:0.04, G:0.08, T:0.21
Consensus pattern (23 bp):
AATAAAAAGTAGTCTTAAAGAAA
Found at i:25829413 original size:19 final size:19
Alignment explanation
Indices: 25829376--25829413 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
25829366 ACCTGTCAGA
*
25829376 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
25829395 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
25829414 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:25830160 original size:15 final size:15
Alignment explanation
Indices: 25830137--25830167 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
25830127 GAATATCAAA
25830137 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
*
25830152 ACAATAATTAAGAAC
1 ACAAGAATTAAGAAC
25830167 A
1 A
25830168 AGTCAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.61, C:0.13, G:0.10, T:0.16
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:25833073 original size:21 final size:22
Alignment explanation
Indices: 25833035--25833086 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
25833025 ATCATGTGAG
25833035 AAAGAAAAAGATAGTGAA-AGA
1 AAAGAAAAAGATAGTGAATAGA
*
25833056 AAAGAAAAAGA-ACTTGAATTAGA
1 AAAGAAAAAGATA-GTGAA-TAGA
25833079 AAAGAAAA
1 AAAGAAAA
25833087 TTGAGAATGA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 1 0.04
21 15 0.56
23 11 0.41
ACGTcount: A:0.67, C:0.02, G:0.19, T:0.12
Consensus pattern (22 bp):
AAAGAAAAAGATAGTGAATAGA
Found at i:25834081 original size:67 final size:67
Alignment explanation
Indices: 25834002--25834135 Score: 259
Period size: 67 Copynumber: 2.0 Consensus size: 67
25833992 ATGCAAAATC
*
25834002 AAATCTTTGATCCTAGAAATTGCACTATAGTGGGATTTGAAGGATTCGAGTATGTCTTGCATGAG
1 AAATCTTTGATCCTAGAAATTGCACTATAGTGGGATTTGAAGGATTCGAGCATGTCTTGCATGAG
25834067 TT
66 TT
25834069 AAATCTTTGATCCTAGAAATTGCACTATAGTGGGATTTGAAGGATTCGAGCATGTCTTGCATGAG
1 AAATCTTTGATCCTAGAAATTGCACTATAGTGGGATTTGAAGGATTCGAGCATGTCTTGCATGAG
25834134 TT
66 TT
25834136 TAACTTGCAA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (67 bp):
AAATCTTTGATCCTAGAAATTGCACTATAGTGGGATTTGAAGGATTCGAGCATGTCTTGCATGAG
TT
Found at i:25835067 original size:26 final size:25
Alignment explanation
Indices: 25835023--25835075 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 25
25835013 TTAATATGTG
* *
25835023 TTTAATGTGTCTAGCTTAGGACATAA
1 TTTAATGTGTCTAACTTAGAACA-AA
*
25835049 TTTAATGTGTCTAATTTAGAACAAA
1 TTTAATGTGTCTAACTTAGAACAAA
25835074 TT
1 TT
25835076 AATTAGTTGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.42
Consensus pattern (25 bp):
TTTAATGTGTCTAACTTAGAACAAA
Found at i:25835861 original size:10 final size:11
Alignment explanation
Indices: 25835818--25835866 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
25835808 TTTTCATGCT
25835818 AGGAAACTTCA
1 AGGAAACTTCA
*
25835829 AGGAATCTTGCA
1 AGGAAACTT-CA
*
25835841 AGGACAC-TCA
1 AGGAAACTTCA
25835851 A-GAAACTTCA
1 AGGAAACTTCA
25835861 AGGAAA
1 AGGAAA
25835867 TTTCCAGCCT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
9 4 0.13
10 7 0.23
11 13 0.42
12 7 0.23
ACGTcount: A:0.45, C:0.18, G:0.20, T:0.16
Consensus pattern (11 bp):
AGGAAACTTCA
Found at i:25838138 original size:96 final size:96
Alignment explanation
Indices: 25837949--25838151 Score: 266
Period size: 96 Copynumber: 2.1 Consensus size: 96
25837939 AATACAGCGA
* * * * *
25837949 AGAGTTAGTCCAAGGTTTCAAAATCTACCAAACTGTGGTAACTCGAACATTGAGAAGATATGGAA
1 AGAGCTAGCCCAAGGTTTCAAAATCTACCAAACTGTGGGAACTCAAACATTGAGAAGATAAGGAA
*
25838014 TGCAACTAAATCAAGAAAAACATTAAATACT
66 TGCAACTAAATCAAGAAAAACATCAAATACT
* *
25838045 AGAGGTAGCCCAAGGTTTCAAAATCTACTAAAC-GTTGGGAACTCAAACATTGAGAAGATAAGGA
1 AGAGCTAGCCCAAGGTTTCAAAATCTACCAAACTG-TGGGAACTCAAACATTGAGAAGATAAGGA
* * * *
25838109 ATGCGACTGACTCAGGAAAGAA-ATCAAATACT
65 ATGCAACTAAATCAAGAAA-AACATCAAATACT
25838141 AGAGCTAGCCC
1 AGAGCTAGCCC
25838152 TAACTCAAAT
Statistics
Matches: 93, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
95 1 0.01
96 90 0.97
97 2 0.02
ACGTcount: A:0.42, C:0.17, G:0.20, T:0.21
Consensus pattern (96 bp):
AGAGCTAGCCCAAGGTTTCAAAATCTACCAAACTGTGGGAACTCAAACATTGAGAAGATAAGGAA
TGCAACTAAATCAAGAAAAACATCAAATACT
Found at i:25838171 original size:69 final size:69
Alignment explanation
Indices: 25838084--25838220 Score: 195
Period size: 69 Copynumber: 2.0 Consensus size: 69
25838074 AAACGTTGGG
**
25838084 AACTCAAACATTGAGAAGATAAGGAATGCGACTGACTCAGG-AAAGAAATCAAATACTAGAGCTA
1 AACTCAAACATTGAGAAGATAAGGAATGAAACTGACTC-GGCAAAGAAATCAAATACTAGAGCTA
25838148 GCCCT
65 GCCCT
* * * * *
25838153 AACTCAAATATTGTGAAGATACGGAATGAAACTGACTCGGCAAAGATATCAAATACTAGAGTTAG
1 AACTCAAACATTGAGAAGATAAGGAATGAAACTGACTCGGCAAAGAAATCAAATACTAGAGCTAG
25838218 CCC
66 CCC
25838221 GAGGTTCCAA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
68 2 0.03
69 58 0.97
ACGTcount: A:0.42, C:0.18, G:0.20, T:0.20
Consensus pattern (69 bp):
AACTCAAACATTGAGAAGATAAGGAATGAAACTGACTCGGCAAAGAAATCAAATACTAGAGCTAG
CCCT
Found at i:25838298 original size:81 final size:82
Alignment explanation
Indices: 25838158--25838319 Score: 229
Period size: 81 Copynumber: 2.0 Consensus size: 82
25838148 GCCCTAACTC
* * * *
25838158 AAATATTGTGAAGATACGGAATGAAACTGACTCGGCAAAGATATCAAATACTAGAGTTAGCCCGA
1 AAATATTGTGAAGATACGGAATGAAACTGACACAGCAAAGAAATCAAATACTAGAGTTAGCCCAA
25838223 GGTTCCAAAATCTACCA
66 GGTTCCAAAATCTACCA
* * *
25838240 AAAT-TTGTGAAGATGCGGGATGCAACTGACACAAG-AAAGAAATCAAATACTAGAGTTAGCCCA
1 AAATATTGTGAAGATACGGAATGAAACTGACAC-AGCAAAGAAATCAAATACTAGAGTTAGCCCA
*
25838303 AGGTTTCAAAATCTACC
65 AGGTTCCAAAATCTACC
25838320 TAATGGTGGT
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
81 66 0.93
82 5 0.07
ACGTcount: A:0.41, C:0.18, G:0.20, T:0.22
Consensus pattern (82 bp):
AAATATTGTGAAGATACGGAATGAAACTGACACAGCAAAGAAATCAAATACTAGAGTTAGCCCAA
GGTTCCAAAATCTACCA
Found at i:25838482 original size:81 final size:81
Alignment explanation
Indices: 25838341--25838673 Score: 244
Period size: 81 Copynumber: 3.9 Consensus size: 81
25838331 ACTCCAACAA
*
25838341 TGAGAAGAAAAGGGATGCAACTCTCTCAACAAAGACATCAAATACTAGAGCTAGCCCAAGGTTCC
1 TGAGAAGAAAAGGGATGCAACTCACTCAACAAAGACATCAAATACTAGAGCTAGCCCAAGGTTCC
25838406 AAAATCTACCAAATAT
66 AAAATCTACCAAATAT
* * * * **
25838422 TGAGAAGATATGGGATGCAAC-CGACTCAAGAACA-ACATCAAATACTAGAGTTAGTTCAAGGTT
1 TGAGAAGAAAAGGGATGCAACTC-ACTCAACAA-AGACATCAAATACTAGAGCTAGCCCAAGGTT
* * **
25838485 TCAAAATCTACCTAATGG
64 CCAAAATCTACCAAATAT
* * * * *
25838503 TG-GTAACTCCAACAATGAGAAGAAAAGGGATGCAACTCCCTCAACAAAGACATCAAATACTAGA
1 TGAG-AA---GAA-AA-GGGATG-CAA---CT-C-A----CTCAACAAAGACATCAAATACTAGA
*
25838567 GTTAGCCCAAGGTTCCAAAATCTACCAAA-ATT
50 GCTAGCCCAAGGTTCCAAAATCTACCAAATA-T
* * * * * *
25838599 TGAGAAGATATGGGGTGCAAC-CGACCCAAGAAAGACATCAAATACTAGAGTTAGCCCAAGGTTC
1 TGAGAAGAAAAGGGATGCAACTC-ACTCAACAAAGACATCAAATACTAGAGCTAGCCCAAGGTTC
25838663 CAAAATCTACC
65 CAAAATCTACC
25838674 TAATGGTGAT
Statistics
Matches: 194, Mismatches: 37, Indels: 42
0.71 0.14 0.15
Matches are distributed among these distances:
80 2 0.01
81 119 0.61
82 1 0.01
84 1 0.01
85 3 0.02
86 4 0.02
87 2 0.01
90 2 0.01
91 3 0.02
92 3 0.02
93 1 0.01
95 1 0.01
96 51 0.26
97 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.20
Consensus pattern (81 bp):
TGAGAAGAAAAGGGATGCAACTCACTCAACAAAGACATCAAATACTAGAGCTAGCCCAAGGTTCC
AAAATCTACCAAATAT
Found at i:25838496 original size:177 final size:177
Alignment explanation
Indices: 25838193--25838894 Score: 933
Period size: 177 Copynumber: 3.9 Consensus size: 177
25838183 ACTGACTCGG
* * * **
25838193 CAAAGATATCAAATACTAGAGTTAGCCCGAGGTTCCAAAATCTACCAAAATTTGTGAAGATGCGG
1 CAAAGACATCAAATACTAGAGTTAGCCCAAGGTTCCAAAATCTACCAAAATTTGAGAAGATATGG
* *
25838258 GATGCAACTGACACAAGAAAGAAATCAAATACTAGAGTTAGCCCAAGGTTTCAAAATCTACCTAA
66 GATGCAACCGACACAAGAAAGACATCAAATACTAGAGTTAGCCCAAGGTTTCAAAATCTACCTAA
25838323 TGGTGGTAACTCCAACAATGAGAAGAAAAGGGATGCAACTCTCTCAA
131 TGGTGGTAACTCCAACAATGAGAAGAAAAGGGATGCAACTCTCTCAA
*
25838370 CAAAGACATCAAATACTAGAGCTAGCCCAAGGTTCCAAAATCTACC-AAATATTGAGAAGATATG
1 CAAAGACATCAAATACTAGAGTTAGCCCAAGGTTCCAAAATCTACCAAAAT-TTGAGAAGATATG
* **
25838434 GGATGCAACCGACTCAAGAACA-ACATCAAATACTAGAGTTAGTTCAAGGTTTCAAAATCTACCT
65 GGATGCAACCGACACAAGAA-AGACATCAAATACTAGAGTTAGCCCAAGGTTTCAAAATCTACCT
*
25838498 AATGGTGGTAACTCCAACAATGAGAAGAAAAGGGATGCAACTCCCTCAA
129 AATGGTGGTAACTCCAACAATGAGAAGAAAAGGGATGCAACTCTCTCAA
25838547 CAAAGACATCAAATACTAGAGTTAGCCCAAGGTTCCAAAATCTACCAAAATTTGAGAAGATATGG
1 CAAAGACATCAAATACTAGAGTTAGCCCAAGGTTCCAAAATCTACCAAAATTTGAGAAGATATGG
* * *
25838612 GGTGCAACCGACCCAAGAAAGACATCAAATACTAGAGTTAGCCCAAGGTTCCAAAATCTACCTAA
66 GATGCAACCGACACAAGAAAGACATCAAATACTAGAGTTAGCCCAAGGTTTCAAAATCTACCTAA
* * *
25838677 TGGTGATAACTCCAACACTGAGAA-ATTAAGGGATGCAACTCTCTCAA
131 TGGTGGTAACTCCAACAATGAGAAGA-AAAGGGATGCAACTCTCTCAA
* * *
25838724 TAAAGACATCTAATACTAGAGTTAGCCCAAGGTTCCAAAATGTACCAAATGTTGATAACTCAAAC
1 CAAAGACATCAAATACTAGAGTTAGCCCAAGGTTCCAAAATCTACC--A-----A-AA-T-----
* * * * * *
25838789 ATTGAGAAGACATGGGATCCAACTGACTCAAGAAAGACGTTAAATACTAGAGTTAGCCCAAGGTT
52 -TTGAGAAGATATGGGATGCAACCGACACAAGAAAGACATCAAATACTAGAGTTAGCCCAAGGTT
* * * * *
25838854 TCAAACTCTACCAAATGGTGATAACTCAAACATTGAGAAGA
116 TCAAAATCTACCTAATGGTGGTAACTCCAACAATGAGAAGA
25838895 TACAGAATGT
Statistics
Matches: 467, Mismatches: 37, Indels: 26
0.88 0.07 0.05
Matches are distributed among these distances:
176 6 0.01
177 359 0.77
178 5 0.01
179 1 0.00
184 1 0.00
185 2 0.00
186 1 0.00
192 91 0.19
193 1 0.00
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (177 bp):
CAAAGACATCAAATACTAGAGTTAGCCCAAGGTTCCAAAATCTACCAAAATTTGAGAAGATATGG
GATGCAACCGACACAAGAAAGACATCAAATACTAGAGTTAGCCCAAGGTTTCAAAATCTACCTAA
TGGTGGTAACTCCAACAATGAGAAGAAAAGGGATGCAACTCTCTCAA
Found at i:25838763 original size:96 final size:96
Alignment explanation
Indices: 25838625--25838894 Score: 373
Period size: 96 Copynumber: 2.8 Consensus size: 96
25838615 GCAACCGACC
* * *
25838625 CAAGAAAGACATCAAATACTAGAGTTAGCCCAAGGTTCCAAAATCTACCTAATGGTGATAACTCC
1 CAAGAAAGACATCTAATACTAGAGTTAGCCCAAGGTTCCAAAATCTACCAAATGGTGATAACTCA
* * * *
25838690 AACACTGAGAA-ATTAAGGGATGCAACTCTCT
66 AACATTGAGAAGA-CAAGGGATCCAACTCACT
* * *
25838721 CAATAAAGACATCTAATACTAGAGTTAGCCCAAGGTTCCAAAATGTACCAAATGTTGATAACTCA
1 CAAGAAAGACATCTAATACTAGAGTTAGCCCAAGGTTCCAAAATCTACCAAATGGTGATAACTCA
* *
25838786 AACATTGAGAAGACATGGGATCCAACTGACT
66 AACATTGAGAAGACAAGGGATCCAACTCACT
* * *
25838817 CAAGAAAGACGT-TAAATACTAGAGTTAGCCCAAGGTTTCAAACTCTACCAAATGGTGATAACTC
1 CAAGAAAGACATCT-AATACTAGAGTTAGCCCAAGGTTCCAAAATCTACCAAATGGTGATAACTC
25838881 AAACATTGAGAAGA
65 AAACATTGAGAAGA
25838895 TACAGAATGT
Statistics
Matches: 154, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
95 1 0.01
96 152 0.99
97 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (96 bp):
CAAGAAAGACATCTAATACTAGAGTTAGCCCAAGGTTCCAAAATCTACCAAATGGTGATAACTCA
AACATTGAGAAGACAAGGGATCCAACTCACT
Found at i:25838916 original size:96 final size:95
Alignment explanation
Indices: 25838625--25838943 Score: 367
Period size: 96 Copynumber: 3.3 Consensus size: 95
25838615 GCAACCGACC
* *
25838625 CAAGAAAGACATCAAATACTAGAGTTAGCCCAAGGTTCCAAAATCTACCTAATGGTGATAACTCC
1 CAAGAAAGACATCAAATACTAGAGTTAGCCCAAGGTTCCAAAATCTACCAAATGGTGATAACTCA
* *
25838690 AACACTGAGAA-ATTAAGGGATGCAACTC--TCT
66 AACATTGAGAAGA-TAA-GGATG-AACCCGAT-T
* * * *
25838721 CAATAAAGACATCTAATACTAGAGTTAGCCCAAGGTTCCAAAATGTACCAAATGTTGATAACTCA
1 CAAGAAAGACATCAAATACTAGAGTTAGCCCAAGGTTCCAAAATCTACCAAATGGTGATAACTCA
* * * * *
25838786 AACATTGAGAAGACATGGGATCCAA-CTGACT
66 AACATTGAGAAGATA-AGGAT-GAACCCGATT
* * * *
25838817 CAAGAAAGACGTTAAATACTAGAGTTAGCCCAAGGTTTCAAACTCTACCAAATGGTGATAACTCA
1 CAAGAAAGACATCAAATACTAGAGTTAGCCCAAGGTTCCAAAATCTACCAAATGGTGATAACTCA
* *
25838882 AACATTGAGAAGATACAGAATGTACCCGATT
66 AACATTGAGAAGATA-AGGATGAACCCGATT
*
25838913 CAAGAAAGACACCAAATACTAGAGTTAGCCC
1 CAAGAAAGACATCAAATACTAGAGTTAGCCC
25838944 CAGACTCCAA
Statistics
Matches: 185, Mismatches: 32, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
95 1 0.01
96 183 0.99
97 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.17, T:0.22
Consensus pattern (95 bp):
CAAGAAAGACATCAAATACTAGAGTTAGCCCAAGGTTCCAAAATCTACCAAATGGTGATAACTCA
AACATTGAGAAGATAAGGATGAACCCGATT
Found at i:25838933 original size:192 final size:192
Alignment explanation
Indices: 25838598--25838943 Score: 466
Period size: 192 Copynumber: 1.8 Consensus size: 192
25838588 CTACCAAAAT
* * *
25838598 TTGAGAAGATATGGGGTGCAACCGACCCAAGAAAGACATCAAATACTAGAGTTAGCCCAAGGTTC
1 TTGAGAAGACATGGGATCCAACCGACCCAAGAAAGACATCAAATACTAGAGTTAGCCCAAGGTTC
* * * * *
25838663 CAAAATCTACCTAATGGTGATAACTCCAACACTGAGAAATTAAGGGATGCAACTCTCTCAATAAA
66 CAAAATCTACCAAATGGTGATAACTCAAACACTGAGAAATTAAGGAATGCAACCCTCTCAAGAAA
* *
25838728 GACATCTAATACTAGAGTTAGCCCAAGGTTCCAAAATGTACCAAATGTTGATAACTCAAACA
131 GACACCAAATACTAGAGTTAGCCCAAGGTTCCAAAATGTACCAAATGTTGATAACTCAAACA
* * * * *
25838790 TTGAGAAGACATGGGATCCAACTGACTCAAGAAAGACGTTAAATACTAGAGTTAGCCCAAGGTTT
1 TTGAGAAGACATGGGATCCAACCGACCCAAGAAAGACATCAAATACTAGAGTTAGCCCAAGGTTC
* * *
25838855 CAAACTCTACCAAATGGTGATAACTCAAACATTGAGAAGA-TACA-GAATG-TACCCGAT-TCAA
66 CAAAATCTACCAAATGGTGATAACTCAAACACTGAGAA-ATTA-AGGAATGCAACCC--TCTCAA
25838916 GAAAGACACCAAATACTAGAGTTAGCCC
127 GAAAGACACCAAATACTAGAGTTAGCCC
25838944 CAGACTCCAA
Statistics
Matches: 132, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
191 3 0.02
192 126 0.95
193 3 0.02
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.21
Consensus pattern (192 bp):
TTGAGAAGACATGGGATCCAACCGACCCAAGAAAGACATCAAATACTAGAGTTAGCCCAAGGTTC
CAAAATCTACCAAATGGTGATAACTCAAACACTGAGAAATTAAGGAATGCAACCCTCTCAAGAAA
GACACCAAATACTAGAGTTAGCCCAAGGTTCCAAAATGTACCAAATGTTGATAACTCAAACA
Found at i:25843484 original size:15 final size:15
Alignment explanation
Indices: 25843464--25843497 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
25843454 TGATGATAGT
25843464 TACAGCAAAAAAGTA
1 TACAGCAAAAAAGTA
25843479 TACAGCAAAAAAGTA
1 TACAGCAAAAAAGTA
25843494 TACA
1 TACA
25843498 TATATGATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.59, C:0.15, G:0.12, T:0.15
Consensus pattern (15 bp):
TACAGCAAAAAAGTA
Found at i:25853415 original size:17 final size:17
Alignment explanation
Indices: 25853393--25853429 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
25853383 CCTTTCTCCA
25853393 TTTTCTTTCTTCTTCTT
1 TTTTCTTTCTTCTTCTT
*
25853410 TTTTCTTTCTTTTTCTT
1 TTTTCTTTCTTCTTCTT
25853427 TTT
1 TTT
25853430 GTTTCATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTTCTTTCTTCTTCTT
Found at i:25853439 original size:16 final size:16
Alignment explanation
Indices: 25853393--25853449 Score: 53
Period size: 16 Copynumber: 3.5 Consensus size: 16
25853383 CCTTTCTCCA
25853393 TTTTCTTTC-TTCTTCTT
1 TTTTCTTTCATT-TTC-T
*
25853410 TTTTCTTTCTTTTTCT
1 TTTTCTTTCATTTTCT
* **
25853426 TTTTGTTTCATTTTGG
1 TTTTCTTTCATTTTCT
25853442 TTTTCTTT
1 TTTTCTTT
25853450 TTCTTTCATT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
16 20 0.59
17 12 0.35
18 2 0.06
ACGTcount: A:0.02, C:0.16, G:0.05, T:0.77
Consensus pattern (16 bp):
TTTTCTTTCATTTTCT
Found at i:25855785 original size:107 final size:107
Alignment explanation
Indices: 25855599--25855811 Score: 408
Period size: 107 Copynumber: 2.0 Consensus size: 107
25855589 TTTGGTAGAA
25855599 AGTCAACCAATCAAGAGAGAACCAGTAAAAGAGATAACCGAAAAAAGTTCCAAAGAACCAATATT
1 AGTCAACCAATCAAGAGAGAACCAGTAAAAGAGATAACCGAAAAAAGTTCCAAAGAACCAATATT
25855664 CACACCTTATGAGATTCCAAAAGCTTTCCAAAAATCCCAAAC
66 CACACCTTATGAGATTCCAAAAGCTTTCCAAAAATCCCAAAC
* *
25855706 AGTCAACCAATCAAGAGCGAACCAGTAAAAGAGATAACTGAAAAAAGTTCCAAAGAACCAATATT
1 AGTCAACCAATCAAGAGAGAACCAGTAAAAGAGATAACCGAAAAAAGTTCCAAAGAACCAATATT
25855771 CACACCTTATGAGATTCCAAAAGCTTTCCAAAAATCCCAAA
66 CACACCTTATGAGATTCCAAAAGCTTTCCAAAAATCCCAAA
25855812 ATGATTTCCT
Statistics
Matches: 104, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
107 104 1.00
ACGTcount: A:0.47, C:0.23, G:0.12, T:0.17
Consensus pattern (107 bp):
AGTCAACCAATCAAGAGAGAACCAGTAAAAGAGATAACCGAAAAAAGTTCCAAAGAACCAATATT
CACACCTTATGAGATTCCAAAAGCTTTCCAAAAATCCCAAAC
Found at i:25858200 original size:21 final size:22
Alignment explanation
Indices: 25858176--25858220 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
25858166 AGAAAAAGAG
25858176 AAATACAAAAAAG-AATAG-ATC
1 AAAT-CAAAAAAGAAATAGAATC
*
25858197 AAATCAAAAAGGAAATAGAATC
1 AAATCAAAAAAGAAATAGAATC
25858219 AA
1 AA
25858221 CAATTTGCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 7 0.33
21 9 0.43
22 5 0.24
ACGTcount: A:0.67, C:0.09, G:0.11, T:0.13
Consensus pattern (22 bp):
AAATCAAAAAAGAAATAGAATC
Found at i:25860738 original size:40 final size:40
Alignment explanation
Indices: 25860682--25860813 Score: 178
Period size: 40 Copynumber: 3.3 Consensus size: 40
25860672 CATTTGAATG
* *
25860682 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGA-T
* *
25860722 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGAT
* * *
25860762 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGAT
25860802 ATATCC-GGCTAA
1 ATATCCGGGCTAA
25860814 ATTCCGAAGA
Statistics
Matches: 82, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
39 6 0.07
40 73 0.89
41 3 0.04
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGAT
Found at i:25863807 original size:21 final size:23
Alignment explanation
Indices: 25863762--25863811 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
25863752 CTACTTTTCA
*
25863762 AAATAAATATTATTTATTAATTT
1 AAATAAATATAATTTATTAATTT
*
25863785 AAATAAAT-TAATTTTTTAA-TT
1 AAATAAATATAATTTATTAATTT
25863806 AAATAA
1 AAATAA
25863812 TTTTTAAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 8 0.32
22 9 0.36
23 8 0.32
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (23 bp):
AAATAAATATAATTTATTAATTT
Found at i:25863814 original size:16 final size:17
Alignment explanation
Indices: 25863782--25863816 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
25863772 TATTTATTAA
25863782 TTTAAATAAATTAATTT
1 TTTAAATAAATTAATTT
*
25863799 TTTAATTAAA-TAATTT
1 TTTAAATAAATTAATTT
25863815 TT
1 TT
25863817 AAACTGAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTAAATAAATTAATTT
Found at i:25874355 original size:102 final size:101
Alignment explanation
Indices: 25874169--25874357 Score: 290
Period size: 102 Copynumber: 1.8 Consensus size: 101
25874159 AAAACAGATT
* *
25874169 TTGAAAATACCTCGGTATGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGC
1 TTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGC
25874234 AAAGCATAAATTGAAAAAAAATAAAAATAAAAATCAA
66 AAAGCATAAATTG-AAAAAAATAAAAATAAAAATCAA
* * *
25874271 TTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 TTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT
25874336 GACAAA-CATAAATTGAAAAAAA
64 G-CAAAGCATAAATTGAAAAAAA
25874358 AATTGAAAAT
Statistics
Matches: 79, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
102 53 0.67
103 7 0.09
104 15 0.19
105 4 0.05
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (101 bp):
TTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGC
AAAGCATAAATTGAAAAAAATAAAAATAAAAATCAA
Found at i:25874412 original size:87 final size:90
Alignment explanation
Indices: 25874269--25874600 Score: 324
Period size: 87 Copynumber: 3.7 Consensus size: 90
25874259 AATAAAAATC
* *
25874269 AATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AATTGAAAATACCTCAGCGTGT-ATCTGAGGCTCAAATCACCTCTCGCAATATGAGTTGATTTTT
* *
25874334 TTGACAAACATAAA-TTGAAAAA-A-A
65 TGGAAAAACA-AAATTTGAAAAACAGA
* * * *
25874358 AATTGAAAATATCTCAACGTGT-TCTGAGTCTGAAATCACCTCTCGCAATATGAGTTGATTTTTT
1 AATTGAAAATACCTCAGCGTGTATCTGAGGCTCAAATCACCTCTCGCAATATGAGTTGATTTTTT
25874422 GGAAAAACAAAATTTGAAAAACAGA
66 GGAAAAACAAAATTTGAAAAACAGA
* * * * * *
25874447 ATTTGAAAATACCTCAGCGTGTGAGTC-AAGGCTCAACTCACCACTCGCAATGTGAGCTGATTTT
1 AATTGAAAATACCTCAGCGTGT-A-TCTGAGGCTCAAATCACCTCTCGCAATATGAGTTGA-TTT
* * *
25874511 TTTTGAAACACAGAAA-TTGAAGAACAGA
63 TTTGGAAAAACA-AAATTTGAAAAACAGA
* * * * * *
25874539 AATGGAAAACACCTCAGC----ATCTTAAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTT
1 AATTGAAAATACCTCAGCGTGTATC-TGAGGCTCAAATCACCTCTCGCAATATGAGTTGATTTTT
25874600 T
65 T
25874601 TTAAAGACAG
Statistics
Matches: 206, Mismatches: 27, Indels: 22
0.81 0.11 0.09
Matches are distributed among these distances:
86 5 0.02
87 61 0.30
88 31 0.15
89 39 0.19
91 26 0.13
92 41 0.20
93 3 0.01
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (90 bp):
AATTGAAAATACCTCAGCGTGTATCTGAGGCTCAAATCACCTCTCGCAATATGAGTTGATTTTTT
GGAAAAACAAAATTTGAAAAACAGA
Found at i:25874455 original size:13 final size:14
Alignment explanation
Indices: 25874423--25874455 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
25874413 TGATTTTTTG
25874423 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
25874437 GAAAAACAGAATTT
1 GAAAAACAAAATTT
25874451 GAAAA
1 GAAAA
25874456 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:25874662 original size:75 final size:74
Alignment explanation
Indices: 25874527--25875357 Score: 1017
Period size: 75 Copynumber: 11.3 Consensus size: 74
25874517 AACACAGAAA
* * ** * *
25874527 TTGAAGAACAGAAATGGAAAACACCTC-A-GCATCTTAAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAA-AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
25874590 GCTGATTTTT
65 GTTGATTTTT
* * *
25874600 TTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTTACCTCTTGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
25874665 GTTGA--TTT
65 GTTGATTTTT
* * * * *
25874673 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
25874738 GTTGATTTTT
65 GTTGATTTTT
* *
25874748 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTTACCTCTTGCAATATGA
1 TTG-AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
25874813 GTTGA--TTT
65 GTTGATTTTT
* * * * * *
25874821 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAAGTCACCTATCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
25874884 GTTGATTTTT
65 GTTGATTTTT
*
25874894 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTG-AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
25874959 GCTGATTTTT
65 GTTGATTTTT
* * *
25874969 TTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTTACCTCTTGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
25875034 GTTGA--TTT
65 GTTGATTTTT
* * * * * *
25875042 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAAGTCACCTATCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
25875105 GTTGATTTTT
65 GTTGATTTTT
* *
25875115 TTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCGACTCACCTCTCGCAATATGA
1 TTGAAAA-CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
25875180 GCTGATTTTT
65 GTTGATTTTT
* * *
25875190 TTTAAAGACAGCAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
25875255 GTTGA--GTT
65 GTTGATTTTT
* * * * *
25875263 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
25875328 GTTGATTTTT
65 GTTGATTTTT
* *
25875338 TT-AGAAACATAAATTAAAAA
1 TTGA-AAACAGAAATTGAAAA
25875358 ACGAAAATTG
Statistics
Matches: 654, Mismatches: 80, Indels: 47
0.84 0.10 0.06
Matches are distributed among these distances:
71 68 0.10
72 7 0.01
73 245 0.37
74 27 0.04
75 305 0.47
76 2 0.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (74 bp):
TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTT
Found at i:25874747 original size:148 final size:148
Alignment explanation
Indices: 25874558--25875423 Score: 1100
Period size: 148 Copynumber: 5.8 Consensus size: 148
25874548 CACCTCAGCA
* * * * *
25874558 TCTTAAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTAAAGACAGAAATTGAAAATA
1 TCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATA
*
25874623 CCTCAACGTGTCTTGAGGCTCAACTTACCTCTTGCAATATGAGTTGATTTTTGACAAACAAAAAT
66 CCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGACAAACAAAAAT
25874688 TGAAATTACCTCAGCGTG
131 TGAAATTACCTCAGCGTG
* *
25874706 TCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATA
1 TCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATA
*
25874771 CCTCAACGTGTCTTGAGGCTCAACTTACCTCTTGCAATATGAGTTGATTTTTGACAAACAAAAAT
66 CCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGACAAACAAAAAT
25874836 TGAAATTACCTCAGC--G
131 TGAAATTACCTCAGCGTG
* * *
25874852 TCTTGAGGTTCAAGTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATA
1 TCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATA
* * * * *
25874917 CCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTA-AAGACAGA
66 CCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA--TTTTTGACAA-ACAAA
* *
25874981 AATTGAAAATACCTCAACGTG
128 AATTGAAATTACCTCAGCGTG
* * * * *
25875002 TCTTGAGGCTCAACTTACCTCTTGCAATATGAGTTGA--TTTTTGACAAACAAAAATTGAAATTA
1 TCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATA
* * * * * *
25875065 CCTC-A-GCGTCTTGAGGTTCAAGTCACCTATCGCAATATGAGTTGATTTTTTTGA-AAAGCAGA
66 CCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA--TTTTTGACAAA-CAAA
* *
25875127 AATTGAAAATACCTCAACGTG
128 AATTGAAATTACCTCAGCGTG
* * * * * *
25875148 TCTTGAGGTTCGACTCACCTCTCGCAATATGAGCTGATTTTTTTTAAAGACAGCAATTGAAAATA
1 TCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATA
*
25875213 CCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGAGTTTTGACAAACAAAAAT
66 CCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGACAAACAAAAAT
25875278 TGAAATTACCTCAGCGTG
131 TGAAATTACCTCAGCGTG
* * *
25875296 TCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTAGAAACATAAATTAAAAAACG
1 TCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-G--------A--AAAACA-G
* * *
25875361 AAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
54 -AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTT
25875424 GAAAAGCAGA
Statistics
Matches: 630, Mismatches: 64, Indels: 35
0.86 0.09 0.05
Matches are distributed among these distances:
145 1 0.00
146 209 0.33
147 3 0.00
148 282 0.45
149 4 0.01
150 68 0.11
157 1 0.00
159 4 0.01
160 1 0.00
161 57 0.09
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.32
Consensus pattern (148 bp):
TCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATA
CCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGACAAACAAAAAT
TGAAATTACCTCAGCGTG
Found at i:25874921 original size:221 final size:221
Alignment explanation
Indices: 25874527--25875423 Score: 1165
Period size: 221 Copynumber: 4.0 Consensus size: 221
25874517 AACACAGAAA
* * * ** * * *
25874527 TTGAAGAACAGAAATGGAAAACACCTC-A-GCATCTTAAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
* * * * * * *
25874590 GCTGATTTTTTTTA-AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTTACCTC
66 GTTGA--TTTTTGACAA-ACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGCTCAACTCACCTA
* * * * *
25874654 TTGCAATATGAGTTGA--TTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
126 TCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTC
* *
25874717 AACTCACCTATCGCAATATGAGTTGATTTTT
191 AACTCACCTCTCGCAATATGAGCTGATTTTT
*
25874748 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTTACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
* *
25874813 GTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAAGTCACCTATCGCA
66 GTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGCTCAACTCACCTATCGCA
* *
25874878 ATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTC
131 ATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTC
25874943 ACCTCTCGCAATATGAGCTGATTTTT
196 ACCTCTCGCAATATGAGCTGATTTTT
* * *
25874969 TTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTTACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
* *
25875034 GTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAAGTCACCTATCGCA
66 GTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGCTCAACTCACCTATCGCA
* * * *
25875099 ATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCGACTC
131 ATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTC
25875164 ACCTCTCGCAATATGAGCTGATTTTT
196 ACCTCTCGCAATATGAGCTGATTTTT
* * *
25875190 TTTAAAGACAGCAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
* * * *
25875255 GTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCG
66 GTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGCTCAACTCACCTATCG
* *
25875320 CAATATGAGTTGATTTTTTTAGAAACATAAATTAAAAAACGAAAATTGAAAATACCTCAGCGTGT
129 CAATATGAGTTGATTTTTTT-G--------A--AAAACA-G-AAATTGAAAATACCTCAACGTGT
*
25875385 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
181 CCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
25875424 GAAAAGCAGA
Statistics
Matches: 610, Mismatches: 46, Indels: 25
0.90 0.07 0.04
Matches are distributed among these distances:
219 34 0.06
220 1 0.00
221 435 0.71
222 3 0.00
223 73 0.12
224 1 0.00
232 1 0.00
234 4 0.01
235 1 0.00
236 57 0.09
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (221 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
GTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGCTCAACTCACCTATCGCA
ATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTC
ACCTCTCGCAATATGAGCTGATTTTT
Found at i:25875572 original size:13 final size:13
Alignment explanation
Indices: 25875526--25875570 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
25875516 TTGATTTTTG
25875526 AAAAACAGAAATT
1 AAAAACAGAAATT
*
25875539 AAAAGCAGAAATT
1 AAAAACAGAAATT
*
25875552 GAAAAATAGAAATT
1 -AAAAACAGAAATT
25875566 AAAAA
1 AAAAA
25875571 TACCTCGGCG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 17 0.61
14 11 0.39
ACGTcount: A:0.69, C:0.04, G:0.11, T:0.16
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:25875597 original size:100 final size:99
Alignment explanation
Indices: 25875348--25875614 Score: 385
Period size: 100 Copynumber: 2.7 Consensus size: 99
25875338 TTAGAAACAT
* *
25875348 AAATTAAAAAAC-GAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
1 AAATTGAAAAACAG-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAAT
* * * *
25875412 ATGAGTTGATTTGAAAAGCAGAATTTGTAAGGCAA
65 ATGAGTTGATTTGAAAAACAGAAATTGAAAAGCAA
*
25875447 AAATTGAAAAACAGAAATTGAAAATACCTCAGCGCGCCCTGAGGCTCAACTCACCTCTCGCAATA
1 AAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATA
*
25875512 TGAGTTGATTTTTGAAAAACAGAAATT-AAAAGCAG
66 TGAGTTGA--TTTGAAAAACAGAAATTGAAAAGCAA
* * * *
25875547 AAATTGAAAAATAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATA
1 AAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATA
25875612 TGA
66 TGA
25875615 CCTGAGGCCC
Statistics
Matches: 152, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
99 68 0.45
100 69 0.45
101 15 0.10
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.22
Consensus pattern (99 bp):
AAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTGAAAAACAGAAATTGAAAAGCAA
Found at i:25875622 original size:31 final size:31
Alignment explanation
Indices: 25875587--25875645 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
25875577 GGCGTGCCCC
*
25875587 GAGGCTCAACTCACCTCTCGCAATATGACCT
1 GAGGCCCAACTCACCTCTCGCAATATGACCT
25875618 GAGGCCCAACTCACCTCTCGCAATATGA
1 GAGGCCCAACTCACCTCTCGCAATATGA
25875646 GTTGATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.27, C:0.36, G:0.17, T:0.20
Consensus pattern (31 bp):
GAGGCCCAACTCACCTCTCGCAATATGACCT
Found at i:25875703 original size:13 final size:13
Alignment explanation
Indices: 25875657--25875701 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
25875647 TTGATTTTTG
25875657 AAAAACAGAAATT
1 AAAAACAGAAATT
*
25875670 AAAAGCAGAAATT
1 AAAAACAGAAATT
*
25875683 GAAAAATAGAAATT
1 -AAAAACAGAAATT
25875697 AAAAA
1 AAAAA
25875702 TACCTCGGCG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 17 0.61
14 11 0.39
ACGTcount: A:0.69, C:0.04, G:0.11, T:0.16
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:25875743 original size:131 final size:129
Alignment explanation
Indices: 25875484--25875801 Score: 435
Period size: 131 Copynumber: 2.4 Consensus size: 129
25875474 CTCAGCGCGC
*
25875484 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGCAGAA
1 CCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGCAGAA
**
25875549 ATTGAAAAATAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
66 ATTGAAAAATAGAAATTAAAAATACCTCGGCGTG-CCCGAGGCTCAAAACACCTCTC-CAATATG
25875614 A
129 A
25875615 CCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGCAGAA
1 CCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGCAGAA
*** ** *
25875680 ATTGAAAAATAGAAATTAAAAATACCTCGGCGTG-TTTAGTTTACTAAAACAGGGCCT-T-TAAT
66 ATTGAAAAATAGAAATTAAAAATACCTCGGCGTGCCCGAGGCT-C-AAAACA---CCTCTCCAAT
25875742 ATGA
126 ATGA
* *
25875746 CCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGACTTTTTTGAAAGATAGAAAT
1 CCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAAT
25875802 AAATACATCA
Statistics
Matches: 169, Mismatches: 11, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
129 3 0.02
130 1 0.01
131 145 0.86
133 17 0.10
134 3 0.02
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.25
Consensus pattern (129 bp):
CCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGCAGAA
ATTGAAAAATAGAAATTAAAAATACCTCGGCGTGCCCGAGGCTCAAAACACCTCTCCAATATGA
Found at i:25887865 original size:25 final size:23
Alignment explanation
Indices: 25887813--25887867 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 23
25887803 TATAAATAGT
25887813 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
*
25887836 TATAGTGTTAGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
25887861 AATAGTG
1 AATAGTG
25887868 AAAATATAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 12 0.44
24 2 0.07
25 13 0.48
ACGTcount: A:0.45, C:0.04, G:0.16, T:0.35
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:25887980 original size:22 final size:22
Alignment explanation
Indices: 25887955--25887996 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
25887945 TATAGTGTAA
*
25887955 AAAATACATAAATAATATAATT
1 AAAATACATAAATAAGATAATT
* *
25887977 AAAATATATACATAAGATAA
1 AAAATACATAAATAAGATAA
25887997 CATGTAGAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.29
Consensus pattern (22 bp):
AAAATACATAAATAAGATAATT
Found at i:25888041 original size:29 final size:27
Alignment explanation
Indices: 25887958--25888050 Score: 98
Period size: 29 Copynumber: 3.3 Consensus size: 27
25887948 AGTGTAAAAA
25887958 ATACATAAATAATATA-ATTAAAATAT
1 ATACATAAATAATATATATTAAAATAT
* * **
25887984 ATACATAAGATAACATGTAGAAAATATAT
1 ATACATAA-ATAATATATATTAAA-ATAT
*
25888013 ATATATAAATAATATAATATTAAAGATAT
1 ATACATAAATAATAT-ATATTAAA-ATAT
25888042 ATACATAAA
1 ATACATAAA
25888051 ATAGTATAAT
Statistics
Matches: 52, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
26 8 0.15
27 6 0.12
28 10 0.19
29 28 0.54
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.32
Consensus pattern (27 bp):
ATACATAAATAATATATATTAAAATAT
Found at i:25888658 original size:30 final size:30
Alignment explanation
Indices: 25888624--25888689 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
25888614 GTACAAGTGA
*
25888624 TGGTGGAGCAAGTGTGGCTAGTGGAGTAGG
1 TGGTGGAGCAAGTGTGGCTAATGGAGTAGG
*
25888654 TGGTGGAGCAAGTGTGGCTAATGGAGTTGG
1 TGGTGGAGCAAGTGTGGCTAATGGAGTAGG
25888684 TGGTGG
1 TGGTGG
25888690 CAAAGGCTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.18, C:0.06, G:0.50, T:0.26
Consensus pattern (30 bp):
TGGTGGAGCAAGTGTGGCTAATGGAGTAGG
Found at i:25891496 original size:31 final size:30
Alignment explanation
Indices: 25891461--25891548 Score: 104
Period size: 31 Copynumber: 2.9 Consensus size: 30
25891451 TCTTTAAATA
25891461 TATATAATTAAATAAAAATTAAAATTTCAAG
1 TATATAATTAAAT-AAAATTAAAATTTCAAG
* * *
25891492 TATATATTTAAACTACAATTAAAATTTCACG
1 TATATAATTAAA-TAAAATTAAAATTTCAAG
* * *
25891523 TGTATAATTACATCAAATTAAAATTT
1 TATATAATTAAATAAAATTAAAATTT
25891549 ATGTATAATT
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
30 12 0.25
31 35 0.73
32 1 0.02
ACGTcount: A:0.50, C:0.08, G:0.03, T:0.39
Consensus pattern (30 bp):
TATATAATTAAATAAAATTAAAATTTCAAG
Found at i:25898397 original size:94 final size:94
Alignment explanation
Indices: 25898295--25898468 Score: 235
Period size: 94 Copynumber: 1.9 Consensus size: 94
25898285 TGTATTTTTA
* * * *
25898295 CCATTTATGTTCAATAAAAAGGGT-TAA-GGAAGAGGTGTGCTCAATTATCAAATAGGTAAATTT
1 CCATTTATGTT-AA-AAAAAGAGTGTAAGGGAAGAGGCGTGCTAAATTATCAAATAGGTAAATTA
25898358 AAAGAGTGTGATGAAAAGTTCCATTTTTTGG
64 AAAGAGTGTGATGAAAAGTTCCATTTTTTGG
* * *
25898389 CCATTTATGTTAAACAAAGAGTGTAAGGGAGGGGGCGTGCTAAATTATCAAATAGGTAAATTAAA
1 CCATTTATGTTAAAAAAAGAGTGTAAGGGAAGAGGCGTGCTAAATTATCAAATAGGTAAATTAAA
* *
25898454 ATAGTGTGGTGAAAA
66 AGAGTGTGATGAAAA
25898469 TTTTGGTTTT
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
92 7 0.10
93 5 0.07
94 57 0.83
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (94 bp):
CCATTTATGTTAAAAAAAGAGTGTAAGGGAAGAGGCGTGCTAAATTATCAAATAGGTAAATTAAA
AGAGTGTGATGAAAAGTTCCATTTTTTGG
Found at i:25902071 original size:11 final size:11
Alignment explanation
Indices: 25902056--25902103 Score: 69
Period size: 11 Copynumber: 4.3 Consensus size: 11
25902046 CCAACCCCTT
* *
25902056 GCATGATTCAT
1 GCATGAATCAA
25902067 GCATGAAATCAA
1 GCATG-AATCAA
25902079 GCATGAATCAA
1 GCATGAATCAA
25902090 GCATGAATCAA
1 GCATGAATCAA
25902101 GCA
1 GCA
25902104 ACTATCAACA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
11 25 0.74
12 9 0.26
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.21
Consensus pattern (11 bp):
GCATGAATCAA
Found at i:25902093 original size:23 final size:22
Alignment explanation
Indices: 25902056--25902103 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
25902046 CCAACCCCTT
* *
25902056 GCATGATTCATGCATGAAATCAA
1 GCATGAATCAAGCATG-AATCAA
25902079 GCATGAATCAAGCATGAATCAA
1 GCATGAATCAAGCATGAATCAA
25902101 GCA
1 GCA
25902104 ACTATCAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.21
Consensus pattern (22 bp):
GCATGAATCAAGCATGAATCAA
Found at i:25902110 original size:22 final size:23
Alignment explanation
Indices: 25902067--25902111 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
25902057 CATGATTCAT
**
25902067 GCATGAAATCAAGCATGAATCAA
1 GCATGAAATCAAGCAACAATCAA
*
25902090 GCATG-AATCAAGCAACTATCAA
1 GCATGAAATCAAGCAACAATCAA
25902112 CATCCCTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.47, C:0.20, G:0.16, T:0.18
Consensus pattern (23 bp):
GCATGAAATCAAGCAACAATCAA
Found at i:25907512 original size:43 final size:43
Alignment explanation
Indices: 25907447--25907601 Score: 258
Period size: 43 Copynumber: 3.6 Consensus size: 43
25907437 ACGGCATTAC
*
25907447 GCCTGCTAGGCACGAAGACCCGAATACACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
25907490 GCCTGCTAGGCACGAAGGCCCGAATACACATCA-TCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACT-GGCACGAA
* * *
25907533 GCCTACTAGGCACGAAGGCTCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
25907576 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
25907602 TAATACCAAC
Statistics
Matches: 104, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
42 1 0.01
43 103 0.99
ACGTcount: A:0.31, C:0.32, G:0.25, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
Found at i:25907647 original size:38 final size:38
Alignment explanation
Indices: 25907617--25907716 Score: 175
Period size: 37 Copynumber: 2.7 Consensus size: 38
25907607 CCAACATTAG
*
25907617 GCCTGCGGGATTTAACCTGGATATATTACCAGCACGAA
1 GCCTGCGGGATTTAACCCGGATATATTACCAGCACGAA
*
25907655 GCCTGTGGGATTTAACCCGGATATATTA-CAGCACGAA
1 GCCTGCGGGATTTAACCCGGATATATTACCAGCACGAA
25907692 GCCTGCGGGATTTAACCCGGATATA
1 GCCTGCGGGATTTAACCCGGATATA
25907717 ATTCAGCATA
Statistics
Matches: 59, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
37 33 0.56
38 26 0.44
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (38 bp):
GCCTGCGGGATTTAACCCGGATATATTACCAGCACGAA
Found at i:25910827 original size:50 final size:49
Alignment explanation
Indices: 25910710--25910896 Score: 207
Period size: 50 Copynumber: 3.8 Consensus size: 49
25910700 TGAGGTCGCA
* * * * *
25910710 TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGAAAACTGT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTGTAGGTCACG
**
25910761 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-AGGTCACG
* * *
25910811 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
* *
25910860 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
25910897 TAGCTTCGGC
Statistics
Matches: 118, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
47 1 0.01
48 4 0.03
49 40 0.34
50 43 0.36
51 30 0.25
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
Found at i:25914264 original size:90 final size:90
Alignment explanation
Indices: 25914100--25914277 Score: 223
Period size: 90 Copynumber: 2.0 Consensus size: 90
25914090 AGTAAGATGC
* * * **
25914100 CAACGCCATATCCCAGATATGGTCTTACATGAGATCACAACTCGATGCCAATGCCATGTCCTGGA
1 CAACGCCATATCCCAGATATGGTCTTACATGAGAACACAACTCAATGCCAATGCCATATCCCAGA
* *
25914165 CATGGTCTTACATGGGATCTCATAT
66 CATGATCTTACACGGGATCTCATAT
* * **
25914190 CAACGCCATATCTCAGATATGGTCTTACATGATAACACATAC-CAATGCTGATGCCATATCCCAG
1 CAACGCCATATCCCAGATATGGTCTTACATGAGAACACA-ACTCAATGCCAATGCCATATCCCAG
* *
25914254 ATATGATCTTATACGGGATCTCAT
65 ACATGATCTTACACGGGATCTCAT
25914278 CAACCCACAT
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
90 72 0.97
91 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (90 bp):
CAACGCCATATCCCAGATATGGTCTTACATGAGAACACAACTCAATGCCAATGCCATATCCCAGA
CATGATCTTACACGGGATCTCATAT
Found at i:25918362 original size:48 final size:48
Alignment explanation
Indices: 25918300--25918541 Score: 380
Period size: 48 Copynumber: 5.0 Consensus size: 48
25918290 TACAAGACAA
* *
25918300 ATATATATATGTGGTAAAGCCGTATGGCTAAGGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAAGGTGAAATATGTATGAG
25918348 ATATGTATATGTGGTAAAGCCGAATGGCT-AGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAAG-GTGAAATATGTATGAG
* * * *
25918396 ATATATTTATGTGGTAAAGCCGTATGGCTAAGGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAAGGTGAAATATGTATGAG
25918444 ATATGTATATGTGGTAAAGCCGAATGGCT-AGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAAG-GTGAAATATGTATGAG
* *
25918492 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAAGGTGAAATATGTATGAG
25918540 AT
1 AT
25918542 GTGTGTATAT
Statistics
Matches: 178, Mismatches: 12, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
47 4 0.02
48 171 0.96
49 3 0.02
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAAGGTGAAATATGTATGAG
Found at i:25918456 original size:96 final size:96
Alignment explanation
Indices: 25918300--25918541 Score: 430
Period size: 96 Copynumber: 2.5 Consensus size: 96
25918290 TACAAGACAA
25918300 ATATATATATGTGGTAAAGCCGTATGGCTAAGGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATATATATGTGGTAAAGCCGTATGGCTAAGGTGAAATATGTATGAGATATGTATATGTGGTAA
25918365 AGCCGAATGGCTAGTGTGAAATATGTATGAG
66 AGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
25918396 ATATATTTATGTGGTAAAGCCGTATGGCTAAGGTGAAATATATATGAGATATGTATATGTGGTAA
1 ATATATATATGTGGTAAAGCCGTATGGCTAAGGTGAAATATGTATGAGATATGTATATGTGGTAA
25918461 AGCCGAATGGCTAGTGTGAAATATGTATGAG
66 AGCCGAATGGCTAGTGTGAAATATGTATGAG
* * * *
25918492 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGAT
1 ATATATATATGTGGTAAAGCCGTATGGCTAAGGTGAAATATGTATGAGAT
25918542 GTGTGTATAT
Statistics
Matches: 138, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 138 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (96 bp):
ATATATATATGTGGTAAAGCCGTATGGCTAAGGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:25920918 original size:36 final size:36
Alignment explanation
Indices: 25920871--25920942 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
25920861 CATGTTCCTA
*
25920871 GCTTTAGATTTCACTATTAGGTGCTTCCATTTATCT
1 GCTTTAGATTTCACTATTAGATGCTTCCATTTATCT
25920907 GCTTTAGATTTCACTATTAGATGCTTCCATTTATCT
1 GCTTTAGATTTCACTATTAGATGCTTCCATTTATCT
25920943 TTCTTGAAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.47
Consensus pattern (36 bp):
GCTTTAGATTTCACTATTAGATGCTTCCATTTATCT
Found at i:25933049 original size:46 final size:46
Alignment explanation
Indices: 25932999--25933905 Score: 1636
Period size: 46 Copynumber: 19.7 Consensus size: 46
25932989 GATAGAAAAT
25932999 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
25933045 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
25933091 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
25933137 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
25933183 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
25933229 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
25933275 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
25933321 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
25933367 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
25933413 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
25933459 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
25933505 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
25933551 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
25933597 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
25933643 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
25933689 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
*
25933735 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
* *** *
25933781 GTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACGGGGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA-TATGAAAC
** * * * * *
25933828 GAATAAGACCATGGTTGAATGATACCGTGGCAACATGACA-GAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAAC
* * * *
25933874 GAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCA
25933906 TCATGTCGAA
Statistics
Matches: 841, Mismatches: 18, Indels: 4
0.97 0.02 0.00
Matches are distributed among these distances:
45 1 0.00
46 802 0.95
47 38 0.05
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.21
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
Found at i:25938681 original size:17 final size:17
Alignment explanation
Indices: 25938661--25938711 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
25938651 TGAAGAAGGG
*
25938661 AGCAAAATAGAAAGAGA
1 AGCAAAATAGAAAGAAA
* *
25938678 AGCAAAAGAGAATGAAA
1 AGCAAAATAGAAAGAAA
*
25938695 AGTAAAATA-AAA-AAA
1 AGCAAAATAGAAAGAAA
25938710 AG
1 AG
25938712 GGAAGTTAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
15 5 0.18
16 2 0.07
17 21 0.75
ACGTcount: A:0.69, C:0.04, G:0.20, T:0.08
Consensus pattern (17 bp):
AGCAAAATAGAAAGAAA
Found at i:25944527 original size:51 final size:51
Alignment explanation
Indices: 25944463--25944598 Score: 155
Period size: 51 Copynumber: 2.7 Consensus size: 51
25944453 TGGAAACATG
*
25944463 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * * ** * * ** *
25944514 ATCTTATAAGATATTATTTTATAAGATTACATATCTTATCTAAGATATGTA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* *
25944565 ATCTTAGAAGATATGATATTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATATTATAATCTTAGAGAT
25944599 TTGATGGTAG
Statistics
Matches: 66, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
51 66 1.00
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.41
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
Found at i:25946487 original size:96 final size:96
Alignment explanation
Indices: 25946321--25946606 Score: 464
Period size: 96 Copynumber: 3.0 Consensus size: 96
25946311 GTGTCCGAGG
* * * * *
25946321 AAGTCTGTTATCGATGGGAATGATCGAGCAGATACGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATGGAGCAGATAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
*
25946386 AAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
66 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
*
25946417 AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATGGAGCAGATAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
*
25946482 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGT
66 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
* * *
25946513 AAGTTTGTCATCGCAGGGAACGATGGAGTAGATAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATGGAGCAGATAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
*
25946578 TAAAGCCGAAGCCAAGAGGGCTAAGAGGA
66 TAAAGCCGAAGCCAAGAGGGCAAAGAGGA
25946607 ACAAAAAGAA
Statistics
Matches: 177, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 177 1.00
ACGTcount: A:0.35, C:0.17, G:0.35, T:0.13
Consensus pattern (96 bp):
AAGTCTGTCATCGAAGGGAACGATGGAGCAGATAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
Found at i:25953634 original size:25 final size:25
Alignment explanation
Indices: 25953606--25953653 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
25953596 TGTACACGTG
* *
25953606 TATGCTCACATGGGCTGTAAATCAA
1 TATGCTCACACGAGCTGTAAATCAA
* *
25953631 TATGTTCTCACGAGCTGTAAATC
1 TATGCTCACACGAGCTGTAAATC
25953654 GGAATACTCT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (25 bp):
TATGCTCACACGAGCTGTAAATCAA
Found at i:25971067 original size:44 final size:44
Alignment explanation
Indices: 25971000--25971088 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 44
25970990 AAGGTGAAAG
25971000 TATGTTTCTTTCACAATCAAGGTTATTGGCAAATGACGCGTCCT
1 TATGTTTCTTTCACAATCAAGGTTATTGGCAAATGACGCGTCCT
** *
25971044 TATGTTTCTTTCACTGTCGAGGTTATTGGCAAATGACGCGTCCT
1 TATGTTTCTTTCACAATCAAGGTTATTGGCAAATGACGCGTCCT
25971088 T
1 T
25971089 TTTAGTAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.38
Consensus pattern (44 bp):
TATGTTTCTTTCACAATCAAGGTTATTGGCAAATGACGCGTCCT
Found at i:25974778 original size:40 final size:39
Alignment explanation
Indices: 25974694--25974957 Score: 298
Period size: 40 Copynumber: 6.6 Consensus size: 39
25974684 TCGAATGATG
* * * *
25974694 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
25974734 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
25974774 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
25974813 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
* *
25974853 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
25974892 TCCGGGTTAAGTCCCGAAGGCAATTGTGTGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
25974933 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
25974958 AATCAGTAGC
Statistics
Matches: 191, Mismatches: 28, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
39 69 0.36
40 112 0.59
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:25974830 original size:79 final size:80
Alignment explanation
Indices: 25974694--25974957 Score: 367
Period size: 79 Copynumber: 3.3 Consensus size: 80
25974684 TCGAATGATG
* * * **
25974694 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
25974757 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAT
*
25974774 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
25974838 GTGCGAGATACTAAT
66 GTGCGAGATACTAAT
*
25974853 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
* *
25974917 GTGTGAGTTACT-AT
66 GTGCGAGATACTAAT
* *
25974931 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
25974958 AATCAGTAGC
Statistics
Matches: 168, Mismatches: 12, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
78 3 0.02
79 133 0.79
80 32 0.19
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAT
Found at i:25974908 original size:119 final size:121
Alignment explanation
Indices: 25974694--25974957 Score: 344
Period size: 119 Copynumber: 2.2 Consensus size: 121
25974684 TCGAATGATG
* * *
25974694 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTGACAATATCCGGACTAAGACCCGAAGGCATT
* * *
25974758 TGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTA-AA
66 TGTGCAAGATACTAAATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACTATAA
* *
25974813 TCCGGGTTAAGTCCCGAAGGCATTTGTGCG-AGAT-ACTAAT-TCCGGGCTAAG-CCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TGAC-AATATCCGGACTAAGACCCGAAGGCA
* * *
25974874 TTTGTGCAAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGTGAGTTACTATAA
64 TTTGTGCAAGATACTAAATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACTATAA
*
25974933 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
25974958 AATCAGTAGC
Statistics
Matches: 127, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
118 34 0.27
119 81 0.64
120 12 0.09
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (121 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTGACAATATCCGGACTAAGACCCGAAGGCATT
TGTGCAAGATACTAAATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACTATAA
Found at i:25981977 original size:38 final size:38
Alignment explanation
Indices: 25981923--25981998 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
25981913 GCGGTGTGCA
*
25981923 TGTCTAGGATTGGATCCGAAGGGAGCTTGGTACTTAAG
1 TGTCTAGGATTAGATCCGAAGGGAGCTTGGTACTTAAG
*
25981961 TGTCTAGGATTAGATCCGAAGGGAGCTTGGTATTTAAG
1 TGTCTAGGATTAGATCCGAAGGGAGCTTGGTACTTAAG
25981999 CAGTCCGATG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.25, C:0.12, G:0.33, T:0.30
Consensus pattern (38 bp):
TGTCTAGGATTAGATCCGAAGGGAGCTTGGTACTTAAG
Found at i:25982395 original size:50 final size:50
Alignment explanation
Indices: 25982330--25982429 Score: 182
Period size: 50 Copynumber: 2.0 Consensus size: 50
25982320 CCTGTTTCAG
* *
25982330 GGTTCGACTGCTCTGACCTTCATGCATTACGACTTATATATCTCCCTGTA
1 GGTTCGACTACTCTGACCTTCATGCATTACGACTTAGATATCTCCCTGTA
25982380 GGTTCGACTACTCTGACCTTCATGCATTACGACTTAGATATCTCCCTGTA
1 GGTTCGACTACTCTGACCTTCATGCATTACGACTTAGATATCTCCCTGTA
25982430 CAGGGCTTCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (50 bp):
GGTTCGACTACTCTGACCTTCATGCATTACGACTTAGATATCTCCCTGTA
Found at i:25982607 original size:56 final size:56
Alignment explanation
Indices: 25982541--25982652 Score: 181
Period size: 56 Copynumber: 2.0 Consensus size: 56
25982531 AATGATCTTC
*
25982541 CAAAGTCAGAATAGGGAATCCAG-AATTCGCTCTGGCCCTATTTCACGAAAACTTAA
1 CAAAGTCAGAACAGGGAATCCAGAAATT-GCTCTGGCCCTATTTCACGAAAACTTAA
* *
25982597 CAAAGTCAGAACAGGGGATCCAGAAATTGCTCTGGCCCTGTTTCACGAAAACTTAA
1 CAAAGTCAGAACAGGGAATCCAGAAATTGCTCTGGCCCTATTTCACGAAAACTTAA
25982653 ACATCCCTTA
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
56 48 0.92
57 4 0.08
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (56 bp):
CAAAGTCAGAACAGGGAATCCAGAAATTGCTCTGGCCCTATTTCACGAAAACTTAA
Found at i:25983459 original size:49 final size:49
Alignment explanation
Indices: 25983387--25983482 Score: 165
Period size: 49 Copynumber: 2.0 Consensus size: 49
25983377 AATCGACTGA
* *
25983387 GCGAATACTATTTAAAAGGAATCAACTATTCCAATGCATATACGAAAGT
1 GCGAATAATATTTAAAAGGAATCAACTACTCCAATGCATATACGAAAGT
*
25983436 GCGAATAATATTTAGAAGGAATCAACTACTCCAATGCATATACGAAA
1 GCGAATAATATTTAAAAGGAATCAACTACTCCAATGCATATACGAAA
25983483 CATACCTCAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.25
Consensus pattern (49 bp):
GCGAATAATATTTAAAAGGAATCAACTACTCCAATGCATATACGAAAGT
Found at i:25983637 original size:40 final size:39
Alignment explanation
Indices: 25983560--25983738 Score: 209
Period size: 40 Copynumber: 4.5 Consensus size: 39
25983550 AAACCAAGTA
* * *
25983560 CCTTCGGGATTTAG-CCGGATATAG-CTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGG-TATAGTC-ACTAGCACAAATG
* * *
25983599 CCTTCGGGACTTAGCTCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGG-TATAGTCACTAGCACAAATG
* *
25983639 CCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGTA-TAGTCACTAGCACAAATG
* *
25983679 CCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGTA-TAGTCACTAGCACAAATG
25983719 CCTTCGGGACTTAGCCCGGT
1 CCTTCGGGACTTAGCCCGGT
25983739 TATCATCCGA
Statistics
Matches: 125, Mismatches: 12, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
39 14 0.11
40 111 0.89
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGTATAGTCACTAGCACAAATG
Found at i:25991633 original size:40 final size:40
Alignment explanation
Indices: 25991589--25992109 Score: 938
Period size: 40 Copynumber: 13.0 Consensus size: 40
25991579 GCTACTCGCT
* * * * *
25991589 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGTA
1 CAAATGCCTTCGGGGCTTAGCCCGGAAT-TAGTCACTAGCA
* * *
25991629 CAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAACTCGCA
1 CAAATGCCTTCGGGGCTTAGCCCGGAAT-TAGTCACTAGCA
25991669 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCA
25991709 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCA
25991749 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCA
25991789 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCA
25991829 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCA
25991869 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCA
25991909 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCA
25991949 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCA
25991989 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCA
25992029 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCA
25992069 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCA
25992109 C
1 C
25992110 NNNNNNNNNN
Statistics
Matches: 475, Mismatches: 5, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
40 473 1.00
41 2 0.00
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCA
Found at i:25995998 original size:26 final size:26
Alignment explanation
Indices: 25995961--25996018 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
25995951 TGATACAAAT
25995961 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
25995987 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
25996013 TGATAA
1 TGATAA
25996019 GAATTTCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:25999487 original size:17 final size:20
Alignment explanation
Indices: 25999451--25999487 Score: 53
Period size: 17 Copynumber: 2.0 Consensus size: 20
25999441 TAATCAGGCC
25999451 CAAACTACCCAGTAGACCCA
1 CAAACTACCCAGTAGACCCA
25999471 CAAAC-ACCC-GT-GACCCA
1 CAAACTACCCAGTAGACCCA
25999488 ATTAAAACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 6 0.35
18 2 0.12
19 4 0.24
20 5 0.29
ACGTcount: A:0.38, C:0.43, G:0.11, T:0.08
Consensus pattern (20 bp):
CAAACTACCCAGTAGACCCA
Found at i:26012411 original size:83 final size:83
Alignment explanation
Indices: 26012317--26012476 Score: 221
Period size: 83 Copynumber: 1.9 Consensus size: 83
26012307 GAAGCAGATC
* * * * *
26012317 CAAGATGATTTGGTATTCTTATGTTTACAAGAAACAAATCAAGGACGTTGCAGATATGACTCTCA
1 CAAGATGATTTGGCATCCTTATGCTTACAAGAAACAAATCAAGGACATAGCAGATATGACTCTCA
*
26012382 AATGTTCTCAAACAGACT
66 AACGTTCTCAAACAGACT
* * * *
26012400 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
1 CAAGATGATTTGGCATCCTTATGCTTACAAGAAACAAATCAAGGACATAGCAGATATGACTCTCA
*
26012465 GACGTTCTCAAA
66 AACGTTCTCAAA
26012477 TATAGCAGAT
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
83 66 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (83 bp):
CAAGATGATTTGGCATCCTTATGCTTACAAGAAACAAATCAAGGACATAGCAGATATGACTCTCA
AACGTTCTCAAACAGACT
Found at i:26012620 original size:184 final size:184
Alignment explanation
Indices: 26012311--26012648 Score: 588
Period size: 184 Copynumber: 1.8 Consensus size: 184
26012301 TATATTGAAG
*
26012311 CAGATCCAAGATGATTTGGTATTCTTATGTTTACAAGAAACAAATCAAGGACGTTGCAGATATGA
1 CAGATCCAAGATGATTTGGCATTCTTATGTTTACAAGAAACAAATCAAGGACGTTGCAGATATGA
*
26012376 CTCTCAAATGTTCTCAAACAGACTCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCG
66 CTCTCAAATGTTCTCAAACAGACTCAAGATGATTTGGCATCCTTGTACTTACAAGGAACAAATCG
*
26012441 AGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAGCAGATCTAACCTT
131 AGGACATAGCAGATATGACTCTCAGACGTTCTCAAATATAGCAGATCTAACCTT
* *
26012495 CAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGAAACAAATCGAGGACGTTGCAGATATGA
1 CAGATCCAAGATGATTTGGCATTCTTATGTTTACAAGAAACAAATCAAGGACGTTGCAGATATGA
*
26012560 CTCTCAAATGTTCTCAAACAGATTCAAGATTG-TTTGGCATCCTTGTACTTACAAGGAACAAATC
66 CTCTCAAATGTTCTCAAACAGACTCAAGA-TGATTTGGCATCCTTGTACTTACAAGGAACAAATC
* *
26012624 GAGGACGTTGCAGATATGACTCTCA
130 GAGGACATAGCAGATATGACTCTCA
26012649 AATGTCCTCA
Statistics
Matches: 145, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
184 143 0.99
185 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.28
Consensus pattern (184 bp):
CAGATCCAAGATGATTTGGCATTCTTATGTTTACAAGAAACAAATCAAGGACGTTGCAGATATGA
CTCTCAAATGTTCTCAAACAGACTCAAGATGATTTGGCATCCTTGTACTTACAAGGAACAAATCG
AGGACATAGCAGATATGACTCTCAGACGTTCTCAAATATAGCAGATCTAACCTT
Found at i:26012634 original size:83 final size:83
Alignment explanation
Indices: 26012495--26012712 Score: 348
Period size: 83 Copynumber: 2.6 Consensus size: 83
26012485 ATCTAACCTT
* * * *
26012495 CAGATCCAAGA-TGATTTGGCATTCTTGTGTTTACAAGAAACAAATCGAGGACGTTGCAGATATG
1 CAGATTCAAGATTG-TTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTTGCAGATATG
*
26012559 ACTCTCAAATGTTCTCAAA
65 ACTCTCAAATGTCCTCAAA
*
26012578 CAGATTCAAGATTGTTTGGCATCCTTGTACTTACAAGGAACAAATCGAGGACGTTGCAGATATGA
1 CAGATTCAAGATTGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTTGCAGATATGA
26012643 CTCTCAAATGTCCTCAAA
66 CTCTCAAATGTCCTCAAA
* *
26012661 CAGACTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGAC
1 CAGATTCAAGATTGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGAC
26012713 TACTTAATCA
Statistics
Matches: 125, Mismatches: 9, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
83 123 0.98
84 2 0.02
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.27
Consensus pattern (83 bp):
CAGATTCAAGATTGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTTGCAGATATGA
CTCTCAAATGTCCTCAAA
Found at i:26014006 original size:53 final size:53
Alignment explanation
Indices: 26013926--26014031 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
26013916 CACTAAGGCA
26013926 GGAAACCCTAGGGTTTCTGCCTTTCTCCTCGCGCCGCAAGCAAAAGCTTCCAG
1 GGAAACCCTAGGGTTTCTGCCTTTCTCCTCGCGCCGCAAGCAAAAGCTTCCAG
*
26013979 GGAAACCCTAGGGTTTCTGCCTTTCTCCTCGCGCCGCAAGCAGAAGCTTCCAG
1 GGAAACCCTAGGGTTTCTGCCTTTCTCCTCGCGCCGCAAGCAAAAGCTTCCAG
26014032 AAGCAATTTC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.20, C:0.34, G:0.24, T:0.23
Consensus pattern (53 bp):
GGAAACCCTAGGGTTTCTGCCTTTCTCCTCGCGCCGCAAGCAAAAGCTTCCAG
Found at i:26027026 original size:28 final size:24
Alignment explanation
Indices: 26026976--26027034 Score: 73
Period size: 28 Copynumber: 2.3 Consensus size: 24
26026966 ATACTTTTTA
*
26026976 ATAATTATAATTAAATATGTCTTT
1 ATAATTATAATTAAATATATCTTT
26027000 ATAATTATAATTAAACATATATATCTTT
1 ATAATTATAATT--A-A-ATATATCTTT
26027028 ATAATTA
1 ATAATTA
26027035 AATATTTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 12 0.40
26 1 0.03
27 1 0.03
28 16 0.53
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.47
Consensus pattern (24 bp):
ATAATTATAATTAAATATATCTTT
Found at i:26027052 original size:22 final size:21
Alignment explanation
Indices: 26026978--26027058 Score: 63
Period size: 22 Copynumber: 3.6 Consensus size: 21
26026968 ACTTTTTAAT
26026978 AATTATAATTAAATATGTCTTTA
1 AATTATAATTAAATAT-T-TTTA
* * *
26027001 TAATTATAATTAAACATATATA
1 -AATTATAATTAAATATTTTTA
**
26027023 TCTTTATAATTAAATATTTTTA
1 -AATTATAATTAAATATTTTTA
*
26027045 AATATATATTTAAA
1 AAT-TATAATTAAA
26027059 AAAGTGATGT
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
21 1 0.02
22 29 0.64
24 15 0.33
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.48
Consensus pattern (21 bp):
AATTATAATTAAATATTTTTA
Found at i:26027804 original size:1 final size:1
Alignment explanation
Indices: 26027798--26027823 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
26027788 CTTCTTCTTC
26027798 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
26027824 GCTTTAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:26029534 original size:16 final size:18
Alignment explanation
Indices: 26029508--26029540 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
26029498 TAAAATTGAG
26029508 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
26029525 TTGA-AAAATTAATTTA
1 TTGAGAAAATTAATTTA
26029541 GTGGTTTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:26030935 original size:5 final size:5
Alignment explanation
Indices: 26030927--26030953 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
26030917 GAATAATAGT
26030927 AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AA
26030954 CTTGACCAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:26031580 original size:27 final size:28
Alignment explanation
Indices: 26031524--26031578 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
26031514 ATTTTTAAAA
* * *
26031524 TAATTTATTTAAATTTTCAATATTCATT
1 TAATTTATTAAAATTTTAAAAATTCATT
26031552 TAATTT-TTAAAATTTTAAAAATT-ATT
1 TAATTTATTAAAATTTTAAAAATTCATT
26031578 T
1 T
26031579 TATATCTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 4 0.17
27 14 0.58
28 6 0.25
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (28 bp):
TAATTTATTAAAATTTTAAAAATTCATT
Found at i:26049060 original size:17 final size:17
Alignment explanation
Indices: 26049040--26049076 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
26049030 ACTCCTTTTT
26049040 ATTTATCTATGCTCTTC
1 ATTTATCTATGCTCTTC
26049057 ATTTATCTATGCTCTTC
1 ATTTATCTATGCTCTTC
26049074 ATT
1 ATT
26049077 GCATATGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.19, C:0.22, G:0.05, T:0.54
Consensus pattern (17 bp):
ATTTATCTATGCTCTTC
Found at i:26052255 original size:53 final size:53
Alignment explanation
Indices: 26052075--26052281 Score: 189
Period size: 53 Copynumber: 3.8 Consensus size: 53
26052065 ATTAGGGTTT
* * * * * *
26052075 AAGGATACCAAGTAAGACCATGCCAAGGCATGACATTGGTAAGTTTTACAAGGC
1 AAGGATACCAAATAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * ** * * * * *
26052129 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGGC
1 AAGGATACCAAATAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * * *
26052184 AAAGATCCCATATAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCAAATAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* *
26052237 AAGGATACCAAATAAGACCATGTCAAGACATGGCAATGGGAAGTT
1 AAGGATACCAAATAAGACCATGCCAAGACATGGCAATGGTAAGTT
26052282 AAAAAGGAAA
Statistics
Matches: 121, Mismatches: 30, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
53 45 0.37
54 37 0.31
55 39 0.32
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.19
Consensus pattern (53 bp):
AAGGATACCAAATAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:26058357 original size:25 final size:25
Alignment explanation
Indices: 26058323--26058374 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
26058313 TTGAGATAGA
26058323 AAAGTATATTCCGATTAATTTTTAT
1 AAAGTATATTCCGATTAATTTTTAT
*
26058348 AAAGTATATTCGGATTAATTTTTAT
1 AAAGTATATTCCGATTAATTTTTAT
26058373 AA
1 AA
26058375 TTTACCTAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.38, C:0.06, G:0.10, T:0.46
Consensus pattern (25 bp):
AAAGTATATTCCGATTAATTTTTAT
Found at i:26059686 original size:53 final size:53
Alignment explanation
Indices: 26059566--26059710 Score: 155
Period size: 53 Copynumber: 2.7 Consensus size: 53
26059556 GTAAGGAAAT
** * * * * *
26059566 CATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGACAAAGATCC
1 CATGTAAGACCATGTCAAGACATGAAAATGGT-AAGTTC-ATAAGACAAAGATAC
* * * * * *
26059621 CATGTAAGACCATGTTAAGGCATGGAAATGGTGAGTTCATAAGGCAAGGATAC
1 CATGTAAGACCATGTCAAGACATGAAAATGGTAAGTTCATAAGACAAAGATAC
26059674 CATGTAAGACCATGTCAAGACATGAAAATGGTAAGTT
1 CATGTAAGACCATGTCAAGACATGAAAATGGTAAGTT
26059711 TAAAAAGGAA
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
53 45 0.60
54 3 0.04
55 27 0.36
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (53 bp):
CATGTAAGACCATGTCAAGACATGAAAATGGTAAGTTCATAAGACAAAGATAC
Found at i:26065335 original size:103 final size:103
Alignment explanation
Indices: 26065204--26065509 Score: 343
Period size: 103 Copynumber: 3.0 Consensus size: 103
26065194 CAGAAATCTG
* * *
26065204 TACCTAAGTTATTTGAGTTAG-TTGAGTTAAGCTTGCAACTCTGAAATAGCTCGCAGACCTACGT
1 TACCTAAGTTATTTGAGTTAGCTT-AGTTAAGCTCGCAACTCTGAAATAGCTCGCGGACCTACAT
* * * *
26065268 TCCTAGCTAAGGTTTAAAGGTCAGCTGAGTTAAGCTTG-
65 TCCTAGCTGATGTTTAAAGGTTAGCTGAGTTAAGCTCGC
* ** * * * *
26065306 TAACCTAAGTTATTTGAGTTAGCTTAGTTAAGATCGCAACTCCAAAATGGCTCGTGGACTTACCT
1 T-ACCTAAGTTATTTGAGTTAGCTTAGTTAAGCTCGCAACTCTGAAATAGCTCGCGGACCTACAT
* *
26065371 TCCTAGTTGATGTTTAAAGGTTAGCTGAGTTAAACTCGC
65 TCCTAGCTGATGTTTAAAGGTTAGCTGAGTTAAGCTCGC
* * *
26065410 TA-CTAAAATTATTTGAGTTAGCTAAGTTAAGCTCACAACTCTGAAATAGC-CTGCGGACCTACA
1 TACCT-AAGTTATTTGAGTTAGCTTAGTTAAGCTCGCAACTCTGAAATAGCTC-GCGGACCTACA
* *
26065473 TTCCCTA-CTGATGTTTAAAGGTTAGTTAAGTTAAGCT
64 TT-CCTAGCTGATGTTTAAAGGTTAGCTGAGTTAAGCT
26065510 AGCAACTTAA
Statistics
Matches: 169, Mismatches: 29, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
102 4 0.02
103 158 0.93
104 7 0.04
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (103 bp):
TACCTAAGTTATTTGAGTTAGCTTAGTTAAGCTCGCAACTCTGAAATAGCTCGCGGACCTACATT
CCTAGCTGATGTTTAAAGGTTAGCTGAGTTAAGCTCGC
Found at i:26066206 original size:33 final size:33
Alignment explanation
Indices: 26066162--26066230 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
26066152 GCAATCGCAA
26066162 CCTTATATTCTTCAGCCATTTT-CATCACAGTGG
1 CCTTATATTCTTCAGCCATTTTCCAT-ACAGTGG
* *
26066195 CCTTATGTTCTTCAGCCATTTTCCATATAGTGG
1 CCTTATATTCTTCAGCCATTTTCCATACAGTGG
26066228 CCT
1 CCT
26066231 CTACAATGTC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 30 0.91
34 3 0.09
ACGTcount: A:0.19, C:0.28, G:0.13, T:0.41
Consensus pattern (33 bp):
CCTTATATTCTTCAGCCATTTTCCATACAGTGG
Found at i:26067608 original size:40 final size:40
Alignment explanation
Indices: 26067516--26067609 Score: 116
Period size: 40 Copynumber: 2.4 Consensus size: 40
26067506 GGTTATTTGT
* * *
26067516 GGCACTTAGTGTACGATTCGACATAGCTTCGACTATATAT
1 GGCACTTAGTGTGCGATTCAACATAGCTTCGACTATATAC
* * * *
26067556 GGCACTTAGTGTGCGATTTAAGATAGCTTCGGCTATGTAC
1 GGCACTTAGTGTGCGATTCAACATAGCTTCGACTATATAC
*
26067596 GTCACTTAGTGTGC
1 GGCACTTAGTGTGC
26067610 AAGACATTGA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.33
Consensus pattern (40 bp):
GGCACTTAGTGTGCGATTCAACATAGCTTCGACTATATAC
Found at i:26070154 original size:42 final size:42
Alignment explanation
Indices: 26070020--26070155 Score: 148
Period size: 43 Copynumber: 3.2 Consensus size: 42
26070010 AGATTTTGTA
** * *
26070020 TAAGACCATATCT-GGATATGGCATCAGCATGCGATTTCGTG
1 TAAGACCATATCTGGGATATGGCATCAAAATGAGACTTCGTG
* * * * *
26070061 TAAGACCACATCTGGGACATGGCTTCAAAAATGGGACTTCGTA
1 TAAGACCATATCTGGGATATGGCATC-AAAATGAGACTTCGTG
* * *
26070104 TAAGACCATATCTGGGATATGACATCAATATGAGACATCGTG
1 TAAGACCATATCTGGGATATGGCATCAAAATGAGACTTCGTG
26070146 TAAGACCATA
1 TAAGACCATA
26070156 GGTGGGCTAT
Statistics
Matches: 77, Mismatches: 16, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
41 12 0.16
42 32 0.42
43 33 0.43
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCAAAATGAGACTTCGTG
Found at i:26081847 original size:34 final size:34
Alignment explanation
Indices: 26081804--26081874 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
26081794 TTGATTGGTA
26081804 TTTATGCAAGTTTTTTATGTCGGTATCTGGAATG
1 TTTATGCAAGTTTTTTATGTCGGTATCTGGAATG
26081838 TTTATGCAAGTTTTTTATGTCGGTATCTGGAATG
1 TTTATGCAAGTTTTTTATGTCGGTATCTGGAATG
26081872 TTT
1 TTT
26081875 TCTCCACCCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.20, C:0.08, G:0.23, T:0.49
Consensus pattern (34 bp):
TTTATGCAAGTTTTTTATGTCGGTATCTGGAATG
Found at i:26088519 original size:58 final size:58
Alignment explanation
Indices: 26088450--26088561 Score: 188
Period size: 58 Copynumber: 1.9 Consensus size: 58
26088440 TGGTATCTAA
* * *
26088450 GATGTAAGCCAAATATGCCTTGTAACCTTTTTAGACACATTTTTGAGCTGACAAAGCT
1 GATGTAAGCCAAATATGCCTCGTAACCTTTCTAGACACATTTCTGAGCTGACAAAGCT
*
26088508 GATGTAAGCCAAATATGCCTCGTAACCTTTCTGGACACATTTCTGAGCTGACAA
1 GATGTAAGCCAAATATGCCTCGTAACCTTTCTAGACACATTTCTGAGCTGACAA
26088562 TACTAAAATA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 50 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (58 bp):
GATGTAAGCCAAATATGCCTCGTAACCTTTCTAGACACATTTCTGAGCTGACAAAGCT
Found at i:26096252 original size:186 final size:185
Alignment explanation
Indices: 26095939--26096299 Score: 686
Period size: 186 Copynumber: 1.9 Consensus size: 185
26095929 AGTGTATTCG
26095939 GCTTAGGGCATAAAGGATATGAAAAATTTGGTATTTATTTTTGATTGTTGTGTATGACCATGGAT
1 GCTTAGGGCATAAAGGATATGAAAAATTTGGTATTTATTTTTGATTGTTGTGTATGACCATGGAT
26096004 AATTGGCTGCACAAATATTATAAATACATAATGTATGTTAAATTTATTAAGCTACAAAACATTAT
66 AATTGGCTGCACAAATATTATAAATACATAATGTATGTTAAATTTATTAAGCTACAAAACATTAT
26096069 ACATGATCGGCCAAAGTAAATTATTTGAGTAAAGTATATCTTGATCGGCCAAGGT
131 ACATGATCGGCCAAAGTAAATTATTTGAGTAAAGTATATCTTGATCGGCCAAGGT
26096124 GCTTAGGGCATAAAGGATATGAAAAATTTGGTATTTATTTTTGATTGTATGTGTATGACCATGGA
1 GCTTAGGGCATAAAGGATATGAAAAATTTGGTATTTATTTTTGATTGT-TGTGTATGACCATGGA
* *
26096189 TAATTGGCTGCACAAATATTATTAATACATAATGTATGTTAAATTTATTAAGTTACAAAACATTA
65 TAATTGGCTGCACAAATATTATAAATACATAATGTATGTTAAATTTATTAAGCTACAAAACATTA
*
26096254 TACATGATCGGCCAAGGTAAATTATTTGAGTAAAGTATATCTTGAT
130 TACATGATCGGCCAAAGTAAATTATTTGAGTAAAGTATATCTTGAT
26096300 GGTACATTTC
Statistics
Matches: 172, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
185 48 0.28
186 124 0.72
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.36
Consensus pattern (185 bp):
GCTTAGGGCATAAAGGATATGAAAAATTTGGTATTTATTTTTGATTGTTGTGTATGACCATGGAT
AATTGGCTGCACAAATATTATAAATACATAATGTATGTTAAATTTATTAAGCTACAAAACATTAT
ACATGATCGGCCAAAGTAAATTATTTGAGTAAAGTATATCTTGATCGGCCAAGGT
Found at i:26097330 original size:48 final size:48
Alignment explanation
Indices: 26097268--26097500 Score: 385
Period size: 48 Copynumber: 4.9 Consensus size: 48
26097258 TATATATGTG
* *
26097268 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGAATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* **
26097316 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGCCTA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
26097364 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
26097412 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
26097460 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
26097501 GCGTGTATAT
Statistics
Matches: 172, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 172 1.00
ACGTcount: A:0.36, C:0.07, G:0.28, T:0.29
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:26097743 original size:37 final size:37
Alignment explanation
Indices: 26097641--26097750 Score: 184
Period size: 37 Copynumber: 3.0 Consensus size: 37
26097631 GGAAATATAT
*
26097641 TCCGGGTAAGACCCGATGACTACGTGTGAAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
26097678 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
26097715 TCCGGGTAAGACCCGATAACTACGTGTGGGGATTAT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
26097751 TCGAGCTAAA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:26103323 original size:43 final size:43
Alignment explanation
Indices: 26103270--26103355 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
26103260 TACTATTTCA
*
26103270 ATCCTCAGCTTAGTTTTAATGATTTGTCTATTTATAAATTATC
1 ATCCTCAGCTTAGTTTAAATGATTTGTCTATTTATAAATTATC
*
26103313 ATCCTTAGCTTAGTTTAAATGATTTGTCTATTTATAAATTATC
1 ATCCTCAGCTTAGTTTAAATGATTTGTCTATTTATAAATTATC
26103356 CTTCCAATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.29, C:0.13, G:0.09, T:0.49
Consensus pattern (43 bp):
ATCCTCAGCTTAGTTTAAATGATTTGTCTATTTATAAATTATC
Found at i:26109966 original size:46 final size:46
Alignment explanation
Indices: 26109916--26110091 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
26109906 TGGTTGAGCA
26109916 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
26109962 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
26110007 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
26110055 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26110092 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:26110072 original size:93 final size:93
Alignment explanation
Indices: 26109913--26110084 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
26109903 GGATGGTTGA
* *
26109913 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
26109978 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
26110006 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
26110071 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
26110085 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:26118723 original size:46 final size:46
Alignment explanation
Indices: 26118673--26118848 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
26118663 TGGTTGAGCA
26118673 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
26118719 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
26118764 CATCCAAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
26118812 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26118849 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:26118829 original size:93 final size:93
Alignment explanation
Indices: 26118670--26118841 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
26118660 GGATGGTTGA
* * *
26118670 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
26118735 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
26118763 GCATCCAAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
26118828 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
26118842 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:26125571 original size:29 final size:30
Alignment explanation
Indices: 26125515--26125571 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
26125505 CACGGCCAGG
*
26125515 CACACGGGCGTGTGACTAGGCCGTGTGAGC
1 CACACGGGCGTGTGACTAGGCCATGTGAGC
* * *
26125545 CACATGGGCGTGTGGC-AGGCTATGTGA
1 CACACGGGCGTGTGACTAGGCCATGTGA
26125572 TCGGCTATGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 9 0.39
30 14 0.61
ACGTcount: A:0.18, C:0.23, G:0.40, T:0.19
Consensus pattern (30 bp):
CACACGGGCGTGTGACTAGGCCATGTGAGC
Found at i:26138749 original size:27 final size:27
Alignment explanation
Indices: 26138719--26138896 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26138709 ATATTGAGTC
* * * *
26138719 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
26138746 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26138773 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
26138801 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
26138828 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
26138855 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26138882 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26138897 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:26138858 original size:82 final size:81
Alignment explanation
Indices: 26138740--26138895 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26138730 TGCTATATAA
* *
26138740 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26138805 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26138822 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26138886 CACTTAGTGC
65 CACTTAGTGC
26138896 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26147073 original size:48 final size:47
Alignment explanation
Indices: 26146943--26147110 Score: 171
Period size: 47 Copynumber: 3.6 Consensus size: 47
26146933 CTCTTAGCCA
* *
26146943 ATGCATGTCCCAGACACGTCTTACACTGGCTA-TCATCATCGAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATCATCGACGCCG
* * * *
26146990 ATGCATGTCTCAGACATGTCTTACACTTGCACTCATC-TCTACGCTG
1 ATGCATGTCCCAGACATGTCTTACACTGGCACTCATCATCGACGCCG
* **
26147036 ATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAAT-GTGGCCG
1 ATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATCATCGACGCCG
* * * *
26147084 ATTCATGTCCTAGATATTTCTTACACT
1 ATGCATGTCCCAGACATGTCTTACACT
26147111 AGCATACAAG
Statistics
Matches: 100, Mismatches: 17, Indels: 9
0.79 0.13 0.07
Matches are distributed among these distances:
46 19 0.19
47 57 0.57
48 23 0.23
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (47 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCACTCATCATCGACGCCG
Found at i:26153313 original size:102 final size:102
Alignment explanation
Indices: 26153137--26153617 Score: 890
Period size: 102 Copynumber: 4.7 Consensus size: 102
26153127 ATCTAGCAGG
* * *
26153137 ATTCTTGCTACCAACCCCAACTCCAACATTCTTCTAAGGTCTTCCACTAAAATTGGTGCCACTTG
1 ATTCTTACTACCAACCCCAACTCCAACATTCTTCTGAGGTCTTCCATTAAAATTGGTGCCACTTG
26153202 GCCTTGTATCAAACCTTACGGTAGTGTCTCTCGTCAC
66 GCCTTGTATCAAACCTTACGGTAGTGTCTCTCGTCAC
*
26153239 ATTCTTACTACCAACCCCACCTCCAACATTCTTCTGAGGTCTTCCATTAAAATTGGTGCCACTTG
1 ATTCTTACTACCAACCCCAACTCCAACATTCTTCTGAGGTCTTCCATTAAAATTGGTGCCACTTG
26153304 GCCTTGTATCAAACCTTACGGTAGTGTCTCTCGTCAC
66 GCCTTGTATCAAACCTTACGGTAGTGTCTCTCGTCAC
26153341 ATTCTTACTACCAACCCCAACTCCAACATTCTTCTGAGGTCTTCCATTAAAATTGGTGCCACTTG
1 ATTCTTACTACCAACCCCAACTCCAACATTCTTCTGAGGTCTTCCATTAAAATTGGTGCCACTTG
26153406 GCCTTGTATCAAACCTTACGGTAGTGTCTCTCGTCAC
66 GCCTTGTATCAAACCTTACGGTAGTGTCTCTCGTCAC
*
26153443 ATTCTTACTACCAACCCCACCTCCAACATTCTTCTGAGGTCTTCCATTAAAATTGGTGCCACTTG
1 ATTCTTACTACCAACCCCAACTCCAACATTCTTCTGAGGTCTTCCATTAAAATTGGTGCCACTTG
26153508 GCCTTGTATCAAACCTTACGGTAGTGTCTCTCGTCAC
66 GCCTTGTATCAAACCTTACGGTAGTGTCTCTCGTCAC
* * *
26153545 ATTCTTGCTACCAACCCTAACTCCAACATTCTTTTGAGGTCTTCCATTAAAATTGGTGCCACTTG
1 ATTCTTACTACCAACCCCAACTCCAACATTCTTCTGAGGTCTTCCATTAAAATTGGTGCCACTTG
26153610 GCCTTGTA
66 GCCTTGTA
26153618 CTCTGAAATT
Statistics
Matches: 369, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
102 369 1.00
ACGTcount: A:0.23, C:0.31, G:0.14, T:0.33
Consensus pattern (102 bp):
ATTCTTACTACCAACCCCAACTCCAACATTCTTCTGAGGTCTTCCATTAAAATTGGTGCCACTTG
GCCTTGTATCAAACCTTACGGTAGTGTCTCTCGTCAC
Found at i:26162477 original size:152 final size:146
Alignment explanation
Indices: 26162093--26162574 Score: 499
Period size: 151 Copynumber: 3.2 Consensus size: 146
26162083 TTTTAATAAA
* * * * *
26162093 AAAATGAGAAAGTTTAGATTTTGGAAAAATAAATGTATATTTTTTTAGTTAATTTAAAGGAAAGT
1 AAAATGAG-AAGTTTAGATTTTGAAAAAAAAAATATGT-TTTTTTTAGTTATTTTAAAGGAAAGT
* ** * * * *
26162158 TTAAATTTTTAAAACAAATTTTTGATTTTTTTTTTCAACT-CTTTTAAAGTCAAAGCTTTAATCT
64 TTAAATTTTTAAAACAAAGTTTTGA--TTTTTTTT-AACTAC-TCCAAAATAAAAACTTTAATAT
*
26162222 TTAAGAAAAATAGTATTTTTTT
125 TTAAGAAAAATAATATTTTTTT
**
26162244 AAAAAAAGACAGTTTAGATTTTGAAAAAATAAAAATATG-TTTTTTTAGTTATTTTAAAGGAAAG
1 AAAATGAGA-AGTTTAGATTTTG-AAAAA-AAAAATATGTTTTTTTTAGTTATTTTAAAGGAAAG
* * *
26162308 CTTAAATTTTTAAAACAAAGATTTGATTTTTTTTAACTACTCCAAAATAAAAACTTTATTATTTA
63 TTTAAATTTTTAAAACAAAGTTTTGATTTTTTTTAACTACTCCAAAATAAAAACTTTAATATTTA
26162373 AGAAAGTAATAATAATTTTTTT
128 AGAAA--AATAAT-ATTTTTTT
* *
26162395 AAAATGAGAATGTTTAGATTTTGAAAAAGAAAAATCTGTTTTTTTTAAGTCATTTTAAAGGAAAG
1 AAAATGAGAA-GTTTAGATTTTGAAAAA-AAAAATATGTTTTTTTT-AGTTATTTTAAAGGAAAG
* * ** * *
26162460 TTTAAATTTTTAAAACAAAGTTTTGATTTTTTTTAACTATTCCGAAAT-AAAGTTTTGATTTTTA
63 TTTAAATTTTTAAAACAAAGTTTTGATTTTTTTTAACTACTCCAAAATAAAAACTTTAATATTTA
* *
26162524 AGAAAAGTAATTATTCTTTCT
128 AGAAAAATAA-TATT-TTTTT
* *
26162545 -AAA-GA-AAATTTTGATTTTGAAAAAAAAAAT
1 AAAATGAGAAGTTTAGATTTTGAAAAAAAAAAT
26162575 CCACACCGAA
Statistics
Matches: 283, Mismatches: 36, Indels: 30
0.81 0.10 0.09
Matches are distributed among these distances:
145 6 0.02
146 15 0.05
147 2 0.01
148 29 0.10
149 19 0.07
150 25 0.09
151 116 0.41
152 65 0.23
153 6 0.02
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.43
Consensus pattern (146 bp):
AAAATGAGAAGTTTAGATTTTGAAAAAAAAAATATGTTTTTTTTAGTTATTTTAAAGGAAAGTTT
AAATTTTTAAAACAAAGTTTTGATTTTTTTTAACTACTCCAAAATAAAAACTTTAATATTTAAGA
AAAATAATATTTTTTT
Found at i:26167490 original size:46 final size:47
Alignment explanation
Indices: 26167341--26167598 Score: 178
Period size: 46 Copynumber: 5.5 Consensus size: 47
26167331 TTTGTGAGCT
* * * * *
26167341 AGTGTAAGA-CATGTATGGGACATGAATCAGCCAC-ATTAAG-AGAGCC
1 AGTGTAAGACCATGTCTGGGACATGAATCGGCCTCGA-GACGTA-AGCC
* * * * *
26167387 AGTGTAAGACCATGTCTGGTACATGGCATCGGCATTGAGAC-TAAAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GAATCGGCCTCGAGACGT-AAGCC
* *
26167435 ACTGTAAGA-CATGTCTGGGACATGAATTGGCCTCGAGACGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGAATCGGCCTCGAGACGTAAGCC
* * *
26167481 AGTGTAAGA-CATGTCTGGGACATGTATCGG-CTACGAGATG-ATAGTC
1 AGTGTAAGACCATGTCTGGGACATGAATCGGCCT-CGAGACGTA-AGCC
* ** * *
26167527 AGTGTAAGACCATGTCTGGGACATGGCATC-TACTTGGGA--TAGGAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GAATCGGCCTCGAGACGTA--AGCC
26167574 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
26167599 GCATCGGTAC
Statistics
Matches: 171, Mismatches: 28, Indels: 26
0.76 0.12 0.12
Matches are distributed among these distances:
45 3 0.02
46 72 0.42
47 70 0.41
48 24 0.14
49 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGAATCGGCCTCGAGACGTAAGCC
Done.