Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56482370
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1659275 characters in sequence are not A, C, G, or T
File 79 of 172
Found at i:26167593 original size:140 final size:140
Alignment explanation
Indices: 26167341--26167598 Score: 333
Period size: 140 Copynumber: 1.8 Consensus size: 140
26167331 TTTGTGAGCT
*
26167341 AGTGTAAGACATGTATGGGACATGAATCAGCCACATTAAGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTATGGGACATGAATCAGCCACATGAAGAGAGCCAGTGTAAGACCATGTCTGG
* * *
26167406 TACATGGCATCGGCATTGAGACTAAAGCTACTGTAAGACATGTCTGGGACATGAATTGGCCTCGA
66 GACATGGCATCGACATTGAGACTAAAGCCACTGTAAGACATGTCTGGGACATGAATTGGCCTCGA
26167471 GACGTAAGCC
131 GACGTAAGCC
* * * * * * *
26167481 AGTGTAAGACATGTCTGGGACATGTATCGGCTACGA-GATGATAGTCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTATGGGACATGAATCAGCCAC-ATGAAGAGAGCCAGTGTAAGACCATGTCTG
* * * *
26167545 GGACATGGCATCTAC-TTGGGA-TAGGAGCCAGTGTAAGACCATGTCTGGGACATG
65 GGACATGGCATCGACATTGAGACTA-AAGCCACTGTAAGA-CATGTCTGGGACATG
26167599 GCATCGGTAC
Statistics
Matches: 100, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
138 2 0.02
139 16 0.16
140 81 0.81
141 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.23
Consensus pattern (140 bp):
AGTGTAAGACATGTATGGGACATGAATCAGCCACATGAAGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGACATTGAGACTAAAGCCACTGTAAGACATGTCTGGGACATGAATTGGCCTCGA
GACGTAAGCC
Found at i:26173280 original size:46 final size:46
Alignment explanation
Indices: 26173183--26173343 Score: 159
Period size: 46 Copynumber: 3.5 Consensus size: 46
26173173 TGTGAGCTAA
* * * * * *
26173183 TGTAAGACATGTCTGGGACATGCATCGACCAC-ATTATGAGAGCTACG
1 TGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATCATAGCCA-G
*
26173230 -GTAAGACATGTTTGGGACATGCATCGGCCT-CGAGA-CATAAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATCAT-AGCCAG
* * *
26173275 TGTAAGACATGCCTGGGACATGCATCGGCTACGAGATGATAGTCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCTACGAGATCATAGCCAG
26173321 TGTAAGACCATGTCTGGGACATG
1 TGTAAGA-CATGTCTGGGACATG
26173344 GTATCAACAC
Statistics
Matches: 95, Mismatches: 12, Indels: 14
0.79 0.10 0.12
Matches are distributed among these distances:
45 4 0.04
46 73 0.77
47 18 0.19
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGCTACGAGATCATAGCCAG
Found at i:26176044 original size:27 final size:27
Alignment explanation
Indices: 26176010--26176086 Score: 91
Period size: 27 Copynumber: 2.9 Consensus size: 27
26176000 ACCTAATCCT
* *
26176010 CGTATTTACCATCTCATTGGACTAACC
1 CGTATTTAACATCCCATTGGACTAACC
* * *
26176037 CGTGTTTAACGTCCCATTGGACTATCC
1 CGTATTTAACATCCCATTGGACTAACC
* *
26176064 CGTATTTAATATCCCATCGGACT
1 CGTATTTAACATCCCATTGGACT
26176087 GTCTTTGATG
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.23, C:0.29, G:0.14, T:0.34
Consensus pattern (27 bp):
CGTATTTAACATCCCATTGGACTAACC
Found at i:26181499 original size:17 final size:18
Alignment explanation
Indices: 26181477--26181510 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26181467 TTTAGCCGTG
26181477 TGGG-CCACACGAGCATA
1 TGGGCCCACACGAGCATA
*
26181494 TGGGCCCACACGGGCAT
1 TGGGCCCACACGAGCAT
26181511 GTGAGTCCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.24, C:0.32, G:0.32, T:0.12
Consensus pattern (18 bp):
TGGGCCCACACGAGCATA
Found at i:26181932 original size:40 final size:40
Alignment explanation
Indices: 26181859--26181934 Score: 98
Period size: 40 Copynumber: 1.9 Consensus size: 40
26181849 ACGGTACCTT
* * *
26181859 TTGGTATGTAGGGTTGGATGGGTTGATTATATCCCCATAC
1 TTGGTATGTAGGGTTGGACGGGTCGATCATATCCCCATAC
* * *
26181899 TTGGTTTGTAGGGTTGGGCGGGTCGATCCTATCCCC
1 TTGGTATGTAGGGTTGGACGGGTCGATCATATCCCC
26181935 GCATGGTGTG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 30 1.00
ACGTcount: A:0.14, C:0.17, G:0.33, T:0.36
Consensus pattern (40 bp):
TTGGTATGTAGGGTTGGACGGGTCGATCATATCCCCATAC
Found at i:26187756 original size:15 final size:16
Alignment explanation
Indices: 26187719--26187762 Score: 63
Period size: 15 Copynumber: 2.8 Consensus size: 16
26187709 TAATTTGAGC
*
26187719 CGTGTGGGCCACACGGT
1 CGTGTGAGCC-CACGGT
26187736 CGTGTGAGCCCACGG-
1 CGTGTGAGCCCACGGT
26187751 CGTGTGAGCCCA
1 CGTGTGAGCCCA
26187763 ATTTTCCTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 12 0.46
16 5 0.19
17 9 0.35
ACGTcount: A:0.14, C:0.32, G:0.39, T:0.16
Consensus pattern (16 bp):
CGTGTGAGCCCACGGT
Found at i:26194580 original size:258 final size:258
Alignment explanation
Indices: 26194123--26194617 Score: 990
Period size: 258 Copynumber: 1.9 Consensus size: 258
26194113 TAATGATATT
26194123 TTATTATTTTATTTAGTATAAATATATATGTGTGGAGAGAAAGATGGAACACACACACCAACCAT
1 TTATTATTTTATTTAGTATAAATATATATGTGTGGAGAGAAAGATGGAACACACACACCAACCAT
26194188 CATCTTCTTCCATGCACCCCACTTTAGAAAGAAGAGAAGAAAGAAATTTTCTTTTCTTTACAATT
66 CATCTTCTTCCATGCACCCCACTTTAGAAAGAAGAGAAGAAAGAAATTTTCTTTTCTTTACAATT
26194253 TAGTCCTTCCACCAAAAATTCGCCATTTTCACCTAGAAATTAAAAGAATTTCTATGTTTACCAGG
131 TAGTCCTTCCACCAAAAATTCGCCATTTTCACCTAGAAATTAAAAGAATTTCTATGTTTACCAGG
26194318 AGAGAAAATTAATAAAGAGACTACGGGGAGCTAAAATATCAATAATGATATTTTATTATTTTA
196 AGAGAAAATTAATAAAGAGACTACGGGGAGCTAAAATATCAATAATGATATTTTATTATTTTA
26194381 TTATTATTTTATTTAGTATAAATATATATGTGTGGAGAGAAAGATGGAACACACACACCAACCAT
1 TTATTATTTTATTTAGTATAAATATATATGTGTGGAGAGAAAGATGGAACACACACACCAACCAT
26194446 CATCTTCTTCCATGCACCCCACTTTAGAAAGAAGAGAAGAAAGAAATTTTCTTTTCTTTACAATT
66 CATCTTCTTCCATGCACCCCACTTTAGAAAGAAGAGAAGAAAGAAATTTTCTTTTCTTTACAATT
26194511 TAGTCCTTCCACCAAAAATTCGCCATTTTCACCTAGAAATTAAAAGAATTTCTATGTTTACCAGG
131 TAGTCCTTCCACCAAAAATTCGCCATTTTCACCTAGAAATTAAAAGAATTTCTATGTTTACCAGG
26194576 AGAGAAAATTAATAAAGAGACTACGGGGAGCTAAAATATCAA
196 AGAGAAAATTAATAAAGAGACTACGGGGAGCTAAAATATCAA
26194618 GTTAGATTCA
Statistics
Matches: 237, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
258 237 1.00
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.31
Consensus pattern (258 bp):
TTATTATTTTATTTAGTATAAATATATATGTGTGGAGAGAAAGATGGAACACACACACCAACCAT
CATCTTCTTCCATGCACCCCACTTTAGAAAGAAGAGAAGAAAGAAATTTTCTTTTCTTTACAATT
TAGTCCTTCCACCAAAAATTCGCCATTTTCACCTAGAAATTAAAAGAATTTCTATGTTTACCAGG
AGAGAAAATTAATAAAGAGACTACGGGGAGCTAAAATATCAATAATGATATTTTATTATTTTA
Found at i:26196542 original size:46 final size:46
Alignment explanation
Indices: 26196487--26196897 Score: 517
Period size: 46 Copynumber: 9.0 Consensus size: 46
26196477 GCTTTCTGAA
* *
26196487 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
26196533 A-GAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
26196579 ATAAAAT--G-AAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* **
26196622 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
26196668 ATGAAATGAATAAGACCATGGCTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
26196714 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATAAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
26196760 AGGGAAATGAATAAGACCATGGTTGAAAGATACCATAGCAACATGAC
1 A-TGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
26196807 AGGGAAATGAATAAGATCATGGTTAAAAGATACCATGGCAACATGAT
1 A-TGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
26196854 A-GAAAACGAGTAAGACCATAGTCGAAAGATACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
26196898 TTGAAGATAA
Statistics
Matches: 329, Mismatches: 29, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
43 40 0.12
44 1 0.00
45 3 0.01
46 199 0.60
47 86 0.26
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.20
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:26196649 original size:89 final size:90
Alignment explanation
Indices: 26196498--26196897 Score: 482
Period size: 89 Copynumber: 4.4 Consensus size: 90
26196488 TGAAATGTGT
* **
26196498 AAGACCATGGTTGAAAGATACCATGGCAACATGATA-GAAAATGTGTAAGACCATGGTTGAAAGA
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAATAAGACCATGGTTGAAAGA
*
26196562 TACCATGGCAACATGACATAAAATG-
65 TACCATGGCAACATGACAGAAAATGA
* **
26196587 AAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGAT
**
26196652 ACCATGGCAATGTGACATG-AAATGAA
66 ACCATGGCAACATGACA-GAAAATG-A
* *
26196678 TAAGACCATGGCTGAAAGATACCATGGCAACGTGACATGAAATGAATAAGACCATGGTTGAAAGA
1 -AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
* *
26196743 TACCATGGCAACATAACAGGGAAATGAA
65 TACCATGGCAACATGACA-GAAAATG-A
* * * *
26196771 TAAGACCATGGTTGAAAGATACCATAGCAACATGACAGGGAAATGAATAAGATCATGGTTAAAAG
1 -AAGACCATGGTTGAAAGATACCATGGCAACATGACA-TGAAATGAATAAGACCATGGTTGAAAG
* *
26196836 ATACCATGGCAACATGATAGAAAACGA
64 ATACCATGGCAACATGACAGAAAATGA
* * * *
26196863 GTAAGACCATAGTCGAAAGATACTATGGCATCATG
1 --AAGACCATGGTTGAAAGATACCATGGCAACATG
26196898 TTGAAGATAA
Statistics
Matches: 276, Mismatches: 27, Indels: 12
0.88 0.09 0.04
Matches are distributed among these distances:
89 83 0.30
90 1 0.00
92 76 0.28
93 75 0.27
94 41 0.15
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.20
Consensus pattern (90 bp):
AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGAT
ACCATGGCAACATGACAGAAAATGA
Found at i:26197022 original size:13 final size:13
Alignment explanation
Indices: 26196980--26197023 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
26196970 ACCTGATGAC
26196980 AAATGGTTATATG
1 AAATGGTTATATG
* **
26196993 AATTGGTTATACA
1 AAATGGTTATATG
*
26197006 AAATGGTTATGTG
1 AAATGGTTATATG
26197019 AAATG
1 AAATG
26197024 TTTACAGGAA
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.39, C:0.02, G:0.23, T:0.36
Consensus pattern (13 bp):
AAATGGTTATATG
Found at i:26198009 original size:26 final size:26
Alignment explanation
Indices: 26197942--26198016 Score: 104
Period size: 22 Copynumber: 3.0 Consensus size: 26
26197932 TGAATTTTGA
*
26197942 AATACATTACAAGTATTAAAGATAAG
1 AATATATTACAAGTATTAAAGATAAG
*
26197968 AATATA-TA-AA-T-GTAAAGATAAG
1 AATATATTACAAGTATTAAAGATAAG
26197990 AATATATTACAAGTATTAAAGATAAG
1 AATATATTACAAGTATTAAAGATAAG
26198016 A
1 A
26198017 CCATGGTTGA
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
22 16 0.38
23 3 0.07
24 4 0.10
25 3 0.07
26 16 0.38
ACGTcount: A:0.56, C:0.04, G:0.12, T:0.28
Consensus pattern (26 bp):
AATATATTACAAGTATTAAAGATAAG
Found at i:26198092 original size:24 final size:24
Alignment explanation
Indices: 26198064--26198138 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
26198054 TGAATAAGAC
26198064 CATGGTTGAAAGATACCATGGCAA
1 CATGGTTGAAAGATACCATGGCAA
** * *
26198088 CATGGCGGGAAA-ATGA--ATAAG-AC
1 CATGG-TTGAAAGAT-ACCAT-GGCAA
26198111 CATGGTTGAAAGATACCATGGCAA
1 CATGGTTGAAAGATACCATGGCAA
26198135 CATG
1 CATG
26198139 ACGGGCAAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 11 0.31
24 15 0.42
25 5 0.14
ACGTcount: A:0.39, C:0.16, G:0.27, T:0.19
Consensus pattern (24 bp):
CATGGTTGAAAGATACCATGGCAA
Found at i:26198120 original size:47 final size:47
Alignment explanation
Indices: 26198011--26198231 Score: 329
Period size: 47 Copynumber: 4.7 Consensus size: 47
26198001 AGTATTAAAG
* **
26198011 ATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATG-AAATGA
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGA
*
26198057 ATAAGACCATGGTTGAAAGATACCATGGCAACATGGCGGGAAAATGA
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGA
*
26198104 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGCAAATGA
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGA
* *
26198151 ATAAGACCATGGTTGAAACATACCATGGCAACATGAC-AGAAAATGA
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGA
* * * *
26198197 GTAAGACCATAGTTGAAAGATACTATGGCATCATG
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATG
26198232 TTGAAGATAA
Statistics
Matches: 160, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 73 0.46
47 87 0.54
ACGTcount: A:0.41, C:0.16, G:0.24, T:0.19
Consensus pattern (47 bp):
ATAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGA
Found at i:26198193 original size:93 final size:93
Alignment explanation
Indices: 26198011--26198231 Score: 336
Period size: 93 Copynumber: 2.4 Consensus size: 93
26198001 AGTATTAAAG
* * *
26198011 ATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAATAAGACCATGGTTGAAAG
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCATGGTTGAAAC
* *
26198076 ATACCATGGCAACATGGCGGGAAAATGA
66 ATACCATGGCAACATGACGAGAAAATGA
*
26198104 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGCAAATGAATAAGACCATGGTTGAAA
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGG-AAATGAATAAGACCATGGTTGAAA
26198169 CATACCATGGCAACATGAC-AGAAAATGA
65 CATACCATGGCAACATGACGAGAAAATGA
* * * *
26198197 GTAAGACCATAGTTGAAAGATACTATGGCATCATG
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATG
26198232 TTGAAGATAA
Statistics
Matches: 117, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
93 76 0.65
94 41 0.35
ACGTcount: A:0.41, C:0.16, G:0.24, T:0.19
Consensus pattern (93 bp):
ATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCATGGTTGAAAC
ATACCATGGCAACATGACGAGAAAATGA
Found at i:26198354 original size:26 final size:24
Alignment explanation
Indices: 26198314--26198409 Score: 66
Period size: 26 Copynumber: 3.7 Consensus size: 24
26198304 ACCAGATGAC
*
26198314 AAATGGTTATATGAATTGGTTATACA
1 AAATGGTTATATGAAAT-GTT-TACA
* *
26198340 AAATGGTTGTGTGAAATGTTTACAA
1 AAATGGTTATATGAAATGTTTAC-A
* *
26198365 AAATTGGTCATATGGAAATATATGTACA
1 AAA-TGGTTATAT-GAAATGT-T-TACA
* *
26198393 AAATAGTTGTATGAAAT
1 AAATGGTTATATGAAAT
26198410 AATTAAGAAG
Statistics
Matches: 55, Mismatches: 10, Indels: 10
0.73 0.13 0.13
Matches are distributed among these distances:
24 3 0.05
25 7 0.13
26 25 0.45
27 12 0.22
28 5 0.09
29 3 0.05
ACGTcount: A:0.41, C:0.04, G:0.20, T:0.35
Consensus pattern (24 bp):
AAATGGTTATATGAAATGTTTACA
Found at i:26199216 original size:36 final size:36
Alignment explanation
Indices: 26199167--26199235 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
26199157 ATGTAAGTCA
26199167 GTATTATGCCGAAAAGAGGGTGGTTCTGAGGACCCT
1 GTATTATGCCGAAAAGAGGGTGGTTCTGAGGACCCT
* *
26199203 GTATTGTGTCGAAAAGAGGGTGGTTCTGAGGAC
1 GTATTATGCCGAAAAGAGGGTGGTTCTGAGGAC
26199236 TGAAGAGAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.25, C:0.13, G:0.36, T:0.26
Consensus pattern (36 bp):
GTATTATGCCGAAAAGAGGGTGGTTCTGAGGACCCT
Found at i:26203806 original size:40 final size:40
Alignment explanation
Indices: 26203762--26203840 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 40
26203752 TTACAGTACC
* *
26203762 ACTTGGTGTGTATGGCTAGATGGGTCGATTTTATCCCCAT
1 ACTTGGTGTGTAGGGCTAGATAGGTCGATTTTATCCCCAT
* * *
26203802 ACTTGGTGTGTAGGGCTGGGTAGGTTGATTTTATCCCCA
1 ACTTGGTGTGTAGGGCTAGATAGGTCGATTTTATCCCCA
26203841 CATGGTGTGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.16, C:0.16, G:0.30, T:0.37
Consensus pattern (40 bp):
ACTTGGTGTGTAGGGCTAGATAGGTCGATTTTATCCCCAT
Found at i:26208523 original size:39 final size:39
Alignment explanation
Indices: 26208479--26208650 Score: 283
Period size: 39 Copynumber: 4.4 Consensus size: 39
26208469 ATATGCNGGG
*
26208479 CTAAGTCTCGAAGGCATTCGTGCTGGTGTTATATCCGGC
1 CTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGC
*
26208518 CTAAGTCCTGAAGGCATTCGTGCTGGTGTTATATCCGGC
1 CTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGC
26208557 CTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGAG-
1 CTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCG-GC
* * *
26208596 CTAAATCCCGAAGGCATTCGTACTGGTGTTATATCCGGG
1 CTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGC
26208635 CTAAGTCCCGAAGGCA
1 CTAAGTCCCGAAGGCA
26208651 ATTATGTTGG
Statistics
Matches: 125, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
38 1 0.01
39 123 0.98
40 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (39 bp):
CTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGC
Found at i:26216514 original size:39 final size:39
Alignment explanation
Indices: 26216470--26216650 Score: 299
Period size: 39 Copynumber: 4.6 Consensus size: 39
26216460 TGTGTGAGAT
*
26216470 TTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
26216509 TTATATCCGGCCTAAGTCCTGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
26216548 TTATATCCGGCCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
26216587 TTATATCCGAGCTAAATCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
26216626 TTATATCCGGGCTAAGTCTCGAAGG
1 TTATATCCGGGCTAAGTCCCGAAGG
26216651 TAATTATGTT
Statistics
Matches: 132, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 132 1.00
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:26228535 original size:40 final size:40
Alignment explanation
Indices: 26228480--26228732 Score: 352
Period size: 40 Copynumber: 6.3 Consensus size: 40
26228470 NNNNNNNNNN
*
26228480 CTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGG
1 CTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCCGGG
* * *
26228520 CTAAGTCTCGAAGGCATTTGTGCTAGTGACTATATCTGGG
1 CTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCCGGG
26228560 CTAAGTCCCGAAGGCATTTGTGCTA-TTGACTATATCCGGG
1 CTAAGTCCCGAAGGCATTTGTGCTAGTT-ACTATATCCGGG
**
26228600 CTAAG-CCCTGAAGGCATTTGTGCTAGAGACTATATCCGGG
1 CTAAGTCCC-GAAGGCATTTGTGCTAGTTACTATATCCGGG
*
26228640 CTAAGTCCCGAAGGCTTTTGTGCTA-TTGACTATATCCGGG
1 CTAAGTCCCGAAGGCATTTGTGCTAGTT-ACTATATCCGGG
* * *
26228680 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GG
1 CTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCCGGG
*
26228719 CTAAATCCCGAAGG
1 CTAAGTCCCGAAGG
26228733 TACTTGGGTT
Statistics
Matches: 189, Mismatches: 18, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
39 18 0.10
40 166 0.88
41 5 0.03
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
CTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCCGGG
Found at i:26233528 original size:13 final size:13
Alignment explanation
Indices: 26233510--26233534 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26233500 ATATTCTGCC
26233510 TAACATATATAAT
1 TAACATATATAAT
26233523 TAACATATATAA
1 TAACATATATAA
26233535 AAAAATATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (13 bp):
TAACATATATAAT
Found at i:26233784 original size:15 final size:15
Alignment explanation
Indices: 26233764--26233813 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
26233754 ATAGTACAAT
26233764 TATACAATTTTACTA
1 TATACAATTTTACTA
* * *
26233779 TATACATAGTATAAT-
1 TATACA-ATTTTACTA
26233794 TATACAATTTTACTA
1 TATACAATTTTACTA
26233809 TATAC
1 TATAC
26233814 CAAATCACAT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
14 5 0.19
15 17 0.63
16 5 0.19
ACGTcount: A:0.42, C:0.12, G:0.02, T:0.44
Consensus pattern (15 bp):
TATACAATTTTACTA
Found at i:26233786 original size:30 final size:30
Alignment explanation
Indices: 26233752--26233813 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
26233742 AACATTCAAG
26233752 ACATAGTACAATTATACAATTTTACTATAT
1 ACATAGTACAATTATACAATTTTACTATAT
*
26233782 ACATAGTATAATTATACAATTTTACTATAT
1 ACATAGTACAATTATACAATTTTACTATAT
26233812 AC
1 AC
26233814 CAAATCACAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.44, C:0.13, G:0.03, T:0.40
Consensus pattern (30 bp):
ACATAGTACAATTATACAATTTTACTATAT
Found at i:26235176 original size:31 final size:31
Alignment explanation
Indices: 26235133--26235248 Score: 171
Period size: 31 Copynumber: 3.8 Consensus size: 31
26235123 TCAATCTCAG
* *
26235133 CATAT-ACTGGGCCGAAGCCTTTACATTATC
1 CATATCACTGGGCCGAAGCCTTTTCATTATT
*
26235163 CATGTCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTTCATTATT
*
26235194 CATATCATTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTTCATTATT
* *
26235225 CATATCACTAGGCCGAAGCTTTTT
1 CATATCACTGGGCCGAAGCCTTTT
26235249 ACTGTAACAA
Statistics
Matches: 77, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
30 4 0.05
31 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.34
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATTATT
Found at i:26235483 original size:25 final size:26
Alignment explanation
Indices: 26235455--26235563 Score: 138
Period size: 26 Copynumber: 4.3 Consensus size: 26
26235445 CTGGAGGCCT
26235455 AGCCTCTTTT-GAT-AACTGGGGCAAA
1 AGCC-CTTTTCGATAAACTGGGGCAAA
*
26235480 AGCCCTTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTCGATAAACTGGGGCAAA
*
26235506 AGCCCTTTTCGGTAAACTGGGGC-AA
1 AGCCCTTTTCGATAAACTGGGGCAAA
* *
26235531 AGCCCTTTTCGGT-AACTGGGGC-AT
1 AGCCCTTTTCGATAAACTGGGGCAAA
26235555 AGCCCTTTT
1 AGCCCTTTT
26235564 GCACTTCCTC
Statistics
Matches: 79, Mismatches: 3, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
24 24 0.30
25 22 0.28
26 33 0.42
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCGATAAACTGGGGCAAA
Found at i:26235504 original size:26 final size:24
Alignment explanation
Indices: 26235441--26235563 Score: 131
Period size: 26 Copynumber: 4.9 Consensus size: 24
26235431 GCTTTATCAT
**
26235441 ATAACTGGAGGCCTAGCCTCTTTT-G
1 ATAACTGG-GGCAAAGCC-CTTTTCG
*
26235466 ATAACTGGGGCAAAAGCCCTTTTTG
1 ATAACTGGGGC-AAAGCCCTTTTCG
26235491 ATAAACTGGGGCAAAAGCCCTTTTCG
1 AT-AACTGGGGC-AAAGCCCTTTTCG
*
26235517 GTAAACTGGGGCAAAGCCCTTTTCG
1 AT-AACTGGGGCAAAGCCCTTTTCG
* *
26235542 GTAACTGGGGCATAGCCCTTTT
1 ATAACTGGGGCAAAGCCCTTTT
26235564 GCACTTCCTC
Statistics
Matches: 90, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
24 27 0.30
25 30 0.33
26 33 0.37
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCAAAGCCCTTTTCG
Found at i:26235733 original size:25 final size:25
Alignment explanation
Indices: 26235696--26235743 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
26235686 ATAATTAAAC
* * *
26235696 CCTAGGGGTAAAATGGTTATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
26235721 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
26235744 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:26237952 original size:43 final size:42
Alignment explanation
Indices: 26237809--26237956 Score: 115
Period size: 43 Copynumber: 3.5 Consensus size: 42
26237799 CAATGTAACA
* * * * *
26237809 TCCCATACGTGGTCTTACATAC-AATCACATATCGATGTCACTA
1 TCCCAAACGTGGTCTTAC--ACGAATCAAATATCGATGCCAATG
* * *
26237852 TCCCAGACAG-GGTCTTACACGAATCAAATA-CAATTCCAATG
1 TCCCAAAC-GTGGTCTTACACGAATCAAATATCGATGCCAATG
* * * * *
26237893 T-CCTAGCATGGTCTTACAGGTAATCATATATCGATGCCAATG
1 TCCCAAACGTGGTCTTACACG-AATCAAATATCGATGCCAATG
26237935 TCCCAAACGTGGTCTTACACGA
1 TCCCAAACGTGGTCTTACACGA
26237957 GAACAGATAT
Statistics
Matches: 80, Mismatches: 19, Indels: 13
0.71 0.17 0.12
Matches are distributed among these distances:
40 13 0.16
41 17 0.21
42 19 0.24
43 30 0.38
44 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (42 bp):
TCCCAAACGTGGTCTTACACGAATCAAATATCGATGCCAATG
Found at i:26238502 original size:15 final size:15
Alignment explanation
Indices: 26238479--26238508 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26238469 TCAAAAATTC
26238479 TAATACAAAACATAT
1 TAATACAAAACATAT
*
26238494 TAATCCAAAACATAT
1 TAATACAAAACATAT
26238509 CTTTCATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.27
Consensus pattern (15 bp):
TAATACAAAACATAT
Found at i:26244109 original size:46 final size:45
Alignment explanation
Indices: 26244042--26244206 Score: 154
Period size: 46 Copynumber: 3.6 Consensus size: 45
26244032 TGTGCTAGTA
* *
26244042 TAAGACATGTCTGAGACATGCATCAGCCACAGCATGAAAGCCAGTG
1 TAAGACATGTCTGCGACATGCATCAGCCAGAG-ATGAAAGCCAGTG
* **
26244088 TAAGACATGTCTGCGACATGCATCGGTCTTGAGAT-ATTTAAGCCAGTG
1 TAAGACATGTCTGCGACATGCATCAG-CCAGAGATGA---AAGCCAGTG
* * * * *
26244136 TAAGACATGTTTGCGACATGCATC-GGCATTGAGACGAGAGCTAGTG
1 TAAGACATGTCTGCGACATGCATCAGCCA--GAGATGAAAGCCAGTG
*
26244182 TAAGACATGTCTGGGACATGCATCA
1 TAAGACATGTCTGCGACATGCATCA
26244207 TCCTCGCAAT
Statistics
Matches: 97, Mismatches: 14, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
45 1 0.01
46 55 0.57
47 4 0.04
48 36 0.37
49 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (45 bp):
TAAGACATGTCTGCGACATGCATCAGCCAGAGATGAAAGCCAGTG
Found at i:26244376 original size:49 final size:49
Alignment explanation
Indices: 26244178--26244377 Score: 130
Period size: 49 Copynumber: 4.2 Consensus size: 49
26244168 GACGAGAGCT
* * * * *
26244178 AGTGTAAGACATGTCTGGGACAT-GCATCATCCTCGCAATAT-ACAAGCT
1 AGTGTAAGACTTGTCTAGGACATGGCATCAGCCTCGCTATATGA-AAGCC
* * * * *** *
26244226 AGTGTAAGACCTGTCTAAGACATGGCATAAG-CT---TGT-TGTCTGTC
1 AGTGTAAGACTTGTCTAGGACATGGCATCAGCCTCGCTATATGAAAGCC
* ** * *
26244270 AGTGTAAGACTTGTCTGGGACATGGCATC-GACAC-CAATAGATGAGAGCC
1 AGTGTAAGACTTGTCTAGGACATGGCATCAG-C-CTCGCTATATGAAAGCC
* *
26244319 AATATAAGACTTGTCTAGGACATGGCATCAGCCTCGCTATATGAAAGCC
1 AGTGTAAGACTTGTCTAGGACATGGCATCAGCCTCGCTATATGAAAGCC
26244368 AGTGTAAGAC
1 AGTGTAAGAC
26244378 CATGTTTGGG
Statistics
Matches: 110, Mismatches: 31, Indels: 21
0.68 0.19 0.13
Matches are distributed among these distances:
43 1 0.01
44 27 0.25
45 1 0.01
46 1 0.01
48 24 0.22
49 55 0.50
50 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACTTGTCTAGGACATGGCATCAGCCTCGCTATATGAAAGCC
Found at i:26251608 original size:12 final size:12
Alignment explanation
Indices: 26251591--26251615 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26251581 ACAACACATA
26251591 TTCAGAAAAATC
1 TTCAGAAAAATC
26251603 TTCAGAAAAATC
1 TTCAGAAAAATC
26251615 T
1 T
26251616 GATATCTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.16, G:0.08, T:0.28
Consensus pattern (12 bp):
TTCAGAAAAATC
Found at i:26253384 original size:72 final size:72
Alignment explanation
Indices: 26253267--26253483 Score: 425
Period size: 72 Copynumber: 3.0 Consensus size: 72
26253257 TTGTAAGTGG
26253267 AAATGGAAGCATGTCACTATGGATTTTCTTTCAAGGTTGCCATTGACTTTGAAAAAAAAAATAAT
1 AAATGGAAGCATGTCACTATGGATTTTCTTTCAAGGTTGCCATTGACTTTGAAAAAAAAAATAAT
26253332 TTGGATT
66 TTGGATT
26253339 AAATGGAAGCATGTCACTATGGATTTTCTTTCAAGGTTGCCATTGACTTTGAAAAAAAAAATAAT
1 AAATGGAAGCATGTCACTATGGATTTTCTTTCAAGGTTGCCATTGACTTTGAAAAAAAAAATAAT
26253404 TTGGATT
66 TTGGATT
*
26253411 AAATGGAAGCATGTCACTATGGATTTTCTTTCAAGGTTGCCATTGACTTTGAAAAAAAAATTAAT
1 AAATGGAAGCATGTCACTATGGATTTTCTTTCAAGGTTGCCATTGACTTTGAAAAAAAAAATAAT
26253476 TTGGATT
66 TTGGATT
26253483 A
1 A
26253484 TCGTAGATAG
Statistics
Matches: 144, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 144 1.00
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (72 bp):
AAATGGAAGCATGTCACTATGGATTTTCTTTCAAGGTTGCCATTGACTTTGAAAAAAAAAATAAT
TTGGATT
Found at i:26256981 original size:58 final size:58
Alignment explanation
Indices: 26256917--26257068 Score: 157
Period size: 57 Copynumber: 2.6 Consensus size: 58
26256907 CTATTGACCT
* * * *
26256917 TGTTACAAAAAGGATTTAGCCCGGA-TGGGTAATCCTGATTTAATCCC-TCTCGATCATA
1 TGTTACAAAAAGGATTTAGCCTGGACT-GGTAATCCTGAATTAAGCCCTTCT-GAGCATA
** * * * *
26256975 TGTTACAATTAGGGTTTAACCTGGACTGGTAATCCT-AATTGAGCTCTTCTGAGCATA
1 TGTTACAAAAAGGATTTAGCCTGGACTGGTAATCCTGAATTAAGCCCTTCTGAGCATA
* *
26257032 CGTTACATAAAGGATTTAGCCTGGACTGGTAATCCTG
1 TGTTACAAAAAGGATTTAGCCTGGACTGGTAATCCTG
26257069 TAATACAACC
Statistics
Matches: 75, Mismatches: 16, Indels: 6
0.77 0.16 0.06
Matches are distributed among these distances:
57 42 0.56
58 32 0.43
59 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (58 bp):
TGTTACAAAAAGGATTTAGCCTGGACTGGTAATCCTGAATTAAGCCCTTCTGAGCATA
Found at i:26271119 original size:13 final size:13
Alignment explanation
Indices: 26271101--26271125 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26271091 ATAAAAGTGA
26271101 AAAAAATAAAAAT
1 AAAAAATAAAAAT
26271114 AAAAAATAAAAA
1 AAAAAATAAAAA
26271126 GTCTTTAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:26278263 original size:19 final size:20
Alignment explanation
Indices: 26278190--26278273 Score: 68
Period size: 19 Copynumber: 4.3 Consensus size: 20
26278180 TTTTACTTAT
* *
26278190 TTATTTCATTCTTATTAGTA
1 TTATTTCATTATTATTATTA
*
26278210 TTATTTC-TTATTATTCTTA
1 TTATTTCATTATTATTATTA
26278229 TTTATTT-ATTTATTATT-TTA
1 -TTATTTCA-TTATTATTATTA
* * *
26278249 CTATTTCATTCTTATTGTT-
1 TTATTTCATTATTATTATTA
26278268 TTATTT
1 TTATTT
26278274 TGTTTTAGTG
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
19 26 0.49
20 19 0.36
21 8 0.15
ACGTcount: A:0.21, C:0.08, G:0.02, T:0.68
Consensus pattern (20 bp):
TTATTTCATTATTATTATTA
Found at i:26278264 original size:40 final size:40
Alignment explanation
Indices: 26278185--26278264 Score: 92
Period size: 40 Copynumber: 2.0 Consensus size: 40
26278175 TCCATTTTTA
* *
26278185 CTTATTTATTTCATTCTTATTAGTATTATTTCTTATTATT
1 CTTATTTATTTCATTATTATTAGTACTATTTCTTATTATT
* *
26278225 CTTATTTATTT-ATTTATTATT-TTACTATTTCATTCTTATT
1 CTTATTTATTTCA-TTATTATTAGTACTATTTC-TTATTATT
26278265 GTTTTATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
39 9 0.26
40 25 0.74
ACGTcount: A:0.23, C:0.10, G:0.01, T:0.66
Consensus pattern (40 bp):
CTTATTTATTTCATTATTATTAGTACTATTTCTTATTATT
Found at i:26287473 original size:46 final size:46
Alignment explanation
Indices: 26287423--26287595 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
26287413 TGGTTGAGCA
26287423 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
26287469 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
26287514 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * **
26287562 CCCGAGCTCGTTGAGTTGAGTCTAAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
26287596 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.56
47 29 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:26287590 original size:93 final size:93
Alignment explanation
Indices: 26287420--26287590 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
26287410 GGATGGTTGA
* *
26287420 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
26287485 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCAAGTTCGTGAAATGTAACTAG
*
26287513 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
26287578 TGAGTCTAAGTTC
66 TGAGTCCAAGTTC
26287591 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAAATGTAACTAG
Found at i:26295064 original size:46 final size:46
Alignment explanation
Indices: 26295014--26295182 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 46
26295004 TGAGCATCCA
26295014 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * * * *
26295060 AACTCGTTAAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* *
26295107 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
*
26295153 AGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
26295183 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 13, Indels: 18
0.77 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 56 0.55
47 28 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:26295166 original size:93 final size:93
Alignment explanation
Indices: 26295007--26295177 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
26294997 GGATGGTTGA
* *
26295007 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTAAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTAAGT
26295072 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
26295100 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTAAGT
26295165 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
26295178 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTAAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:26305882 original size:26 final size:26
Alignment explanation
Indices: 26305801--26305884 Score: 66
Period size: 26 Copynumber: 3.3 Consensus size: 26
26305791 GTTAGGTCGC
26305801 ATGTGTAGTACTAAGTGCAGGCTACT
1 ATGTGTAGTACTAAGTGCAGGCTACT
* * * * **
26305827 ATGCGTACGCGAC-AACTTCAATC-AC-
1 ATGTGTA-G-TACTAAGTGCAGGCTACT
*
26305852 GTGTGTAGTACTAAGTGCAGGCTACT
1 ATGTGTAGTACTAAGTGCAGGCTACT
26305878 ATGTGTA
1 ATGTGTA
26305885 TCAGATGGTT
Statistics
Matches: 39, Mismatches: 14, Indels: 10
0.62 0.22 0.16
Matches are distributed among these distances:
23 2 0.05
24 7 0.18
25 7 0.18
26 14 0.36
27 7 0.18
28 2 0.05
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
ATGTGTAGTACTAAGTGCAGGCTACT
Found at i:26305969 original size:49 final size:50
Alignment explanation
Indices: 26305701--26305989 Score: 269
Period size: 50 Copynumber: 5.7 Consensus size: 50
26305691 GAGAACACAC
* * *** * *
26305701 GTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGTCATGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGG--TTAGGTCACGT
* * * * *
26305753 GTGTAGTACTAAGTGCAGGCTACGACGTGTACCAAATAGTTAGGTCGCAT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACGT
* * *** *
26305803 GTGTAGTACTAAGTGCAGGCTACTATGCGTACGC-GACAACTTCA-ATCACGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGA-TGGTT-AGGTCACGT
* *
26305854 GTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCACGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACGT
* * * * *
26305904 GTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATTGTT-TGTCACAT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACGT
* *
26305953 GTTTAGTACTAAGTGCAGGCTACTACGCGTACCAGAT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
26305990 AGCTTCGGTT
Statistics
Matches: 196, Mismatches: 36, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
49 40 0.20
50 83 0.42
51 40 0.20
52 33 0.17
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACGT
Found at i:26306023 original size:150 final size:152
Alignment explanation
Indices: 26305703--26306023 Score: 378
Period size: 150 Copynumber: 2.1 Consensus size: 152
26305693 GAACACACGT
* * *
26305703 GTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGTCATGTGTGTAGTACTAAGTG
1 GTAGTAATATGTGCAGGCTACTATGTGTATAAAATGG-TTTAGGTCACGTGTGTAGTACTAAGTG
* * *
26305768 CAGGCTACGACGTGTACCAAATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGT
65 CAAGCTACGACGTGTACCAAATAGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGT
** *
26305833 ACGCGACAACTTCAATCACGTGT
130 ACGCGACAACTTCAATCACAAGG
* * * *
26305856 GTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGG-TTAGGTCACGTGTGTAGTACTAAGTGC
1 GTAGTAATATGTGCAGGCTACTATGTGTATAAAATGGTTTAGGTCACGTGTGTAGTACTAAGTGC
* ** * * *
26305920 AAGCTACTACGTGTACCGGATTGTT-TGTCACATGTTTAGTACTAAGTGCAGGCTACTACGCGTA
66 AAGCTACGACGTGTACCAAATAGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTA
* * ** *
26305984 C-CAGATAGCTTCGGTTACAAGG
131 CGC-GACAACTTCAATCACAAGG
*
26306006 GTGGTAATATGTGCAGGC
1 GTAGTAATATGTGCAGGC
26306024 AACCGTGTAT
Statistics
Matches: 142, Mismatches: 25, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
149 1 0.01
150 62 0.44
151 46 0.32
153 33 0.23
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (152 bp):
GTAGTAATATGTGCAGGCTACTATGTGTATAAAATGGTTTAGGTCACGTGTGTAGTACTAAGTGC
AAGCTACGACGTGTACCAAATAGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTA
CGCGACAACTTCAATCACAAGG
Found at i:26308054 original size:68 final size:68
Alignment explanation
Indices: 26307963--26308125 Score: 179
Period size: 68 Copynumber: 2.4 Consensus size: 68
26307953 TTCACCTAGC
* * * ** *
26307963 GCCATAGCCGAGCTATGGTCTTACACAGTCTG-AA-CCTATGTTTAACGTCCTGGTGGACTCTAT
1 GCCATAGCTGAGCTATGGTCTTACAC-CT-TGTAACCCCATGTTTAACGTCCTAATAGACTCTAT
26308026 TGGTT
64 TGGTT
*
26308031 GCCATAGCTGAGCTATGGTCTTACACCTTGTAACCCCATGTTTAATGTCCTAATAGACTCTATTG
1 GCCATAGCTGAGCTATGGTCTTACACCTTGTAACCCCATGTTTAACGTCCTAATAGACTCTATTG
26308096 GTT
66 GTT
* *
26308099 TCCGTAG-TCGAGCTATATGGTCTTACA
1 GCCATAGCT-GAGC--TATGGTCTTACA
26308126 TATTAAACCT
Statistics
Matches: 81, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
66 2 0.02
67 4 0.05
68 63 0.78
70 12 0.15
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (68 bp):
GCCATAGCTGAGCTATGGTCTTACACCTTGTAACCCCATGTTTAACGTCCTAATAGACTCTATTG
GTT
Found at i:26309975 original size:21 final size:22
Alignment explanation
Indices: 26309934--26309976 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
26309924 TAGTCAATGC
26309934 GGAATTAAAATTAACTTTTTAA
1 GGAATTAAAATTAACTTTTTAA
26309956 GGAATTAAAATTAA-TTTTTAA
1 GGAATTAAAATTAACTTTTTAA
26309977 TTAAAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.42
Consensus pattern (22 bp):
GGAATTAAAATTAACTTTTTAA
Found at i:26313603 original size:15 final size:15
Alignment explanation
Indices: 26313583--26313620 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
26313573 TTTCGTGTTT
26313583 CTTGCATCTATTGAG
1 CTTGCATCTATTGAG
26313598 CTTGCATCTATTGAG
1 CTTGCATCTATTGAG
26313613 CTTGCATC
1 CTTGCATC
26313621 CTCAAACCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.39
Consensus pattern (15 bp):
CTTGCATCTATTGAG
Found at i:26316616 original size:21 final size:20
Alignment explanation
Indices: 26316558--26316637 Score: 65
Period size: 20 Copynumber: 3.9 Consensus size: 20
26316548 GGTCTAAAAT
26316558 TATTATTTTAGAAATTTTTTTA
1 TATT-TTTTAG-AATTTTTTTA
* *
26316580 -ATTCTTTA-ATTTTTTTCTA
1 TATTTTTTAGAATTTTTT-TA
26316599 TATTTTTTAGAATTTTTTTTA
1 TATTTTTTAGAA-TTTTTTTA
* **
26316620 AAAATTTTAGAATTTTTT
1 TATTTTTTAGAATTTTTT
26316638 AAAAAATATA
Statistics
Matches: 47, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
18 7 0.15
19 2 0.04
20 17 0.36
21 15 0.32
22 6 0.13
ACGTcount: A:0.29, C:0.03, G:0.04, T:0.65
Consensus pattern (20 bp):
TATTTTTTAGAATTTTTTTA
Found at i:26316637 original size:20 final size:21
Alignment explanation
Indices: 26316603--26316644 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
26316593 TTTCTATATT
*
26316603 TTTTAGAATTTTTTTTAAAAA
1 TTTTAGAATTTTTTTAAAAAA
26316624 TTTTAGAA-TTTTTTAAAAAA
1 TTTTAGAATTTTTTTAAAAAA
26316644 T
1 T
26316645 ATAAATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (21 bp):
TTTTAGAATTTTTTTAAAAAA
Found at i:26316643 original size:21 final size:21
Alignment explanation
Indices: 26316603--26316643 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26316593 TTTCTATATT
**
26316603 TTTTAGAATTTTTTTTAAAAA
1 TTTTAGAATTTTTTAAAAAAA
26316624 TTTTAGAATTTTTTAAAAAA
1 TTTTAGAATTTTTTAAAAAA
26316644 TATAAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (21 bp):
TTTTAGAATTTTTTAAAAAAA
Found at i:26316651 original size:18 final size:19
Alignment explanation
Indices: 26316613--26316654 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
26316603 TTTTAGAATT
* *
26316613 TTTTTTAAAAATTTTAGAA
1 TTTTTTAAAAAATATAGAA
26316632 TTTTTTAAAAAATATA-AA
1 TTTTTTAAAAAATATAGAA
26316650 TTTTT
1 TTTTT
26316655 GAAATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
TTTTTTAAAAAATATAGAA
Found at i:26316654 original size:19 final size:20
Alignment explanation
Indices: 26316606--26316654 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
26316596 CTATATTTTT
* *
26316606 TAGAATTTTTTTTAAAAATTT
1 TAGAA-TTTTTTTAAAAAATA
26316627 TAGAA-TTTTTTAAAAAATA
1 TAGAATTTTTTTAAAAAATA
26316646 TA-AATTTTT
1 TAGAATTTTT
26316655 GAAATTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 2 0.08
19 18 0.72
21 5 0.20
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (20 bp):
TAGAATTTTTTTAAAAAATA
Found at i:26316666 original size:19 final size:19
Alignment explanation
Indices: 26316644--26316721 Score: 65
Period size: 20 Copynumber: 4.1 Consensus size: 19
26316634 TTTTAAAAAA
26316644 TATAAAT-TTTTGAAATTTT
1 TATAAATATTTTG-AATTTT
26316663 TATAAATATTTTGAA-TTT
1 TATAAATATTTTGAATTTT
*
26316681 TAAAAATTAATTTT-AATTTT
1 TATAAA-T-ATTTTGAATTTT
*
26316701 TGA-AAATTATTTTGCATTTT
1 T-ATAAA-TATTTTGAATTTT
26316721 T
1 T
26316722 TATTGAGGGA
Statistics
Matches: 51, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
18 8 0.16
19 17 0.33
20 25 0.49
21 1 0.02
ACGTcount: A:0.37, C:0.01, G:0.05, T:0.56
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:26316721 original size:20 final size:19
Alignment explanation
Indices: 26316658--26316721 Score: 67
Period size: 20 Copynumber: 3.3 Consensus size: 19
26316648 AATTTTTGAA
*
26316658 ATTTTTATAAA-TATTTTG
1 ATTTTTAAAAATTATTTTG
* *
26316676 AATTTTAAAAATTAATTTTA
1 ATTTTTAAAAATT-ATTTTG
*
26316696 ATTTTTGAAAATTATTTTG
1 ATTTTTAAAAATTATTTTG
26316715 CATTTTT
1 -ATTTTT
26316722 TATTGAGGGA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
18 9 0.24
19 6 0.16
20 22 0.59
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.58
Consensus pattern (19 bp):
ATTTTTAAAAATTATTTTG
Found at i:26318331 original size:19 final size:17
Alignment explanation
Indices: 26318301--26318339 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 17
26318291 AGATTTACTA
*
26318301 AAATATTATAAATTTAT
1 AAATATTATAAAATTAT
26318318 AAATCATTATTAAAATTAT
1 AAAT-ATTA-TAAAATTAT
26318337 AAA
1 AAA
26318340 AAATATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 4 0.21
19 11 0.58
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
AAATATTATAAAATTAT
Found at i:26318346 original size:18 final size:19
Alignment explanation
Indices: 26318300--26318349 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
26318290 AAGATTTACT
26318300 AAAATATTATAAATTTATAA
1 AAAATATTA-AAATTTATAA
* *
26318320 ATCATTATTAAAA-TTATAA
1 A-AAATATTAAAATTTATAA
26318339 AAAATATTAAA
1 AAAATATTAAA
26318350 TAAGATTCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
18 8 0.32
19 7 0.28
20 4 0.16
21 6 0.24
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAATATTAAAATTTATAA
Found at i:26319075 original size:17 final size:17
Alignment explanation
Indices: 26319053--26319087 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
26319043 TAGAATGTTT
26319053 TTAGAGCCGATAAGAAA
1 TTAGAGCCGATAAGAAA
*
26319070 TTAGAGCCGGTAAGAAA
1 TTAGAGCCGATAAGAAA
26319087 T
1 T
26319088 AAACTAAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.43, C:0.11, G:0.26, T:0.20
Consensus pattern (17 bp):
TTAGAGCCGATAAGAAA
Found at i:26321213 original size:46 final size:46
Alignment explanation
Indices: 26321146--26321257 Score: 170
Period size: 46 Copynumber: 2.4 Consensus size: 46
26321136 CTAGTGTATG
26321146 ACATGTATGGGACATGCATCAGCCACAGCATGAGAGCCAGCGTAAC
1 ACATGTATGGGACATGCATCAGCCACAGCATGAGAGCCAGCGTAAC
* * * *
26321192 ACATGTCTGGGACATGCATCAGCCACATCATGAGAGCCAGTGTAAG
1 ACATGTATGGGACATGCATCAGCCACAGCATGAGAGCCAGCGTAAC
* *
26321238 ACATCTTTGGGACATGCATC
1 ACATGTATGGGACATGCATC
26321258 GGCGTCGAGA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 60 1.00
ACGTcount: A:0.30, C:0.25, G:0.25, T:0.20
Consensus pattern (46 bp):
ACATGTATGGGACATGCATCAGCCACAGCATGAGAGCCAGCGTAAC
Found at i:26321304 original size:94 final size:93
Alignment explanation
Indices: 26321180--26321391 Score: 237
Period size: 94 Copynumber: 2.3 Consensus size: 93
26321170 ACAGCATGAG
* * * *
26321180 AGCCAGCGTAACACATGTCTGGGACATGCATCAGCCACAT-CATGAGAGCCAGTGTAAGACATCT
1 AGCCAGTGTAAGACATGTCTGAGACATGCATCAG-CA-ATACACGAGAGCCAGTGTAAGACATCT
* * * **
26321244 TTGGGACATGCATCGGCGTCGAGATATTTA
64 CTAGGACATGCATCGGCCTCGAGATATACA
* * * *
26321274 AGCCAGTGTAAGACATGTCTGAGACATGCATCAGCATTGAGACGAGAGCTAGTGTAAGACATGTC
1 AGCCAGTGTAAGACATGTCTGAGACATGCATCAGCAAT-ACACGAGAGCCAGTGTAAGACATCTC
*
26321339 TAGGACATGCATCGGCCTCGTGATATACA
65 TAGGACATGCATCGGCCTCGAGATATACA
* * *
26321368 AGCTAGTGTAAGACCTGTTTGAGA
1 AGCCAGTGTAAGACATGTCTGAGA
26321392 GATGGTGTCA
Statistics
Matches: 99, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
92 1 0.01
93 2 0.02
94 96 0.97
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (93 bp):
AGCCAGTGTAAGACATGTCTGAGACATGCATCAGCAATACACGAGAGCCAGTGTAAGACATCTCT
AGGACATGCATCGGCCTCGAGATATACA
Found at i:26323831 original size:40 final size:40
Alignment explanation
Indices: 26323733--26324755 Score: 1836
Period size: 40 Copynumber: 25.6 Consensus size: 40
26323723 TCCTCGTTCA
* * * * *
26323733 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
26323772 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
26323812 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26323852 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26323892 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26323932 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26323972 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26324012 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26324052 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26324092 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26324132 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26324172 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26324212 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26324252 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26324292 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26324332 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26324372 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26324412 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26324452 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26324492 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26324532 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26324572 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26324612 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
26324652 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
26324692 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
26324732 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
26324756 CAGCATTCAA
Statistics
Matches: 960, Mismatches: 20, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
39 37 0.04
40 915 0.95
41 8 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:26326279 original size:100 final size:100
Alignment explanation
Indices: 26326138--26326333 Score: 252
Period size: 100 Copynumber: 2.0 Consensus size: 100
26326128 AGCTTGAAAT
*
26326138 TTTCACACATTCATAATTACATATTCTACACAATAAGTATCACATTCAAA-CATTTCGGTGACTC
1 TTTCACACATTCATAATTACATATTCTACACAATAAGTATCACATTCAAATAATTT-GGTGACTC
* *
26326202 GGTTTAGTGGTCCCGAAACCACTTCCCGACTAAAAC
65 GGTCTAGCGGTCCCGAAACCACTTCCCGACTAAAAC
* * ** *
26326238 TTTCACACATTTAT-ATTCACATATTTTAGGCAATAATTATCACATTCAAATAATTTGGTGACTC
1 TTTCACACATTCATAATT-ACATATTCTACACAATAAGTATCACATTCAAATAATTTGGTGACTC
* * * *
26326302 GGTCTAGCGGTCTCGAGACCGCTTTCCGACTA
65 GGTCTAGCGGTCCCGAAACCACTTCCCGACTA
26326334 GGGTCACTTT
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
99 3 0.04
100 75 0.91
101 4 0.05
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.33
Consensus pattern (100 bp):
TTTCACACATTCATAATTACATATTCTACACAATAAGTATCACATTCAAATAATTTGGTGACTCG
GTCTAGCGGTCCCGAAACCACTTCCCGACTAAAAC
Found at i:26331482 original size:59 final size:58
Alignment explanation
Indices: 26331390--26331503 Score: 201
Period size: 59 Copynumber: 1.9 Consensus size: 58
26331380 AGTACAGTTT
*
26331390 ATTAGTCAAAGTCTCCCATGTTGCAGGGGTCGACTACACTGACCTTTGCCCATTAAGA
1 ATTAGTCAAAGTCTCCCATGTTACAGGGGTCGACTACACTGACCTTTGCCCATTAAGA
*
26331448 NATTAGTCAAAGTCTCCCATGTTACAGGGGTCGACTACACTGACCTTTTCCCATTA
1 -ATTAGTCAAAGTCTCCCATGTTACAGGGGTCGACTACACTGACCTTTGCCCATTA
26331504 CAACTTGGAT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
59 53 1.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.29
Consensus pattern (58 bp):
ATTAGTCAAAGTCTCCCATGTTACAGGGGTCGACTACACTGACCTTTGCCCATTAAGA
Found at i:26332703 original size:40 final size:39
Alignment explanation
Indices: 26332605--26332787 Score: 188
Period size: 40 Copynumber: 4.6 Consensus size: 39
26332595 TCCTCGTTCA
* * *
26332605 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* * *
26332644 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* *
26332683 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* * * * * *
26332723 AAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCAC
*
26332764 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
26332788 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
39 38 0.31
40 76 0.62
41 8 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
Found at i:26332796 original size:41 final size:41
Alignment explanation
Indices: 26332719--26332796 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
26332709 TTAGTATCTC
* * *
26332719 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
26332760 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
26332797 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:26333870 original size:89 final size:89
Alignment explanation
Indices: 26333719--26333895 Score: 345
Period size: 89 Copynumber: 2.0 Consensus size: 89
26333709 CTCTTCACCT
*
26333719 TTCTTCTTCTTTCCTCCTTAAAATTTTTGGCCAAGGATGAACCAAAGGATGAGAGATTTTTTTCT
1 TTCTTCTTCTTTCCTCCTTAAAATTTTTGGCCAAGGATGAACCAAAGGATGAGAAATTTTTTTCT
26333784 TTGTTTTTCTTTCTAATTTAGGCG
66 TTGTTTTTCTTTCTAATTTAGGCG
26333808 TTCTTCTTCTTTCCTCCTTAAAATTTTTGGCCAAGGATGAACCAAAGGATGAGAAATTTTTTTCT
1 TTCTTCTTCTTTCCTCCTTAAAATTTTTGGCCAAGGATGAACCAAAGGATGAGAAATTTTTTTCT
26333873 TTGTTTTTCTTTCTAATTTAGGC
66 TTGTTTTTCTTTCTAATTTAGGC
26333896 TAAATGAAGG
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
89 87 1.00
ACGTcount: A:0.22, C:0.17, G:0.15, T:0.46
Consensus pattern (89 bp):
TTCTTCTTCTTTCCTCCTTAAAATTTTTGGCCAAGGATGAACCAAAGGATGAGAAATTTTTTTCT
TTGTTTTTCTTTCTAATTTAGGCG
Found at i:26334706 original size:37 final size:37
Alignment explanation
Indices: 26334658--26334758 Score: 141
Period size: 37 Copynumber: 2.7 Consensus size: 37
26334648 ATGTGGTACG
26334658 TGTAAGACCATAGCTGGGCTATGGCATCATAAT-AGCA
1 TGTAAGACCATAGCTGGGCTATGGCATCATAATGA-CA
* * * *
26334695 TGTAAGACCATAGCTGGACTAGGGCATCCTGATGACA
1 TGTAAGACCATAGCTGGGCTATGGCATCATAATGACA
*
26334732 TGTAAGACCATAGCAGGGCTATGGCAT
1 TGTAAGACCATAGCTGGGCTATGGCAT
26334759 TGTGATATGT
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
37 55 0.98
38 1 0.02
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.23
Consensus pattern (37 bp):
TGTAAGACCATAGCTGGGCTATGGCATCATAATGACA
Found at i:26334862 original size:48 final size:48
Alignment explanation
Indices: 26334791--26335072 Score: 415
Period size: 48 Copynumber: 5.9 Consensus size: 48
26334781 CTGGGACATG
* *
26334791 GCATCGATATGAGATCATGTGTAAGACCATATCTGGGATATGGCATCA
1 GCATCGATATGAGATCTTGTGTAAGACCATATCTGGGATATGACATCA
*
26334839 GCATCAATATGAGATCTTGTGTAAGACCATATCTGGGATATGACATCA
1 GCATCGATATGAGATCTTGTGTAAGACCATATCTGGGATATGACATCA
* * *
26334887 GCATCGATATGAGATCTTGTGTAAGATCATACCTGGGGTATGACATCA
1 GCATCGATATGAGATCTTGTGTAAGACCATATCTGGGATATGACATCA
* * * * *
26334935 GCATCAATATGAGATCTTATGTAAAACCATATTTGGGATATGGCATCA
1 GCATCGATATGAGATCTTGTGTAAGACCATATCTGGGATATGACATCA
26334983 GCATCGATATGAGATCTTGTGTAAGACCATATCTGGGATATGACATC-
1 GCATCGATATGAGATCTTGTGTAAGACCATATCTGGGATATGACATCA
* *
26335030 GACATCGATATGAGAT-TACGTGTAAGACCATATCTAGGATATG
1 G-CATCGATATGAGATCT-TGTGTAAGACCATATCTGGGATATG
26335073 GCTTCGGTAT
Statistics
Matches: 210, Mismatches: 22, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
47 2 0.01
48 208 0.99
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (48 bp):
GCATCGATATGAGATCTTGTGTAAGACCATATCTGGGATATGACATCA
Found at i:26346051 original size:12 final size:12
Alignment explanation
Indices: 26346034--26346060 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
26346024 CATTACTTAA
26346034 TCAACTTATATG
1 TCAACTTATATG
26346046 TCAACTTATATG
1 TCAACTTATATG
26346058 TCA
1 TCA
26346061 TTTGCCATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.19, G:0.07, T:0.41
Consensus pattern (12 bp):
TCAACTTATATG
Found at i:26356339 original size:29 final size:29
Alignment explanation
Indices: 26356307--26356364 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
26356297 GTATGTGGTA
26356307 AAAAAATTTTAAGGATTAGGTGAAATGGG
1 AAAAAATTTTAAGGATTAGGTGAAATGGG
26356336 AAAAAATTTTAAGGATTAGGTGAAATGGG
1 AAAAAATTTTAAGGATTAGGTGAAATGGG
26356365 CTGAGGAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.28, T:0.28
Consensus pattern (29 bp):
AAAAAATTTTAAGGATTAGGTGAAATGGG
Found at i:26363123 original size:23 final size:23
Alignment explanation
Indices: 26363058--26363176 Score: 87
Period size: 23 Copynumber: 5.0 Consensus size: 23
26363048 TACCGATATA
* *
26363058 TCAGCTCGTAAGAGCTTACTGTT
1 TCAGCTCATTAGAGCTTACTGTT
* *
26363081 CTCACCT-TTTATGAGCTTACTGTT
1 -TCAGCTCATTA-GAGCTTACTGTT
*
26363105 TCAGCTCATTAGAGCTTACCGTT
1 TCAGCTCATTAGAGCTTACTGTT
* * * *
26363128 TCAACTTAATAGAGCTTACTGTCCA
1 TCAGCTCATTAGAGCTTACTGT--T
**
26363153 TCAGCTCAGGAGGAGCTTACTGTT
1 TCAGCTCATTA-GAGCTTACTGTT
26363177 CATAGCTCGA
Statistics
Matches: 74, Mismatches: 16, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
23 36 0.49
24 20 0.27
25 7 0.09
26 11 0.15
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (23 bp):
TCAGCTCATTAGAGCTTACTGTT
Found at i:26364919 original size:13 final size:13
Alignment explanation
Indices: 26364901--26364925 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26364891 AAAGCATTAC
26364901 CATAAAAACATAG
1 CATAAAAACATAG
26364914 CATAAAAACATA
1 CATAAAAACATA
26364926 ATTTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
CATAAAAACATAG
Found at i:26386551 original size:52 final size:50
Alignment explanation
Indices: 26386483--26386581 Score: 137
Period size: 52 Copynumber: 1.9 Consensus size: 50
26386473 TAGTGTCGGC
*
26386483 TATATATTTTTACACTTAGTGT-GCGAGATTGAGATAGCTTCAGCTATATA
1 TATATATTTTTACACTTAGT-TAGCAAGATTGAGATAGCTTCAGCTATATA
* *
26386533 TATATATTTATTGCCACTTAGTTAGCAAGATTGATATAGCTTCAGCTAT
1 TATATATTT-TT-ACACTTAGTTAGCAAGATTGAGATAGCTTCAGCTAT
26386582 TTATTTGGCA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
50 9 0.21
51 3 0.07
52 31 0.72
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.40
Consensus pattern (50 bp):
TATATATTTTTACACTTAGTTAGCAAGATTGAGATAGCTTCAGCTATATA
Found at i:26393297 original size:18 final size:19
Alignment explanation
Indices: 26393264--26393311 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
26393254 TCTCAATCAT
*
26393264 ATAAACAGTAATTCATTCG
1 ATAAACAGTAACTCATTCG
26393283 ATAAA-AGTAACTCATTCG
1 ATAAACAGTAACTCATTCG
*
26393301 TTTAAACAGTA
1 -ATAAACAGTA
26393312 CTTCATCCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 12 0.48
19 9 0.36
20 4 0.16
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.31
Consensus pattern (19 bp):
ATAAACAGTAACTCATTCG
Found at i:26393317 original size:20 final size:19
Alignment explanation
Indices: 26393264--26393330 Score: 59
Period size: 19 Copynumber: 3.5 Consensus size: 19
26393254 TCTCAATCAT
*
26393264 ATAAACAGTAATTCATTCG
1 ATAAACAGTACTTCATTCG
26393283 ATAAA-AGTAAC-TCATTCG
1 ATAAACAGT-ACTTCATTCG
* *
26393301 TTTAAACAGTACTTCA-TCC
1 -ATAAACAGTACTTCATTCG
26393320 ATATAACAGTA
1 ATA-AACAGTA
26393331 ATTTATCCGT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
18 12 0.31
19 21 0.54
20 6 0.15
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (19 bp):
ATAAACAGTACTTCATTCG
Found at i:26396470 original size:25 final size:26
Alignment explanation
Indices: 26396416--26396470 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
26396406 TTTCATATTT
26396416 TATAATAAGATTAAATATGTAATTAA
1 TATAATAAGATTAAATATGTAATTAA
* *
26396442 -ATAATACG-TTAATATATGTTA-TAA
1 TATAATAAGATTAA-ATATGTAATTAA
26396466 TATAA
1 TATAA
26396471 CAAAAATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
24 7 0.28
25 18 0.72
ACGTcount: A:0.51, C:0.02, G:0.07, T:0.40
Consensus pattern (26 bp):
TATAATAAGATTAAATATGTAATTAA
Found at i:26397376 original size:45 final size:45
Alignment explanation
Indices: 26397312--26397399 Score: 122
Period size: 45 Copynumber: 2.0 Consensus size: 45
26397302 TAGGCTTCCA
* * * *
26397312 ATATGTGTTTTCGTGTAAGACGACATTTGGGACATTGGCATCGAT
1 ATATGTGGTTACGTGTAAGACCACATTTGGGACATCGGCATCGAT
**
26397357 ATATGTGGTTACGTGTAAGACCATTTTTGGGACATCGGCATCG
1 ATATGTGGTTACGTGTAAGACCACATTTGGGACATCGGCATCG
26397400 TATTGATTCG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (45 bp):
ATATGTGGTTACGTGTAAGACCACATTTGGGACATCGGCATCGAT
Found at i:26397412 original size:40 final size:42
Alignment explanation
Indices: 26397312--26397462 Score: 112
Period size: 45 Copynumber: 3.5 Consensus size: 42
26397302 TAGGCTTCCA
* * *
26397312 ATATGTGTTTTCGTGTAAGACGACATTTGGGACATTGGCATCG
1 ATATGTG-ATTCGTGTAAGACCACATTTGGGACATCGGCATCG
* **
26397355 ATATATGTGGTTACGTGTAAGACCATTTTTGGGACATCGGCATCG
1 --ATATGTGATT-CGTGTAAGACCACATTTGGGACATCGGCATCG
* *
26397400 -TAT-TGATTCGTGTAAGACC-CTATCTAGGACAGT-GGCATCG
1 ATATGTGATTCGTGTAAGACCAC-ATTTGGGACA-TCGGCATCG
* * *
26397440 ATATGAGATAACATGTAAGACCA
1 ATATGTGAT-TCGTGTAAGACCA
26397463 TGTCTGGGAC
Statistics
Matches: 86, Mismatches: 13, Indels: 15
0.75 0.11 0.13
Matches are distributed among these distances:
40 25 0.29
41 8 0.09
42 6 0.07
43 10 0.12
44 2 0.02
45 35 0.41
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (42 bp):
ATATGTGATTCGTGTAAGACCACATTTGGGACATCGGCATCG
Found at i:26405823 original size:45 final size:45
Alignment explanation
Indices: 26405764--26405888 Score: 162
Period size: 45 Copynumber: 2.8 Consensus size: 45
26405754 TAGGATTTCG
*
26405764 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
* * * *
26405809 ATATGTGTTTTCGTGTAAGAACATGTCGGGGGCATTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
* * *
26405854 ATATGTGATTACATGTAAGACC-CTGTCTGGGACAT
1 ATATGTGTTTTCGTGTAAGACCAC-GTCTGGGACAT
26405889 CAGCATCGTA
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
45 67 1.00
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (45 bp):
ATATGTGTTTTCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
Found at i:26405895 original size:45 final size:45
Alignment explanation
Indices: 26405777--26405969 Score: 145
Period size: 45 Copynumber: 4.4 Consensus size: 45
26405767 TGTGTTTTCG
* * * *
26405777 TGTAAGACCAC-GTCTGGGACGTTGGCATCGATATATGTGTTTTCG
1 TGTAAGACC-CTGTCTGGGACATTGGCATCGATATATGTGATTACA
* * * *
26405822 TGTAAGAACATGTCGGGGGCATTGGCATCGATATATGTGATTACA
1 TGTAAGACCCTGTCTGGGACATTGGCATCGATATATGTGATTACA
** *
26405867 TGTAAGACCCTGTCTGGGACATCAGCATCG---TAT-TGATT-CG
1 TGTAAGACCCTGTCTGGGACATTGGCATCGATATATGTGATTACA
* * * * *
26405907 TGTAAAACCCTCTCTAGGACAGTGGCATCG--ATATGAGA-TAGCA
1 TGTAAGACCCTGTCTGGGACATTGGCATCGATATATGTGATTA-CA
26405950 TGTAAGACCAC-GTCTGGGAC
1 TGTAAGACC-CTGTCTGGGAC
26405970 GTCGGCATTT
Statistics
Matches: 116, Mismatches: 26, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
40 25 0.22
41 9 0.08
42 5 0.04
43 16 0.14
44 1 0.01
45 60 0.52
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (45 bp):
TGTAAGACCCTGTCTGGGACATTGGCATCGATATATGTGATTACA
Found at i:26408597 original size:41 final size:42
Alignment explanation
Indices: 26408552--26408703 Score: 137
Period size: 42 Copynumber: 3.6 Consensus size: 42
26408542 AATCATACCA
* * *
26408552 ATGCCCT-TCCCAAATATGGTCTTACATGGGATCTCATATTG
1 ATGCCCTATCCCAGATATGGTCTTACATGAGATCTCATATCG
* * * * *
26408593 ATGCCAATAGCCCAGCTATGGTCTTACACGA-TTCTCATATCG
1 ATGCC-CTATCCCAGATATGGTCTTACATGAGATCTCATATCG
* * * *
26408635 ATGCCCTATCCCAGACATGGTCTTACATGAAATCTCATAACA
1 ATGCCCTATCCCAGATATGGTCTTACATGAGATCTCATATCG
* * * *
26408677 AAGTCATATCCCAGATATGGACTTACA
1 ATGCCCTATCCCAGATATGGTCTTACA
26408704 CATAAACTCA
Statistics
Matches: 87, Mismatches: 21, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
41 25 0.29
42 45 0.52
43 17 0.20
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (42 bp):
ATGCCCTATCCCAGATATGGTCTTACATGAGATCTCATATCG
Found at i:26408638 original size:42 final size:42
Alignment explanation
Indices: 26408566--26408661 Score: 108
Period size: 41 Copynumber: 2.3 Consensus size: 42
26408556 CCTTCCCAAA
* *
26408566 TATGGTCTTACATGGGATCTCATATTGATGCCAATAGCCCAG-C
1 TATGGTCTTACA-GCGATCTCATATCGATGCC-ATAGCCCAGAC
* *
26408609 TATGGTCTTACA-CGATTCTCATATCGATGCCCTATCCCAGAC
1 TATGGTCTTACAGCGA-TCTCATATCGATGCCATAGCCCAGAC
26408651 -ATGGTCTTACA
1 TATGGTCTTACA
26408662 TGAAATCTCA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
41 20 0.43
42 15 0.32
43 12 0.26
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (42 bp):
TATGGTCTTACAGCGATCTCATATCGATGCCATAGCCCAGAC
Found at i:26410411 original size:42 final size:42
Alignment explanation
Indices: 26410352--26410513 Score: 184
Period size: 42 Copynumber: 3.9 Consensus size: 42
26410342 ACATTAGGGT
* *
26410352 TATGAG-TTTACGTGTAAGACCATATTTGGGATATGGCATCGC
1 TATGAGATTT-CGTGTAAGACCATATCTGGGATATGGCATCGA
* *
26410394 TATGAGATTTCGTGTAAGACCATGTTTGGGATATGGCATCGA
1 TATGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCGA
* * * * *
26410436 TATGAGA-ATCGTGTAAGACCATAGCTGGGCTATTGGTATTGA
1 TATGAGATTTCGTGTAAGACCATATCTGGGATA-TGGCATCGA
** *
26410478 TATGAGATCCCATGTAAGACCATATCTGGGATATGG
1 TATGAGATTTCGTGTAAGACCATATCTGGGATATGG
26410514 TATTGGTATG
Statistics
Matches: 103, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
41 20 0.19
42 60 0.58
43 23 0.22
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (42 bp):
TATGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCGA
Found at i:26413567 original size:20 final size:20
Alignment explanation
Indices: 26413513--26413569 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
26413503 GAGCTGGAAT
* *
26413513 TGAGCTGGATGTGAACTTGT
1 TGAGCTGGATGTGAGCTTGC
**
26413533 TGAGCTGGAACTGAGCTTGC
1 TGAGCTGGATGTGAGCTTGC
*
26413553 TGAGCTGGTTGTGAGCT
1 TGAGCTGGATGTGAGCT
26413570 GGACGAGCTA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.18, C:0.14, G:0.37, T:0.32
Consensus pattern (20 bp):
TGAGCTGGATGTGAGCTTGC
Found at i:26414440 original size:42 final size:43
Alignment explanation
Indices: 26414333--26414569 Score: 370
Period size: 43 Copynumber: 5.6 Consensus size: 43
26414323 GAACAAAACT
* *
26414333 GGTTGCCGATGGTGCCCGAGGCTCCTGCATGACCAGGGGCCTA
1 GGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTA
*
26414376 GGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
1 GGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTA
* *
26414419 GG-TGCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGGCCTA
1 GGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTA
* *
26414461 GGTTGCCGATGGT-CCCGAGGCTCTCGGACGACCAGGGGCCTA
1 GGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTA
*
26414503 GGTTGCCGATGGTGCCCGAGGCTTCCGCACGACCAGGGGCCTA
1 GGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTA
* *
26414546 GGTTGCCGATAGTGTCCGAGGCTC
1 GGTTGCCGATGGTGCCCGAGGCTC
26414570 TATGGAGTTC
Statistics
Matches: 178, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
42 79 0.44
43 99 0.56
ACGTcount: A:0.15, C:0.32, G:0.36, T:0.16
Consensus pattern (43 bp):
GGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTA
Found at i:26414510 original size:85 final size:85
Alignment explanation
Indices: 26414333--26414570 Score: 363
Period size: 85 Copynumber: 2.8 Consensus size: 85
26414323 GAACAAAACT
* *
26414333 GGTTGCCGATGGTGCCCGAGGCTCCTGCATGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGC
1 GGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGT-CCCGAGGC
*
26414398 TCCCGCACGACCAAGGGCCTA
65 TCTCGCACGACCAAGGGCCTA
* *
26414419 GG-TGCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTCCCGAGGCT
1 GGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTCCCGAGGCT
* *
26414483 CTCGGACGACCAGGGGCCTA
66 CTCGCACGACCAAGGGCCTA
*
26414503 GGTTGCCGATGGTGCCCGAGGCTTCCGCACGACCAGGGGCCTAGGTTGCCGATAGTGT-CCGAGG
1 GGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGAT-G-GTCCCGAGG
26414567 CTCT
64 CTCT
26414571 ATGGAGTTCT
Statistics
Matches: 139, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
84 28 0.20
85 96 0.69
86 13 0.09
87 2 0.01
ACGTcount: A:0.15, C:0.32, G:0.36, T:0.17
Consensus pattern (85 bp):
GGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTCCCGAGGCT
CTCGCACGACCAAGGGCCTA
Found at i:26418392 original size:43 final size:43
Alignment explanation
Indices: 26418327--26418488 Score: 245
Period size: 43 Copynumber: 3.8 Consensus size: 43
26418317 CTGAACTCAT
* *
26418327 TCACCGGCATTA-CGCCTGCTAGGCTCGAAGCCCGATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCAATATTAAC
** *
26418369 TCACCAACATTATAGCCTGCTAGGCTCAAAGCCCAATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCAATATTAAC
* *
26418412 TCACCGGCATTATAGCCTGCTAGACTCGAGGCCCAATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCAATATTAAC
*
26418455 TCATCGGCATTATAGCCTGCTAGGCTCGAAGCCC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCC
26418489 CAAATAGTAC
Statistics
Matches: 106, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
42 10 0.09
43 96 0.91
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (43 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCAATATTAAC
Found at i:26425603 original size:27 final size:27
Alignment explanation
Indices: 26425573--26425748 Score: 183
Period size: 27 Copynumber: 6.5 Consensus size: 27
26425563 ATTGAGTCCA
* *
26425573 CACACTCAGTGCTATATAATCAACTCG
1 CACACTTAGTGCTACATAATCAACTCG
*
26425600 CACACTTAGTGCTACATAATCAAATCG
1 CACACTTAGTGCTACATAATCAACTCG
*
26425627 CACACTTAGTGCTACATAGTCAAACTCG
1 CACACTTAGTGCTACATAATC-AACTCG
** ** * *
26425655 CACACTTAGTGCCGCATGGTCAATTTG
1 CACACTTAGTGCTACATAATCAACTCG
* **
26425682 CACACTTAGTGC-ATCATATTCATTTCG
1 CACACTTAGTGCTA-CATAATCAACTCG
* * *
26425709 CACACTTAGTGCAACATAGTCAAATCG
1 CACACTTAGTGCTACATAATCAACTCG
26425736 CACACTTAGTGCT
1 CACACTTAGTGCT
26425749 GTACAATTTA
Statistics
Matches: 127, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (27 bp):
CACACTTAGTGCTACATAATCAACTCG
Found at i:26427478 original size:24 final size:24
Alignment explanation
Indices: 26427403--26427478 Score: 57
Period size: 24 Copynumber: 3.0 Consensus size: 24
26427393 AACCACTTTC
26427403 CGACTAGGGTCAATTTTGGGCTGT
1 CGACTAGGGTCAATTTTGGGCTGT
* * * *
26427427 C-ACAATTAAGGTGGAATTGTT-TGATGT
1 CGAC---TAGGGT-CAATT-TTGGGCTGT
26427454 CGACTAGGGTCAATTTTGGGCTGT
1 CGACTAGGGTCAATTTTGGGCTGT
26427478 C
1 C
26427479 ACAACTCTCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
23 4 0.11
24 10 0.27
25 5 0.14
26 5 0.14
27 9 0.24
28 4 0.11
ACGTcount: A:0.21, C:0.14, G:0.30, T:0.34
Consensus pattern (24 bp):
CGACTAGGGTCAATTTTGGGCTGT
Found at i:26433672 original size:27 final size:27
Alignment explanation
Indices: 26433642--26433819 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
26433632 ATATTGAGTC
* * * *
26433642 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
26433669 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
26433696 CGTACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
26433724 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
26433751 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
* *
26433778 CGCACACTTAGTGCAATATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26433805 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26433820 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:26433785 original size:82 final size:81
Alignment explanation
Indices: 26433663--26433818 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
26433653 TGCTATATAA
* * *
26433663 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGTACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26433728 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
26433745 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAATATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26433809 CACTTAGTGC
65 CACTTAGTGC
26433819 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 16 0.25
82 49 0.75
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26437609 original size:45 final size:45
Alignment explanation
Indices: 26437523--26437610 Score: 131
Period size: 45 Copynumber: 2.0 Consensus size: 45
26437513 TATGTGATCT
* * *
26437523 GAACTCATTGAGTTGTGGTCTGAGTTCATTATATATGTGACATCC
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATACATATGACATCC
* *
26437568 GAACTTATTGAGTTGTGGTCTGAGTTCGTGATACATATGACAT
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATACATATGACAT
26437611 ATGTTTTGGT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.25, C:0.14, G:0.24, T:0.38
Consensus pattern (45 bp):
GAACTCATTGAGTTGTGGTCTGAGTTCATGATACATATGACATCC
Found at i:26442272 original size:30 final size:29
Alignment explanation
Indices: 26442236--26442292 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
26442226 ATAGTATCGT
*
26442236 ATCTTGGGTTTCTTTATTCTGGGTTTCTCA
1 ATCTTGGATTTCTTTATTC-GGGTTTCTCA
*
26442266 ATCTTGGATTTCTTTATTCGGTTTTCT
1 ATCTTGGATTTCTTTATTCGGGTTTCT
26442293 TGTTATCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.11, C:0.16, G:0.18, T:0.56
Consensus pattern (29 bp):
ATCTTGGATTTCTTTATTCGGGTTTCTCA
Found at i:26447916 original size:18 final size:18
Alignment explanation
Indices: 26447893--26447927 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
26447883 CCCTTGTTTT
26447893 TCTTTTTAAATAAATGTG
1 TCTTTTTAAATAAATGTG
26447911 TCTTTTTAAATAAATGT
1 TCTTTTTAAATAAATGT
26447928 TTTAGTGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.06, G:0.09, T:0.51
Consensus pattern (18 bp):
TCTTTTTAAATAAATGTG
Found at i:26448972 original size:25 final size:26
Alignment explanation
Indices: 26448916--26448974 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
26448906 TTTTTCTCTT
*
26448916 AAATTTTAAATTTTATTTAATCATTT
1 AAATTTTAAATTTTATTTAATCATTC
* *
26448942 AAATTTTCAA-TTTATTTAATTATTC
1 AAATTTTAAATTTTATTTAATCATTC
*
26448967 ATATTTTA
1 AAATTTTA
26448975 TATTAATTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
25 19 0.68
26 9 0.32
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (26 bp):
AAATTTTAAATTTTATTTAATCATTC
Found at i:26450935 original size:46 final size:46
Alignment explanation
Indices: 26450868--26451031 Score: 165
Period size: 46 Copynumber: 3.5 Consensus size: 46
26450858 TTGTGTGCAG
**
26450868 GTGTAAGA-CATGTCTTTGACATGCATCGGCCTCAAGATGTAAGCCA
1 GTGTAAGACCATGTCTGGGACATGCATCGG-CTCAAGATGTAAGCCA
* * *
26450914 GTGTAAGA-CATGTCTGGGACATGCATCGGGTACGAGATGT--GTCA
1 GTGTAAGACCATGTCTGGGACATGCATCGGCT-CAAGATGTAAGCCA
* * * *
26450958 GTGTAAGACCATGTCTGGGACAAGGCATCGGCACACATATGTGAGAGCTA
1 GTGTAAGACCATGTCTGGGAC-ATGCATCGGCTCA-AGATGT-A-AGCCA
26451008 GTGTAAGACCATGTCTGGGACATG
1 GTGTAAGACCATGTCTGGGACATG
26451032 GTGTGAGCCT
Statistics
Matches: 97, Mismatches: 13, Indels: 13
0.79 0.11 0.11
Matches are distributed among these distances:
44 11 0.11
45 14 0.14
46 47 0.48
49 2 0.02
50 23 0.24
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
GTGTAAGACCATGTCTGGGACATGCATCGGCTCAAGATGTAAGCCA
Found at i:26463122 original size:21 final size:21
Alignment explanation
Indices: 26463096--26463138 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
26463086 GAAGGTATGT
26463096 TCTATTTCATCCGATTCAGCC
1 TCTATTTCATCCGATTCAGCC
26463117 TCTATTTCATCCGATTCAGCC
1 TCTATTTCATCCGATTCAGCC
26463138 T
1 T
26463139 TATGCCTAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.33, G:0.09, T:0.40
Consensus pattern (21 bp):
TCTATTTCATCCGATTCAGCC
Found at i:26465428 original size:22 final size:23
Alignment explanation
Indices: 26465403--26465447 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
26465393 AATTATTAAC
*
26465403 ATAATTAA-TTTTAATTAATTTT
1 ATAATAAATTTTTAATTAATTTT
*
26465425 ATAATAAATTTTTGATTAATTTT
1 ATAATAAATTTTTAATTAATTTT
26465448 GATTATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (23 bp):
ATAATAAATTTTTAATTAATTTT
Found at i:26483880 original size:11 final size:10
Alignment explanation
Indices: 26483852--26483885 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
26483842 CCAATTTGTG
26483852 AAAAAAAATA
1 AAAAAAAATA
*
26483862 AAATAAAATA
1 AAAAAAAATA
26483872 AAGAAAAAATA
1 AA-AAAAAATA
26483883 AAA
1 AAA
26483886 TAACACACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (10 bp):
AAAAAAAATA
Found at i:26485860 original size:49 final size:49
Alignment explanation
Indices: 26485788--26485964 Score: 203
Period size: 49 Copynumber: 3.6 Consensus size: 49
26485778 ATCTAGTATG
*
26485788 CATAGTAGCCTGCACTTAGTACTATACATGCGACCAATAATTTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATTTGGTACA
* * * * * **
26485837 CATAGTAGCCTGGACTTAGTACTACACACGTGATCACA-AGTTTCGGGTATG
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCA-ATAATTT--GGTACA
* * **
26485888 CATAGTAGCCTGCACGTAGTACTACACATGCGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATTTGGTACA
*
26485937 CGTAGTAGCCTGCACTTAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
26485965 CGTGACCTCA
Statistics
Matches: 103, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
49 65 0.63
50 2 0.02
51 36 0.35
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATTTGGTACA
Found at i:26485897 original size:100 final size:100
Alignment explanation
Indices: 26485783--26485969 Score: 311
Period size: 100 Copynumber: 1.9 Consensus size: 100
26485773 AAGCTATCTA
* * **
26485783 GTATGCATAGTAGCCTGCACTTAGTACTATACATGCGACCAATAATTTGGTACACATAGTAGCCT
1 GTATGCATAGTAGCCTGCACGTAGTACTACACATGCGACCAATAATCCGGTACACATAGTAGCCT
*
26485848 GGACTTAGTACTACACACGTGATCACAAGTTTCGG
66 GCACTTAGTACTACACACGTGATCACAAGTTTCGG
* *
26485883 GTATGCATAGTAGCCTGCACGTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCT
1 GTATGCATAGTAGCCTGCACGTAGTACTACACATGCGACCAATAATCCGGTACACATAGTAGCCT
26485948 GCACTTAGTACTACACACGTGA
66 GCACTTAGTACTACACACGTGA
26485970 CCTCACAATA
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 80 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.26
Consensus pattern (100 bp):
GTATGCATAGTAGCCTGCACGTAGTACTACACATGCGACCAATAATCCGGTACACATAGTAGCCT
GCACTTAGTACTACACACGTGATCACAAGTTTCGG
Found at i:26488471 original size:15 final size:15
Alignment explanation
Indices: 26488415--26488479 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
26488405 TAAAGATAAC
*
26488415 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
26488429 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
26488444 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
26488459 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
26488474 AAGAAA
1 AAGAAA
26488480 CCCATGATAC
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 11 0.26
15 29 0.67
16 3 0.07
ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:26488481 original size:30 final size:31
Alignment explanation
Indices: 26488415--26488483 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
26488405 TAAAGATAAC
*
26488415 AAGAAAACC-GAATAAAGAAATCCAAGATAG
1 AAGAAACCCAGAATAAAGAAATCCAAGATAG
26488445 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATAG
26488474 AAGAAACCCA
1 AAGAAACCCA
26488484 TGATACGATA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 9 0.26
30 26 0.74
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.09
Consensus pattern (31 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATAG
Found at i:26491537 original size:49 final size:49
Alignment explanation
Indices: 26491465--26491639 Score: 208
Period size: 49 Copynumber: 3.5 Consensus size: 49
26491455 CTAGTATGCA
**
26491465 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* * * * * ** *
26491514 TAGTAGCCTGGACTTAGTACTACACACGTGATCACAGGTT-TCGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-C-CA-ATTATCCGGTACACG
* *
26491565 TAGTAGCCTGCACGTAGTACTGCACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
26491614 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
26491640 CGTGACCTCA
Statistics
Matches: 101, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
48 2 0.02
49 61 0.60
50 2 0.02
51 34 0.34
52 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
Found at i:26491631 original size:100 final size:100
Alignment explanation
Indices: 26491458--26491644 Score: 329
Period size: 100 Copynumber: 1.9 Consensus size: 100
26491448 AAGCTATCTA
* **
26491458 GTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTTGGTACACGTAGTAGCCT
1 GTATGCATAGTAGCCTGCACGTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCT
*
26491523 GGACTTAGTACTACACACGTGATCACAGGTTTCGG
66 GCACTTAGTACTACACACGTGATCACAGGTTTCGG
*
26491558 GTATGCATAGTAGCCTGCACGTAGTACTGCACATGCGACCAATTATCCGGTACACGTAGTAGCCT
1 GTATGCATAGTAGCCTGCACGTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCT
26491623 GCACTTAGTACTACACACGTGA
66 GCACTTAGTACTACACACGTGA
26491645 CCTCACTATA
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (100 bp):
GTATGCATAGTAGCCTGCACGTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCT
GCACTTAGTACTACACACGTGATCACAGGTTTCGG
Found at i:26493899 original size:27 final size:27
Alignment explanation
Indices: 26493869--26494046 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26493859 ATATTGAGTC
* * * *
26493869 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
26493896 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26493923 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
26493951 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
26493978 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
26494005 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26494032 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26494047 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:26494008 original size:82 final size:81
Alignment explanation
Indices: 26493890--26494045 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26493880 TGCTATATAA
* *
26493890 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26493955 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26493972 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26494036 CACTTAGTGC
65 CACTTAGTGC
26494046 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26506220 original size:39 final size:39
Alignment explanation
Indices: 26506162--26506266 Score: 131
Period size: 39 Copynumber: 2.7 Consensus size: 39
26506152 TTCAGTGATG
* *
26506162 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* *
26506201 TATATTCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* * *
26506240 TATGTCCGGGC-TAAAGTCCCGCAGGCT
1 TATATCCGGACTTAAGGT-CCGCAGGCT
26506267 TCGAGCTAGT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 5 0.09
39 52 0.91
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
Found at i:26510150 original size:18 final size:19
Alignment explanation
Indices: 26510108--26510150 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
26510098 AATCATAGCA
26510108 AATAGGAAAGAATAAAGTG
1 AATAGGAAAGAATAAAGTG
26510127 AA-AGGAAAGAA-AAAG-G
1 AATAGGAAAGAATAAAGTG
26510143 ACATAGGA
1 A-ATAGGA
26510151 GCATAAAGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 2 0.09
17 5 0.23
18 13 0.59
19 2 0.09
ACGTcount: A:0.60, C:0.02, G:0.28, T:0.09
Consensus pattern (19 bp):
AATAGGAAAGAATAAAGTG
Found at i:26510599 original size:8 final size:8
Alignment explanation
Indices: 26510586--26510610 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
26510576 TGCAATTCAA
26510586 TTAAACAT
1 TTAAACAT
26510594 TTAAACAT
1 TTAAACAT
26510602 TTAAACAT
1 TTAAACAT
26510610 T
1 T
26510611 CAAAGCTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (8 bp):
TTAAACAT
Found at i:26529576 original size:28 final size:28
Alignment explanation
Indices: 26529513--26529666 Score: 238
Period size: 28 Copynumber: 5.5 Consensus size: 28
26529503 ATATTAAGTC
*
26529513 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
26529540 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
26529568 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
26529596 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
26529624 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
26529653 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26529667 CAATCTCATG
Statistics
Matches: 118, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 22 0.19
28 77 0.65
29 19 0.16
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:26536730 original size:75 final size:75
Alignment explanation
Indices: 26536604--26536750 Score: 267
Period size: 75 Copynumber: 2.0 Consensus size: 75
26536594 GGCCCTGTTC
26536604 CACAAGAGTTTAATTATCTCCTAACATACAGCTCATATGGTCGTTTCGTTTCGTCTATATGAAAG
1 CACAAGAGTTTAATTATCTCCTAACATACAGCTCATATGGTCGTTTCGTTTCGTCTATATGAAAG
26536669 TAGACTCTTT
66 TAGACTCTTT
* * *
26536679 CACAAGGGTTTAATTATCTCCTAACATACAGCTCATATGGTCGTTTTGTTTCTTCTATATGAAAG
1 CACAAGAGTTTAATTATCTCCTAACATACAGCTCATATGGTCGTTTCGTTTCGTCTATATGAAAG
26536744 TAGACTC
66 TAGACTC
26536751 ATCGAGCTTC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 69 1.00
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (75 bp):
CACAAGAGTTTAATTATCTCCTAACATACAGCTCATATGGTCGTTTCGTTTCGTCTATATGAAAG
TAGACTCTTT
Found at i:26537103 original size:69 final size:69
Alignment explanation
Indices: 26536992--26537127 Score: 254
Period size: 69 Copynumber: 2.0 Consensus size: 69
26536982 TGCCATATCT
26536992 TGAATTTTAACACCAAAAATAATCAACCATGACATATGGCATAAAAATCGAATAACCAAGACTTA
1 TGAATTTTAACACCAAAAATAATCAACCATGACATATGGCATAAAAATCGAATAACCAAGACTTA
26537057 CGCA
66 CGCA
* *
26537061 TGAATTTTGACACCAAAAATAATCAACCATGACATATGGCATAAAAATCGAATTACCAAGACTTA
1 TGAATTTTAACACCAAAAATAATCAACCATGACATATGGCATAAAAATCGAATAACCAAGACTTA
26537126 CG
66 CG
26537128 ACCTAACATT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 65 1.00
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.23
Consensus pattern (69 bp):
TGAATTTTAACACCAAAAATAATCAACCATGACATATGGCATAAAAATCGAATAACCAAGACTTA
CGCA
Found at i:26537880 original size:28 final size:27
Alignment explanation
Indices: 26537817--26537884 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
26537807 ATATTAAGTC
*
26537817 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
26537844 CGCACACTTAGTGCTATATAGTCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
26537872 CGCACACTTAGTG
1 CGCACACTTAGTG
26537885 TTGTACAATT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.55
28 17 0.45
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:26543501 original size:41 final size:41
Alignment explanation
Indices: 26543444--26543525 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
26543434 TCAGCCTTCT
**
26543444 TCTTCTCCTTTCCAAGTTCTTTTGCCTTGCAGGCTCGTTCG
1 TCTTCTCCTTTCCAAGTTCTTCCGCCTTGCAGGCTCGTTCG
26543485 TCTTCTCCTTTCCAAGTTCTTCCGCCTTGCAGGCTCGTTCG
1 TCTTCTCCTTTCCAAGTTCTTCCGCCTTGCAGGCTCGTTCG
26543526 ACTCGTGTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.07, C:0.34, G:0.17, T:0.41
Consensus pattern (41 bp):
TCTTCTCCTTTCCAAGTTCTTCCGCCTTGCAGGCTCGTTCG
Found at i:26544419 original size:49 final size:49
Alignment explanation
Indices: 26544360--26544454 Score: 181
Period size: 49 Copynumber: 1.9 Consensus size: 49
26544350 GACTCATACG
*
26544360 TGCTATGGTAGTCCTAGAACCGACTAAACCATAGCTCTGATACCAATCA
1 TGCTACGGTAGTCCTAGAACCGACTAAACCATAGCTCTGATACCAATCA
26544409 TGCTACGGTAGTCCTAGAACCGACTAAACCATAGCTCTGATACCAA
1 TGCTACGGTAGTCCTAGAACCGACTAAACCATAGCTCTGATACCAA
26544455 ATAAATTGTA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (49 bp):
TGCTACGGTAGTCCTAGAACCGACTAAACCATAGCTCTGATACCAATCA
Found at i:26545001 original size:76 final size:76
Alignment explanation
Indices: 26544875--26545026 Score: 268
Period size: 76 Copynumber: 2.0 Consensus size: 76
26544865 TGATTAATTT
* **
26544875 AGGGTGAATTTCTAAAGTTGGGACAGAGGATCCAGAAATTGCTCTGGCCCTGTTCCACAAGAGTT
1 AGGGTGAATTTCTAAAGTCGGGACAGAGGATCCAGAAACCGCTCTGGCCCTGTTCCACAAGAGTT
26544940 TAATTATCTCC
66 TAATTATCTCC
*
26544951 AGGGTGAATTTCTAAAGTCGGGACAGGGGATCCAGAAACCGCTCTGGCCCTGTTCCACAAGAGTT
1 AGGGTGAATTTCTAAAGTCGGGACAGAGGATCCAGAAACCGCTCTGGCCCTGTTCCACAAGAGTT
26545016 TAATTATCTCC
66 TAATTATCTCC
26545027 TAACATACAG
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
76 72 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (76 bp):
AGGGTGAATTTCTAAAGTCGGGACAGAGGATCCAGAAACCGCTCTGGCCCTGTTCCACAAGAGTT
TAATTATCTCC
Found at i:26558466 original size:16 final size:16
Alignment explanation
Indices: 26558445--26558475 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26558435 ATATATTTTC
*
26558445 ATTTGCATCATATATA
1 ATTTGCATCACATATA
26558461 ATTTGCATCACATAT
1 ATTTGCATCACATAT
26558476 CAAATAACCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.06, T:0.42
Consensus pattern (16 bp):
ATTTGCATCACATATA
Found at i:26558794 original size:43 final size:43
Alignment explanation
Indices: 26558627--26558783 Score: 176
Period size: 43 Copynumber: 3.7 Consensus size: 43
26558617 ATATCGTACA
* *
26558627 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATATCG
** * * *
26558670 ATG-CTGCTGTCCCAGACAGGGTCTTACATG-AATCAAATA-CC
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAATCAAATATCG
* * * *
26558711 ATGTCGATGTCCCAGACATGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATATCG
*
26558754 ATGCCAACGTCCTAGACATGGTCTTACACG
1 ATGCCAACGTCCCAGACATGGTCTTACACG
26558784 AAAACACATA
Statistics
Matches: 94, Mismatches: 16, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
41 24 0.26
42 20 0.21
43 50 0.53
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATATCG
Found at i:26567171 original size:40 final size:40
Alignment explanation
Indices: 26567139--26567530 Score: 579
Period size: 40 Copynumber: 9.8 Consensus size: 40
26567129 CCAGCATGAT
* * * * *
26567139 TGCTCTTTGGGACCTAGCCCGGATATAACACCAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
26567179 TGCTCTTCGGCG-TTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGG-GACTTAGCCCGGATATATCACTAGCACGAA
* * *
26567219 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
26567259 TGCTCTTCGGGATTTAACCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
26567299 TGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
26567339 TGCTCTTCGGGACTTAGCCCAGATATATGACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
26567379 TGCTCTTCGGGACTTAGCCCGGATATGTCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
26567419 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
26567459 TGCTCTTCGGGACTTAGCTCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
26567499 TGCTCTTGGGGACTTAGCCCAGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
26567531 CTCAATTCTC
Statistics
Matches: 315, Mismatches: 35, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
40 314 1.00
41 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:26567396 original size:23 final size:23
Alignment explanation
Indices: 26567370--26567476 Score: 58
Period size: 23 Copynumber: 5.2 Consensus size: 23
26567360 GATATATGAC
26567370 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
* * * *
26567393 TAGCCCGGAT-AT-GTC---AC-
1 TAGCACGAATGCTCTTCGGGACT
26567410 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
* * * *
26567433 TAGCCCGGAT-AT-ATC---AC-
1 TAGCACGAATGCTCTTCGGGACT
26567450 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
26567473 TAGC
1 TAGC
26567477 TCGGATATAT
Statistics
Matches: 56, Mismatches: 16, Indels: 24
0.58 0.17 0.25
Matches are distributed among these distances:
17 16 0.29
18 6 0.11
19 4 0.07
21 4 0.07
22 6 0.11
23 20 0.36
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (23 bp):
TAGCACGAATGCTCTTCGGGACT
Done.