Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56482370
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1659275 characters in sequence are not A, C, G, or T
File 88 of 172
Found at i:29408812 original size:28 final size:28
Alignment explanation
Indices: 29408780--29408849 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
29408770 ATAGTAAGTC
29408780 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
29408808 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
29408836 CGCACACTTAGTGC
1 CGCACACTTAGTGC
29408850 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:29415512 original size:66 final size:67
Alignment explanation
Indices: 29415383--29415512 Score: 165
Period size: 66 Copynumber: 1.9 Consensus size: 67
29415373 GAGATGTATC
*
29415383 CCATGTAGACAAGAGAGCTATGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTA---GAGAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
29415448 AGGACA
62 AGGACA
* * *
29415454 CCATGTAGACAAGAGAGCTA-CGAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTAGAGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
29415513 TTCACCATGT
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
66 24 0.44
67 9 0.17
68 1 0.02
71 20 0.37
ACGTcount: A:0.34, C:0.15, G:0.30, T:0.21
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTAGAGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:29423010 original size:66 final size:67
Alignment explanation
Indices: 29422881--29423010 Score: 174
Period size: 66 Copynumber: 1.9 Consensus size: 67
29422871 GGGATGTATC
*
29422881 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
29422946 AGGACA
62 AGGACA
* *
29422952 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
29423011 TTCACCATGT
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
66 24 0.44
67 9 0.16
68 1 0.02
71 21 0.38
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:29429723 original size:46 final size:47
Alignment explanation
Indices: 29429562--29429829 Score: 228
Period size: 46 Copynumber: 5.7 Consensus size: 47
29429552 AGGGTATAAT
* * * * *
29429562 GCCGATGCCATGTCCCAGACGTGGTCTTACACTGGCTCTCACATATCCAT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-ACATCTCGAG
** *
29429612 GATGATGGATGTCCCAGACATGTCTTACACTAG--C-ACATCTCGCA-
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTACATCTCG-AG
* * *
29429656 GCCGATGCATGTCCCAAACATGTCTTACACTGGCT-TATATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTACATCTCGAG
* * * *
29429702 GCCGATGCATGTCTCAGACATGTCTTACACTAGCTCT-CGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTACATCTCGAG
* * * * * *
29429748 GCCGATGCCATGTCCCAGATATGGTCTTACATTGGCTCT-GATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTACAT-CTCGAG
29429796 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
29429830 ATACACACAT
Statistics
Matches: 176, Mismatches: 33, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
44 34 0.19
45 2 0.01
46 63 0.36
47 26 0.15
48 33 0.19
49 13 0.07
50 5 0.03
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTACATCTCGAG
Found at i:29429804 original size:94 final size:95
Alignment explanation
Indices: 29429559--29429830 Score: 319
Period size: 94 Copynumber: 2.9 Consensus size: 95
29429549 CATAGGGTAT
* * * ** *
29429559 AATGCCGATGCCATGTCCCAGACGTGGTCTTACACTGGCTCTCACATATCCAT-GATGATGGATG
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-ATATAT-CGTGGCCGATGCATG
29429623 TCCCAGACATGTCTTACACTAGCACATCTCGC
64 TCCCAGACATGTCTTACACTAGCACATCTCGC
* * *
29429655 -A-GCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCT-TATATCTCGAGGCCGATGCATGTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTATATATCGTGGCCGATGCATGTC
* * *
29429715 TCAGACATGTCTTACACTAGCTC-TCGTCTC
66 CCAGACATGTCTTACACTAGCACATC-TCGC
* *
29429745 AATGCCGATGCCATGTCCCAGATATGGTCTTACATTGGCTCTGATA-AT-GTGGCCGATGCATGT
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-ATATATCGTGGCCGATGCATGT
29429808 CCCAGACATGTCTTACACTAGCA
65 CCCAGACATGTCTTACACTAGCA
29429831 TACACACATC
Statistics
Matches: 149, Mismatches: 19, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
89 3 0.02
90 38 0.26
91 2 0.01
92 21 0.14
93 24 0.16
94 55 0.37
95 3 0.02
96 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (95 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTATATATCGTGGCCGATGCATGTC
CCAGACATGTCTTACACTAGCACATCTCGC
Found at i:29431362 original size:42 final size:43
Alignment explanation
Indices: 29431252--29431366 Score: 128
Period size: 43 Copynumber: 2.7 Consensus size: 43
29431242 CAAACTCGTA
* * * *
29431252 CAATACCAACGTCCCAGACGTGGCCTTACATGTAATCAAATAT
1 CAATGCCAACGTCCCAAACGTGGTCTTACATGAAATCAAATAT
*
29431295 CAATGCC-ACTATCCCAAACAG-GGTCTTACATGAAATCAAATAT
1 CAATGCCAAC-GTCCCAAAC-GTGGTCTTACATGAAATCAAATAT
* *
29431338 -GATGCCAACGTCTCAAACGTGGTCTTACA
1 CAATGCCAACGTCCCAAACGTGGTCTTACA
29431367 CGTAAAACAT
Statistics
Matches: 60, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
41 1 0.02
42 23 0.38
43 35 0.58
44 1 0.02
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (43 bp):
CAATGCCAACGTCCCAAACGTGGTCTTACATGAAATCAAATAT
Found at i:29433320 original size:22 final size:23
Alignment explanation
Indices: 29433295--29433340 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
29433285 CAACCAAATC
29433295 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
29433317 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
29433340 A
1 A
29433341 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:29433346 original size:23 final size:23
Alignment explanation
Indices: 29433302--29433346 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
29433292 ATCAATTCAA
*
29433302 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
29433325 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
29433347 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:29439504 original size:22 final size:23
Alignment explanation
Indices: 29439479--29439524 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
29439469 CAACCAAATC
29439479 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
29439501 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
29439524 A
1 A
29439525 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:29439530 original size:23 final size:23
Alignment explanation
Indices: 29439486--29439530 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
29439476 ATCAATTCAA
*
29439486 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
29439509 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
29439531 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:29441252 original size:40 final size:40
Alignment explanation
Indices: 29441208--29441395 Score: 317
Period size: 40 Copynumber: 4.7 Consensus size: 40
29441198 GCTACTAGCT
29441208 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
29441248 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
29441288 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
29441328 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
29441367 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
29441396 CAATCCGAAT
Statistics
Matches: 140, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
38 1 0.01
39 34 0.24
40 104 0.74
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:29450434 original size:39 final size:39
Alignment explanation
Indices: 29450390--29450474 Score: 118
Period size: 40 Copynumber: 2.2 Consensus size: 39
29450380 CCTTCGGAGT
*
29450390 TTAGCCGGATATAGCT-ACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCGGATATAG-TAACTAGCACAAATGCCTTCGGGAC
* *
29450429 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAG-CCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
29450469 TTAGCC
1 TTAGCC
29450475 CGGNNNNNNN
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
39 7 0.17
40 34 0.83
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
TTAGCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
Found at i:29468523 original size:48 final size:46
Alignment explanation
Indices: 29468420--29468544 Score: 148
Period size: 48 Copynumber: 2.7 Consensus size: 46
29468410 AGATGTAAGC
* * *
29468420 CAGTATAAGA-CATGTCTGGGACAT-GCATCGGTTATGAGATGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGATATGAGAGGTGT
*
29468464 CACTGTAAGACCATGTCTGGGACATGGCATCGGCACATAT-AGAGGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGG---ATATGAGAGGTGT
* *
29468512 CAGTGTAAGACCATGTCTGAGACATGGAATCGG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGG
29468545 TACAAATATG
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
44 8 0.12
45 14 0.20
46 7 0.10
48 37 0.54
49 3 0.04
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGATATGAGAGGTGT
Found at i:29468586 original size:50 final size:48
Alignment explanation
Indices: 29468462--29468588 Score: 141
Period size: 48 Copynumber: 2.6 Consensus size: 48
29468452 TATGAGATGT
* * *
29468462 GTCACTGTAAGACCATGTCTGGGACATGGCATCGGCACATATAGAGGT
1 GTCACTGTAAGACCATGTCTGGGACATGGAATCGGCACAAATAGAGGA
* * * *
29468510 GTCAGTGTAAGACCATGTCTGAGACATGGAATCGGTACAAATATGTGAGA
1 GTCACTGTAAGACCATGTCTGGGACATGGAATCGGCACAAATA-GAG-GA
29468560 G-CTACTGTAAGACCATGT-TCGGGACATGG
1 GTC-ACTGTAAGACCATGTCT-GGGACATGG
29468589 TGTTGGCTTC
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
48 38 0.58
49 4 0.06
50 24 0.36
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (48 bp):
GTCACTGTAAGACCATGTCTGGGACATGGAATCGGCACAAATAGAGGA
Found at i:29469812 original size:21 final size:20
Alignment explanation
Indices: 29469786--29469825 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 20
29469776 GTTATAATGA
29469786 CCACACGGGTGTGTTGCCCTT
1 CCACACGGGTGTG-TGCCCTT
29469807 CCACACGGGTGTGTGCCCT
1 CCACACGGGTGTGTGCCCT
29469826 GTTTTAAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.10, C:0.35, G:0.30, T:0.25
Consensus pattern (20 bp):
CCACACGGGTGTGTGCCCTT
Found at i:29480032 original size:51 final size:51
Alignment explanation
Indices: 29479977--29480074 Score: 126
Period size: 51 Copynumber: 1.9 Consensus size: 51
29479967 CTTGTAGTGA
* *
29479977 AAGCTACCTTATT-CACAAAGTGGCCTTCACATAGTACCACACTTGTGACCC
1 AAGCTACCTT-TTACACAAAGTGGCCTGCACATAGTACCACACATGTGACCC
** * *
29480028 AAGCTATGTTTTACACATAGTGGCCTGCACTTAGTACCACACATGTG
1 AAGCTACCTTTTACACAAAGTGGCCTGCACATAGTACCACACATGTG
29480075 TTCGAAGCTA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
50 2 0.05
51 38 0.95
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (51 bp):
AAGCTACCTTTTACACAAAGTGGCCTGCACATAGTACCACACATGTGACCC
Found at i:29480083 original size:51 final size:51
Alignment explanation
Indices: 29479990--29480123 Score: 144
Period size: 51 Copynumber: 2.6 Consensus size: 51
29479980 CTACCTTATT
* * * * **
29479990 CACAAAGTGGCCTTCACATAGTACCACACTTGTGACCCAAGCTAT-GTTTTA
1 CACATAGTGGCCTGCACTTAGTACCACACATGTGACCCAAGCTATCG-GGTA
** *
29480041 CACATAGTGGCCTGCACTTAGTACCACACATGTGTTCGAAGCTATCGGGTA
1 CACATAGTGGCCTGCACTTAGTACCACACATGTGACCCAAGCTATCGGGTA
* * *
29480092 CGCATAGTAGCCTGCACTTAGTACTACACATG
1 CACATAGTGGCCTGCACTTAGTACCACACATG
29480124 CTACCTAACC
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
51 69 0.99
52 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (51 bp):
CACATAGTGGCCTGCACTTAGTACCACACATGTGACCCAAGCTATCGGGTA
Found at i:29484601 original size:25 final size:25
Alignment explanation
Indices: 29484572--29484628 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
29484562 TACCCAGAAT
29484572 AACATCAAAATCATCAAATGGTAAC
1 AACATCAAAATCATCAAATGGTAAC
*
29484597 AACATCAAACTCATCAAATGGTAAC
1 AACATCAAAATCATCAAATGGTAAC
29484622 AACATCA
1 AACATCA
29484629 GATTGTCAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.51, C:0.23, G:0.07, T:0.19
Consensus pattern (25 bp):
AACATCAAAATCATCAAATGGTAAC
Found at i:29487437 original size:13 final size:13
Alignment explanation
Indices: 29487419--29487443 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
29487409 TAATGGTATA
29487419 TTGAATCCATGAT
1 TTGAATCCATGAT
29487432 TTGAATCCATGA
1 TTGAATCCATGA
29487444 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:29492047 original size:27 final size:26
Alignment explanation
Indices: 29491999--29492058 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
29491989 GCGAGGCTGC
*
29491999 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* **
29492026 CAGATATTGTGGCTCAGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
29492052 CAGATAT
1 CAGATAT
29492059 AGATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:29492063 original size:32 final size:33
Alignment explanation
Indices: 29492020--29492083 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
29492010 ACGAAGTCAC
**
29492020 CAGATACAGATAT-TGTGGCTCAGCCACCAGAA
1 CAGATACAGATATATGTGGCGAAGCCACCAGAA
*
29492052 CAGATATAGATATATGTGGCGAAGCCACCAGA
1 CAGATACAGATATATGTGGCGAAGCCACCAGA
29492084 TTGCAGCGAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 12 0.43
33 16 0.57
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (33 bp):
CAGATACAGATATATGTGGCGAAGCCACCAGAA
Found at i:29492833 original size:27 final size:27
Alignment explanation
Indices: 29492802--29492934 Score: 178
Period size: 27 Copynumber: 4.9 Consensus size: 27
29492792 GGGCAAAATT
* * *
29492802 GTAATTTTACCCCACAAGGGTATATCG
1 GTAATTCTACCCTACAAGGGTATTTCG
* *
29492829 ATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
*
29492856 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
* *
29492883 GTAATTCTATCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCG
29492910 GTAATTCTACCCTA-AAGGGGTATTT
1 GTAATTCTACCCTACAA-GGGTATTT
29492935 TAGTATTTCT
Statistics
Matches: 93, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 2 0.02
27 91 0.98
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCG
Found at i:29499562 original size:27 final size:26
Alignment explanation
Indices: 29499514--29499573 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
29499504 GCGAGGCTGC
*
29499514 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
29499541 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
29499567 CAGATAT
1 CAGATAT
29499574 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:29499618 original size:71 final size:67
Alignment explanation
Indices: 29499541--29499682 Score: 194
Period size: 67 Copynumber: 2.1 Consensus size: 67
29499531 TCACCAGATA
* * *
29499541 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCAAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCAAAGCCACCAGATTGCAGCGA
29499606 GGCTGC
62 GGCTGC
* * *
29499612 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCAAAGCCACCAGATTGCAGCGAGGCT
29499677 GC
66 GC
29499679 CAGA
1 CAGA
29499683 ACGCTTCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
67 40 0.62
71 25 0.38
ACGTcount: A:0.31, C:0.23, G:0.28, T:0.18
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCAAAGCCACCAGATTGCAGCGAGGCT
GC
Found at i:29499660 original size:27 final size:26
Alignment explanation
Indices: 29499612--29499663 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
29499602 GCGAGGCTGC
*
29499612 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
29499638 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
29499664 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:29500353 original size:26 final size:27
Alignment explanation
Indices: 29500314--29500458 Score: 157
Period size: 27 Copynumber: 5.4 Consensus size: 27
29500304 GGGGCAAAAT
* * * *
29500314 GGTAATTTTTCCCTAAAAGGGT-TCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
29500340 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
29500367 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
29500394 GGTAATTCTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
29500421 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
29500448 AGTAATTCTAC
1 GGTAATTCTAC
29500459 AACTTATCCA
Statistics
Matches: 99, Mismatches: 19, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
26 18 0.18
27 81 0.82
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:29500380 original size:27 final size:27
Alignment explanation
Indices: 29500342--29500446 Score: 165
Period size: 27 Copynumber: 3.9 Consensus size: 27
29500332 GGGTTCTCGG
29500342 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
* * *
29500369 TATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
* *
29500396 TAATTCTATCCTATAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
29500423 TAATTCTACCCTACAGGGGTATTT
1 TAATTCTACCCTACAGGGGTATTT
29500447 TAGTAATTCT
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:29500414 original size:54 final size:54
Alignment explanation
Indices: 29500324--29500458 Score: 191
Period size: 54 Copynumber: 2.5 Consensus size: 54
29500314 GGTAATTTTT
* * *
29500324 CCCTAAAAGGGT-TCTCGGTAATTCTACCCTACAGGGGTATTTCGATATTTCTA
1 CCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTA
* *
29500377 CCCTACAAGGGTATTTCGGTAATTCTATCCTATAGGGGTATTTCGATAATTCTA
1 CCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTA
* **
29500431 CCCTACAGGGGTATTTTAGTAATTCTAC
1 CCCTACAAGGGTATTTCGGTAATTCTAC
29500459 AACTTATCCA
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
53 11 0.15
54 61 0.85
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (54 bp):
CCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTA
Found at i:29502642 original size:50 final size:50
Alignment explanation
Indices: 29502570--29502701 Score: 142
Period size: 52 Copynumber: 2.6 Consensus size: 50
29502560 ATCAGGTACG
* * *
29502570 CATAGTAGTCTGCACTTAGTACTACACATGCGACCT-AACCA-TCTAGTACA
1 CATAGTAGCCTACACTTAGTACTACACATGCGA-CTAAACCATTCTA-AACA
* * * *
29502620 CGTAGTAGCCTACACTTAGTACTACACACGTGACTGAAAACCATTTTAAACA
1 CATAGTAGCCTACACTTAGTACTACACATGCGACT--AAACCATTCTAAACA
*
29502672 CATAGTAGCCTACACATAGTACTACACATG
1 CATAGTAGCCTACACTTAGTACTACACATG
29502702 TGTTCTCACA
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
49 2 0.03
50 28 0.41
52 35 0.51
53 3 0.04
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.25
Consensus pattern (50 bp):
CATAGTAGCCTACACTTAGTACTACACATGCGACTAAACCATTCTAAACA
Found at i:29526606 original size:15 final size:15
Alignment explanation
Indices: 29526582--29526613 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
29526572 TATGCATGCA
*
29526582 AAATATAAAAGACAT
1 AAATACAAAAGACAT
29526597 AAATACAAAAGACAT
1 AAATACAAAAGACAT
29526612 AA
1 AA
29526614 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:29528280 original size:27 final size:27
Alignment explanation
Indices: 29528205--29528281 Score: 109
Period size: 27 Copynumber: 2.9 Consensus size: 27
29528195 TGCATACACA
* *
29528205 ACATAAGGGCAAAACAATCATCTTACC
1 ACATAAGGGCAAAATAATCATTTTACC
* *
29528232 ATATAAGGGCAAAATAGTCATTTTACC
1 ACATAAGGGCAAAATAATCATTTTACC
*
29528259 ACATAAGGGAAAAATAATCATTT
1 ACATAAGGGCAAAATAATCATTT
29528282 AATTAAATTG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.45, C:0.17, G:0.13, T:0.25
Consensus pattern (27 bp):
ACATAAGGGCAAAATAATCATTTTACC
Found at i:29533920 original size:47 final size:48
Alignment explanation
Indices: 29533849--29534068 Score: 215
Period size: 47 Copynumber: 4.7 Consensus size: 48
29533839 TGGGTAAGGT
* *
29533849 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTTACATCTC-AA
1 GCCGATGACATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAA
* * *
29533896 GTCGATGACATGTCCCAGACATGGTCTTACACTGAC-TATCATCTCGTA
1 GCCGATGACATGTCCCAGACATGGTCTTACACTGGCTTA-CATCTCGAA
* *
29533944 GCCGAT-ACATGTCCCAGACAT-ATCTTACACTGGCTTA-AGTCTCGAG
1 GCCGATGACATGTCCCAGACATGGTCTTACACTGGCTTACA-TCTCGAA
* * *
29533990 GCCGATG-CATGTCCCAGATAT-GTCTCACACTAGCTCT-CATCTC-AA
1 GCCGATGACATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCGAA
** * *
29534035 TGTTGATGCCATGTCCTAGACATGGTCTTACACT
1 -GCCGATGACATGTCCCAGACATGGTCTTACACT
29534069 TGCTCCAATA
Statistics
Matches: 143, Mismatches: 20, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
45 2 0.01
46 57 0.40
47 69 0.48
48 15 0.10
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
GCCGATGACATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAA
Found at i:29534110 original size:140 final size:141
Alignment explanation
Indices: 29533849--29534114 Score: 328
Period size: 140 Copynumber: 1.9 Consensus size: 141
29533839 TGGGTAAGGT
* * *
29533849 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTTACATCTCAAGTCGATGACATGTCCCAG
1 GCCGATGCCATGTCCCAGACATGGTCTCACACTAGCTTACATCTCAAGTCGATGACATGTCCCAG
* * *
29533914 ACATGGTCTTACACTGACTATCATCTCGTAGCCGATACATGTCCCAGACATATCTTACACTGGCT
66 ACATGGTCTTACACTGACTACCATATCGTAGCCAATACATGTCCCAGACATATCTTACACTGGCT
29533979 TAAGTCTCGAG
131 TAAGTCTCGAG
* * * *
29533990 GCCGATG-CATGTCCCAGATAT-GTCTCACACTAGCTCT-CATCTCAATGTTGATGCCATGTCCT
1 GCCGATGCCATGTCCCAGACATGGTCTCACACTAGCT-TACATCTCAA-GTCGATGACATGTCCC
* * *
29534052 AGACATGGTCTTACACTTG-CT-CCAATAAT-GTGGCCAATGCATGTCCCAGACATGTCTTACAC
64 AGACATGGTCTTACAC-TGACTACC-AT-ATCGTAGCCAATACATGTCCCAGACATATCTTACAC
29534114 T
126 T
29534115 AGCCAACAAC
Statistics
Matches: 107, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
139 21 0.20
140 76 0.71
141 10 0.09
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (141 bp):
GCCGATGCCATGTCCCAGACATGGTCTCACACTAGCTTACATCTCAAGTCGATGACATGTCCCAG
ACATGGTCTTACACTGACTACCATATCGTAGCCAATACATGTCCCAGACATATCTTACACTGGCT
TAAGTCTCGAG
Found at i:29543952 original size:52 final size:51
Alignment explanation
Indices: 29543821--29543952 Score: 185
Period size: 50 Copynumber: 2.6 Consensus size: 51
29543811 ATGTGTTTTG
* *
29543821 CATTAAATAAAGTCTTGCATTATGTAACTCTCATGTTAGTTAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCTCATGTTAGTTAAGTTTGCAT
* * * *
29543872 -AATAAATTATGACATGCTTTATGTAACTCTCATGTTAGTTAAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCTCATGTTAGTT-AAGTTTGCAT
*
29543923 CATTAAATTAAGTCATGCATTAAGTAACTC
1 CATTAAATTAAGTCATGCATTATGTAACTC
29543953 ATTTGTTCAT
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
50 34 0.50
51 10 0.15
52 24 0.35
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (51 bp):
CATTAAATTAAGTCATGCATTATGTAACTCTCATGTTAGTTAAGTTTGCAT
Found at i:29545536 original size:29 final size:28
Alignment explanation
Indices: 29545469--29545543 Score: 96
Period size: 28 Copynumber: 2.6 Consensus size: 28
29545459 CAAGTCTACA
* * *
29545469 CACATGCATACGGCCCACTAGGCCCAAT
1 CACATTCATATGGCCCATTAGGCCCAAT
*
29545497 CTCATTCATATGGCCCATTAGGCCCAAAT
1 CACATTCATATGGCCCATTAGGCCC-AAT
*
29545526 CACATTCATATTGCCCAT
1 CACATTCATATGGCCCAT
29545544 CTGGACCGAA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
28 21 0.52
29 19 0.47
ACGTcount: A:0.28, C:0.35, G:0.13, T:0.24
Consensus pattern (28 bp):
CACATTCATATGGCCCATTAGGCCCAAT
Found at i:29545555 original size:29 final size:29
Alignment explanation
Indices: 29545469--29545543 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
29545459 CAAGTCTACA
* * * *
29545469 CACATGCATACGGCCCACTAGG-CCCAAT
1 CACATTCATATGGCCCATTAGGACCAAAT
* *
29545497 CTCATTCATATGGCCCATTAGGCCCAAAT
1 CACATTCATATGGCCCATTAGGACCAAAT
*
29545526 CACATTCATATTGCCCAT
1 CACATTCATATGGCCCAT
29545544 CTGGACCGAA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
28 18 0.46
29 21 0.54
ACGTcount: A:0.28, C:0.35, G:0.13, T:0.24
Consensus pattern (29 bp):
CACATTCATATGGCCCATTAGGACCAAAT
Found at i:29549320 original size:28 final size:29
Alignment explanation
Indices: 29549277--29549368 Score: 91
Period size: 29 Copynumber: 3.2 Consensus size: 29
29549267 CAAGTCTACA
* * *
29549277 CACATGCATATAGCCCACTAGGCCC-AAT
1 CACATTCATATGGCCCACTAAGCCCAAAT
* *
29549305 CTCATTCATATGGCCCATTAAGCCCAAAT
1 CACATTCATATGGCCCACTAAGCCCAAAT
* *
29549334 CACATTCATATGGCTCATCT-AGCCCGAAT
1 CACATTCATATGGCCCA-CTAAGCCCAAAT
29549363 CA-ATTC
1 CACATTC
29549369 CAAGCCATGT
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
28 24 0.45
29 28 0.53
30 1 0.02
ACGTcount: A:0.30, C:0.33, G:0.12, T:0.25
Consensus pattern (29 bp):
CACATTCATATGGCCCACTAAGCCCAAAT
Found at i:29579643 original size:29 final size:29
Alignment explanation
Indices: 29579610--29579709 Score: 141
Period size: 29 Copynumber: 3.5 Consensus size: 29
29579600 CATTGAGCCT
*
29579610 AATCATATTCATATGGCCCATTAGGCCCA
1 AATCACATTCATATGGCCCATTAGGCCCA
*
29579639 AATCACCTGT-ATATGGCCCATTAGGCCCA
1 AATCACAT-TCATATGGCCCATTAGGCCCA
*
29579668 AATCACATTTATATGGCCCATTAGGCCC-
1 AATCACATTCATATGGCCCATTAGGCCCA
*
29579696 AGTCACATTCATAT
1 AATCACATTCATAT
29579710 TCATGCTCAC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
28 13 0.20
29 50 0.78
30 1 0.02
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (29 bp):
AATCACATTCATATGGCCCATTAGGCCCA
Found at i:29581233 original size:17 final size:16
Alignment explanation
Indices: 29581211--29581249 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
29581201 ATAAAGAAAG
29581211 TTTGGGATTTCAAGATT
1 TTTGGG-TTTCAAGATT
**
29581228 TTTGGGTTTCGGGATT
1 TTTGGGTTTCAAGATT
29581244 TTTGGG
1 TTTGGG
29581250 GTGTTACATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.13, C:0.05, G:0.33, T:0.49
Consensus pattern (16 bp):
TTTGGGTTTCAAGATT
Found at i:29582106 original size:14 final size:13
Alignment explanation
Indices: 29582086--29582122 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
29582076 AATACTTGAT
29582086 TTGTTCTTAATTA
1 TTGTTCTTAATTA
29582099 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
29582113 TTGTT-TTAAT
1 TTGTTCTTAAT
29582123 ATTCCAAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 13 0.57
ACGTcount: A:0.22, C:0.05, G:0.11, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:29585833 original size:40 final size:40
Alignment explanation
Indices: 29585735--29585997 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
29585725 TCCTCGTTCA
* * * ** *
29585735 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
29585774 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
29585814 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
29585854 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
29585894 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
29585934 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
29585974 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
29585998 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:29593783 original size:40 final size:40
Alignment explanation
Indices: 29593685--29593947 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
29593675 TCCTCGTTCA
* * * * *
29593685 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
29593724 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
29593764 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
29593804 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
29593844 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
29593884 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
29593924 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
29593948 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:29599268 original size:20 final size:20
Alignment explanation
Indices: 29599245--29599283 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
29599235 AAGACTTCAC
* *
29599245 TTTATTTTTATTTTTATTTG
1 TTTACTTTTATCTTTATTTG
29599265 TTTACTTTTATCTTTATTT
1 TTTACTTTTATCTTTATTT
29599284 ACCTTTTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.77
Consensus pattern (20 bp):
TTTACTTTTATCTTTATTTG
Found at i:29615004 original size:6 final size:7
Alignment explanation
Indices: 29614988--29615012 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
29614978 CTAAAAGTAT
29614988 AAAATTA
1 AAAATTA
29614995 AAAATTA
1 AAAATTA
29615002 AAAATTA
1 AAAATTA
29615009 AAAA
1 AAAA
29615013 GTAGTTTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (7 bp):
AAAATTA
Found at i:29626976 original size:49 final size:49
Alignment explanation
Indices: 29626912--29627044 Score: 176
Period size: 51 Copynumber: 2.7 Consensus size: 49
29626902 CTGGTACGCA
* *
29626912 TAGTAGCCTGCACTTAGTGCTACACATGCGACCAATAATCGGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCGGGTACACG
* * * ** *
29626961 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCG
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAATAATCGGGTACACG
29627012 TAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC
29627045 TCACAATAGA
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
49 29 0.40
50 2 0.03
51 41 0.57
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCGGGTACACG
Found at i:29629096 original size:15 final size:15
Alignment explanation
Indices: 29629073--29629117 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
29629063 AAGAAAATCG
29629073 AATAAAGAAATCCAA
1 AATAAAGAAATCCAA
* *
29629088 AATAGAGAAA-CCTAT
1 AATAAAGAAATCC-AA
29629103 AATAAAGAAATCCAA
1 AATAAAGAAATCCAA
29629118 GATACGATAC
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
14 2 0.08
15 20 0.83
16 2 0.08
ACGTcount: A:0.62, C:0.13, G:0.09, T:0.16
Consensus pattern (15 bp):
AATAAAGAAATCCAA
Found at i:29631502 original size:49 final size:49
Alignment explanation
Indices: 29631444--29631633 Score: 209
Period size: 49 Copynumber: 3.8 Consensus size: 49
29631434 TAGCTGAAGC
* *
29631444 TATCTGGTACGCATAATAGCCTGCACTTAGTACTACACATGAGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGAGACCAAT
* ** * * *
29631493 AATCTGGTACATGTAGTAGCCTGCACTTAGTAATATACATGTGATCACAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGAGA-C-CAAT
* * * *
29631544 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGAGACCAAT
* * * * *
29631593 TATCCGATACACGTAGTAACCAGCACTTAGTACTACACATG
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATG
29631634 TGAGCTCACA
Statistics
Matches: 115, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
49 74 0.64
50 2 0.02
51 39 0.34
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGAGACCAAT
Found at i:29631571 original size:100 final size:101
Alignment explanation
Indices: 29631449--29631645 Score: 288
Period size: 100 Copynumber: 2.0 Consensus size: 101
29631439 GAAGCTATCT
* * * *
29631449 GGTACGCATAATAGCCTGCACTTAGTACTACACATGAGACCAATAATCTGGTACATGTAGTAGCC
1 GGTACGCATAATAGCCTGCACTTAGTACTACACATGAGACCAATAATCCGATACACGTAGTAACC
* *
29631514 TGCACTTAGTAATATACATGTGA-TCACAATTTTCG
66 AGCACTTAGTAATACACATGTGACTCACAATTTTCG
* * *
29631549 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGATACACGTAGTAACC
1 GGTACGCATAATAGCCTGCACTTAGTACTACACATGAGACCAATAATCCGATACACGTAGTAACC
*
29631614 AGCACTTAGTACTACACATGTGAGCTCACAAT
66 AGCACTTAGTAATACACATGTGA-CTCACAAT
29631646 AGTTTATTTG
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
100 78 0.92
102 7 0.08
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (101 bp):
GGTACGCATAATAGCCTGCACTTAGTACTACACATGAGACCAATAATCCGATACACGTAGTAACC
AGCACTTAGTAATACACATGTGACTCACAATTTTCG
Found at i:29633886 original size:11 final size:11
Alignment explanation
Indices: 29633870--29633894 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
29633860 ATTTTGTCCC
29633870 TTTTTGGCTCA
1 TTTTTGGCTCA
29633881 TTTTTGGCTCA
1 TTTTTGGCTCA
29633892 TTT
1 TTT
29633895 CCCTCTCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.16, G:0.16, T:0.60
Consensus pattern (11 bp):
TTTTTGGCTCA
Found at i:29636471 original size:46 final size:46
Alignment explanation
Indices: 29636421--29636510 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 46
29636411 TGGTTGAGCA
* * *
29636421 TCCGAGCTCGTTGAGTTGAGTTCGAATTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACCTATGGATGCGAATG
*
29636467 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAA
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACCTATGGATGCGAA
29636511 CGATGGTAAG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAATTCACCTATGGATGCGAATG
Found at i:29639747 original size:22 final size:22
Alignment explanation
Indices: 29639719--29639837 Score: 66
Period size: 22 Copynumber: 5.1 Consensus size: 22
29639709 GTTCACATTC
29639719 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
29639741 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
29639765 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
29639788 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
29639812 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
29639835 ATC
1 ATC
29639838 TCATATATAC
Statistics
Matches: 71, Mismatches: 12, Indels: 28
0.64 0.11 0.25
Matches are distributed among these distances:
22 23 0.32
23 14 0.20
24 14 0.20
25 20 0.28
ACGTcount: A:0.24, C:0.29, G:0.13, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:29639750 original size:47 final size:47
Alignment explanation
Indices: 29639681--29639866 Score: 327
Period size: 47 Copynumber: 4.0 Consensus size: 47
29639671 NNNNNNNNNN
*
29639681 GCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
29639728 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
29639775 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * **
29639822 GCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
29639867 AAAATCCTAA
Statistics
Matches: 134, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.34
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:29639898 original size:94 final size:91
Alignment explanation
Indices: 29639688--29639887 Score: 235
Period size: 94 Copynumber: 2.2 Consensus size: 91
29639678 NNNGCCATTC
* * *
29639688 TGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATG
1 TGCCTAATCAAATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
** ** *
29639753 CATGTTCACATTCATCACATTGGCCAT
66 CACATTCACATTCATCACATT-GAAAA
* * *
29639780 TCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATA
1 T--GCCTAATCAAATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
29639845 TACACATTCACATTCATCACA-T-AAAA
64 TACACATTCACATTCATCACATTGAAAA
29639871 T-CCTAAATCAAAATATA
1 TGCCT-AATC-AAATATA
29639888 AATTTTCATG
Statistics
Matches: 95, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
88 3 0.03
89 3 0.03
90 6 0.06
91 2 0.02
92 1 0.01
93 1 0.01
94 79 0.83
ACGTcount: A:0.30, C:0.27, G:0.10, T:0.34
Consensus pattern (91 bp):
TGCCTAATCAAATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
CACATTCACATTCATCACATTGAAAA
Found at i:29647062 original size:33 final size:34
Alignment explanation
Indices: 29646994--29647063 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
29646984 GTGGCAATAA
* * *
29646994 CAGTGTGGGCCTTAGCCCATTACAATAACAGTAT
1 CAGTATGGGCCTTAGCCCAATACAAGAACAGTAT
29647028 CAGTATGGGCCTTAGCCCAA-ATC-AGAACAGTAT
1 CAGTATGGGCCTTAGCCCAATA-CAAGAACAGTAT
29647061 CAG
1 CAG
29647064 AGATGCAAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
33 13 0.41
34 19 0.59
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.23
Consensus pattern (34 bp):
CAGTATGGGCCTTAGCCCAATACAAGAACAGTAT
Found at i:29652549 original size:28 final size:28
Alignment explanation
Indices: 29652517--29652639 Score: 165
Period size: 28 Copynumber: 4.4 Consensus size: 28
29652507 TCGATATTTT
*
29652517 GCACACTAAGTGCCATACCCAATGTCTC
1 GCACACTAAGTGCCATACTCAATGTCTC
** *
29652545 GCACACTAAGTGTTATATTCAATGTCTC
1 GCACACTAAGTGCCATACTCAATGTCTC
*
29652573 GCACACTAAGTGCCATGCTCAATGTCTC
1 GCACACTAAGTGCCATACTCAATGTCTC
* * * *
29652601 ACACACTAAGTGCCACAATCAATGTATC
1 GCACACTAAGTGCCATACTCAATGTCTC
29652629 GCACACTAAGT
1 GCACACTAAGT
29652640 TCCGCACATA
Statistics
Matches: 81, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 81 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (28 bp):
GCACACTAAGTGCCATACTCAATGTCTC
Found at i:29652692 original size:40 final size:40
Alignment explanation
Indices: 29652648--29652729 Score: 92
Period size: 40 Copynumber: 2.0 Consensus size: 40
29652638 GTTCCGCACA
* *
29652648 TAGCCAAAACTATCTCAAATCGCACACTAAGTGCCAAATT
1 TAGCCAAAACTATATCAAACCGCACACTAAGTGCCAAATT
* * ** * *
29652688 TAGCCGAAGCTATATTGAACCGCACATTAAGTGCCACATT
1 TAGCCAAAACTATATCAAACCGCACACTAAGTGCCAAATT
29652728 TA
1 TA
29652730 ACTGATATGT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.37, C:0.26, G:0.13, T:0.24
Consensus pattern (40 bp):
TAGCCAAAACTATATCAAACCGCACACTAAGTGCCAAATT
Found at i:29672059 original size:29 final size:29
Alignment explanation
Indices: 29672012--29672193 Score: 271
Period size: 29 Copynumber: 6.3 Consensus size: 29
29672002 CATGAGATTG
* * * *
29672012 GCACTAAGTGTGCGGGTTTAAAT-TGCATA
1 GCACTAAGTGTGCGAGTTTGATTATGTA-A
* *
29672041 GCACTAAGTGTGCAAGTTTGATTATAT-A
1 GCACTAAGTGTGCGAGTTTGATTATGTAA
29672069 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATGTAA
29672098 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATGTAA
29672127 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATGTAA
*
29672156 GCACTAAGTGTGCGAGTTTGATTATATAA
1 GCACTAAGTGTGCGAGTTTGATTATGTAA
29672185 -CACTAAGTG
1 GCACTAAGTG
29672194 CGCGGACTTA
Statistics
Matches: 142, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
28 35 0.25
29 106 0.75
30 1 0.01
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.34
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTGATTATGTAA
Found at i:29680193 original size:28 final size:28
Alignment explanation
Indices: 29680127--29680254 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
29680117 CATGAGATTG
* * **
29680127 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
29680156 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
29680184 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
29680213 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
29680241 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
29680255 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:29680216 original size:57 final size:57
Alignment explanation
Indices: 29680127--29680254 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
29680117 CATGAGATTG
*
29680127 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
29680184 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
29680241 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
29680255 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:29686512 original size:13 final size:13
Alignment explanation
Indices: 29686494--29686522 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
29686484 GGTTATTTAT
29686494 TAAACTAATTAAC
1 TAAACTAATTAAC
29686507 TAAACTAATTAAC
1 TAAACTAATTAAC
29686520 TAA
1 TAA
29686523 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:29696693 original size:16 final size:16
Alignment explanation
Indices: 29696672--29696706 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
29696662 CTTTCAAAAG
29696672 AAATTAAAA-AAAATTA
1 AAATTAAAATAAAA-TA
29696688 AAATTAAAATAAAATA
1 AAATTAAAATAAAATA
29696704 AAA
1 AAA
29696707 AGATAAGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
AAATTAAAATAAAATA
Found at i:29698449 original size:40 final size:40
Alignment explanation
Indices: 29698403--29698627 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
29698393 CTTGCACAAG
* * *
29698403 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
29698443 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
29698483 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
29698523 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
29698563 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
29698604 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
29698628 CATTCGAATA
Statistics
Matches: 159, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.81
41 29 0.18
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:29698498 original size:80 final size:80
Alignment explanation
Indices: 29698367--29698627 Score: 312
Period size: 80 Copynumber: 3.3 Consensus size: 80
29698357 CTCAAGTAAT
* * * * * * *
29698367 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
29698430 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * *
29698445 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
29698509 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
29698525 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
29698590 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
29698606 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
29698628 CATTCGAATA
Statistics
Matches: 155, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
78 12 0.08
79 16 0.10
80 94 0.61
81 33 0.21
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:29706455 original size:40 final size:41
Alignment explanation
Indices: 29706391--29706506 Score: 146
Period size: 40 Copynumber: 2.9 Consensus size: 41
29706381 NNNNNNNTCG
*
29706391 CTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG-CAA
1 CTAGCACAAATGCCTTCGGATCTTAGCCCGGATATAGTCAA
* * * * *
29706431 CTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGTCAC
1 CTAGCACAAATGCCTTCGGATCTTAGCCCGGATATAGTCAA
*
29706472 CTAGCACAAAAGCCTTCGGGA-CTTAGCCCGGATAT
1 CTAGCACAAATGCCTTC-GGATCTTAGCCCGGATAT
29706507 CATTCGAATA
Statistics
Matches: 63, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
40 32 0.51
41 28 0.44
42 3 0.05
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
CTAGCACAAATGCCTTCGGATCTTAGCCCGGATATAGTCAA
Found at i:29706878 original size:38 final size:38
Alignment explanation
Indices: 29706836--29706960 Score: 250
Period size: 38 Copynumber: 3.3 Consensus size: 38
29706826 TGCTAGCTTA
29706836 TGGCCGAACATACACATCAACTTATGTACTCATTCATG
1 TGGCCGAACATACACATCAACTTATGTACTCATTCATG
29706874 TGGCCGAACATACACATCAACTTATGTACTCATTCATG
1 TGGCCGAACATACACATCAACTTATGTACTCATTCATG
29706912 TGGCCGAACATACACATCAACTTATGTACTCATTCATG
1 TGGCCGAACATACACATCAACTTATGTACTCATTCATG
29706950 TGGCCGAACAT
1 TGGCCGAACAT
29706961 GCATGTCTAT
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 87 1.00
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.28
Consensus pattern (38 bp):
TGGCCGAACATACACATCAACTTATGTACTCATTCATG
Found at i:29709685 original size:21 final size:21
Alignment explanation
Indices: 29709659--29709704 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
29709649 TCCCATACCT
29709659 GTGTGTGAGGGTACCACACCC
1 GTGTGTGAGGGTACCACACCC
*
29709680 GTGTGTGAGGGTACCACACTC
1 GTGTGTGAGGGTACCACACCC
29709701 GTGT
1 GTGT
29709705 ATTGTTGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.17, C:0.24, G:0.35, T:0.24
Consensus pattern (21 bp):
GTGTGTGAGGGTACCACACCC
Found at i:29712309 original size:27 final size:26
Alignment explanation
Indices: 29712271--29712328 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
29712261 ACATATATAC
*
29712271 ATCTGTTCTAGTGGCCTAGCCACAAT
1 ATCTGTTCTAGTGACCTAGCCACAAT
* * *
29712297 ATCTGTATCTAGTGACTTCGTCACAAT
1 ATCTGT-TCTAGTGACCTAGCCACAAT
29712324 ATCTG
1 ATCTG
29712329 GCAGCCTCGC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.34
Consensus pattern (26 bp):
ATCTGTTCTAGTGACCTAGCCACAAT
Found at i:29720490 original size:46 final size:46
Alignment explanation
Indices: 29720435--29720649 Score: 412
Period size: 46 Copynumber: 4.7 Consensus size: 46
29720425 GGTTGAGCAT
* *
29720435 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGC
29720481 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGC
29720527 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGC
29720573 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGC
29720619 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
29720650 TAGGGGCGGT
Statistics
Matches: 167, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
46 167 1.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (46 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGC
Found at i:29737559 original size:30 final size:29
Alignment explanation
Indices: 29737510--29737570 Score: 95
Period size: 30 Copynumber: 2.1 Consensus size: 29
29737500 CAAGTAGCCG
29737510 AAGCTAGCTAAATCACACACTTAGTGCCA
1 AAGCTAGCTAAATCACACACTTAGTGCCA
* *
29737539 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAG-CTAAATCACACACTTAGTGCCA
29737569 AA
1 AA
29737571 ACTTTTGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 7 0.24
30 22 0.76
ACGTcount: A:0.38, C:0.25, G:0.15, T:0.23
Consensus pattern (29 bp):
AAGCTAGCTAAATCACACACTTAGTGCCA
Found at i:29743250 original size:48 final size:48
Alignment explanation
Indices: 29743179--29743321 Score: 214
Period size: 48 Copynumber: 3.0 Consensus size: 48
29743169 CATTGGGGAA
* **
29743179 TACATTGATTTGGCTTCGGGCCATGATATTGGTACTTCGGGTGTGAGT
1 TACATTGATTTGGCTTCGGGCCATGATATCGGTACTTCGGGTGCAAGT
* *
29743227 TACATTAATTTGGCTTTGGGCCATGATATCGGTACTTCGGGTGCAAGT
1 TACATTGATTTGGCTTCGGGCCATGATATCGGTACTTCGGGTGCAAGT
* * *
29743275 TACATTGATTTGGCTTCGAGCCATGATATCGGCACTACGGGTGCAAG
1 TACATTGATTTGGCTTCGGGCCATGATATCGGTACTTCGGGTGCAAG
29743322 ACACCAAAAT
Statistics
Matches: 85, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 85 1.00
ACGTcount: A:0.20, C:0.17, G:0.29, T:0.34
Consensus pattern (48 bp):
TACATTGATTTGGCTTCGGGCCATGATATCGGTACTTCGGGTGCAAGT
Found at i:29760052 original size:21 final size:20
Alignment explanation
Indices: 29760026--29760064 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
29760016 ATGTTTTTTG
29760026 ATGTTTGATGATAGATTATGA
1 ATGTTTGATGATAG-TTATGA
29760047 ATGTTTGATGATAGTTAT
1 ATGTTTGATGATAGTTAT
29760065 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (20 bp):
ATGTTTGATGATAGTTATGA
Found at i:29760074 original size:21 final size:21
Alignment explanation
Indices: 29760026--29760072 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
29760016 ATGTTTTTTG
*
29760026 ATGTTTGATGATAGATTATGA
1 ATGTTTGATGATAGATTATCA
29760047 ATGTTTGATGATAG-TTATACA
1 ATGTTTGATGATAGATTAT-CA
29760068 A-GTTT
1 ATGTTT
29760073 TGTTAAGTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.45
Consensus pattern (21 bp):
ATGTTTGATGATAGATTATCA
Found at i:29762120 original size:20 final size:20
Alignment explanation
Indices: 29762091--29762129 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
29762081 TGATTAGTTG
* *
29762091 TGATTGAATTGTATTTGAAT
1 TGATTAAATTGTATGTGAAT
29762111 TGATTAAATTGTATGTGAA
1 TGATTAAATTGTATGTGAA
29762130 ATGTATGCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (20 bp):
TGATTAAATTGTATGTGAAT
Found at i:29762304 original size:10 final size:10
Alignment explanation
Indices: 29762289--29762316 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
29762279 TCATTGCGAC
29762289 TATATGTGAT
1 TATATGTGAT
29762299 TATATGTGAT
1 TATATGTGAT
29762309 TATATGTG
1 TATATGTG
29762317 GTTAATGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (10 bp):
TATATGTGAT
Found at i:29764651 original size:2 final size:2
Alignment explanation
Indices: 29764646--29764677 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
29764636 CATAATAAGA
*
29764646 AT AT AT AT AT AT AT AA AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
29764678 CTAAACTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:29766105 original size:18 final size:18
Alignment explanation
Indices: 29766068--29766117 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
29766058 AAAAAAATGA
*
29766068 AAAAATTAAGAAATTATT
1 AAAAATTAAAAAATTATT
29766086 AAAAATTAAAAAATCT-TT
1 AAAAATTAAAAAAT-TATT
**
29766104 AAATTTTAAAAAAT
1 AAAAATTAAAAAAT
29766118 AAAAATGATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 27 0.96
19 1 0.04
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (18 bp):
AAAAATTAAAAAATTATT
Found at i:29766154 original size:20 final size:21
Alignment explanation
Indices: 29766104--29766155 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 21
29766094 AAAAATCTTT
* *
29766104 AAATTTTAAAAAATAAAAATG
1 AAATTTCAAAATATAAAAATG
* *
29766125 -ATTTTGAAAATATAAAAA-G
1 AAATTTCAAAATATAAAAATG
29766144 AAATTTCAAAAT
1 AAATTTCAAAAT
29766156 TCAATGTTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 1 0.04
20 24 0.96
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.31
Consensus pattern (21 bp):
AAATTTCAAAATATAAAAATG
Found at i:29766684 original size:32 final size:32
Alignment explanation
Indices: 29766611--29766696 Score: 86
Period size: 32 Copynumber: 2.6 Consensus size: 32
29766601 ATATATATAT
* *
29766611 ATTTTTTAAAATGAAAAAGTAAAAAAATAGAA
1 ATTTTTTAAAATTAAAAAATAAAAAAATAGAA
* *
29766643 ACTTATTAAAATTAAAAAATAAAAATAA-A-AA
1 ATTTTTTAAAATTAAAAAATAAAAA-AATAGAA
29766674 GATTTTTTAAAAATATAAAAAAT
1 -ATTTTTT-AAAAT-TAAAAAAT
29766697 TCAAAAATTC
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
31 2 0.05
32 27 0.61
33 7 0.16
34 8 0.18
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (32 bp):
ATTTTTTAAAATTAAAAAATAAAAAAATAGAA
Found at i:29772431 original size:13 final size:13
Alignment explanation
Indices: 29772413--29772440 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
29772403 AATATAGGGG
29772413 AAAATGTACCATT
1 AAAATGTACCATT
29772426 AAAATGTACCATT
1 AAAATGTACCATT
29772439 AA
1 AA
29772441 CGAATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (13 bp):
AAAATGTACCATT
Found at i:29773270 original size:258 final size:258
Alignment explanation
Indices: 29772813--29773290 Score: 938
Period size: 258 Copynumber: 1.9 Consensus size: 258
29772803 TGCAATAAAT
*
29772813 TCATAAAAATGATTTTTATCAATATAGTTTTTTTCTTGGTATCTTTGATTAATTTGGTGTTTATT
1 TCATAAAAATAATTTTTATCAATATAGTTTTTTTCTTGGTATCTTTGATTAATTTGGTGTTTATT
29772878 TTTATGAACCAACAAAATACTTATAGTTTGATATAGAATAAATTGTCCATCATTTTTTACCGACA
66 TTTATGAACCAACAAAATACTTATAGTTTGATATAGAATAAATTGTCCATCATTTTTTACCGACA
*
29772943 GACGAACTGGATCGATAATCAATATTCTTTTTTTCATTAATTCTCTAAGAGTTAAATCCTTCTGA
131 GACGAACTGGATCGATAATCAATATTCCTTTTTTCATTAATTCTCTAAGAGTTAAATCCTTCTGA
29773008 ATCATCAAAATATCCAGATTCATCTGGTGGTTGGGGTATAAAATATTTTCAGGACCAAACAAA
196 ATCATCAAAATATCCAGATTCATCTGGTGGTTGGGGTATAAAATATTTTCAGGACCAAACAAA
29773071 TCATAAAAATAATTTTTATCAATATAGTTTTTTTCTTGGTATCTTTGATTAATTTGGTGTTTATT
1 TCATAAAAATAATTTTTATCAATATAGTTTTTTTCTTGGTATCTTTGATTAATTTGGTGTTTATT
29773136 TTTATGAACCAACAAAATACTTATAGTTTGATATAGAATAAATTGTCCATCATTTTTTACCGACA
66 TTTATGAACCAACAAAATACTTATAGTTTGATATAGAATAAATTGTCCATCATTTTTTACCGACA
29773201 GACGAACTGGATCGATAATCAATATTCCTTTTTTCATTAATTCTCTAAGAGTTAAATCCTTCTGA
131 GACGAACTGGATCGATAATCAATATTCCTTTTTTCATTAATTCTCTAAGAGTTAAATCCTTCTGA
29773266 ATCATCAAAATATCCAGATTCATCT
196 ATCATCAAAATATCCAGATTCATCT
29773291 CTCCCCGTTG
Statistics
Matches: 218, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
258 218 1.00
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.41
Consensus pattern (258 bp):
TCATAAAAATAATTTTTATCAATATAGTTTTTTTCTTGGTATCTTTGATTAATTTGGTGTTTATT
TTTATGAACCAACAAAATACTTATAGTTTGATATAGAATAAATTGTCCATCATTTTTTACCGACA
GACGAACTGGATCGATAATCAATATTCCTTTTTTCATTAATTCTCTAAGAGTTAAATCCTTCTGA
ATCATCAAAATATCCAGATTCATCTGGTGGTTGGGGTATAAAATATTTTCAGGACCAAACAAA
Found at i:29774118 original size:39 final size:39
Alignment explanation
Indices: 29774075--29774150 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
29774065 TTTCTGTGCG
29774075 AAAAATTCCCCATAGCATCTAGGATATCGCCTTCTCCCA
1 AAAAATTCCCCATAGCATCTAGGATATCGCCTTCTCCCA
*
29774114 AAAAATTCCCCATAGCATCTCGGATATCGCCTTCTCC
1 AAAAATTCCCCATAGCATCTAGGATATCGCCTTCTCC
29774151 TAGATAATTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.29, C:0.34, G:0.11, T:0.26
Consensus pattern (39 bp):
AAAAATTCCCCATAGCATCTAGGATATCGCCTTCTCCCA
Found at i:29776427 original size:261 final size:261
Alignment explanation
Indices: 29775958--29776479 Score: 965
Period size: 261 Copynumber: 2.0 Consensus size: 261
29775948 TAATATAATA
*
29775958 TATTTTCTAAGAATTGATTGGGTTATTAACACGGAGCCCTTTATTACTTAAGCAAGTAAAAGACT
1 TATTTTCTAAGAATTGATTGGGTTATTAACACGGAGCCCCTTATTACTTAAGCAAGTAAAAGACT
*
29776023 ATCCCAAGCTTCTGCTATTTCTATCATCATTTTCTCTTCTCTTTTGTATTTTTCTCTTTTGGGCT
66 ATCCCAAGCTTCTGCTATTTCTATCATCATTTTCTCTTCTCTTTTGTATTTTTCTCTTTTGGCCT
*
29776088 AGTCTTTTTTCTCTATCTTTTTTTCTGTATAATCAGAAATTTTTGATTCTTTGTTTTTACATATC
131 AGTCTTTTTTCTCGATCTTTTTTTCTGTATAATCAGAAATTTTTGATTCTTTGTTTTTACATATC
*
29776153 CAATTTTGAGATATTCGTTTCAGCGGT-CCAGAAATATCAAAAGAAAAAAAGAGTGGTTTGTCTA
196 CAATTTCGAGATATTCGTTTCAGCGGTCCCAGAAATATCAAAA-AAAAAAAGAGTGGTTTGTCTA
29776217 CT
260 CT
*
29776219 TATTTTCTAAGAATTGATTGGGTTATTAACACGGAGCCCCTTATTACTTGAGCAAGTAAAAGACT
1 TATTTTCTAAGAATTGATTGGGTTATTAACACGGAGCCCCTTATTACTTAAGCAAGTAAAAGACT
*
29776284 ATCCCAAGCTTCTGCTATTTCTATCCTCATTTTCTCTTCTCTTTTGTATTTTTCTCTTTTGGCCT
66 ATCCCAAGCTTCTGCTATTTCTATCATCATTTTCTCTTCTCTTTTGTATTTTTCTCTTTTGGCCT
*
29776349 CGTCTTTTTTCTCGATCTTTTTTTCTGTATAATCAGAAATTTTTGATTCTTTGTTTTTACATATC
131 AGTCTTTTTTCTCGATCTTTTTTTCTGTATAATCAGAAATTTTTGATTCTTTGTTTTTACATATC
29776414 CAATTTCGAGATATTCGTTTCAGCGGTCCCAGAAATATCAAAAAAAAAAAGAGTGGTTTGTCTAC
196 CAATTTCGAGATATTCGTTTCAGCGGTCCCAGAAATATCAAAAAAAAAAAGAGTGGTTTGTCTAC
29776479 T
261 T
29776480 CTGTCCAAAA
Statistics
Matches: 253, Mismatches: 7, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
261 238 0.94
262 15 0.06
ACGTcount: A:0.25, C:0.18, G:0.13, T:0.44
Consensus pattern (261 bp):
TATTTTCTAAGAATTGATTGGGTTATTAACACGGAGCCCCTTATTACTTAAGCAAGTAAAAGACT
ATCCCAAGCTTCTGCTATTTCTATCATCATTTTCTCTTCTCTTTTGTATTTTTCTCTTTTGGCCT
AGTCTTTTTTCTCGATCTTTTTTTCTGTATAATCAGAAATTTTTGATTCTTTGTTTTTACATATC
CAATTTCGAGATATTCGTTTCAGCGGTCCCAGAAATATCAAAAAAAAAAAGAGTGGTTTGTCTAC
T
Found at i:29781353 original size:38 final size:38
Alignment explanation
Indices: 29781268--29781353 Score: 102
Period size: 38 Copynumber: 2.3 Consensus size: 38
29781258 AGCACATTAT
* *
29781268 TGGCACACAAAGTGCATCTTGACACACGAGGTGCATCG
1 TGGCACACAAAGTGCATCTCGACACACGAGGTGCATCC
** * *
29781306 TGGTGCACAAAGTGCATACTCG-CATACGATGTGCATCC
1 TGGCACACAAAGTGCAT-CTCGACACACGAGGTGCATCC
29781344 TGGCACACAA
1 TGGCACACAA
29781354 TCTGCATCCT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
38 36 0.92
39 3 0.08
ACGTcount: A:0.29, C:0.27, G:0.24, T:0.20
Consensus pattern (38 bp):
TGGCACACAAAGTGCATCTCGACACACGAGGTGCATCC
Found at i:29784048 original size:50 final size:50
Alignment explanation
Indices: 29783965--29784301 Score: 320
Period size: 50 Copynumber: 6.7 Consensus size: 50
29783955 TAAGATGGTT
* * *
29783965 TTAGGCCACGTGTGTAGTACTAATTGCAGGCTACTACGTGTACCAGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAG
* * * * * * *
29784015 TTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCTGACAAC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGA-TAG
* * * * *
29784066 TTCA-ATCACGTGTGTAGTACTAAATGCATGCTACTACGTGTATCAGATGG
1 TT-AGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAG
* * * * * *
29784116 TTAGGTCATGTGTGTAGTACTAAGTGCAAGCTACTATGCGTACCTGACAAC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGA-TAG
* * * * *
29784167 TTCA-ATCACGTGTGTAGTACTAAATGCATGCTACTACGTGTATCAGATGG
1 TT-AGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAG
* * *
29784217 TTAGGTCATGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAG
* * * *
29784267 TT-GGTCGCATGTGTAGTACTAAGTTCAGGCTACTA
1 TTAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTA
29784302 TGCATACCAA
Statistics
Matches: 225, Mismatches: 56, Indels: 13
0.77 0.19 0.04
Matches are distributed among these distances:
49 30 0.13
50 119 0.53
51 74 0.33
52 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAG
Found at i:29784087 original size:51 final size:51
Alignment explanation
Indices: 29784025--29784202 Score: 216
Period size: 51 Copynumber: 3.5 Consensus size: 51
29784015 TTAGGTCGCA
*
29784025 TGTGTAGTACTAAGTGCAAGCTACTATGCGTACCTGACAACTTCAATCACG
1 TGTGTAGTACTAAATGCAAGCTACTATGCGTACCTGACAACTTCAATCACG
* * * * * *** * *
29784076 TGTGTAGTACTAAATGCATGCTACTACGTGTATCAGA-TGGTT-AGGTCATG
1 TGTGTAGTACTAAATGCAAGCTACTATGCGTACCTGACAACTTCA-ATCACG
*
29784126 TGTGTAGTACTAAGTGCAAGCTACTATGCGTACCTGACAACTTCAATCACG
1 TGTGTAGTACTAAATGCAAGCTACTATGCGTACCTGACAACTTCAATCACG
*
29784177 TGTGTAGTACTAAATGCATGCTACTA
1 TGTGTAGTACTAAATGCAAGCTACTA
29784203 CGTGTATCAG
Statistics
Matches: 100, Mismatches: 24, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
49 1 0.01
50 37 0.37
51 61 0.61
52 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (51 bp):
TGTGTAGTACTAAATGCAAGCTACTATGCGTACCTGACAACTTCAATCACG
Found at i:29784260 original size:101 final size:101
Alignment explanation
Indices: 29783971--29784252 Score: 501
Period size: 101 Copynumber: 2.8 Consensus size: 101
29783961 GGTTTTAGGC
* * * * ***
29783971 CACGTGTGTAGTACTAATTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAATGCATGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGTACT
29784036 AAGTGCAAGCTACTATGCGTACCTGACAACTTCAAT
66 AAGTGCAAGCTACTATGCGTACCTGACAACTTCAAT
29784072 CACGTGTGTAGTACTAAATGCATGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGTACT
1 CACGTGTGTAGTACTAAATGCATGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGTACT
29784137 AAGTGCAAGCTACTATGCGTACCTGACAACTTCAAT
66 AAGTGCAAGCTACTATGCGTACCTGACAACTTCAAT
29784173 CACGTGTGTAGTACTAAATGCATGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGTACT
1 CACGTGTGTAGTACTAAATGCATGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGTACT
29784238 AAGTGCAAGCTACTA
66 AAGTGCAAGCTACTA
29784253 CGTGTACCGG
Statistics
Matches: 174, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
101 174 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (101 bp):
CACGTGTGTAGTACTAAATGCATGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGTACT
AAGTGCAAGCTACTATGCGTACCTGACAACTTCAAT
Found at i:29784534 original size:16 final size:15
Alignment explanation
Indices: 29784513--29784542 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
29784503 GAATGGAGTA
29784513 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
29784529 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
29784543 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:29786294 original size:40 final size:40
Alignment explanation
Indices: 29786235--29786442 Score: 265
Period size: 40 Copynumber: 5.2 Consensus size: 40
29786225 AGCATATATA
* * * *
29786235 TGCATTCAAAGGTATCGAAGTAGAAACAGTGGCACGTATG
1 TGCATTCAAGGGTACCGAAGTACAAACAGGGGCACGTATG
* *
29786275 TGCATTCAAGGGTACCGAAGTACTAACAAGGGCACGTATG
1 TGCATTCAAGGGTACCGAAGTACAAACAGGGGCACGTATG
* * * *
29786315 TGCTTTCACGGGTACCGAAGTACAAATAGGGGCACGTGTG
1 TGCATTCAAGGGTACCGAAGTACAAACAGGGGCACGTATG
* *
29786355 TACATTCAATGGTACCGAAGTACAAACAGGGGCACGTATG
1 TGCATTCAAGGGTACCGAAGTACAAACAGGGGCACGTATG
* * *
29786395 TTCATTCAAGGGTATCGAAGTACGAAA-AGGGGCACATATG
1 TGCATTCAAGGGTACCGAAGTAC-AAACAGGGGCACGTATG
29786435 TGCATTCA
1 TGCATTCA
29786443 GGCAATAATT
Statistics
Matches: 144, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
40 141 0.98
41 3 0.02
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.22
Consensus pattern (40 bp):
TGCATTCAAGGGTACCGAAGTACAAACAGGGGCACGTATG
Found at i:29793653 original size:24 final size:24
Alignment explanation
Indices: 29793626--29793673 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
29793616 CATTCTTCCG
*
29793626 TCCATTCAAATTTAACATCCTTTC
1 TCCACTCAAATTTAACATCCTTTC
29793650 TCCACTCAAATTTAACATCCTTTC
1 TCCACTCAAATTTAACATCCTTTC
29793674 GGAGTAGTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.31, G:0.00, T:0.40
Consensus pattern (24 bp):
TCCACTCAAATTTAACATCCTTTC
Found at i:29800092 original size:43 final size:42
Alignment explanation
Indices: 29800036--29800143 Score: 128
Period size: 42 Copynumber: 2.5 Consensus size: 42
29800026 ATGCCAACGT
29800036 CCCAGACATGGTCTTACATATAATCAAATATCGATGCC-ACTG
1 CCCAGACATGGTCTTACATATAATCAAATA-CGATGCCGACTG
* * * * * * *
29800078 CCTCAGACAGGGTCTTACAAAAAATTATATACGATGCCGATTT
1 CC-CAGACATGGTCTTACATATAATCAAATACGATGCCGACTG
29800121 CCCAGACATGGTCTTACATATAA
1 CCCAGACATGGTCTTACATATAA
29800144 ATCTCAAGTC
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
42 27 0.50
43 27 0.50
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (42 bp):
CCCAGACATGGTCTTACATATAATCAAATACGATGCCGACTG
Found at i:29800127 original size:42 final size:42
Alignment explanation
Indices: 29800026--29800138 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 42
29800016 AGCTCGTACA
* * *
29800026 ATGCCAACGTCCCAGACATGGTCTTACATATAATCAAATATCG
1 ATGCC-ACTTCCCAGACATGGTCTTACAAAAAATCAAATATCG
* * * *
29800069 ATGCCACTGCCTCAGACAGGGTCTTACAAAAAATTATATA-CG
1 ATGCCACTTCC-CAGACATGGTCTTACAAAAAATCAAATATCG
*
29800111 ATGCCGATTTCCCAGACATGGTCTTACA
1 ATGCC-ACTTCCCAGACATGGTCTTACA
29800139 TATAAATCTC
Statistics
Matches: 58, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
42 26 0.45
43 32 0.55
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.26
Consensus pattern (42 bp):
ATGCCACTTCCCAGACATGGTCTTACAAAAAATCAAATATCG
Found at i:29803820 original size:43 final size:43
Alignment explanation
Indices: 29803719--29803841 Score: 149
Period size: 43 Copynumber: 2.9 Consensus size: 43
29803709 ATCGAGATGT
* * *
29803719 GATTATGTGTAAGACCATGTCTGGGACATTGGCATTGTATTGA
1 GATTATGTGTAAGACCATGTTTGGGACATTGGCATCGTAATGA
* * *
29803762 GATTACGTGTTAGACCATGTTTGGGACATTGGCATCGTTAAT-C
1 GATTATGTGTAAGACCATGTTTGGGACATTGGCATCG-TAATGA
* * *
29803805 GATTTTGTGTAAGACCCTGTTTGGGACAGTGGCATCG
1 GATTATGTGTAAGACCATGTTTGGGACATTGGCATCG
29803842 ATATATGATA
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
43 65 0.96
44 3 0.04
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.34
Consensus pattern (43 bp):
GATTATGTGTAAGACCATGTTTGGGACATTGGCATCGTAATGA
Found at i:29803873 original size:86 final size:84
Alignment explanation
Indices: 29803719--29803881 Score: 184
Period size: 86 Copynumber: 1.9 Consensus size: 84
29803709 ATCGAGATGT
* * * * * * *
29803719 GATTATGTGTAAGACCATGTCTGGGACATTGGCATTGTATTGAGATTACGTGTTAGACCATGTTT
1 GATTATGTGTAAGACCATGTCTGGGACAGTGGCATCGTATT-AGATAACATGTAAGACCATATCT
29803784 GGGACATTGGCATCGTTAATC
65 GGGACA-TGGCATCGTTAATC
* * *
29803805 GATTTTGTGTAAGACCCTGTTTGGGACAGTGGCATCG-ATATATGATAACATGTAAGACCATATC
1 GATTATGTGTAAGACCATGTCTGGGACAGTGGCATCGTAT-TA-GATAACATGTAAGACCATATC
*
29803869 TGGGATATGGCAT
64 TGGGACATGGCAT
29803882 TGTAGGAGTT
Statistics
Matches: 64, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
85 9 0.14
86 55 0.86
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.33
Consensus pattern (84 bp):
GATTATGTGTAAGACCATGTCTGGGACAGTGGCATCGTATTAGATAACATGTAAGACCATATCTG
GGACATGGCATCGTTAATC
Found at i:29804289 original size:27 final size:27
Alignment explanation
Indices: 29804259--29804436 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
29804249 ATATTGAGTC
* * * *
29804259 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
29804286 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
29804313 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
29804341 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
29804368 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
29804395 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
29804422 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
29804437 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:29804398 original size:82 final size:81
Alignment explanation
Indices: 29804280--29804435 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
29804270 TGCTATATAA
* *
29804280 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
29804345 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
29804362 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
29804426 CACTTAGTGC
65 CACTTAGTGC
29804436 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:29816049 original size:40 final size:39
Alignment explanation
Indices: 29816012--29816103 Score: 132
Period size: 39 Copynumber: 2.3 Consensus size: 39
29816002 GCTACTCGTT
*
29816012 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CATAGCCCGGAAT-TAGTAACTCGCA
* *
29816052 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
29816091 CAAATGCCTTCGG
1 CAAATGCCTTCGG
29816104 ATCTTAGTCT
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
39 33 0.69
40 15 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
Found at i:29816083 original size:39 final size:40
Alignment explanation
Indices: 29815993--29816156 Score: 167
Period size: 40 Copynumber: 4.1 Consensus size: 40
29815983 CGGAATTTAA
** *
29815993 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
29816033 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
29816072 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * * *
29816112 CTGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
29816152 CCGGA
1 CCGGA
29816157 CATCATTCGA
Statistics
Matches: 103, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
38 3 0.03
39 32 0.31
40 56 0.54
41 12 0.12
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:29817390 original size:56 final size:56
Alignment explanation
Indices: 29817323--29817498 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
29817313 TATTAGTTTA
*
29817323 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTGATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTGATGACATGTT
29817379 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTGATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTGATGACATGTT
*
29817435 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTGATGACATGTT
29817491 TTGCCCAT
1 TTGCCCAT
29817499 CATCCCTTGT
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 118 1.00
ACGTcount: A:0.23, C:0.22, G:0.10, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTGATGACATGTT
Found at i:29824987 original size:40 final size:40
Alignment explanation
Indices: 29824893--29825037 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
29824883 TACTCGAATG
*
29824893 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
29824934 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
29824974 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
29825014 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
29825038 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:29828067 original size:46 final size:46
Alignment explanation
Indices: 29828003--29828220 Score: 366
Period size: 46 Copynumber: 4.7 Consensus size: 46
29827993 AACCCGCCCC
* * *
29828003 TAAGTGAACTCGGACTCAACTCAACGAGCTTAGG-CGTTCGCATCCC
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCA
* * *
29828049 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
29828095 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
29828141 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
29828187 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
29828221 TGCTCAACCA
Statistics
Matches: 165, Mismatches: 6, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
45 3 0.02
46 162 0.98
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:29830413 original size:26 final size:29
Alignment explanation
Indices: 29830364--29830422 Score: 79
Period size: 26 Copynumber: 2.1 Consensus size: 29
29830354 AGATATAGGG
29830364 GACACACGGCCAAAACACATGCCC-TG-A
1 GACACACGGCCAAAACACATGCCCGTGTA
* *
29830391 GACACACGG-CTAGACACATGCCCGTGTA
1 GACACACGGCCAAAACACATGCCCGTGTA
29830419 GACA
1 GACA
29830423 AAATAAAGGC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 12 0.43
27 11 0.39
28 5 0.18
ACGTcount: A:0.34, C:0.34, G:0.22, T:0.10
Consensus pattern (29 bp):
GACACACGGCCAAAACACATGCCCGTGTA
Found at i:29831796 original size:11 final size:11
Alignment explanation
Indices: 29831780--29831826 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
29831770 TACGAACTTG
*
29831780 TTCGACCATGA
1 TTCGACAATGA
29831791 TTCGACAATGA
1 TTCGACAATGA
* *
29831802 TTCGACAGTAA
1 TTCGACAATGA
*
29831813 TTC-AAAATGA
1 TTCGACAATGA
29831823 TTCG
1 TTCG
29831827 CTATGATTTG
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
10 7 0.24
11 22 0.76
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (11 bp):
TTCGACAATGA
Found at i:29832015 original size:48 final size:48
Alignment explanation
Indices: 29831947--29832078 Score: 192
Period size: 48 Copynumber: 2.8 Consensus size: 48
29831937 GTGCTAGTTA
* * *
29831947 TGCCTTGATTTGGCTGCGGGCCATGTTATAGGCACTTCAAAGGTAAAT
1 TGCCTTGAGTTGGCTTCGGGCCATGGTATAGGCACTTCAAAGGTAAAT
* **
29831995 TGCCTTGAGTTGGCTTCGGGCTATGGTATAGGCACTTCGGAGGTAAAT
1 TGCCTTGAGTTGGCTTCGGGCCATGGTATAGGCACTTCAAAGGTAAAT
* *
29832043 TACCTTGAGTTGGCTTCGGGTCATGGTATAGGCACT
1 TGCCTTGAGTTGGCTTCGGGCCATGGTATAGGCACT
29832079 CTAGGGATAC
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 75 1.00
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.32
Consensus pattern (48 bp):
TGCCTTGAGTTGGCTTCGGGCCATGGTATAGGCACTTCAAAGGTAAAT
Found at i:29832094 original size:48 final size:48
Alignment explanation
Indices: 29831949--29832105 Score: 158
Period size: 48 Copynumber: 3.3 Consensus size: 48
29831939 GCTAGTTATG
* * * * * * *
29831949 CCTTGATTTGGCTGCGGGCCATGTTATAGGCACTTCA-AAGGTAAATTG
1 CCTTGAGTTGGCTTCGGGCTATGGTATAGGCACTT-AGGAGATAAATTA
* *
29831997 CCTTGAGTTGGCTTCGGGCTATGGTATAGGCACTTCGGAGGTAAATTA
1 CCTTGAGTTGGCTTCGGGCTATGGTATAGGCACTTAGGAGATAAATTA
**
29832045 CCTTGAGTTGGCTTCGGG-TCATGGTATAGGCACTCTAGG-GATACGTTA
1 CCTTGAGTTGGCTTCGGGCT-ATGGTATAGGCACT-TAGGAGATAAATTA
*
29832093 CCTTGATTTGGCT
1 CCTTGAGTTGGCT
29832106 ACAGGCCATC
Statistics
Matches: 94, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
47 1 0.01
48 90 0.96
49 3 0.03
ACGTcount: A:0.20, C:0.18, G:0.29, T:0.32
Consensus pattern (48 bp):
CCTTGAGTTGGCTTCGGGCTATGGTATAGGCACTTAGGAGATAAATTA
Found at i:29832097 original size:96 final size:97
Alignment explanation
Indices: 29831904--29832127 Score: 222
Period size: 96 Copynumber: 2.3 Consensus size: 97
29831894 TGGAGTATTA
* * *
29831904 AGTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGCTAGTTATGCCTTGATTTGGCTGCGGGCC
1 AGTTGGCTTCGGGCCATGATATAGGCACTTCGGGTGCTAATTA-GCCTTGAGTTGGCTGCGGGCC
* *
29831969 ATGTTATAGGCACTTCAAAGGTAAATTGCCTTG
65 ATGGTATAGGCACTTCAAAGGTAAATTACCTTG
* * * *
29832002 AGTTGGCTTCGGGCTATGGTATAGGCACTTCGGAG-G-TAAATTA-CCTTGAGTTGGCTTCGGGT
1 AGTTGGCTTCGGGCCATGATATAGGCACTTCGG-GTGCT-AATTAGCCTTGAGTTGGCTGCGGGC
* * **
29832064 CATGGTATAGGCAC-TCTAGGGATACGTTACCTTG
64 CATGGTATAGGCACTTCAAAGG-TAAATTACCTTG
* * * * *
29832098 ATTTGGCTACAGGCCATCATATAGGTACTT
1 AGTTGGCTTCGGGCCATGATATAGGCACTT
29832128 ATCGATTAAG
Statistics
Matches: 103, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
95 5 0.05
96 61 0.59
97 1 0.01
98 35 0.34
99 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.32
Consensus pattern (97 bp):
AGTTGGCTTCGGGCCATGATATAGGCACTTCGGGTGCTAATTAGCCTTGAGTTGGCTGCGGGCCA
TGGTATAGGCACTTCAAAGGTAAATTACCTTG
Found at i:29840787 original size:17 final size:17
Alignment explanation
Indices: 29840762--29840797 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
29840752 GCTTGTACAT
29840762 AAATAAATAAATAAATA
1 AAATAAATAAATAAATA
* *
29840779 AAATGAATAAATAATTA
1 AAATAAATAAATAAATA
29840796 AA
1 AA
29840798 GGCTCAAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (17 bp):
AAATAAATAAATAAATA
Found at i:29842269 original size:24 final size:24
Alignment explanation
Indices: 29842205--29842269 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 24
29842195 ATGGGAGGTT
*** *
29842205 GGAGTGATTTATGGAGTGTATCAT
1 GGAGTGATTTATGGAGAAAATCAA
* *
29842229 GGAGAGATATTA-AGAGAAAATCAA
1 GGAGTGAT-TTATGGAGAAAATCAA
29842253 GGAGTGATTTATGGAGA
1 GGAGTGATTTATGGAGA
29842270 GATTTAATGA
Statistics
Matches: 31, Mismatches: 8, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
23 3 0.10
24 25 0.81
25 3 0.10
ACGTcount: A:0.37, C:0.03, G:0.32, T:0.28
Consensus pattern (24 bp):
GGAGTGATTTATGGAGAAAATCAA
Found at i:29843729 original size:53 final size:54
Alignment explanation
Indices: 29843600--29843795 Score: 166
Period size: 54 Copynumber: 3.6 Consensus size: 54
29843590 TTTAGACTAT
* * * * ** * *
29843600 CGAAATAACCCTAG-TTTGTAAAATTATCGAAATACCCCCAGTTTGTAAAATTAT
1 CGAAAT-ACCCTCGATTTTTAAAATTACCAAAATACTACCAATTTGTAAAATTAA
* * * * *
29843654 CGAAATGCCC-CCAGTTTATAAAATTACCAAAATA-TTCTAATTTGTAAAATTAA
1 CGAAATACCCTCGA-TTTTTAAAATTACCAAAATACTACCAATTTGTAAAATTAA
* *
29843707 CGAAATACCCTCGATTTTTAAAATTACCAAAATACTACCGATTTGTAGAATT-A
1 CGAAATACCCTCGATTTTTAAAATTACCAAAATACTACCAATTTGTAAAATTAA
* * * *
29843760 CTAAAACACCCTTGATTTTTAAAATTACCGAAATAC
1 C-GAAATACCCTCGATTTTTAAAATTACCAAAATAC
29843796 CCTTGTAGTG
Statistics
Matches: 115, Mismatches: 22, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
53 47 0.41
54 68 0.59
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.32
Consensus pattern (54 bp):
CGAAATACCCTCGATTTTTAAAATTACCAAAATACTACCAATTTGTAAAATTAA
Found at i:29843731 original size:27 final size:27
Alignment explanation
Indices: 29843600--29843824 Score: 138
Period size: 27 Copynumber: 8.4 Consensus size: 27
29843590 TTTAGACTAT
* *
29843600 CGAAATAACCCTAG-TTTGTAAAATTAT
1 CGAAAT-ACCCTCGATTTGTAAAATTAC
* *
29843627 CGAAATACCC-CCAGTTTGTAAAATTAT
1 CGAAATACCCTCGA-TTTGTAAAATTAC
* * *
29843654 CGAAATGCCC-CCAGTTTATAAAATTAC
1 CGAAATACCCTCGA-TTTGTAAAATTAC
* ** * *
29843681 CAAAATATTCT-AATTTGTAAAATTAA
1 CGAAATACCCTCGATTTGTAAAATTAC
*
29843707 CGAAATACCCTCGATTTTTAAAATTAC
1 CGAAATACCCTCGATTTGTAAAATTAC
* * *
29843734 CAAAATACTAC-CGATTTGTAGAATTAC
1 CGAAATAC-CCTCGATTTGTAAAATTAC
** * * *
29843761 TAAAACACCCTTGATTTTTAAAATTAC
1 CGAAATACCCTCGATTTGTAAAATTAC
* * *
29843788 CGAAATACCCTTG-TAGTGTAAAATTTC
1 CGAAATACCCTCGAT-TTGTAAAATTAC
*
29843815 CAAAATACCC
1 CGAAATACCC
29843825 CTATAGGGTA
Statistics
Matches: 156, Mismatches: 35, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
26 25 0.16
27 130 0.83
28 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
CGAAATACCCTCGATTTGTAAAATTAC
Found at i:29843759 original size:80 final size:82
Alignment explanation
Indices: 29843614--29843798 Score: 180
Period size: 80 Copynumber: 2.3 Consensus size: 82
29843604 ATAACCCTAG
* * * * *
29843614 TTTGTAAAATTATCGAAATACCC-CCAGTTTGTAAAATTATCGAAATGCCCCCAGTTTATAAAAT
1 TTTGTAAAATTAACGAAATACCCTCCAGTTTGTAAAATTACCAAAATACACCCAGTTTATAAAAT
* **
29843678 TACCAAAATATTC-TAA
66 TACCAAAACACCCTTAA
* * * * *
29843694 TTTGTAAAATTAACGAAATACCCTCGA-TTTTTAAAATTACCAAAATACTACCGA-TTTGTAGAA
1 TTTGTAAAATTAACGAAATACCCTCCAGTTTGTAAAATTACCAAAATAC-ACCCAGTTTATAAAA
* *
29843757 TTACTAAAACACCCTTGA
65 TTACCAAAACACCCTTAA
* *
29843775 TTTTTAAAATTACCGAAATACCCT
1 TTTGTAAAATTAACGAAATACCCT
29843799 TGTAGTGTAA
Statistics
Matches: 85, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
80 56 0.66
81 29 0.34
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (82 bp):
TTTGTAAAATTAACGAAATACCCTCCAGTTTGTAAAATTACCAAAATACACCCAGTTTATAAAAT
TACCAAAACACCCTTAA
Found at i:29843835 original size:27 final size:27
Alignment explanation
Indices: 29843779--29843838 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
29843769 CCTTGATTTT
* * * *
29843779 TAAAATTACCGAAATACCCTTGTAGTG
1 TAAAATTACCAAAATACCCCTATAGGG
*
29843806 TAAAATTTCCAAAATACCCCTATAGGG
1 TAAAATTACCAAAATACCCCTATAGGG
29843833 TAAAAT
1 TAAAAT
29843839 GATTGTTTTG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.42, C:0.18, G:0.12, T:0.28
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTATAGGG
Found at i:29845343 original size:40 final size:39
Alignment explanation
Indices: 29845245--29845507 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
29845235 TCCTCGTTCA
* * * *
29845245 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
29845284 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
29845323 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
29845363 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
29845403 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
29845443 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
29845484 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
29845508 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:29845467 original size:120 final size:119
Alignment explanation
Indices: 29845245--29845507 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
29845235 TCCTCGTTCA
* * *
29845245 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
29845310 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
29845363 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
29845428 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
29845484 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
29845508 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:29845516 original size:41 final size:41
Alignment explanation
Indices: 29845439--29845516 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
29845429 TTTGTATCTC
* * *
29845439 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
29845480 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
29845517 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:29853293 original size:40 final size:39
Alignment explanation
Indices: 29853195--29853457 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
29853185 TCCTCGTTCA
* * * *
29853195 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
29853234 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
29853273 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
29853313 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
29853353 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
29853393 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
29853434 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
29853458 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:29853417 original size:120 final size:119
Alignment explanation
Indices: 29853195--29853457 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
29853185 TCCTCGTTCA
* * *
29853195 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
29853260 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
29853313 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
29853378 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
29853434 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
29853458 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:29853466 original size:41 final size:41
Alignment explanation
Indices: 29853389--29853466 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
29853379 TTTGTATCTC
* * *
29853389 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
29853430 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
29853467 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:29855373 original size:27 final size:26
Alignment explanation
Indices: 29855343--29855427 Score: 71
Period size: 27 Copynumber: 3.2 Consensus size: 26
29855333 GTGCAAATAG
*
29855343 TATTTACCAATGGCAATGTGCCTATCA
1 TATTTACC-ATGGCAATGTGCCGATCA
* ** *
29855370 TATTTATCCATGACTCTGTGTCGATCA
1 TATTTA-CCATGGCAATGTGCCGATCA
** *
29855397 TATTTACCCATGGCTGTGTGCCGATTA
1 TATTTA-CCATGGCAATGTGCCGATCA
29855424 TATT
1 TATT
29855428 ACCGTCGCTG
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
27 45 0.96
28 2 0.04
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (26 bp):
TATTTACCATGGCAATGTGCCGATCA
Found at i:29855766 original size:27 final size:27
Alignment explanation
Indices: 29855707--29855766 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
29855697 AGATAGGCTA
* ** *
29855707 GGCCCAATTGATTCTGTTATGGGCTGT
1 GGCCCAAATGATAATGTAATGGGCTGT
* *
29855734 GACCCAAATGATAATGTAATGGGCTTT
1 GGCCCAAATGATAATGTAATGGGCTGT
29855761 GGCCCA
1 GGCCCA
29855767 CTTATGCTTT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (27 bp):
GGCCCAAATGATAATGTAATGGGCTGT
Found at i:29867067 original size:43 final size:42
Alignment explanation
Indices: 29866977--29867087 Score: 109
Period size: 43 Copynumber: 2.6 Consensus size: 42
29866967 GATTTACGTG
* ** * * * *
29866977 TAAGACCATTTCTGGGACATCGTCATCATATATGATTTCGTT
1 TAAGACCACTTCTGGGATGTTGGCATCATATATGATTACATT
*
29867019 TAAGACC-CTGTCTGGGACTG-TGGCATCGATATTTGATTACATT
1 TAAGACCACT-TCTGGGA-TGTTGGCATC-ATATATGATTACATT
29867062 TAAGACCACTTCTGGGATGTTGGCAT
1 TAAGACCACTTCTGGGATGTTGGCAT
29867088 TGTATGAGCT
Statistics
Matches: 56, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
41 1 0.02
42 21 0.38
43 32 0.57
44 2 0.04
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (42 bp):
TAAGACCACTTCTGGGATGTTGGCATCATATATGATTACATT
Done.