Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56482370
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1659275 characters in sequence are not A, C, G, or T
File 95 of 172
Found at i:31981369 original size:101 final size:101
Alignment explanation
Indices: 31981188--31981369 Score: 283
Period size: 101 Copynumber: 1.8 Consensus size: 101
31981178 GGGTTTTAGG
** * *
31981188 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTTAGGTCACATGTGTAGTAC
*
31981253 TAAGTACAAGCTACTATGCGTACCCGATAGCTTCGA
66 TAAGTACAAGATACTATGCGTACCCGATAGCTTCGA
* *
31981289 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTTAGGTCACATGTGTAGTAC
* *
31981354 TAAGTGCAGGATACTA
66 TAAGTACAAGATACTA
31981370 CGTGTACTAG
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 72 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTTAGGTCACATGTGTAGTAC
TAAGTACAAGATACTATGCGTACCCGATAGCTTCGA
Found at i:31996589 original size:43 final size:42
Alignment explanation
Indices: 31996505--31996645 Score: 124
Period size: 43 Copynumber: 3.3 Consensus size: 42
31996495 TCCCAGTTAT
* * **
31996505 GGTCTTACATGTTATCAT-ATATCGATGCCACTATCGTAGACAG
1 GGTCTTACATG-TATCATAATA-CGATGCCAATGTCCCAGACAG
* *
31996548 GGTCTTAGATGATATCATAATACGATGCCAATGTCCCAGACAT
1 GGTCTTACATG-TATCATAATACGATGCCAATGTCCCAGACAG
* * * * * *
31996591 TGTCTTACACGTAATCACAATACAATGCCAATGTCCCAAAC-T
1 GGTCTTACATGT-ATCATAATACGATGCCAATGTCCCAGACAG
31996633 GGTCTTACATGTA
1 GGTCTTACATGTA
31996646 ATCACATATC
Statistics
Matches: 81, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
41 1 0.01
42 12 0.15
43 65 0.80
44 3 0.04
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (42 bp):
GGTCTTACATGTATCATAATACGATGCCAATGTCCCAGACAG
Found at i:31996651 original size:42 final size:43
Alignment explanation
Indices: 31996548--31996651 Score: 131
Period size: 43 Copynumber: 2.4 Consensus size: 43
31996538 TCGTAGACAG
* * * *
31996548 GGTCTTAGATG-ATATCATAATACGATGCCAATGTCCCAGACAT
1 GGTCTTACATGTA-ATCACAATACAATGCCAATGTCCCAAACAT
* *
31996591 TGTCTTACACGTAATCACAATACAATGCCAATGTCCCAAAC-T
1 GGTCTTACATGTAATCACAATACAATGCCAATGTCCCAAACAT
31996633 GGTCTTACATGTAATCACA
1 GGTCTTACATGTAATCACA
31996652 TATCGATAAC
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
42 18 0.35
43 33 0.63
44 1 0.02
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (43 bp):
GGTCTTACATGTAATCACAATACAATGCCAATGTCCCAAACAT
Found at i:32002738 original size:27 final size:27
Alignment explanation
Indices: 32002707--32002884 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
32002697 TAAATTGTAC
32002707 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32002734 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32002760 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32002788 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
** *
32002816 AGCACTAAGTGTGCGATTTGGTTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32002843 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32002870 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32002885 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32002848 original size:82 final size:81
Alignment explanation
Indices: 32002708--32002863 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
32002698 AAATTGTACA
* *
32002708 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
32002773 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** **
32002789 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGGTTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
*
32002853 GTGCGAGTTGA
64 GTGCGAATTGA
32002864 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32002875 original size:82 final size:81
Alignment explanation
Indices: 32002704--32002884 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
32002694 GATTAAATTG
* *
32002704 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
32002769 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** **
32002785 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGGTTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
32002849 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32002867 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32002885 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32007615 original size:16 final size:16
Alignment explanation
Indices: 32007596--32007632 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
32007586 AAAAATCCCA
*
32007596 AAAAGTTGAAATGCCG
1 AAAAGTCGAAATGCCG
32007612 AAAAGTCGAAATGCCG
1 AAAAGTCGAAATGCCG
32007628 AAAAG
1 AAAAG
32007633 CCAAAAGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.49, C:0.14, G:0.24, T:0.14
Consensus pattern (16 bp):
AAAAGTCGAAATGCCG
Found at i:32007880 original size:28 final size:28
Alignment explanation
Indices: 32007848--32007959 Score: 120
Period size: 28 Copynumber: 4.0 Consensus size: 28
32007838 TATGAGCATG
32007848 AATATAAATGTGATTTGGGCCTAAT-GGC
1 AATATAAATGTGA-TTGGGCCTAATGGGC
* *
32007876 AATATGAATGTGGTTTGGGCCTAATGGGCC
1 AATATAAATGT-GATTGGGCCTAATGGG-C
*
32007906 AA-ATAAATGTGAATGGGCCTAATGGGC
1 AATATAAATGTGATTGGGCCTAATGGGC
* * * *
32007933 TATATAAAAGAGATTGGGCCTAGTGGG
1 AATATAAATGTGATTGGGCCTAATGGG
32007960 TCATATGCAT
Statistics
Matches: 70, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
27 2 0.03
28 55 0.79
29 10 0.14
30 3 0.04
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.28
Consensus pattern (28 bp):
AATATAAATGTGATTGGGCCTAATGGGC
Found at i:32010800 original size:37 final size:37
Alignment explanation
Indices: 32010726--32010800 Score: 107
Period size: 37 Copynumber: 2.0 Consensus size: 37
32010716 GTTCCAACTG
* * *
32010726 AAACACCAATCGCTTGTAAGAGCTAATCCATCTGATA
1 AAACACCAATCGCTTATAAGAGCTAATCCACCCGATA
32010763 AAACACCAGAT-GCTTATAAGAGCTAATCCACCCGATA
1 AAACACCA-ATCGCTTATAAGAGCTAATCCACCCGATA
32010800 A
1 A
32010801 CACGCCATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 32 0.94
38 2 0.06
ACGTcount: A:0.40, C:0.25, G:0.13, T:0.21
Consensus pattern (37 bp):
AAACACCAATCGCTTATAAGAGCTAATCCACCCGATA
Found at i:32012825 original size:15 final size:15
Alignment explanation
Indices: 32012805--32012836 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
32012795 TCAGAAAGGG
32012805 GAAGAGCAAGAAAGT
1 GAAGAGCAAGAAAGT
*
32012820 GAAGAGGAAGAAAGT
1 GAAGAGCAAGAAAGT
32012835 GA
1 GA
32012837 TGGAACAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.03, G:0.38, T:0.06
Consensus pattern (15 bp):
GAAGAGCAAGAAAGT
Found at i:32015697 original size:20 final size:21
Alignment explanation
Indices: 32015669--32015708 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
32015659 ATATTTGATT
32015669 ATTTGATTTCTCATTT-TTTTC
1 ATTTGATTTC-CATTTATTTTC
32015690 ATTT-ATTTCCATTTATTTT
1 ATTTGATTTCCATTTATTTT
32015709 TACTATAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.28
20 9 0.50
21 4 0.22
ACGTcount: A:0.17, C:0.12, G:0.03, T:0.68
Consensus pattern (21 bp):
ATTTGATTTCCATTTATTTTC
Found at i:32021434 original size:41 final size:42
Alignment explanation
Indices: 32021348--32021434 Score: 124
Period size: 41 Copynumber: 2.1 Consensus size: 42
32021338 TTTCAAAAAA
**
32021348 TTTTCAAAAATCCCAAAAATATTTTCTATTTTTATTTTTAAT
1 TTTTCAAAAATCCCAAAAATATTTTCTATCATTATTTTTAAT
*
32021390 TTTTTAAAAAT-CCAAAAATATTTTTCT-TCATTATTTTTAAT
1 TTTTCAAAAATCCCAAAAATA-TTTTCTATCATTATTTTTAAT
32021431 TTTT
1 TTTT
32021435 GTTATTGCAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
41 25 0.61
42 16 0.39
ACGTcount: A:0.34, C:0.10, G:0.00, T:0.55
Consensus pattern (42 bp):
TTTTCAAAAATCCCAAAAATATTTTCTATCATTATTTTTAAT
Found at i:32028718 original size:22 final size:22
Alignment explanation
Indices: 32028686--32028728 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
32028676 CTAAGTCAAC
*
32028686 AGGACGACTCAACGTCGTAGAT
1 AGGACGACTCAACGCCGTAGAT
* *
32028708 AGGACGGCTCAATGCCGTAGA
1 AGGACGACTCAACGCCGTAGA
32028729 CATTGCAGCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.30, C:0.23, G:0.30, T:0.16
Consensus pattern (22 bp):
AGGACGACTCAACGCCGTAGAT
Found at i:32034412 original size:42 final size:43
Alignment explanation
Indices: 32034299--32034414 Score: 135
Period size: 43 Copynumber: 2.7 Consensus size: 43
32034289 GGGATTTAGA
* *
32034299 AATCCGAGCTCGTTGAGCGGTCCGAGTTCGTGATATATATGAG
1 AATCCGAGCTCGTTGAGAGGTCCGAGTTCATGATATATATGAG
* * * * * *
32034342 AATCTGAACTTGTTGAGTGGTCCAAGTTCATGATATATGTG-G
1 AATCCGAGCTCGTTGAGAGGTCCGAGTTCATGATATATATGAG
* *
32034384 CATCCGAGCTCGTTGAGAGGTCTGAGTTCAT
1 AATCCGAGCTCGTTGAGAGGTCCGAGTTCAT
32034415 TATGGATGTA
Statistics
Matches: 59, Mismatches: 14, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
42 25 0.42
43 34 0.58
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.31
Consensus pattern (43 bp):
AATCCGAGCTCGTTGAGAGGTCCGAGTTCATGATATATATGAG
Found at i:32035320 original size:101 final size:100
Alignment explanation
Indices: 32035145--32035349 Score: 374
Period size: 101 Copynumber: 2.0 Consensus size: 100
32035135 TTTCATATAA
32035145 AATTTACGGATCTTAATTTAGAGTTTTGTAGCTCCAGATATAAATAATTTAGTAACTATGACTCA
1 AATTTACGGATCTTAATTTAGAGTTTTGTAGCTCCAGATATAAATAATTTAGTAACTATGACTCA
32035210 AGAAAATAGCATGACCAGAAAATAAGTAAAAGTGAT
66 AGAAAATAGCATGACCAGAAAATAAGTAAAAGTG-T
* **
32035246 AATTTACGGATCTTAATTTAGAGTTTTTTTTCTCCAGATATAAATAATTTAGTAACTATGACTCA
1 AATTTACGGATCTTAATTTAGAGTTTTGTAGCTCCAGATATAAATAATTTAGTAACTATGACTCA
32035311 AGAAAATAGCATGACCAGAAAATAAGTAAAAGTGT
66 AGAAAATAGCATGACCAGAAAATAAGTAAAAGTGT
32035346 AATT
1 AATT
32035350 ATGATTATAT
Statistics
Matches: 101, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
100 5 0.05
101 96 0.95
ACGTcount: A:0.42, C:0.11, G:0.15, T:0.33
Consensus pattern (100 bp):
AATTTACGGATCTTAATTTAGAGTTTTGTAGCTCCAGATATAAATAATTTAGTAACTATGACTCA
AGAAAATAGCATGACCAGAAAATAAGTAAAAGTGT
Found at i:32044327 original size:90 final size:89
Alignment explanation
Indices: 32044169--32044345 Score: 219
Period size: 90 Copynumber: 2.0 Consensus size: 89
32044159 TATACTCCTC
*** * * * **
32044169 ATTCCTGCTATGAATTTTATCAACATAAGGTTTAAGACTAGTATTATTTACCTTGAACGTGCTGA
1 ATTCCTGCTATGAATCCCATCAAAATAAGGTTTAAGACGAGTATTATTTACCTTAAACGTGCCAA
* *
32044234 ATTTGGGTTGATTTACCTCGACCG
66 ATTTGGGATGACTTACCTCGACCG
* * * *
32044258 NATTCCTGCTATGAATCCCATCAAAATAAGGTTTTAGGCGGGTATTATTTACCTTAAAGGTGCCA
1 -ATTCCTGCTATGAATCCCATCAAAATAAGGTTTAAGACGAGTATTATTTACCTTAAACGTGCCA
32044323 AATTTGGGATGACTTACCTCGAC
65 AATTTGGGATGACTTACCTCGAC
32044346 TGTACCGAAT
Statistics
Matches: 73, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
90 73 1.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (89 bp):
ATTCCTGCTATGAATCCCATCAAAATAAGGTTTAAGACGAGTATTATTTACCTTAAACGTGCCAA
ATTTGGGATGACTTACCTCGACCG
Found at i:32046469 original size:15 final size:15
Alignment explanation
Indices: 32046449--32046477 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
32046439 TATCACATAG
32046449 TTCTAAAAAGGTTAA
1 TTCTAAAAAGGTTAA
32046464 TTCTAAAAAGGTTA
1 TTCTAAAAAGGTTA
32046478 CTAAGTGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (15 bp):
TTCTAAAAAGGTTAA
Found at i:32048964 original size:40 final size:40
Alignment explanation
Indices: 32048870--32049014 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
32048860 TACTCGAATG
*
32048870 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
32048911 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
32048951 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
32048991 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
32049015 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:32068842 original size:31 final size:31
Alignment explanation
Indices: 32068801--32068873 Score: 96
Period size: 30 Copynumber: 2.4 Consensus size: 31
32068791 TAAAAAATAA
* *
32068801 AAATTCAATTTTTTTTAAAAAATTGA-TGATC
1 AAATTTAATTTTTTTTAAAAAATTAATTG-TC
*
32068832 ATATTTAA-TTTTTTTAAAAAATTAATTGTC
1 AAATTTAATTTTTTTTAAAAAATTAATTGTC
32068862 AAATTTAATTTT
1 AAATTTAATTTT
32068874 AAGAAAAATA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
30 25 0.69
31 11 0.31
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (31 bp):
AAATTTAATTTTTTTTAAAAAATTAATTGTC
Found at i:32070302 original size:34 final size:34
Alignment explanation
Indices: 32070259--32070324 Score: 132
Period size: 34 Copynumber: 1.9 Consensus size: 34
32070249 AATGCCAATC
32070259 AAGCTAAAACTCAATCAATATAGAATTTATCTTT
1 AAGCTAAAACTCAATCAATATAGAATTTATCTTT
32070293 AAGCTAAAACTCAATCAATATAGAATTTATCT
1 AAGCTAAAACTCAATCAATATAGAATTTATCT
32070325 GTTTATTGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.45, C:0.15, G:0.06, T:0.33
Consensus pattern (34 bp):
AAGCTAAAACTCAATCAATATAGAATTTATCTTT
Found at i:32070859 original size:16 final size:17
Alignment explanation
Indices: 32070838--32070874 Score: 67
Period size: 16 Copynumber: 2.2 Consensus size: 17
32070828 GGCATAATTT
32070838 AAAATGAAAATT-TAAA
1 AAAATGAAAATTATAAA
32070854 AAAATGAAAATTATAAA
1 AAAATGAAAATTATAAA
32070871 AAAA
1 AAAA
32070875 AGGAAGATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (17 bp):
AAAATGAAAATTATAAA
Found at i:32075908 original size:58 final size:58
Alignment explanation
Indices: 32075818--32075936 Score: 202
Period size: 58 Copynumber: 2.1 Consensus size: 58
32075808 TGTAAAAGCA
* * *
32075818 ATTTTGTTGTGATATAGGGGGCCATAAGGATTAGGGCTCATATTGATATTTGAAGGCC
1 ATTTTGTTGTGATATAGGGGGCAATAAGGATTAAGGCTCATATTGATATTCGAAGGCC
*
32075876 ATTTTGTTGTGATATAGGGGGCAATAAGGATTAAGGCTCATATTGATATTCGAAGTCC
1 ATTTTGTTGTGATATAGGGGGCAATAAGGATTAAGGCTCATATTGATATTCGAAGGCC
32075934 ATT
1 ATT
32075937 GAAGCTGAAG
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.28, C:0.10, G:0.27, T:0.35
Consensus pattern (58 bp):
ATTTTGTTGTGATATAGGGGGCAATAAGGATTAAGGCTCATATTGATATTCGAAGGCC
Found at i:32080620 original size:15 final size:15
Alignment explanation
Indices: 32080592--32080625 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
32080582 GTAATTGATG
*
32080592 TGTGGATGACTTGGT
1 TGTGGATGAATTGGT
*
32080607 TGTGGTTGAATTGGT
1 TGTGGATGAATTGGT
32080622 TGTG
1 TGTG
32080626 TGTATATGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.03, G:0.41, T:0.44
Consensus pattern (15 bp):
TGTGGATGAATTGGT
Found at i:32084349 original size:14 final size:14
Alignment explanation
Indices: 32084330--32084358 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
32084320 TGTGCCACAC
32084330 ACGACTAGTAGACA
1 ACGACTAGTAGACA
32084344 ACGACTAGTAGACA
1 ACGACTAGTAGACA
32084358 A
1 A
32084359 GCCCGTGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.21, G:0.21, T:0.14
Consensus pattern (14 bp):
ACGACTAGTAGACA
Found at i:32090135 original size:43 final size:42
Alignment explanation
Indices: 32090013--32090157 Score: 127
Period size: 43 Copynumber: 3.4 Consensus size: 42
32090003 TAAGACCACA
* * *
32090013 TCTGGGACATTGGCATCG-ACTTGAGATTTACATGTAAGACCATG
1 TCTGGGACAGTGGCATCGTA-TT-CGA-TTACATGTAAGACCCTG
* * ***
32090057 TCTGGGACA-TCGACATCGTATTTGATTTTGTGTAAGACCCTG
1 TCTGGGACAGT-GGCATCGTATTCGATTACATGTAAGACCCTG
32090099 TCTGGGACAGTGGCATCAGTATTCGATTACATGTAAGACCAC-G
1 TCTGGGACAGTGGCATC-GTATTCGATTACATGTAAGACC-CTG
32090142 TCTGGGA-AGTTGGCAT
1 TCTGGGACAG-TGGCAT
32090158 TGTACGAGCT
Statistics
Matches: 84, Mismatches: 11, Indels: 13
0.78 0.10 0.12
Matches are distributed among these distances:
42 29 0.35
43 36 0.43
44 18 0.21
45 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (42 bp):
TCTGGGACAGTGGCATCGTATTCGATTACATGTAAGACCCTG
Found at i:32096688 original size:21 final size:21
Alignment explanation
Indices: 32096662--32096708 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
32096652 AAGTGTACTG
*
32096662 TACTGGCAGCTCTGTTGCAAT
1 TACTGGCAGCTCTGCTGCAAT
* *
32096683 TACTGGCAGCTTTGCTGTAAT
1 TACTGGCAGCTCTGCTGCAAT
32096704 TACTG
1 TACTG
32096709 AATAGTGCTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.36
Consensus pattern (21 bp):
TACTGGCAGCTCTGCTGCAAT
Found at i:32103033 original size:42 final size:42
Alignment explanation
Indices: 32102970--32103123 Score: 164
Period size: 42 Copynumber: 3.6 Consensus size: 42
32102960 ACTAAGTCTA
*
32102970 CGTGTAAGACCATATTTGGGATATGGCATCGATATGAGATTT
1 CGTGTAAGACCATATTTGGGATATGGCATCAATATGAGATTT
* * * * ** *
32103012 TGTTTAAGACCACATTTGGGATGTGAAATTAATATGAGATTT
1 CGTGTAAGACCATATTTGGGATATGGCATCAATATGAGATTT
* * * * **
32103054 CGTGTAAGACCATAGTTGGGCTATTGGCATCTATACGAGATCC
1 CGTGTAAGACCATATTTGGGATA-TGGCATCAATATGAGATTT
*
32103097 CATGTAAGACCATATTTGGGATATGGC
1 CGTGTAAGACCATATTTGGGATATGGC
32103124 GTTGGTATGG
Statistics
Matches: 87, Mismatches: 24, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
42 55 0.63
43 32 0.37
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (42 bp):
CGTGTAAGACCATATTTGGGATATGGCATCAATATGAGATTT
Found at i:32104315 original size:20 final size:20
Alignment explanation
Indices: 32104286--32104339 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
32104276 CATGGCCTGC
*
32104286 CCACATGGGCGTGTCCCAAG
1 CCACACGGGCGTGTCCCAAG
*
32104306 CCACACGGGCATGTCCCAAG
1 CCACACGGGCGTGTCCCAAG
*
32104326 CCACACGGACGTGT
1 CCACACGGGCGTGT
32104340 GGCTCTTAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.22, C:0.37, G:0.28, T:0.13
Consensus pattern (20 bp):
CCACACGGGCGTGTCCCAAG
Found at i:32120356 original size:42 final size:42
Alignment explanation
Indices: 32120311--32120458 Score: 145
Period size: 42 Copynumber: 3.5 Consensus size: 42
32120301 TAAGGATACG
*
32120311 TGTAAGACCATATCTAGGATATGGCATCGATATGAGATTTCG
1 TGTAAGACCATATCTAGGATATGGCATCGATATGAGATTTCA
* * * * *
32120353 TGTAAGACCACATTTGGGATGTGGCATTGATATGAGATTTCA
1 TGTAAGACCATATCTAGGATATGGCATCGATATGAGATTTCA
* ** * * * *
32120395 TGTAACACCATGGCTGGGCTATTGGCATCGATACGAGA-TCCTA
1 TGTAAGACCATATCTAGGATA-TGGCATCGATATGAGATTTC-A
*
32120438 TGTAAGACTATATCTAGGATA
1 TGTAAGACCATATCTAGGATA
32120459 CGGCGTTGGT
Statistics
Matches: 82, Mismatches: 22, Indels: 3
0.77 0.21 0.03
Matches are distributed among these distances:
42 52 0.63
43 30 0.37
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATATCTAGGATATGGCATCGATATGAGATTTCA
Found at i:32127004 original size:39 final size:39
Alignment explanation
Indices: 32126947--32127079 Score: 205
Period size: 39 Copynumber: 3.4 Consensus size: 39
32126937 ATGCATGTTA
32126947 CTGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATG
1 CTGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATG
* *
32126986 CTGGAAATATATCTGGACTTGAAGTCCGCAGGCTTTATG
1 CTGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATG
* * *
32127025 CTGGAAACATATCCGGACTTAAAGTCCGCAGGC-TAAGTG
1 CTGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTA-TG
32127064 CTGGAAAAATATCCGG
1 CTGGAAAAATATCCGG
32127080 GCTAAGTCCC
Statistics
Matches: 86, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
38 2 0.02
39 84 0.98
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (39 bp):
CTGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATG
Found at i:32127105 original size:78 final size:78
Alignment explanation
Indices: 32126947--32127106 Score: 191
Period size: 78 Copynumber: 2.1 Consensus size: 78
32126937 ATGCATGTTA
* * * *
32126947 CTGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGCTGGAAATATATCTGGACTTGAAGTC
1 CTGGAAAAATATCCGGACTTAAAGTCCGCAGGCTTAATGCTGGAAAAATATCCGGACTTGAAGTC
* *
32127012 CGCAGGCTTTATG
66 CGAAGGCTTCATG
* *
32127025 CTGGAAACATATCCGGACTTAAAGTCCGCAGGC-TAAGTGCTGGAAAAATATCCGGGC-T-AAGT
1 CTGGAAAAATATCCGGACTTAAAGTCCGCAGGCTTAA-TGCTGGAAAAATATCCGGACTTGAAGT
*
32127087 CCCGAAGGCATTCGTG
65 -CCGAAGGC-TTCATG
32127103 CTGG
1 CTGG
32127107 TGTTATATCC
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
76 4 0.06
77 10 0.14
78 56 0.80
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (78 bp):
CTGGAAAAATATCCGGACTTAAAGTCCGCAGGCTTAATGCTGGAAAAATATCCGGACTTGAAGTC
CGAAGGCTTCATG
Found at i:32127137 original size:14 final size:14
Alignment explanation
Indices: 32127118--32127148 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
32127108 GTTATATCCG
32127118 GGCTAAGTCCTGAA
1 GGCTAAGTCCTGAA
32127132 GGCTAAGTCCTGAA
1 GGCTAAGTCCTGAA
32127146 GGC
1 GGC
32127149 ATTCGTGCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.26, C:0.23, G:0.32, T:0.19
Consensus pattern (14 bp):
GGCTAAGTCCTGAA
Found at i:32127159 original size:53 final size:53
Alignment explanation
Indices: 32127079--32127187 Score: 182
Period size: 53 Copynumber: 2.1 Consensus size: 53
32127069 AAAATATCCG
* *
32127079 GGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCTGAA
1 GGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGGGCTAAGTCCCGAA
* *
32127132 GGCTAAGTCCTGAAGGCATTCGTGCTGGTATTATATCTGGGCTAAGTCCCGAA
1 GGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGGGCTAAGTCCCGAA
32127185 GGC
1 GGC
32127188 ATTCGTGCTG
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (53 bp):
GGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGGGCTAAGTCCCGAA
Found at i:32127186 original size:39 final size:39
Alignment explanation
Indices: 32127132--32127301 Score: 250
Period size: 39 Copynumber: 4.3 Consensus size: 39
32127122 AAGTCCTGAA
* *
32127132 GGCTAAGTCCTGAAGGCATTCGTGCTGGTATTATATCTG
1 GGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCG
**
32127171 GGCTAAGTCCCGAAGGCATTCGTGCTGGTGCTATATCCG
1 GGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCG
* * *
32127210 GGCTAAGTCCCGAAGGCATTCGTGCTAGTGTTATATTCG
1 GGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCG
*
32127249 GGCTAAGTCCCGAAGGCATTTGTGCTGGTATTATATCCG
1 GGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCG
32127288 GGCTTAAAGTCCCG
1 GGC-T-AAGTCCCG
32127302 CATGCTTTGT
Statistics
Matches: 118, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 109 0.92
40 1 0.01
41 8 0.07
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCG
Found at i:32133693 original size:12 final size:13
Alignment explanation
Indices: 32133676--32133713 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
32133666 ATCCTGGAAT
32133676 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
32133688 ATTAAGAACACATA
1 ATTAAGAACA-AGA
32133702 ATTAAGAACAAG
1 ATTAAGAACAAG
32133714 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:32134984 original size:20 final size:20
Alignment explanation
Indices: 32134931--32134984 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
32134921 CACGGCCTGC
32134931 CCACACGAGCGTGTCCCAAG
1 CCACACGAGCGTGTCCCAAG
* * *
32134951 CCATATGAGTGTGTCCCAAG
1 CCACACGAGCGTGTCCCAAG
*
32134971 CCACACGGGCGTGT
1 CCACACGAGCGTGT
32134985 GGCTCTTAAA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.22, C:0.33, G:0.28, T:0.17
Consensus pattern (20 bp):
CCACACGAGCGTGTCCCAAG
Found at i:32137657 original size:31 final size:33
Alignment explanation
Indices: 32137597--32137658 Score: 85
Period size: 32 Copynumber: 1.9 Consensus size: 33
32137587 AAAATAAGCT
32137597 TGATATTGTTAATATAATTTGGTTGGTTTAAAA
1 TGATATTGTTAATATAATTTGGTTGGTTTAAAA
*
32137630 TGAT-TTGTTTATAT-ATTTGAGTT-GTTTAA
1 TGATATTGTTAATATAATTTG-GTTGGTTTAA
32137659 TTGCTTATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
31 11 0.41
32 12 0.44
33 4 0.15
ACGTcount: A:0.29, C:0.00, G:0.18, T:0.53
Consensus pattern (33 bp):
TGATATTGTTAATATAATTTGGTTGGTTTAAAA
Found at i:32140199 original size:40 final size:40
Alignment explanation
Indices: 32140125--32140386 Score: 366
Period size: 40 Copynumber: 6.6 Consensus size: 40
32140115 AACCCAAGTA
* * *
32140125 CCTTCGGGATTTAG-CCGGATAT-AGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAATG
* * *
32140164 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* *
32140204 CCTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
32140244 CCTTCGGGACTTAGCCCGAATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* *
32140284 CCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* *
32140324 CCTTCGGGACTTAGCCCGGATATAATCACTAGCAAAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* *
32140364 CCTTCGGGACATAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
32140387 CATTCGAATA
Statistics
Matches: 203, Mismatches: 18, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
39 12 0.06
40 188 0.93
41 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
Found at i:32148793 original size:79 final size:81
Alignment explanation
Indices: 32148651--32148833 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 81
32148641 TACTCGTTCA
* *
32148651 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* *
32148715 TTTAGT-AGC-TCGCACC
66 TATAGTCA-CTTAGCA-C
**
32148731 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
*
32148793 ATATGGTCACTTAGCAC
65 ATATAGTCACTTAGCAC
*
32148810 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
32148834 CATCATTCGA
Statistics
Matches: 90, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
78 3 0.03
79 58 0.64
80 29 0.32
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTCACTTAGCAC
Found at i:32148833 original size:40 final size:40
Alignment explanation
Indices: 32148630--32148833 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
32148620 CAGAATTTAA
** *
32148630 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32148670 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
32148710 CCGGATTTAGTAGCTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
32148749 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
32148789 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
32148829 CCGGA
1 CCGGA
32148834 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:32161820 original size:26 final size:26
Alignment explanation
Indices: 32161791--32161841 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
32161781 GTCTATCGCG
32161791 AGGCTGATGCATGTCCCAGACATGTA
1 AGGCTGATGCATGTCCCAGACATGTA
32161817 AGGCTGATGCATGTCCCAGACATGT
1 AGGCTGATGCATGTCCCAGACATGT
32161842 CTTAAACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (26 bp):
AGGCTGATGCATGTCCCAGACATGTA
Found at i:32161933 original size:46 final size:47
Alignment explanation
Indices: 32161817--32161943 Score: 168
Period size: 48 Copynumber: 2.7 Consensus size: 47
32161807 CAGACATGTA
* *
32161817 AGGCTGATGCATGTCCCAGACATGTCTTAAACTGGCTTAAATATCTTG
1 AGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTAAATA-CTTG
* *
32161865 AGGCCGATGCATGTCCCAGACATGTCTTACGCTGGCTCT-CATA-TTG
1 AGGCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TAAATACTTG
* *
32161911 TGGCCGATGCATGTCCCAGACATATCTTACACT
1 AGGCCGATGCATGTCCCAGACATGTCTTACACT
32161944 AGCACACATA
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
46 33 0.46
48 37 0.52
49 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (47 bp):
AGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTAAATACTTG
Found at i:32161954 original size:46 final size:46
Alignment explanation
Indices: 32161817--32161954 Score: 159
Period size: 46 Copynumber: 3.0 Consensus size: 46
32161807 CAGACATGTA
* * * * *
32161817 AGGCTGATGCATGTCCCAGACATGTCTTAAACTGGCTTAAATATCTTG
1 AGGCCGATGCATGTCCCAGACATGTCTTACACTGGC--ACACATATTG
* * *
32161865 AGGCCGATGCATGTCCCAGACATGTCTTACGCTGGCTCTCATATTG
1 AGGCCGATGCATGTCCCAGACATGTCTTACACTGGCACACATATTG
* * *
32161911 TGGCCGATGCATGTCCCAGACATATCTTACACTAGCACACATAT
1 AGGCCGATGCATGTCCCAGACATGTCTTACACTGGCACACATAT
32161955 CACCCAATAT
Statistics
Matches: 76, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
46 43 0.57
48 33 0.43
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.28
Consensus pattern (46 bp):
AGGCCGATGCATGTCCCAGACATGTCTTACACTGGCACACATATTG
Found at i:32162672 original size:13 final size:13
Alignment explanation
Indices: 32162654--32162680 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32162644 CTAAAAGTAC
32162654 AAAAATCATCAAA
1 AAAAATCATCAAA
32162667 AAAAATCATCAAA
1 AAAAATCATCAAA
32162680 A
1 A
32162681 TCACTTACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.15, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAAATCATCAAA
Found at i:32164632 original size:31 final size:31
Alignment explanation
Indices: 32164596--32164658 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
32164586 AACGTAAAGT
32164596 AAGTTAACATAAAGGCTATTAAAATCTCCTA
1 AAGTTAACATAAAGGCTATTAAAATCTCCTA
32164627 AAGTTAACATAAAGGCTATTAAAATCTCCTA
1 AAGTTAACATAAAGGCTATTAAAATCTCCTA
32164658 A
1 A
32164659 TCATAGGCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.46, C:0.16, G:0.10, T:0.29
Consensus pattern (31 bp):
AAGTTAACATAAAGGCTATTAAAATCTCCTA
Found at i:32170008 original size:22 final size:23
Alignment explanation
Indices: 32169983--32170028 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
32169973 CAACTAAATC
32169983 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
32170005 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
32170028 A
1 A
32170029 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:32170034 original size:23 final size:23
Alignment explanation
Indices: 32169990--32170034 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
32169980 ATCAATTCAA
*
32169990 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
32170013 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
32170035 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:32172654 original size:131 final size:131
Alignment explanation
Indices: 32172420--32172678 Score: 491
Period size: 131 Copynumber: 2.0 Consensus size: 131
32172410 TCACTCTAAT
32172420 AACTTTTACACCTATTACAATTTAGTCCTTTTCATTTAATTGACTACCCAAACATTAAAATTTCC
1 AACTTTTACACCTATTACAATTTAGTCCTTTTCATTTAATTGACTACCCAAACATTAAAATTTCC
* *
32172485 TAACGAAATTTTAATACCACATTAATAGCATTTCATAAATATTTATAAATTTATTTTTGACTCAG
66 TAACGAAATTTTAATACCACATTAATAACATTTCATAAATATTTATAAAATTATTTTTGACTCAG
32172550 C
131 C
*
32172551 AACTTTTACACTTATTACAATTTAGTCCTTTTCATTTAATTGACTACCCAAACATTAAAATTTCC
1 AACTTTTACACCTATTACAATTTAGTCCTTTTCATTTAATTGACTACCCAAACATTAAAATTTCC
32172616 TAACGAAATTTTAATACCACATTAATAACATTTCATAAATATTTATAAAATTATTTTTGACTC
66 TAACGAAATTTTAATACCACATTAATAACATTTCATAAATATTTATAAAATTATTTTTGACTC
32172679 GGTTTTACGA
Statistics
Matches: 125, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
131 125 1.00
ACGTcount: A:0.37, C:0.18, G:0.04, T:0.41
Consensus pattern (131 bp):
AACTTTTACACCTATTACAATTTAGTCCTTTTCATTTAATTGACTACCCAAACATTAAAATTTCC
TAACGAAATTTTAATACCACATTAATAACATTTCATAAATATTTATAAAATTATTTTTGACTCAG
C
Found at i:32174238 original size:34 final size:34
Alignment explanation
Indices: 32174153--32174246 Score: 86
Period size: 33 Copynumber: 2.8 Consensus size: 34
32174143 CAGTGCAAAG
* * **
32174153 CAGTATGGGCCTAAGCCCA-TATCAGTGGCAATAT
1 CAGTGTGGGCCTTAGCCCATTA-CAGTAACAATAT
* * *
32174187 CAGAGT-GGCTTTAGCCCATTACAGTAACAGTAT
1 CAGTGTGGGCCTTAGCCCATTACAGTAACAATAT
32174220 CAGTGTGGGCCTTAGCCCAATT-CAGTA
1 CAGTGTGGGCCTTAGCCC-ATTACAGTA
32174247 TAGTATAAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
33 24 0.50
34 21 0.44
35 3 0.06
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (34 bp):
CAGTGTGGGCCTTAGCCCATTACAGTAACAATAT
Found at i:32178812 original size:27 final size:26
Alignment explanation
Indices: 32178775--32178888 Score: 111
Period size: 27 Copynumber: 4.2 Consensus size: 26
32178765 AGCATGGCTG
*
32178775 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
*
32178801 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
**
32178828 CCAGAAACAGATATTTGTGGTAGAGCCA
1 CCAG-AACAGATA-TTGTGACAGAGCCA
* * * * *
32178856 CCGGATCAAATATTTATGGCAGAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
32178883 CCAGAA
1 CCAGAA
32178889 TGCTTCCTCC
Statistics
Matches: 75, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 5 0.07
27 53 0.71
28 17 0.23
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:32178869 original size:54 final size:55
Alignment explanation
Indices: 32178775--32178888 Score: 144
Period size: 55 Copynumber: 2.1 Consensus size: 55
32178765 AGCATGGCTG
* * *
32178775 CCAG-AACAGATATTGTGACAGAGTCACCAGATACAGATA-TTGTGGCAGAGCCA
1 CCAGAAACAGATATTGTGACAGAGCCACCAGATACAAATATTTATGGCAGAGCCA
** *
32178828 CCAGAAACAGATATTTGTGGTAGAGCCACCGGAT-CAAATATTTATGGCAGAGCCA
1 CCAGAAACAGATA-TTGTGACAGAGCCACCAGATACAAATATTTATGGCAGAGCCA
32178883 CCAGAA
1 CCAGAA
32178889 TGCTTCCTCC
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
53 4 0.08
54 13 0.25
55 35 0.67
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (55 bp):
CCAGAAACAGATATTGTGACAGAGCCACCAGATACAAATATTTATGGCAGAGCCA
Found at i:32179011 original size:24 final size:25
Alignment explanation
Indices: 32178984--32179037 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 25
32178974 TTTCAGTCAA
*
32178984 AATTAAC-CCTAGGGGTATAATGGT
1 AATTAACACCTAGGGGTATAATAGT
**
32179008 AATTTTGCACCTAGGGGTATAATAGT
1 AA-TTAACACCTAGGGGTATAATAGT
32179034 AATT
1 AATT
32179038 TTCATTCTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
24 2 0.08
25 5 0.20
26 18 0.72
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (25 bp):
AATTAACACCTAGGGGTATAATAGT
Found at i:32188946 original size:49 final size:49
Alignment explanation
Indices: 32188889--32188985 Score: 185
Period size: 49 Copynumber: 2.0 Consensus size: 49
32188879 AATGATTAAG
32188889 GTTGAAAACGTTTGCTTAGCGGAAGTCTTACTCGTATTCGTGTTATTTA
1 GTTGAAAACGTTTGCTTAGCGGAAGTCTTACTCGTATTCGTGTTATTTA
*
32188938 GTTGAAAACGTTTGCTTAGTGGAAGTCTTACTCGTATTCGTGTTATTT
1 GTTGAAAACGTTTGCTTAGCGGAAGTCTTACTCGTATTCGTGTTATTT
32188986 TGAAATCACT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.22, C:0.13, G:0.23, T:0.42
Consensus pattern (49 bp):
GTTGAAAACGTTTGCTTAGCGGAAGTCTTACTCGTATTCGTGTTATTTA
Found at i:32197615 original size:28 final size:28
Alignment explanation
Indices: 32197547--32197625 Score: 99
Period size: 27 Copynumber: 2.9 Consensus size: 28
32197537 CTGCCAGAAC
* * *
32197547 AATATAGTGACAGAGTCACCA-AATACA
1 AATATTGTGGCAGAGCCACCAGAATACA
32197574 AATATTGTGGCAGAGCCACCAGAA-ACA
1 AATATTGTGGCAGAGCCACCAGAATACA
*
32197601 GATATTTGTGGCAGAGCCACCAGAA
1 AATA-TTGTGGCAGAGCCACCAGAA
32197626 CGCTTCCTCC
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
27 24 0.52
28 22 0.48
ACGTcount: A:0.41, C:0.20, G:0.22, T:0.18
Consensus pattern (28 bp):
AATATTGTGGCAGAGCCACCAGAATACA
Found at i:32197756 original size:27 final size:28
Alignment explanation
Indices: 32197726--32197791 Score: 84
Period size: 26 Copynumber: 2.5 Consensus size: 28
32197716 GTGAAAATTA
*
32197726 ACCTTAGGGGTATAATGGTAATTTT-GC
1 ACCTTAGGGGTATAATAGTAATTTTCGC
* *
32197753 ACC-TAGGGCTATAATAGTAATTTTCGT
1 ACCTTAGGGGTATAATAGTAATTTTCGC
32197780 A-CTTAGGGGTAT
1 ACCTTAGGGGTAT
32197792 TTTAGTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 20 0.61
27 13 0.39
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.36
Consensus pattern (28 bp):
ACCTTAGGGGTATAATAGTAATTTTCGC
Found at i:32202290 original size:15 final size:15
Alignment explanation
Indices: 32202270--32202299 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32202260 AACAAATGGT
32202270 CTAATTACCATCTAA
1 CTAATTACCATCTAA
32202285 CTAATTACCATCTAA
1 CTAATTACCATCTAA
32202300 GGACCTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33
Consensus pattern (15 bp):
CTAATTACCATCTAA
Found at i:32210362 original size:34 final size:35
Alignment explanation
Indices: 32210310--32210375 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
32210300 CTAGCTACAG
*
32210310 TCTCAGTCTTCTAAAGTTTTCAGT-TTTCCCTACTA
1 TCTCAGTCTTCTAAAG-TTTCAGTATTACCCTACTA
*
32210345 TCTCAGT-TTCTACAGTTTCAGTATTACCCTA
1 TCTCAGTCTTCTAAAGTTTCAGTATTACCCTA
32210376 ACTACAGAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 7 0.25
34 14 0.50
35 7 0.25
ACGTcount: A:0.21, C:0.26, G:0.09, T:0.44
Consensus pattern (35 bp):
TCTCAGTCTTCTAAAGTTTCAGTATTACCCTACTA
Found at i:32218144 original size:15 final size:16
Alignment explanation
Indices: 32218113--32218145 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
32218103 CGTAACTTTT
32218113 AACTTAATTAACATTTA
1 AACTTAATT-ACATTTA
32218130 AACTTAATT-CATTTA
1 AACTTAATTACATTTA
32218145 A
1 A
32218146 TTGCTTACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.42
Consensus pattern (16 bp):
AACTTAATTACATTTA
Found at i:32219618 original size:28 final size:27
Alignment explanation
Indices: 32219544--32219687 Score: 183
Period size: 28 Copynumber: 5.4 Consensus size: 27
32219534 GATATGACAC
* *
32219544 TGTGCTAAGTGAAATAAGACCATGACA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
*
32219571 --T-CTAAGTGAAAGAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
*
32219595 GTGTGCTAAGTGAAATAAGACCATGGCA
1 -TGTGCTAAGTGAAATAAGTCCATGGCA
32219623 --T-CTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGC-A
32219648 TGTGCTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
32219675 TGGTGCTAAGTGA
1 T-GTGCTAAGTGA
32219688 GAAATTTCCC
Statistics
Matches: 102, Mismatches: 6, Indels: 17
0.82 0.05 0.14
Matches are distributed among these distances:
24 41 0.40
25 3 0.03
27 4 0.04
28 54 0.53
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.24
Consensus pattern (27 bp):
TGTGCTAAGTGAAATAAGTCCATGGCA
Found at i:32219672 original size:52 final size:52
Alignment explanation
Indices: 32219544--32219675 Score: 228
Period size: 52 Copynumber: 2.5 Consensus size: 52
32219534 GATATGACAC
* *
32219544 TGTGCTAAGTGAAATAAGACCATGACATCTAAGTGAAAGAAGTCCATGGCAG
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAAGAAGTCCATGGCAA
*
32219596 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAAGAAGTCCATGGCAA
*
32219648 TGTGCTAAGTGAAATAAGTCCATGGCAT
1 TGTGCTAAGTGAAATAAGACCATGGCAT
32219676 GGTGCTAAGT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 76 1.00
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.23
Consensus pattern (52 bp):
TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAAGAAGTCCATGGCAA
Found at i:32219766 original size:51 final size:51
Alignment explanation
Indices: 32219711--32219910 Score: 278
Period size: 51 Copynumber: 3.9 Consensus size: 51
32219701 TGAACCTTAG
*
32219711 GAATAAAATAGCTTTGGACACAAGTGTGGTATTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * * *
32219762 GAATATAATAGCTTTAGACACAAGTGTGGTACTAAGTTAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * *
32219813 GAATAAAATAGCTTCGGACACAAGTGTGGTACTATGTGAAGGCCATTTTCT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
32219864 GAATAAAATAACTTTGG-CTACAGAG-GTTGTACTATGTGAAGGCCACT
1 GAATAAAATAGCTTTGGAC-ACA-AGTGTGGTACTATGTGAAGGCCACT
32219911 GTGTAACCAT
Statistics
Matches: 131, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
50 1 0.01
51 128 0.98
52 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:32222403 original size:24 final size:24
Alignment explanation
Indices: 32222376--32222421 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
32222366 ATTTTTGGAC
32222376 CAAATTTCAATTTACCTATAGAAA
1 CAAATTTCAATTTACCTATAGAAA
32222400 CAAATTTCAATTTACCTATAGA
1 CAAATTTCAATTTACCTATAGA
32222422 CTAACTTCGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.17, G:0.04, T:0.35
Consensus pattern (24 bp):
CAAATTTCAATTTACCTATAGAAA
Found at i:32226366 original size:52 final size:52
Alignment explanation
Indices: 32226295--32226393 Score: 189
Period size: 52 Copynumber: 1.9 Consensus size: 52
32226285 GAGAATCCAT
*
32226295 GGCTAGGGTTTTCAAGCTTCCCAAGCTCAATTGTAAGTCTGTTCTAATCCCG
1 GGCTAGGGTTTTCAAGCTTCCCAAGCTCAATTGTAAGTCCGTTCTAATCCCG
32226347 GGCTAGGGTTTTCAAGCTTCCCAAGCTCAATTGTAAGTCCGTTCTAA
1 GGCTAGGGTTTTCAAGCTTCCCAAGCTCAATTGTAAGTCCGTTCTAA
32226394 CCCTATTTTT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.32
Consensus pattern (52 bp):
GGCTAGGGTTTTCAAGCTTCCCAAGCTCAATTGTAAGTCCGTTCTAATCCCG
Found at i:32227679 original size:66 final size:63
Alignment explanation
Indices: 32227522--32227679 Score: 167
Period size: 66 Copynumber: 2.5 Consensus size: 63
32227512 CATTATGATG
* * * *
32227522 TGGCTAGGTCGCATGGGTGATACT-A-TGTGTACACCAGTAGACAAGAGAGCTACGGGATATA
1 TGGCTAGGTCGCATGGGTGGTACTAAGTGAGGACACCAGTAGACAAGAGAGCTACGGGATAAA
* * * * *
32227583 TGTAGCTAGGTCGTATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGATA
1 TG--GCTAGGTCGCATGGGTGGTACTAAGTG-AGGACACCA-GTAGACAAGAGAGCTACGGGATA
32227648 AA
62 AA
*
32227650 CTGGCTAGGTCACATGGGTGGTACTAAGTG
1 -TGGCTAGGTCGCATGGGTGGTACTAAGTG
32227680 TTCACCATGT
Statistics
Matches: 76, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
61 2 0.03
63 17 0.22
64 1 0.01
65 2 0.03
66 29 0.38
67 23 0.30
68 2 0.03
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.23
Consensus pattern (63 bp):
TGGCTAGGTCGCATGGGTGGTACTAAGTGAGGACACCAGTAGACAAGAGAGCTACGGGATAAA
Found at i:32227701 original size:63 final size:62
Alignment explanation
Indices: 32227522--32227701 Score: 184
Period size: 63 Copynumber: 2.8 Consensus size: 62
32227512 CATTATGATG
* * *
32227522 TGGCTAGGTCGCATGGGTGATACTATGTGTACACCA-GTAGACAAGAGAGCTACGGGATATA
1 TGGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGGGATAAA
* * * * * *
32227583 TGTAGCTAGGTCGTATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGATA
1 TG--GCTAGGTCGCATGGGTGGTACTAAGT---GTACACCATGTAGACAAGAGAGCTACGGGATA
32227648 AA
61 AA
* *
32227650 CTGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 -TGGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGC
32227702 CGAACTATAT
Statistics
Matches: 95, Mismatches: 16, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
61 2 0.02
62 1 0.01
63 39 0.41
66 28 0.29
67 23 0.24
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (62 bp):
TGGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGGGATAAA
Found at i:32241461 original size:22 final size:22
Alignment explanation
Indices: 32241433--32241507 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
32241423 TTCCACATCC
32241433 ATCACATTGGCCTTTCGGCCTT
1 ATCACATTGGCCTTTCGGCCTT
** * *
32241455 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CTTTCGGCCTT
*
32241479 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCTTTCGGCCTT
32241502 ATCACA
1 ATCACA
32241508 CATACACATG
Statistics
Matches: 39, Mismatches: 9, Indels: 10
0.67 0.16 0.17
Matches are distributed among these distances:
22 17 0.44
23 5 0.13
24 5 0.13
25 12 0.31
ACGTcount: A:0.25, C:0.31, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCTTTCGGCCTT
Found at i:32241468 original size:47 final size:47
Alignment explanation
Indices: 32241405--32241678 Score: 415
Period size: 47 Copynumber: 5.7 Consensus size: 47
32241395 CCCTTCGGGA
* * * *
32241405 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCTTTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
32241452 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
32241499 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
32241546 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
32241595 CTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
32241642 CTTATCACATATATATACACTTTCACATTCATCACAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACAT
32241679 CATGTACAGA
Statistics
Matches: 209, Mismatches: 12, Indels: 10
0.90 0.05 0.04
Matches are distributed among these distances:
46 1 0.00
47 138 0.66
49 69 0.33
50 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:32241587 original size:96 final size:96
Alignment explanation
Indices: 32241405--32241678 Score: 419
Period size: 96 Copynumber: 2.9 Consensus size: 96
32241395 CCCTTCGGGA
** * * * *
32241405 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCTTTCGGCCTTATCAC--ATATATAC
1 CTTATCACACATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
32241468 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
32241499 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
1 CTTATCACACATACACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
32241563 CACTTTCACATTCATCACATTGGCCATTCGGC
65 CACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
32241595 CTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACACATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
32241660 ACTTTCACATTCATCACAT
66 ACTTTCACATTCATCACAT
32241679 CATGTACAGA
Statistics
Matches: 165, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
93 1 0.01
94 47 0.28
96 116 0.70
97 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (96 bp):
CTTATCACACATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:32252320 original size:43 final size:43
Alignment explanation
Indices: 32252195--32252358 Score: 154
Period size: 43 Copynumber: 3.8 Consensus size: 43
32252185 CGGAAAGCTC
* * *
32252195 GTACAATGCCAATATCCCAGACGTGGTCTTACATGT-AATCAA
1 GTACAATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAA
* * * * * *
32252237 ATATCGATGCCACTGTCCCAGATAAGGTCTTACAC-AAAATCAA
1 GTA-CAATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAA
* * *
32252280 GTACGATGCCAATGTCCTAGTCATGGTCTTACACGTAAATCATAA
1 GTACAATGCCAATGTCCCAGACATGGTCTTACACGTAAATC--AA
* *
32252325 GT-CAATGCCAACGTCCCAGACGTGGTCTTACACG
1 GTACAATGCCAATGTCCCAGACATGGTCTTACACG
32252359 AAAACACATA
Statistics
Matches: 96, Mismatches: 21, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
42 28 0.29
43 37 0.39
44 27 0.28
45 4 0.04
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
GTACAATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAA
Found at i:32252344 original size:86 final size:86
Alignment explanation
Indices: 32252195--32252362 Score: 189
Period size: 85 Copynumber: 2.0 Consensus size: 86
32252185 CGGAAAGCTC
* * * *
32252195 GTACAATGCCAATATCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGAT
1 GTACAATGCCAATATCCCAGACATGGTCTTACACGTAATCAAATATCAATGCCACTGTCCCAGAC
32252260 AAGGTCTTACAC-AAAATCAA
66 AAGGTCTTACACGAAAATCAA
* * * * *
32252280 GTACGATGCCAATGTCCTAGTCATGGTCTTACACGTAAATCATAA-GTCAATGCCAAC-GTCCCA
1 GTACAATGCCAATATCCCAGACATGGTCTTACACGT-AATCA-AATATCAATGCC-ACTGTCCCA
**
32252343 GACGTGGTCTTACACGAAAA
63 GACAAGGTCTTACACGAAAA
32252363 CACATATCGG
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
85 30 0.44
86 30 0.44
87 8 0.12
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.24
Consensus pattern (86 bp):
GTACAATGCCAATATCCCAGACATGGTCTTACACGTAATCAAATATCAATGCCACTGTCCCAGAC
AAGGTCTTACACGAAAATCAA
Found at i:32253684 original size:19 final size:19
Alignment explanation
Indices: 32253656--32253696 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
32253646 TTCATCATAA
* *
32253656 TAAAATAAAATAATAAAAG
1 TAAAACAAAACAATAAAAG
*
32253675 TAAAACAAAACCATAAAAG
1 TAAAACAAAACAATAAAAG
32253694 TAA
1 TAA
32253697 TTAAGCGGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.71, C:0.07, G:0.05, T:0.17
Consensus pattern (19 bp):
TAAAACAAAACAATAAAAG
Found at i:32254204 original size:28 final size:28
Alignment explanation
Indices: 32254156--32254246 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
32254146 GTGACAGAGT
*
32254156 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCAGTGC
*
32254185 CACCAGAACAGATAATTTGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCAGTGC
32254213 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGATAATTTGTGGCAGT-GC
32254241 CACCAG
1 CACCAG
32254247 GACGCTTCCT
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
28 51 0.88
29 7 0.12
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGTGC
Found at i:32254392 original size:28 final size:28
Alignment explanation
Indices: 32254352--32254472 Score: 197
Period size: 28 Copynumber: 4.3 Consensus size: 28
32254342 AAATTAACCC
*
32254352 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
32254380 TAGGGGTAAAAAGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
* *
32254408 TAGAGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
32254436 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
32254464 TAGGGGTAT
1 TAGGGGTAT
32254473 TCTAGTACAT
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 87 1.00
ACGTcount: A:0.34, C:0.07, G:0.26, T:0.33
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:32254735 original size:8 final size:8
Alignment explanation
Indices: 32254719--32254750 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
32254709 CCCAAAATAC
32254719 CGGCTTTT
1 CGGCTTTT
*
32254727 CGGCATTT
1 CGGCTTTT
32254735 CGGCTTTT
1 CGGCTTTT
32254743 CGGCTTTT
1 CGGCTTTT
32254751 GTCGATCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.25, T:0.47
Consensus pattern (8 bp):
CGGCTTTT
Found at i:32263103 original size:28 final size:28
Alignment explanation
Indices: 32263070--32263156 Score: 104
Period size: 28 Copynumber: 3.1 Consensus size: 28
32263060 CACATACCTA
* *
32263070 TATATGGCCCACAAGGCCCAATCTC-TT
1 TATATGGCCCACTAGGCCCAATCACATT
*
32263097 TCATATGGCCTACTAGGCCCAATCACATT
1 T-ATATGGCCCACTAGGCCCAATCACATT
* *
32263126 TATGTGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCACTAGGCCC-AATCACATT
32263155 TA
1 TA
32263157 CAGTCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
27 1 0.02
28 36 0.71
29 14 0.27
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.28
Consensus pattern (28 bp):
TATATGGCCCACTAGGCCCAATCACATT
Found at i:32263419 original size:16 final size:16
Alignment explanation
Indices: 32263400--32263435 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
32263390 ACATTTTAGT
32263400 TTTTCAGCATTTTGGC
1 TTTTCAGCATTTTGGC
**
32263416 TTTTTGGCATTTTGGC
1 TTTTCAGCATTTTGGC
32263432 TTTT
1 TTTT
32263436 GTCGATCTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.08, C:0.14, G:0.19, T:0.58
Consensus pattern (16 bp):
TTTTCAGCATTTTGGC
Found at i:32272537 original size:14 final size:15
Alignment explanation
Indices: 32272520--32272548 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
32272510 TCACGAAAAT
32272520 TTCACACAT-ATAAA
1 TTCACACATAATAAA
32272534 TTCACACATAATAAA
1 TTCACACATAATAAA
32272549 CATAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:32274623 original size:40 final size:40
Alignment explanation
Indices: 32274425--32274607 Score: 287
Period size: 40 Copynumber: 4.6 Consensus size: 40
32274415 TGGATGATAA
* *
32274425 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
32274465 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
32274505 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
32274545 CTGGGCTATGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
32274585 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
32274608 CGAGTGAGTA
Statistics
Matches: 134, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 1 0.01
40 133 0.99
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:32274623 original size:80 final size:79
Alignment explanation
Indices: 32274425--32274642 Score: 273
Period size: 80 Copynumber: 2.7 Consensus size: 79
32274415 TGGATGATAA
*
32274425 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGT-GACTAGTTTCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTAG-CTA-TATCGGGCTAAGTCCCGAAGGCATT
*
32274488 TGTGCGAGTTACTATAT
63 GGTGCGAGTTACTATAT
* *
32274505 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCTGGGCTATGTCCCGAAGGCATTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAG-TAGCTATATC-GGGCTAAGTCCCGAAGGCATTG
32274569 GTGCGAGTTACTATAT
64 GTGCGAGTTACTATAT
* * * * *
32274585 CCGGGCTATGTCCCGAAGGCATTCGAGTGAGTAGCTATACTC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTAGCTATA-TCGGGCTAAGTCCCGAAGG
32274643 TACTTGGCTT
Statistics
Matches: 121, Mismatches: 11, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
79 18 0.15
80 100 0.83
81 3 0.02
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTAGCTATATCGGGCTAAGTCCCGAAGGCATTGGT
GCGAGTTACTATAT
Found at i:32282665 original size:40 final size:40
Alignment explanation
Indices: 32282610--32282787 Score: 218
Period size: 40 Copynumber: 4.5 Consensus size: 40
32282600 TGGATGATAA
* * * *
32282610 CCGGGCCAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
32282650 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
32282690 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
32282730 CCGGGCTATGTCTCGAAGGCATTCGAGCGAG-TAGCTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* * *
32282769 CCCGGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
32282788 TACTTGGCTT
Statistics
Matches: 123, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
39 17 0.14
40 106 0.86
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:32285016 original size:42 final size:41
Alignment explanation
Indices: 32284964--32285118 Score: 177
Period size: 42 Copynumber: 3.7 Consensus size: 41
32284954 CAAAGACTAT
*
32284964 GTGTAAGACCATATCTGGGATATGGCATCAATTTGAGACTTC
1 GTGTAAGACCATATCTGGGATATGGCATCAATCTGAGA-TTC
* *
32285006 GTGTAAGACCATATCTGGGATATGGCATCAATGTGGGATTTC
1 GTGTAAGACCATATCTGGGATATGGCATCAATCTGAGA-TTC
* * * *
32285048 GTGTAAGACCATAGCTAGGCTATTGGCATCGATACT-AGATTAC
1 GTGTAAGACCATATCTGGGATA-TGGCATCAAT-CTGAGATT-C
* *
32285091 ATGTAAGACCATATATGGGATATGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
32285119 TGGTATGGTA
Statistics
Matches: 96, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
42 66 0.69
43 29 0.30
44 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (41 bp):
GTGTAAGACCATATCTGGGATATGGCATCAATCTGAGATTC
Found at i:32285290 original size:15 final size:16
Alignment explanation
Indices: 32285264--32285293 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
32285254 ATGAACCGTC
32285264 AGTAAGGTTATGATTG
1 AGTAAGGTTATGATTG
32285280 AGTAA-GTTATGATT
1 AGTAAGGTTATGATT
32285294 ATAAGATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.33, C:0.00, G:0.27, T:0.40
Consensus pattern (16 bp):
AGTAAGGTTATGATTG
Found at i:32286277 original size:39 final size:39
Alignment explanation
Indices: 32286221--32286299 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
32286211 GTTAGGGACA
32286221 TGGGCGTGTGTGACCACACGGCTTGCCCACACGGGCGTG
1 TGGGCGTGTGTGACCACACGGCTTGCCCACACGGGCGTG
*
32286260 TGGGCGTGTGTGCCCACACGGCTTGCCCACACGGGCGTG
1 TGGGCGTGTGTGACCACACGGCTTGCCCACACGGGCGTG
32286299 T
1 T
32286300 CCCAAGCCAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.11, C:0.32, G:0.38, T:0.19
Consensus pattern (39 bp):
TGGGCGTGTGTGACCACACGGCTTGCCCACACGGGCGTG
Found at i:32286334 original size:19 final size:20
Alignment explanation
Indices: 32286286--32286338 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
32286276 CACGGCTTGC
32286286 CCACACGGGCGTGTCCCAAG
1 CCACACGGGCGTGTCCCAAG
*
32286306 CCATACGGGCGTGTCCCAAG
1 CCACACGGGCGTGTCCCAAG
32286326 -CACACGGGCGTGT
1 CCACACGGGCGTGT
32286339 GGCTATTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 12 0.39
20 19 0.61
ACGTcount: A:0.19, C:0.36, G:0.32, T:0.13
Consensus pattern (20 bp):
CCACACGGGCGTGTCCCAAG
Found at i:32292210 original size:24 final size:24
Alignment explanation
Indices: 32292178--32292257 Score: 58
Period size: 24 Copynumber: 3.4 Consensus size: 24
32292168 CTTATTAACT
*
32292178 TAAGATTCACCCATCTTCGTTGCC
1 TAAGGTTCACCCATCTTCGTTGCC
* ** *
32292202 TAAGGTTCAACTCCTTCTGAGTAG-C
1 TAAGGTTC-AC-CCATCTTCGTTGCC
* *
32292227 -AA-CTCCACCCATCTTCGTTGCC
1 TAAGGTTCACCCATCTTCGTTGCC
32292249 TAAGGTTCA
1 TAAGGTTCA
32292258 ACTCCTTCTC
Statistics
Matches: 38, Mismatches: 13, Indels: 10
0.62 0.21 0.16
Matches are distributed among these distances:
21 8 0.21
22 3 0.08
23 4 0.11
24 12 0.32
25 3 0.08
26 8 0.21
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.31
Consensus pattern (24 bp):
TAAGGTTCACCCATCTTCGTTGCC
Found at i:32292761 original size:64 final size:64
Alignment explanation
Indices: 32292655--32292778 Score: 203
Period size: 64 Copynumber: 1.9 Consensus size: 64
32292645 AACCCTCCAC
* *
32292655 AAACCTTCTGTAGTAGCCTGCTAACCCTAAAAAACTCTGAATTTCCGATACTAACCTAGGCCAT
1 AAACCTTCTGTAGTAACCTGCTAACCCTAAAAAACTCCGAATTTCCGATACTAACCTAGGCCAT
* * *
32292719 AAACCTTCTGTAGTAACCTGCTACCCCTAGAAAACTCCGAATTTCCGATACTGACCTAGG
1 AAACCTTCTGTAGTAACCTGCTAACCCTAAAAAACTCCGAATTTCCGATACTAACCTAGG
32292779 TGGCTTCCAT
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 55 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (64 bp):
AAACCTTCTGTAGTAACCTGCTAACCCTAAAAAACTCCGAATTTCCGATACTAACCTAGGCCAT
Found at i:32297332 original size:54 final size:54
Alignment explanation
Indices: 32297250--32297357 Score: 189
Period size: 54 Copynumber: 2.0 Consensus size: 54
32297240 ATTGAACTAA
* *
32297250 GAAAGGGTGTTCGGTACACACCTGATTCGCGACGACTGCTACTGAGATCTCTTC
1 GAAAGGGTGTTCAGTACACACCTGATTCGCGACAACTGCTACTGAGATCTCTTC
*
32297304 GAAAGGGTGTTCAGTACACACCTGATTCGTGACAACTGCTACTGAGATCTCTTC
1 GAAAGGGTGTTCAGTACACACCTGATTCGCGACAACTGCTACTGAGATCTCTTC
32297358 CGATGTCCTA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (54 bp):
GAAAGGGTGTTCAGTACACACCTGATTCGCGACAACTGCTACTGAGATCTCTTC
Found at i:32299801 original size:51 final size:50
Alignment explanation
Indices: 32299746--32299845 Score: 155
Period size: 51 Copynumber: 2.0 Consensus size: 50
32299736 GGTGGGCGTC
* * * *
32299746 AAAGGTAACCCACTGACAAAGTCCATTGTTACTCTTTCCTACTTCCATAA
1 AAAGGTAACCCACTCACAAAGTCCATAGTTACTATTTCCCACTTCCATAA
32299796 NAAAGGTAACCCACTCACAAAGTCCATAGTTACTATTTCCCACTTCCATA
1 -AAAGGTAACCCACTCACAAAGTCCATAGTTACTATTTCCCACTTCCATA
32299846 GCGGAATTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.33, C:0.29, G:0.09, T:0.28
Consensus pattern (50 bp):
AAAGGTAACCCACTCACAAAGTCCATAGTTACTATTTCCCACTTCCATAA
Found at i:32300828 original size:74 final size:74
Alignment explanation
Indices: 32300707--32300854 Score: 251
Period size: 74 Copynumber: 2.0 Consensus size: 74
32300697 CAGACACCGG
32300707 TTGAATCAACACTGGCGCTTCGATCAATACCTTTTTCAACCAATCAAAAGCTTTTTGCTGTTTCT
1 TTGAATCAACACTGGCGCTTCGATCAATACCTTTTTCAACCAATCAAAAGCTTTTTGCTGTTTCT
*
32300772 CGGTCCAGA
66 CGATCCAGA
* * * *
32300781 TTGAATCAACACTGGCGCTTCGGTCAATTCTTTTTTCAACCGATCAAAAGCTTTTTGCTGTTTCT
1 TTGAATCAACACTGGCGCTTCGATCAATACCTTTTTCAACCAATCAAAAGCTTTTTGCTGTTTCT
32300846 CGATCCAGA
66 CGATCCAGA
32300855 CAAATGGTAC
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
74 69 1.00
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (74 bp):
TTGAATCAACACTGGCGCTTCGATCAATACCTTTTTCAACCAATCAAAAGCTTTTTGCTGTTTCT
CGATCCAGA
Found at i:32309668 original size:29 final size:29
Alignment explanation
Indices: 32309622--32309685 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
32309612 GTCTATTGGC
*
32309622 CGTGTATGGCACAAGGGCTAGCACATGGG
1 CGTGTGTGGCACAAGGGCTAGCACATGGG
* *
32309651 CGTGTGTGGCACACGGGCTGGCACATGGG
1 CGTGTGTGGCACAAGGGCTAGCACATGGG
32309680 CGTGTG
1 CGTGTG
32309686 GTCGGCAGTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.17, C:0.22, G:0.42, T:0.19
Consensus pattern (29 bp):
CGTGTGTGGCACAAGGGCTAGCACATGGG
Found at i:32311766 original size:16 final size:15
Alignment explanation
Indices: 32311741--32311770 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
32311731 GTACGTAAAA
32311741 CTCATATGTGATGAG
1 CTCATATGTGATGAG
32311756 CTCATTATGTGATGA
1 CTCA-TATGTGATGA
32311771 ACCCTCAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (15 bp):
CTCATATGTGATGAG
Found at i:32321154 original size:38 final size:38
Alignment explanation
Indices: 32321076--32321264 Score: 297
Period size: 38 Copynumber: 4.9 Consensus size: 38
32321066 AAACCCAAAC
* * *
32321076 ATAACACCAGCACGAAGCCTACGTGACTTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGA-TTTAACCCGGAT
32321115 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
32321153 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
* *
32321191 ATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
* * *
32321229 ATATTACCAGTACAAAGCCTGCGGGATTTAACCCGG
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
32321265 GTACAATCTC
Statistics
Matches: 144, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
38 121 0.84
39 23 0.16
ACGTcount: A:0.32, C:0.27, G:0.22, T:0.20
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:32325298 original size:31 final size:31
Alignment explanation
Indices: 32325258--32325319 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
32325248 GTTCATATAA
32325258 CATAGTACTTAACTTACCATTCATTCTAATT
1 CATAGTACTTAACTTACCATTCATTCTAATT
*
32325289 CATATTACTTAACTTACCATTCATTCTAATT
1 CATAGTACTTAACTTACCATTCATTCTAATT
32325320 TGAGGTAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.32, C:0.23, G:0.02, T:0.44
Consensus pattern (31 bp):
CATAGTACTTAACTTACCATTCATTCTAATT
Found at i:32326239 original size:51 final size:51
Alignment explanation
Indices: 32326177--32326281 Score: 201
Period size: 51 Copynumber: 2.1 Consensus size: 51
32326167 CGATTCCTCC
32326177 TTTATTCAAATGAGATTTAACATTTCTCAAGCATTAACAAGGATGTGATTA
1 TTTATTCAAATGAGATTTAACATTTCTCAAGCATTAACAAGGATGTGATTA
*
32326228 TTTATTTAAATGAGATTTAACATTTCTCAAGCATTAACAAGGATGTGATTA
1 TTTATTCAAATGAGATTTAACATTTCTCAAGCATTAACAAGGATGTGATTA
32326279 TTT
1 TTT
32326282 CTTACATCTA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.40
Consensus pattern (51 bp):
TTTATTCAAATGAGATTTAACATTTCTCAAGCATTAACAAGGATGTGATTA
Found at i:32336141 original size:27 final size:27
Alignment explanation
Indices: 32336100--32336218 Score: 139
Period size: 27 Copynumber: 4.4 Consensus size: 27
32336090 TGGATAAGTT
* *
32336100 GTAGAATTACTGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
32336127 ATAGAATTATCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
32336154 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
32336181 GTAGAATTACCGAGATACCCTTATGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
32336208 GTAAAATTACC
1 GTAGAATTACC
32336219 ATTTTGCCCC
Statistics
Matches: 77, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 77 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:32336889 original size:31 final size:32
Alignment explanation
Indices: 32336842--32336903 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 32
32336832 CTCGCTGCAA
* *
32336842 TCTGGTGGCTTCGCCAC-ATATATATATCTGT
1 TCTGGTGGCCTAGCCACGATATATATATCTGT
* *
32336873 TCTGGTGGCCTAGCCACGATATCTGTATCTG
1 TCTGGTGGCCTAGCCACGATATATATATCTG
32336904 GTGACTTCAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 15 0.58
32 11 0.42
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACGATATATATATCTGT
Found at i:32340417 original size:28 final size:28
Alignment explanation
Indices: 32340352--32340450 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
32340342 CATGAGATTG
* * *
32340352 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
32340381 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
32340409 GCACTAAGTGTGCGAGTTCGACTACTA-A
1 GCACTAAGTGTGCGAGTTAGATTA-TATA
32340437 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
32340451 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
28 44 0.70
29 19 0.30
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:32342046 original size:80 final size:80
Alignment explanation
Indices: 32341935--32342092 Score: 298
Period size: 80 Copynumber: 2.0 Consensus size: 80
32341925 AGAGCTATGG
* *
32341935 TTTAGTCGGTTCTATGACTACCATAGCACGTATGAGTCTAGCTATACATGCCTTAATGTTAATGT
1 TTTAGTCGGTTCTAGGACTACCATAGCACGTATCAGTCTAGCTATACATGCCTTAATGTTAATGT
32342000 TTAAATGTGTGATAA
66 TTAAATGTGTGATAA
32342015 TTTAGTCGGTTCTAGGACTACCATAGCACGTATCAGTCTAGCTATACATGCCTTAATGTTAATGT
1 TTTAGTCGGTTCTAGGACTACCATAGCACGTATCAGTCTAGCTATACATGCCTTAATGTTAATGT
32342080 TTAAATGTGTGAT
66 TTAAATGTGTGAT
32342093 GACTTCTGAC
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 76 1.00
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (80 bp):
TTTAGTCGGTTCTAGGACTACCATAGCACGTATCAGTCTAGCTATACATGCCTTAATGTTAATGT
TTAAATGTGTGATAA
Found at i:32348391 original size:29 final size:28
Alignment explanation
Indices: 32348349--32348421 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
32348339 CATGAGATTG
* * *
32348349 GCACTAGGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AAATTATATA
**
32348378 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAAATTATATA
32348406 GCACTAAGTGTGCGAG
1 GCACTAAGTGTGCGAG
32348422 CTCGACTATT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 23 0.59
29 16 0.41
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAAATTATATA
Found at i:32348412 original size:28 final size:28
Alignment explanation
Indices: 32348374--32348445 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 28
32348364 GTTCAAATTG
* * *
32348374 TATAGCACTAAGTGTGCGAGTTTGATTA
1 TATAGCACTAAGTGTGCGAGCTCGACTA
32348402 TATAGCACTAAGTGTGCGAGCTCGACTA
1 TATAGCACTAAGTGTGCGAGCTCGACTA
32348430 T-TAAGCACTAAGTGTG
1 TAT-AGCACTAAGTGTG
32348446 TGGGCTTATT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 1 0.03
28 39 0.98
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (28 bp):
TATAGCACTAAGTGTGCGAGCTCGACTA
Found at i:32357194 original size:46 final size:46
Alignment explanation
Indices: 32357127--32357252 Score: 216
Period size: 46 Copynumber: 2.7 Consensus size: 46
32357117 AACCCGCCCC
* * *
32357127 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
32357173 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
32357219 TAAGTGAACTCGGACTCAACTCCACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32357253 TGCTCAACCA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:32357271 original size:46 final size:45
Alignment explanation
Indices: 32357129--32357271 Score: 137
Period size: 46 Copynumber: 3.1 Consensus size: 45
32357119 CCCGCCCCTA
* ** * *
32357129 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
*** *
32357174 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
*
32357220 AAGTGAACTCGGACTCAACTCCACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCT
32357267 AGTGA
1 AGTGA
32357272 CATGTCACTT
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
46 81 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCT
Found at i:32361687 original size:16 final size:17
Alignment explanation
Indices: 32361666--32361697 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
32361656 AATTTGGCTG
32361666 AGAAAA-TTATTTAATT
1 AGAAAATTTATTTAATT
32361682 AGAAAATTTATTTAAT
1 AGAAAATTTATTTAAT
32361698 AAATAATGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
AGAAAATTTATTTAATT
Found at i:32367899 original size:71 final size:71
Alignment explanation
Indices: 32367815--32367957 Score: 277
Period size: 71 Copynumber: 2.0 Consensus size: 71
32367805 CTTGTGCTAC
32367815 TCGGTAAAAATACCTAATAGTCACAAGTATATGTTAGAGTAAGAATTTGATGTTGCCATAGAAGG
1 TCGGTAAAAATACCTAATAGTCACAAGTATATGTTAGAGTAAGAATTTGATGTTGCCATAGAAGG
32367880 GAAAAA
66 GAAAAA
*
32367886 TCGGTAAAAATACCTAATAGTCACAAGTGTATGTTAGAGTAAGAATTTGATGTTGCCATAGAAGG
1 TCGGTAAAAATACCTAATAGTCACAAGTATATGTTAGAGTAAGAATTTGATGTTGCCATAGAAGG
32367951 GAAAAA
66 GAAAAA
32367957 T
1 T
32367958 GATCAGCATG
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 71 1.00
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (71 bp):
TCGGTAAAAATACCTAATAGTCACAAGTATATGTTAGAGTAAGAATTTGATGTTGCCATAGAAGG
GAAAAA
Found at i:32380024 original size:34 final size:34
Alignment explanation
Indices: 32379981--32380050 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
32379971 TTGTGAGATT
*
32379981 GAGCCAGTATGCTCGGGAATGTGTATCAAATGAA
1 GAGCCAGTATGCTCGGGAATGTGTATCAAATAAA
*
32380015 GAGCCAGTATGCTCTGGAATGTGTATCAAATAAA
1 GAGCCAGTATGCTCGGGAATGTGTATCAAATAAA
32380049 GA
1 GA
32380051 ATAATGTGCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.24
Consensus pattern (34 bp):
GAGCCAGTATGCTCGGGAATGTGTATCAAATAAA
Found at i:32385339 original size:43 final size:43
Alignment explanation
Indices: 32385195--32385345 Score: 153
Period size: 43 Copynumber: 3.5 Consensus size: 43
32385185 GGTTACTGAA
* * *
32385195 ATGTGATTACATATAAGACCATGTCTAGAACATTGGCAT-TAT
1 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGAT
* * *
32385237 ATTGAGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTT
1 A-TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGAT
* * * * * *
32385281 AAT-CGATTTCGTGTAAGACCCTATCTAGGACAGTGGCATCGAT
1 -ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGAT
*
32385324 ATGTGATAACATGTAAGACCAT
1 ATGTGATTACATGTAAGACCAT
32385346 ATTTGGGATA
Statistics
Matches: 86, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
42 3 0.03
43 80 0.93
44 2 0.02
45 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGAT
Found at i:32392955 original size:43 final size:43
Alignment explanation
Indices: 32392858--32393028 Score: 134
Period size: 43 Copynumber: 4.0 Consensus size: 43
32392848 ACTGAGATGT
* * *
32392858 GATTACATGTAAGACCATGTCAGGGACATTGGCATTGTATTGA
1 GATTACCTGTAAGACCATGTCTGGGACATTGGCATTGTAATGA
* *
32392901 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTTAAT-C
1 GATTACCTGTAAGACCATGTCTGGGACATTGGCATTG-TAATGA
* * * * * ** *
32392944 GATTTCCTGTAAGACCCTATCTGGAACAGTGGCACCG-ATATGT
1 GATTACCTGTAAGACCATGTCTGGGACATTGGCATTGTA-ATGA
* * * * *
32392987 GATAACATGTAAGACCATATTTGGGATA-TGGCATTGT-ATGA
1 GATTACCTGTAAGACCATGTCTGGGACATTGGCATTGTAATGA
32393028 G
1 G
32393029 CCGTGGGTGG
Statistics
Matches: 101, Mismatches: 23, Indels: 10
0.75 0.17 0.07
Matches are distributed among these distances:
41 5 0.05
42 8 0.08
43 85 0.84
44 3 0.03
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (43 bp):
GATTACCTGTAAGACCATGTCTGGGACATTGGCATTGTAATGA
Found at i:32397439 original size:47 final size:49
Alignment explanation
Indices: 32397362--32397724 Score: 192
Period size: 46 Copynumber: 7.7 Consensus size: 49
32397352 AAGGTATAAT
* *
32397362 GTCGATGCCATGTCCCAGCCATGGTCTTACACTGGCTCATC-CATC-AA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCGAA
* * * *
32397409 GTCGATGCCATGTCCCAGACAAGGTATTACACTGACT-ATCGAAATCGAG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-AAATCGAA
* * * *
32397458 GCCGACGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACATATC--C
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCA-A-ATCGAA
* * * *
32397506 GTGCTGATGCCATGTCCCAGACATGGTCGTACACTGACACATC---TCGTA
1 GT-C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCGAA
* * * * ** *
32397554 GTTGATG-CATGTCCCTGACAT-GTCTTACATTGGCTTA-CATCTCGAG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCGAA
* * * * ***
32397600 GTTGATG-CATGTCCCAGACAT-GTCCTATACTAGCTC-TCGTCTC-AA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCGAA
* * * * **
32397645 TGCCAATGCCATGTCCCAGAAAGGGTCTTACAAC-GGCTC-TCATAAT-GTG
1 -GTCGATGCCATGTCCCAGACATGGTCTTAC-ACTGGCTCATCA-AATCGAA
*
32397694 GCCGATG-CATGTCCCAGACAT-GTCTTACACT
1 GTCGATGCCATGTCCCAGACATGGTCTTACACT
32397725 AGTGCACAAC
Statistics
Matches: 241, Mismatches: 53, Indels: 45
0.71 0.16 0.13
Matches are distributed among these distances:
43 1 0.00
44 11 0.05
45 16 0.07
46 58 0.24
47 57 0.24
48 24 0.10
49 39 0.16
50 33 0.14
51 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.26
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCGAA
Found at i:32397527 original size:50 final size:47
Alignment explanation
Indices: 32397364--32397541 Score: 159
Period size: 49 Copynumber: 3.7 Consensus size: 47
32397354 GGTATAATGT
* *
32397364 CGATGCCATGTCCCAGCCATGGTCTTACACTGGCTCATC-C-ATCAAGT-
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GCTC-TCACAATC-CGTG
* * * *
32397411 CGATGCCATGTCCCAGACAAGGTATTACACTGACTATCGA-AAT-CGAGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTG-CTCTC-ACAATCCG-TG
*
32397459 CCGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTG
1 -CGATGCCATGTCCCAGACATGGTCTTACACT-GCTCTCACA-ATCCGTG
*
32397509 CTGATGCCATGTCCCAGACATGGTCGTACACTG
1 C-GATGCCATGTCCCAGACATGGTCTTACACTG
32397542 ACACATCTCG
Statistics
Matches: 106, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
46 4 0.04
47 30 0.28
48 3 0.03
49 35 0.33
50 32 0.30
51 2 0.02
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGCTCTCACAATCCGTG
Found at i:32397542 original size:99 final size:96
Alignment explanation
Indices: 32397368--32397543 Score: 239
Period size: 96 Copynumber: 1.8 Consensus size: 96
32397358 TAATGTCGAT
* *
32397368 GCCATGTCCCAGCCATGGTCTTACACTGGCTCATCCATCAAGTCGATGCCATGTCCCAGACAAGG
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGTCGATGCCATGTCCCAGACAAGG
*
32397433 TATTACACTGACTATCGAAATCGAGGCCGAC
66 TAGTACACTGACTATCGAAATCGAGGCCGAC
*
32397464 GCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACAT-ATCCGTGCTGATGCCATGTCCCAGA
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCATC-CATCA--AGT-C-GATGCCATGTCCCAGA
* *
32397527 CATGGTCGTACACTGAC
61 CAAGGTAGTACACTGAC
32397544 ACATCTCGTA
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
95 3 0.04
96 33 0.48
97 2 0.03
98 1 0.01
99 30 0.43
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (96 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGTCGATGCCATGTCCCAGACAAGG
TAGTACACTGACTATCGAAATCGAGGCCGAC
Found at i:32403598 original size:30 final size:30
Alignment explanation
Indices: 32403564--32403629 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
32403554 GTTGTCCCAA
*
32403564 CCCTTTTCATAGCTCAACAGTTGAAGCTAT
1 CCCTTTTCATAGCTCAACAGCTGAAGCTAT
* *
32403594 CCCTTTTCATAGCTCAATAGCTGGAGCTAT
1 CCCTTTTCATAGCTCAACAGCTGAAGCTAT
32403624 CCCTTT
1 CCCTTT
32403630 CCATTATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.23, C:0.29, G:0.14, T:0.35
Consensus pattern (30 bp):
CCCTTTTCATAGCTCAACAGCTGAAGCTAT
Found at i:32403681 original size:29 final size:30
Alignment explanation
Indices: 32403622--32403682 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 30
32403612 AGCTGGAGCT
* * *
32403622 ATCCCTTTCCATTATTTTATGGTTGTAACC
1 ATCCCTTTCCATTAGTTGATGGTCGTAACC
* *
32403652 ATCCCTTTTCATT-GTTGATGGTCGTCACC
1 ATCCCTTTCCATTAGTTGATGGTCGTAACC
32403681 AT
1 AT
32403683 TGTGATAACC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 14 0.54
30 12 0.46
ACGTcount: A:0.18, C:0.25, G:0.13, T:0.44
Consensus pattern (30 bp):
ATCCCTTTCCATTAGTTGATGGTCGTAACC
Found at i:32405011 original size:46 final size:46
Alignment explanation
Indices: 32404958--32405080 Score: 192
Period size: 46 Copynumber: 2.7 Consensus size: 46
32404948 ACCATCCGAC
*
32404958 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAA
* * *
32405004 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAA
* *
32405050 CTCGTTGAGTTGAGTACGAGTTCGCTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32405081 GTGGGTTACA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAA
Found at i:32406423 original size:30 final size:30
Alignment explanation
Indices: 32406385--32406460 Score: 109
Period size: 30 Copynumber: 2.6 Consensus size: 30
32406375 GGGACATTAC
*
32406385 AACC-ATCCCTTTTCATAATTTGATAGCCG
1 AACCTATCCCTTTTCATAATTTGAGAGCCG
* *
32406414 AACCTATCCCTTTTCACAATTTGAGAGTCG
1 AACCTATCCCTTTTCATAATTTGAGAGCCG
*
32406444 AAGCTATCCCTTTTCAT
1 AACCTATCCCTTTTCAT
32406461 TGTTGAATAG
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
29 4 0.10
30 37 0.90
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.36
Consensus pattern (30 bp):
AACCTATCCCTTTTCATAATTTGAGAGCCG
Found at i:32408131 original size:42 final size:42
Alignment explanation
Indices: 32408015--32408141 Score: 159
Period size: 41 Copynumber: 3.1 Consensus size: 42
32408005 TAGAGCCTAG
* * *
32408015 TATAATACACCGGCA-CAGAGCTTGCTAAGCAATAAACCTGA
1 TATAATACACCGGCATCAAAGCCTGCTAAGCAATAAGCCTGA
* * *
32408056 TTTAATACACCAGCAT-AAAGCCTGCTATGCAATAAGCCTGA
1 TATAATACACCGGCATCAAAGCCTGCTAAGCAATAAGCCTGA
* * *
32408097 TATCATACACTGGCATCAAAGCCTGCTAGGCAATAAGCCTGA
1 TATAATACACCGGCATCAAAGCCTGCTAAGCAATAAGCCTGA
32408139 TAT
1 TAT
32408142 TATATCACTG
Statistics
Matches: 73, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
41 46 0.63
42 27 0.37
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (42 bp):
TATAATACACCGGCATCAAAGCCTGCTAAGCAATAAGCCTGA
Found at i:32409396 original size:31 final size:30
Alignment explanation
Indices: 32409358--32409433 Score: 93
Period size: 31 Copynumber: 2.4 Consensus size: 30
32409348 TACGGTTACC
32409358 ATCCCTTTT-TTATAATTTGATAGCC-AAGGCT
1 ATCCCTTTTATTAT--TTTGATAGCCGAA-GCT
32409389 ATCCCTTTTCATTATTTTGATAGCCGAAGCT
1 ATCCCTTTT-ATTATTTTGATAGCCGAAGCT
32409420 ATCCCTTTTCATTA
1 ATCCCTTTT-ATTA
32409434 GCCGATAATC
Statistics
Matches: 42, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
31 36 0.86
32 2 0.05
33 4 0.10
ACGTcount: A:0.24, C:0.22, G:0.11, T:0.43
Consensus pattern (30 bp):
ATCCCTTTTATTATTTTGATAGCCGAAGCT
Found at i:32411148 original size:20 final size:20
Alignment explanation
Indices: 32411120--32411158 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
32411110 CAACATACAT
* *
32411120 TTCACATACAATTTAATCAA
1 TTCAAATACAATTCAATCAA
32411140 TTCAAATACAATTCAATCA
1 TTCAAATACAATTCAATCA
32411159 CAACCAATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
TTCAAATACAATTCAATCAA
Found at i:32412676 original size:39 final size:40
Alignment explanation
Indices: 32412620--32412700 Score: 146
Period size: 39 Copynumber: 2.0 Consensus size: 40
32412610 AGCATCATAT
32412620 ATATATACGTATACACTTTCATTGTAAACCAAACCATAATG
1 ATATATAC-TATACACTTTCATTGTAAACCAAACCATAATG
32412661 ATATATA-TATACACTTTCATTGTAAACCAAACCATAATG
1 ATATATACTATACACTTTCATTGTAAACCAAACCATAATG
32412700 A
1 A
32412701 CAAGCGTATT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
39 33 0.82
41 7 0.17
ACGTcount: A:0.43, C:0.19, G:0.06, T:0.32
Consensus pattern (40 bp):
ATATATACTATACACTTTCATTGTAAACCAAACCATAATG
Found at i:32414113 original size:41 final size:41
Alignment explanation
Indices: 32414050--32414127 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 41
32414040 TCTGATATTT
* *
32414050 ATTCACCGGCACTAAGCCTGCTAGGCACAAAGCCCGATCAA
1 ATTCACCAGCACAAAGCCTGCTAGGCACAAAGCCCGATCAA
* *
32414091 ATTCACCAGCACAAAGCTTGCTAGGCTCAAAGCCCGA
1 ATTCACCAGCACAAAGCCTGCTAGGCACAAAGCCCGA
32414128 ATATCACAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.32, C:0.33, G:0.19, T:0.15
Consensus pattern (41 bp):
ATTCACCAGCACAAAGCCTGCTAGGCACAAAGCCCGATCAA
Found at i:32415673 original size:27 final size:27
Alignment explanation
Indices: 32415640--32416079 Score: 248
Period size: 27 Copynumber: 16.3 Consensus size: 27
32415630 CCTCAAATTG
*
32415640 TAAAATTACCAAAGTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* ****
32415667 TAGAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * ****
32415694 CAGAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * * **** *
32415721 CAGAATTATCGTTTTACCCTCAATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * *** * *
32415748 TAGAATTACTATTTTACCATTGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* *****
32415775 TAGAATTACTGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * *
32415802 CAAAATTACTAAAATACCCT-TAGTTTA
1 TAAAATTACCAAAATACCCTCGA-TTTA
* *
32415829 CAAAATTACCAAAATACCCTCGA-TCA
1 TAAAATTACCAAAATACCCTCGATTTA
* *
32415855 GTAAAATTACCAAAATACCCTAG-TTTG
1 -TAAAATTACCAAAATACCCTCGATTTA
* * * *
32415882 TAAAATTGCTAAAATACCC-CTGGTTTG
1 TAAAATTACCAAAATACCCTC-GATTTA
* * *
32415909 TAAAATTACCGAAATACCCTCAATTTG
1 TAAAATTACCAAAATACCCTCGATTTA
* *
32415936 TAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACCAAAATACCCTCGA-TTTA
* *
32415963 TAAAATTACCAAAATACCACT-GGTTTG
1 TAAAATTACCAAAATACC-CTCGATTTA
* *
32415990 TGAAATTACCAAAATACCCTCAATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
*
32416017 TAAAATTACCAAAATACCC-CTGGTTTA
1 TAAAATTACCAAAATACCCTC-GATTTA
* *
32416044 TAAAGTTA-CAGAAATACCCTCGACTTTC
1 TAAAATTACCA-AAATACCCTCGA-TTTA
32416072 TAAAATTA
1 TAAAATTA
32416080 TGGAAATACC
Statistics
Matches: 343, Mismatches: 55, Indels: 29
0.80 0.13 0.07
Matches are distributed among these distances:
26 28 0.08
27 301 0.88
28 14 0.04
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.33
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCGATTTA
Done.