Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56482370
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1659275 characters in sequence are not A, C, G, or T
File 97 of 172
Found at i:32713807 original size:59 final size:59
Alignment explanation
Indices: 32713725--32713854 Score: 215
Period size: 59 Copynumber: 2.2 Consensus size: 59
32713715 TATAAATTTA
* * * *
32713725 GCCACTAATATTTGTATATTTTGTTAAAATAGTGTTAATTGTATTTTTTAATTTTTTTT
1 GCCATTAATTTTTGTATATTTTGTTAAAATAGTGTTAATTGTATTTTTAAATTTTTGTT
*
32713784 GCCATTAATTTTTGTATGTTTTGTTAAAATAGTGTTAATTGTATTTTTAAATTTTTGTT
1 GCCATTAATTTTTGTATATTTTGTTAAAATAGTGTTAATTGTATTTTTAAATTTTTGTT
32713843 GCCATTAATTTT
1 GCCATTAATTTT
32713855 GTTTCTTTTT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 66 1.00
ACGTcount: A:0.26, C:0.05, G:0.12, T:0.57
Consensus pattern (59 bp):
GCCATTAATTTTTGTATATTTTGTTAAAATAGTGTTAATTGTATTTTTAAATTTTTGTT
Found at i:32714985 original size:16 final size:16
Alignment explanation
Indices: 32714966--32714996 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32714956 CTTCTTCACT
32714966 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
32714982 TACTTACTTACTTAA
1 TACTCACTTACTTAA
32714997 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:32715002 original size:20 final size:20
Alignment explanation
Indices: 32714963--32715002 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
32714953 AAACTTCTTC
* *
32714963 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
32714983 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
32715003 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:32715371 original size:55 final size:54
Alignment explanation
Indices: 32715233--32715379 Score: 152
Period size: 53 Copynumber: 2.7 Consensus size: 54
32715223 GGTCTCCTTT
* * * * * * *
32715233 TGAAACTTACCATTGTCATGTCTCGACATGGTCTTACATGGTATCATTGCCTTA
1 TGAAACTTACCAATGCCATGTCTTGACATGGTCTTACATAGAACCATTGCATTA
* * * * * *
32715287 TG-AACTCACCAATACCATGCCTTGGCATGGTCTTCCATAGAACCTTTGCATTA
1 TGAAACTTACCAATGCCATGTCTTGACATGGTCTTACATAGAACCATTGCATTA
*
32715340 TAGAAACTTATCAATGCCATGTCTTGACATGGTCTTACAT
1 T-GAAACTTACCAATGCCATGTCTTGACATGGTCTTACAT
32715380 GATATCCTTA
Statistics
Matches: 72, Mismatches: 19, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
53 39 0.54
54 3 0.04
55 30 0.42
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.34
Consensus pattern (54 bp):
TGAAACTTACCAATGCCATGTCTTGACATGGTCTTACATAGAACCATTGCATTA
Found at i:32715380 original size:108 final size:110
Alignment explanation
Indices: 32715234--32715430 Score: 274
Period size: 108 Copynumber: 1.8 Consensus size: 110
32715224 GTCTCCTTTT
* * * *
32715234 GAAACTTACCATTGTCATGTCTCGACATGGTCTTACATGGTATCATTGCCTTATG-AA-CTCACC
1 GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCATTACCTTA-GAAACCTCACC
32715297 AA-TACCATGCCTTGGCATGGTCTTCCATAGAACCTTTGCATTATA
65 AATTACCATGCCTTGGCATGGTCTTCCATAGAACCTTTGCATTATA
* * * * *
32715342 GAAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTACCTTAGAAACCTTACTA
1 GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCATTACCTTAGAAACCTCACCA
*
32715407 ATTTCCATGCCTTGGCATGGTCTT
66 ATTACCATGCCTTGGCATGGTCTT
32715431 ACATGGTATC
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.63
109 6 0.08
110 21 0.28
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (110 bp):
GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCATTACCTTAGAAACCTCACCA
ATTACCATGCCTTGGCATGGTCTTCCATAGAACCTTTGCATTATA
Found at i:32718577 original size:17 final size:18
Alignment explanation
Indices: 32718540--32718575 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
32718530 GTAAGTGTAC
*
32718540 ATTGTCATTGCATTTTTTT
1 ATTGTCATTACA-TTTTTT
32718559 ATTGTCATTACATTTTT
1 ATTGTCATTACATTTTT
32718576 ATGTTAGTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.19, C:0.11, G:0.08, T:0.61
Consensus pattern (18 bp):
ATTGTCATTACATTTTTT
Found at i:32724140 original size:56 final size:56
Alignment explanation
Indices: 32724054--32724229 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
32724044 ACAAGGGATG
32724054 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
32724110 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
32724166 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
32724222 ATGGGCAA
1 ATGGGCAA
32724230 TAAACTAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:32733146 original size:79 final size:81
Alignment explanation
Indices: 32733010--32733194 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
32733000 TTGAATGATG
*
32733010 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
32733074 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
32733089 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
32733151 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
32733169 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32733195 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:32733208 original size:40 final size:40
Alignment explanation
Indices: 32733011--32733194 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
32733001 TGAATGATGT
* * * *
32733011 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
32733051 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
32733091 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32733129 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32733170 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
32733195 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:32733216 original size:79 final size:79
Alignment explanation
Indices: 32733063--32733227 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
32733053 GGACTAAGAT
* **
32733063 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
32733128 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
32733142 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
32733205 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
32733221 CCGAAGG
1 CCGAAGG
32733228 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:32742364 original size:59 final size:59
Alignment explanation
Indices: 32742293--32742410 Score: 236
Period size: 59 Copynumber: 2.0 Consensus size: 59
32742283 TTTTGAAATA
32742293 TTAATTAGGAGGTCTTAAATAGCAATTTTACCAATTTCTAAGTCTATGGACAAAAATTG
1 TTAATTAGGAGGTCTTAAATAGCAATTTTACCAATTTCTAAGTCTATGGACAAAAATTG
32742352 TTAATTAGGAGGTCTTAAATAGCAATTTTACCAATTTCTAAGTCTATGGACAAAAATTG
1 TTAATTAGGAGGTCTTAAATAGCAATTTTACCAATTTCTAAGTCTATGGACAAAAATTG
32742411 GACATGGATG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (59 bp):
TTAATTAGGAGGTCTTAAATAGCAATTTTACCAATTTCTAAGTCTATGGACAAAAATTG
Found at i:32745087 original size:40 final size:39
Alignment explanation
Indices: 32745028--32745159 Score: 149
Period size: 40 Copynumber: 3.3 Consensus size: 39
32745018 CATTTGAATG
* *
32745028 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTG-TT
* * *
32745068 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGTT
* * * *
32745108 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGT-GTT
32745148 ATATCC-GGCTAA
1 ATATCCGGGCTAA
32745160 ATTCCGAAGA
Statistics
Matches: 76, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
39 6 0.08
40 68 0.89
41 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGTT
Found at i:32750094 original size:38 final size:38
Alignment explanation
Indices: 32750017--32750095 Score: 95
Period size: 38 Copynumber: 2.1 Consensus size: 38
32750007 GTCTGAACAA
* * * *
32750017 AAACATGTATTAAAGGCGTCTTAAACTAGGACATATTT
1 AAACATATATTAAAGACGTCCTAAACTAGGAAATATTT
* * *
32750055 AAACATATATTGAAGACGTCCTAAACTATGAAATCTTT
1 AAACATATATTAAAGACGTCCTAAACTAGGAAATATTT
32750093 AAA
1 AAA
32750096 AACCCTTGTT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.43, C:0.14, G:0.13, T:0.30
Consensus pattern (38 bp):
AAACATATATTAAAGACGTCCTAAACTAGGAAATATTT
Found at i:32752574 original size:40 final size:40
Alignment explanation
Indices: 32752499--32752707 Score: 251
Period size: 41 Copynumber: 5.1 Consensus size: 40
32752489 GCAAAAATTG
* ** * *
32752499 TAAAACACAGAGCAATAGCGGCG-TTTTACCAAAAACACTGC
1 TAAAA-ACAGAGCATTAGCGGCGCTTTT-GGAAAAACGCCGC
* * * *
32752540 TAAAAACAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGT
1 TAAAAACAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGC
32752580 TAAAAAACAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGC
1 T-AAAAACAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGC
*
32752621 TAAAAACCAGAACATTAGCGGCGCTTTT-GATAAAACGCCGC
1 TAAAAA-CAGAGCATTAGCGGCGCTTTTGGA-AAAACGCCGC
*
32752662 TAAAAACCAGAACATTAGCGGCGCTTTTGGAAAAACGCCGC
1 TAAAAA-CAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGC
32752703 TAAAA
1 TAAAA
32752708 GTCATATAAC
Statistics
Matches: 152, Mismatches: 11, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
40 32 0.21
41 118 0.78
42 2 0.01
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (40 bp):
TAAAAACAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGC
Found at i:32752886 original size:14 final size:14
Alignment explanation
Indices: 32752864--32752957 Score: 52
Period size: 14 Copynumber: 6.7 Consensus size: 14
32752854 TTAATTATCA
*
32752864 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
32752878 TTATGGTTTAAGATGGT
1 TTATGGTTT-A-A-GGT
* *
32752895 ATAGGGTTTAAGGT
1 TTATGGTTTAAGGT
32752909 TTATGAG-TTAA---
1 TTATG-GTTTAAGGT
* *
32752920 CTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* *
32752934 ATATGGTTTAGGGT
1 TTATGGTTTAAGGT
*
32752948 TTAAGGTTTA
1 TTATGGTTTA
32752958 TGAGTTAACT
Statistics
Matches: 61, Mismatches: 11, Indels: 16
0.69 0.12 0.18
Matches are distributed among these distances:
10 1 0.02
11 8 0.13
14 37 0.61
15 3 0.05
16 2 0.03
17 10 0.16
ACGTcount: A:0.28, C:0.01, G:0.27, T:0.45
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:32753064 original size:21 final size:21
Alignment explanation
Indices: 32753040--32753083 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
32753030 GGGTTGGAAT
* *
32753040 TTAAGGCGTAAGGGTTTGGTG
1 TTAAGGAGTAAGGGTTTAGTG
*
32753061 TTAAGGATTAAGGGTTTAGTG
1 TTAAGGAGTAAGGGTTTAGTG
32753082 TT
1 TT
32753084 TAGTGTTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.23, C:0.02, G:0.36, T:0.39
Consensus pattern (21 bp):
TTAAGGAGTAAGGGTTTAGTG
Found at i:32758910 original size:10 final size:10
Alignment explanation
Indices: 32758895--32758925 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
32758885 TTCTTACTAT
32758895 TCATACTGAA
1 TCATACTGAA
32758905 TCATACTGAA
1 TCATACTGAA
32758915 TCATACTGAA
1 TCATACTGAA
32758925 T
1 T
32758926 ATTTTCATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (10 bp):
TCATACTGAA
Found at i:32759661 original size:15 final size:15
Alignment explanation
Indices: 32759641--32759669 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
32759631 TTACAAGTGA
32759641 TTGTTGTTAAGATAC
1 TTGTTGTTAAGATAC
32759656 TTGTTGTTAAGATA
1 TTGTTGTTAAGATA
32759670 TTAAACCCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.03, G:0.21, T:0.48
Consensus pattern (15 bp):
TTGTTGTTAAGATAC
Found at i:32760432 original size:15 final size:15
Alignment explanation
Indices: 32760401--32760445 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
32760391 CATAGAAAAT
32760401 AAATAT-TATTTAATTA
1 AAATATATATTT--TTA
32760417 AAATATATATTTTTA
1 AAATATATATTTTTA
*
32760432 AAATTTATATTTTT
1 AAATATATATTTTT
32760446 TAGCGGCGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 16 0.59
16 6 0.22
17 5 0.19
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
AAATATATATTTTTA
Found at i:32766622 original size:50 final size:50
Alignment explanation
Indices: 32766374--32766623 Score: 213
Period size: 50 Copynumber: 5.0 Consensus size: 50
32766364 GTAACCGAAG
* * * * * *
32766374 CTATCTGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGGCC-AA
1 CTATCTAGTACACGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAA
* * * *
32766423 CAATCTGGTACACGTAGTAGCTTGCACTTATTACTATACACGTGACCTAA
1 CTATCTAGTACACGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAA
* * * *
32766473 CCATAT-GATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAA
1 CTATCTAG-TACACGTAGTAGCTTGCACTTAGTACTACACACGTGACCT-AA
* * * * * * **
32766523 GT-TGTCAGGTACGCATAATAG-TCTGCACTTAGTACTACACATGCAACCTAA
1 CTATCT-A-GTACACGTAGTAGCT-TGCACTTAGTACTACACACGTGACCTAA
*
32766574 CTATCTAGTACACGTAGTAGCTTGCACTTATTACTACACACGTGACCTAA
1 CTATCTAGTACACGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAA
32766624 AACCATCTTA
Statistics
Matches: 157, Mismatches: 34, Indels: 19
0.75 0.16 0.09
Matches are distributed among these distances:
49 43 0.27
50 76 0.48
51 34 0.22
52 4 0.03
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (50 bp):
CTATCTAGTACACGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAA
Found at i:32771047 original size:20 final size:20
Alignment explanation
Indices: 32771010--32771048 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
32771000 CCTGCAGTCC
* *
32771010 AAAATTTTCAACTTTTTCTT
1 AAAATTTTCAAATGTTTCTT
32771030 AAAATTTTCAAATGTTTCT
1 AAAATTTTCAAATGTTTCT
32771049 GATTTAGTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.13, G:0.03, T:0.51
Consensus pattern (20 bp):
AAAATTTTCAAATGTTTCTT
Found at i:32779944 original size:56 final size:56
Alignment explanation
Indices: 32779858--32780033 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
32779848 ACAAGGGATG
32779858 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
32779914 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
32779970 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
32780026 ATGGGCAA
1 ATGGGCAA
32780034 TAAACTAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:32780068 original size:112 final size:112
Alignment explanation
Indices: 32779858--32780068 Score: 259
Period size: 112 Copynumber: 1.9 Consensus size: 112
32779848 ACAAGGGATG
32779858 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAA
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAA
* * * ** ** ***
32779923 ACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
66 ACATCTAATGAAAAATGAAGTGAGAAAACAAAAATAAAATAAGAAGC
*
32779970 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATGGGCAAT
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAA-
32780035 AA-A-CTAAT-AAGAAATGGAAG-GAAGAAAACAAAAA
65 AACATCTAATGAA-AAAT-GAAGTG-AGAAAACAAAAA
32780069 AAANNNNNNN
Statistics
Matches: 84, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
110 2 0.02
111 7 0.08
112 73 0.87
113 2 0.02
ACGTcount: A:0.49, C:0.09, G:0.22, T:0.21
Consensus pattern (112 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAA
ACATCTAATGAAAAATGAAGTGAGAAAACAAAAATAAAATAAGAAGC
Found at i:32782611 original size:40 final size:41
Alignment explanation
Indices: 32782550--32782701 Score: 202
Period size: 40 Copynumber: 3.8 Consensus size: 41
32782540 CATTTGAATG
* * * *
32782550 ATATCCGGGCTAAGTCTCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
32782590 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
32782630 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
32782670 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
32782702 TTGTGGTTAT
Statistics
Matches: 101, Mismatches: 9, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
40 98 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:32782713 original size:80 final size:80
Alignment explanation
Indices: 32782550--32782721 Score: 204
Period size: 80 Copynumber: 2.2 Consensus size: 80
32782540 CATTTGAATG
* * * * * *
32782550 ATATCCGGGCTAAGTCTCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
* *
32782615 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTGGAT
* *
32782630 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGC
** *
32782694 AATTGTGCTTGTGGTT
65 AATTGTGCGAGTGGAT
32782710 ATATCC-GGCTAA
1 ATATCCGGGCTAA
32782722 ATTCCGAAGA
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 6 0.08
80 70 0.90
81 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
ATTGTGCGAGTGGAT
Found at i:32784142 original size:15 final size:15
Alignment explanation
Indices: 32784110--32784151 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
32784100 GTTACATCAC
*
32784110 CAAAATATAGAATTT
1 CAAAATATAAAATTT
32784125 CAAAA-ATAAAATTAT
1 CAAAATATAAAATT-T
*
32784140 CAATATATAAAA
1 CAAAATATAAAA
32784152 CAAGACCATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 7 0.30
15 10 0.43
16 6 0.26
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.29
Consensus pattern (15 bp):
CAAAATATAAAATTT
Found at i:32788020 original size:31 final size:31
Alignment explanation
Indices: 32787985--32788043 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
32787975 TATTCTAGTC
32787985 AAATTAAATTTTGTAAACAATTTATATATTG
1 AAATTAAATTTTGTAAACAATTTATATATTG
*
32788016 AAATTAAATTTTGTAAATAATTTATATA
1 AAATTAAATTTTGTAAACAATTTATATA
32788044 AAATTTTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.46
Consensus pattern (31 bp):
AAATTAAATTTTGTAAACAATTTATATATTG
Found at i:32790102 original size:40 final size:40
Alignment explanation
Indices: 32790039--32790118 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
32790029 ACTCCCCTGA
*
32790039 AGGTTCCTCTTTCCACACTTGAAAGTCTGCATGTTCTATC
1 AGGTTCCTCTTTCCACACCTGAAAGTCTGCATGTTCTATC
*
32790079 AGGTTCCTCTTTCTACACCTGAAAGTCTGCATGTTCTATC
1 AGGTTCCTCTTTCCACACCTGAAAGTCTGCATGTTCTATC
32790119 TCTGCTAAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.20, C:0.28, G:0.15, T:0.38
Consensus pattern (40 bp):
AGGTTCCTCTTTCCACACCTGAAAGTCTGCATGTTCTATC
Found at i:32794422 original size:27 final size:28
Alignment explanation
Indices: 32794338--32794431 Score: 118
Period size: 28 Copynumber: 3.4 Consensus size: 28
32794328 CACGAGATTG
* * * * *
32794338 GCACTAAGTGTGTGGGTTTCAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
32794367 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
32794395 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
32794422 GCACTGAGTG
1 GCACTAAGTG
32794432 CGGACTTAAT
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 20 0.34
28 22 0.37
29 17 0.29
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:32794446 original size:27 final size:27
Alignment explanation
Indices: 32794366--32794447 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
32794356 TCAATTGTAC
* * *
32794366 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGCGCGA-CTTAATTATAT
* * *
32794394 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGCGCGACTTAATTATAT
*
32794421 AGCACTGAGTGCG-GACTTAATATATAT
1 AGCACTAAGTGCGCGACTTAAT-TATAT
32794448 TTTTGAATCG
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 6 0.12
27 26 0.54
28 16 0.33
ACGTcount: A:0.30, C:0.12, G:0.24, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGCGCGACTTAATTATAT
Found at i:32801983 original size:12 final size:12
Alignment explanation
Indices: 32801966--32801991 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32801956 CATTCCGAAG
32801966 TATATATATACA
1 TATATATATACA
32801978 TATATATATACA
1 TATATATATACA
32801990 TA
1 TA
32801992 AGTATGCCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:32802518 original size:27 final size:28
Alignment explanation
Indices: 32802434--32802531 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
32802424 CACGAGATTG
* * *
32802434 GCACTAAGTGTGC-AGGTTTAAATTGTACA
1 GCACTAAGTGTGCGA-GTTT-GATTATATA
32802463 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
32802491 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
32802518 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
32802532 GACTTAATAT
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 17 0.27
30 1 0.02
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:32802542 original size:27 final size:27
Alignment explanation
Indices: 32802462--32802544 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
32802452 TAAATTGTAC
* *
32802462 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
32802490 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
32802517 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
32802544 A
1 A
32802545 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:32802545 original size:29 final size:27
Alignment explanation
Indices: 32802434--32802545 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
32802424 CACGAGATTG
** * *
32802434 GCACTAAGTGTGCAGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
32802463 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
32802491 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
32802518 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
32802546 TTTTGAATCG
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:32805062 original size:18 final size:18
Alignment explanation
Indices: 32805029--32805064 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
32805019 ATACAATACT
* *
32805029 AAAAAAGAAGAGGAAAAA
1 AAAAAAGAAAAAGAAAAA
32805047 AAAAAAGAAAAAGAAAAA
1 AAAAAAGAAAAAGAAAAA
32805065 TATTGCAAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (18 bp):
AAAAAAGAAAAAGAAAAA
Found at i:32808601 original size:17 final size:18
Alignment explanation
Indices: 32808579--32808612 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32808569 AAACATTATT
32808579 TAATTTT-TTTCAAAATA
1 TAATTTTATTTCAAAATA
*
32808596 TAATTTTATTTTAAAAT
1 TAATTTTATTTCAAAAT
32808613 TTTGTTAGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
TAATTTTATTTCAAAATA
Found at i:32810060 original size:47 final size:46
Alignment explanation
Indices: 32809950--32810070 Score: 133
Period size: 47 Copynumber: 2.6 Consensus size: 46
32809940 GTTATTGTGA
*
32809950 GCTAGTGTAAGACATGTCTGGAACAT-GCATCGGCCACATTATGAGAG
1 GCTAGTGTAAGACATGTCTGGAACATGGCACCGG-C-CATTATGAGAG
* *
32809997 CCT-GTGTAAGACCATGTCTGGGACATGGCACCGG-CATTGA-GACGAG
1 GCTAGTGTAAGA-CATGTCTGGAACATGGCACCGGCCATT-ATGA-GAG
32810043 TGCTAGTGTAAGACATGTCTGGAACATG
1 -GCTAGTGTAAGACATGTCTGGAACATG
32810071 CATCGGTCGC
Statistics
Matches: 63, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
45 6 0.10
46 12 0.19
47 31 0.49
48 14 0.22
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGAACATGGCACCGGCCATTATGAGAG
Found at i:32811011 original size:3 final size:3
Alignment explanation
Indices: 32811003--32811028 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
32810993 CCATGTGTGA
32811003 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
32811029 ATTAAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:32813243 original size:39 final size:39
Alignment explanation
Indices: 32813198--32813357 Score: 239
Period size: 39 Copynumber: 4.1 Consensus size: 39
32813188 ATTCAAGACA
* *
32813198 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCAGGCTAAAGTCCCGCAGGCTTCGTG
* * *
32813237 CTGGAAATGTATCTAGGCTAAAGTTCCGTAGGCTTCGTG
1 CTGGAAATGTATCCAGGCTAAAGTCCCGCAGGCTTCGTG
* *
32813276 CTGGAAATGTATCCGGGCTAAAGTTCCGCAGGCTTCGTG
1 CTGGAAATGTATCCAGGCTAAAGTCCCGCAGGCTTCGTG
* *
32813315 TTGGAAATGTATCCAGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCAGGCTAAAGTCCCGCAGGCTTCGTG
32813354 CTGG
1 CTGG
32813358 TAATATAATT
Statistics
Matches: 110, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 110 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (39 bp):
CTGGAAATGTATCCAGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:32824979 original size:46 final size:45
Alignment explanation
Indices: 32824926--32825098 Score: 162
Period size: 46 Copynumber: 3.7 Consensus size: 45
32824916 GGGTTATTGT
*
32824926 GAGCTAGTGTAAGACATGTATGGGACATGCATCACCCACATT-ATGA-
1 GAGCTAGTGTAAGACATGTCTGGGACATGCAT--CCCACATTGA-GAC
*
32824972 GAGCTAGTGTAAGACCATGTCTGGGACATGGCAT-CGACATTGAGAC
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCCCACATTGAGAC
*
32825018 GAGTGCTAGTGTAAGGCATGTCTGGGACATGCATCGGCC-C--TGAGAC
1 GA--GCTAGTGTAAGACATGTCTGGGACATGCATC--CCACATTGAGAC
32825064 GCAAG-TCAGTGTAAGACATGTCTGGGACATGCATC
1 G--AGCT-AGTGTAAGACATGTCTGGGACATGCATC
32825099 GGCTATGAGA
Statistics
Matches: 110, Mismatches: 5, Indels: 24
0.79 0.04 0.17
Matches are distributed among these distances:
45 9 0.08
46 56 0.51
47 27 0.25
48 17 0.15
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCCCACATTGAGAC
Found at i:32825099 original size:46 final size:46
Alignment explanation
Indices: 32824977--32825145 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
32824967 TATGAGAGCT
* * *
32824977 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGTGC
1 AGTGTAAGACCATGTCTGGGACATAGCATCGGCAATGAGACGAGT-C
* **
32825024 TAGTGTAAG-GCATGTCTGGGACAT-GCATCGGCCCTGAGACGCAAGTC
1 -AGTGTAAGACCATGTCTGGGACATAGCATCGGCAATGAGACG--AGTC
* * *
32825071 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTATGAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATAGCATCGGCAATGAGACGAGTC
*
32825115 AATGTAAGACCATGTCTGGGACATAGCATCG
1 AGTGTAAGACCATGTCTGGGACATAGCATCG
32825146 ACATAGATAT
Statistics
Matches: 107, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
44 11 0.10
45 14 0.13
46 56 0.52
47 15 0.14
48 11 0.10
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATAGCATCGGCAATGAGACGAGTC
Found at i:32829361 original size:40 final size:40
Alignment explanation
Indices: 32829149--32829354 Score: 333
Period size: 40 Copynumber: 5.2 Consensus size: 40
32829139 AACCCAAGTA
* * *
32829149 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
32829188 TCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAGATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
32829228 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
32829268 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
32829308 CCTTCGGGACTTAGCCCGAATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
32829348 CCTTCGG
1 CCTTCGG
32829355 ATCTTAGTCC
Statistics
Matches: 155, Mismatches: 11, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
39 12 0.08
40 143 0.92
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:32830751 original size:13 final size:13
Alignment explanation
Indices: 32830733--32830758 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32830723 ATTTTTATTT
32830733 TTAACATAAAATA
1 TTAACATAAAATA
32830746 TTAACATAAAATA
1 TTAACATAAAATA
32830759 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:32835229 original size:40 final size:40
Alignment explanation
Indices: 32835185--32835336 Score: 207
Period size: 40 Copynumber: 3.8 Consensus size: 40
32835175 GGGTATAGCT
* * * *
32835185 ACTCGCTCGAATGCCTTTGGGACATAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
*
32835225 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* *
32835265 ACTCGCACAAATGCCTTCGGGACTTAGCCTGGA-ACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA
* *
32835305 ACTAGCGCAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
32835337 TTATCATCCA
Statistics
Matches: 101, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 100 0.99
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:32837381 original size:145 final size:145
Alignment explanation
Indices: 32837184--32837459 Score: 552
Period size: 145 Copynumber: 1.9 Consensus size: 145
32837174 AACTCAAGGT
32837184 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
32837249 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
32837314 ATTTCAAGTTCGCAC
131 ATTTCAAGTTCGCAC
32837329 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
32837394 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
32837459 A
131 A
32837460 CTTTAAACTC
Statistics
Matches: 131, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
145 131 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (145 bp):
ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
ATTTCAAGTTCGCAC
Found at i:32837503 original size:29 final size:29
Alignment explanation
Indices: 32837440--32837507 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
32837430 TAATCAACCG
32837440 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
32837469 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
32837498 CGCACACTTA
1 CGCACACTTA
32837508 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:32837587 original size:174 final size:174
Alignment explanation
Indices: 32837297--32837656 Score: 675
Period size: 174 Copynumber: 2.1 Consensus size: 174
32837287 ATCAACCGCG
*
32837297 CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATTGACTCGG
1 CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
*
32837362 TAAAGTCGCACCCTTCATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
66 TAAAGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
*
32837427 TAATAATCAACCGCGCACACTTAGTGCCATGCACTTTAAACTCA
131 TAATAATCAACCACGCACACTTAGTGCCATGCACTTTAAACTCA
32837471 CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
1 CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
*
32837536 TAAGGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
66 TAAAGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
*
32837601 TAATAATCAACCACGCACACTTAGTGCCATGTACTTTAAACTCA
131 TAATAATCAACCACGCACACTTAGTGCCATGCACTTTAAACTCA
32837645 CACACTTAGTGC
1 CACACTTAGTGC
32837657 TGTACAATTT
Statistics
Matches: 181, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 181 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
TAAAGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
TAATAATCAACCACGCACACTTAGTGCCATGCACTTTAAACTCA
Found at i:32837650 original size:29 final size:30
Alignment explanation
Indices: 32837616--32837687 Score: 96
Period size: 29 Copynumber: 2.5 Consensus size: 30
32837606 ATCAACCACG
*
32837616 CACACTTAGTGCCATGTAC-TTTAAACTCA
1 CACACTTAGTGCCATGTACATTTAAACCCA
*
32837645 CACACTTAGTG-C-TGTACAATTTAAACCCG
1 CACACTTAGTGCCATGTAC-ATTTAAACCCA
32837674 CACACTTAGTGCCA
1 CACACTTAGTGCCA
32837688 ATCTCATGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
27 5 0.14
28 1 0.03
29 30 0.81
30 1 0.03
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.28
Consensus pattern (30 bp):
CACACTTAGTGCCATGTACATTTAAACCCA
Found at i:32843211 original size:40 final size:40
Alignment explanation
Indices: 32843152--32843419 Score: 455
Period size: 40 Copynumber: 6.7 Consensus size: 40
32843142 GAGCATTGGA
* *
32843152 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
*
32843192 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
* *
32843232 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
*
32843272 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
*
32843312 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
*
32843352 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
*
32843392 ATATGTCCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
32843420 ATGTGTTTGC
Statistics
Matches: 218, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 218 1.00
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
Found at i:32850644 original size:40 final size:40
Alignment explanation
Indices: 32850574--32850791 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
32850564 AAGCCAAGTA
* * * * *
32850574 CCTTCGGGATTTA-ACCGGGTATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
32850613 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
32850653 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
32850693 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
32850733 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
32850773 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
32850792 TTATCATCCA
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 13 0.08
40 150 0.92
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:32855377 original size:13 final size:12
Alignment explanation
Indices: 32855349--32855406 Score: 53
Period size: 13 Copynumber: 4.6 Consensus size: 12
32855339 TTTGACACTC
**
32855349 TGTTTTAAAATA
1 TGTTTTAAGTTA
32855361 TGTTTTCAAGTTA
1 TGTTTT-AAGTTA
*
32855374 TGTTTTTAAGCTA
1 TG-TTTTAAGTTA
*
32855387 TGTTTTAAATATA
1 TGTTTTAAGT-TA
32855400 TGTTTTA
1 TGTTTTA
32855407 TGTGTGTTCC
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
12 12 0.32
13 22 0.58
14 4 0.11
ACGTcount: A:0.29, C:0.03, G:0.12, T:0.55
Consensus pattern (12 bp):
TGTTTTAAGTTA
Found at i:32855931 original size:58 final size:59
Alignment explanation
Indices: 32855822--32855938 Score: 211
Period size: 58 Copynumber: 2.0 Consensus size: 59
32855812 CTCAGCCATT
32855822 CTAATAAGACAAATATGTGAGCATGTTTTCCTGTTATTCATTTTCAAACAATAACAAAC
1 CTAATAAGACAAATATGTGAGCATGTTTTCCTGTTATTCATTTTCAAACAATAACAAAC
32855881 CTAATAAGGA-AAATATGTGAGCATG-TTTCCTGTTATTCATTTTCAAACAATAACAAAC
1 CTAATAA-GACAAATATGTGAGCATGTTTTCCTGTTATTCATTTTCAAACAATAACAAAC
32855939 TAAGTTTTTT
Statistics
Matches: 57, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
58 33 0.58
59 22 0.39
60 2 0.04
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.33
Consensus pattern (59 bp):
CTAATAAGACAAATATGTGAGCATGTTTTCCTGTTATTCATTTTCAAACAATAACAAAC
Found at i:32862151 original size:43 final size:42
Alignment explanation
Indices: 32862088--32862199 Score: 127
Period size: 43 Copynumber: 2.6 Consensus size: 42
32862078 TACCTTACTA
* * * *
32862088 ATGCCATATCCCAGATATGGTCTTACATG-TGATCTCTTATTG
1 ATGCCATAACCCAGATATGGTCTTACATGAAG-TCTCATATCG
* * *
32862130 ATGCCAATAACCTAGCTATGGTCTTAAATGAAGTCTCATATCG
1 ATGCC-ATAACCCAGATATGGTCTTACATGAAGTCTCATATCG
*
32862173 ATGCCATATCCCAGATATGGTCTTACA
1 ATGCCATAACCCAGATATGGTCTTACA
32862200 CGAAAATCTC
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
42 23 0.40
43 33 0.58
44 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (42 bp):
ATGCCATAACCCAGATATGGTCTTACATGAAGTCTCATATCG
Found at i:32864384 original size:22 final size:22
Alignment explanation
Indices: 32864358--32864402 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
32864348 GATTTTCAAT
32864358 AATAATAATAAGAAAAT-AAATA
1 AATAATAATAAG-AAATCAAATA
*
32864380 AATAATAATGAGAAATCAAATA
1 AATAATAATAAGAAATCAAATA
32864402 A
1 A
32864403 TAGAATATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.69, C:0.02, G:0.07, T:0.22
Consensus pattern (22 bp):
AATAATAATAAGAAATCAAATA
Found at i:32868301 original size:23 final size:23
Alignment explanation
Indices: 32868275--32868319 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
32868265 TTTTACTTAG
32868275 CTTTTCCTAGCATACCAATGAGA
1 CTTTTCCTAGCATACCAATGAGA
32868298 CTTTTCCTAGCATACCAATGAG
1 CTTTTCCTAGCATACCAATGAG
32868320 CCAATCTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (23 bp):
CTTTTCCTAGCATACCAATGAGA
Found at i:32875964 original size:27 final size:27
Alignment explanation
Indices: 32875933--32876110 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
32875923 TAAATTGTAC
32875933 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32875960 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
** * *
32875986 ATGCACTAAGTGTGCGAACTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32876014 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32876042 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32876069 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32876096 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32876111 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 106 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32876047 original size:82 final size:81
Alignment explanation
Indices: 32875934--32876084 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
32875924 AAATTGTACA
* *
32875934 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32875998 TGCGAACTGACCATGCG
65 TGCGAACTGACCATGCG
** *
32876015 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
32876080 TGCGA
65 TGCGA
32876085 GTTGATTATA
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.24
82 47 0.75
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAACTGACCATGCG
Found at i:32884025 original size:27 final size:27
Alignment explanation
Indices: 32883994--32884171 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32883984 TAAATTGTAC
32883994 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32884021 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32884047 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32884075 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32884103 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32884130 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32884157 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32884172 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32884108 original size:82 final size:81
Alignment explanation
Indices: 32883995--32884150 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32883985 AAATTGTACA
* *
32883995 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32884059 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32884076 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
32884141 TGCGAGTTGA
65 TGCGAATTGA
32884151 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32884162 original size:82 final size:81
Alignment explanation
Indices: 32883991--32884171 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
32883981 GATTAAATTG
* *
32883991 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
32884056 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
32884072 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
32884136 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32884154 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32884172 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32885988 original size:224 final size:224
Alignment explanation
Indices: 32885598--32886047 Score: 864
Period size: 224 Copynumber: 2.0 Consensus size: 224
32885588 CTAAGTTGCG
32885598 CGATAAATAATTTATGCATATGACTTATAGTCGAATGGTCACTATGGGTTAAGTTTGAATGGTGA
1 CGATAAATAATTTATGCATATGACTTATAGTCGAATGGTCACTATGGGTTAAGTTTGAATGGTGA
32885663 AATGGAAATGTGATATGTTGAATGAGATGTGTTAATATATGATTAAATATGCATGATATTTGATG
66 AATGGAAATGTGATATGTTGAATGAGATGTGTTAATATATGATTAAATATGCATGATATTTGATG
32885728 TGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAGGC
131 TGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAGGC
32885793 TTCGTGCCAGTGATGTATATTCGGGCCTT
196 TTCGTGCCAGTGATGTATATTCGGGCCTT
32885822 CGATAAATAATTTATGCATATGACTTATAGTCGAATGGTCACTATGGGTTAAGTTTGAATGGTGA
1 CGATAAATAATTTATGCATATGACTTATAGTCGAATGGTCACTATGGGTTAAGTTTGAATGGTGA
*
32885887 AATGGAAATGTGATATGTTGAATGAGATGTGTTAATATATGATTAAATATGCATGATATTTTATG
66 AATGGAAATGTGATATGTTGAATGAGATGTGTTAATATATGATTAAATATGCATGATATTTGATG
*
32885952 TGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAATATCTGGGTTAAATCCCGCAGGC
131 TGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAGGC
* *
32886017 TTCGTGCCGGTGATGTATATTCGGGTCTT
196 TTCGTGCCAGTGATGTATATTCGGGCCTT
32886046 CG
1 CG
32886048 TGCCTAACAG
Statistics
Matches: 222, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
224 222 1.00
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (224 bp):
CGATAAATAATTTATGCATATGACTTATAGTCGAATGGTCACTATGGGTTAAGTTTGAATGGTGA
AATGGAAATGTGATATGTTGAATGAGATGTGTTAATATATGATTAAATATGCATGATATTTGATG
TGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAGGC
TTCGTGCCAGTGATGTATATTCGGGCCTT
Found at i:32886226 original size:43 final size:43
Alignment explanation
Indices: 32886011--32886231 Score: 343
Period size: 43 Copynumber: 5.1 Consensus size: 43
32886001 GTTAAATCCC
* *
32886011 GCAGGCTTCGTGCCGGTGATGTATATTCGGGTCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
32886054 ACAGCCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
32886097 GCAGGCTTCGTGCCGGTGATGTATATTCGGGTCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* * *
32886140 ACAGCCTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
32886183 GCAGGCTTCGTGCCAGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
32886226 GTAGGC
1 GCAGGC
32886232 GTAATGCCGG
Statistics
Matches: 160, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 160 1.00
ACGTcount: A:0.12, C:0.25, G:0.32, T:0.31
Consensus pattern (43 bp):
GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:32886244 original size:86 final size:86
Alignment explanation
Indices: 32886011--32886225 Score: 394
Period size: 86 Copynumber: 2.5 Consensus size: 86
32886001 GTTAAATCCC
32886011 GCAGGCTTCGTGCCGGTGATGTATATTCGGGTCTTCGTGCCTAACAGCCTTCGTGCCGGTGATGT
1 GCAGGCTTCGTGCCGGTGATGTATATTCGGGTCTTCGTGCCTAACAGCCTTCGTGCCGGTGATGT
32886076 GTATTCGGGCCTTCGTGCCTA
66 GTATTCGGGCCTTCGTGCCTA
*
32886097 GCAGGCTTCGTGCCGGTGATGTATATTCGGGTCTTCGTGCCTAACAGCCTTCGTGCTGGTGATGT
1 GCAGGCTTCGTGCCGGTGATGTATATTCGGGTCTTCGTGCCTAACAGCCTTCGTGCCGGTGATGT
32886162 GTATTCGGGCCTTCGTGCCTA
66 GTATTCGGGCCTTCGTGCCTA
* * *
32886183 GCAGGCTTCGTGCCAGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTATATTCGGGTCTTCGTGCCTA
32886226 GTAGGCGTAA
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 125 1.00
ACGTcount: A:0.12, C:0.25, G:0.32, T:0.32
Consensus pattern (86 bp):
GCAGGCTTCGTGCCGGTGATGTATATTCGGGTCTTCGTGCCTAACAGCCTTCGTGCCGGTGATGT
GTATTCGGGCCTTCGTGCCTA
Found at i:32889074 original size:28 final size:27
Alignment explanation
Indices: 32889011--32889162 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
32889001 ATATTAAGTC
* * *
32889011 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
32889038 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
32889066 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
32889093 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
32889121 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
32889148 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32889163 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:32889095 original size:55 final size:55
Alignment explanation
Indices: 32889011--32889162 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
32889001 ATATTAAGTC
* * *
32889011 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
32889066 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
32889121 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
32889163 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:32894309 original size:43 final size:43
Alignment explanation
Indices: 32894248--32894331 Score: 159
Period size: 43 Copynumber: 2.0 Consensus size: 43
32894238 GTTAAATCCC
32894248 GCAGGCTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTA
*
32894291 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCC
1 GCAGGCTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCC
32894332 GGTGATGTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.10, C:0.26, G:0.35, T:0.30
Consensus pattern (43 bp):
GCAGGCTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTA
Found at i:32894334 original size:27 final size:27
Alignment explanation
Indices: 32894296--32894358 Score: 117
Period size: 27 Copynumber: 2.3 Consensus size: 27
32894286 GCCTAGCAGG
*
32894296 CTTCGTGCCGGTGATGTGTATTCGGGC
1 CTTCGTGCCGGTGATGTATATTCGGGC
32894323 CTTCGTGCCGGTGATGTATATTCGGGC
1 CTTCGTGCCGGTGATGTATATTCGGGC
32894350 CTTCGTGCC
1 CTTCGTGCC
32894359 TAGCAGGCTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.08, C:0.25, G:0.33, T:0.33
Consensus pattern (27 bp):
CTTCGTGCCGGTGATGTATATTCGGGC
Found at i:32894338 original size:70 final size:70
Alignment explanation
Indices: 32894253--32894401 Score: 271
Period size: 70 Copynumber: 2.1 Consensus size: 70
32894243 ATCCCGCAGG
*
32894253 CTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATT
1 CTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTATATT
32894318 CGGGC
66 CGGGC
*
32894323 CTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGTCGGTGATGTATATT
1 CTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTATATT
32894388 CGGGC
66 CGGGC
*
32894393 TTTCGTGCC
1 CTTCGTGCC
32894402 TAACAGGCTT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 76 1.00
ACGTcount: A:0.10, C:0.24, G:0.33, T:0.33
Consensus pattern (70 bp):
CTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTATATT
CGGGC
Found at i:32894465 original size:43 final size:43
Alignment explanation
Indices: 32894323--32894452 Score: 224
Period size: 43 Copynumber: 3.0 Consensus size: 43
32894313 GTATTCGGGC
32894323 CTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTAGCAGG
1 CTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTAGCAGG
* * *
32894366 CTTCGTGTCGGTGATGTATATTCGGGCTTTCGTGCCTAACAGG
1 CTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTAGCAGG
*
32894409 CTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
1 CTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTAGCAGG
32894452 C
1 C
32894453 GTAATGCCGG
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 80 1.00
ACGTcount: A:0.12, C:0.25, G:0.32, T:0.32
Consensus pattern (43 bp):
CTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTAGCAGG
Found at i:32896651 original size:293 final size:294
Alignment explanation
Indices: 32896121--32896714 Score: 1127
Period size: 293 Copynumber: 2.0 Consensus size: 294
32896111 ACAGTCGCTT
32896121 AAAAATTCATATCTCGAGTTCCAAAACTCGAAATTAAGATCCGTAAATTTTTCCTGAAACTAGAC
1 AAAAATTCATATCTCGAGTTCCAAAACTCGAAATTAAGATCCGTAAATTTTTCCTGAAACTAGAC
32896186 TAATATATCTATCTACTAAATTTTTTTCTACAATTTTTGGTTGGGCCAATTAGTATAGTTTATTA
66 TAATATATCTATCTACTAAATTTTTTTCTACAATTTTTGGTTGGGCCAATTAGTATAGTTTATTA
* *
32896251 GTTAAAGTCTCCCCTGTTTTAAGGTTAGGCTATTCTGACCCCTGTGCACTATGAATCAAATTTCT
131 GTTAAAGTCTCCCCTATTTTAAGGTTAGGCTATTCTGACCCCTATGCACTATGAATCAAATTTCT
32896316 TTCTGTACAGAAATCCAATGACTATGTAGTTTGTTTCACTTAAAAATAGACTCAATAAGGAATCC
196 TTCTGTACAGAAATCCAATGACTATGTAGTTTGTTTCACTTAAAAATAGACTCAATAAGGAATCC
32896381 ATACATATAAATTTTGAGTCCAAATTATTTTTAC
261 ATACATATAAATTTTGAGTCCAAATTATTTTTAC
* *
32896415 AAAAATTCATATCTTGAGTTCCAAAACTCGAAATTAAGATCCGTAATTTTTTCCTGAAACTAGAC
1 AAAAATTCATATCTCGAGTTCCAAAACTCGAAATTAAGATCCGTAAATTTTTCCTGAAACTAGAC
32896480 TAATATATCTATCTACTAAATTTTTTTCTACAATTTTTGGTTGGGCCAATTAGT-TAGTTTATTA
66 TAATATATCTATCTACTAAATTTTTTTCTACAATTTTTGGTTGGGCCAATTAGTATAGTTTATTA
*
32896544 GTTAAAGTCTCCCCTATTTTAGGGTTAGGCTATTCTGACCCCTATGCACTATGAATCAAATTTCT
131 GTTAAAGTCTCCCCTATTTTAAGGTTAGGCTATTCTGACCCCTATGCACTATGAATCAAATTTCT
32896609 TTCTGTACAGAAATCCAATGACTATGTAGTTTGTTTCACTTAAAAATAGACTCAATAAGGAATCC
196 TTCTGTACAGAAATCCAATGACTATGTAGTTTGTTTCACTTAAAAATAGACTCAATAAGGAATCC
32896674 ATACATATAAATTTTGAGTCCAAATTATTTTTAC
261 ATACATATAAATTTTGAGTCCAAATTATTTTTAC
*
32896708 ACAAATT
1 AAAAATT
32896715 ATGGTGATTT
Statistics
Matches: 294, Mismatches: 6, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
293 177 0.60
294 117 0.40
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (294 bp):
AAAAATTCATATCTCGAGTTCCAAAACTCGAAATTAAGATCCGTAAATTTTTCCTGAAACTAGAC
TAATATATCTATCTACTAAATTTTTTTCTACAATTTTTGGTTGGGCCAATTAGTATAGTTTATTA
GTTAAAGTCTCCCCTATTTTAAGGTTAGGCTATTCTGACCCCTATGCACTATGAATCAAATTTCT
TTCTGTACAGAAATCCAATGACTATGTAGTTTGTTTCACTTAAAAATAGACTCAATAAGGAATCC
ATACATATAAATTTTGAGTCCAAATTATTTTTAC
Found at i:32897654 original size:46 final size:46
Alignment explanation
Indices: 32897587--32897853 Score: 237
Period size: 46 Copynumber: 5.8 Consensus size: 46
32897577 ATGTAACCCG
* *
32897587 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCAT
* * *
32897633 CCATAAGTGAACTCGGGCTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-G--G-GT-GTTCGCAT
* **
32897683 -C-TCAA--GAACTCAGACTCAACTCAACGAGTTCGGGCATTCGCAT
1 CCAT-AAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCAT
* *
32897726 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G--T-GTTCGCAT
* * * **
32897776 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCAT
32897819 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
32897854 AATGCTGAAA
Statistics
Matches: 175, Mismatches: 26, Indels: 40
0.73 0.11 0.17
Matches are distributed among these distances:
42 5 0.03
43 6 0.03
44 5 0.03
45 3 0.02
46 84 0.48
47 51 0.29
48 4 0.02
49 5 0.03
50 7 0.04
51 5 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCAT
Found at i:32897701 original size:93 final size:93
Alignment explanation
Indices: 32897595--32897852 Score: 435
Period size: 93 Copynumber: 2.8 Consensus size: 93
32897585 CGCCATAAGC
* * * *
32897595 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGGCTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32897660 CGAGTTCAGATGCCTAGTTACATCTCAA
66 CGAGTTCAGATGCCTAGTTACATCTCAA
*
32897688 GAACTCAGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* * *
32897753 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAA
*
32897781 GAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32897846 CGAGTTC
66 CGAGTTC
32897853 GAATGCTGAA
Statistics
Matches: 154, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 154 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAA
Found at i:32897809 original size:47 final size:47
Alignment explanation
Indices: 32897641--32897809 Score: 188
Period size: 47 Copynumber: 3.6 Consensus size: 47
32897631 ATCCATAAGT
* * *
32897641 GAACTCGGGCTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCAA
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAA
*
32897688 GAACTCAGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCATC-CATAA
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATCTC--AA
* * *
32897732 GTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 --GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAA
32897781 GAACTCAGACTCAACTCAACGAGTTCGGA
1 GAACTCAGACTCAACTCAACGAGTTCGGA
32897810 CGTTCGCATC
Statistics
Matches: 101, Mismatches: 10, Indels: 22
0.76 0.08 0.17
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 3 0.03
45 1 0.01
46 26 0.26
47 52 0.51
48 1 0.01
49 2 0.02
50 5 0.05
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (47 bp):
GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAA
Found at i:32903561 original size:13 final size:13
Alignment explanation
Indices: 32903543--32903567 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32903533 AATCACAAAT
32903543 AAATACACATATC
1 AAATACACATATC
32903556 AAATACACATAT
1 AAATACACATAT
32903568 TTTTTTCTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (13 bp):
AAATACACATATC
Found at i:32904915 original size:14 final size:15
Alignment explanation
Indices: 32904865--32904915 Score: 61
Period size: 14 Copynumber: 3.4 Consensus size: 15
32904855 ACTCATAACT
32904865 TATATTATATACATA
1 TATATTATATACATA
32904880 TA-ATTATATACAT-
1 TATATTATATACATA
*
32904893 TTTATTATTATAACATA
1 TATATTA-TAT-ACATA
32904910 TATATT
1 TATATT
32904916 GTACATATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
13 1 0.03
14 15 0.50
15 5 0.17
16 4 0.13
17 5 0.17
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (15 bp):
TATATTATATACATA
Found at i:32907441 original size:27 final size:27
Alignment explanation
Indices: 32907367--32907488 Score: 117
Period size: 27 Copynumber: 4.6 Consensus size: 27
32907357 TTAGTTTACC
* * *
32907367 AAATTACTGAAATACC-TCCAGTTGTA
1 AAATTACCGAAATACCGTCGATTTGTA
** *
32907393 AAATTACC-AAAGTACCCCCGATTTATA
1 AAATTACCGAAA-TACCGTCGATTTGTA
* *
32907420 AAATTACCCAAATATTC-TCGATTTGTA
1 AAATTACCGAAATA-CCGTCGATTTGTA
*
32907447 AAATTATCGAAATACCGTCGA-TTGTA
1 AAATTACCGAAATACCGTCGATTTGTA
32907473 AAATTACCGAAATACC
1 AAATTACCGAAATACC
32907489 CCTTTAGGGT
Statistics
Matches: 79, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
25 3 0.04
26 32 0.41
27 40 0.51
28 4 0.05
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACCGAAATACCGTCGATTTGTA
Found at i:32907511 original size:27 final size:27
Alignment explanation
Indices: 32907474--32907705 Score: 295
Period size: 27 Copynumber: 8.6 Consensus size: 27
32907464 TCGATTGTAA
* *
32907474 AATTACCGAAATACCCCTTTAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
* *
32907501 AATTACTGAAATACCCTTATAAGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
*
32907528 AATTA-TCGAAATACCCCTATAGGGCAG
1 AATTACT-GAAATACCCCTATAGGGTAG
* *
32907555 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
* *
32907582 AATTACCGAAATACCCCTATAGGATAG
1 AATTACTGAAATACCCCTATAGGGTAG
*
32907609 AATTACTGAAATACCTCTATAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
* *
32907636 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
* *
32907663 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
* * *
32907690 AACTACCGAGATACCC
1 AATTACTGAAATACCC
32907706 TCGTGGGGTA
Statistics
Matches: 178, Mismatches: 25, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 176 0.99
28 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (27 bp):
AATTACTGAAATACCCCTATAGGGTAG
Found at i:32907723 original size:27 final size:27
Alignment explanation
Indices: 32907444--32907723 Score: 162
Period size: 27 Copynumber: 10.4 Consensus size: 27
32907434 TTCTCGATTT
* * **
32907444 GTAAAATTATCGAAATACCGTCG-ATT
1 GTAAAATTACCGAAATACCCTCGTAGG
*
32907470 GTAAAATTACCGAAATACCC-CTTTAGG
1 GTAAAATTACCGAAATACCCTC-GTAGG
* * ** *
32907497 GTAGAATTACTGAAATACCCTTATAAG
1 GTAAAATTACCGAAATACCCTCGTAGG
* * *
32907524 GTAGAATTATCGAAATACCC-CTATAGG
1 GTAAAATTACCGAAATACCCTC-GTAGG
* * * *
32907551 GCAGAATTACTGAAATACCC-CTGTAAG
1 GTAAAATTACCGAAATACCCTC-GTAGG
* *
32907578 GTAGAATTACCGAAATACCC-CTATAGG
1 GTAAAATTACCGAAATACCCTC-GTAGG
* * * *
32907605 ATAGAATTACTGAAATA-CCTCTATAGG
1 GTAAAATTACCGAAATACCCTC-GTAGG
* * *
32907632 GTAGAATTACTGAAATACCCTTGTAGG
1 GTAAAATTACCGAAATACCCTCGTAGG
*
32907659 GTAGAAA-TACTGAAATACCC-CTGTAGG
1 GTA-AAATTACCGAAATACCCTC-GTAGG
* * * *
32907686 GTAGAACTACCGAGATACCCTCGTGGG
1 GTAAAATTACCGAAATACCCTCGTAGG
32907713 GTAAAATTACC
1 GTAAAATTACC
32907724 ATTTTGCCCC
Statistics
Matches: 208, Mismatches: 36, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
25 1 0.00
26 22 0.11
27 179 0.86
28 6 0.03
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
GTAAAATTACCGAAATACCCTCGTAGG
Found at i:32908054 original size:20 final size:20
Alignment explanation
Indices: 32908007--32908054 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
32907997 CAAAGGCTGT
*
32908007 GTGCCGTTATTGTGGGCTTC
1 GTGCCGATATTGTGGGCTTC
**
32908027 GTATCGATATTGTGGGCTTC
1 GTGCCGATATTGTGGGCTTC
32908047 GTGCCGAT
1 GTGCCGAT
32908055 TATAGACCCG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.10, C:0.19, G:0.33, T:0.38
Consensus pattern (20 bp):
GTGCCGATATTGTGGGCTTC
Found at i:32908355 original size:27 final size:26
Alignment explanation
Indices: 32908309--32908394 Score: 73
Period size: 27 Copynumber: 3.2 Consensus size: 26
32908299 TATTATCTGT
* * *
32908309 TTCTGGTGGCTATGCCACAAATATCTA
1 TTCTGGTGGCTCTACAAC-AATATCTA
*
32908336 TTCTGGTGGCTCTACAACAATATCTG
1 TTCTGGTGGCTCTACAACAATATCTA
* *** *
32908362 TATCTGGTGACTCTGTTACAATATCTG
1 T-TCTGGTGGCTCTACAACAATATCTA
32908389 TTCTGG
1 TTCTGG
32908395 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
26 13 0.26
27 37 0.74
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.37
Consensus pattern (26 bp):
TTCTGGTGGCTCTACAACAATATCTA
Found at i:32908571 original size:6 final size:6
Alignment explanation
Indices: 32908562--32908692 Score: 108
Period size: 6 Copynumber: 21.3 Consensus size: 6
32908552 CTGTCACCTA
*
32908562 ATTCTG ATTCTG ATTCTG ATTCTG ATTCT- ATTACCTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * *
32908611 ATTCTG -TCATCTA ATTCTG ATTCTG ATTCTG ATTCAG -TCAACTG ATTCTG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* * *
32908661 ATTCTA ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
32908693 AATGTTTCTT
Statistics
Matches: 101, Mismatches: 13, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
5 6 0.06
6 83 0.82
7 8 0.08
8 4 0.04
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:32908575 original size:31 final size:31
Alignment explanation
Indices: 32908540--32908671 Score: 153
Period size: 31 Copynumber: 4.3 Consensus size: 31
32908530 TTACCTAATC
* *
32908540 CTGATTCTGACTCTGTCACCTAATTCTGATT
1 CTGATTCTGATTCTGTCATCTAATTCTGATT
*
32908571 CTGATTCTGATTCTG--ATTCT-ATTACCTGATA
1 CTGATTCTGATTCTGTCA-TCTAATT--CTGATT
32908602 CTGATTCTGATTCTGTCATCTAATTCTGATT
1 CTGATTCTGATTCTGTCATCTAATTCTGATT
* * *
32908633 CTGATTCTGATTCAGTCAACTGATTCTGATT
1 CTGATTCTGATTCTGTCATCTAATTCTGATT
*
32908664 CTAATTCT
1 CTGATTCT
32908672 CATTTTGATT
Statistics
Matches: 87, Mismatches: 8, Indels: 12
0.81 0.07 0.11
Matches are distributed among these distances:
29 4 0.05
30 2 0.02
31 74 0.85
32 3 0.03
33 4 0.05
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.45
Consensus pattern (31 bp):
CTGATTCTGATTCTGTCATCTAATTCTGATT
Found at i:32908579 original size:25 final size:25
Alignment explanation
Indices: 32908512--32908579 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
32908502 TTGCATTCAC
* * *
32908512 ATTCTAATTCTGATTATGTTACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
* *
32908537 ATCCTGATTCTGACTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
32908562 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
32908580 ATTCTGATTC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.44
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:32908599 original size:25 final size:25
Alignment explanation
Indices: 32908571--32908640 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
32908561 AATTCTGATT
*
32908571 CTGATTCTGATTCTGATTCTATTAC
1 CTGATTCTGATTCTGATTCTATCAC
* * *
32908596 CTGATACTGATTCTGATTCTGTCAT
1 CTGATTCTGATTCTGATTCTATCAC
*
32908621 CTAATTCTGATTCTGATTCT
1 CTGATTCTGATTCTGATTCT
32908641 GATTCAGTCA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTATCAC
Found at i:32908606 original size:37 final size:37
Alignment explanation
Indices: 32908540--32908616 Score: 109
Period size: 37 Copynumber: 2.1 Consensus size: 37
32908530 TTACCTAATC
* *
32908540 CTGATTCTGACTCTGTCACCTAATTCTGATTCTGATT
1 CTGATTCTGACTCTATCACCTAATACTGATTCTGATT
* * *
32908577 CTGATTCTGATTCTATTACCTGATACTGATTCTGATT
1 CTGATTCTGACTCTATCACCTAATACTGATTCTGATT
32908614 CTG
1 CTG
32908617 TCATCTAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.19, C:0.22, G:0.14, T:0.44
Consensus pattern (37 bp):
CTGATTCTGACTCTATCACCTAATACTGATTCTGATT
Found at i:32908609 original size:62 final size:62
Alignment explanation
Indices: 32908512--32908645 Score: 205
Period size: 62 Copynumber: 2.2 Consensus size: 62
32908502 TTGCATTCAC
* * *
32908512 ATTCTAATTCTGATTATGTTACCTAATCCTGATTCTGACTCTGTCACCTAATTCTGATTCTG
1 ATTCTGATTCTGATTATATTACCTAATACTGATTCTGACTCTGTCACCTAATTCTGATTCTG
* * * *
32908574 ATTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTCTGTCATCTAATTCTGATTCTG
1 ATTCTGATTCTGATTATATTACCTAATACTGATTCTGACTCTGTCACCTAATTCTGATTCTG
32908636 ATTCTGATTC
1 ATTCTGATTC
32908646 AGTCAACTGA
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 65 1.00
ACGTcount: A:0.22, C:0.21, G:0.12, T:0.46
Consensus pattern (62 bp):
ATTCTGATTCTGATTATATTACCTAATACTGATTCTGACTCTGTCACCTAATTCTGATTCTG
Found at i:32908641 original size:25 final size:25
Alignment explanation
Indices: 32908574--32908665 Score: 91
Period size: 25 Copynumber: 3.7 Consensus size: 25
32908564 TCTGATTCTG
* * * *
32908574 ATTCTGATTCTGATTCTATTACCTG
1 ATTCTGATTCTGATTCTGTCATCTA
*
32908599 ATACTGATTCTGATTCTGTCATCTA
1 ATTCTGATTCTGATTCTGTCATCTA
32908624 ATTCTGATTCTGATTCTGATTCAGTC-A
1 ATTCTGATTCTGATTCTG--TCA-TCTA
32908651 A--CTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
32908666 AATTCTCATT
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
25 51 0.88
27 5 0.09
28 2 0.03
ACGTcount: A:0.22, C:0.20, G:0.13, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCATCTA
Found at i:32915692 original size:46 final size:46
Alignment explanation
Indices: 32915589--32915741 Score: 146
Period size: 46 Copynumber: 3.3 Consensus size: 46
32915579 TACCCGTTTG
** * * * *
32915589 GGTTAAACCTACACAAATAATGAATCATAGTGTCTGGTCACCC-GTAA
1 GGTTAAACCTACATGAATAA-G-ATAATAGTGCCTAGTCACCCACTAA
* *
32915636 GGATTGAACCTACATGAATAAGATAATAGTGCCTAGTCACCCATTAA
1 GG-TTAAACCTACATGAATAAGATAATAGTGCCTAGTCACCCACTAA
** * * *
32915683 GGTTAAACCTACATGAACCAGAGAATAGTGCCTAGTCACCTACTAG
1 GGTTAAACCTACATGAATAAGATAATAGTGCCTAGTCACCCACTAA
*
32915729 GGTTGAACCTACA
1 GGTTAAACCTACA
32915742 CAACAAATAG
Statistics
Matches: 89, Mismatches: 15, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
46 66 0.74
47 8 0.09
48 15 0.17
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (46 bp):
GGTTAAACCTACATGAATAAGATAATAGTGCCTAGTCACCCACTAA
Found at i:32921735 original size:67 final size:67
Alignment explanation
Indices: 32921627--32921764 Score: 213
Period size: 67 Copynumber: 2.1 Consensus size: 67
32921617 TACTTCATAT
* ** * * *
32921627 TGTCCTGGTAGACTCTCTATGTTGTCATAGTTGAGCTATGGTCTTACACATTATACCCCATGTTT
1 TGTCCTAGTAGACTCTCTATGTTACCATAGTCGAGCTATGGTCTTACACATCATACCCAATGTTT
32921692 AA
66 AA
*
32921694 TGTCCTAGTGGACTCTCTATGTTACCATAGTCGAGCTATGGTCTTACACATCATACCCAATGTTT
1 TGTCCTAGTAGACTCTCTATGTTACCATAGTCGAGCTATGGTCTTACACATCATACCCAATGTTT
32921759 AA
66 AA
32921761 TGTC
1 TGTC
32921765 TTACACATTA
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
67 64 1.00
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.37
Consensus pattern (67 bp):
TGTCCTAGTAGACTCTCTATGTTACCATAGTCGAGCTATGGTCTTACACATCATACCCAATGTTT
AA
Found at i:32922494 original size:16 final size:16
Alignment explanation
Indices: 32922473--32922516 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
32922463 GGTTCACTAG
*
32922473 AATGGAATAGGGATGT
1 AATGGAATAGAGATGT
*
32922489 AATGGAATAGAGTTGT
1 AATGGAATAGAGATGT
*
32922505 AATGAAATAGAG
1 AATGGAATAGAG
32922517 CTATAATCAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.43, C:0.00, G:0.32, T:0.25
Consensus pattern (16 bp):
AATGGAATAGAGATGT
Found at i:32926438 original size:44 final size:44
Alignment explanation
Indices: 32926389--32926476 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
32926379 TTGTAGGACA
32926389 TCGGAAGAGATCTCAGTAGCAGTCATCGCGAATCAAGTGTGTAC
1 TCGGAAGAGATCTCAGTAGCAGTCATCGCGAATCAAGTGTGTAC
* *
32926433 TCGGAAGAGATCTCAGTAGCAGTCGTCGCGAATCAGGTGTGTAC
1 TCGGAAGAGATCTCAGTAGCAGTCATCGCGAATCAAGTGTGTAC
32926477 CGAAACCCTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (44 bp):
TCGGAAGAGATCTCAGTAGCAGTCATCGCGAATCAAGTGTGTAC
Found at i:32935767 original size:45 final size:45
Alignment explanation
Indices: 32935688--32935888 Score: 243
Period size: 45 Copynumber: 4.6 Consensus size: 45
32935678 TGCTAAATAG
* * *
32935688 GGTCTTACAC-AAATCA-A-ATA-CGATGCCGATGTCCCAGACAT
1 GGTCTTACACGAAAACACATATATCGATGCCAACGTCCCAGACAT
*
32935729 GGTCTTACACG-TAACTACATATATCGATGCCAACGTCCCAGACAT
1 GGTCTTACACGAAAAC-ACATATATCGATGCCAACGTCCCAGACAT
* **
32935774 GGTCTTACACGAAAACACAAATATCGATGCCAACGTCCCAGATGT
1 GGTCTTACACGAAAACACATATATCGATGCCAACGTCCCAGACAT
* * **
32935819 GGTTTTACACAAAAACACATATATTAATGCCAACGTCCCAGA-AGT
1 GGTCTTACACGAAAACACATATATCGATGCCAACGTCCCAGACA-T
32935864 GGTCTTACACGAAAACACATATATC
1 GGTCTTACACGAAAACACATATATC
32935889 AAAATCCTAT
Statistics
Matches: 136, Mismatches: 17, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
41 12 0.09
42 1 0.01
43 1 0.01
44 3 0.02
45 116 0.85
46 3 0.02
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.23
Consensus pattern (45 bp):
GGTCTTACACGAAAACACATATATCGATGCCAACGTCCCAGACAT
Found at i:32936999 original size:14 final size:15
Alignment explanation
Indices: 32936982--32937010 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
32936972 GCACGAAAAT
32936982 TTCACACAT-ATAAA
1 TTCACACATAATAAA
32936996 TTCACACATAATAAA
1 TTCACACATAATAAA
32937011 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:32941947 original size:21 final size:21
Alignment explanation
Indices: 32941901--32941939 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
32941891 GACTAAACAG
32941901 AAAACTTTACAATTTTTTTAC
1 AAAACTTTACAATTTTTTTAC
*
32941922 AAAAC-TTAGAATTTTTTT
1 AAAACTTTACAATTTTTTT
32941940 CACTAAACAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.38, C:0.10, G:0.03, T:0.49
Consensus pattern (21 bp):
AAAACTTTACAATTTTTTTAC
Found at i:32945811 original size:43 final size:43
Alignment explanation
Indices: 32945735--32945821 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 43
32945725 ATTTTGATTA
* *
32945735 ACTTGTCCATGTCACAACTCTATCTATTAAATGTCGCGACTTT
1 ACTTGTCCATGTCACAACTCTAACTATTAAATGTCACGACTTT
* * * *
32945778 ACTTGTCCATGTCACGAGTCCTAACT-TTCAATGTCATGACTTT
1 ACTTGTCCATGTCACAACT-CTAACTATTAAATGTCACGACTTT
32945821 A
1 A
32945822 ATCGTAGCCC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
43 32 0.86
44 5 0.14
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (43 bp):
ACTTGTCCATGTCACAACTCTAACTATTAAATGTCACGACTTT
Found at i:32960981 original size:44 final size:44
Alignment explanation
Indices: 32960877--32960981 Score: 149
Period size: 44 Copynumber: 2.4 Consensus size: 44
32960867 ATGTAATTTT
* * * *
32960877 GTGTAAGACCACATCT-AGGAGGTTGGCATCGATTTGAGATTTTC
1 GTGTAAGACCACGTCTGA-GACGTTGGCATCAATTTGAGATTTAC
32960921 GTGTAAGACCACGTCTGAGACGTTGGCATCAATTTGAGATTTAC
1 GTGTAAGACCACGTCTGAGACGTTGGCATCAATTTGAGATTTAC
*
32960965 GTGTAAGACCATGTCTG
1 GTGTAAGACCACGTCTG
32960982 GGACATCTGC
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
44 54 0.98
45 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (44 bp):
GTGTAAGACCACGTCTGAGACGTTGGCATCAATTTGAGATTTAC
Found at i:32960994 original size:44 final size:44
Alignment explanation
Indices: 32960877--32960995 Score: 134
Period size: 44 Copynumber: 2.7 Consensus size: 44
32960867 ATGTAATTTT
* ** * *
32960877 GTGTAAGACCACATCT-AGGAGGTTGGCATCGATTTGAGATTTTC
1 GTGTAAGACCACGTCTGA-GACATTGGCATCAATTTGAGATTTAC
*
32960921 GTGTAAGACCACGTCTGAGACGTTGGCATCAATTTGAGATTTAC
1 GTGTAAGACCACGTCTGAGACATTGGCATCAATTTGAGATTTAC
* *
32960965 GTGTAAGACCATGTCTGGGACATCT-GCATCA
1 GTGTAAGACCACGTCTGAGACAT-TGGCATCA
32960996 TAATTGATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
44 64 0.97
45 2 0.03
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (44 bp):
GTGTAAGACCACGTCTGAGACATTGGCATCAATTTGAGATTTAC
Found at i:32962180 original size:53 final size:53
Alignment explanation
Indices: 32962117--32962222 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
32962107 AATTAAAAGT
32962117 TAGTCTTGAGCAATGCCTAGACACACGGGTGTGTCTACTGGCCGTGTGAGTGG
1 TAGTCTTGAGCAATGCCTAGACACACGGGTGTGTCTACTGGCCGTGTGAGTGG
32962170 TAGTCTTGAGCAATGCCTAGACACACGGGTGTGTCTACTGGCCGTGTGAGTGG
1 TAGTCTTGAGCAATGCCTAGACACACGGGTGTGTCTACTGGCCGTGTGAGTGG
32962223 CACAACGGGC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.19, C:0.21, G:0.34, T:0.26
Consensus pattern (53 bp):
TAGTCTTGAGCAATGCCTAGACACACGGGTGTGTCTACTGGCCGTGTGAGTGG
Found at i:32968760 original size:42 final size:43
Alignment explanation
Indices: 32968705--32968825 Score: 131
Period size: 43 Copynumber: 2.8 Consensus size: 43
32968695 ACCAATTTGA
32968705 GATTTACGTGTAAGACCATGTCTGGGACA-TCGGCATCG-TAATT
1 GATTT-CGTGTAAGACCATGTCTGGGACAGT-GGCATCGATAATT
* * *
32968748 GATTTCGTGTAAGACCTTGTCTGGGATAGTGGCATCGATATTT
1 GATTTCGTGTAAGACCATGTCTGGGACAGTGGCATCGATAATT
* * **
32968791 GATTACATGTAAGACCGCGTCTGGGAC-GTTGGCAT
1 GATTTCGTGTAAGACCATGTCTGGGACAG-TGGCAT
32968826 TGTACATGCT
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
42 29 0.43
43 38 0.57
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.31
Consensus pattern (43 bp):
GATTTCGTGTAAGACCATGTCTGGGACAGTGGCATCGATAATT
Found at i:32968824 original size:43 final size:43
Alignment explanation
Indices: 32968625--32968825 Score: 144
Period size: 44 Copynumber: 4.7 Consensus size: 43
32968615 TGTAATTTTG
* * *
32968625 TGTAAGACCACGTCTGGGGCGTTGGCATCGAT-TTGAGATTGTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATT-TGATT-ACA
* * * *
32968669 TGTCTA-ACCACATCTGGGACGTTGGCA-CCA-ATTTGAGATTTACG
1 TGT-AAGACCACGTCTGGGACGTTGGCATCGATATTT--GA-TTACA
* * * * * *
32968713 TGTAAGACCATGTCTGGGACATCGGCATCG-TAATTGATTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
** *
32968755 TGTAAGACCTTGTCTGGGATAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCACGTCTGGGA-CGTTGGCATCGATATTTGATTACA
*
32968798 TGTAAGACCGCGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
32968826 TGTACATGCT
Statistics
Matches: 121, Mismatches: 25, Indels: 23
0.72 0.15 0.14
Matches are distributed among these distances:
42 30 0.25
43 39 0.32
44 45 0.37
45 7 0.06
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:32972557 original size:47 final size:47
Alignment explanation
Indices: 32972503--32972593 Score: 182
Period size: 47 Copynumber: 1.9 Consensus size: 47
32972493 ACCTTTTATC
32972503 TCCTCTTTTCTTTAAGCCAAACTCTTGATCTTTTCTTCCCTATTGAA
1 TCCTCTTTTCTTTAAGCCAAACTCTTGATCTTTTCTTCCCTATTGAA
32972550 TCCTCTTTTCTTTAAGCCAAACTCTTGATCTTTTCTTCCCTATT
1 TCCTCTTTTCTTTAAGCCAAACTCTTGATCTTTTCTTCCCTATT
32972594 TTAATCGAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.18, C:0.29, G:0.05, T:0.48
Consensus pattern (47 bp):
TCCTCTTTTCTTTAAGCCAAACTCTTGATCTTTTCTTCCCTATTGAA
Found at i:32973530 original size:29 final size:29
Alignment explanation
Indices: 32973488--32973566 Score: 101
Period size: 29 Copynumber: 2.8 Consensus size: 29
32973478 ACATGGCTTG
*
32973488 GAAT-TGATTCGGGCC-AGATGGGCCATAT
1 GAATGTGATTTGGGCCTA-ATGGGCCATAT
32973516 GAATGTGATTTGGGCCTAATGGGCCATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAT
* *
32973545 GAATGAGA-TTGGGCCTAGTGGG
1 GAATGTGATTTGGGCCTAATGGG
32973567 ACAATCCCTG
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
28 17 0.37
29 28 0.61
30 1 0.02
ACGTcount: A:0.24, C:0.14, G:0.35, T:0.27
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAATGGGCCATAT
Found at i:32984011 original size:10 final size:10
Alignment explanation
Indices: 32983996--32984020 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
32983986 TAATGAAAGT
32983996 TTAAACAAAA
1 TTAAACAAAA
32984006 TTAAACAAAA
1 TTAAACAAAA
32984016 TTAAA
1 TTAAA
32984021 GAATGAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (10 bp):
TTAAACAAAA
Found at i:32984883 original size:38 final size:37
Alignment explanation
Indices: 32984772--32984883 Score: 134
Period size: 38 Copynumber: 2.9 Consensus size: 37
32984762 TTTATCGTTA
* * *
32984772 ATTCGGGCTTTGTGCCTAACAGGCTTCGTGCTGATAAT
1 ATTCGGGCTTTGTGCCTAGCAGGCTTCGTGC-GGTGAT
**
32984810 ATTCAAGCTTTGTGCCTAGCAGGCTTCGTGCCGGTGAT
1 ATTCGGGCTTTGTGCCTAGCAGGCTTCGTG-CGGTGAT
* *
32984848 ATTCGGGCTTTGTGCCTAGCAGACTTAGTGTCGGTG
1 ATTCGGGCTTTGTGCCTAGCAGGCTTCGTG-CGGTG
32984884 TAATTGTATT
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
38 62 0.98
39 1 0.02
ACGTcount: A:0.16, C:0.21, G:0.29, T:0.33
Consensus pattern (37 bp):
ATTCGGGCTTTGTGCCTAGCAGGCTTCGTGCGGTGAT
Found at i:32987894 original size:30 final size:29
Alignment explanation
Indices: 32987860--32987921 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 29
32987850 TTACGTGTAG
*
32987860 GGGACACACGGTTGAACCACACGCCCAGTA
1 GGGACACACGGTTGAACCACACGACCA-TA
**
32987890 GGGACACACGGTTGGTCCACACGACCATA
1 GGGACACACGGTTGAACCACACGACCATA
32987919 GGG
1 GGG
32987922 CAGACCTTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 5 0.17
30 24 0.83
ACGTcount: A:0.27, C:0.31, G:0.31, T:0.11
Consensus pattern (29 bp):
GGGACACACGGTTGAACCACACGACCATA
Found at i:32988767 original size:44 final size:49
Alignment explanation
Indices: 32988679--32988799 Score: 130
Period size: 50 Copynumber: 2.6 Consensus size: 49
32988669 TCACTTACAG
* *
32988679 ATGCCATGTCCCAGACATGGTCTTACACAAGTTCTAGTATATCT-GT-GCCA
1 ATGCCATGTCCCAGACATGGTCTTACAC-A--TCGAGCATATCTGGTAGCCA
*
32988729 ATGCCATGTCCCAGACATGGTCTTACAC-T-GA-CATATCTGGTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACATCGAGCATATCTGGTAGCCA
*
32988775 ATG-CATGTCCCCGACAT-GTCTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
32988800 TTGGCTTACG
Statistics
Matches: 65, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
44 14 0.22
45 16 0.25
46 7 0.11
50 28 0.43
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACATCGAGCATATCTGGTAGCCA
Found at i:32988784 original size:45 final size:43
Alignment explanation
Indices: 32988717--32988847 Score: 122
Period size: 46 Copynumber: 2.9 Consensus size: 43
32988707 AAGTTCTAGT
*
32988717 ATATCTGT-GCCAATGCCATGTCCCAGACATGGTCTTACACTGAC
1 ATATCTGTAGCCGATG-CATGTCCCAGACAT-GTCTTACACTGAC
* * *
32988761 ATATCTGGTAGCCGATGCATGTCCCCGACATGTCTTACATTGGC
1 ATATCT-GTAGCCGATGCATGTCCCAGACATGTCTTACACTGAC
* * *
32988805 TTACGTCTCG-AGGCCGAAGCATGTCCCAGAAATGTCTTACACT
1 ATA--TCT-GTA-GCCGATGCATGTCCCAGACATGTCTTACACT
32988848 AGCACTCATC
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
44 19 0.26
45 16 0.22
46 37 0.51
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (43 bp):
ATATCTGTAGCCGATGCATGTCCCAGACATGTCTTACACTGAC
Found at i:32994824 original size:40 final size:40
Alignment explanation
Indices: 32994742--32994850 Score: 121
Period size: 40 Copynumber: 2.8 Consensus size: 40
32994732 CGAGGTTTAG
** * * * *
32994742 CCGGATATAACCACTTGCAC-AAGGCCTTCGGGTCTTAAC
1 CCGGATATAGTCACTAGCACAAATGCCTTCAGGACTTAAC
* * *
32994781 CCGGATATGGTCACTAGCATAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCAGGACTTAAC
*
32994821 CCGGATATAGTCGCTAGCACAAATGCCTTC
1 CCGGATATAGTCACTAGCACAAATGCCTTC
32994851 GGATGTAGTC
Statistics
Matches: 57, Mismatches: 12, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
39 15 0.26
40 42 0.74
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCAGGACTTAAC
Found at i:32994862 original size:28 final size:29
Alignment explanation
Indices: 32994822--32994881 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
32994812 GGACTTAGCC
*
32994822 CGGATATAGTCGC-TAGCACAAATGCCTT
1 CGGATATAGTCGCTTAGCACAAAAGCCTT
*
32994850 CGGATGTAGTCGCTTAGCACAAAAGCCTT
1 CGGATATAGTCGCTTAGCACAAAAGCCTT
32994879 CGG
1 CGG
32994882 GACTTAGCCC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 12 0.41
29 17 0.59
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (29 bp):
CGGATATAGTCGCTTAGCACAAAAGCCTT
Found at i:32996130 original size:38 final size:38
Alignment explanation
Indices: 32996088--32996163 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
32996078 CAAGAACTCC
32996088 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
32996126 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
32996164 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:33002980 original size:41 final size:40
Alignment explanation
Indices: 33002817--33002997 Score: 197
Period size: 40 Copynumber: 4.5 Consensus size: 40
33002807 AATCAAGCAT
** ** * *
33002817 CTTCGGGGTTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
33002855 CTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
33002895 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
33002935 CTTC-GGATCTTAGTCCGGATCTAGTCACTTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAATGC
33002976 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
33002998 CATTCGAGTA
Statistics
Matches: 118, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
38 10 0.08
39 18 0.15
40 60 0.51
41 27 0.23
42 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:33016570 original size:15 final size:15
Alignment explanation
Indices: 33016550--33016580 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
33016540 ATCTTAACTA
33016550 ACTGAAGCAACCTAG
1 ACTGAAGCAACCTAG
33016565 ACTGAAGCAACCTAG
1 ACTGAAGCAACCTAG
33016580 A
1 A
33016581 AGGCAACTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.26, G:0.19, T:0.13
Consensus pattern (15 bp):
ACTGAAGCAACCTAG
Found at i:33025969 original size:86 final size:85
Alignment explanation
Indices: 33025811--33025974 Score: 215
Period size: 86 Copynumber: 1.9 Consensus size: 85
33025801 GAAAAGCTCG
* * * *
33025811 TACAATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAAATATTGATGCCACTGTCCTAGATA
1 TACAATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATTGATGCCACTGTCCCAGACA
33025876 GGGTCTTACACGAAATCAAA
66 GGGTCTTACACGAAATCAAA
* * *
33025896 TACAATGCCAATGTCCCAGATATGGTCTTACATGTAAATCATAA-GTTGATGCCAAC-GTCCCAG
1 TACAATGCCAACGTCCCAGACATGGTCTTACATGT-AATCA-AATATTGATGCC-ACTGTCCCAG
*
33025959 ACATGGTCTTACACGA
63 ACAGGGTCTTACACGA
33025975 TAACACATAT
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
85 31 0.46
86 33 0.49
87 4 0.06
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (85 bp):
TACAATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATTGATGCCACTGTCCCAGACA
GGGTCTTACACGAAATCAAA
Found at i:33027326 original size:30 final size:31
Alignment explanation
Indices: 33027290--33027349 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
33027280 GCTTCGGAGA
* *
33027290 GTCACAC-GCCCGTGTGGATTGGGCCATGTG
1 GTCACACAGCCCATGTGGATTGGGACATGTG
*
33027320 GTCACACAAGTCCATGTGGATTGGGACATG
1 GTCACAC-AGCCCATGTGGATTGGGACATG
33027350 CCCGAGTCCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 7 0.28
32 18 0.72
ACGTcount: A:0.20, C:0.23, G:0.33, T:0.23
Consensus pattern (31 bp):
GTCACACAGCCCATGTGGATTGGGACATGTG
Found at i:33028988 original size:32 final size:33
Alignment explanation
Indices: 33028910--33029071 Score: 188
Period size: 32 Copynumber: 5.0 Consensus size: 33
33028900 TTTCTTTCTG
**
33028910 AGTGGTATACACAAAGTATACCTTTCCTTTTCA
1 AGTGGTATACACAAAGTATACCTAACCTTTTCA
**
33028943 TA-TGGTATACACAAAGTATACCTTTCCTTTTCA
1 -AGTGGTATACACAAAGTATACCTAACCTTTTCA
* *
33028976 AGT-GTATACACAAAGTGTACATAACCTTTTCA
1 AGTGGTATACACAAAGTATACCTAACCTTTTCA
* * *
33029008 AGT-GTACACACAAAGTGTACATAACCTTTTCA
1 AGTGGTATACACAAAGTATACCTAACCTTTTCA
* *
33029040 TGTGGTATACAGAAAGTAT-CCTAACCTTTTCA
1 AGTGGTATACACAAAGTATACCTAACCTTTTCA
33029072 CATTCGATAC
Statistics
Matches: 116, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
32 71 0.61
33 44 0.38
34 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.34
Consensus pattern (33 bp):
AGTGGTATACACAAAGTATACCTAACCTTTTCA
Found at i:33029128 original size:30 final size:29
Alignment explanation
Indices: 33029064--33029162 Score: 153
Period size: 29 Copynumber: 3.4 Consensus size: 29
33029054 AGTATCCTAA
*
33029064 CCTTTTCACATTCGATACCCAAAGCTATC
1 CCTTTTCACATTCGATAGCCAAAGCTATC
*
33029093 CCTTTTCACATTCGATAGCCTAAGCTATCC
1 CCTTTTCACATTCGATAGCCAAAGCTAT-C
* *
33029123 CCTTTTTACATTCGATAGCAAAAGCTATC
1 CCTTTTCACATTCGATAGCCAAAGCTATC
33029152 CCTTTTCACAT
1 CCTTTTCACAT
33029163 GGTATACACA
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
29 37 0.59
30 26 0.41
ACGTcount: A:0.26, C:0.31, G:0.08, T:0.34
Consensus pattern (29 bp):
CCTTTTCACATTCGATAGCCAAAGCTATC
Found at i:33033663 original size:16 final size:17
Alignment explanation
Indices: 33033642--33033675 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
33033632 CGAACCCTAG
*
33033642 CTTTCTTTTTTAT-TTT
1 CTTTCTTATTTATGTTT
33033658 CTTTCTTATTTATGTTT
1 CTTTCTTATTTATGTTT
33033675 C
1 C
33033676 GGCAAGAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.09, C:0.15, G:0.03, T:0.74
Consensus pattern (17 bp):
CTTTCTTATTTATGTTT
Found at i:33043204 original size:40 final size:40
Alignment explanation
Indices: 33043111--33043204 Score: 116
Period size: 40 Copynumber: 2.4 Consensus size: 40
33043101 GACTATGTTC
*
33043111 GGCACTAAGTGTGCGATTTGAAATAGCTTCGGCTATAAAT
1 GGCACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAAT
* * * * * **
33043151 AGCATTAACTGTGCGAATTGGAATAGCTTTGGCTATATGT
1 GGCACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAAT
33043191 GGCACTAAGTGTGC
1 GGCACTAAGTGTGC
33043205 AATATTGAGA
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.31
Consensus pattern (40 bp):
GGCACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAAT
Found at i:33044146 original size:13 final size:13
Alignment explanation
Indices: 33044128--33044153 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
33044118 ATATTATAAT
33044128 TATTTTATGTTAA
1 TATTTTATGTTAA
33044141 TATTTTATGTTAA
1 TATTTTATGTTAA
33044154 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:33045569 original size:40 final size:40
Alignment explanation
Indices: 33045521--33045726 Score: 326
Period size: 40 Copynumber: 5.2 Consensus size: 40
33045511 GGACTAAGAT
* *
33045521 CCGAAGGCATTTGTGGTAGTGACTATATCCGAGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
33045561 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTT
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
33045601 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
33045641 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
33045681 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
33045720 CCGAAGG
1 CCGAAGG
33045727 TACTTGGGTT
Statistics
Matches: 155, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 15 0.10
40 138 0.89
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Done.