Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 106 of 144
Found at i:32606153 original size:41 final size:41
Alignment explanation
Indices: 32606063--32606154 Score: 98
Period size: 41 Copynumber: 2.2 Consensus size: 41
32606053 CCTTAACTCG
* * *
32606063 ACCCCTAAATCCCTAAACCTTAAATCCCTAACTCTAACATCTA
1 ACCCCT-AA-CCCTAAACATTAAATCCCTAACCCTAACACCTA
32606106 ACCCCTAACCCTAAACATTAAATCCC-AACCCTTAA-ACCATA
1 ACCCCTAACCCTAAACATTAAATCCCTAACCC-TAACACC-TA
*
32606147 ATCCCTAA
1 ACCCCTAA
32606155 TTCATAATCC
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
40 6 0.14
41 29 0.67
42 2 0.05
43 6 0.14
ACGTcount: A:0.39, C:0.38, G:0.00, T:0.23
Consensus pattern (41 bp):
ACCCCTAACCCTAAACATTAAATCCCTAACCCTAACACCTA
Found at i:32606171 original size:15 final size:15
Alignment explanation
Indices: 32606143--32606185 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
32606133 ACCCTTAAAC
32606143 CATAATCCCT-AATT
1 CATAATCCCTAAATT
32606157 CATAATCCCTAAATT
1 CATAATCCCTAAATT
*
32606172 CATACTCCCTAAAT
1 CATAATCCCTAAAT
32606186 CTTAAAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.37, C:0.30, G:0.00, T:0.33
Consensus pattern (15 bp):
CATAATCCCTAAATT
Found at i:32606428 original size:16 final size:15
Alignment explanation
Indices: 32606369--32606425 Score: 62
Period size: 16 Copynumber: 3.7 Consensus size: 15
32606359 CCCTAACTTT
*
32606369 TAACCCCTAACACGTC
1 TAACCCCTAAC-CCTC
32606385 TAACCCCTAACCCT-
1 TAACCCCTAACCCTC
*
32606399 TGAATCCCTTAACCCTC
1 T-AA-CCCCTAACCCTC
32606416 TAACCCCTAA
1 TAACCCCTAA
32606426 ACCTTAAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
14 1 0.03
15 10 0.29
16 23 0.66
17 1 0.03
ACGTcount: A:0.30, C:0.44, G:0.04, T:0.23
Consensus pattern (15 bp):
TAACCCCTAACCCTC
Found at i:32606460 original size:14 final size:14
Alignment explanation
Indices: 32606441--32606477 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
32606431 AAATACCAAC
*
32606441 CCCTAATCCATAAT
1 CCCTAAACCATAAT
*
32606455 CCCTAAACCATACT
1 CCCTAAACCATAAT
32606469 CCCTAAACC
1 CCCTAAACC
32606478 TTAAAATATG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.35, C:0.43, G:0.00, T:0.22
Consensus pattern (14 bp):
CCCTAAACCATAAT
Found at i:32606524 original size:291 final size:286
Alignment explanation
Indices: 32605973--32606577 Score: 862
Period size: 291 Copynumber: 2.1 Consensus size: 286
32605963 AATATATTTG
* *
32605973 ATTTATTATTATCTATTTTACAATTATATAAGAACATGTTTAAAATATAAATTAACAAAATAATT
1 ATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAACAAAATAATT
* * * *
32606038 AATCTAAACTCAAAACCTTAACTCGACCCCTAAATCCCTAAACCTTAAATCCCTAACTCTAACAT
66 AATCTAAACCCAAAACCCTAACTCGACCCCTAAATCCCTAAACCTTAAACCCCTAACTCTAACAC
* * * *
32606103 CTAACCCCTAACCCTAAACATTAAATCCCAACCCTTAAACCATAATCCCTAATTCATAATCCCTA
131 CTAACCCCTAACCCTAAACATTAAACCCCAAACCTTAAACCA-AACCCCTAATCCATAATCCCTA
* * *
32606168 AATTCATACTCCCTAAATCTTAAAATATGAACTCCTAAACTGGCCTTAAATCTTAAAATAATCAT
195 AATCCATACTCCCTAAACCTTAAAATATGAACTCCTAAACCGGCCTTAAATCTTAAAATAATCAT
*
32606233 ATACCCTAAACTAAAAACCCTAAACAA
260 ATACCCTAAACCAAAAACCCTAAACAA
32606260 ATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAA-AAAATAATT
1 ATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAACAAAATAATT
* * *
32606324 AATCTAAACCCAAAACCCTAACTCGACCCCTGAATCCCT-AACTTTTAACCCCTAACACGTCTAA
66 AATCTAAACCCAAAACCCTAACTCGACCCCTAAATCCCTAAACCTTAAACCCCT-A-AC-TCTAA
* * * *
32606388 CCCCTAACCCTTGAATCCCTTAACCCTCT-AACCCCTAAACCTTAAATACC-AACCCCTAATCCA
128 CACCTAACCCCT-AA-CCC-TAAACAT-TAAACCCC-AAACCTT-AA-ACCAAACCCCTAATCCA
32606451 TAATCCCTAAA-CCATACTCCCTAAACCTTAAAATATGAACTCCTAAACCGGCCTTAAATCTT-A
186 TAATCCCTAAATCCATACTCCCTAAACCTTAAAATATGAACTCCTAAACCGGCCTTAAATCTTAA
32606514 AATAAATCATATACCCTAAACCAAAAACCCTAAACAA
251 AAT-AATCATATACCCTAAACCAAAAACCCTAAACAA
*
32606551 ATTTATTATTATCTCTCTTACAATTAT
1 ATTTATTATTATCTCTTTTACAATTAT
32606578 TTTAAATAAT
Statistics
Matches: 285, Mismatches: 22, Indels: 18
0.88 0.07 0.06
Matches are distributed among these distances:
285 11 0.04
286 46 0.16
287 55 0.19
288 14 0.05
289 2 0.01
290 7 0.02
291 116 0.41
292 29 0.10
293 2 0.01
294 3 0.01
ACGTcount: A:0.41, C:0.27, G:0.02, T:0.30
Consensus pattern (286 bp):
ATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAACAAAATAATT
AATCTAAACCCAAAACCCTAACTCGACCCCTAAATCCCTAAACCTTAAACCCCTAACTCTAACAC
CTAACCCCTAACCCTAAACATTAAACCCCAAACCTTAAACCAAACCCCTAATCCATAATCCCTAA
ATCCATACTCCCTAAACCTTAAAATATGAACTCCTAAACCGGCCTTAAATCTTAAAATAATCATA
TACCCTAAACCAAAAACCCTAAACAA
Found at i:32607143 original size:227 final size:226
Alignment explanation
Indices: 32606725--32607280 Score: 880
Period size: 227 Copynumber: 2.5 Consensus size: 226
32606715 TAAAATATTT
** * * *
32606725 TTAGCGGCGCTTTCCGAAAAACGCCGCTAAATCCCCGAAAACTCAGAAAACGACGTCGTTGGACT
1 TTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCACGAAAGCTCAGAAAACGGCGTCGTTGG-CT
* ** * * *
32606790 GAGGTGATTTTGCGGCGCTTTCCCAAAAATGTCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTT
65 TAGGTTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCCT
* *
32606855 AAAAACGCCGCTAAATCCTCGAAAGCTCAGAAAACGGCGTCGTTGGCTTAGGTTTTTTTGCGGCG
130 AAAAACGCCGCTAAATCCTCGAAAGCTAACAAAACGGCGTCGTTGGCTTAGGTTTTTTTGCGGCG
32606920 CTTCCCCAAAAACGCCGCTAAAGCCCTGAGCA
195 CTTCCCCAAAAACGCCGCTAAAGCCCTGAGCA
*
32606952 TTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCTCGAAAGCTCAGAAAACGGCGTCGTTGGCTT
1 TTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCACGAAAGCTCAGAAAACGGCGTCGTTGGCTT
*
32607017 AGGTTTTTTTGCGGCGCTTCCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCCTA
66 AGGTTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCCTA
* *
32607082 AAAATGCTGCTAAATCCTCGAAAGCTAACAAAACGGCGTCGTTGGACTTAGGTTTTTTTGCGGCG
131 AAAACGCCGCTAAATCCTCGAAAGCTAACAAAACGGCGTCGTTGG-CTTAGGTTTTTTTGCGGCG
*
32607147 CTTCCTCAAAAACGCCGCTAAAGCCCTGAGCA
195 CTTCCCCAAAAACGCCGCTAAAGCCCTGAGCA
* * *
32607179 TTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCAACAAAAGCTCACAAAACGGCGTCGTTGGGCT
1 TTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCACGAAAGCTCAGAAAACGGCGTCGTT-GGCT
*
32607244 TAGG-TTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAA
65 TAGGTTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAA
32607281 TGCTTATTTT
Statistics
Matches: 304, Mismatches: 23, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
226 102 0.34
227 194 0.64
228 8 0.03
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (226 bp):
TTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCACGAAAGCTCAGAAAACGGCGTCGTTGGCTT
AGGTTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCCTA
AAAACGCCGCTAAATCCTCGAAAGCTAACAAAACGGCGTCGTTGGCTTAGGTTTTTTTGCGGCGC
TTCCCCAAAAACGCCGCTAAAGCCCTGAGCA
Found at i:32607191 original size:114 final size:113
Alignment explanation
Indices: 32606725--32607280 Score: 871
Period size: 113 Copynumber: 4.9 Consensus size: 113
32606715 TAAAATATTT
** * * *
32606725 TTAGCGGCGCTTTCCGAAAAACGCCGCTAAATCCCCGAAAACTCAGAAAACGACGTCGTTGGACT
1 TTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCTCGAAAGCTCAGAAAACGGCGTCGTTGG-CT
* ** * * *
32606790 GAGGTGATTTTGCGGCGCTTTCCCAAAAATGTCGCTAAAGCCCTGAGCA
65 TAGGTTTTTTTGCGGCGCTTCCCCAAAAACGCCGCTAAAGCCCTGAGCA
32606839 TTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCTCGAAAGCTCAGAAAACGGCGTCGTTGGCTT
1 TTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCTCGAAAGCTCAGAAAACGGCGTCGTTGGCTT
32606904 AGGTTTTTTTGCGGCGCTTCCCCAAAAACGCCGCTAAAGCCCTGAGCA
66 AGGTTTTTTTGCGGCGCTTCCCCAAAAACGCCGCTAAAGCCCTGAGCA
32606952 TTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCTCGAAAGCTCAGAAAACGGCGTCGTTGGCTT
1 TTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCTCGAAAGCTCAGAAAACGGCGTCGTTGGCTT
32607017 AGGTTTTTTTGCGGCGCTTCCCCAAAAACGCCGCTAAAGCCCTGAGCA
66 AGGTTTTTTTGCGGCGCTTCCCCAAAAACGCCGCTAAAGCCCTGAGCA
* * * * *
32607065 TTAGCGGCGCTTTCCTAAAAATGCTGCTAAATCCTCGAAAGCTAACAAAACGGCGTCGTTGGACT
1 TTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCTCGAAAGCTCAGAAAACGGCGTCGTTGG-CT
*
32607130 TAGGTTTTTTTGCGGCGCTTCCTCAAAAACGCCGCTAAAGCCCTGAGCA
65 TAGGTTTTTTTGCGGCGCTTCCCCAAAAACGCCGCTAAAGCCCTGAGCA
** * *
32607179 TTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCAACAAAAGCTCACAAAACGGCGTCGTTGGGCT
1 TTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCTCGAAAGCTCAGAAAACGGCGTCGTT-GGCT
* *
32607244 TAGG-TTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAA
65 TAGGTTTTTTTGCGGCGCTTCCCCAAAAACGCCGCTAA
32607281 TGCTTATTTT
Statistics
Matches: 415, Mismatches: 25, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
113 247 0.60
114 166 0.40
115 2 0.00
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (113 bp):
TTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCTCGAAAGCTCAGAAAACGGCGTCGTTGGCTT
AGGTTTTTTTGCGGCGCTTCCCCAAAAACGCCGCTAAAGCCCTGAGCA
Found at i:32610039 original size:27 final size:27
Alignment explanation
Indices: 32609965--32610028 Score: 94
Period size: 26 Copynumber: 2.4 Consensus size: 27
32609955 TGTCAAGAAG
* *
32609965 GAAAAGCCTTTGTGGAAAAATATGAAT
1 GAAAAGCCTTTGTGGAAAAATAGGAAA
*
32609992 G-AAAGCCTTTGTGGATAAATAGGAAA
1 GAAAAGCCTTTGTGGAAAAATAGGAAA
32610018 GAAAAGCCTTT
1 GAAAAGCCTTT
32610029 ATGGCGAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 23 0.70
27 10 0.30
ACGTcount: A:0.42, C:0.09, G:0.23, T:0.25
Consensus pattern (27 bp):
GAAAAGCCTTTGTGGAAAAATAGGAAA
Found at i:32610045 original size:27 final size:27
Alignment explanation
Indices: 32609965--32610052 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 27
32609955 TGTCAAGAAG
*
32609965 GAAAAGCCTTTGTGGAAAAATATGAAT
1 GAAAAGCCTTTGTGGAAAAATATGAAA
* *
32609992 G-AAAGCCTTTGTGGATAAATAGGAAA
1 GAAAAGCCTTTGTGGAAAAATATGAAA
* ** *
32610018 GAAAAGCCTTTATGGCGAAATATCAAA
1 GAAAAGCCTTTGTGGAAAAATATGAAA
*
32610045 GGAAAGCC
1 GAAAAGCC
32610053 CTTCTGGCAA
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 23 0.45
27 28 0.55
ACGTcount: A:0.43, C:0.11, G:0.24, T:0.22
Consensus pattern (27 bp):
GAAAAGCCTTTGTGGAAAAATATGAAA
Found at i:32614325 original size:27 final size:26
Alignment explanation
Indices: 32614294--32614471 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
32614284 TAAATTGTAC
32614294 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
32614321 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
32614347 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
32614375 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
32614403 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
32614430 GGCACTAAGTGTGCGAGTTGAATATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
32614457 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32614472 GGCTCAATAT
Statistics
Matches: 125, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 99 0.79
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:32614410 original size:82 final size:81
Alignment explanation
Indices: 32614295--32614450 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
32614285 AAATTGTACA
* * *
32614295 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
32614359 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32614376 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
32614441 TGCGAGTTGA
65 TGCGAATTGA
32614451 ATATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32614462 original size:82 final size:81
Alignment explanation
Indices: 32614291--32614471 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
32614281 GATTAAATTG
* * *
32614291 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
*
32614356 GTGTGCGAATTGACCA
66 GTGTGCGAATTGAACA
* * ** *
32614372 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* *
32614436 AAGTGTGCGAGTTGAATA
64 AAGTGTGCGAATTGAACA
* *
32614454 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32614472 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGAACA
Found at i:32614480 original size:27 final size:27
Alignment explanation
Indices: 32614376--32614482 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
32614366 TGACCATGCG
* * *
32614376 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * ** *
32614404 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
32614431 GCACTAAGTGTGCGAGTTGAATATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
32614458 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
32614483 CATTCGTGAA
Statistics
Matches: 65, Mismatches: 14, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
27 50 0.77
28 15 0.23
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:32626541 original size:17 final size:17
Alignment explanation
Indices: 32626508--32626545 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
32626498 CAGGTCCACA
*
32626508 ACCAATTTACTTAGCAT
1 ACCAATTTACATAGCAT
32626525 ACCAATTTACCAT-GCAT
1 ACCAATTTA-CATAGCAT
32626542 ACCA
1 ACCA
32626546 TCCATTAGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 17 0.89
18 2 0.11
ACGTcount: A:0.37, C:0.29, G:0.05, T:0.29
Consensus pattern (17 bp):
ACCAATTTACATAGCAT
Found at i:32628348 original size:15 final size:15
Alignment explanation
Indices: 32628305--32628352 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
32628295 TAGGGTTGTA
*
32628305 GTAAATAAAATATAT
1 GTAAGTAAAATATAT
*
32628320 ATAAGTAAATAATATAT
1 GTAAGT-AA-AATATAT
*
32628337 GTATGTAAAATATAT
1 GTAAGTAAAATATAT
32628352 G
1 G
32628353 CGATGTTCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
15 12 0.44
16 4 0.15
17 11 0.41
ACGTcount: A:0.54, C:0.00, G:0.10, T:0.35
Consensus pattern (15 bp):
GTAAGTAAAATATAT
Found at i:32629106 original size:16 final size:17
Alignment explanation
Indices: 32629074--32629112 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
32629064 GCTTGGGAAT
32629074 TTATTTTGGACTTTGGA
1 TTATTTTGGACTTTGGA
*
32629091 TTATTTT-GATTTTGGA
1 TTATTTTGGACTTTGGA
32629107 TT-TTTT
1 TTATTTT
32629113 ACATGATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 4 0.19
16 10 0.48
17 7 0.33
ACGTcount: A:0.15, C:0.03, G:0.18, T:0.64
Consensus pattern (17 bp):
TTATTTTGGACTTTGGA
Found at i:32633439 original size:22 final size:22
Alignment explanation
Indices: 32633411--32633455 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
32633401 ATTATGATGA
32633411 TTGATATG-ATGAGATTGATATT
1 TTGATATGTATGAGATT-ATATT
*
32633433 TTGATATGTATGTGATTATATT
1 TTGATATGTATGAGATTATATT
32633455 T
1 T
32633456 GTGTTGATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.29, C:0.00, G:0.20, T:0.51
Consensus pattern (22 bp):
TTGATATGTATGAGATTATATT
Found at i:32633664 original size:16 final size:17
Alignment explanation
Indices: 32633632--32633669 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
32633622 GCTTGGGATT
32633632 TTATTTTGGACTTTAGA
1 TTATTTTGGACTTTAGA
*
32633649 TTATTTT-GATTTTAGA
1 TTATTTTGGACTTTAGA
32633665 -TATTT
1 TTATTT
32633670 CTGCATGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 5 0.25
16 8 0.40
17 7 0.35
ACGTcount: A:0.24, C:0.03, G:0.13, T:0.61
Consensus pattern (17 bp):
TTATTTTGGACTTTAGA
Found at i:32634609 original size:15 final size:15
Alignment explanation
Indices: 32634589--32634617 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
32634579 TATGCATACA
32634589 AAATATAAAAGACAG
1 AAATATAAAAGACAG
32634604 AAATATAAAAGACA
1 AAATATAAAAGACA
32634618 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.69, C:0.07, G:0.10, T:0.14
Consensus pattern (15 bp):
AAATATAAAAGACAG
Found at i:32636710 original size:18 final size:18
Alignment explanation
Indices: 32636689--32636725 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
32636679 AAGACTAAAA
32636689 ATTAATGATAATCAAACT
1 ATTAATGATAATCAAACT
**
32636707 ATTAATGATGTTCAAACT
1 ATTAATGATAATCAAACT
32636725 A
1 A
32636726 AATAACTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.11, G:0.08, T:0.35
Consensus pattern (18 bp):
ATTAATGATAATCAAACT
Found at i:32641844 original size:24 final size:24
Alignment explanation
Indices: 32641814--32641861 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
32641804 GTAGCCTTTC
32641814 CCTACAAGTCTAGCTTTGTATGTT
1 CCTACAAGTCTAGCTTTGTATGTT
*
32641838 CCTACAAGTCTAGCTTTGTGTGTT
1 CCTACAAGTCTAGCTTTGTATGTT
32641862 TGTACTTTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.42
Consensus pattern (24 bp):
CCTACAAGTCTAGCTTTGTATGTT
Found at i:32644109 original size:19 final size:19
Alignment explanation
Indices: 32644085--32644122 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
32644075 CTCTTTGGCA
32644085 GTATTAAGCAAATATTTTT
1 GTATTAAGCAAATATTTTT
32644104 GTATTAAGCAAATATTTTT
1 GTATTAAGCAAATATTTTT
32644123 CATTTCAGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.11, T:0.47
Consensus pattern (19 bp):
GTATTAAGCAAATATTTTT
Found at i:32662114 original size:50 final size:51
Alignment explanation
Indices: 32662053--32662240 Score: 204
Period size: 51 Copynumber: 3.7 Consensus size: 51
32662043 TACCATTCGA
* **
32662053 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAA-CTTTCCAG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGATCAAATCCCTCCAG
* * *
32662103 TTCACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAATCCCTCTAG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGATCAAATCCCTCCAG
* * * * *
32662154 TACACATAGTAGTCTGCTCATAGTACTACACATGTGATCATTAT--CTACC-G
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGATCA-AATCCCT-CCAG
* *
32662204 ATACATGTAGTAGCCTGCACTTAGTACTACACACGTG
1 -TACACGTAGTAGCCTGCACATAGTACTACACACGTG
32662241 TCCGCAAACA
Statistics
Matches: 114, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
50 42 0.37
51 70 0.61
52 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (51 bp):
TACACGTAGTAGCCTGCACATAGTACTACACACGTGATCAAATCCCTCCAG
Found at i:32672841 original size:12 final size:12
Alignment explanation
Indices: 32672824--32672880 Score: 55
Period size: 12 Copynumber: 4.8 Consensus size: 12
32672814 TCACTCTCAT
32672824 TTTCTTTTTCAA
1 TTTCTTTTTCAA
32672836 TTTCTTGTTTTC--
1 TTTC-T-TTTTCAA
* * *
32672848 TTTCATGTTCAT
1 TTTCTTTTTCAA
32672860 TTTCTTTTTCAA
1 TTTCTTTTTCAA
32672872 TTTCTTTTT
1 TTTCTTTTT
32672881 GTTTTTATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
10 4 0.11
12 26 0.72
13 1 0.03
14 5 0.14
ACGTcount: A:0.11, C:0.16, G:0.04, T:0.70
Consensus pattern (12 bp):
TTTCTTTTTCAA
Found at i:32673923 original size:12 final size:12
Alignment explanation
Indices: 32673906--32673937 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
32673896 ATACAACCAT
32673906 TTTTTTTTGAAC
1 TTTTTTTTGAAC
32673918 TTTTTTTTGAAC
1 TTTTTTTTGAAC
32673930 TTTTTTTT
1 TTTTTTTT
32673938 CAATTCACGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.12, C:0.06, G:0.06, T:0.75
Consensus pattern (12 bp):
TTTTTTTTGAAC
Found at i:32675935 original size:18 final size:16
Alignment explanation
Indices: 32675896--32675938 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 16
32675886 ACATGATTTG
*
32675896 TTTTCAAAAGTTATTC
1 TTTTCAAAAGTTATTA
32675912 TCTTTCAAAACGTTATTAA
1 T-TTTCAAAA-GTTATT-A
32675931 TTTTCAAA
1 TTTTCAAA
32675939 GCGTCACTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 1 0.04
17 8 0.35
18 13 0.57
19 1 0.04
ACGTcount: A:0.35, C:0.14, G:0.05, T:0.47
Consensus pattern (16 bp):
TTTTCAAAAGTTATTA
Found at i:32676425 original size:18 final size:19
Alignment explanation
Indices: 32676402--32676440 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
32676392 CTTGGCCCAT
* *
32676402 TACAGTATC-GATATTCAG
1 TACAGTAACTGATATACAG
32676420 TACAGTAACTGATATACAG
1 TACAGTAACTGATATACAG
32676439 TA
1 TA
32676441 TCAAATCCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (19 bp):
TACAGTAACTGATATACAG
Found at i:32678591 original size:15 final size:15
Alignment explanation
Indices: 32678571--32678600 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
32678561 CTATGCATGT
*
32678571 AAAATATAAAAGACA
1 AAAATACAAAAGACA
32678586 AAAATACAAAAGACA
1 AAAATACAAAAGACA
32678601 TAATACTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.73, C:0.10, G:0.07, T:0.10
Consensus pattern (15 bp):
AAAATACAAAAGACA
Found at i:32682249 original size:172 final size:173
Alignment explanation
Indices: 32681956--32682300 Score: 656
Period size: 172 Copynumber: 2.0 Consensus size: 173
32681946 TATAAACTCA
*
32681956 TCAGTATTAGCAAGATGAATTGTCTTAATTGCATGATCTGAAATTAATTATTTAAACAAATAATC
1 TCAGTATTAGCAAGATGAATTGTCTTAATTCCATGATCTGAAATTAATTATTTAAACAAATAATC
*
32682021 TTGCAAACGACAGGTTGCAAGTTGGTAACACATATGTGATTATTTTGTAGATGTATCTACCAAAA
66 TTGCAAACGACAGGTTGCAAGTTGGTAACACATATGTGATTATTTTGTAAATGTATCTACCAAAA
32682086 TCATATAATATCAAAATCATCCACATTTTGGATGAATGAGCCC
131 TCATATAATATCAAAATCATCCACATTTTGGATGAATGAGCCC
*
32682129 TCAG-ATTAGCAAGATGAATTGTCTTAATTCCATGATCTGAAATTAATTATTTAAATAAATAATC
1 TCAGTATTAGCAAGATGAATTGTCTTAATTCCATGATCTGAAATTAATTATTTAAACAAATAATC
32682193 TTGCAAACGACAGGTTGCAAGTTGGTAACACATATGTGATTATTTTGTAAATGTATCTACCAAAA
66 TTGCAAACGACAGGTTGCAAGTTGGTAACACATATGTGATTATTTTGTAAATGTATCTACCAAAA
32682258 TCATATAATATCAAAATCATCCACATTTTGGATGAATGAGCCC
131 TCATATAATATCAAAATCATCCACATTTTGGATGAATGAGCCC
32682301 ATATTCATTT
Statistics
Matches: 169, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
172 165 0.98
173 4 0.02
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.34
Consensus pattern (173 bp):
TCAGTATTAGCAAGATGAATTGTCTTAATTCCATGATCTGAAATTAATTATTTAAACAAATAATC
TTGCAAACGACAGGTTGCAAGTTGGTAACACATATGTGATTATTTTGTAAATGTATCTACCAAAA
TCATATAATATCAAAATCATCCACATTTTGGATGAATGAGCCC
Found at i:32683785 original size:15 final size:16
Alignment explanation
Indices: 32683755--32683788 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 16
32683745 AGCATATTTA
32683755 ATAAAAATAATTTAATC
1 ATAAAAAT-ATTTAATC
32683772 ATAAAAAT-TTTAATC
1 ATAAAAATATTTAATC
32683787 AT
1 AT
32683789 CCAAATATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.53
17 8 0.47
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
ATAAAAATATTTAATC
Found at i:32684803 original size:17 final size:18
Alignment explanation
Indices: 32684775--32684816 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
32684765 TGCCAAGTCA
32684775 ATAAATAATTT-AAATTTT
1 ATAAA-AATTTAAAATTTT
32684793 ATAAAAATTTAAAATTTT
1 ATAAAAATTTAAAATTTT
32684811 -TAAAAA
1 ATAAAAA
32684817 AAAATTAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.48
18 12 0.52
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
ATAAAAATTTAAAATTTT
Found at i:32690768 original size:31 final size:31
Alignment explanation
Indices: 32690733--32690813 Score: 117
Period size: 31 Copynumber: 2.6 Consensus size: 31
32690723 GTATATGTTT
* *
32690733 TATACATTGTCGAATTTGATTTGTTTATAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
*
32690764 TATACATTGCCGAATTTGATTTGTTTATAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* *
32690795 TATACACTACCGAATTTGA
1 TATACATTGCCGAATTTGA
32690814 ATTGCCGAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.31, C:0.11, G:0.15, T:0.43
Consensus pattern (31 bp):
TATACATTGCCGAATTTGATTTGTATATAGA
Found at i:32690823 original size:14 final size:14
Alignment explanation
Indices: 32690804--32690831 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32690794 ATATACACTA
32690804 CCGAATTTGAATTG
1 CCGAATTTGAATTG
32690818 CCGAATTTGAATTG
1 CCGAATTTGAATTG
32690832 TTTATAGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (14 bp):
CCGAATTTGAATTG
Found at i:32690833 original size:45 final size:45
Alignment explanation
Indices: 32690769--32690862 Score: 161
Period size: 45 Copynumber: 2.1 Consensus size: 45
32690759 ATAGATATAC
*
32690769 ATTGCCGAATTTGATTTGTTTATAGATATACACTACCGAATTTGA
1 ATTGCCGAATTTGAATTGTTTATAGATATACACTACCGAATTTGA
* *
32690814 ATTGCCGAATTTGAATTGTTTATAGATATACATTGCCGAATTTGA
1 ATTGCCGAATTTGAATTGTTTATAGATATACACTACCGAATTTGA
32690859 ATTG
1 ATTG
32690863 TTTATAGATA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.40
Consensus pattern (45 bp):
ATTGCCGAATTTGAATTGTTTATAGATATACACTACCGAATTTGA
Found at i:32690852 original size:31 final size:31
Alignment explanation
Indices: 32690814--32691170 Score: 452
Period size: 31 Copynumber: 11.6 Consensus size: 31
32690804 CCGAATTTGA
* *
32690814 ATTGCCGAATTTGAATTGTTTATAGATATAC
1 ATTGCCGAATTTGATTTGTATATAGATATAC
* *
32690845 ATTGCCGAATTTGAATTGTTTATAGATATAC
1 ATTGCCGAATTTGATTTGTATATAGATATAC
32690876 ATTGCCGAA-TTGATTTGTATATAGATATAC
1 ATTGCCGAATTTGATTTGTATATAGATATAC
* * * *
32690906 ACTGTCGAATTTGATTTGTATATGGTTATAC
1 ATTGCCGAATTTGATTTGTATATAGATATAC
* *
32690937 ATTGCCGAATTTGATTTGCATATGGATATAC
1 ATTGCCGAATTTGATTTGTATATAGATATAC
32690968 ATTGCCGAA-TTGATTTGTATATAGATATAC
1 ATTGCCGAATTTGATTTGTATATAGATATAC
*
32690998 ATTGCCGAATTTGATTTGTATATAGATAAAC
1 ATTGCCGAATTTGATTTGTATATAGATATAC
* * *
32691029 ATTGCCGAATTTTATTTGTATATGGTTATAC
1 ATTGCCGAATTTGATTTGTATATAGATATAC
* * * * *
32691060 ATTGCCAAATTTGGTTTTTATATGGATATTC
1 ATTGCCGAATTTGATTTGTATATAGATATAC
* *
32691091 ATTGCCG-AGTTGATTTTTATATAGATATAC
1 ATTGCCGAATTTGATTTGTATATAGATATAC
* * *
32691121 ATTGTCGAATTTGATTTGTATATGGATATATAT
1 ATTGCCGAATTTGATTTGTATAT--AGATATAC
32691154 ATTGCCGAA-TTGATTTG
1 ATTGCCGAATTTGATTTG
32691171 AGCATTAGAT
Statistics
Matches: 287, Mismatches: 34, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
30 79 0.28
31 186 0.65
32 8 0.03
33 14 0.05
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.43
Consensus pattern (31 bp):
ATTGCCGAATTTGATTTGTATATAGATATAC
Found at i:32690869 original size:76 final size:76
Alignment explanation
Indices: 32690738--32690886 Score: 253
Period size: 76 Copynumber: 2.0 Consensus size: 76
32690728 TGTTTTATAC
* * *
32690738 ATTGTCGAATTTGATTTGTTTATAGATATACATTGCCGAATTTGATTTGTTTATAGATATACACT
1 ATTGCCGAATTTGAATTGTTTATAGATATACATTGCCGAATTTGAATTGTTTATAGATATACACT
32690803 ACCGAATTTGA
66 ACCGAATTTGA
*
32690814 ATTGCCGAATTTGAATTGTTTATAGATATACATTGCCGAATTTGAATTGTTTATAGATATACATT
1 ATTGCCGAATTTGAATTGTTTATAGATATACATTGCCGAATTTGAATTGTTTATAGATATACACT
*
32690879 GCCGAATT
66 ACCGAATT
32690887 GATTTGTATA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
76 68 1.00
ACGTcount: A:0.31, C:0.11, G:0.16, T:0.42
Consensus pattern (76 bp):
ATTGCCGAATTTGAATTGTTTATAGATATACATTGCCGAATTTGAATTGTTTATAGATATACACT
ACCGAATTTGA
Found at i:32690976 original size:92 final size:92
Alignment explanation
Indices: 32690814--32691170 Score: 482
Period size: 92 Copynumber: 3.9 Consensus size: 92
32690804 CCGAATTTGA
* * * * *
32690814 ATTGCCGAATTTGAATTGTTTATAGATATACATTGCCGAATTTGAATTGTTTATAGATATACATT
1 ATTGCCGAATTTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATGGATATACATT
32690879 GCCGAATTGATTTGTATATAGATATAC
66 GCCGAATTGATTTGTATATAGATATAC
* * * * *
32690906 ACTGTCGAATTTGATTTGTATATGGTTATACATTGCCGAATTTGATTTGCATATGGATATACATT
1 ATTGCCGAATTTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATGGATATACATT
32690971 GCCGAATTGATTTGTATATAGATATAC
66 GCCGAATTGATTTGTATATAGATATAC
* * *
32690998 ATTGCCGAATTTGATTTGTATATAGATAAACATTGCCGAATTTTATTTGTATATGGTTATACATT
1 ATTGCCGAATTTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATGGATATACATT
* * * * *
32691063 GCCAAATTTGGTTTTTATATGGATATTC
66 GCCGAA-TTGATTTGTATATAGATATAC
* * * *
32691091 ATTGCCG-AGTTGATTTTTATATAGATATACATTGTCGAATTTGATTTGTATATGGATATATATA
1 ATTGCCGAATTTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATGG--ATATACA
32691155 TTGCCGAATTGATTTG
64 TTGCCGAATTGATTTG
32691171 AGCATTAGAT
Statistics
Matches: 229, Mismatches: 33, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
92 187 0.82
93 30 0.13
94 12 0.05
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.43
Consensus pattern (92 bp):
ATTGCCGAATTTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATGGATATACATT
GCCGAATTGATTTGTATATAGATATAC
Found at i:32691038 original size:123 final size:123
Alignment explanation
Indices: 32690814--32691170 Score: 502
Period size: 123 Copynumber: 2.9 Consensus size: 123
32690804 CCGAATTTGA
* * * * *
32690814 ATTGCCGAATTTGAATTGTTTATAGATATACATTGCCGAATTTGAATTGTTTATAGATATACATT
1 ATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAA-TTGATTTGTATATAGATATACATT
* * *
32690879 GCCGAA-TTGATTTGTATATAGATATACACTGTCGAATTTGATTTGTATATGGTTATAC
65 GCCGAATTTGATTTGTATATAGATAAACATTGCCGAATTTGATTTGTATATGGTTATAC
*
32690937 ATTGCCGAATTTGATTTGCATATGGATATACATTGCCGAATTGATTTGTATATAGATATACATTG
1 ATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAATTGATTTGTATATAGATATACATTG
*
32691002 CCGAATTTGATTTGTATATAGATAAACATTGCCGAATTTTATTTGTATATGGTTATAC
66 CCGAATTTGATTTGTATATAGATAAACATTGCCGAATTTGATTTGTATATGGTTATAC
* * * * * *
32691060 ATTGCCAAATTTGGTTTTTATATGGATATTCATTGCCGAGTTGATTTTTATATAGATATACATTG
1 ATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAATTGATTTGTATATAGATATACATTG
* * *
32691125 TCGAATTTGATTTGTATATGGATATATATATTGCCGAA-TTGATTTG
66 CCGAATTTGATTTGTATATAGATA-A-ACATTGCCGAATTTGATTTG
32691171 AGCATTAGAT
Statistics
Matches: 210, Mismatches: 21, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
122 28 0.13
123 164 0.78
124 8 0.04
125 10 0.05
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.43
Consensus pattern (123 bp):
ATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAATTGATTTGTATATAGATATACATTG
CCGAATTTGATTTGTATATAGATAAACATTGCCGAATTTGATTTGTATATGGTTATAC
Found at i:32695479 original size:20 final size:20
Alignment explanation
Indices: 32695427--32695471 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
32695417 CTAAAATAAA
*
32695427 CTAAAAACGAGCTCATTGAG
1 CTAAGAACGAGCTCATTGAG
32695447 CTAAGAACGAGCTCATTGAG
1 CTAAGAACGAGCTCATTGAG
32695467 CTAAG
1 CTAAG
32695472 GTTGAGCTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (20 bp):
CTAAGAACGAGCTCATTGAG
Found at i:32696431 original size:13 final size:12
Alignment explanation
Indices: 32696411--32696457 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 12
32696401 TAAAGCATCT
32696411 TTTCTTTTTCTC
1 TTTCTTTTTCTC
*
32696423 TTTCATTTT-TC
1 TTTCTTTTTCTC
** *
32696434 TTTCACTTTCTT
1 TTTCTTTTTCTC
32696446 TTTCTTTTTCTC
1 TTTCTTTTTCTC
32696458 CACTCTTGTT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
11 10 0.36
12 18 0.64
ACGTcount: A:0.04, C:0.23, G:0.00, T:0.72
Consensus pattern (12 bp):
TTTCTTTTTCTC
Found at i:32696442 original size:17 final size:16
Alignment explanation
Indices: 32696417--32696452 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
32696407 ATCTTTTCTT
*
32696417 TTTCTCTTTCATTTTTC
1 TTTCACTTTC-TTTTTC
32696434 TTTCACTTTCTTTTTC
1 TTTCACTTTCTTTTTC
32696450 TTT
1 TTT
32696453 TTCTCCACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTCACTTTCTTTTTC
Found at i:32700089 original size:20 final size:20
Alignment explanation
Indices: 32700037--32700081 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
32700027 CTAAAATAAA
* *
32700037 CTAAAAACGAGCTCATTGTG
1 CTAAGAACGAGCTCATTGAG
32700057 CTAAGAACGAGCTCATTGAG
1 CTAAGAACGAGCTCATTGAG
32700077 CTAAG
1 CTAAG
32700082 GTTGAGCTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (20 bp):
CTAAGAACGAGCTCATTGAG
Found at i:32700533 original size:27 final size:27
Alignment explanation
Indices: 32700489--32700607 Score: 168
Period size: 27 Copynumber: 4.4 Consensus size: 27
32700479 CTCTAAAATA
*
32700489 TTATAAAATGACTGTTATG-CCCTCATG
1 TTATAAAATGACTATTATGCCCCT-ATG
** *
32700516 TGGTAAAAGGACTATTATGCCCCTATG
1 TTATAAAATGACTATTATGCCCCTATG
**
32700543 TTATAAAATGACGGTTATGCCCCTATG
1 TTATAAAATGACTATTATGCCCCTATG
32700570 TTATAAAATGACTATTATGCCCCTATG
1 TTATAAAATGACTATTATGCCCCTATG
32700597 TTATAAAATGA
1 TTATAAAATGA
32700608 ATGTATACTT
Statistics
Matches: 80, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 76 0.95
28 4 0.05
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (27 bp):
TTATAAAATGACTATTATGCCCCTATG
Found at i:32700548 original size:54 final size:54
Alignment explanation
Indices: 32700489--32700607 Score: 186
Period size: 54 Copynumber: 2.2 Consensus size: 54
32700479 CTCTAAAATA
* *
32700489 TTATAAAATGACTGTTATG-CCCTCATGTGGTAAAAGGACTATTATGCCCCTATG
1 TTATAAAATGACGGTTATGCCCCT-ATGTGATAAAAGGACTATTATGCCCCTATG
* *
32700543 TTATAAAATGACGGTTATGCCCCTATGTTATAAAATGACTATTATGCCCCTATG
1 TTATAAAATGACGGTTATGCCCCTATGTGATAAAAGGACTATTATGCCCCTATG
32700597 TTATAAAATGA
1 TTATAAAATGA
32700608 ATGTATACTT
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
54 56 0.93
55 4 0.07
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (54 bp):
TTATAAAATGACGGTTATGCCCCTATGTGATAAAAGGACTATTATGCCCCTATG
Found at i:32703481 original size:76 final size:76
Alignment explanation
Indices: 32703355--32703622 Score: 536
Period size: 76 Copynumber: 3.5 Consensus size: 76
32703345 TAGTCCTAGG
32703355 GGCATTCTTACCTAATCTATATGACATGCTTCCAATATATGCATGGCATGCTATGGCAATTTTAT
1 GGCATTCTTACCTAATCTATATGACATGCTTCCAATATATGCATGGCATGCTATGGCAATTTTAT
32703420 AATATGGGCGT
66 AATATGGGCGT
32703431 GGCATTCTTACCTAATCTATATGACATGCTTCCAATATATGCATGGCATGCTATGGCAATTTTAT
1 GGCATTCTTACCTAATCTATATGACATGCTTCCAATATATGCATGGCATGCTATGGCAATTTTAT
32703496 AATATGGGCGT
66 AATATGGGCGT
32703507 GGCATTCTTACCTAATCTATATGACATGCTTCCAATATATGCATGGCATGCTATGGCAATTTTAT
1 GGCATTCTTACCTAATCTATATGACATGCTTCCAATATATGCATGGCATGCTATGGCAATTTTAT
32703572 AATATGGGCGT
66 AATATGGGCGT
32703583 GGCATTCTTACCTAATCTATATGACATGCTTCCAATATAT
1 GGCATTCTTACCTAATCTATATGACATGCTTCCAATATAT
32703623 CAATCAATCT
Statistics
Matches: 192, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 192 1.00
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (76 bp):
GGCATTCTTACCTAATCTATATGACATGCTTCCAATATATGCATGGCATGCTATGGCAATTTTAT
AATATGGGCGT
Found at i:32704987 original size:20 final size:20
Alignment explanation
Indices: 32704962--32705000 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
32704952 CATTAAATTT
32704962 AATTTAATATTAAAATAATC
1 AATTTAATATTAAAATAATC
*
32704982 AATTTAATATTAAATTAAT
1 AATTTAATATTAAAATAAT
32705001 AAAATACTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (20 bp):
AATTTAATATTAAAATAATC
Found at i:32704994 original size:37 final size:35
Alignment explanation
Indices: 32704953--32705059 Score: 92
Period size: 37 Copynumber: 2.9 Consensus size: 35
32704943 GTAGATAAAC
32704953 ATTAAATTTAATTTAATATTAAAATAATCAATTTAAT
1 ATTAAATTTAATTTAATATTAAAATAAT--ATTTAAT
** * *
32704990 ATTAAATTAATAAAATACTATTAAGATAAGTATTTAAT
1 ATTAAATT--TAATTTAATATTAAAATAA-TATTTAAT
32705028 -TT-AATTTAATATTAAACTATTAAAATAATATT
1 ATTAAATTTAAT-TT-AA-TATTAAAATAATATT
32705060 ATTTTTGGAA
Statistics
Matches: 56, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
34 3 0.05
35 1 0.02
36 9 0.16
37 20 0.36
38 7 0.12
39 15 0.27
40 1 0.02
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (35 bp):
ATTAAATTTAATTTAATATTAAAATAATATTTAAT
Found at i:32718832 original size:18 final size:18
Alignment explanation
Indices: 32718809--32718848 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
32718799 GTTTCCCACG
*
32718809 TTAGGATTTTTAGTGTTT
1 TTAGGATTTTTAGGGTTT
32718827 TTAGGATTTTTAGGGTTT
1 TTAGGATTTTTAGGGTTT
32718845 TTAG
1 TTAG
32718849 AGAAAAAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.17, C:0.00, G:0.25, T:0.57
Consensus pattern (18 bp):
TTAGGATTTTTAGGGTTT
Found at i:32718837 original size:10 final size:9
Alignment explanation
Indices: 32718809--32718848 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
32718799 GTTTCCCACG
32718809 TTAGGATTT
1 TTAGGATTT
32718818 TTAGTG-TTT
1 TTAG-GATTT
32718827 TTAGGATTT
1 TTAGGATTT
*
32718836 TTAGGGTTT
1 TTAGGATTT
32718845 TTAG
1 TTAG
32718849 AGAAAAAAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
8 1 0.04
9 26 0.93
10 1 0.04
ACGTcount: A:0.17, C:0.00, G:0.25, T:0.57
Consensus pattern (9 bp):
TTAGGATTT
Found at i:32719269 original size:127 final size:126
Alignment explanation
Indices: 32719043--32719389 Score: 504
Period size: 127 Copynumber: 2.8 Consensus size: 126
32719033 TGGAAAGTAA
* * * ** *
32719043 TTCTGAGAAAATAGTTTAAAA-AACGCTTCAAGCCGGATTTTTTATGAGAAGAATTTTTGAAATC
1 TTCTGAGCAAATAGTATAAAATAACGCTTCAAGCAGGATGCTTTATGAGAAGAATTTGTGAAATC
* * *
32719107 GCGCCCTCGTGGACGCGCTTTTGCTACAGTTGGTCCTGGAGGAAATAATTTCGAGTTGACGT
66 GCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGA-AAAATAATTTCGACTTGACGT
*
32719169 TTCTGAGCAAATAGTATAAAATAACGCTGCAAGCAGGATGCTATT-TGAGAAGAATTTGTGAAAT
1 TTCTGAGCAAATAGTATAAAATAACGCTTCAAGCAGGATGCT-TTATGAGAAGAATTTGTGAAAT
*
32719233 CGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAAAATAATTTTGACTTGACGT
65 CGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAAAATAATTTCGACTTGACGT
* * * *
32719295 TTCTGAGCTAACAGTATAAAAT--CGCTTCTAGCAGGATGCTTTATGAGAGGAATTTGTGAAATC
1 TTCTGAGCAAATAGTATAAAATAACGCTTCAAGCAGGATGCTTTATGAGAAGAATTTGTGAAATC
*
32719358 GCGCCCACGTGGACGCGCTTTTGCTACAGTAG
66 GCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
32719390 CCTGTTTGGG
Statistics
Matches: 201, Mismatches: 17, Indels: 8
0.89 0.08 0.04
Matches are distributed among these distances:
123 2 0.01
124 66 0.33
126 57 0.28
127 74 0.37
128 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (126 bp):
TTCTGAGCAAATAGTATAAAATAACGCTTCAAGCAGGATGCTTTATGAGAAGAATTTGTGAAATC
GCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAAAATAATTTCGACTTGACGT
Found at i:32724346 original size:15 final size:14
Alignment explanation
Indices: 32724326--32724391 Score: 96
Period size: 14 Copynumber: 4.5 Consensus size: 14
32724316 TAGCTTCTTC
32724326 TTTTTTTCACGAAATT
1 TTTTTTTCAC-AAA-T
32724342 TTTTTTTCACAAAT
1 TTTTTTTCACAAAT
*
32724356 TTTTTTTCACGAATT
1 TTTTTTTCAC-AAAT
32724371 TTTTTTTCACAAAT
1 TTTTTTTCACAAAT
32724385 TTTTTTT
1 TTTTTTT
32724392 TCAACTTGAT
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
14 21 0.45
15 16 0.34
16 10 0.21
ACGTcount: A:0.23, C:0.12, G:0.03, T:0.62
Consensus pattern (14 bp):
TTTTTTTCACAAAT
Found at i:32724370 original size:29 final size:30
Alignment explanation
Indices: 32724326--32724391 Score: 125
Period size: 29 Copynumber: 2.2 Consensus size: 30
32724316 TAGCTTCTTC
32724326 TTTTTTTCACGAAATTTTTTTTTCACAAAT
1 TTTTTTTCACGAAATTTTTTTTTCACAAAT
32724356 TTTTTTTCACG-AATTTTTTTTTCACAAAT
1 TTTTTTTCACGAAATTTTTTTTTCACAAAT
32724385 TTTTTTT
1 TTTTTTT
32724392 TCAACTTGAT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 25 0.69
30 11 0.31
ACGTcount: A:0.23, C:0.12, G:0.03, T:0.62
Consensus pattern (30 bp):
TTTTTTTCACGAAATTTTTTTTTCACAAAT
Found at i:32724392 original size:15 final size:15
Alignment explanation
Indices: 32724326--32724394 Score: 113
Period size: 15 Copynumber: 4.6 Consensus size: 15
32724316 TAGCTTCTTC
32724326 TTTTTTTCACGAAATT
1 TTTTTTTCAC-AAATT
32724342 TTTTTTTCACAAA-T
1 TTTTTTTCACAAATT
*
32724356 TTTTTTTCACGAATT
1 TTTTTTTCACAAATT
32724371 TTTTTTTCACAAATT
1 TTTTTTTCACAAATT
32724386 TTTTTTTCA
1 TTTTTTTCA
32724395 ACTTGATATC
Statistics
Matches: 50, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
14 13 0.26
15 27 0.54
16 10 0.20
ACGTcount: A:0.23, C:0.13, G:0.03, T:0.61
Consensus pattern (15 bp):
TTTTTTTCACAAATT
Found at i:32724472 original size:13 final size:12
Alignment explanation
Indices: 32724432--32724481 Score: 73
Period size: 12 Copynumber: 4.2 Consensus size: 12
32724422 ATGGAAACCA
32724432 AATTTTTTTTTG
1 AATTTTTTTTTG
*
32724444 ATTTTTTTTTTG
1 AATTTTTTTTTG
32724456 AATTTTTTTTTG
1 AATTTTTTTTTG
* *
32724468 AAATTGTTTTTG
1 AATTTTTTTTTG
32724480 AA
1 AA
32724482 GAAACTACTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.20, C:0.00, G:0.10, T:0.70
Consensus pattern (12 bp):
AATTTTTTTTTG
Found at i:32726372 original size:18 final size:18
Alignment explanation
Indices: 32726351--32726390 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
32726341 GATTGAGAGT
* *
32726351 GAAAACAAATGTGAAACA
1 GAAAACAAAAGTGAAAAA
*
32726369 GAAAAGAAAAGTGAAAAA
1 GAAAACAAAAGTGAAAAA
32726387 GAAA
1 GAAA
32726391 TTGAAGAAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.68, C:0.05, G:0.20, T:0.07
Consensus pattern (18 bp):
GAAAACAAAAGTGAAAAA
Found at i:32729539 original size:24 final size:24
Alignment explanation
Indices: 32729507--32729553 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
32729497 TCTATGGCTG
*
32729507 AATTAACCTTAATGAAATGAAATA
1 AATTAACCTTAACGAAATGAAATA
32729531 AATTAACCTTAACGAAATGAAAT
1 AATTAACCTTAACGAAATGAAAT
32729554 GCGAACTTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.53, C:0.11, G:0.09, T:0.28
Consensus pattern (24 bp):
AATTAACCTTAACGAAATGAAATA
Found at i:32736608 original size:30 final size:30
Alignment explanation
Indices: 32736574--32736670 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
32736564 AGCTCACTCC
32736574 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
32736604 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
32736634 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
32736664 TAGCTCA
1 TAGCTCA
32736671 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:32738964 original size:37 final size:37
Alignment explanation
Indices: 32738913--32738983 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
32738903 CATTCTTGTA
32738913 AAGAGAAAACAAAGAAAA-GAAAAGAAAAAGAAAAAGC
1 AAGAGAAAACAAAGAAAATG-AAAGAAAAAGAAAAAGC
*
32738950 AAGAGAAGAA-AAAGAAAATGAAATAAAAAGAAAA
1 AAGAGAA-AACAAAGAAAATGAAAGAAAAAGAAAA
32738984 GAGAGGCAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
37 28 0.90
38 3 0.10
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (37 bp):
AAGAGAAAACAAAGAAAATGAAAGAAAAAGAAAAAGC
Found at i:32738983 original size:6 final size:6
Alignment explanation
Indices: 32738923--32738972 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
32738913 AAGAGAAAAC
*
32738923 AAAG-A AAAG-A AAAGAA AAAGAA AAAGCAA GAGAAGAA AAAGAA AATGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAG-AA -A-AAGAA AAAGAA AAAGAA
32738972 A
1 A
32738973 TAAAAAGAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
5 9 0.22
6 22 0.55
7 3 0.08
8 3 0.08
9 3 0.08
ACGTcount: A:0.76, C:0.02, G:0.20, T:0.02
Consensus pattern (6 bp):
AAAGAA
Found at i:32746048 original size:48 final size:47
Alignment explanation
Indices: 32745965--32746124 Score: 194
Period size: 48 Copynumber: 3.3 Consensus size: 47
32745955 AAGCTATTTA
* ** *
32745965 TCGTATAGGTTTAACCTTGACAAGTAACCAAGCACTATTATTCATTAT
1 TCGTGTAGGTTTAACCTAAACAGGT-ACCAAGCACTATTATTCATTAT
* *
32746013 TTGTGTAGGTTTAACCTAAACAGGTACCTAGGCACTATTATTCATTAT
1 TCGTGTAGGTTTAACCTAAACAGGTACC-AAGCACTATTATTCATTAT
* * **
32746061 TCGTGTAGGTTTAACCCAAATGAGAAACCAAGCACTATTATTCATTAT
1 TCGTGTAGGTTTAACCTAAA-CAGGTACCAAGCACTATTATTCATTAT
*
32746109 TCATGTAGGTTTAACC
1 TCGTGTAGGTTTAACC
32746125 CAAATGAGTA
Statistics
Matches: 97, Mismatches: 13, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
47 3 0.03
48 89 0.92
49 5 0.05
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (47 bp):
TCGTGTAGGTTTAACCTAAACAGGTACCAAGCACTATTATTCATTAT
Found at i:32746125 original size:48 final size:48
Alignment explanation
Indices: 32745990--32746138 Score: 210
Period size: 48 Copynumber: 3.1 Consensus size: 48
32745980 CTTGACAAGT
* * * *
32745990 AACCAAGCACTATTATTCATTATTTGTGTAGGTTTAACCTAAA-CAGG
1 AACCAAGCACTATTATTCATTATTCGTGTAGGTTTAACCCAAATGAGA
* *
32746037 TACCTAGGCACTATTATTCATTATTCGTGTAGGTTTAACCCAAATGAGA
1 AACC-AAGCACTATTATTCATTATTCGTGTAGGTTTAACCCAAATGAGA
* *
32746086 AACCAAGCACTATTATTCATTATTCATGTAGGTTTAACCCAAATGAGT
1 AACCAAGCACTATTATTCATTATTCGTGTAGGTTTAACCCAAATGAGA
32746134 AACCA
1 AACCA
32746139 GACATTATTT
Statistics
Matches: 90, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
47 3 0.03
48 82 0.91
49 5 0.06
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33
Consensus pattern (48 bp):
AACCAAGCACTATTATTCATTATTCGTGTAGGTTTAACCCAAATGAGA
Found at i:32746951 original size:17 final size:17
Alignment explanation
Indices: 32746929--32746966 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
32746919 TTAAAAGTTA
32746929 GTTA-TTTATTTTTAATT
1 GTTATTTTA-TTTTAATT
32746946 GTTATTTTATTTTAATT
1 GTTATTTTATTTTAATT
32746963 -TTAT
1 GTTAT
32746967 AAAACTAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 4 0.20
17 12 0.60
18 4 0.20
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (17 bp):
GTTATTTTATTTTAATT
Found at i:32754435 original size:23 final size:23
Alignment explanation
Indices: 32754385--32754435 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
32754375 TTAATTTTCC
* *
32754385 ATTTAAATTTAGTTGGTTTGTTT
1 ATTTAAATTTAGTTGGTTGGTTG
**
32754408 ATTTAAATTTTTTTGGTTGGTTG
1 ATTTAAATTTAGTTGGTTGGTTG
*
32754431 GTTTA
1 ATTTA
32754436 TTACTTGTGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.61
Consensus pattern (23 bp):
ATTTAAATTTAGTTGGTTGGTTG
Found at i:32755845 original size:20 final size:20
Alignment explanation
Indices: 32755802--32755845 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
32755792 CAATTTTTAA
*
32755802 AAAAATTATTAAAATTACAT
1 AAAAATTATTAAAATTACAG
*
32755822 AAAAATTATGTAATATT-CAG
1 AAAAATTAT-TAAAATTACAG
32755842 AAAA
1 AAAA
32755846 CATTGTAACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.32
Consensus pattern (20 bp):
AAAAATTATTAAAATTACAG
Found at i:32756946 original size:7 final size:7
Alignment explanation
Indices: 32756908--32756996 Score: 65
Period size: 7 Copynumber: 13.0 Consensus size: 7
32756898 TTCTTTTCAA
*
32756908 CTCAATA
1 CTCAATC
32756915 CTCAATC
1 CTCAATC
* *
32756922 ATAAATC
1 CTCAATC
* *
32756929 CTAAATT
1 CTCAATC
32756936 CTCAATC
1 CTCAATC
*
32756943 CTCAATT
1 CTCAATC
*
32756950 TTCAATC
1 CTCAATC
32756957 CTC-ATC
1 CTCAATC
32756963 CTC-ATC
1 CTCAATC
* *
32756969 CCCAATT
1 CTCAATC
* *
32756976 TTTAATC
1 CTCAATC
32756983 CTCAATC
1 CTCAATC
32756990 CTCAATC
1 CTCAATC
32756997 ATTAATTCTC
Statistics
Matches: 62, Mismatches: 19, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
6 11 0.18
7 51 0.82
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.35
Consensus pattern (7 bp):
CTCAATC
Found at i:32756959 original size:14 final size:14
Alignment explanation
Indices: 32756925--32757009 Score: 75
Period size: 14 Copynumber: 6.2 Consensus size: 14
32756915 CTCAATCATA
*
32756925 AATCCTAAATTCTC
1 AATCCTCAATTCTC
*
32756939 AATCCTCAATTTTC
1 AATCCTCAATTCTC
*
32756953 AATCCTC-ATCCTC
1 AATCCTCAATTCTC
* * *
32756966 -ATCCCCAATTTTT
1 AATCCTCAATTCTC
*
32756979 AATCCTCAATCCTC
1 AATCCTCAATTCTC
* *
32756993 AATCATTAATTCTC
1 AATCCTCAATTCTC
32757007 AAT
1 AAT
32757010 TTTCAATTAT
Statistics
Matches: 54, Mismatches: 15, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
12 5 0.09
13 7 0.13
14 42 0.78
ACGTcount: A:0.31, C:0.32, G:0.00, T:0.38
Consensus pattern (14 bp):
AATCCTCAATTCTC
Found at i:32756976 original size:26 final size:27
Alignment explanation
Indices: 32756925--32756993 Score: 86
Period size: 26 Copynumber: 2.6 Consensus size: 27
32756915 CTCAATCATA
* * *
32756925 AATCCTAAATTCTCAATCCTCAATTTTC
1 AATCCTCAATCCTC-ATCCCCAATTTTC
*
32756953 AATCCTC-ATCCTCATCCCCAATTTTT
1 AATCCTCAATCCTCATCCCCAATTTTC
32756979 AATCCTCAATCCTCA
1 AATCCTCAATCCTCA
32756994 ATCATTAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 18 0.50
27 12 0.33
28 6 0.17
ACGTcount: A:0.29, C:0.35, G:0.00, T:0.36
Consensus pattern (27 bp):
AATCCTCAATCCTCATCCCCAATTTTC
Found at i:32757016 original size:21 final size:21
Alignment explanation
Indices: 32756960--32757009 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
32756950 TTCAATCCTC
* **
32756960 ATCCTC-ATCCCCAATTTTTA
1 ATCCTCAATCCTCAATCATTA
32756980 ATCCTCAATCCTCAATCATTA
1 ATCCTCAATCCTCAATCATTA
*
32757001 ATTCTCAAT
1 ATCCTCAAT
32757010 TTTCAATTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 6 0.24
21 19 0.76
ACGTcount: A:0.30, C:0.32, G:0.00, T:0.38
Consensus pattern (21 bp):
ATCCTCAATCCTCAATCATTA
Found at i:32757077 original size:20 final size:20
Alignment explanation
Indices: 32757039--32757077 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
32757029 CATTTTCTAA
*
32757039 ATTTTATTCTCTTTGATTTT
1 ATTTTATTCTCTTTCATTTT
32757059 ATTTTATTC-CTTATCATTT
1 ATTTTATTCTCTT-TCATTT
32757078 GTAAAATGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.18, C:0.13, G:0.03, T:0.67
Consensus pattern (20 bp):
ATTTTATTCTCTTTCATTTT
Found at i:32762300 original size:19 final size:19
Alignment explanation
Indices: 32762272--32762311 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
32762262 TATTTTCAAG
*
32762272 AATTTAATTAT-GAAATAT
1 AATTTAATTATAGAAAAAT
32762290 AATTGTAATTATAGAAAAAT
1 AATT-TAATTATAGAAAAAT
32762310 AA
1 AA
32762312 AAATAAACCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 7 0.37
20 8 0.42
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (19 bp):
AATTTAATTATAGAAAAAT
Found at i:32762754 original size:22 final size:21
Alignment explanation
Indices: 32762724--32762782 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
32762714 ATACAATCGT
*
32762724 AGATTTGATATGTAATCTTAGG
1 AGATTTGATTTGTAATCTTA-G
*
32762746 AGATATGATTTTGTAAATCTTAG
1 AGATTTGA-TTTGT-AATCTTAG
32762769 AGATTTGATTTGTA
1 AGATTTGATTTGTA
32762783 GATACCATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 1 0.03
22 12 0.38
23 12 0.38
24 7 0.22
ACGTcount: A:0.32, C:0.03, G:0.20, T:0.44
Consensus pattern (21 bp):
AGATTTGATTTGTAATCTTAG
Found at i:32767899 original size:22 final size:21
Alignment explanation
Indices: 32767869--32767927 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
32767859 ATTCAATCGT
*
32767869 AGATTTGATATGTAATCTTAGG
1 AGATTTGATTTGTAATCTTA-G
*
32767891 AGATATGATTTTGTAAATCTTAG
1 AGATTTGA-TTTGT-AATCTTAG
32767914 AGATTTGATTTGTA
1 AGATTTGATTTGTA
32767928 GATACCATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 1 0.03
22 12 0.38
23 12 0.38
24 7 0.22
ACGTcount: A:0.32, C:0.03, G:0.20, T:0.44
Consensus pattern (21 bp):
AGATTTGATTTGTAATCTTAG
Found at i:32771134 original size:21 final size:22
Alignment explanation
Indices: 32771097--32771139 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
32771087 TTATAACATA
*
32771097 TTCAATTCTCATCACTTGCTAT
1 TTCAAATCTCATCACTTGCTAT
*
32771119 TTCAAATCTCAT-ACTTTCTAT
1 TTCAAATCTCATCACTTGCTAT
32771140 ACAAATAGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.26, C:0.26, G:0.02, T:0.47
Consensus pattern (22 bp):
TTCAAATCTCATCACTTGCTAT
Found at i:32771386 original size:37 final size:37
Alignment explanation
Indices: 32771336--32771456 Score: 127
Period size: 37 Copynumber: 3.1 Consensus size: 37
32771326 TTCGAAGTAA
*
32771336 TAAATTGACACCCAGTGTCTCATCGGCTAAATCGAAG
1 TAAATTGACACCCAGTGTCTCATCGACTAAATCGAAG
* * * * *
32771373 TAAATTGGCACCCAGTGCCTCATCAAATTAATCCGAAG
1 TAAATTGACACCCAGTGTCTCATCGACTAAAT-CGAAG
32771411 TAATAAATTGACACCCAGTGTCTCATCGACTCAAAGTCGAAG
1 ---TAAATTGACACCCAGTGTCTCATCGACT-AAA-TCGAAG
32771453 -AAAT
1 TAAAT
32771457 CCCTGAACTC
Statistics
Matches: 67, Mismatches: 11, Indels: 11
0.75 0.12 0.12
Matches are distributed among these distances:
37 26 0.39
38 9 0.13
41 24 0.36
42 7 0.10
43 1 0.01
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.24
Consensus pattern (37 bp):
TAAATTGACACCCAGTGTCTCATCGACTAAATCGAAG
Found at i:32771426 original size:41 final size:40
Alignment explanation
Indices: 32771327--32771437 Score: 138
Period size: 37 Copynumber: 2.8 Consensus size: 40
32771317 ATCGGATAAT
*** *
32771327 TCGAAGTAATAAATTGACACCCAGTGTCTCATCGGCTAAA
1 TCGAAGTAATAAATTGACACCCAGTGTCTCATCAAATTAA
* *
32771367 TCGAAG---TAAATTGGCACCCAGTGCCTCATCAAATTAA
1 TCGAAGTAATAAATTGACACCCAGTGTCTCATCAAATTAA
32771404 TCCGAAGTAATAAATTGACACCCAGTGTCTCATC
1 T-CGAAGTAATAAATTGACACCCAGTGTCTCATC
32771438 GACTCAAAGT
Statistics
Matches: 59, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
37 26 0.44
38 5 0.08
40 6 0.10
41 22 0.37
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.25
Consensus pattern (40 bp):
TCGAAGTAATAAATTGACACCCAGTGTCTCATCAAATTAA
Found at i:32772306 original size:21 final size:21
Alignment explanation
Indices: 32772282--32772347 Score: 71
Period size: 21 Copynumber: 3.0 Consensus size: 21
32772272 GAAACCCTAA
32772282 CTTTTCTCCTTCTTTCTTTCT
1 CTTTTCTCCTTCTTTCTTTCT
*
32772303 CTTTCTCTTTCCTTTCTTTCCTTCT
1 CTTT-TC--TCC-TTCTTTCTTTCT
32772328 CTATTT-TCCTTCTTTCTTTC
1 CT-TTTCTCCTTCTTTCTTTC
32772348 CTTCTTTTTC
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
21 14 0.37
22 5 0.13
24 3 0.08
25 14 0.37
26 2 0.05
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.65
Consensus pattern (21 bp):
CTTTTCTCCTTCTTTCTTTCT
Found at i:32772320 original size:25 final size:25
Alignment explanation
Indices: 32772291--32772372 Score: 85
Period size: 25 Copynumber: 3.2 Consensus size: 25
32772281 ACTTTTCTCC
*
32772291 TTCTTTCTTTCTCTTTCTCTTTCCT
1 TTCTTTCCTTCTCTTTCTCTTTCCT
* *
32772316 TTCTTTCCTTCTCTATTTTCCTT-CT
1 TTCTTTCCTTCTCT-TTCTCTTTCCT
* * *
32772341 TTCTTTCCTTCTTTTTCTATTTCTAT
1 TTCTTTCCTTCTCTTTCTCTTTC-CT
32772367 TTCTTT
1 TTCTTT
32772373 TACTTAATTA
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
24 5 0.11
25 28 0.61
26 13 0.28
ACGTcount: A:0.04, C:0.28, G:0.00, T:0.68
Consensus pattern (25 bp):
TTCTTTCCTTCTCTTTCTCTTTCCT
Found at i:32772337 original size:13 final size:12
Alignment explanation
Indices: 32772288--32772354 Score: 63
Period size: 12 Copynumber: 5.8 Consensus size: 12
32772278 CTAACTTTTC
32772288 TCCTTCTTTCTT
1 TCCTTCTTTCTT
32772300 T-C-TCTTTCTCT
1 TCCTTCTTTCT-T
*
32772311 T--TCCTTTCTT
1 TCCTTCTTTCTT
32772321 TCCTTCTCTAT-TT
1 TCCTTCT-T-TCTT
32772334 TCCTTCTTTCTT
1 TCCTTCTTTCTT
32772346 TCCTTCTTT
1 TCCTTCTTT
32772355 TTCTATTTCT
Statistics
Matches: 46, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
10 9 0.20
11 10 0.22
12 16 0.35
13 10 0.22
14 1 0.02
ACGTcount: A:0.01, C:0.33, G:0.00, T:0.66
Consensus pattern (12 bp):
TCCTTCTTTCTT
Found at i:32772355 original size:21 final size:21
Alignment explanation
Indices: 32772288--32772355 Score: 66
Period size: 21 Copynumber: 3.0 Consensus size: 21
32772278 CTAACTTTTC
32772288 TCCTTCTTTCTTTCTCTTTCTCTT
1 TCCTTCTTTCTTTC-C-TTCT-TT
* *
32772312 TCCTTTCTTTCCTT-CTCTATTT
1 TCC-TTCTTTCTTTCCT-TCTTT
32772334 TCCTTCTTTCTTTCCTTCTTT
1 TCCTTCTTTCTTTCCTTCTTT
32772355 T
1 T
32772356 TCTATTTCTA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
21 14 0.38
22 8 0.22
23 3 0.08
24 3 0.08
25 9 0.24
ACGTcount: A:0.01, C:0.32, G:0.00, T:0.66
Consensus pattern (21 bp):
TCCTTCTTTCTTTCCTTCTTT
Found at i:32772399 original size:5 final size:5
Alignment explanation
Indices: 32772389--32772546 Score: 291
Period size: 5 Copynumber: 31.8 Consensus size: 5
32772379 ATTATTTTAG
32772389 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
32772439 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
*
32772489 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TAT-A TATAA TATTA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
*
32772538 TATTA TATA
1 TATAA TATA
32772547 TTTTAACTTT
Statistics
Matches: 150, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
4 4 0.03
5 146 0.97
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:32775673 original size:24 final size:25
Alignment explanation
Indices: 32775646--32775693 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
32775636 TATTCTAATG
32775646 ATATTTT-AACAAATTATAAGTACA
1 ATATTTTCAACAAATTATAAGTACA
*
32775670 ATATTTTCAACAAATTATATGTAC
1 ATATTTTCAACAAATTATAAGTAC
32775694 GACTTAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.40
Consensus pattern (25 bp):
ATATTTTCAACAAATTATAAGTACA
Found at i:32782964 original size:36 final size:34
Alignment explanation
Indices: 32782898--32782965 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 34
32782888 TCGTTTTACT
*
32782898 TTTTTTTCATTACCATACATTCATATCTTTCTAC
1 TTTTTTTCATTACCATACATTCATACCTTTCTAC
32782932 TTTTTTTCATTACCATACATTCACGTACCTTTCT
1 TTTTTTTCATTACCATACATTCA--TACCTTTCT
32782966 CTCATGTGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 23 0.74
36 8 0.26
ACGTcount: A:0.22, C:0.25, G:0.01, T:0.51
Consensus pattern (34 bp):
TTTTTTTCATTACCATACATTCATACCTTTCTAC
Found at i:32790304 original size:35 final size:35
Alignment explanation
Indices: 32790246--32791098 Score: 1670
Period size: 35 Copynumber: 24.3 Consensus size: 35
32790236 AATCATATCT
32790246 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
32790283 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
32790318 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
32790353 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
32790388 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
32790423 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
32790458 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
32790493 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
32790528 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
32790563 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
32790598 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
32790633 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
32790668 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
32790703 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
32790738 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
32790773 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
32790808 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
32790843 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
32790878 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
32790913 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
32790948 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
32790983 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
32791018 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
32791053 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
32791089 TCTAAGATTG
1 TCTAAGATTG
32791099 CATATCATTG
Statistics
Matches: 814, Mismatches: 1, Indels: 3
1.00 0.00 0.00
Matches are distributed among these distances:
35 789 0.97
36 15 0.02
37 10 0.01
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.37
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:32791114 original size:17 final size:18
Alignment explanation
Indices: 32790246--32791103 Score: 369
Period size: 17 Copynumber: 48.8 Consensus size: 18
32790236 AATCATATCT
* *
32790246 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATAT-ACA
*
32790265 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
32790283 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
32790300 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
32790318 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
32790335 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
32790353 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
32790370 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
32790388 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
32790405 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
32790423 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
32790440 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
32790458 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
32790475 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
32790493 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
32790510 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
32790528 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
32790545 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
32790563 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
32790580 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
32790598 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
32790615 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
32790633 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
32790650 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
32790668 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
32790685 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
32790703 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
32790720 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
32790738 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
32790755 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
32790773 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
32790790 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
32790808 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
32790825 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
32790843 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
32790860 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
32790878 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
32790895 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
32790913 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
32790930 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
32790948 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
32790965 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
32790983 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
32791000 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
32791018 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
32791035 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
32791053 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
32791070 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATAT-ACA
32791089 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
32791104 CATTGAAGAT
Statistics
Matches: 768, Mismatches: 2, Indels: 138
0.85 0.00 0.15
Matches are distributed among these distances:
17 368 0.48
18 368 0.48
19 32 0.04
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.37
Consensus pattern (18 bp):
TCTAAGATTGCATATACA
Found at i:32791955 original size:207 final size:207
Alignment explanation
Indices: 32791498--32792084 Score: 951
Period size: 207 Copynumber: 2.8 Consensus size: 207
32791488 AAATCTACTT
* * *
32791498 CTTCAATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
** *
32791563 GTGAAAGCCAAATCAGCTATGTCTTCGATTTACTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * * ** * *
32791628 GGATC-TACTTTAGTCTAATCATCTGAAGGTTAGATCTGCTATATGTCTGTCCTCCGTCGAATAT
131 GGATCTTGCTTAAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
32791692 GGAGACGCCAAA
196 GGAGACGCCAAA
* *
32791704 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
*
32791769 GTAAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
32791834 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTTGAATAT
131 GGATCTTGCTTAAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
32791899 GGAGACGCCAAA
196 GGAGACGCCAAA
* * *
32791911 CTTCGATTTGTTCTCTGACAATATAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
* *
32791976 GTGAAAGCCAAACCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAAGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
32792041 GGATCTTGCTTAAGTATAAACATCTGAAGGCCAGATCTGCTATG
131 GGATCTTGCTTAAGTATAAACATCTGAAGGCCAGATCTGCTATG
32792085 CTTTAACCTG
Statistics
Matches: 353, Mismatches: 27, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
206 126 0.36
207 227 0.64
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (207 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTTGCTTAAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
GGAGACGCCAAA
Found at i:32792320 original size:88 final size:86
Alignment explanation
Indices: 32792090--32792374 Score: 336
Period size: 88 Copynumber: 3.4 Consensus size: 86
32792080 CTATGCTTTA
* *
32792090 ACCTGTTACCCTACTGCTTAAGGGG-TTAAGGC-G-CATCTTCGATCTGCTCCACTACTGCTTAG
1 ACCTGTTACCCTACTGCTT-AGGGGATTAAGGCAGTCGTCGTCGATCTGCTCCACTACTGCTTAG
**
32792152 GGAGATAAGATCCACAATTTTG
65 GGAGATAAGATCTGCAATTTTG
* * **
32792174 ACCTGTCACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCGTTGATCTATTCCACTACTGCTTAG
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGGC-AGTCGTCGTCGATCTGCTCCACTACTGCTTAG
*
32792239 GGAGATAAGATCTGTAATTTTTG
65 GGAGATAAGATCTGCAA-TTTTG
* *
32792262 -CCTGTTACCCTATTGCTTAGGGGGATTAAGGCAAGTCGTCGTCGATCTGCTCCGCTACTGCTTA
1 ACCTGTTACCCTACTGCTTA-GGGGATTAAGGC-AGTCGTCGTCGATCTGCTCCACTACTGCTTA
* *
32792326 GGAAGATAAGATCTGCGA-----
64 GGGAGATAAGATCTGCAATTTTG
*
32792344 ACCTGTTACCCTACTGATTAGGGGATTAAGG
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGG
32792375 TGCTGAATTT
Statistics
Matches: 173, Mismatches: 21, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
82 11 0.06
83 22 0.13
84 25 0.14
86 1 0.01
87 55 0.32
88 59 0.34
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.30
Consensus pattern (86 bp):
ACCTGTTACCCTACTGCTTAGGGGATTAAGGCAGTCGTCGTCGATCTGCTCCACTACTGCTTAGG
GAGATAAGATCTGCAATTTTG
Found at i:32793341 original size:1 final size:1
Alignment explanation
Indices: 32793331--32793409 Score: 68
Period size: 1 Copynumber: 79.0 Consensus size: 1
32793321 GGCCTCTCCA
* * * * * * * *
32793331 TTTTTCTTTTTTCTTTTTTCTCTTTTTTTCTTTTTTTTTTCTTTTTTTTCTTTTTTTTCTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
**
32793396 TTTCCTTTTTTTTT
1 TTTTTTTTTTTTTT
32793410 GAAATAGAAG
Statistics
Matches: 60, Mismatches: 18, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 60 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (1 bp):
T
Found at i:32793359 original size:10 final size:9
Alignment explanation
Indices: 32793337--32793408 Score: 99
Period size: 9 Copynumber: 7.7 Consensus size: 9
32793327 TCCATTTTTC
32793337 TTTTTTCTT
1 TTTTTTCTT
*
32793346 TTTTCTCTT
1 TTTTTTCTT
*
32793355 TTTTTCTTTT
1 TTTTT-TCTT
32793365 TTTTTTCTT
1 TTTTTTCTT
32793374 TTTTTTCTT
1 TTTTTTCTT
32793383 TTTTTTCTTT
1 TTTTTTC-TT
32793393 TTTTTTCCTT
1 TTTTTT-CTT
32793403 TTTTTT
1 TTTTTT
32793409 TGAAATAGAA
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
9 31 0.55
10 24 0.43
11 1 0.02
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:32793376 original size:29 final size:29
Alignment explanation
Indices: 32793332--32793408 Score: 120
Period size: 29 Copynumber: 2.7 Consensus size: 29
32793322 GCCTCTCCAT
*
32793332 TTTTCTTTTTTCTTTTTTCTC-TTTTTTTC
1 TTTT-TTTTTTCTTTTTTTTCTTTTTTTTC
32793361 TTTTTTTTTTCTTTTTTTTCTTTTTTTTC
1 TTTTTTTTTTCTTTTTTTTCTTTTTTTTC
*
32793390 TTTTTTTTTCCTTTTTTTT
1 TTTTTTTTTTCTTTTTTTT
32793409 TGAAATAGAA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
28 15 0.33
29 30 0.67
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (29 bp):
TTTTTTTTTTCTTTTTTTTCTTTTTTTTC
Found at i:32793407 original size:28 final size:30
Alignment explanation
Indices: 32793331--32793407 Score: 106
Period size: 28 Copynumber: 2.6 Consensus size: 30
32793321 GGCCTCTCCA
*
32793331 TTTTTCTTTTTTC-TTTTTTCTCTTTTTTTC
1 TTTTT-TTTTTCCTTTTTTTCTCTTTTTTTC
*
32793361 TTTTTTTTTTCTTTTTTTTCT-TTTTTTTC
1 TTTTTTTTTTCCTTTTTTTCTCTTTTTTTC
32793390 -TTTTTTTTTCCTTTTTTT
1 TTTTTTTTTTCCTTTTTTT
32793408 TTGAAATAGA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
28 17 0.40
29 13 0.30
30 13 0.30
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (30 bp):
TTTTTTTTTTCCTTTTTTTCTCTTTTTTTC
Found at i:32795874 original size:789 final size:789
Alignment explanation
Indices: 32794355--32795936 Score: 2812
Period size: 789 Copynumber: 2.0 Consensus size: 789
32794345 CAAGGAACTT
*
32794355 GCAAGCCTCAATAACTTGATCAAAACTTGATTGAATTGAGACTCGCTAACCCCATCCCTGAAAAT
1 GCAAGCCTCAATAACTTGATCAAAACTTAATTGAATTGAGACTCGCTAACCCCATCCCTGAAAAT
*
32794420 AATGATTTGATCAGGTTTCCTCTTCCCTGAACTTGTATAGAAATCTAAGAGAGCTTCCTTCATGA
66 AATGATTTGATCAGGTTTCCTCTTCCCTGAACTTGTATAGAAATCTAAAAGAGCTTCCTTCATGA
*
32794485 TACCGTCATCCACTTTGTCAGAAACTGGTTTTGAAGAAAGAATCTATCATTTTAAGCTTCAGAGA
131 TACCATCATCCACTTTGTCAGAAACTGGTTTTGAAGAAAGAATCTATCATTTTAAGCTTCAGAGA
*
32794550 CTACATACGGCCTGATGCCCCATAGTTGGAAATCAATGGCCACCGCCTGATGCTAACCATCGCAG
196 CTACATACGGCCTGATGCCCCATAGATGGAAATCAATGGCCACCGCCTGATGCTAACCATCGCAG
32794615 CTATTGACGGCACATCAGACTGCTCAGGAAAGCCAAACAAGGCACCAATTCCAAGGATGATGGTT
261 CTATTGACGGCACATCAGACTGCTCAGGAAAGCCAAACAAGGCACCAATTCCAAGGATGATGGTT
* *
32794680 GGAACCTTTGAAACAACTGAAATTGAAGTTTTTTGCCCCAGCGTAAGCATAGAGAGTAAGCGGTA
326 GGAACCTTTGAAACAACTGAAATTGAAGGTGTTTGCCCCAGCGTAAGCATAGAGAGTAAGCGGTA
*
32794745 GTTTCTTATGCCAATTTTTACCAGTCTCGATCATCTTCTGTAATTTGTTTCTTTCTTCTCTTTTT
391 GTTTCTTATGCCAATTTTTACCAGTCTCGATCATCTTCTGTAATTTGTTTCTTTCTTCTCTTTTC
* *
32794810 TTTTGGCAACCTTTGTTATACTGTGGTATGGCACACTATCTTTGAAAAGACTGCAAACTTTTGGT
456 TTTTGGAAACCTTTGTTATACTGTGGTATGGCACACTATCTTTGAAAAGACTGCAAACTTTTGGC
32794875 ATTGTGCAGTTATATATAATCTTTTTTTTTTGAAATGGATGACTTTTGACTTTGTAATATTGGCA
521 ATTGTGCAGTTATATATAATCTTTTTTTTTTGAAATGGATGACTTTTGACTTTGTAATATTGGCA
* * *
32794940 TATGAAGCTATCTCCCCCTCTTAATGGAGTAGTTGACGTCCACAAAGATGAGTCATTGTCAGCTT
586 TATGAAGCTATCTCCCCCTCTTAATGGAGCAATTGAAGTCCACAAAGATGAGTCATTGTCAGCTT
32795005 GAAACTTTTGACGAGCTCGGGCCCATAACATACATGCCCCATAAGTCTTGACTCCCTTAAATTTG
651 GAAACTTTTGACGAGCTCGGGCCCATAACATACATGCCCCATAAGTCTTGACTCCCTTAAATTTG
32795070 GCATTCATTGTACAACTGATGCGATCCCTTTTCATGGTGGACCAACAGTGCCCCAAAACCTCATG
716 GCATTCATTGTACAACTGATGCGATCCCTTTTCATGGTGGACCAACAGTGCCCCAAAACCTCATG
32795135 TTTATTCTG
781 TTTATTCTG
*
32795144 GCAAGCCTCAATAACTTGATCAAAACTTAATTGAATTGAGACTCGCTAACCCCATCCTTGAAAAT
1 GCAAGCCTCAATAACTTGATCAAAACTTAATTGAATTGAGACTCGCTAACCCCATCCCTGAAAAT
*
32795209 AATGATTTGATCAGGTTTCCTCTTCCCTGAACTTGTATAGAAATCTAAAAGAGCTTCCTTCATGG
66 AATGATTTGATCAGGTTTCCTCTTCCCTGAACTTGTATAGAAATCTAAAAGAGCTTCCTTCATGA
32795274 TACCATCATCCACTTTGTCAGAAACTGGTTTTGAAGAAAGAATCTATCATTTTAAGCTTCAGAGA
131 TACCATCATCCACTTTGTCAGAAACTGGTTTTGAAGAAAGAATCTATCATTTTAAGCTTCAGAGA
***
32795339 CTGTGTACGGCCTGATGCCCCATAGATGGAAATCAATGGCCACCGCCTGGA-GCTAACCATCGCA
196 CTACATACGGCCTGATGCCCCATAGATGGAAATCAATGGCCACCGCCT-GATGCTAACCATCGCA
* * * * *
32795403 GCTATTGACGGCACATCAGACTGCTTAGGAAAGCCAGACAATGCACCCATTCCAAGGATGGTGGT
260 GCTATTGACGGCACATCAGACTGCTCAGGAAAGCCAAACAAGGCACCAATTCCAAGGATGATGGT
* *
32795468 TGGAACCTTTGAAACAACTGGAATTGATGGTGTTTGCCCCAGCGTAAGCATAGAGAGTAAGCGGT
325 TGGAACCTTTGAAACAACTGAAATTGAAGGTGTTTGCCCCAGCGTAAGCATAGAGAGTAAGCGGT
* * *
32795533 AGTTTCTTATGCCAATTTTTACCAGTCTCGGTCATCTTCTGTAATTT-TTTTTCTTCTTTTTCTT
390 AGTTTCTTATGCCAATTTTTACCAGTCTCGATCATCTTCTGTAATTTGTTTCT-TTC-TTCTCTT
* * * * *
32795597 TTCTTTTGGAAACCTTTTTTGTACTGTGGTATGGCGCATTATCTTTGAAAATACTGCAAACTTTT
453 TTCTTTTGGAAACCTTTGTTATACTGTGGTATGGCACACTATCTTTGAAAAGACTGCAAACTTTT
32795662 GGCATTGTGCAG-T-TATATAATCTTTTCTTTTTTGAAATGGATGACTTTTGACTTTGTAATATT
518 GGCATTGTGCAGTTATATATAATCTTTT-TTTTTTGAAATGGATGACTTTTGACTTTGTAATATT
32795725 GGCATATGAAGCTATCTCCCCCTCTTAATGGAGCAATTGAAGTCCACAAAGATGAGTCATTGTCA
582 GGCATATGAAGCTATCTCCCCCTCTTAATGGAGCAATTGAAGTCCACAAAGATGAGTCATTGTCA
32795790 GCTTGAAACTTTTGACGAGCTCGGGCCCATAACATACATGCCCCATAAGTCTTGACTCCCTTAAA
647 GCTTGAAACTTTTGACGAGCTCGGGCCCATAACATACATGCCCCATAAGTCTTGACTCCCTTAAA
32795855 TTTGGCATTCATTGTACAACTGATGCGATCCCTTTTCATGGTGGACCAACAGTGCCCCAAAACCT
712 TTTGGCATTCATTGTACAACTGATGCGATCCCTTTTCATGGTGGACCAACAGTGCCCCAAAACCT
32795920 CATGTTTATTCTG
777 CATGTTTATTCTG
32795933 GCAA
1 GCAA
32795937 TTGCAAATCC
Statistics
Matches: 757, Mismatches: 32, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
788 17 0.02
789 663 0.88
790 77 0.10
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.32
Consensus pattern (789 bp):
GCAAGCCTCAATAACTTGATCAAAACTTAATTGAATTGAGACTCGCTAACCCCATCCCTGAAAAT
AATGATTTGATCAGGTTTCCTCTTCCCTGAACTTGTATAGAAATCTAAAAGAGCTTCCTTCATGA
TACCATCATCCACTTTGTCAGAAACTGGTTTTGAAGAAAGAATCTATCATTTTAAGCTTCAGAGA
CTACATACGGCCTGATGCCCCATAGATGGAAATCAATGGCCACCGCCTGATGCTAACCATCGCAG
CTATTGACGGCACATCAGACTGCTCAGGAAAGCCAAACAAGGCACCAATTCCAAGGATGATGGTT
GGAACCTTTGAAACAACTGAAATTGAAGGTGTTTGCCCCAGCGTAAGCATAGAGAGTAAGCGGTA
GTTTCTTATGCCAATTTTTACCAGTCTCGATCATCTTCTGTAATTTGTTTCTTTCTTCTCTTTTC
TTTTGGAAACCTTTGTTATACTGTGGTATGGCACACTATCTTTGAAAAGACTGCAAACTTTTGGC
ATTGTGCAGTTATATATAATCTTTTTTTTTTGAAATGGATGACTTTTGACTTTGTAATATTGGCA
TATGAAGCTATCTCCCCCTCTTAATGGAGCAATTGAAGTCCACAAAGATGAGTCATTGTCAGCTT
GAAACTTTTGACGAGCTCGGGCCCATAACATACATGCCCCATAAGTCTTGACTCCCTTAAATTTG
GCATTCATTGTACAACTGATGCGATCCCTTTTCATGGTGGACCAACAGTGCCCCAAAACCTCATG
TTTATTCTG
Found at i:32799342 original size:22 final size:21
Alignment explanation
Indices: 32799307--32799382 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
32799297 AAAGGATCTC
* *
32799307 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
32799328 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
32799351 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
32799370 TGC-AATCATATCT
1 TACAAATCATATCT
32799383 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:32799399 original size:35 final size:37
Alignment explanation
Indices: 32799343--32799433 Score: 141
Period size: 35 Copynumber: 2.5 Consensus size: 37
32799333 AATCATATCT
*
32799343 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCATATCACA
32799380 TCTAAGATTG-TATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGATATCATATCTAAGATTGCATATCACA
32799416 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
32799434 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
35 19 0.38
36 15 0.30
37 10 0.20
38 6 0.12
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (37 bp):
TCTAAGATTGATATCATATCTAAGATTGCATATCACA
Found at i:32799412 original size:14 final size:15
Alignment explanation
Indices: 32799357--32799412 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
32799347 AGATTGCATA
32799357 TCATATCTAAGATTG
1 TCATATCTAAGATTG
32799372 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
32799390 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
32799407 -CATATC
1 TCATATC
32799413 ACATCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:32799441 original size:17 final size:19
Alignment explanation
Indices: 32799343--32799433 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
32799333 AATCATATCT
32799343 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
32799362 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
32799380 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
32799397 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
32799416 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
32799434 TGAAGATTAT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 35 0.52
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:32802307 original size:40 final size:40
Alignment explanation
Indices: 32802231--32802342 Score: 156
Period size: 40 Copynumber: 2.8 Consensus size: 40
32802221 TACCAGCTCG
* *
32802231 TAGCCTGCGGGTCTCT-AGCCTGGATAACATTCCAGCACGA
1 TAGCCTGCGGGTCTTTAAGCCTGGATAACATTTCAGCA-GA
* *
32802271 -AGCCTGCGGGTCTTTAAGCCCGGATAACATTTCAGCATA
1 TAGCCTGCGGGTCTTTAAGCCTGGATAACATTTCAGCAGA
*
32802310 TAACCTGCGGGTCTTTAAGCCTGGATAACATTT
1 TAGCCTGCGGGTCTTTAAGCCTGGATAACATTT
32802343 TCTCAAGTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
39 15 0.23
40 49 0.77
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
TAGCCTGCGGGTCTTTAAGCCTGGATAACATTTCAGCAGA
Found at i:32805636 original size:19 final size:19
Alignment explanation
Indices: 32805607--32805697 Score: 134
Period size: 19 Copynumber: 4.9 Consensus size: 19
32805597 ATAATCTTCA
32805607 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
* *
32805626 GTGATAAGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32805645 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32805662 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
32805680 ATGATATGCAAACTTAGA
1 ATGATATGCAATCTTAGA
32805698 AGATATGATT
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
17 16 0.25
18 16 0.25
19 33 0.51
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.34
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:32805678 original size:35 final size:36
Alignment explanation
Indices: 32805615--32805685 Score: 117
Period size: 35 Copynumber: 2.0 Consensus size: 36
32805605 CAATGATATG
*
32805615 CAATCTTAGATGTGATAAGCAATCTTAGATATGATA
1 CAATCTTAGATATGATAAGCAATCTTAGATATGATA
*
32805651 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
1 CAATCTTAGATATGATAAGCAATCTTAGATATGATA
32805686 TGCAAACTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
35 18 0.55
36 15 0.45
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.35
Consensus pattern (36 bp):
CAATCTTAGATATGATAAGCAATCTTAGATATGATA
Found at i:32805707 original size:40 final size:35
Alignment explanation
Indices: 32805619--32805697 Score: 104
Period size: 35 Copynumber: 2.2 Consensus size: 35
32805609 GATATGCAAT
* * *
32805619 CTTAGATGTGATAAGCAATCTTAGATATGATACAAT
1 CTTAGATATGAT-TGCAATCTTAGATATGATACAAA
32805655 CTTAGATATGATTGCAATCTTAGATATGATATGCAAA
1 CTTAGATATGATTGCAATCTTAGATATGATA--CAAA
32805692 CTTAGA
1 CTTAGA
32805698 AGATATGATT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
35 18 0.47
36 11 0.29
37 9 0.24
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.34
Consensus pattern (35 bp):
CTTAGATATGATTGCAATCTTAGATATGATACAAA
Found at i:32810829 original size:6 final size:6
Alignment explanation
Indices: 32810820--32810878 Score: 52
Period size: 6 Copynumber: 9.8 Consensus size: 6
32810810 AAAAAAGGAA
* *
32810820 AAAAAG -AAAAG AAAAAG AAAAAAAG AAAAAG AAAAA- AGAGA- AAAAAG
1 AAAAAG AAAAAG AAAAAG --AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
32810867 AAAAAAG AAAAA
1 -AAAAAG AAAAA
32810879 TGGAGAGGCC
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
5 11 0.25
6 21 0.48
7 6 0.14
8 6 0.14
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:32810829 original size:7 final size:7
Alignment explanation
Indices: 32810810--32810878 Score: 72
Period size: 7 Copynumber: 9.7 Consensus size: 7
32810800 TCTATTTCAA
32810810 AAAAAAGG
1 AAAAAA-G
32810818 AAAAAA-
1 AAAAAAG
*
32810824 AGAAAAG
1 AAAAAAG
32810831 -AAAAAG
1 AAAAAAG
32810837 AAAAAA-
1 AAAAAAG
32810843 AGAAAAAG
1 A-AAAAAG
32810851 AAAAAAGAG
1 -AAAAA-AG
32810860 AAAAAAG
1 AAAAAAG
32810867 AAAAAAG
1 AAAAAAG
32810874 AAAAA
1 AAAAA
32810879 TGGAGAGGCC
Statistics
Matches: 53, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
6 11 0.21
7 24 0.45
8 15 0.28
9 3 0.06
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:32810835 original size:14 final size:13
Alignment explanation
Indices: 32810808--32810878 Score: 88
Period size: 14 Copynumber: 5.2 Consensus size: 13
32810798 CTTCTATTTC
*
32810808 AAAAAAAAGGAAA
1 AAAAAAAAAGAAA
*
32810821 AAAAGAAAAGAAA
1 AAAAAAAAAGAAA
32810834 AAGAAAAAAAGAAA
1 AA-AAAAAAAGAAA
32810848 AAGAAAAAAGAGAAA
1 AA-AAAAAA-AGAAA
32810863 AAAGAAAAAAGAAA
1 AAA-AAAAAAGAAA
32810877 AA
1 AA
32810879 TGGAGAGGCC
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
13 13 0.25
14 27 0.52
15 12 0.23
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAGAAA
Found at i:32810841 original size:29 final size:28
Alignment explanation
Indices: 32810808--32810878 Score: 92
Period size: 27 Copynumber: 2.5 Consensus size: 28
32810798 CTTCTATTTC
*
32810808 AAAAAAAAGGAAAAA-AAGAAAAGA-AAA
1 AAAAAAAAAGAAAAAGAA-AAAAGAGAAA
*
32810835 AGAAAAAAAGAAAAAGAAAAAAGAGAAA
1 AAAAAAAAAGAAAAAGAAAAAAGAGAAA
32810863 AAAGAAAAAAGAAAAA
1 AAA-AAAAAAGAAAAA
32810879 TGGAGAGGCC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 19 0.50
28 7 0.18
29 12 0.32
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (28 bp):
AAAAAAAAAGAAAAAGAAAAAAGAGAAA
Found at i:32810861 original size:9 final size:8
Alignment explanation
Indices: 32810809--32810878 Score: 67
Period size: 8 Copynumber: 8.6 Consensus size: 8
32810799 TTCTATTTCA
32810809 AAAAAAAGG
1 AAAAAAA-G
32810818 AAAAAAAG
1 AAAAAAAG
32810826 AAAAGAAA-
1 AAAA-AAAG
32810834 AAGAAAAA-
1 AA-AAAAAG
32810842 AAGAAAAAG
1 AA-AAAAAG
32810851 -AAAAAAG
1 AAAAAAAG
32810858 AGAAAAAAG
1 A-AAAAAAG
32810867 -AAAAAAG
1 AAAAAAAG
32810874 AAAAA
1 AAAAA
32810879 TGGAGAGGCC
Statistics
Matches: 55, Mismatches: 0, Indels: 13
0.81 0.00 0.19
Matches are distributed among these distances:
7 13 0.24
8 23 0.42
9 19 0.35
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:32811884 original size:43 final size:42
Alignment explanation
Indices: 32811837--32812315 Score: 129
Period size: 43 Copynumber: 11.3 Consensus size: 42
32811827 CGCCTTAATC
32811837 CCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAATTCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAA-TCTTATCT
* * * * *
32811880 CCCTAAGCAGTAGTGG-AGCAGATCGAAGATGTGC---CTTAAC-
1 CCCTAAGCAGTAG-GGTAACAGGT-TAAAAT-TGCAATCTTATCT
* *
32811920 CTCTTAAGCAGTAGGGTAACAGGCTAAAATTGCAGATCTTATCT
1 C-CCTAAGCAGTAGGGTAACAGGTTAAAATTGCA-ATCTTATCT
* * * * *** *
32811964 CCCTAAGCAGT-GGTGGAGCAGATCGAAGACCCGC---CTTAAC-
1 CCCTAAGCAGTAGG-GTAACAGGT-TAA-AATTGCAATCTTATCT
* * *
32812004 CCCGTAAGCAGCAGGGTAACAGGCTAAAATTACAGATCTTATCT
1 CCC-TAAGCAGTAGGGTAACAGGTTAAAATTGCA-ATCTTATCT
* * * * * *
32812048 CCCTAAGCAGTAGTGG-AGCAGATCGAAGACTCGC---CTTAAC-
1 CCCTAAGCAGTAG-GGTAACAGGT-TAA-AATTGCAATCTTATCT
* *
32812088 CTCCTAAGCAGTAGGGTAACAGGTTAAAATTACAGATCTCATCT
1 C-CCTAAGCAGTAGGGTAACAGGTTAAAATTGCA-ATCTTATCT
* * * ** * *** * *
32812132 CCATAAGCAGTAGTGG-AGCA-GATCGAA-GGCCCGCCTTAACC
1 CCCTAAGCAGTAG-GGTAACAGGTTAAAATTG-CAATCTTATCT
* * * *
32812173 CCCTAAGTAATAGGGTAACAGGCTAAAATTACAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAAATTGCA-ATCTTATCT
** * * * *
32812216 CCCTAAGCAGTAGCGG-AGTAGATCGAAGACGATGTGC---CTTAACC
1 CCCTAAGCAGTAG-GGTAACAGGT-TAA-A--AT-TGCAATCTTATCT
* *
32812260 CCCTAAGCAGTAGGGTAACAGGCTAAAATTACAAATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAAATTGC-AATCTTATCT
32812303 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
32812316 TGGAGTGGAT
Statistics
Matches: 294, Mismatches: 95, Indels: 94
0.61 0.20 0.19
Matches are distributed among these distances:
39 10 0.03
40 21 0.07
41 76 0.26
42 15 0.05
43 114 0.39
44 44 0.15
45 10 0.03
47 2 0.01
48 2 0.01
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (42 bp):
CCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAATCTTATCT
Found at i:32811969 original size:84 final size:83
Alignment explanation
Indices: 32811827--32812383 Score: 738
Period size: 84 Copynumber: 6.6 Consensus size: 83
32811817 CAAAATTCAG
* * *
32811827 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAAATTGCA-ATTCTTATCTCCCTAAGCAGT
1 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGA-TCTTATCTCCCTAAGCAGT
32811891 AGTGGAGCAGATCGAAGAT
65 AGTGGAGCAGATCGAAGAT
* * * *
32811910 GTGCCTTAACCTCTTAAGCAGTAGGGTAACAGGCTAAAATTGCAGATCTTATCTCCCTAAGCAGT
1 -CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTATCTCCCTAAGCAGT
* *
32811975 GGTGGAGCAGATCGAAGACC
65 AGTGGAGCAGATCGAAGA-T
* *
32811995 CGCCTTAACCCCGTAAGCAGCAGGGTAACAGGCTAAAATTACAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTATCTCCCTAAGCAGTA
32812060 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGA-T
* * * *
32812079 CGCCTTAACCTCCTAAGCAGTAGGGTAACAGGTTAAAATTACAGATCTCATCTCCATAAGCAGTA
1 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTATCTCCCTAAGCAGTA
**
32812144 GTGGAGCAGATCGAAGGCC
66 GTGGAGCAGATCGAA-GAT
* *
32812163 CGCCTTAACCCCCTAAGTAATAGGGTAACAGGCTAAAATTACAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTATCTCCCTAAGCAGTA
* *
32812228 GCGGAGTAGATCGAAGACGAT
66 GTGGAGCAGATCG-A-A-GAT
* *
32812249 GTGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAAATCTTATCTCCCTAAGCAGT
1 -CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTATCTCCCTAAGCAGT
** *
32812314 AGTGGAGTGGATTGAAGACT
65 AGTGGAGCAGATCGAAGA-T
* * *
32812334 CGCCTTAACTCCCTAAGCAGTAGGGTAATAGGCTAAGATATAGCAGATCT
1 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAT-TA-CAGATCT
32812384 GACCTTCAGA
Statistics
Matches: 419, Mismatches: 45, Indels: 16
0.87 0.09 0.03
Matches are distributed among these distances:
84 332 0.79
85 7 0.02
86 9 0.02
87 71 0.17
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (83 bp):
CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAGAT
Found at i:32812094 original size:41 final size:42
Alignment explanation
Indices: 32811881--32812101 Score: 111
Period size: 41 Copynumber: 5.3 Consensus size: 42
32811871 TTCTTATCTC
*
32811881 CCTAAGCAGTAGTGGAGCAGATCGAAGA-TGTGCCTTAACCT
1 CCTAAGCAGTAGTGGAGCAGATCGAAGACTGCGCCTTAACCT
* * * * * * * *
32811922 CTTAAGCAGTAG-GGTAACAG-GCTAAAATTGCAGATCTT-ATCT
1 CCTAAGCAGTAGTGG-AGCAGATCGAAGACTGC-G-CCTTAACCT
* *
32811964 CCCTAAGCAGTGGTGGAGCAGATCGAAGAC-CCGCCTTAACC-
1 -CCTAAGCAGTAGTGGAGCAGATCGAAGACTGCGCCTTAACCT
* * * * * * * * *
32812005 CCGTAAGCAGCAG-GGTAACAG-GCTAAAATTACAGATCTT-ATCT
1 CC-TAAGCAGTAGTGG-AGCAGATCGAAGACTGC-G-CCTTAACCT
32812048 CCCTAAGCAGTAGTGGAGCAGATCGAAGACT-CGCCTTAACCT
1 -CCTAAGCAGTAGTGGAGCAGATCGAAGACTGCGCCTTAACCT
32812090 CCTAAGCAGTAG
1 CCTAAGCAGTAG
32812102 GGTAACAGGT
Statistics
Matches: 126, Mismatches: 36, Indels: 36
0.64 0.18 0.18
Matches are distributed among these distances:
40 14 0.11
41 48 0.38
42 14 0.11
43 35 0.28
44 15 0.12
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.21
Consensus pattern (42 bp):
CCTAAGCAGTAGTGGAGCAGATCGAAGACTGCGCCTTAACCT
Found at i:32812539 original size:92 final size:92
Alignment explanation
Indices: 32812373--32812644 Score: 370
Period size: 92 Copynumber: 3.0 Consensus size: 92
32812363 AGGCTAAGAT
*
32812373 ATAGCAGATCTGACCTTCAGATGTTTACATCGAAGCGGATCCAAGATGACAGATTTGGCATCTCT
1 ATAGCAGATCTGACCTTCAGGTGTTTACATCGAAGCGGATCCAAGATGACAGATTTGGCATCTCT
*
32812438 GTATGAGACGAGG-AGCAGATCGAAAAC
66 GTATTAGACG-GGTAGCAGATCGAAAAC
* * ** * *
32812465 ATAGTAGATCTGACCTTCAGGTGTTTACATTGAAGCAAATCTAAGATGATAGATTTGGCATCTCT
1 ATAGCAGATCTGACCTTCAGGTGTTTACATCGAAGCGGATCCAAGATGACAGATTTGGCATCTCT
* *
32812530 ATATTAGACGGGTAGCAGATCGAAGAC
66 GTATTAGACGGGTAGCAGATCGAAAAC
* *
32812557 ATAGCAGATCTGATCTTCATGTGTTTACATCGAAGCGGATCCAAGAT-AGCAGATTTGGCATCTC
1 ATAGCAGATCTGACCTTCAGGTGTTTACATCGAAGCGGATCCAAGATGA-CAGATTTGGCATCTC
* * *
32812621 TGTATT-GTCAGATAGCAGATCGAA
65 TGTATTAGACGGGTAGCAGATCGAA
32812645 GATAGTAGAT
Statistics
Matches: 156, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
91 18 0.12
92 138 0.88
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (92 bp):
ATAGCAGATCTGACCTTCAGGTGTTTACATCGAAGCGGATCCAAGATGACAGATTTGGCATCTCT
GTATTAGACGGGTAGCAGATCGAAAAC
Found at i:32812662 original size:44 final size:44
Alignment explanation
Indices: 32812594--32812786 Score: 296
Period size: 44 Copynumber: 4.4 Consensus size: 44
32812584 CATCGAAGCG
* *
32812594 GATCCAAGATAGCAGATTTGGCATCTCTGTATTGTCAGATAGCA
1 GATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCA
* *
32812638 GATCGAAGATAGTAGATTTGGCATCTCTGTATTGTCAGGGAGCA
1 GATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCA
** *
32812682 GATCGAAGATAGCAGATTTGGTGTCTCTGTATTGTCAGAGGGCA
1 GATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCA
* * *
32812726 GATCAAAGATAGCAGATTTGGCATCTCTGTATTGTCAGGGAGTA
1 GATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCA
32812770 GATCGAAGATAGCAGAT
1 GATCGAAGATAGCAGAT
32812787 ATAGTTTTCA
Statistics
Matches: 133, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 133 1.00
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (44 bp):
GATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCA
Found at i:32812854 original size:41 final size:43
Alignment explanation
Indices: 32812809--32812909 Score: 118
Period size: 45 Copynumber: 2.3 Consensus size: 43
32812799 TGTTGACGCT
* *
32812809 GAAGCAGATCTAAGA-AGATTTGGTGTCTCTGTATTAGAC-AG
1 GAAGCAGATCAAAGACAGATTTGGCGTCTCTGTATTAGACGAG
* *
32812850 GAAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGG
1 GAAGCAGATC-AA-A-GACAGATTTGGCGTCTCTGTATTAGACGAG
32812896 GAA-CAGATCAAAGA
1 GAAGCAGATCAAAGA
32812910 TAGTAGATAT
Statistics
Matches: 50, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
41 10 0.20
42 2 0.04
43 2 0.04
44 3 0.06
45 29 0.58
46 4 0.08
ACGTcount: A:0.35, C:0.14, G:0.28, T:0.24
Consensus pattern (43 bp):
GAAGCAGATCAAAGACAGATTTGGCGTCTCTGTATTAGACGAG
Found at i:32812882 original size:45 final size:45
Alignment explanation
Indices: 32812824--32812911 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 45
32812814 AGATCTAAGA
* *
32812824 AGATTTGGTGTCTCTGTATTAGAC-AGGAAGCAGATCGAAGATAAC
1 AGATTTGGCGTCTCTGTATTAGACGAGGAA-CAGATCAAAGATAAC
*
32812869 AGATTTGGCGTCTCTGTATTAGACGGGGAACAGATCAAAGATA
1 AGATTTGGCGTCTCTGTATTAGACGAGGAACAGATCAAAGATA
32812912 GTAGATATCG
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
45 35 0.90
46 4 0.10
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.26
Consensus pattern (45 bp):
AGATTTGGCGTCTCTGTATTAGACGAGGAACAGATCAAAGATAAC
Found at i:32812942 original size:130 final size:129
Alignment explanation
Indices: 32812695--32812947 Score: 298
Period size: 130 Copynumber: 2.0 Consensus size: 129
32812685 CGAAGATAGC
* * *
32812695 AGATTTGGTGTCTCTGTATTGTCAGAGGGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTG
1 AGATTTGGTGTCTCTGTATTGACAGAGAGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTG
* ** * ** *
32812760 TCAGGGAGTAGATCGAAGATAGCAGATATAGTTTTCACGTGTTGACGCTGAAGCAGATCTAAGA
66 ACAGGGAACAGATCAAAGATAGCAGATATAGCCTTCACGAGTTGACGCTGAAGCAGATCTAAGA
* *
32812824 AGATTTGGTGTCTCTGTATTAGACAG-GAAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAT
1 AGATTTGGTGTCTCTGTATT-GACAGAG-AGCAGATCAAAGATAACAGATTTGGCATCTCTGTAT
* * *
32812888 TAGACGGGGAACAGATCAAAGATAGTAGATATCGCCTTC-CTGAGTTG-CAG-TGAAGCAGAT
64 T-GACAGGGAACAGATCAAAGATAGCAGATATAGCCTTCAC-GAGTTGAC-GCTGAAGCAGAT
32812948 TGAAGCCGTC
Statistics
Matches: 104, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
129 21 0.20
130 49 0.47
131 34 0.33
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.28
Consensus pattern (129 bp):
AGATTTGGTGTCTCTGTATTGACAGAGAGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTG
ACAGGGAACAGATCAAAGATAGCAGATATAGCCTTCACGAGTTGACGCTGAAGCAGATCTAAGA
Found at i:32813284 original size:19 final size:19
Alignment explanation
Indices: 32813259--32813347 Score: 139
Period size: 19 Copynumber: 4.8 Consensus size: 19
32813249 ATAATGTTCA
32813259 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
32813278 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32813297 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32813314 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
32813332 ATGATATACAATCTTA
1 ATGATATGCAATCTTA
32813348 AAAGATATGA
Statistics
Matches: 64, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.25
18 16 0.25
19 32 0.50
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:32813299 original size:14 final size:15
Alignment explanation
Indices: 32813280--32813335 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
32813270 TCTTAGATGT
32813280 GATATG-CAATCTTA
1 GATATGACAATCTTA
32813294 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
32813311 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
32813329 GATATGA
1 GATATGA
32813336 TATACAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:32813329 original size:35 final size:37
Alignment explanation
Indices: 32813267--32813347 Score: 130
Period size: 35 Copynumber: 2.2 Consensus size: 37
32813257 CAATGATATG
*
32813267 CAATCTTAGATGTGATATGCAATCTTAGATATG-ATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGAATA
32813303 CAATCTTAGATATGAT-TGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGA-ATA
32813340 CAATCTTA
1 CAATCTTA
32813348 AAAGATATGA
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
35 16 0.38
36 15 0.36
37 11 0.26
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (37 bp):
CAATCTTAGATATGATATGCAATCTTAGATATGAATA
Found at i:32817185 original size:64 final size:64
Alignment explanation
Indices: 32817108--32817329 Score: 300
Period size: 64 Copynumber: 3.5 Consensus size: 64
32817098 TCATTCATAA
* * *
32817108 CACATCTAGTTAGGAGCATTTGACTCATTTCAATCATAGCGTCCTAACTATTTGAAATCAGCAT
1 CACATCTAGTTAGGAGCATTTGACTCATTTCGATCATAGCGTCCTAATTATTTGACATCAGCAT
** * ** * * * * * *
32817172 CGTATCTAGTTAGGGGTTTTTGATTCATTTTGATCATATCATCCTAATTATTTGACATAAGCGT
1 CACATCTAGTTAGGAGCATTTGACTCATTTCGATCATAGCGTCCTAATTATTTGACATCAGCAT
32817236 CACATCTAGTTAGGAGCATTTGACTCATTTCGATCATAGCGTCCTAATTATTTGACATCAGCAT
1 CACATCTAGTTAGGAGCATTTGACTCATTTCGATCATAGCGTCCTAATTATTTGACATCAGCAT
* *
32817300 CACATCTAGTTAGGAGTATTTGATTCATTT
1 CACATCTAGTTAGGAGCATTTGACTCATTT
32817330 TGATGACGGT
Statistics
Matches: 131, Mismatches: 27, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
64 131 1.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGACTCATTTCGATCATAGCGTCCTAATTATTTGACATCAGCAT
Found at i:32817609 original size:43 final size:44
Alignment explanation
Indices: 32817555--32817653 Score: 130
Period size: 43 Copynumber: 2.2 Consensus size: 44
32817545 TTTAAGCCCT
* *
32817555 AAGTCTTATCTTTCTGAGGTAGCAAGAGAGCA-AGTTGAAAATTG
1 AAGTCTTATCTTTCTGAGGTAACAAGAAAGCAGA-TTGAAAATTG
* *
32817599 -AGTCTTATCTTTCTGAGGTAACATGAAAGCAGATTGAAGATTG
1 AAGTCTTATCTTTCTGAGGTAACAAGAAAGCAGATTGAAAATTG
32817642 AAGATCTTATCT
1 AAG-TCTTATCT
32817654 CCCTAAACAG
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
43 37 0.77
44 3 0.06
45 8 0.17
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.32
Consensus pattern (44 bp):
AAGTCTTATCTTTCTGAGGTAACAAGAAAGCAGATTGAAAATTG
Found at i:32817859 original size:177 final size:176
Alignment explanation
Indices: 32817497--32818251 Score: 875
Period size: 177 Copynumber: 4.3 Consensus size: 176
32817487 TGAAGATTGA
* * * *
32817497 AGATCGAAAGA-GGCAAACCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCC-CTAAGTC
1 AGATC-AAAGATGGCGAATCTTATCTCCATGTAT-GGCAATGGAGCAGATTTTAGCCACT-AGCC
* * * * * * * *
32817560 TTATCTTTCTGAGGTAGCAAGAGAGCAAGTTGAAAATTGAGTCTTATCTTTCTGAGGTAACATGA
63 TTATCTCTCTGAGGTAGCAAGAGAGCAGGTAGAGATTTGAGTCTTATCTTCCTGAGGTAGCAAGA
* * *
32817625 AAGCAGATTGAAGATTGAAGATCTTATCTCCCTAAA-CAGTAACAGAGT
128 AAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAAGCAGTAGCAGAGC
32817673 AGATCAAAGATGGCGAATCTTATCTCCATGTACTGGCAATGGAGCAGATTTTAGCCACTAGCCTT
1 AGATCAAAGATGGCGAATCTTATCTCCATGTA-TGGCAATGGAGCAGATTTTAGCCACTAGCCTT
* * * *
32817738 ATCTCTCTGAGGTAGCAAGAGAGCAGGCTAGCGATTTTAGTCTTATCTTCCTGAGGTAGGAAGGA
65 ATCTCTCTGAGGTAGCAAGAGAGCAGG-TAGAGATTTGAGTCTTATCTTCCTGAGGTAGCAAGAA
* *
32817803 AGCAGACTGAAGATTGAAGATCTTATCTCTCT-AAGCAGTAGCATAGC
129 AGCAGACTGAAGATTGAAGATCTTATCTCCCTAAAGCAGTAGCAGAGC
* *
32817850 AGATCAAAGATGGCAAAACTTATCTCCATGTATTGGCAATGGAGCAGATTTTAGCCACTAGCCTT
1 AGATCAAAGATGGCGAATCTTATCTCCATGTA-TGGCAATGGAGCAGATTTTAGCCACTAGCCTT
* * * * *
32817915 ATCCCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA-ATGAGCCTTATCTTTCT-AGGGTAGCAAGA
65 ATCTCTCTGAGGTAGCAAGAGAGCAGGTAG-AGATTTGAGTCTTATCTTCCTGA-GGTAGCAAGA
* * ** * *
32817978 AAGCAGAC-GAAAAATTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGC
128 AAGCAGACTG-AAGATTGAAGATCTTATCTCCCTAAAGCAGTAGCAGAGC
* * *
32818027 AGATCGAAGATGGTGAATCTTATCTCCATGTATCGGC--TGGAGTAGATTTTA-CCACTAGCCTT
1 AGATCAAAGATGGCGAATCTTATCTCCATGTAT-GGCAATGGAGCAGATTTTAGCCACTAGCCTT
* * * * *
32818089 ATCTCTCTGAGGTAGCAAGAGAGCAGGGTAGCGATTTTAGTTTTATCTTCCCGAGGTAGCAAGGA
65 ATCTCTCTGAGGTAGCAAGAGAGCA-GGTAGAGATTTGAGTCTTATCTTCCTGAGGTAGCAAGAA
* * *
32818154 AGCAGACTGAAGATTGAAGATC-TATTTCCCTAAAGTAGTTGCAGAGC
129 AGCAGACTGAAGATTGAAGATCTTATCTCCCTAAAGCAGTAGCAGAGC
** * * *
32818201 AGATTGAGGATGGCGAATCTTATCTCCATATATTGGCAATGGAGCAAATTT
1 AGATCAAAGATGGCGAATCTTATCTCCATGTA-TGGCAATGGAGCAGATTT
32818252 AAGTCATCAG
Statistics
Matches: 494, Mismatches: 68, Indels: 34
0.83 0.11 0.06
Matches are distributed among these distances:
174 87 0.18
175 65 0.13
176 142 0.29
177 200 0.40
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (176 bp):
AGATCAAAGATGGCGAATCTTATCTCCATGTATGGCAATGGAGCAGATTTTAGCCACTAGCCTTA
TCTCTCTGAGGTAGCAAGAGAGCAGGTAGAGATTTGAGTCTTATCTTCCTGAGGTAGCAAGAAAG
CAGACTGAAGATTGAAGATCTTATCTCCCTAAAGCAGTAGCAGAGC
Found at i:32818173 original size:351 final size:352
Alignment explanation
Indices: 32817497--32818254 Score: 1030
Period size: 351 Copynumber: 2.2 Consensus size: 352
32817487 TGAAGATTGA
* * *
32817497 AGATCGAAAGA-GGCAAACCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCCTAAGTCT
1 AGATC-AAAGATGGCAAAACTTATCTCCATGTATTGGCAATGGAGCAGATTTAAGCCCTAAGCCT
** * *
32817561 TATCTTTCTGAGGTAGCAAGAGAGCAAGTTGAAAATTGAGTCTTATCTTTCTGAGGTAACATGAA
65 TATCCCTCTGAGGTAGCAAGAGAGCAAGTTGAAAATTGAGCCTTATCTTTCTGAGGTAACAAGAA
* * * *
32817626 AGCAGATTGAAGATTGAAGATCTTATCTCCCTAAACAGTAACAGAGTAGATCAAAGATGGCGAAT
130 AGCAGATCGAAAATTGAAGATCTTATCTCCCTAAACAGCAACAGAGCAGATCAAAGATGGCGAAT
32817691 CTTATCTCCATGTACTGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCAA
195 CTTATCTCCATGTACTGGC-ATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCAA
* *
32817756 GAGAGCAGGCTAGCGATTTTAGTCTTATCTTCCTGAGGTAGGAAGGAAGCAGACTGAAGATTGAA
259 GAGAGCAGGCTAGCGATTTTAGTCTTATCTTCCCGAGGTAGCAAGGAAGCAGACTGAAGATTGAA
* *
32817821 GATCTTATCTCTCT-AAGCAGTAGCATAGC
324 GATC-TATCTCCCTAAAGCAGTAGCAGAGC
*
32817850 AGATCAAAGATGGCAAAACTTATCTCCATGTATTGGCAATGGAGCAGATTTTAGCCACT-AGCCT
1 AGATCAAAGATGGCAAAACTTATCTCCATGTATTGGCAATGGAGCAGATTTAAGCC-CTAAGCCT
* *
32817914 TATCCCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAA-TGAGCCTTATCTTTCT-AGGGTAGCAAG
65 TATCCCTCTGAGGTAGCAAGAGAGCAAGTTGAA-AATTGAGCCTTATCTTTCTGA-GGTAACAAG
*** * * * *
32817977 AAAGCAGA-CGAAAAATTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCGAAGATGGT
128 AAAGCAGATCG-AAAATTGAAGATCTTATCTCCCT-AAACAGCAACAGAGCAGATCAAAGATGGC
*
32818041 GAATCTTATCTCCATGTA-TCGGC-TGGAGTAGATTTTA-CCACTAGCCTTATCTCTCTGAGGTA
191 GAATCTTATCTCCATGTACT-GGCATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTA
* *
32818103 GCAAGAGAGCAGGGTAGCGATTTTAGTTTTATCTTCCCGAGGTAGCAAGGAAGCAGACTGAAGAT
255 GCAAGAGAGCAGGCTAGCGATTTTAGTCTTATCTTCCCGAGGTAGCAAGGAAGCAGACTGAAGAT
* * *
32818168 TGAAGATCTATTTCCCTAAAGTAGTTGCAGAGC
320 TGAAGATCTATCTCCCTAAAGCAGTAGCAGAGC
** * * * * *
32818201 AGATTGAGGATGGCGAATCTTATCTCCATATATTGGCAATGGAGCAAATTTAAG
1 AGATCAAAGATGGCAAAACTTATCTCCATGTATTGGCAATGGAGCAGATTTAAG
32818255 TCATCAGTCC
Statistics
Matches: 358, Mismatches: 39, Indels: 18
0.86 0.09 0.04
Matches are distributed among these distances:
350 7 0.02
351 152 0.42
352 20 0.06
353 134 0.37
354 45 0.13
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (352 bp):
AGATCAAAGATGGCAAAACTTATCTCCATGTATTGGCAATGGAGCAGATTTAAGCCCTAAGCCTT
ATCCCTCTGAGGTAGCAAGAGAGCAAGTTGAAAATTGAGCCTTATCTTTCTGAGGTAACAAGAAA
GCAGATCGAAAATTGAAGATCTTATCTCCCTAAACAGCAACAGAGCAGATCAAAGATGGCGAATC
TTATCTCCATGTACTGGCATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGA
GAGCAGGCTAGCGATTTTAGTCTTATCTTCCCGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
TCTATCTCCCTAAAGCAGTAGCAGAGC
Found at i:32818425 original size:8 final size:8
Alignment explanation
Indices: 32818414--32818441 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
32818404 CAAAAAAATA
32818414 AAAATAAT
1 AAAATAAT
32818422 AAAATAAT
1 AAAATAAT
32818430 AAAATAAT
1 AAAATAAT
32818438 AAAA
1 AAAA
32818442 CCAAAATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (8 bp):
AAAATAAT
Done.