Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 107 of 144
Found at i:32819602 original size:29 final size:29
Alignment explanation
Indices: 32819570--32819630 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
32819560 TTTTACTTCA
32819570 TTTCAATCTAGTATTTCACCTACATTTGT
1 TTTCAATCTAGTATTTCACCTACATTTGT
32819599 TTTCAATCTAGTATTTCACCTACATTTGT
1 TTTCAATCTAGTATTTCACCTACATTTGT
32819628 TTT
1 TTT
32819631 TCTTTCCTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.23, C:0.20, G:0.07, T:0.51
Consensus pattern (29 bp):
TTTCAATCTAGTATTTCACCTACATTTGT
Found at i:32825283 original size:12 final size:12
Alignment explanation
Indices: 32825266--32825290 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32825256 TTTTGTGTTC
32825266 TTTATTTTATTT
1 TTTATTTTATTT
32825278 TTTATTTTATTT
1 TTTATTTTATTT
32825290 T
1 T
32825291 ATTTTTCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTATTTTATTT
Found at i:32826238 original size:3 final size:3
Alignment explanation
Indices: 32826212--32826712 Score: 145
Period size: 3 Copynumber: 166.0 Consensus size: 3
32826202 TTTCAAATTA
* * * * **
32826212 ATT ATT TTT ATTT ATT ATT GTT ATT ATT ATT ATT ATA ACT ACA ATT
1 ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * *
32826258 ATT ATT ATT ATC ATT ATT ATT ATT ACT ATT ACT CTT ATT AATGT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -AT-T ATT
** * * * *
32826305 ATT CCT ACT ACTT -TCT ATCT ATT ATT ATT A-T CTT ATT -TAA AAT ATT
1 ATT ATT ATT A-TT AT-T AT-T ATT ATT ATT ATT ATT ATT AT-T ATT ATT
* * *
32826351 AAT ATT ATT ATT ATT -TT CCATG ATT ACT ATT ATT ATT A-T ATT ATT
1 ATT ATT ATT ATT ATT ATT --ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * *
32826396 ATT CTT ATT AAT A-C ATT ATT ATT ATGT -TT -TCT ACT -TT ATT ACTT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT AT-T ATT ATT ATT A-TT
* * * * * ** * *
32826440 -TT ATT GTT -TT GTT ACT AAT ATT ATT ATC A-T ATT ATT AGG CTA ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
32826485 AATT -TT A-T ATT ATT ACTT CATT ATAT ATT -TC CTT -TT GCATTT ACTT
1 -ATT ATT ATT ATT ATT A-TT -ATT AT-T ATT ATT ATT ATT --A-TT A-TT
* * * *
32826531 A-T ATT TTT ACTT A-C ATC ATC ATT ATT ATT AATT -TGT ATT ATT ATT
1 ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT -ATT AT-T ATT ATT ATT
* *
32826576 ATT ATT ATT ATT ATT ATT AATT ATT GTT ATT ATT ACT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
32826622 ATT GTT ATT ATT ATCT -TT A-T ATT ACT ATT -TAT ATT AAT A-T ATT
1 ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT
* * *
32826665 ATT ACTT -TT ATT AATGT ACT GTT ATT TTT ATT -TT A-T ATT ATT ATT
1 ATT A-TT ATT ATT -AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32826710 ATT
1 ATT
32826713 GTTTCATCCT
Statistics
Matches: 369, Mismatches: 77, Indels: 104
0.67 0.14 0.19
Matches are distributed among these distances:
2 39 0.11
3 277 0.75
4 47 0.13
5 4 0.01
6 2 0.01
ACGTcount: A:0.30, C:0.08, G:0.03, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:32826403 original size:20 final size:20
Alignment explanation
Indices: 32826380--32826418 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
32826370 ATGATTACTA
* *
32826380 TTATTATTATATTATTATTC
1 TTATTAATACATTATTATTC
32826400 TTATTAATACATTATTATT
1 TTATTAATACATTATTATT
32826419 ATGTTTTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (20 bp):
TTATTAATACATTATTATTC
Found at i:32826662 original size:20 final size:20
Alignment explanation
Indices: 32826639--32826679 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
32826629 TTATTATCTT
32826639 TATATTACTA-TTTATATTAA
1 TATATTACTACTTT-TATTAA
*
32826659 TATATTATTACTTTTATTAA
1 TATATTACTACTTTTATTAA
32826679 T
1 T
32826680 GTACTGTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (20 bp):
TATATTACTACTTTTATTAA
Found at i:32826693 original size:20 final size:20
Alignment explanation
Indices: 32826647--32826709 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 20
32826637 TTTATATTAC
* *
32826647 TATTTATATTAATATATTAT
1 TATTTTTATTAATATACTAT
* * *
32826667 TACTTTTATTAATGTACTGT
1 TATTTTTATTAATATACTAT
* *
32826687 TATTTTTATT-TTATATTAT
1 TATTTTTATTAATATACTAT
32826706 TATT
1 TATT
32826710 ATTGTTTCAT
Statistics
Matches: 33, Mismatches: 10, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
19 9 0.27
20 24 0.73
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.63
Consensus pattern (20 bp):
TATTTTTATTAATATACTAT
Found at i:32826748 original size:23 final size:22
Alignment explanation
Indices: 32826700--32826756 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
32826690 TTTTATTTTA
*
32826700 TATTATTATTATTGTTTCATCCT
1 TATT-TTATTATTGTTTCATCAT
* *
32826723 TATTTTATTTTTGTCTTCATTAT
1 TATTTTATTATTGT-TTCATCAT
*
32826746 TATTGTATTAT
1 TATTTTATTAT
32826757 ATATGCTTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
22 9 0.32
23 19 0.68
ACGTcount: A:0.21, C:0.09, G:0.05, T:0.65
Consensus pattern (22 bp):
TATTTTATTATTGTTTCATCAT
Found at i:32831793 original size:13 final size:13
Alignment explanation
Indices: 32831775--32831800 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32831765 CAAATTCCAT
32831775 AAAAAAAAGAAGA
1 AAAAAAAAGAAGA
32831788 AAAAAAAAGAAGA
1 AAAAAAAAGAAGA
32831801 TTAGGTGCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (13 bp):
AAAAAAAAGAAGA
Found at i:32833828 original size:44 final size:44
Alignment explanation
Indices: 32833780--32834363 Score: 255
Period size: 44 Copynumber: 13.5 Consensus size: 44
32833770 ACAGATCCTA
* *
32833780 TCTCCCTAAGCAGTAATGGAGTAGGCTGAAGATTGTAGATCTTG
1 TCTCCCTAAGCAGTAGTGGAGTAGGATGAAGATTGTAGATCTTG
* **
32833824 TCTCCCTAAGCAGTAGTGGAGCA-GATCGAAGA-TGGCGAATCTTG
1 TCTCCCTAAGCAGTAGTGGAGTAGGAT-GAAGATTGTAG-ATCTTG
* * * ** * * *
32833868 TCTCTCTAAGCAGTAGTGGAGCA-GATTTAAG---CCACCATCCTA
1 TCTCCCTAAGCAGTAGTGGAGTAGGA-TGAAGATTGTA-GATCTTG
* * * * * *
32833910 TCTCTCTAAGCAATAGTAGAGTAGGCTAAAGATTGT-GAATCTTT
1 TCTCCCTAAGCAGTAGTGGAGTAGGATGAAGATTGTAG-ATCTTG
* * * * * *
32833954 TCTCCCTAAGCATTAGCGAAGCA-GATCGAAGATGGCAGATCTTG
1 TCTCCCTAAGCAGTAGTGGAGTAGGAT-GAAGATTGTAGATCTTG
* * * ** * ***
32833998 TCTCTCTAAGCAGCAGTGGAGTA-GATTTAAG---CCACCATCCCA
1 TCTCCCTAAGCAGTAGTGGAGTAGGA-TGAAGATTGTA-GATCTTG
* * * *
32834040 TCTCCATAAGCAATAGTGGAGTAGGCTGAAAATTGTAGATCTTG
1 TCTCCCTAAGCAGTAGTGGAGTAGGATGAAGATTGTAGATCTTG
* *
32834084 TCTCCCTAAGCAGTAGTGGAGTA-GATCAAAGATGGT-GAATCTTG
1 TCTCCCTAAGCAGTAGTGGAGTAGGAT-GAAGATTGTAG-ATCTTG
* * * ** * *
32834128 TCTCTCTAAGCAGTAGTGGAGCA-GATTTAAG---CCACCATC-TA
1 TCTCCCTAAGCAGTAGTGGAGTAGGA-TGAAGATTGTA-GATCTTG
* * *
32834169 TCTCCCTAAGTAGTAGTGGAATAGGCTGAAGATTGTAGATCTTG
1 TCTCCCTAAGCAGTAGTGGAGTAGGATGAAGATTGTAGATCTTG
* * * * *
32834213 TCTCCCTAAGTAGTAGTGGAGCA-GATCAAAGATGGT-GAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGTAGGAT-GAAGATTGTAG-ATCTTG
* ** * * * *
32834257 TCTCCCTAAGTAGTAGTGGAGTA-GATTTAG---GCCACCATCCTA
1 TCTCCCTAAGCAGTAGTGGAGTAGGATGAAGATTG-TA-GATCTTG
* * *
32834299 TCTCCCTAGGCAATAGTGGAGTAGGCTGAAGATTGTAGATCTTG
1 TCTCCCTAAGCAGTAGTGGAGTAGGATGAAGATTGTAGATCTTG
*
32834343 TCTCCCTAAGCTGTAGTGGAG
1 TCTCCCTAAGCAGTAGTGGAG
32834364 CAGATTTAAG
Statistics
Matches: 397, Mismatches: 107, Indels: 72
0.69 0.19 0.12
Matches are distributed among these distances:
40 1 0.00
41 26 0.07
42 82 0.21
43 24 0.06
44 257 0.65
45 6 0.02
46 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.28
Consensus pattern (44 bp):
TCTCCCTAAGCAGTAGTGGAGTAGGATGAAGATTGTAGATCTTG
Found at i:32834007 original size:130 final size:130
Alignment explanation
Indices: 32833774--32834368 Score: 881
Period size: 130 Copynumber: 4.6 Consensus size: 130
32833764 AAATTCACAG
* *
32833774 ATCCTATCTCCCTAAGCAGTAATGGAGTAGGCTGAAGATTGTAGATCTTGTCTCCCTAAGCAGTA
1 ATCCTATCTCCCTAAGCAATAGTGGAGTAGGCTGAAGATTGTAGATCTTGTCTCCCTAAGCAGTA
* *
32833839 GTGGAGCAGATCGAAGATGGCGAATCTTGTCTCTCTAAGCAGTAGTGGAGCAGATTTAAGCCACC
66 GTGGAGCAGATCAAAGATGGTGAATCTTGTCTCTCTAAGCAGTAGTGGAGCAGATTTAAGCCACC
* * * * *
32833904 ATCCTATCTCTCTAAGCAATAGTAGAGTAGGCTAAAGATTGT-GAATCTTTTCTCCCTAAGCATT
1 ATCCTATCTCCCTAAGCAATAGTGGAGTAGGCTGAAGATTGTAG-ATCTTGTCTCCCTAAGCAGT
* * * * * *
32833968 AGCGAAGCAGATCGAAGATGG-CAGATCTTGTCTCTCTAAGCAGCAGTGGAGTAGATTTAAGCCA
65 AGTGGAGCAGATCAAAGATGGTGA-ATCTTGTCTCTCTAAGCAGTAGTGGAGCAGATTTAAGCCA
32834032 CC
129 CC
* * *
32834034 ATCCCATCTCCATAAGCAATAGTGGAGTAGGCTGAAAATTGTAGATCTTGTCTCCCTAAGCAGTA
1 ATCCTATCTCCCTAAGCAATAGTGGAGTAGGCTGAAGATTGTAGATCTTGTCTCCCTAAGCAGTA
*
32834099 GTGGAGTAGATCAAAGATGGTGAATCTTGTCTCTCTAAGCAGTAGTGGAGCAGATTTAAGCCACC
66 GTGGAGCAGATCAAAGATGGTGAATCTTGTCTCTCTAAGCAGTAGTGGAGCAGATTTAAGCCACC
* * * *
32834164 AT-CTATCTCCCTAAGTAGTAGTGGAATAGGCTGAAGATTGTAGATCTTGTCTCCCTAAGTAGTA
1 ATCCTATCTCCCTAAGCAATAGTGGAGTAGGCTGAAGATTGTAGATCTTGTCTCCCTAAGCAGTA
* * * * *
32834228 GTGGAGCAGATCAAAGATGGTGAATCTTATCTCCCTAAGTAGTAGTGGAGTAGATTTAGGCCACC
66 GTGGAGCAGATCAAAGATGGTGAATCTTGTCTCTCTAAGCAGTAGTGGAGCAGATTTAAGCCACC
* *
32834293 ATCCTATCTCCCTAGGCAATAGTGGAGTAGGCTGAAGATTGTAGATCTTGTCTCCCTAAGCTGTA
1 ATCCTATCTCCCTAAGCAATAGTGGAGTAGGCTGAAGATTGTAGATCTTGTCTCCCTAAGCAGTA
32834358 GTGGAGCAGAT
66 GTGGAGCAGAT
32834369 TTAAGCCACC
Statistics
Matches: 414, Mismatches: 46, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
129 118 0.29
130 294 0.71
131 2 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (130 bp):
ATCCTATCTCCCTAAGCAATAGTGGAGTAGGCTGAAGATTGTAGATCTTGTCTCCCTAAGCAGTA
GTGGAGCAGATCAAAGATGGTGAATCTTGTCTCTCTAAGCAGTAGTGGAGCAGATTTAAGCCACC
Found at i:32834341 original size:86 final size:86
Alignment explanation
Indices: 32834251--32834455 Score: 268
Period size: 86 Copynumber: 2.4 Consensus size: 86
32834241 AAGATGGTGA
* * * *
32834251 ATCTTATCTCCCTAAGTAGTAGTGGAGTAGATTTAGGCCACCATCCTATCTCCCTAGGCAATAGT
1 ATCTTATCTCCCTAAGTAGTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCATAAGCAATAGT
* * *
32834316 GGAGTAGGCTGAAGATTGTAG
66 GAAGCAGGATGAAGATTGTAG
* * *
32834337 ATCTTGTCTCCCTAAGCT-GTAGTGGAGCAGATTTAAGCCACCATCCTATCTCTATAAGCACTAG
1 ATCTTATCTCCCTAAG-TAGTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCATAAGCAATAG
*
32834401 TGAAGCATGATGAAGATTGTAG
65 TGAAGCAGGATGAAGATTGTAG
* * *
32834423 ATCTTATCTCCCTGAGCAGCAGTGGAGCAGATT
1 ATCTTATCTCCCTAAGTAGTAGTGGAGCAGATT
32834456 GAAGACGGCG
Statistics
Matches: 102, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
86 101 0.99
87 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (86 bp):
ATCTTATCTCCCTAAGTAGTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCATAAGCAATAGT
GAAGCAGGATGAAGATTGTAG
Found at i:32834460 original size:44 final size:44
Alignment explanation
Indices: 32834411--32835208 Score: 229
Period size: 44 Copynumber: 18.0 Consensus size: 44
32834401 TGAAGCATGA
* *
32834411 TGAAGATTGTAGATCTTATCTCCCTGAGCAGCAGTGGAGCAGAT
1 TGAAGATTGTAGATCTTATCTCCCTGAGTAGCAGTGGAGCAGAC
* ** * *
32834455 TGAAGA-CGGCGAATCTTATCTCTCTGAGGTAGCAAG-GGAGCAGAA
1 TGAAGATTGTAG-ATCTTATCTCCCTGA-GTAGC-AGTGGAGCAGAC
* **** * * *
32834500 TTAAGCCACTAG-CCTTATCTCCCTGAATAGCAGTGGAGCAGGC
1 TGAAGATTGTAGATCTTATCTCCCTGAGTAGCAGTGGAGCAGAC
* * *
32834543 TAAAGACTGTAGATCTTATCTCCCTGAGCAGCAGTGGAGCAGAC
1 TGAAGATTGTAGATCTTATCTCCCTGAGTAGCAGTGGAGCAGAC
* * * *
32834587 CGAAGACATCG-AG-TCTTATCTTCCTGAAGTAGCAAG-GGAGTAGAC
1 TGAAG--ATTGTAGATCTTATCTCCCTG-AGTAGC-AGTGGAGCAGAC
* * * *
32834632 TGAAGATTATAGATCTTGTCTCCTTGAGATAGCAGTGGGGCAGA-
1 TGAAGATTGTAGATCTTATCTCCCTGAG-TAGCAGTGGAGCAGAC
** ** * * * *
32834676 TCGAA-AGCGGCGAATCTTATCTTCCTGAGGTAGAAGGGGAGCAGAT
1 T-GAAGATTGTAG-ATCTTATCTCCCTGA-GTAGCAGTGGAGCAGAC
** **** * * *
32834722 TTTAGCCACTAG-CCTTATCTCCCTTAGGTAGCAAG-GGAGCAGGC
1 TGAAGATTGTAGATCTTATCTCCCTGA-GTAGC-AGTGGAGCAGAC
* * *
32834766 TGAAGATTGTAG-TATTATCTTCCTAAGGTAGCAAG-GGAGCAGAC
1 TGAAGATTGTAGATCTTATCTCCCTGA-GTAGC-AGTGGAGCAGAC
* * *
32834810 TGATGATTGTAGATCTTGTCT-CCTCGAGATAGCAGTGGAGCAGAT
1 TGAAGATTGTAGATCTTATCTCCCT-GAG-TAGCAGTGGAGCAGAC
* * * * * *
32834855 TGAA-AGTGGT-GAATCTTATCTTCTTGAGGTAGTAGGGGAGCAGAT
1 TGAAGA-TTGTAG-ATCTTATCTCCCTGA-GTAGCAGTGGAGCAGAC
** **** * * * *
32834900 TTTAGCCACTAG-CCTTATCTCTCTTAGGTAGCAAG-GGAGCAGGC
1 TGAAGATTGTAGATCTTATCTCCCTGA-GTAGC-AGTGGAGCAGAC
*
32834944 TGAAGATTGTAG-TCTTATCGT-CCTGAGGTATCAAG-GGAGCAGAC
1 TGAAGATTGTAGATCTTATC-TCCCTGA-GTAGC-AGTGGAGCAGAC
* * * * *
32834988 TGATGATTGTAGATCTTATTTCCTCAAT-A-TAGTAGTGGGGCAGAT
1 TGAAGATTGTAGATCTTATCTCC-C--TGAGTAGCAGTGGAGCAGAC
* *
32835033 TGAAAGCCA-TG-A-ATCTTATCTTCCTGAGGTAGCAGTGGAGCAGAT
1 TG-AAG--ATTGTAGATCTTATCTCCCTGA-GTAGCAGTGGAGCAGAC
** **** * *
32835078 TTTAGCCACTAG-CCTTATCTCCCTAAGGTAGCAAG-GGAGCA-AGC
1 TGAAGATTGTAGATCTTATCTCCCTGA-GTAGC-AGTGGAGCAGA-C
* *
32835122 TGAAGATTATAG-TCTTATCTTCCTGAAGTAGCAAG-GGAGCAGAC
1 TGAAGATTGTAGATCTTATCTCCCTG-AGTAGC-AGTGGAGCAGAC
* * * * *
32835166 TGATGATT-CAGATTTTGTCT-CCTCGAGATAGCAGTGGGGCAGA
1 TGAAGATTGTAGATCTTATCTCCCT-GAG-TAGCAGTGGAGCAGA
32835209 TCGAAAGTGA
Statistics
Matches: 553, Mismatches: 146, Indels: 110
0.68 0.18 0.14
Matches are distributed among these distances:
42 3 0.01
43 34 0.06
44 307 0.56
45 186 0.34
46 18 0.03
47 3 0.01
48 2 0.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (44 bp):
TGAAGATTGTAGATCTTATCTCCCTGAGTAGCAGTGGAGCAGAC
Found at i:32834694 original size:90 final size:89
Alignment explanation
Indices: 32834513--32834720 Score: 217
Period size: 90 Copynumber: 2.3 Consensus size: 89
32834503 AGCCACTAGC
* * *
32834513 CTTATCTCCCTGAA-TAGC-AGTGGAGCAGGCTAAAGACTGTAGATCTTATCTCCCTGAGCAGCA
1 CTTATCTTCCTGAAGTAGCAAG-GGAGCAGACTAAAGACTATAGATCTTATCTCCCTGAGCAGCA
* *
32834576 GTGGAGCAGACCGAAGACATCGAGT
65 GTGGAGCAGACCGAAGACAGCGAAT
* * * * * *
32834601 CTTATCTTCCTGAAGTAGCAAGGGAGTAGACTGAAGATTATAGATCTTGTCTCCTTGAGATAGCA
1 CTTATCTTCCTGAAGTAGCAAGGGAGCAGACTAAAGACTATAGATCTTATCTCCCTGAG-CAGCA
* * *
32834666 GTGGGGCAGATCGAA-AGCGGCGAAT
65 GTGGAGCAGACCGAAGA-CAGCGAAT
*
32834691 CTTATCTTCCTGAGGTAG-AAGGGGAGCAGA
1 CTTATCTTCCTGAAGTAGCAA-GGGAGCAGA
32834721 TTTTAGCCAC
Statistics
Matches: 99, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
88 13 0.13
89 37 0.37
90 49 0.49
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (89 bp):
CTTATCTTCCTGAAGTAGCAAGGGAGCAGACTAAAGACTATAGATCTTATCTCCCTGAGCAGCAG
TGGAGCAGACCGAAGACAGCGAAT
Found at i:32834812 original size:178 final size:178
Alignment explanation
Indices: 32834598--32835277 Score: 997
Period size: 178 Copynumber: 3.8 Consensus size: 178
32834588 GAAGACATCG
* * * *
32834598 AGTCTTATCTTCCTGAAGTAGCAAGGGAGTAGACTGAAGATTATAGATCTTGTCTCCTTGAGATA
1 AGTCTTATCTTCCTGAAGTAGCAAGGGAGCAGACTGATGATTGTAGATCTTGTCTCCTCGAGATA
* *
32834663 GCAGTGGGGCAGATCGAAAGCGGCGAATCTTATCTTCCTGAGGTAGAAGGGGAGCAGATTTTAGC
66 GCAGTGGGGCAGATCGAAAGCGACGAATCTTATCTTCCTGAGGTAGCAGGGGAGCAGATTTTAGC
32834728 CACTAGCCTTATCTCCCTTAGGTAGCAAGGGAGCAGGCTGAAGATTGT
131 CACTAGCCTTATCTCCCTTAGGTAGCAAGGGAGCAGGCTGAAGATTGT
*
32834776 AGTATTATCTTCCT-AAGGTAGCAAGGGAGCAGACTGATGATTGTAGATCTTGTCTCCTCGAGAT
1 AGTCTTATCTTCCTGAA-GTAGCAAGGGAGCAGACTGATGATTGTAGATCTTGTCTCCTCGAGAT
* * * ** * *
32834840 AGCAGTGGAGCAGATTGAAAGTGGTGAATCTTATCTTCTTGAGGTAGTAGGGGAGCAGATTTTAG
65 AGCAGTGGGGCAGATCGAAAGCGACGAATCTTATCTTCCTGAGGTAGCAGGGGAGCAGATTTTAG
*
32834905 CCACTAGCCTTATCTCTCTTAGGTAGCAAGGGAGCAGGCTGAAGATTGT
130 CCACTAGCCTTATCTCCCTTAGGTAGCAAGGGAGCAGGCTGAAGATTGT
* * * * * * *
32834954 AGTCTTATCGTCCTGAGGTATCAAGGGAGCAGACTGATGATTGTAGATCTTATTTCCTCAATATA
1 AGTCTTATCTTCCTGAAGTAGCAAGGGAGCAGACTGATGATTGTAGATCTTGTCTCCTCGAGATA
* * * * *
32835019 GTAGTGGGGCAGATTGAAAGCCATGAATCTTATCTTCCTGAGGTAGCAGTGGAGCAGATTTTAGC
66 GCAGTGGGGCAGATCGAAAGCGACGAATCTTATCTTCCTGAGGTAGCAGGGGAGCAGATTTTAGC
* * *
32835084 CACTAGCCTTATCTCCCTAAGGTAGCAAGGGAGCAAGCTGAAGATTAT
131 CACTAGCCTTATCTCCCTTAGGTAGCAAGGGAGCAGGCTGAAGATTGT
* *
32835132 AGTCTTATCTTCCTGAAGTAGCAAGGGAGCAGACTGATGATT-CAGATTTTGTCTCCTCGAGATA
1 AGTCTTATCTTCCTGAAGTAGCAAGGGAGCAGACTGATGATTGTAGATCTTGTCTCCTCGAGATA
* * *
32835196 GCAGTGGGGCAGATCGAAAGTGACAAATCTTATCTTCCCGAGGTA-CAGGGGAGCAGATTTTAGC
66 GCAGTGGGGCAGATCGAAAGCGACGAATCTTATCTTCCTGAGGTAGCAGGGGAGCAGATTTTAGC
* *
32835260 CACCAACCTTATCTCCCT
131 CACTAGCCTTATCTCCCT
32835278 AAAGTTTCAG
Statistics
Matches: 449, Mismatches: 51, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
176 34 0.08
177 56 0.12
178 358 0.80
179 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (178 bp):
AGTCTTATCTTCCTGAAGTAGCAAGGGAGCAGACTGATGATTGTAGATCTTGTCTCCTCGAGATA
GCAGTGGGGCAGATCGAAAGCGACGAATCTTATCTTCCTGAGGTAGCAGGGGAGCAGATTTTAGC
CACTAGCCTTATCTCCCTTAGGTAGCAAGGGAGCAGGCTGAAGATTGT
Found at i:32835467 original size:44 final size:44
Alignment explanation
Indices: 32835396--32835555 Score: 117
Period size: 44 Copynumber: 3.6 Consensus size: 44
32835386 AAATTACAAG
* * * **
32835396 TCTTATCCCCCTAAAGTTGAAATGGAGCAGACTGATGA-TACCAA
1 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGA-GACTACCAA
* * *
32835440 TCTTATCTCCCTGTAGTTGCAGCGGAGCAGATTGAGACTACTAA
1 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAGACTACCAA
* ** * * *
32835484 TTTTATCTCTTTGAAGTTGCAGCGGAGTAGATTGA-AGCTACTAA
1 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAGA-CTACCAA
* * * * *
32835528 TCCTATTTCCATGAAGTTGTAGTGGAGC
1 TCTTATCTCCCTGAAGTTGCAGCGGAGC
32835556 GGATTAAGGT
Statistics
Matches: 93, Mismatches: 21, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
43 3 0.03
44 90 0.97
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAGACTACCAA
Found at i:32840106 original size:46 final size:46
Alignment explanation
Indices: 32840056--32840231 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
32840046 TGGTTGAGCA
32840056 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
** * * * *
32840102 TCCGAACTCGTTGAGTTGAGTATGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
32840147 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
32840195 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32840232 GCGAGTTACA
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.58
47 27 0.26
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:32840212 original size:93 final size:93
Alignment explanation
Indices: 32840053--32840224 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
32840043 GGATGGTTGA
* *
32840053 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCGTTGAGT
*
32840118 TGAGTATGAGTTCGTGAAATGTAACTAG
66 TGAGTACGAGTTCGTGAAATGTAACTAG
*
32840146 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCGTTGAGT
*
32840211 TGAGTCCGAGTTCG
66 TGAGTACGAGTTCG
32840225 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTACGAGTTCGTGAAATGTAACTAG
Found at i:32843194 original size:15 final size:15
Alignment explanation
Indices: 32843155--32843234 Score: 74
Period size: 15 Copynumber: 5.4 Consensus size: 15
32843145 GTATCTTGGG
* *
32843155 TTTCTTTATCCTGAA
1 TTTCTTTATTCTGGA
*
32843170 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
32843185 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
32843200 TTTCTCTATGT-TGGA
1 TTTCTTTAT-TCTGGA
*
32843215 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
32843229 TTTCTT
1 TTTCTT
32843235 GTTATCTTTG
Statistics
Matches: 52, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
14 9 0.17
15 42 0.81
16 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:32847010 original size:15 final size:15
Alignment explanation
Indices: 32846954--32847013 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 15
32846944 TAAAGATAAG
*
32846954 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
*
32846968 AAGAAATTCACG-ATA
1 AAGAAATCCA-GAATA
*
32846983 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
32846998 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
32847013 A
1 A
32847014 TAAAACCCAA
Statistics
Matches: 36, Mismatches: 5, Indels: 9
0.72 0.10 0.18
Matches are distributed among these distances:
14 10 0.28
15 23 0.64
16 3 0.08
ACGTcount: A:0.60, C:0.15, G:0.13, T:0.12
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:32849439 original size:40 final size:40
Alignment explanation
Indices: 32849395--32849582 Score: 313
Period size: 40 Copynumber: 4.7 Consensus size: 40
32849385 GCAAACACAT
* * *
32849395 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
32849435 TTGCCTTCGGGTCTTAGCCCAGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
32849475 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
32849515 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
32849555 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
32849583 TCCAATGCTC
Statistics
Matches: 140, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:32853458 original size:15 final size:16
Alignment explanation
Indices: 32853427--32853459 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
32853417 TGTAACCTTT
32853427 AACTTAATTAACATTTA
1 AACTTAATT-ACATTTA
32853444 AACTTAATT-CATTTA
1 AACTTAATTACATTTA
32853459 A
1 A
32853460 TTGCTTACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.42
Consensus pattern (16 bp):
AACTTAATTACATTTA
Found at i:32854673 original size:50 final size:50
Alignment explanation
Indices: 32854592--32854693 Score: 188
Period size: 50 Copynumber: 2.0 Consensus size: 50
32854582 GCTTTGGGAC
32854592 AAACCACTTGTACTTAACTATTCATTCAATTAATAAAATTATCAAATAAA
1 AAACCACTTGTACTTAACTATTCATTCAATTAATAAAATTATCAAATAAA
32854642 AAACCACTTGTACTTAACTATTCATAT-AATTAATAAAATTATCAAATAAA
1 AAACCACTTGTACTTAACTATTCAT-TCAATTAATAAAATTATCAAATAAA
32854692 AA
1 AA
32854694 TTCAATATAA
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
50 50 0.98
51 1 0.02
ACGTcount: A:0.50, C:0.15, G:0.02, T:0.33
Consensus pattern (50 bp):
AAACCACTTGTACTTAACTATTCATTCAATTAATAAAATTATCAAATAAA
Found at i:32877279 original size:130 final size:130
Alignment explanation
Indices: 32877132--32877387 Score: 415
Period size: 130 Copynumber: 2.0 Consensus size: 130
32877122 AGGAAAATGC
* * * * *
32877132 GAGTAGATAAATTTAGAGAAAGGAAAAGTAAGTACATAAATTGAAAGTACAATTGATAGAGAAAG
1 GAGTAGATAAATGTAGAGAAAGGAAAAGCAAGTACATAAATTAAAAGTACAACTAATAGAGAAAG
32877197 AAAAATTTAGTAGATAAAGAATACAAAAGAGGTATAGCCTTATTAGT-AGCCAAGTAGGCAGTCG
66 AAAAATTTAGTAGATAAAGAATACAAAAGAGGTATAGCCTTATTAGTCA-CCAAGTAGGCAGTCG
32877261 A
130 A
* *
32877262 GAGTAGATAAATGTAGAGAAAGGAAAAGCAAGTGCATACATTAAAAGTACAACTAATAGAGAAAG
1 GAGTAGATAAATGTAGAGAAAGGAAAAGCAAGTACATAAATTAAAAGTACAACTAATAGAGAAAG
* *
32877327 AAAATTTTATTAGATAAAGAATACAAAAGAGGTATAGCCTTATTAGTCACCAAGTAGGCAG
66 AAAAATTTAGTAGATAAAGAATACAAAAGAGGTATAGCCTTATTAGTCACCAAGTAGGCAG
32877388 CCGCGTCAAT
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
130 115 0.99
131 1 0.01
ACGTcount: A:0.48, C:0.08, G:0.21, T:0.22
Consensus pattern (130 bp):
GAGTAGATAAATGTAGAGAAAGGAAAAGCAAGTACATAAATTAAAAGTACAACTAATAGAGAAAG
AAAAATTTAGTAGATAAAGAATACAAAAGAGGTATAGCCTTATTAGTCACCAAGTAGGCAGTCGA
Found at i:32883452 original size:22 final size:22
Alignment explanation
Indices: 32883398--32883452 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
32883388 GCTGGTGGTG
* * *
32883398 TGGTGGTGCTAAGGTGGTTGAA
1 TGGTGGTGATTAGATGGTTGAA
* *
32883420 TGGTAGTGATTAGATGGTTGTA
1 TGGTGGTGATTAGATGGTTGAA
32883442 TGGTGGTGATT
1 TGGTGGTGATT
32883453 CGAATTGAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.18, C:0.02, G:0.42, T:0.38
Consensus pattern (22 bp):
TGGTGGTGATTAGATGGTTGAA
Found at i:32892878 original size:48 final size:48
Alignment explanation
Indices: 32892833--32892949 Score: 137
Period size: 48 Copynumber: 2.4 Consensus size: 48
32892823 CCAATATAAG
* * *
32892833 TGTGGACGAAGCCACCAAATTCGCAGGCAGGCTACCAGTACATATAGT
1 TGTGGACAAAGCCACCAAATTCGCAGACAAGCTACCAGTACATATAGT
* ** *
32892881 TGTGGACAAAGCCACCAAATTTGCAGACAAGCTACCAAAACATGTAGGT
1 TGTGGACAAAGCCACCAAATTCGCAGACAAGCTACCAGTACATATA-GT
* *
32892930 TGTGGA-AAAACCACCCAATT
1 TGTGGACAAAGCCACCAAATT
32892950 TGCAAATTAT
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
48 51 0.86
49 8 0.14
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.19
Consensus pattern (48 bp):
TGTGGACAAAGCCACCAAATTCGCAGACAAGCTACCAGTACATATAGT
Found at i:32893900 original size:22 final size:21
Alignment explanation
Indices: 32893875--32893926 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
32893865 GGTGGTGCTA
32893875 AGGTGGTTGAATGGTAGTGATT
1 AGGTGGTTGAATGGTAGTGA-T
* * *
32893897 AGGTGGTCGTATGGTGGTGAT
1 AGGTGGTTGAATGGTAGTGAT
32893918 ATGGTGGTT
1 A-GGTGGTT
32893927 TTTAAGTGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 2 0.08
22 23 0.92
ACGTcount: A:0.17, C:0.02, G:0.44, T:0.37
Consensus pattern (21 bp):
AGGTGGTTGAATGGTAGTGAT
Found at i:32898619 original size:95 final size:95
Alignment explanation
Indices: 32898456--32898670 Score: 351
Period size: 95 Copynumber: 2.3 Consensus size: 95
32898446 ATTAAATCGA
* *
32898456 TTTAATTGTTTGAATTGACATAGGGATATGTACAAAAGATTATTTCGATTTAATAAGTATGTATG
1 TTTAATCGGTTGAATTGACATAGGGATATGTACAAAAGATTATTTCGATTTAATAAGTATGTATG
*
32898521 TGCAATAATATATTTTCCTAGTAAGATGTG
66 TGCAATAATATATTTGCCTAGTAAGATGTG
*
32898551 TTTAATGGGTTGAATTGACATAGGGATATGTA-AAAGAGATTATTTCGATTTAATAAGTATGTAT
1 TTTAATCGGTTGAATTGACATAGGGATATGTACAAA-AGATTATTTCGATTTAATAAGTATGTAT
* *
32898615 GTGCAATAATATATTTGCCTATTAAGATTTG
65 GTGCAATAATATATTTGCCTAGTAAGATGTG
*
32898646 TTTAATCAGTTGAATTGACATAGGG
1 TTTAATCGGTTGAATTGACATAGGG
32898671 TAGGTGAGAG
Statistics
Matches: 112, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
94 3 0.03
95 109 0.97
ACGTcount: A:0.34, C:0.06, G:0.20, T:0.40
Consensus pattern (95 bp):
TTTAATCGGTTGAATTGACATAGGGATATGTACAAAAGATTATTTCGATTTAATAAGTATGTATG
TGCAATAATATATTTGCCTAGTAAGATGTG
Found at i:32914061 original size:27 final size:27
Alignment explanation
Indices: 32914030--32914207 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32914020 TAAATTGTAC
32914030 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32914057 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32914083 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32914111 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32914139 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32914166 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32914193 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32914208 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32914144 original size:82 final size:81
Alignment explanation
Indices: 32914031--32914186 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32914021 AAATTGTACA
* *
32914031 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32914095 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32914112 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
32914177 TGCGAGTTGA
65 TGCGAATTGA
32914187 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32914198 original size:82 final size:81
Alignment explanation
Indices: 32914027--32914207 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
32914017 GATTAAATTG
* *
32914027 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
32914092 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
32914108 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
32914172 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32914190 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32914208 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32922124 original size:27 final size:27
Alignment explanation
Indices: 32922093--32922270 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32922083 TAAATTGTAC
32922093 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32922120 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32922146 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32922174 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32922202 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32922229 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32922256 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32922271 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32922207 original size:82 final size:81
Alignment explanation
Indices: 32922094--32922249 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32922084 AAATTGTACA
* *
32922094 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32922158 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32922175 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
32922240 TGCGAGTTGA
65 TGCGAATTGA
32922250 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32922261 original size:82 final size:81
Alignment explanation
Indices: 32922090--32922270 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
32922080 GATTAAATTG
* *
32922090 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
32922155 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
32922171 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
32922235 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32922253 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32922271 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32925261 original size:19 final size:19
Alignment explanation
Indices: 32925239--32925276 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
32925229 TCAATCATCC
32925239 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
32925258 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
32925277 ACTCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:32929806 original size:19 final size:19
Alignment explanation
Indices: 32929784--32929821 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
32929774 TCAATCATCC
32929784 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
32929803 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
32929822 ACTCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:32932868 original size:79 final size:79
Alignment explanation
Indices: 32932737--32932969 Score: 376
Period size: 79 Copynumber: 2.9 Consensus size: 79
32932727 CATCTCCCAG
* *
32932737 CTGATCGGTCAGCAGCACCCCGCGCGCGCCCACACTAGGCTTGCTCAATGATCCACACGCTGCTC
1 CTGATCGGTCAGCAGCACCCCGCGTGCGCCCACACTAGGCTTGCTCAATGATCCGCACGCTGCTC
32932802 ACATACATCCCCTA
66 ACATACATCCCCTA
* * * *
32932816 CTGATCGGTCAGCAACACCCCGCGTGCGCCCACACTAGGCTTGCTCAATGATCCGTATGTTGCTC
1 CTGATCGGTCAGCAGCACCCCGCGTGCGCCCACACTAGGCTTGCTCAATGATCCGCACGCTGCTC
* *
32932881 ACATACATCCCTTG
66 ACATACATCCCCTA
* *
32932895 CTGATCGGTCAGTAGCACCCCGCGTGCGCCCACATTAGGCTTGCTCAATGATCCGCACGCTGCTC
1 CTGATCGGTCAGCAGCACCCCGCGTGCGCCCACACTAGGCTTGCTCAATGATCCGCACGCTGCTC
32932960 ACATACATCC
66 ACATACATCC
32932970 TCTGCTGTAC
Statistics
Matches: 140, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
79 140 1.00
ACGTcount: A:0.21, C:0.38, G:0.20, T:0.21
Consensus pattern (79 bp):
CTGATCGGTCAGCAGCACCCCGCGTGCGCCCACACTAGGCTTGCTCAATGATCCGCACGCTGCTC
ACATACATCCCCTA
Found at i:32936353 original size:21 final size:20
Alignment explanation
Indices: 32936308--32936353 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
32936298 TTGTTGGAAT
32936308 GGTT-AATTTAATCAATTTA
1 GGTTGAATTTAATCAATTTA
*
32936327 GCTTGAATTTAATTC-ATGTTA
1 GGTTGAATTTAA-TCAAT-TTA
32936348 GGTTGA
1 GGTTGA
32936354 TTTCATTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.30, C:0.07, G:0.17, T:0.46
Consensus pattern (20 bp):
GGTTGAATTTAATCAATTTA
Found at i:32947148 original size:25 final size:25
Alignment explanation
Indices: 32947120--32947167 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
32947110 GTGTACATGT
32947120 TAAGTAGATATTTTAATGAGTTTAA
1 TAAGTAGATATTTTAATGAGTTTAA
***
32947145 TAAGTTTCTATTTTAATGAGTTT
1 TAAGTAGATATTTTAATGAGTTT
32947168 GTTGACTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.02, G:0.15, T:0.50
Consensus pattern (25 bp):
TAAGTAGATATTTTAATGAGTTTAA
Found at i:32949561 original size:39 final size:39
Alignment explanation
Indices: 32949440--32949578 Score: 140
Period size: 39 Copynumber: 3.5 Consensus size: 39
32949430 TGTGTGAATT
* ** * *
32949440 TACTTCGGTACCTCTG-ATGCACATATGTGCCCCTGTTTG
1 TACTTTGGTACC-CTGAATGCACATACATGCCCTTATTTG
* *
32949479 TACTTTGGTACCCTTG-ATGCACATACATGCCCTTGTTTC
1 TACTTTGGTACCC-TGAATGCACATACATGCCCTTATTTG
*
32949518 TACTTTGGTACTCCTGAATGCACATACATGCTC-TATTTG
1 TACTTTGGTAC-CCTGAATGCACATACATGCCCTTATTTG
*
32949557 TACTTCGGTAACCCTGAATGCA
1 TACTTTGGT-ACCCTGAATGCA
32949579 TTATAATGTT
Statistics
Matches: 87, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
38 1 0.01
39 67 0.77
40 19 0.22
ACGTcount: A:0.20, C:0.27, G:0.17, T:0.36
Consensus pattern (39 bp):
TACTTTGGTACCCTGAATGCACATACATGCCCTTATTTG
Found at i:32955055 original size:29 final size:29
Alignment explanation
Indices: 32954986--32955056 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
32954976 AAGTTCTTTT
* * *
32954986 TGGCCACTAAACTTTTAAATTTTTTAAAA
1 TGGCCACTCAACTTTTAAAATTTTCAAAA
**
32955015 TGATCACTCAACTTTTAAAATTTTCAAAA
1 TGGCCACTCAACTTTTAAAATTTTCAAAA
*
32955044 TGGCCACCCAACT
1 TGGCCACTCAACT
32955057 AATCAAGTTT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.37, C:0.21, G:0.07, T:0.35
Consensus pattern (29 bp):
TGGCCACTCAACTTTTAAAATTTTCAAAA
Found at i:32955355 original size:8 final size:8
Alignment explanation
Indices: 32955342--32955407 Score: 80
Period size: 8 Copynumber: 7.9 Consensus size: 8
32955332 CTTTGTATTT
32955342 TATAAAAA
1 TATAAAAA
32955350 TATAAAAA
1 TATAAAAA
32955358 TATATTAAATA
1 TATA--AAA-A
32955369 TATAAAAA
1 TATAAAAA
32955377 TATAAAAA
1 TATAAAAA
*
32955385 TATAATAAT
1 TATAA-AAA
32955394 TATAAAAA
1 TATAAAAA
32955402 TA-AAAA
1 TATAAAA
32955408 GTAAATCAGA
Statistics
Matches: 52, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
7 4 0.08
8 30 0.58
9 10 0.19
10 3 0.06
11 5 0.10
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (8 bp):
TATAAAAA
Found at i:32955370 original size:25 final size:27
Alignment explanation
Indices: 32955342--32955407 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 27
32955332 CTTTGTATTT
*
32955342 TATAAAAATATAAAAATATATTAAATA
1 TATAAAAATATAAAAATATAATAAATA
32955369 TATAAAAATATAAAAATATAAT-AAT-
1 TATAAAAATATAAAAATATAATAAATA
32955394 TATAAAAATA-AAAA
1 TATAAAAATATAAAA
32955408 GTAAATCAGA
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
24 4 0.11
25 10 0.26
26 3 0.08
27 21 0.55
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (27 bp):
TATAAAAATATAAAAATATAATAAATA
Found at i:32955371 original size:19 final size:19
Alignment explanation
Indices: 32955344--32955407 Score: 68
Period size: 17 Copynumber: 3.7 Consensus size: 19
32955334 TTGTATTTTA
32955344 TAAAAATATAAAAATATAT
1 TAAAAATATAAAAATATAT
*
32955363 TAAATATAT-AAAA-ATA-
1 TAAAAATATAAAAATATAT
*
32955379 TAAAAATATAATAAT-TA-
1 TAAAAATATAAAAATATAT
32955396 TAAAAATA-AAAA
1 TAAAAATATAAAA
32955408 GTAAATCAGA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
16 11 0.28
17 16 0.41
18 4 0.10
19 8 0.21
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
TAAAAATATAAAAATATAT
Found at i:32964824 original size:27 final size:28
Alignment explanation
Indices: 32964783--32964849 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
32964773 ATGCATGTTT
* *
32964783 TTAATATGTCATAGTT-AGTACAT-ATCA
1 TTAATGTGTCTTAGTTCAGTACATCA-CA
* *
32964810 TTAATGTGTCTTAGTTCATTACATCACT
1 TTAATGTGTCTTAGTTCAGTACATCACA
32964838 TTAATGTGTCTT
1 TTAATGTGTCTT
32964850 GTTGCTGCCG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 14 0.41
28 19 0.56
29 1 0.03
ACGTcount: A:0.28, C:0.13, G:0.12, T:0.46
Consensus pattern (28 bp):
TTAATGTGTCTTAGTTCAGTACATCACA
Found at i:32966152 original size:20 final size:22
Alignment explanation
Indices: 32966129--32966168 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
32966119 CCCAAAATCA
32966129 AAAAAAATT-T-AAAAAAAAGG
1 AAAAAAATTATGAAAAAAAAGG
32966149 AAAAAAATTATGAAAAAAAA
1 AAAAAAATTATGAAAAAAAA
32966169 TTGTGTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.50
21 1 0.06
22 8 0.44
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (22 bp):
AAAAAAATTATGAAAAAAAAGG
Found at i:32966189 original size:37 final size:37
Alignment explanation
Indices: 32966137--32966219 Score: 114
Period size: 37 Copynumber: 2.2 Consensus size: 37
32966127 CAAAAAAAAT
* *
32966137 TTAAAAAAAAGGAAAAAAATTATGAAAAAAAAT-TGTG
1 TTAAAAAAAAAG-AAAAAAGTATGAAAAAAAATATGTG
* *
32966174 TTAAAAAAAAAGAAAAAAGTGTGAAAAAAATTATGTG
1 TTAAAAAAAAAGAAAAAAGTATGAAAAAAAATATGTG
32966211 TTAAAAAAA
1 TTAAAAAAA
32966220 GTGTGTTGTG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
36 17 0.41
37 24 0.59
ACGTcount: A:0.65, C:0.00, G:0.13, T:0.22
Consensus pattern (37 bp):
TTAAAAAAAAAGAAAAAAGTATGAAAAAAAATATGTG
Found at i:32967314 original size:6 final size:6
Alignment explanation
Indices: 32967300--32967373 Score: 57
Period size: 6 Copynumber: 13.0 Consensus size: 6
32967290 AAAAGAAATT
* * * **
32967300 AAAAG- AAAAGA AAAAGA AAAAGA GAATGA AAGAGA AATTG- -AAAG-
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA
* *
32967344 AAAAGA AAAAGA AAATGA AGAAGA AAAAGA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA
32967374 GGAAAGCGAG
Statistics
Matches: 53, Mismatches: 13, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
4 2 0.04
5 9 0.17
6 42 0.79
ACGTcount: A:0.73, C:0.00, G:0.22, T:0.05
Consensus pattern (6 bp):
AAAAGA
Found at i:32967330 original size:39 final size:40
Alignment explanation
Indices: 32967277--32967373 Score: 135
Period size: 39 Copynumber: 2.5 Consensus size: 40
32967267 TGTGAGCATG
* *
32967277 AAAAGAACATTGAAAAAGAAATTAAAAGAAAAGAAAAAGA
1 AAAAGAAGAATGAAAAAGAAATTAAAAGAAAAGAAAAAGA
* *
32967317 AAAAG-AGAATGAAAGAGAAATTGAAAGAAAAGAAAAAGA
1 AAAAGAAGAATGAAAAAGAAATTAAAAGAAAAGAAAAAGA
*
32967356 AAATGAAGAA-GAAAAAGA
1 AAAAGAAGAATGAAAAAGA
32967374 GGAAAGCGAG
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
39 41 0.82
40 9 0.18
ACGTcount: A:0.71, C:0.01, G:0.20, T:0.08
Consensus pattern (40 bp):
AAAAGAAGAATGAAAAAGAAATTAAAAGAAAAGAAAAAGA
Found at i:32971471 original size:23 final size:23
Alignment explanation
Indices: 32971437--32971487 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
32971427 CTATCTAGTT
*
32971437 TGTAATATCCCGAAAATTACTAC
1 TGTAATACCCCGAAAATTACTAC
32971460 TGTAATACCCCGAAAATTACTAC
1 TGTAATACCCCGAAAATTACTAC
*
32971483 AGTAA
1 TGTAA
32971488 GAAAGTAGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.27
Consensus pattern (23 bp):
TGTAATACCCCGAAAATTACTAC
Found at i:32980363 original size:116 final size:116
Alignment explanation
Indices: 32980159--32980388 Score: 372
Period size: 116 Copynumber: 2.0 Consensus size: 116
32980149 TCATTTGGCA
* *
32980159 TTTTTGGTTAAGTTGCAGAAAATGCATGATGTTTTTCATGTTTCGATGCTCAGGAGATATCATTC
1 TTTTTGGTTAAGTTGCAGAAAATGCATGATGTTTTTCATCTTTCGATGCTCAAGAGATATCATTC
*
32980224 AGATCCGTCTCATGTTATTTCAATGGAAGAACTTCAAATTCTTCCTGATTT
66 AGATCCGTCTCATGTTATTTCAATGGAAGAAATTCAAATTCTTCCTGATTT
* * * *
32980275 TTTTTGGTTGAGTTGCAGAAAATGCATGCTTTTTTTCATACTTT-GGTGCTCAAGAGATATCATT
1 TTTTTGGTTAAGTTGCAGAAAATGCATGATGTTTTTCAT-CTTTCGATGCTCAAGAGATATCATT
*
32980339 CAGATCCGTCTCATGTTATTTCAATGGAAGAAATTGAAATTCTTCCTGAT
65 CAGATCCGTCTCATGTTATTTCAATGGAAGAAATTCAAATTCTTCCTGAT
32980389 CTGTCATACG
Statistics
Matches: 105, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
116 102 0.97
117 3 0.03
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.40
Consensus pattern (116 bp):
TTTTTGGTTAAGTTGCAGAAAATGCATGATGTTTTTCATCTTTCGATGCTCAAGAGATATCATTC
AGATCCGTCTCATGTTATTTCAATGGAAGAAATTCAAATTCTTCCTGATTT
Found at i:32980908 original size:22 final size:23
Alignment explanation
Indices: 32980883--32980933 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
32980873 GATAAATTAT
32980883 TTATAAATATAA-GTT-TTATATG
1 TTATAAAT-TAATGTTATTATATG
32980905 TTAT-AATTAATGTTATTATATG
1 TTATAAATTAATGTTATTATATG
32980927 TTATAAA
1 TTATAAA
32980934 AACATACTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 3 0.12
21 6 0.23
22 15 0.58
23 2 0.08
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (23 bp):
TTATAAATTAATGTTATTATATG
Found at i:32982015 original size:56 final size:56
Alignment explanation
Indices: 32981929--32982104 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
32981919 ACAAGGGATG
*
32981929 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
32981985 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
*
32982041 ATGGGCAAAACATGTCATCAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
32982097 ATGGGCAA
1 ATGGGCAA
32982105 TAAACTAATA
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 118 1.00
ACGTcount: A:0.45, C:0.10, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:32991986 original size:27 final size:26
Alignment explanation
Indices: 32991955--32992132 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
32991945 TAAATTGTAC
32991955 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
32991982 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
32992008 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
32992036 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
32992064 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
32992091 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
32992118 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32992133 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 103 0.80
28 25 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:32992071 original size:82 final size:81
Alignment explanation
Indices: 32991956--32992111 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
32991946 AAATTGTACA
* *
32991956 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32992020 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
32992037 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
32992102 TGCGAGTTGA
65 TGCGAATTGA
32992112 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32992123 original size:82 final size:81
Alignment explanation
Indices: 32991952--32992132 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
32991942 GATTAAATTG
* *
32991952 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
32992017 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
32992033 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
32992097 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32992115 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32992133 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32992143 original size:27 final size:27
Alignment explanation
Indices: 32992037--32992143 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
32992027 TGACCATGCG
* * * *
32992037 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
32992065 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
32992092 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
32992119 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
32992144 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:33003357 original size:25 final size:25
Alignment explanation
Indices: 33003245--33003354 Score: 152
Period size: 25 Copynumber: 4.4 Consensus size: 25
33003235 ACACCATAGG
*
33003245 TCGTATGAGCTTATCGATTCTCAGC
1 TCGTATGAGCTTACCGATTCTCAGC
33003270 TCGTATGAGCTTACCGATTCTCAGC
1 TCGTATGAGCTTACCGATTCTCAGC
*
33003295 TCGTATGAACTTACCGATTCTCAGC
1 TCGTATGAGCTTACCGATTCTCAGC
* *
33003320 TTGTGA-GAGCATACCGATTCAT-AGC
1 TCGT-ATGAGCTTACCGATTC-TCAGC
33003345 TCGTATGAGC
1 TCGTATGAGC
33003355 ATATATGTAA
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
24 1 0.01
25 73 0.96
26 2 0.03
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.32
Consensus pattern (25 bp):
TCGTATGAGCTTACCGATTCTCAGC
Found at i:33006097 original size:26 final size:26
Alignment explanation
Indices: 33006058--33006107 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
33006048 TCCATAAAGG
33006058 CTTTATTTCATATTACGCCACAAAAT
1 CTTTATTTCATATTACGCCACAAAAT
* *
33006084 CTTTCTTTCTTATTACGCCACAAA
1 CTTTATTTCATATTACGCCACAAA
33006108 GGCTTTTCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.26, G:0.04, T:0.40
Consensus pattern (26 bp):
CTTTATTTCATATTACGCCACAAAAT
Found at i:33006123 original size:27 final size:27
Alignment explanation
Indices: 33006053--33006148 Score: 108
Period size: 27 Copynumber: 3.6 Consensus size: 27
33006043 AATTCTCCAT
* *
33006053 AAAGGC-TTTATTTCATATTACGCCAC
1 AAAGGCTTTTCTTTCTTATTACGCCAC
**
33006079 AAAATC-TTTCTTTCTTATTACGCCAC
1 AAAGGCTTTTCTTTCTTATTACGCCAC
* *
33006105 AAAGGCTTTTCTATT-TTATTACACCAT
1 AAAGGCTTTTCT-TTCTTATTACGCCAC
33006132 AAAGGCTTTTCTTTCTT
1 AAAGGCTTTTCTTTCTT
33006149 GACGTGTTAC
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
26 28 0.47
27 29 0.49
28 2 0.03
ACGTcount: A:0.27, C:0.22, G:0.08, T:0.43
Consensus pattern (27 bp):
AAAGGCTTTTCTTTCTTATTACGCCAC
Found at i:33012574 original size:12 final size:12
Alignment explanation
Indices: 33012557--33012586 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
33012547 ACACACGGCT
*
33012557 GTGTCCTAGCCC
1 GTGTCCCAGCCC
33012569 GTGTCCCAGCCC
1 GTGTCCCAGCCC
33012581 GTGTCC
1 GTGTCC
33012587 GTACTCGTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.43, G:0.27, T:0.23
Consensus pattern (12 bp):
GTGTCCCAGCCC
Found at i:33024973 original size:14 final size:15
Alignment explanation
Indices: 33024932--33024973 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
33024922 CATTAATTAT
33024932 ATTATTTTCATGTTA
1 ATTATTTTCATGTTA
33024947 ATTATTTTCATGTTA
1 ATTATTTTCATGTTA
*
33024962 ATT-TTTTTATGT
1 ATTATTTTCATGT
33024974 AGTGGGTCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
14 8 0.31
15 18 0.69
ACGTcount: A:0.24, C:0.05, G:0.07, T:0.64
Consensus pattern (15 bp):
ATTATTTTCATGTTA
Found at i:33031008 original size:27 final size:27
Alignment explanation
Indices: 33030977--33031154 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
33030967 TAAATTGTAC
33030977 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
33031004 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33031030 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
33031058 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
33031086 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33031113 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33031140 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33031155 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:33031091 original size:82 final size:81
Alignment explanation
Indices: 33030978--33031133 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33030968 AAATTGTACA
* *
33030978 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
33031042 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
33031059 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
33031124 TGCGAGTTGA
65 TGCGAATTGA
33031134 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33031145 original size:82 final size:81
Alignment explanation
Indices: 33030974--33031154 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
33030964 GATTAAATTG
* *
33030974 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33031039 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
33031055 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
33031119 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
33031137 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33031155 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33039071 original size:27 final size:27
Alignment explanation
Indices: 33039040--33039217 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
33039030 TAAATTGTAC
33039040 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
33039067 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33039093 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
33039121 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
33039149 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33039176 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33039203 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33039218 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:33039154 original size:82 final size:81
Alignment explanation
Indices: 33039041--33039196 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33039031 AAATTGTACA
* *
33039041 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
33039105 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
33039122 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
33039187 TGCGAGTTGA
65 TGCGAATTGA
33039197 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33039208 original size:82 final size:81
Alignment explanation
Indices: 33039037--33039217 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
33039027 GATTAAATTG
* *
33039037 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33039102 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
33039118 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
33039182 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
33039200 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33039218 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33051327 original size:27 final size:27
Alignment explanation
Indices: 33051296--33051473 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
33051286 TAAATTGTAC
33051296 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
33051323 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33051349 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
33051377 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
33051405 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33051432 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33051459 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33051474 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:33051410 original size:82 final size:81
Alignment explanation
Indices: 33051297--33051452 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33051287 AAATTGTACA
* *
33051297 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
33051361 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
33051378 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
33051443 TGCGAGTTGA
65 TGCGAATTGA
33051453 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33051464 original size:82 final size:81
Alignment explanation
Indices: 33051293--33051473 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
33051283 GATTAAATTG
* *
33051293 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33051358 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
33051374 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
33051438 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
33051456 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33051474 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33059517 original size:27 final size:27
Alignment explanation
Indices: 33059486--33059663 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
33059476 TAAATTGTAC
33059486 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
33059513 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33059539 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
33059567 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
33059595 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33059622 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33059649 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33059664 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:33059600 original size:82 final size:81
Alignment explanation
Indices: 33059487--33059642 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33059477 AAATTGTACA
* *
33059487 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
33059551 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
33059568 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
33059633 TGCGAGTTGA
65 TGCGAATTGA
33059643 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33059654 original size:82 final size:81
Alignment explanation
Indices: 33059483--33059663 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
33059473 GATTAAATTG
* *
33059483 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33059548 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
33059564 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
33059628 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
33059646 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33059664 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33082744 original size:21 final size:21
Alignment explanation
Indices: 33082720--33082785 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
33082710 TACTTCGGTA
*
33082720 CCCCTGAATTGCACATATGTG
1 CCCCTGAATTGCACATACGTG
* * *
33082741 CCCCTG-TTTGTAC-T-CGGTT
1 CCCCTGAATTGCACATAC-GTG
33082760 CCCCTGAATTGCACATACGTG
1 CCCCTGAATTGCACATACGTG
33082781 CCCCT
1 CCCCT
33082786 TCTTCCATTC
Statistics
Matches: 34, Mismatches: 7, Indels: 8
0.69 0.14 0.16
Matches are distributed among these distances:
19 9 0.26
20 10 0.29
21 14 0.41
22 1 0.03
ACGTcount: A:0.17, C:0.35, G:0.18, T:0.30
Consensus pattern (21 bp):
CCCCTGAATTGCACATACGTG
Found at i:33082769 original size:40 final size:41
Alignment explanation
Indices: 33082683--33082785 Score: 145
Period size: 40 Copynumber: 2.5 Consensus size: 41
33082673 AATTATTCTA
* *
33082683 TGAATTGCAGATACGTGCCCTTATTTCTACTTCGGTACCCC
1 TGAATTGCACATACGTGCCCCTATTTCTACTTCGGTACCCC
* * * *
33082724 TGAATTGCACATATGTGCCCCTGTTTGTAC-TCGGTTCCCC
1 TGAATTGCACATACGTGCCCCTATTTCTACTTCGGTACCCC
33082764 TGAATTGCACATACGTGCCCCT
1 TGAATTGCACATACGTGCCCCT
33082786 TCTTCCATTC
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
40 30 0.55
41 25 0.45
ACGTcount: A:0.18, C:0.30, G:0.18, T:0.33
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTATTTCTACTTCGGTACCCC
Found at i:33091065 original size:40 final size:39
Alignment explanation
Indices: 33090967--33091229 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
33090957 TCCTCGTTCA
* * * *
33090967 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
33091006 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
33091045 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
33091085 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
33091125 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
33091165 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
33091206 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
33091230 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:33091189 original size:120 final size:119
Alignment explanation
Indices: 33090967--33091229 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
33090957 TCCTCGTTCA
* * *
33090967 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
33091032 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
33091085 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
33091150 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
33091206 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
33091230 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:33091238 original size:41 final size:41
Alignment explanation
Indices: 33091161--33091238 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
33091151 TTTGTATCTC
* * *
33091161 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
33091202 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
33091239 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:33099015 original size:40 final size:39
Alignment explanation
Indices: 33098917--33099179 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
33098907 TCCTCGTTCA
* * * *
33098917 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
33098956 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
33098995 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
33099035 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
33099075 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
33099115 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
33099156 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
33099180 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:33099139 original size:120 final size:119
Alignment explanation
Indices: 33098917--33099179 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
33098907 TCCTCGTTCA
* * *
33098917 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
33098982 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
33099035 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
33099100 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
33099156 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
33099180 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:33099188 original size:41 final size:41
Alignment explanation
Indices: 33099111--33099188 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
33099101 TTTGTATCTC
* * *
33099111 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
33099152 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
33099189 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:33107647 original size:23 final size:21
Alignment explanation
Indices: 33107602--33107647 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 21
33107592 TTCTGGGGGT
* *
33107602 GAGTTGAGTGAAGGGATTTTA
1 GAGTTGAGTGAAGGGAATATA
33107623 GAGTATGAGTGGAAGGGAATATA
1 GAGT-TGAGT-GAAGGGAATATA
33107646 GA
1 GA
33107648 CTCTTTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.19
22 5 0.24
23 12 0.57
ACGTcount: A:0.35, C:0.00, G:0.39, T:0.26
Consensus pattern (21 bp):
GAGTTGAGTGAAGGGAATATA
Found at i:33116738 original size:15 final size:15
Alignment explanation
Indices: 33116718--33116755 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
33116708 GGGCATGGTA
33116718 ATTGGGTTTGTGGGT
1 ATTGGGTTTGTGGGT
33116733 ATTGGGTTTGTGGGT
1 ATTGGGTTTGTGGGT
33116748 ATTGGGTT
1 ATTGGGTT
33116756 CTTTTGTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.08, C:0.00, G:0.45, T:0.47
Consensus pattern (15 bp):
ATTGGGTTTGTGGGT
Found at i:33120477 original size:25 final size:24
Alignment explanation
Indices: 33120449--33120531 Score: 69
Period size: 25 Copynumber: 3.4 Consensus size: 24
33120439 TAGCTCTTTC
33120449 GAGCCATATAACAGGAAGCTCATGA
1 GAGCCATATAAC-GGAAGCTCATGA
* * **
33120474 GAGCTATGTAACGGAAAGCTCAAAA
1 GAGCCATATAACGG-AAGCTCATGA
** *
33120499 GAGCCATA-ATTGAGAAGCTCATGT
1 GAGCCATATAACG-GAAGCTCATGA
33120523 GAGCCATAT
1 GAGCCATAT
33120532 CGAAAGCTTA
Statistics
Matches: 44, Mismatches: 11, Indels: 6
0.72 0.18 0.10
Matches are distributed among these distances:
24 19 0.43
25 25 0.57
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.19
Consensus pattern (24 bp):
GAGCCATATAACGGAAGCTCATGA
Found at i:33132726 original size:9 final size:9
Alignment explanation
Indices: 33132712--33132742 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
33132702 TTACTCTCTT
33132712 TCTCTATTC
1 TCTCTATTC
33132721 TCTCTATTC
1 TCTCTATTC
*
33132730 TCTCTGTTC
1 TCTCTATTC
33132739 TCTC
1 TCTC
33132743 ATTTTTCTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.06, C:0.35, G:0.03, T:0.55
Consensus pattern (9 bp):
TCTCTATTC
Found at i:33132751 original size:18 final size:18
Alignment explanation
Indices: 33132710--33132758 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
33132700 TCTTACTCTC
*
33132710 TTTCTCTATTCTCTCTAT
1 TTTCTCTGTTCTCTCTAT
*
33132728 TCTCTCTGTTCTCTC-ATT
1 TTTCTCTGTTCTCTCTA-T
*
33132746 TTTCTCTGCTCTC
1 TTTCTCTGTTCTC
33132759 CCTTTTCTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
17 1 0.04
18 25 0.96
ACGTcount: A:0.06, C:0.33, G:0.04, T:0.57
Consensus pattern (18 bp):
TTTCTCTGTTCTCTCTAT
Found at i:33140728 original size:21 final size:21
Alignment explanation
Indices: 33140699--33140739 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
33140689 TATAGAAGGT
* *
33140699 ATCTCTTAATTTACTTAGTTC
1 ATCTCTTAACTGACTTAGTTC
*
33140720 ATCTTTTAACTGACTTAGTT
1 ATCTCTTAACTGACTTAGTT
33140740 TTCTTTTTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.17, G:0.07, T:0.51
Consensus pattern (21 bp):
ATCTCTTAACTGACTTAGTTC
Found at i:33143483 original size:26 final size:26
Alignment explanation
Indices: 33143447--33143498 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
33143437 GGCACCGTTG
33143447 CTGGGGACTATTCTACAAGTTGTTAT
1 CTGGGGACTATTCTACAAGTTGTTAT
33143473 CTGGGGACTATTCTACAAGTTGTTAT
1 CTGGGGACTATTCTACAAGTTGTTAT
33143499 TTGTGAATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGGGACTATTCTACAAGTTGTTAT
Found at i:33144507 original size:28 final size:28
Alignment explanation
Indices: 33144475--33144607 Score: 169
Period size: 28 Copynumber: 4.8 Consensus size: 28
33144465 AATATGGGCT
* * * *
33144475 TTAGCCCATTTCAATAATAGTGTGAGCC
1 TTAGCCCAATACAGTAACAGTGTGAGCC
*
33144503 TTAGCCCAATACAGTAATC-GTGTGGGCC
1 TTAGCCCAATACAGTAA-CAGTGTGAGCC
* * *
33144531 TTAGCCCAATACAGCAACAGTGTGGGTC
1 TTAGCCCAATACAGTAACAGTGTGAGCC
*
33144559 TTAGCCCAATACAGTAACAGTCTGAGCC
1 TTAGCCCAATACAGTAACAGTGTGAGCC
33144587 TTAGCCCAATACAGTAACAGT
1 TTAGCCCAATACAGTAACAGT
33144608 ACAATACAGT
Statistics
Matches: 92, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
27 1 0.01
28 91 0.99
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (28 bp):
TTAGCCCAATACAGTAACAGTGTGAGCC
Found at i:33145312 original size:161 final size:162
Alignment explanation
Indices: 33144981--33146803 Score: 1825
Period size: 161 Copynumber: 11.3 Consensus size: 162
33144971 TTCGACTCCT
* * * * * *
33144981 AGGGGTATATCAGTCATTTTA-CCTTATGGGGGTATTTCAGTCATTTTACCGTTCGAGGGTATTT
1 AGGGGTATTTCGGTCATTTTACCCTT-CGAGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTT
* * * *
33145045 TAGTCATCTTACCCTT-TGTGGGTATTTC-AGTCATTTTACCCTTTGGGGGGTATTTCGGTCATT
65 TAGTCATTTTACCCTTCAG-GGGTATTTCGA-TCATTTTACCC-TTCGAGGGTATTTCGGTCATT
* *
33145108 TTACCCTTCAGGGGTATTTCGATTATTTTACCTTTC
127 TTACCCTTCAGGGGTATTTCGGTTATTTTACCCTTC
* * * * * * *
33145144 GGGGGTATTTCAGTCATTTTACCATTCGA-GGTATGTCGGTCATTTTACCCTTCGGGGGTATGTC
1 AGGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTT
* * * *
33145208 AGTCATTTTACCCTTCAAGGGTATTTCGATCATTTTATCCTTCGAAGGTATTTCGGTCAGTTTAC
66 AGTCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCGGTCATTTTAC
* * *
33145273 CCTTCAGGGGTATTTTGGTCATTTTATCCTTC
131 CCTTCAGGGGTATTTCGGTTATTTTACCCTTC
* * *
33145305 AGGGGTATTTCGGTCATTTTACCCTTTG-GGGTATTTTGGTCATTTTATCCTTC-AGGGGTATTT
1 AGGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCTTCGA-GGGTATTT
* * * ** *
33145368 TGGTTATTTTACCCTTC-GGGGTATTTCGGTCATTTTACCCTTCG-GGGTATTTCTATTATTTTA
65 TAGTCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCGGTCATTTTA
* * * *
33145431 CCCTTC-GAGGGTATTTCAGTCATTTTATCCTTT
130 CCCTTCAG-GGGTATTTCGGTTATTTTACCCTTC
* * * * * * *
33145464 AAGAGTATTTCGATCATTTTACCCTTCGGGGGTATTTCGATTATTTTA-CCTTCCGGGGGTA-TT
1 AGGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCTT-CGAGGGTATTT
* * ** * *
33145527 TCGATTATTTTACCCTTCAGGGGTATTTTAATCATTTTA-CCTATTG-GGGTATTTCGATCATTT
65 TAG-TCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCCT-TCGAGGGTATTTCGGTCATTT
* * *
33145590 TACCCTTCGGGGGTATGTCAGTTATTTTACCCTTC
128 TACCCTTCAGGGGTATTTCGGTTATTTTACCCTTC
* * * * * * *
33145625 AAGGGTATTTCGATCATTTTATCCTTTGAGGGTATTTCGGTCAGTTTACCCTTTGGGGGTATTTT
1 AGGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTT
* * * ** *
33145690 GGTCATTTTACCCTTTAGGGGTATTTCGATCATTTTACCCTTTGAGGGTATTTTAGTCATTTTAT
66 AGTCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCGGTCATTTTAC
*
33145755 CCTTCAGGGGTATTTTGGTTATTTTACCCTTC
131 CCTTCAGGGGTATTTCGGTTATTTTACCCTTC
* * * *
33145787 -GGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGATTATTTTA-CTTTATGAGGGTA-TT
1 AGGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCTT-CGAGGGTATTT
* * * * * * *
33145849 TCGATTATTTTACCTTTCGGGGGTATTTCAATCATTTTACCTTTCGAGGGTATTTTGGTCATTTT
65 TAG-TCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCGGTCATTTT
** * * * *
33145914 ATACTTCAAGGGTATTTCGGTCATTTTATCTTTC
129 ACCCTTCAGGGGTATTTCGGTTATTTTACCCTTC
* * * * * *
33145948 AGGGGTATTT-AGTCATTTTACCTTTTGAGGGTATTTTGGTCATTTTACACTTCAAGGGTATTTT
1 AGGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTT
* * * * * *
33146012 GGTCATTTTACCCTTCAAGGGTATTTCGGTCATTTTACCCTTTG-GGCGTATTTTGGTCATTTTG
66 AGTCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCCTTCGAGG-GTATTTCGGTCATTTTA
* *
33146076 TCCTTCAGGGGTATTTTGGTTATTTTACCCTTC
130 CCCTTCAGGGGTATTTCGGTTATTTTACCCTTC
* * ** *
33146109 -GGGGTATTTTGGTCATTTTACCCTTC-AAGGTATTTCTATTATTTTACCCTTCGAGGGTATTTT
1 AGGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTT
* * * * * *
33146172 AGTCATTTTATCCTTTAAGGGTATTTCGGTCATTTTACCCTTCGGGGGGTATTTCGATCATTTTA
66 AGTCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCCTTC-GAGGGTATTTCGGTCATTTTA
* * *
33146237 CTCTTCGGGGGTATTTCGGTTATTTTACCTTTC
130 CCCTTCAGGGGTATTTCGGTTATTTTACCCTTC
* * * **
33146270 GGGGGTATTTCGATTATTTTACCCTTC-AGGGGTATTTCAATCATTTTA-CCTATCG-GGGTA-T
1 AGGGGTATTTCGGTCATTTTACCCTTCGA-GGGTATTTCGGTCATTTTACCCT-TCGAGGGTATT
* * * * * *
33146331 TTCGATCATTTTACCCTTCGGGGGTATGTC-AGTTATTTTACCCTTCAAGGGTATTTCGATCATT
64 TTAG-TCATTTTACCCTTCAGGGGTATTTCGA-TCATTTTACCCTTCGAGGGTATTTCGGTCATT
* * *
33146395 TTATCCTTC-GAGGGTATTTCGGTCAATTTACCCTTC
127 TTACCCTTCAG-GGGTATTTCGGTTATTTTACCCTTC
* * * * * *
33146431 GGGGGTATTTTGGTCATTTTACCTTTCAAGGGTATTTCGGTTATTTTACCCTTTGAGGGTATTTT
1 AGGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTT
* *
33146496 AGTCATTTTATCCTTCAGGGGTATTTCGATTATTTTACCCTTCG-GGGTATTTCGGTCATTTTAC
66 AGTCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCGGTCATTTTAC
* * *
33146560 CCTTCGGGGGTATTTTGGTTATTTTACCCTAC
131 CCTTCAGGGGTATTTCGGTTATTTTACCCTTC
* * ** * * *
33146592 -GAGGGTATTTCGATCATTTTATCCTTTTAGGGTATTTCGATCATTTTACCTTTCGAGGATATTT
1 AG-GGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTT
* * * * * * * * *
33146656 TGGTCATTTTATCCTTTAAGGGTATTTTGGTCGTTTTACCTTTC-AGGGGTATTTCAGTCATTTT
65 TAGTCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCCTTCGA-GGGTATTTCGGTCATTTT
* * *
33146720 ACCTTTCGGGGGTATTTCGGTCATTTTACCCTTC
129 ACCCTTCAGGGGTATTTCGGTTATTTTACCCTTC
33146754 -GAGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACC
1 AG-GGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACC
33146804 TTTTGAGGTT
Statistics
Matches: 1391, Mismatches: 228, Indels: 83
0.82 0.13 0.05
Matches are distributed among these distances:
158 1 0.00
159 74 0.05
160 152 0.11
161 778 0.56
162 338 0.24
163 45 0.03
164 3 0.00
ACGTcount: A:0.17, C:0.17, G:0.21, T:0.45
Consensus pattern (162 bp):
AGGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTT
AGTCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCGGTCATTTTAC
CCTTCAGGGGTATTTCGGTTATTTTACCCTTC
Found at i:33146811 original size:27 final size:27
Alignment explanation
Indices: 33144983--33146826 Score: 1748
Period size: 27 Copynumber: 68.6 Consensus size: 27
33144973 CGACTCCTAG
* * * *
33144983 GGGTATATCAGTCATTTTA-CCTTATGG
1 GGGTATTTCGGTCATTTTACCCTT-CGA
* *
33145010 GGGTATTTCAGTCATTTTACCGTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
** * * *
33145037 GGGTATTTTAGTCATCTTACCCTTTGT
1 GGGTATTTCGGTCATTTTACCCTTCGA
* * *
33145064 GGGTATTTCAGTCATTTTACCCTTTGGG
1 GGGTATTTCGGTCATTTTACCC-TTCGA
33145092 GGGTATTTCGGTCATTTTACCCTTC-A
1 GGGTATTTCGGTCATTTTACCCTTCGA
* * * *
33145118 GGGGTATTTCGATTATTTTACCTTTCGG
1 -GGGTATTTCGGTCATTTTACCCTTCGA
* *
33145146 GGGTATTTCAGTCATTTTACCATTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* *
33145173 -GGTATGTCGGTCATTTTACCCTTCGG
1 GGGTATTTCGGTCATTTTACCCTTCGA
* * *
33145199 GGGTATGTCAGTCATTTTACCCTTCAA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* *
33145226 GGGTATTTCGATCATTTTATCCTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* *
33145253 AGGTATTTCGGTCAGTTTACCCTTC-A
1 GGGTATTTCGGTCATTTTACCCTTCGA
* *
33145279 GGGGTATTTTGGTCATTTTATCCTTC-A
1 -GGGTATTTCGGTCATTTTACCCTTCGA
*
33145306 GGGGTATTTCGGTCATTTTACCCTTTG-
1 -GGGTATTTCGGTCATTTTACCCTTCGA
* *
33145333 GGGTATTTTGGTCATTTTATCCTTC-A
1 GGGTATTTCGGTCATTTTACCCTTCGA
* *
33145359 GGGGTATTTTGGTTATTTTACCCTTCG-
1 -GGGTATTTCGGTCATTTTACCCTTCGA
33145386 GGGTATTTCGGTCATTTTACCCTTCG-
1 GGGTATTTCGGTCATTTTACCCTTCGA
** *
33145412 GGGTATTTCTATTATTTTACCCTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* * **
33145439 GGGTATTTCAGTCATTTTATCCTTTAA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* * *
33145466 GAGTATTTCGATCATTTTACCCTTCGG
1 GGGTATTTCGGTCATTTTACCCTTCGA
* * *
33145493 GGGTATTTCGATTATTTTA-CCTTCCGG
1 GGGTATTTCGGTCATTTTACCCTT-CGA
* *
33145520 GGGTATTTCGATTATTTTACCCTTC-A
1 GGGTATTTCGGTCATTTTACCCTTCGA
*** *
33145546 GGGGTATTTTAATCATTTTA-CCTATTG-
1 -GGGTATTTCGGTCATTTTACCCT-TCGA
* *
33145573 GGGTATTTCGATCATTTTACCCTTCGG
1 GGGTATTTCGGTCATTTTACCCTTCGA
* * * *
33145600 GGGTATGTCAGTTATTTTACCCTTCAA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* * *
33145627 GGGTATTTCGATCATTTTATCCTTTGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* * *
33145654 GGGTATTTCGGTCAGTTTACCCTTTGG
1 GGGTATTTCGGTCATTTTACCCTTCGA
* *
33145681 GGGTATTTTGGTCATTTTACCCTT-TA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* *
33145707 GGGGTATTTCGATCATTTTACCCTTTGA
1 -GGGTATTTCGGTCATTTTACCCTTCGA
** *
33145735 GGGTATTTTAGTCATTTTATCCTTC-A
1 GGGTATTTCGGTCATTTTACCCTTCGA
* *
33145761 GGGGTATTTTGGTTATTTTACCCTTCG-
1 -GGGTATTTCGGTCATTTTACCCTTCGA
33145788 GGGTATTTCGGTCATTTTACCCTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* * * *
33145815 GGGTATTTCGATTATTTTA-CTTTATGA
1 GGGTATTTCGGTCATTTTACCCTT-CGA
* * * *
33145842 GGGTATTTCGATTATTTTACCTTTCGG
1 GGGTATTTCGGTCATTTTACCCTTCGA
** *
33145869 GGGTATTTCAATCATTTTACCTTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* ** *
33145896 GGGTATTTTGGTCATTTTATACTTCAA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* *
33145923 GGGTATTTCGGTCATTTTATCTTTC-A
1 GGGTATTTCGGTCATTTTACCCTTCGA
* * *
33145949 GGGGTATTT-AGTCATTTTACCTTTTGA
1 -GGGTATTTCGGTCATTTTACCCTTCGA
* * *
33145976 GGGTATTTTGGTCATTTTACACTTCAA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* *
33146003 GGGTATTTTGGTCATTTTACCCTTCAA
1 GGGTATTTCGGTCATTTTACCCTTCGA
*
33146030 GGGTATTTCGGTCATTTTACCCTTTG-
1 GGGTATTTCGGTCATTTTACCCTTCGA
* **
33146056 GGCGTATTTTGGTCATTTTGTCCTTC-A
1 GG-GTATTTCGGTCATTTTACCCTTCGA
* *
33146083 GGGGTATTTTGGTTATTTTACCCTTCG-
1 -GGGTATTTCGGTCATTTTACCCTTCGA
*
33146110 GGGTATTTTGGTCATTTTACCCTTC-A
1 GGGTATTTCGGTCATTTTACCCTTCGA
* ** *
33146136 AGGTATTTCTATTATTTTACCCTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
** * **
33146163 GGGTATTTTAGTCATTTTATCCTTTAA
1 GGGTATTTCGGTCATTTTACCCTTCGA
*
33146190 GGGTATTTCGGTCATTTTACCCTTCGGG
1 GGGTATTTCGGTCATTTTACCCTTC-GA
* * *
33146218 GGGTATTTCGATCATTTTACTCTTCGG
1 GGGTATTTCGGTCATTTTACCCTTCGA
* * *
33146245 GGGTATTTCGGTTATTTTACCTTTCGG
1 GGGTATTTCGGTCATTTTACCCTTCGA
* *
33146272 GGGTATTTCGATTATTTTACCCTTC-A
1 GGGTATTTCGGTCATTTTACCCTTCGA
**
33146298 GGGGTATTTCAATCATTTTA-CCTATCG-
1 -GGGTATTTCGGTCATTTTACCCT-TCGA
* *
33146325 GGGTATTTCGATCATTTTACCCTTCGG
1 GGGTATTTCGGTCATTTTACCCTTCGA
* * * *
33146352 GGGTATGTCAGTTATTTTACCCTTCAA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* *
33146379 GGGTATTTCGATCATTTTATCCTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* *
33146406 GGGTATTTCGGTCAATTTACCCTTCGG
1 GGGTATTTCGGTCATTTTACCCTTCGA
* * *
33146433 GGGTATTTTGGTCATTTTACCTTTCAA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* *
33146460 GGGTATTTCGGTTATTTTACCCTTTGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
** *
33146487 GGGTATTTTAGTCATTTTATCCTTC-A
1 GGGTATTTCGGTCATTTTACCCTTCGA
* *
33146513 GGGGTATTTCGATTATTTTACCCTTCG-
1 -GGGTATTTCGGTCATTTTACCCTTCGA
*
33146540 GGGTATTTCGGTCATTTTACCCTTCGG
1 GGGTATTTCGGTCATTTTACCCTTCGA
* * *
33146567 GGGTATTTTGGTTATTTTACCCTACGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* * **
33146594 GGGTATTTCGATCATTTTATCCTTTTA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* *
33146621 GGGTATTTCGATCATTTTACCTTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* * * **
33146648 GGATATTTTGGTCATTTTATCCTTTAA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* * *
33146675 GGGTATTTTGGTCGTTTTACCTTTC-A
1 GGGTATTTCGGTCATTTTACCCTTCGA
* * *
33146701 GGGGTATTTCAGTCATTTTACCTTTCGG
1 -GGGTATTTCGGTCATTTTACCCTTCGA
33146729 GGGTATTTCGGTCATTTTACCCTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
33146756 GGGTATTTCGGTCATTTTACCCTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* *
33146783 GGGTATTTCGGTCATTTTACCTTTTGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* *
33146810 GGTTATTCCGGTCATTT
1 GGGTATTTCGGTCATTT
33146827 GCCCACGAAT
Statistics
Matches: 1511, Mismatches: 261, Indels: 90
0.81 0.14 0.05
Matches are distributed among these distances:
26 264 0.17
27 1186 0.78
28 61 0.04
ACGTcount: A:0.17, C:0.17, G:0.21, T:0.45
Consensus pattern (27 bp):
GGGTATTTCGGTCATTTTACCCTTCGA
Found at i:33150655 original size:303 final size:301
Alignment explanation
Indices: 33149977--33152327 Score: 2426
Period size: 303 Copynumber: 7.8 Consensus size: 301
33149967 TTTTTTAGTT
* * * ** * *
33149977 AGAGTTGACGGGTGTGATCATACAAGCAGTAATGCACTGGATCCCATTAGAACTCCGCAGTTAAT
1 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCAGATCCCATCAGAACTCCGCAGTTAAG
* * * * * * * * * *
33150042 CATGC-TTGTGAGATAGTAGTACAAGGATGGATGACCTCCTGGGAAGACCCCGTGTTGCACCCCT
66 CGT-CTTTGGGTGAGAGTAGTACTAGGATGGGTGACCTCCAGGGAAGTCCTCGTGTTGCACCCTT
* * * * *
33150106 CCTCTTTTATTTTATATAAA-TT-TTTTTAGTTGCATTTTATACAC------TAATTAATTA-TT
130 CC-ATTTTATTTCATATAAAGTTGTTTTTAGTTGCAATTTCTACACGTGGTGTAACTAATTAGTT
*
33150162 -TTT--ATTTTGCGAAATAAATAACTTGAAACGTTATTTGGTCGAATTTGCATTCAAATTCGAGG
194 ATTTGCATTTTGC-AAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAATTCGAGG
* *
33150224 CGCAAGTGCGGTAAGGGGCAGCCTTTATATATATATAGATTACGCA
258 CGCAAGTGCGATAAGGGGCAGCCTTTATATA-A-ATAGATTGCGCA
** * * * *
33150270 AGAGTTTTCAGGTGCGATCATACCAGCTCTAATGCACC-GAATCCCATCAGAACTTCACAGTTAA
1 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCAG-ATCCCATCAGAACTCCGCAGTTAA
* * * * *
33150334 GCGTGC-TTGGGCGAGAGTAGTATTAGGATGGATGTCCTCTC-GGGAAGTCCTCGCGTTGCACCC
65 GCGT-CTTTGGGTGAGAGTAGTACTAGGATGGGTGACCTC-CAGGGAAGTCCTCGTGTTGCACCC
* * * *
33150397 TTCTAGTTTTATTTCGTATAAATGTT-TTTTTAGTTGCAATTTGTACACGTGCTGTAAC-ATATT
128 TTCCA-TTTTATTTCATATAAA-GTTGTTTTTAGTTGCAATTTCTACACGTGGTGTAACTA-ATT
* * * * * *
33150460 AGTTATTTTCGTTTTGCAAGATAAATAATTTGAAATGTTATTTTGTCGAATGTGCATTGAAATTC
190 AGTTATTTGCATTTTGCAA-ATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAATTC
* * *
33150525 GAGGCGCAAGTGAGATAATGGCCAGCCTTTATATAAATAGATTGCGCA
254 GAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCA
* * *
33150573 AGAGTTGACGGGTGCGATCATACCAGCACTAATGTACCAGATCCCATCAGAACTCTGCAGCTAAG
1 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCAGATCCCATCAGAACTCCGCAGTTAAG
* ** * * * *
33150638 CGTATTTGGGTGAGAGTAGTACTAGGATTCGTGAACTCCTGGGAAGTCCTTGTGTTGCACCCCTA
66 CGTCTTTGGGTGAGAGTAGTACTAGGATGGGTGACCTCCAGGGAAGTCCTCGTGTTGCA-CCCTT
* * * *
33150703 CCATTTTATTTCAAATAAAGTTTATTTTTAGTTGCATTTTCTACACGTGGTGTAACTAATTAGTA
130 CCATTTTATTTCATATAAAG-TTGTTTTTAGTTGCAATTTCTACACGTGGTGTAACTAATTAGTT
** *
33150768 ATTTGTGTTTTGCAAAATAAAAAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAATTCGAGG
194 ATTTGCATTTTGC-AAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAATTCGAGG
* * * *
33150833 CACAAGTGCGATAGGGGGCAGCCTTTATATAAATATATTGCGTA
258 CGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCA
* * * *
33150877 AGAGTTGACGGGTGTGATCATACCAGTAGTAATGCA-CAGGATCCCATCAGAACTCCGTAGTTAA
1 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCA-GATCCCATCAGAACTCCGCAGTTAA
* * * *
33150941 -CTGTGC-TTGCGAGATAGTAGTACTATGATGGGTGACCTTCC-GGGAAGTCCTTC-TGTTGC-C
65 GC-GT-CTTTGGGTGAGAGTAGTACTAGGATGGGTGACC-TCCAGGGAAGTCC-TCGTGTTGCAC
* * * * *
33151001 CCTCTCCAATTTTTTTTGATATAAAGTTTTTTTTAGTT-AAATTTTCTAAACGTGGTGTAACTAA
126 CCT-TCC-ATTTTATTTCATATAAAGTTGTTTTTAGTTGCAA-TTTCTACACGTGGTGTAACTAA
* *
33151065 TTAGTTATTTGCGTTTTGCAAAATAAATAATTTCAAACGTTATTTGGTCGAATTTGCATTCAAAT
188 TTAGTTATTTGCATTTTGC-AAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAAT
* * * *
33151130 TCGAGGCGTAAGTGCAATAGGGGGTAGCCTTTATATAAATAGATTGCGCA
252 TCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCA
** * ** * *
33151180 AGAGTTGACGGGTATGATCATACCAGCGCTAATGCACGGGATCCCATCAGAACTCCACTGTTAAG
1 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCAGATCCCATCAGAACTCCGCAGTTAAG
* * * * * *
33151245 CGTGC-TTGGGCGAAATTAGTACTTGGTTTGGTGACCTCCAGGGAAGTCCTCGTGTTGCAACCCT
66 CGT-CTTTGGGTGAGAGTAGTACTAGGATGGGTGACCTCCAGGGAAGTCCTCGTGTTGC-ACCCT
* * *
33151309 CCCATTTTATTTCATATAAAGTTGTTTTTCGTTGC-ATTT-T-CA--TGGTGTAACTAATTAGTA
129 TCCATTTTATTTCATATAAAGTTGTTTTTAGTTGCAATTTCTACACGTGGTGTAACTAATTAGTT
* * *
33151369 ATTTGCATTTTTCGAAATAAAAAATTTGAAACGTTATTTGGTCAAATTTGCATTCAAATTCGAGG
194 ATTTGCATTTTGC-AAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAATTCGAGG
* * * *
33151434 CGCAAGTGCGATATGGTGTAGCCTTTATATAAATAGATTGCGTA
258 CGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCA
* * * * * * *
33151478 AGAGTTGACGAGTGTGATCATACCAGTAGTAATGCA-TAGGATCCCATCAAAACTCCGTAGTTAA
1 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCA-GATCCCATCAGAACTCCGCAGTTAA
* * * * *
33151542 GCGTGCTTTCGG-GATAGTAGTACTATGATGGGTGACCTTCC-GGGAAATGCTCGTGTTGCA-CC
65 GCGT-CTTTGGGTGAGAGTAGTACTAGGATGGGTGACC-TCCAGGGAAGTCCTCGTGTTGCACCC
* * *
33151604 TCTCCAATTTTATTTCATATAAAGATT-TTTTTAGTT-AAATTTTCTAAACATGGTGTAACTAAT
128 T-TCC-ATTTTATTTCATATAAAG-TTGTTTTTAGTTGCAA-TTTCTACACGTGGTGTAACTAAT
* * * * *
33151667 TAGTTATTTGCGTTTTGTGAAACAAATAATTTCAAATGTTATTTGGTCGAATTTGCATTCAAATT
189 TAGTTATTTGCATTTTG-CAAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAATT
*
33151732 CGAGGCGCAAGTGCGATAAGGGGCAGCTTTTATATAAATAGATTGCGCA
253 CGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCA
* * * *
33151781 AGAGTTGACGGGTACGATCATACCAGCTCTGATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
1 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCAGATCCCATCAGAACTCCGCAGTTAAG
* * * * * *
33151846 TGTGCTTAGGCT-AGATTAGTACTAGGTTGGGTGACCTCCAGGGAAGTCCTCATGTTGCACCCAT
66 CGT-CTTTGGGTGAGAGTAGTACTAGGATGGGTGACCTCCAGGGAAGTCCTCGTGTTGCACCC-T
* * * * * **
33151910 CCCGTTTTATTTCATATCACGTTGTTTTTCGTTGCGTTTTCTACACGTGGTGTAACTAATTAGTT
129 TCCATTTTATTTCATATAAAGTTGTTTTTAGTTGCAATTTCTACACGTGGTGTAACTAATTAGTT
* * *
33151975 ATTTGCATTTTGCGAAACAAATAATTTCAAATGTTATTTGGTCGAATTTGC-TTCAAATTCGAGG
194 ATTTGCATTTTGC-AAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAATTCGAGG
* *
33152039 CGCAAGTGCGATAAGGGGCAGCTTTTATATAAATAGATTGTGCA
258 CGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCA
* * * * ***
33152083 AGAGTTTACGGGTACGATCATACCAGCTCTGATGCAATGGATCCCATCAGAACTCCGCAGTTAAG
1 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCAGATCCCATCAGAACTCCGCAGTTAAG
* * * * * * *
33152148 TGTGCTTAGGCT-AGATTAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCATGTTGCACCCAT
66 CGT-CTTTGGGTGAGAGTAGTACTAGGATGGGTGACCTCCAGGGAAGTCCTCGTGTTGCACCC-T
* * ** *
33152212 CCCATTTTATTTCATATAACGTTGTTTTTCA-TTGCGTTTTCTGCACGTGGTGTAACTAATTAGT
129 TCCATTTTATTTCATATAAAGTTGTTTTT-AGTTGCAATTTCTACACGTGGTGTAACTAATTAGT
* * ** *
33152276 TATTTTCATTTTGCAAAATAAATAATTTAAAATATTATTTGGCCGAATTTGC
193 TATTTGCATTTTGC-AAATAAATAATTTGAAACGTTATTTGGTCGAATTTGC
33152328 GCGAGAGTAG
Statistics
Matches: 1757, Mismatches: 239, Indels: 115
0.83 0.11 0.05
Matches are distributed among these distances:
292 1 0.00
293 117 0.07
294 1 0.00
295 22 0.01
296 3 0.00
297 3 0.00
298 235 0.13
299 12 0.01
300 3 0.00
301 9 0.01
302 308 0.18
303 700 0.40
304 254 0.14
305 89 0.05
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (301 bp):
AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCAGATCCCATCAGAACTCCGCAGTTAAG
CGTCTTTGGGTGAGAGTAGTACTAGGATGGGTGACCTCCAGGGAAGTCCTCGTGTTGCACCCTTC
CATTTTATTTCATATAAAGTTGTTTTTAGTTGCAATTTCTACACGTGGTGTAACTAATTAGTTAT
TTGCATTTTGCAAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGC
AAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCA
Found at i:33151132 original size:607 final size:605
Alignment explanation
Indices: 33149977--33152327 Score: 2796
Period size: 601 Copynumber: 3.9 Consensus size: 605
33149967 TTTTTTAGTT
** * * * * *
33149977 AGAGTTGACGGGTGTGATCATACAAGCAGTAATGCACTGGATCCCATTAGAACTCCGCAGTTAAT
1 AGAGTTGACGGGTACGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
* * * * * * * *
33150042 CATGCTTGTGAGATAGTAGTACAAGGA-TGGATGACCTCCTGGGAAGACCCCGTGTTGCACCCCT
66 CGTGCTTGGGTGAGAGTAGTACTAGGATTGG-TGACCTCCAGGGAAGTCCTCGTGTTGCACCCCT
* * *
33150106 CCTC-TTTTATTTTATATAAA-TT-TTTTTAGTTGCATTTTATACAC-----TAATTAATTA-T-
130 CC-CATTTTATTTCATATAAAGTTGTTTTTAGTTGCATTTTCTACACTGGTGTAACTAATTAGTA
* * *
33150161 -TTT-TATTTTGCGAAATAAATAACTTGAAACGTTATTTGGTCGAATTTGCATTCAAATTCGAGG
194 ATTTGCATTTTGCGAAATAAAAAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAATTCGAGG
* * ** *
33150224 CGCAAGTGCGGTAAGGGGCAGCCTTTATATATATATAGATTACGCAAGAGTTTTCAGGTGCGATC
259 CGCAAGTGCGATAAGGGGCAGCCTTTATATA-A-ATAGATTGCGCAAGAGTTGACGGGTGCGATC
* * * * * * *
33150289 ATACCAGCTCTAATGCACCGAATCCCATCAGAACTTCACAGTTAAGCGTGCTTGGGCGAGAGTAG
322 ATACCAGCTCTAATGCACAGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGCGAGATAGTAG
* * * * * * *
33150354 TATTAGGATGGATGTCCTCTCGGGAAGTCCTCGCGTTGCACCCT-TCTAGTTTTATTTCGTATAA
387 TACTAGGATGGGTGACCTC-CGGGAAGTCCTCGTGTTGCACCCTCTCCAATTTTATTTCATATAA
* * * * * *
33150418 A-TGTTTTTTTAGTTGCAA-TTTGTACACGTGCTGTAAC-ATATTAGTTATTTTCGTTTTGCAAG
451 AGT-TTTTTTTAGTT-AAATTTTCTAAACGTGGTGTAACTA-ATTAGTTATTTGCGTTTTGCAAA
* * * * *
33150480 ATAAATAATTTGAAATGTTATTTTGTCGAATGTGCATTGAAATTCGAGGCGCAAGTGAGATAATG
513 ATAAATAATTTCAAATGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGAGATAAGG
*
33150545 GCCAGCCTTTATATAAATAGATTGCGCA
578 GGCAGCCTTTATATAAATAGATTGCGCA
* * * * *
33150573 AGAGTTGACGGGTGCGATCATACCAGCACTAATGTACCAGATCCCATCAGAACTCTGCAGCTAAG
1 AGAGTTGACGGGTACGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
** * * * * *
33150638 CGTATTTGGGTGAGAGTAGTACTAGGATTCGTGAACTCCTGGGAAGTCCTTGTGTTGCACCCCTA
66 CGTGCTTGGGTGAGAGTAGTACTAGGATTGGTGACCTCCAGGGAAGTCCTCGTGTTGCACCCCTC
* *
33150703 CCATTTTATTTCAAATAAAGTTTATTTTTAGTTGCATTTTCTACACGTGGTGTAACTAATTAGTA
131 CCATTTTATTTCATATAAAG-TTGTTTTTAGTTGCATTTTCTACAC-TGGTGTAACTAATTAGTA
** *
33150768 ATTTGTGTTTTGCAAAATAAAAAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAATTCGAGG
194 ATTTGCATTTTGCGAAATAAAAAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAATTCGAGG
* * * * *
33150833 CACAAGTGCGATAGGGGGCAGCCTTTATATAAATATATTGCGTAAGAGTTGACGGGTGTGATCAT
259 CGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCAT
* *
33150898 ACCAG-TAGTAATGCACAGGATCCCATCAGAACTCCGTAGTTAA-CTGTGCTTGCGAGATAGTAG
324 ACCAGCT-CTAATGCACAGGATCCCATCAGAACTCCGCAGTTAAGC-GTGCTTGCGAGATAGTAG
* * *
33150961 TACTATGATGGGTGACCTTCCGGGAAGTCCTTC-TGTTGC-CCCTCTCCAATTTTTTTTGATATA
387 TACTAGGATGGGTGACC-TCCGGGAAGTCC-TCGTGTTGCACCCTCTCCAATTTTATTTCATATA
33151024 AAGTTTTTTTTAGTTAAATTTTCTAAACGTGGTGTAACTAATTAGTTATTTGCGTTTTGCAAAAT
450 AAGTTTTTTTTAGTTAAATTTTCTAAACGTGGTGTAACTAATTAGTTATTTGCGTTTTGCAAAAT
* * *
33151089 AAATAATTTCAAACGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGTAAGTGCA-ATAGGGG
515 AAATAATTTCAAATGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTG-AGATAAGGG
*
33151153 GTAGCCTTTATATAAATAGATTGCGCA
579 GCAGCCTTTATATAAATAGATTGCGCA
* * * * *
33151180 AGAGTTGACGGGTATGATCATACCAGCGCTAATGCACGGGATCCCATCAGAACTCCACTGTTAAG
1 AGAGTTGACGGGTACGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
* * * * * *
33151245 CGTGCTTGGGCGAAATTAGTACTTGGTTTGGTGACCTCCAGGGAAGTCCTCGTGTTGCAACCCTC
66 CGTGCTTGGGTGAGAGTAGTACTAGGATTGGTGACCTCCAGGGAAGTCCTCGTGTTGCACCCCTC
*
33151310 CCATTTTATTTCATATAAAGTTGTTTTTCGTTGCA-TTT-T-CA-TGGTGTAACTAATTAGTAAT
131 CCATTTTATTTCATATAAAGTTGTTTTTAGTTGCATTTTCTACACTGGTGTAACTAATTAGTAAT
* *
33151371 TTGCATTTTTCGAAATAAAAAATTTGAAACGTTATTTGGTCAAATTTGCATTCAAATTCGAGGCG
196 TTGCATTTTGCGAAATAAAAAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCG
* * * * * *
33151436 CAAGTGCGATATGGTGTAGCCTTTATATAAATAGATTGCGTAAGAGTTGACGAGTGTGATCATAC
261 CAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATAC
* * * * * *
33151501 CAG-TAGTAATGCATAGGATCCCATCAAAACTCCGTAGTTAAGCGTGCTTTCGGGATAGTAGTAC
326 CAGCT-CTAATGCACAGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGCGAGATAGTAGTAC
* * * *
33151565 TATGATGGGTGACCTTCCGGGAAATGCTCGTGTTGCA-CCTCTCCAATTTTATTTCATATAAAGA
390 TAGGATGGGTGACC-TCCGGGAAGTCCTCGTGTTGCACCCTCTCCAATTTTATTTCATATAAAGT
* ** *
33151629 TTTTTTTAGTTAAATTTTCTAAACATGGTGTAACTAATTAGTTATTTGCGTTTTGTGAAACAAAT
454 TTTTTTTAGTTAAATTTTCTAAACGTGGTGTAACTAATTAGTTATTTGCGTTTTGCAAAATAAAT
*
33151694 AATTTCAAATGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGC
519 AATTTCAAATGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGAGATAAGGGGCAGC
*
33151759 TTTTATATAAATAGATTGCGCA
584 CTTTATATAAATAGATTGCGCA
* *
33151781 AGAGTTGACGGGTACGATCATACCAGCTCTGATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
1 AGAGTTGACGGGTACGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
* * * * *
33151846 TGTGCTTAGGCT-AGATTAGTACTAGG-TTGGGTGACCTCCAGGGAAGTCCTCATGTTGCACCCA
66 CGTGCTT-GGGTGAGAGTAGTACTAGGATT-GGTGACCTCCAGGGAAGTCCTCGTGTTGCACCCC
* * * * *
33151909 TCCCGTTTTATTTCATATCACGTTGTTTTTCGTTGCGTTTTCTACACGTGGTGTAACTAATTAGT
129 TCCCATTTTATTTCATATAAAGTTGTTTTTAGTTGCATTTTCTACAC-TGGTGTAACTAATTAGT
* * * * *
33151974 TATTTGCATTTTGCGAAACAAATAATTTCAAATGTTATTTGGTCGAATTTGC-TTCAAATTCGAG
193 AATTTGCATTTTGCGAAATAAAAAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAATTCGAG
* * * *
33152038 GCGCAAGTGCGATAAGGGGCAGCTTTTATATAAATAGATTGTGCAAGAGTTTACGGGTACGATCA
258 GCGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
* * *
33152103 TACCAGCTCTGATGCA-ATGGATCCCATCAGAACTCCGCAGTTAAGTGTGCTTAGGCTAGAT--T
323 TACCAGCTCTAATGCACA-GGATCCCATCAGAACTCCGCAGTTAAGCGTGCTT--GCGAGATAGT
* *
33152165 AGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCATGTTGCACCCATC-CC-ATTTTATTTCATA
385 AGTACTAGGATGGGTGACCTCC-GGGAAGTCCTCGTGTTGCACCC-TCTCCAATTTTATTTCATA
* * *** ** * *
33152228 TAACGTTGTTTTTCA-TTGCGTTTTCTGCACGTGGTGTAACTAATTAGTTATTTTCATTTTGCAA
448 TAAAGTT-TTTTTTAGTTAAATTTTCTAAACGTGGTGTAACTAATTAGTTATTTGCGTTTTGCAA
* * *
33152292 AATAAATAATTTAAAATATTATTTGGCCGAATTTGC
512 AATAAATAATTTCAAATGTTATTTGGTCGAATTTGC
33152328 GCGAGAGTAG
Statistics
Matches: 1515, Mismatches: 197, Indels: 77
0.85 0.11 0.04
Matches are distributed among these distances:
595 1 0.00
596 119 0.08
597 2 0.00
598 2 0.00
599 21 0.01
600 4 0.00
601 534 0.35
602 6 0.00
603 3 0.00
604 7 0.00
605 245 0.16
606 95 0.06
607 381 0.25
608 11 0.01
609 84 0.06
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (605 bp):
AGAGTTGACGGGTACGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
CGTGCTTGGGTGAGAGTAGTACTAGGATTGGTGACCTCCAGGGAAGTCCTCGTGTTGCACCCCTC
CCATTTTATTTCATATAAAGTTGTTTTTAGTTGCATTTTCTACACTGGTGTAACTAATTAGTAAT
TTGCATTTTGCGAAATAAAAAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCG
CAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATAC
CAGCTCTAATGCACAGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGCGAGATAGTAGTACT
AGGATGGGTGACCTCCGGGAAGTCCTCGTGTTGCACCCTCTCCAATTTTATTTCATATAAAGTTT
TTTTTAGTTAAATTTTCTAAACGTGGTGTAACTAATTAGTTATTTGCGTTTTGCAAAATAAATAA
TTTCAAATGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGAGATAAGGGGCAGCCT
TTATATAAATAGATTGCGCA
Found at i:33152511 original size:195 final size:194
Alignment explanation
Indices: 33152164--33152522 Score: 508
Period size: 195 Copynumber: 1.8 Consensus size: 194
33152154 TAGGCTAGAT
* *
33152164 TAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCATGTTGCACCCATCCCATTTTATTTCATAT
1 TAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCATGTTGCACCCATCCCATTTGACTTCATAT
* ** ** * *
33152229 AACGTTGTTTTTCATTGCGTTTTCTGCACGTGGTGTAACTAATTAGTTATTTTCATTTTGCAAAA
66 AAC-TTGTTTTTCATAGAATTTTCTAAACGTGGTGTAACTAATTAGTTATTTGCATTGTGCAAAA
*
33152294 TAAATAATTTAAAATATTATTTGGCCGAATTTGCGCGAGAGTAGCTAAGCGTGCTTGGGCGAGGG
130 TAAATAATTTAAAACATTATTTGGCCGAATTTGCGCGAGAGTAGCTAAGCGTGCTTGGGCGAGGG
* *
33152359 TAGTGCTAGGATT-GGTGACCTCCTGGGAAGTCCTCATGTTGCACCCCTCCCATTTGACTTCATA
1 TAGTACTAGG-TTGGGTGACCTCCTGGGAAGTCCTCATGTTGCACCCATCCCATTTGACTTCATA
*
33152423 TAA-TT-TTTTTCCTAGTAGAATTTTCTAAACGTGGTGTAACTAATTAGTTATTTGCATTGTGCG
65 TAACTTGTTTTT-C-A-TAGAATTTTCTAAACGTGGTGTAACTAATTAGTTATTTGCATTGTGCA
* * *
33152486 AAATAAATAATTTGAAACGTTATTTGGTCGAATTTGC
127 AAATAAATAATTTAAAACATTATTTGGCCGAATTTGC
33152523 ATTCAAATTC
Statistics
Matches: 144, Mismatches: 16, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
192 5 0.03
193 3 0.02
194 1 0.01
195 133 0.92
196 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.38
Consensus pattern (194 bp):
TAGTACTAGGTTGGGTGACCTCCTGGGAAGTCCTCATGTTGCACCCATCCCATTTGACTTCATAT
AACTTGTTTTTCATAGAATTTTCTAAACGTGGTGTAACTAATTAGTTATTTGCATTGTGCAAAAT
AAATAATTTAAAACATTATTTGGCCGAATTTGCGCGAGAGTAGCTAAGCGTGCTTGGGCGAGGG
Found at i:33153336 original size:303 final size:300
Alignment explanation
Indices: 33152788--33154479 Score: 1783
Period size: 303 Copynumber: 5.7 Consensus size: 300
33152778 TGCGTTTTGC
* *
33152788 GTTATTTGGTCGAATTTGCATTCAAATTCGAGGCACAAGTGCCATAAGGGGCAGCCTTTATATAA
1 GTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAA
* * * * * * *
33152853 ACAGATTGCGCAAGAGTTAACGAGTGCCACCATGCCAACACTAATGCACCGGATCCCATCAAAAC
66 ATAGATTGCGCAAGAGTTAACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAAC
* *
33152918 TCCACAGTTAAGCGTGCTTCGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTCGT
131 TCCACAGTTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGT
* * * *
33152983 GTTGCACCCCTCCCATTTTATTTTATATAAAGTTTTTTTTCGTTGAATTTTCTACACGTGGTGTA
196 GTTGCACCCCTCCAATTTTATTTCATATAAAGTTTTTTTTAGTTGAATTTTCTAAACGTGGTGTA
*
33153048 ACTAATTAGTAATTTGCGTTTTGCTAATTAAATAATTTGAAA
261 ACTAATTAGTTATTTGCGTTTTGC-AA-TAAATAATTTGAAA
* * * * *
33153090 TGTTATTTTGTCGAATGTGCATTCAAATTTGAGGCGCAAGTGCGATAAGGGCCAGCCTTCATATA
1 -GTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATA
** * **
33153155 AATAGATTGCGCAAGAGTTGGCGGGTGCGATCATACCAGCACTAATGTACCTTATCCCATCAGAA
65 AATAGATTGCGCAAGAGTTAACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAA
* * * * * * * * * * * *
33153220 CTCCGCAGCTAAGAGTGCATGGGCGAGAGTAGTACTACGTTTGCTGAACTCCTGCGAAGTCCTTG
130 CTCCACAGTTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCG
* * * * * *
33153285 TGATGCACCCCTTCTATTTTACTTCATATAAAGTTTTATTTAGTAGAATTTTCTAAACGTGGTGT
195 TGTTGCACCCCTCCAATTTTATTTCATATAAAGTTTTTTTTAGTTGAATTTTCTAAACGTGGTGT
* * * ** *
33153350 GACTAATTACTTATATGCAATTTGCGAAATAAATAATTTCTAAA
260 AACTAATTAGTTATTTGCGTTTTGC--AATAAATAATTT-GAAA
* * * *
33153394 GTTATTTGGTCGAATTTGTATTCAAATTCGAGGCACAAGTGCGATAGGGGGTAGCCTTTATATAA
1 GTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAA
* * * *** * *
33153459 ATAGATTGCGTAAGAGTTGACGGGTGTGATCATACCAGTTGTAATGCGCCGGATCCCATTAGAAC
66 ATAGATTGCGCAAGAGTTAACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAAC
* ** *
33153524 TCCGCAGTTAATTGTGCTTGCGG-GAGAGTAGTACTAGGATGGGTGACCTTCCTGGGAAGTCCTC
131 TCCACAGTTAAGCGTGCTTG-GGCAAGAGTAGTACTAGGATGGGTGACC-TCCTGGGAAGTCCTC
* * ** *
33153588 GTGTTGCAACTCTCCAATTTTATTTCATATAAAG-TTTTTTTAACTAAATTTTCTAAACGTGGTG
194 GTGTTGCACCCCTCCAATTTTATTTCATATAAAGTTTTTTTTAGTTGAATTTTCTAAACGTGGTG
* * *
33153652 TAACTAATTAGTTATTTGTGTTTTCCGAAATAAATAATTTCAAA
259 TAACTAATTAGTTATTTGCGTTTT--GCAATAAATAATTTGAAA
* * * *
33153696 CGTTATTTGGTCGAAATTACATTCAAATTCGAGGCGCAAGAGCGATACGGGGCAGCCTTTATATA
1 -GTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATA
* * ** * * * *
33153761 AATAG-TTGCGCAAGAGTTCACGGGTGTGATCATACCATTAGTAATGCACCAGATCCTATTAGAA
65 AATAGATTGCGCAAGAGTTAACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAA
* ** * * *
33153825 GTCTGCAGTTAATCGTGCTTGCGG-GATAGTAGTACTAGGATGGGTGACCTTCCTGGGAAGTCCT
130 CTCCACAGTTAAGCGTGCTTG-GGCAAGAGTAGTACTAGGATGGGTGACC-TCCTGGGAAGTCCT
** * * *
33153889 CGTGTAACACCCTTCCAATTTTATCTCATATAAAGTTTTTTTTTAGTTGAAATTTCTAAACGTGG
193 CGTGTTGCACCCCTCCAATTTTATTTCATATAAAG-TTTTTTTTAGTTGAATTTTCTAAACGTGG
*
33153954 TGTAACTAATTAGTT-TTTCTCGTTTTGC-AT---T-ATTT----
257 TGTAACTAATTAGTTATTT-GCGTTTTGCAATAAATAATTTGAAA
* * * * * * *
33153989 G--A-----TCAAATTGGAATTCAAATTCGAGGCGTAAGTACGAAAAGGGGTAGCCTTTATATAA
1 GTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAA
** * * * *
33154047 ATAGATTGTACAAGAGTTAACTGGTGCGACCGTACCAGCACTAGTGCACCGGATCCCATC-GAAA
66 ATAGATTGCGCAAGAGTTAACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAG-AA
* * **
33154111 CTCCACAGTTAAGTGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTTA
130 CTCCACAGTTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCG
* *
33154176 TGTTTCACCCCTCCCATTTTATTTCATATAAAGTTTTTTTTAGTTGAATTTTCTAAAC---GTGT
195 TGTTGCACCCCTCCAATTTTATTTCATATAAAGTTTTTTTTAGTTGAATTTTCTAAACGTGGTGT
*
33154238 AACTAATTCGTTATTTGCGTTTTGC----------------
260 AACTAATTAGTTATTTGCGTTTTGCAATAAATAATTTGAAA
* ** ** *
33154263 GTTATTTGGTCGAATTTACAGCCAAATTTTAGGCGCAAGTGCGACAAGGGGCAGCCTTTATATAA
1 GTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAA
* *
33154328 ATAGATTGCGCAAGGGTTAACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAAAAC
66 ATAGATTGCGCAAGAGTTAACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAAC
* * *
33154393 TCCACAGTTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATTGGTGACCTCCTGGGAAGGCCTCGC
131 TCCACAGTTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGT
*
33154458 GTTGCACCCCTCCCATTTTATT
196 GTTGCACCCCTCCAATTTTATT
33154480 GAATTTGCAT
Statistics
Matches: 1167, Mismatches: 200, Indels: 66
0.81 0.14 0.05
Matches are distributed among these distances:
274 1 0.00
276 1 0.00
281 204 0.17
282 3 0.00
284 24 0.02
285 93 0.08
286 82 0.07
290 1 0.00
292 1 0.00
297 4 0.00
298 1 0.00
301 2 0.00
302 145 0.12
303 512 0.44
304 92 0.08
305 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (300 bp):
GTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAA
ATAGATTGCGCAAGAGTTAACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAAC
TCCACAGTTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGT
GTTGCACCCCTCCAATTTTATTTCATATAAAGTTTTTTTTAGTTGAATTTTCTAAACGTGGTGTA
ACTAATTAGTTATTTGCGTTTTGCAATAAATAATTTGAAA
Found at i:33154356 original size:281 final size:283
Alignment explanation
Indices: 33153394--33154479 Score: 1096
Period size: 281 Copynumber: 3.8 Consensus size: 283
33153384 AATTTCTAAA
** * * * *
33153394 GTTATTTGGTCGAATTTGTATTCAAATTCGAGGCACAAGTGCGATAGGGGGTAGCCTTTATATAA
1 GTTATTTGGTCGAATTTACATTCAAATTCGAGGCGCAAGTGCGAAAAGGGGCAGCCTTTATATAA
* * * *** * * *
33153459 ATAGATTGCGTAAGAGTTGACGGGTGTGATCATACCAGTTGTAATGCGCCGGATCCCATTAGAAC
66 ATAGATTGCGCAAGAGTTAACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAAAAC
* * * *
33153524 TCCGCAGTTAATTGTGCTTGCGG-GAGAGTAGTACTAGGATGGGTGACCTTCCTGGGAAGTCCTC
131 TCCACAGTTAAGTGTGCTTG-GGCAAGAGTAGTACTAGGATGGGTGACC-TCCTGGGAAGGCCTC
* * * * **
33153588 GTGTTGCAACTCTCCAATTTTATTTCATATAAAG--TTTTTTTAACT-AAATTTTCTAAACGTGG
194 GTGTTACACCCCTCCCATTTTATTTCATATAAAGTTTTTTTTTAGTTGAAA-TTTCTAAAC--GG
* *
33153650 TGTAACTAATTAGTTATTTGTGTTTTCCGAAATAAATAATTTCAAAC
256 TGTAACTAATTAGTT-TTT-CG-----CG-------T--TTT---GC
* * * *
33153697 GTTATTTGGTCGAAATTACATTCAAATTCGAGGCGCAAGAGCGATACGGGGCAGCCTTTATATAA
1 GTTATTTGGTCGAATTTACATTCAAATTCGAGGCGCAAGTGCGAAAAGGGGCAGCCTTTATATAA
* * ** * * * * * *
33153762 ATAG-TTGCGCAAGAGTTCACGGGTGTGATCATACCATTAGTAATGCACCAGATCCTATTAGAAG
66 ATAGATTGCGCAAGAGTTAACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAAAAC
** * * *
33153826 TCTGCAGTTAA-TCGTGCTTGCGG-GATAGTAGTACTAGGATGGGTGACCTTCCTGGGAAGTCCT
131 TCCACAGTTAAGT-GTGCTTG-GGCAAGAGTAGTACTAGGATGGGTGACC-TCCTGGGAAGGCCT
* * * *
33153889 CGTGTAACACCCTTCCAATTTTATCTCATATAAAGTTTTTTTTTAGTTGAAATTTCTAAACGTGG
193 CGTGTTACACCCCTCCCATTTTATTTCATATAAAGTTTTTTTTTAGTTGAAATTTCTAAAC--GG
*
33153954 TGTAACTAATTAGTTTTTCTCGTTTTGC
256 TGTAACTAATTAGTTTTTCGCGTTTTGC
* * * * * * *
33153982 ATTATTTGATCAAATTGGA-ATTCAAATTCGAGGCGTAAGTACGAAAAGGGGTAGCCTTTATATA
1 GTTATTTGGTCGAATT-TACATTCAAATTCGAGGCGCAAGTGCGAAAAGGGGCAGCCTTTATATA
** * * * * *
33154046 AATAGATTGTACAAGAGTTAACTGGTGCGACCGTACCAGCACTAGTGCACCGGATCCCATCGAAA
65 AATAGATTGCGCAAGAGTTAACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAAAA
**
33154111 CTCCACAGTTAAGTGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTTA
130 CTCCACAGTTAAGTGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTCG
* *
33154176 TGTTTCACCCCTCCCATTTTATTTCATATAAAG-TTTTTTTTAGTTGAATTTTCTAAAC-GTGTA
195 TGTTACACCCCTCCCATTTTATTTCATATAAAGTTTTTTTTTAGTTGAAATTTCTAAACGGTGTA
*
33154239 ACTAATTCGTTATTT-GCGTTTTGC
260 ACTAATTAGTT-TTTCGCGTTTTGC
** ** *
33154263 GTTATTTGGTCGAATTTACAGCCAAATTTTAGGCGCAAGTGCGACAAGGGGCAGCCTTTATATAA
1 GTTATTTGGTCGAATTTACATTCAAATTCGAGGCGCAAGTGCGAAAAGGGGCAGCCTTTATATAA
*
33154328 ATAGATTGCGCAAGGGTTAACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAAAAC
66 ATAGATTGCGCAAGAGTTAACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAAAAC
* * *
33154393 TCCACAGTTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATTGGTGACCTCCTGGGAAGGCCTCGC
131 TCCACAGTTAAGTGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTCGT
*
33154458 GTTGCACCCCTCCCATTTTATT
196 GTTACACCCCTCCCATTTTATT
33154480 GAATTTGCAT
Statistics
Matches: 676, Mismatches: 97, Indels: 42
0.83 0.12 0.05
Matches are distributed among these distances:
280 1 0.00
281 212 0.31
282 3 0.00
284 24 0.04
285 100 0.15
286 83 0.12
287 1 0.00
288 3 0.00
290 1 0.00
297 2 0.00
301 1 0.00
302 140 0.21
303 65 0.10
304 37 0.05
305 3 0.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (283 bp):
GTTATTTGGTCGAATTTACATTCAAATTCGAGGCGCAAGTGCGAAAAGGGGCAGCCTTTATATAA
ATAGATTGCGCAAGAGTTAACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAAAAC
TCCACAGTTAAGTGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTCGT
GTTACACCCCTCCCATTTTATTTCATATAAAGTTTTTTTTTAGTTGAAATTTCTAAACGGTGTAA
CTAATTAGTTTTTCGCGTTTTGC
Found at i:33154652 original size:206 final size:206
Alignment explanation
Indices: 33154293--33154685 Score: 626
Period size: 206 Copynumber: 1.9 Consensus size: 206
33154283 GCCAAATTTT
* * *
33154293 AGGCGCAAGTGCGACAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGGGTTAACGGGTGCGAT
1 AGGCGCAAATGCGACAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTAACGGGTGCAAT
*
33154358 CATACCAGCACTAATGCACCGGATCCCATCAAAACTCCACAGTTAAGCGTGCTTGGGCAAGAGTA
66 CATACCAGCACTAATGCAACGGATCCCATCAAAACTCCACAGTTAAGCGTGCTTGGGCAAGAGTA
*
33154423 GTACTAGGATTGGTGACCTCCTGGGAAGGCCTCGCGTTGCACCCCTCCCATTTTATTGAATTTGC
131 GTACTAGGATTGGTGAACTCCTGGGAAGGCCTCGCGTTGCACCCCTCCCATTTTATTGAATTTGC
33154488 ATTCAAATTCG
196 ATTCAAATTCG
* * *
33154499 AGGCGCAAATGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTTCAAT
1 AGGCGCAAATGCGACAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTAACGGGTGCAAT
* * * **
33154564 CATACCAGCACTAATGTAACGGATCCCATCAGAACTCTACAGCTT-AGCGTGCTTGGGTGAGAGT
66 CATACCAGCACTAATGCAACGGATCCCATCAAAACTCCACAG-TTAAGCGTGCTTGGGCAAGAGT
* * *
33154628 AGTACTAGGATTGGTGAACTCCTGGGAAGTCCTTGTGTTGCACCCCTCCCATTTTATT
130 AGTACTAGGATTGGTGAACTCCTGGGAAGGCCTCGCGTTGCACCCCTCCCATTTTATT
33154686 TCATATATAG
Statistics
Matches: 170, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
206 168 0.99
207 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (206 bp):
AGGCGCAAATGCGACAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTAACGGGTGCAAT
CATACCAGCACTAATGCAACGGATCCCATCAAAACTCCACAGTTAAGCGTGCTTGGGCAAGAGTA
GTACTAGGATTGGTGAACTCCTGGGAAGGCCTCGCGTTGCACCCCTCCCATTTTATTGAATTTGC
ATTCAAATTCG
Found at i:33155397 original size:303 final size:302
Alignment explanation
Indices: 33154480--33155397 Score: 1094
Period size: 303 Copynumber: 3.0 Consensus size: 302
33154470 CCATTTTATT
*
33154480 GAATTTGCATTCAAATTCGAGGCGCAAATGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGC
1 GAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGC
* * * * * * *
33154545 AAGAGTTGACGGGTTCAATCATACCAGCACTAATGTAACGGATCCCATCAGAACTCTACAGCTTA
66 AAGAGTTGACGGGTACAATCATACCAACGCTAATGCACCGGATCCCATCAGAACTCCACAGCTAA
** * * * * *
33154610 GCGTGCTTGGGTGAGAGTAGTACTAGGATTGGTGAACTCCTGGGAAGTCCTTGTGTTGCACCCCT
131 GCGTGCTTGGGCAAGATTAGTACTACG-TTGGTGACCTCCAGGGAAGTCCTCGTGTTGCACCCCT
* * * *
33154675 CCCATTTTATTTCATATATAGTTTATTTTTAGTTGCATTCTCTACACGTGGTGTAACTAAGTAGT
195 CCCATTTTATTTCATATAAAG-TTATTTTTAGTTGAATTTTCTACACGTGGTGTAACTAATTAGT
* * * *
33154740 TATTTGCGTTTTGCGAAATAAAAAATTTGAAACGTTATTTGGTC
259 TATTTACGTTTTGCGAAATAAATAATTTAAAATGTTATTTGGTC
* * * * * * *
33154784 GAATTTGCATTCAAATTCAAGGCGCGAGTGCGATAGGGGGCAGCCTTTATGTAAGTAGATTGTGT
1 GAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGC
*** * *
33154849 AAGAGTTGACGGGTGTGATCATACCAACAG-TAATGCACAGGATCCCATCAGAACTCC-CTAGTT
66 AAGAGTTGACGGGTACAATCATACCAAC-GCTAATGCACCGGATCCCATCAGAACTCCAC-AGCT
* * * * *
33154912 AAGTGTGCTT--GCAAGATAGTAGTACTATGATGGGTGACCTTCTA-GGAAGTCCTCGTGTTTCA
129 AAGCGTGCTTGGGCAAGAT--TAGTACTACG-TTGGTGACC-TCCAGGGAAGTCCTCGTGTTGCA
* * * * * * * *
33154974 CCTCTCCAATTTTATTTCATATGAAGTTTTTTTTAGTTAAAATTTCTAAACGTGGTGTAAGTAAT
190 CCCCTCCCATTTTATTTCATATAAAGTTATTTTTAGTTGAATTTTCTACACGTGGTGTAACTAAT
*
33155039 TAGTTATTTACGTTTTGCGAAATAAATAATTTCAAATGTTATTTGGTC
255 TAGTTATTTACGTTTTGCGAAATAAATAATTTAAAATGTTATTTGGTC
* * * *
33155087 AAATTTGCATTCAAATTGGAGGCGCAAGTGAGATAAGGGGCAGCCTTTATATAAATAGGTTGCGC
1 GAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGC
* * * *
33155152 AAGAGTTGATGGGAACCATCATACCAACGCTAGTGCACCGGATCCCATCAGAACTCCACAGCTAA
66 AAGAGTTGACGGGTACAATCATACCAACGCTAATGCACCGGATCCCATCAGAACTCCACAGCTAA
* *
33155217 GCGCGATTGGGCAAGATTAGTACTACGTTGTGTGACCTCCAGGGAAGTCCTCGTGTTGCACCCCT
131 GCGTGCTTGGGCAAGATTAGTACTACGTTG-GTGACCTCCAGGGAAGTCCTCGTGTTGCACCCCT
* * * * *
33155282 CCCATTTTATTTCATTTAAAGTTGTTTCTCGTTGTATTTTCTACACGTGGTGTAACTAATTAGTT
195 CCCATTTTATTTCATATAAAGTTATTTTTAGTTGAATTTTCTACACGTGGTGTAACTAATTAGTT
* *
33155347 AATTT-CATTTTGCGAAATAAATATTTTAAAATGTTATTTGG-C
260 -ATTTACGTTTTGCGAAATAAATAATTTAAAATGTTATTTGGTC
33155389 TGAATTTGC
1 -GAATTTGC
33155398 GCGAGAGTAG
Statistics
Matches: 513, Mismatches: 88, Indels: 27
0.82 0.14 0.04
Matches are distributed among these distances:
302 11 0.02
303 318 0.62
304 175 0.34
305 9 0.02
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (302 bp):
GAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGC
AAGAGTTGACGGGTACAATCATACCAACGCTAATGCACCGGATCCCATCAGAACTCCACAGCTAA
GCGTGCTTGGGCAAGATTAGTACTACGTTGGTGACCTCCAGGGAAGTCCTCGTGTTGCACCCCTC
CCATTTTATTTCATATAAAGTTATTTTTAGTTGAATTTTCTACACGTGGTGTAACTAATTAGTTA
TTTACGTTTTGCGAAATAAATAATTTAAAATGTTATTTGGTC
Found at i:33155599 original size:802 final size:802
Alignment explanation
Indices: 33154612--33156169 Score: 2065
Period size: 802 Copynumber: 1.9 Consensus size: 802
33154602 ACAGCTTAGC
* * * *
33154612 GTGCTTGGGTGAGAGTAGTACTAGGATTGGTGAACTCCTGGGAAGTCCTTGTGTTGCACCCCTCC
1 GTGCTTGGGCGAGACTAGTACTAGGATTGGTGAACTCCTGGAAAGTCCTCGTGTTGCACCCCTCC
* * * * *
33154677 CATTTTATTTCATATATAGTTTATTTTTAGTTGCATTCTCTACACGTGGTGTAACTAAGTAGTTA
66 CATTTTATTTCATATAAAGTTTATTTTAAGTAGAATTCTCTAAACGTGGTGTAACTAAGTAGTTA
* *
33154742 TTTGCGTTTTGCGAAATAAAAAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAATTCAAGGC
131 TTTGCGTTTTCCGAAATAAAAAACTTGAAACGTTATTTGGTCGAATTTGCATTCAAATTCAAGGC
* * * * * * * * * * *
33154807 GCGAGTGCGATAGGGGGCAGCCTTTATGTAAGTAGATTGTGTAAGAGTTGACGGGTGTGATCATA
196 ACAAGTGCGATAAGGGGCAGCCTTTATATAAATAGACTGCGCAAGAGTTAACGGGTGCGACCATA
* * ** *
33154872 CCAACAGTAATGCACAGGATCCCATCAGAACTCC-CTAGTTAAGTGTGCTT-GCAAGATAGTAGT
261 CCAACACTAATGCACAGGATCCCATCAAAACTCCAC-AGTTAAAAGTGCTTGGC-AG-GAGTAGT
* * * * * *
33154935 ACTATGATGGGTGACCTTCTAGGAAGTCC-TCGTGTTTCACCTCTCCAATTTTATTTCATATGAA
323 ACTAGGATGGGTGACCTCCTAGGAAGGCCAT-ATGTTTCACCCCTCCAATTTTATTTCATATAAA
* * *
33154999 G-TTTTTTTTAGTTAAAATTTCTAAACGTGGTGTAAGTAATTAGTTATTTACGTTTTGCGAAATA
387 GTTTTTTTTTAGTTAAAATTTCTAAACATGGTGTAACTAATTAGTAATTTACGTTTTGCGAAATA
* * *
33155063 AATAATTTCAAATGTTATT-TGGTCAAATTTGCATTCAAATTGGAGGCGCAAGTGA-GATAAGGG
452 AATAATTTCAAACGTTATTCT-GTCAAATGTGCATTCAAATTCGAGGCGCAAGT-ACGATAAGGG
* * * * * *
33155126 GCAGCCTTTATATAAATAGGTTGCGCAAGAGTTGATGGGAACCATCATACCAACGCTAGTGCACC
515 CCAGCCTTTAAATAAATAGATTGCGCAAGAGTTGACGGGAACCATCATACCAACACTAATGCACC
* * * ** * *
33155191 GGATCCCATCAGAACTCCACAGCTAAGCGCGATTGGGCAAGATTAGTACTACGTTGTGTGACC-T
580 GGATCCCATCAAAACTACACAGCTAAGCGCGATTGGGCAAGAGTAGTACTACGACGGGTAACCTT
* * * * *
33155255 CCAGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATTTAAAGTTGTTTCTCGTTGTATT
645 CCAGGGAAGTCCTCGTGTTGCA-CCCTCCAATTTTATTTCATATAAACTTGTTTCTAGTTGAATT
* * *
33155320 TTCTACACGTGGTGTAACTAATTAGTTAATTT-CATTTTGCGAAATAAATATTTTAAAATGTTAT
709 TTATAAACGTGGTGTAACTAATTAGTT-ATTTGCATTTTCCGAAATAAATATTTTAAAATGTTAT
33155384 TTGGCTGAATTTGCGCGAGAGTAGCTAAGT
773 TTGGCTGAATTTGCGCGAGAGTAGCTAAGT
*
33155414 GTGCTTGGGCGAGACTAGTACTAGGATTGGTGACCTCCTGGAAAGTCCTCGTGTTGCACCCCTCC
1 GTGCTTGGGCGAGACTAGTACTAGGATTGGTGAACTCCTGGAAAGTCCTCGTGTTGCACCCCTCC
* *
33155479 CATTTT-TCTTCATATAAAGTTT-TTTTCAAGTAGAATTTTCTAAACGTGGTGTAACTAATTAGT
66 CATTTTAT-TTCATATAAAGTTTATTTT-AAGTAGAATTCTCTAAACGTGGTGTAACTAAGTAGT
** * *
33155542 TATTTGCGTTTTCCGAAATAAGTAACTTGAAACGTTATTTGGTCGAATTTTCATTCAAATTCGAG
129 TATTTGCGTTTTCCGAAATAAAAAACTTGAAACGTTATTTGGTCGAATTTGCATTCAAATTCAAG
33155607 GCACAAGTGCGATAAGGGGCAGCCTTTATATAAATAGACTGCGCAAGAGTTAACGGGTGCGACCA
194 GCACAAGTGCGATAAGGGGCAGCCTTTATATAAATAGACTGCGCAAGAGTTAACGGGTGCGACCA
* * *
33155672 TACCAGCACTAGTGCACCGGATCCCATCAAAACTCCACAGTTAAAAGTGCTTGGGCAGGAGTAGT
259 TACCAACACTAATGCACAGGATCCCATCAAAACTCCACAGTTAAAAGTGCTT-GGCAGGAGTAGT
* * *
33155737 ACTGGGATGGGTGACCTCCTGGGAAGGCCATATGTTTCACCCCTCCCATTTTATTTCATATAAAG
323 ACTAGGATGGGTGACCTCCTAGGAAGGCCATATGTTTCACCCCTCCAATTTTATTTCATATAAAG
* * * * * *
33155802 TTTTTTTTTCGTTGAATTTTCTACACATGGTGTAACTAATTAGTAATTTGCGTTTTGTGAAATAA
388 TTTTTTTTTAGTTAAAATTTCTAAACATGGTGTAACTAATTAGTAATTTACGTTTTGCGAAATAA
* *
33155867 ATAATTTGAAACGTTATTCTGTCGAATGTGCATTCAAATTCGAGGCGCAAGTACGATAAGGGCCA
453 ATAATTTCAAACGTTATTCTGTCAAATGTGCATTCAAATTCGAGGCGCAAGTACGATAAGGGCCA
** * ** *
33155932 GCCTTTAAATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCGGCACTAATGTACCGGA
518 GCCTTTAAATAAATAGATTGCGCAAGAGTTGACGGGAACCATCATACCAACACTAATGCACCGGA
** * * ** * *
33155997 TCCCATCAAAACTACGTAGCTAAGCGTGCTTGGGTGAGAGTAGTACTAGGACGGGTAACCTTCCT
583 TCCCATCAAAACTACACAGCTAAGCGCGATTGGGCAAGAGTAGTACTACGACGGGTAACCTTCCA
* *
33156062 GGGAAGTCCTCGTGTTGCACCCTCCAATTTTATTTCATATAAACTTTTTTTTAGTTGAATTTTAT
648 GGGAAGTCCTCGTGTTGCACCCTCCAATTTTATTTCATATAAACTTGTTTCTAGTTGAATTTTAT
*
33156127 AAACGTGGTGTAACTAATTAGTTATTTGCGTTTTCCGAAATAA
713 AAACGTGGTGTAACTAATTAGTTATTTGCATTTTCCGAAATAA
33156170 GTAACTTGAA
Statistics
Matches: 647, Mismatches: 98, Indels: 21
0.84 0.13 0.03
Matches are distributed among these distances:
801 5 0.01
802 330 0.51
803 287 0.44
804 25 0.04
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (802 bp):
GTGCTTGGGCGAGACTAGTACTAGGATTGGTGAACTCCTGGAAAGTCCTCGTGTTGCACCCCTCC
CATTTTATTTCATATAAAGTTTATTTTAAGTAGAATTCTCTAAACGTGGTGTAACTAAGTAGTTA
TTTGCGTTTTCCGAAATAAAAAACTTGAAACGTTATTTGGTCGAATTTGCATTCAAATTCAAGGC
ACAAGTGCGATAAGGGGCAGCCTTTATATAAATAGACTGCGCAAGAGTTAACGGGTGCGACCATA
CCAACACTAATGCACAGGATCCCATCAAAACTCCACAGTTAAAAGTGCTTGGCAGGAGTAGTACT
AGGATGGGTGACCTCCTAGGAAGGCCATATGTTTCACCCCTCCAATTTTATTTCATATAAAGTTT
TTTTTTAGTTAAAATTTCTAAACATGGTGTAACTAATTAGTAATTTACGTTTTGCGAAATAAATA
ATTTCAAACGTTATTCTGTCAAATGTGCATTCAAATTCGAGGCGCAAGTACGATAAGGGCCAGCC
TTTAAATAAATAGATTGCGCAAGAGTTGACGGGAACCATCATACCAACACTAATGCACCGGATCC
CATCAAAACTACACAGCTAAGCGCGATTGGGCAAGAGTAGTACTACGACGGGTAACCTTCCAGGG
AAGTCCTCGTGTTGCACCCTCCAATTTTATTTCATATAAACTTGTTTCTAGTTGAATTTTATAAA
CGTGGTGTAACTAATTAGTTATTTGCATTTTCCGAAATAAATATTTTAAAATGTTATTTGGCTGA
ATTTGCGCGAGAGTAGCTAAGT
Found at i:33155969 original size:304 final size:305
Alignment explanation
Indices: 33155409--33158305 Score: 3465
Period size: 304 Copynumber: 9.6 Consensus size: 305
33155399 CGAGAGTAGC
* * * *
33155409 TAAGTGTGCTTGGGC-GAGACTAGTACTAGGATTGGTGACCTCCTGGAAAGTCCTCGTGTTGCAC
1 TAAGCGTGCTTGGGCAGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCAC
** * *
33155473 CCCTCCCATTTT-TCTTCATATAAAGTTTTTTTCAAGTAGAATTTTCTAAACGTGGTGTAACTAA
66 CCCTCCCATTTTAT-TTCATATAAAGTTTTTTTTTAGTTGAATTTTCTACACGTGGTGTAACTAA
* * * *
33155537 TTAGTTATTTGCGTTTTCCGAAATAAGTAACTTGAAACGTTATTTGGTCGAATTTTCATTCAAAT
130 TTAGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAAT
* * * *
33155602 TCGAGGCACAAGTGCGATAAGGGGCAGCCTTTATATAAATAGACTGCGCAAGAGTTAACGGGTGC
195 TCGAGGCGCAAGTGCGATAAGGGCCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGC
* * *
33155667 GACCATACCAGCACTAGTGCACCGGATCCCATCAAAACTCCACAGT
260 GATCATACCAGCACTAATGCACCGGATCCCATCAAAACTCCGCAGT
** * * * *
33155713 TAAAAGTGCTTGGGCAG-GAGTAGTACTGGGATGGGTGACCTCCTGGGAAGGCCAT-ATGTTTCA
1 TAAGCGTGCTTGGGCAGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCC-TCGTGTTGCA
* *
33155776 CCCCTCCCATTTTATTTCATATAAAGTTTTTTTTTCGTTGAATTTTCTACACATGGTGTAACTAA
65 CCCCTCCCATTTTATTTCATATAAAGTTTTTTTTTAGTTGAATTTTCTACACGTGGTGTAACTAA
* * *
33155841 TTAGTAATTTGCGTTTTGTGAAATAAATAATTTGAAACGTTATTCT-GTCGAATGTGCATTCAAA
130 TTAGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATT-TGGTCGAATTTGCATTCAAA
* *
33155905 TTCGAGGCGCAAGTACGATAAGGGCCAGCCTTTAAATAAATAGATTGCGCAAGAGTTGACGGGTG
194 TTCGAGGCGCAAGTGCGATAAGGGCCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTG
* * * * *
33155970 CGATCATACCGGCACTAATGTACCGGATCCCATCAAAACTACGTAGC
259 CGATCATACCAGCACTAATGCACCGGATCCCATCAAAACTCCGCAGT
* * *
33156017 TAAGCGTGCTTGGG-TGAGAGTAGTACTAGGACGGGTAACCTTCCTGGGAAGTCCTCGTGTTGCA
1 TAAGCGTGCTTGGGCAGAGAGTAGTACTAGGATGGGTGACC-TCCTGGGAAGTCCTCGTGTTGCA
* * * *
33156081 -CCCTCCAATTTTATTTCATATAAA-CTTTTTTTTAGTTGAATTTTATAAACGTGGTGTAACTAA
65 CCCCTCCCATTTTATTTCATATAAAGTTTTTTTTTAGTTGAATTTTCTACACGTGGTGTAACTAA
* * * **
33156144 TTAGTTATTTGCGTTTTCCGAAATAAGTAACTTGAAACGTTATTTGGTCGAATTTAAATTCAAAT
130 TTAGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAAT
* * * ** * * *
33156209 TCGATGCGCAAGTACGAAAAGGGGTAGCCTTTATATAAATAGATTACGGAAGAGTTAACGGGTGC
195 TCGAGGCGCAAGTGCGATAAGGGCCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGC
* * *
33156274 GACCATACCAGCACTAGTGCACCGGATCCCATCAAAACTCCACAGT
260 GATCATACCAGCACTAATGCACCGGATCCCATCAAAACTCCGCAGT
* * * *
33156320 TAA-CAGTGCTTGGGCAG-GAGTAGTACTGGGATGGGTGACCTCCTGGGAAGGCCAT-ATGTTTC
1 TAAGC-GTGCTTGGGCAGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCC-TCGTGTTGC
* *
33156382 ACCCCTCCCATTTTATTTCATATAAAGTTTTTTTTTCGTTGAATTTTCTACACATGGTGTAACTA
64 ACCCCTCCCATTTTATTTCATATAAAGTTTTTTTTTAGTTGAATTTTCTACACGTGGTGTAACTA
* * *
33156447 ATTAGTAATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTTGTCGAATGTGCATTCAAA
129 ATTAGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAA
* *
33156512 TTCGAGGCGCAAGTACGATAAGGGCCAGCCTTTAAATAAATAGATTGCGCAAGAGTTGACGGGTG
194 TTCGAGGCGCAAGTGCGATAAGGGCCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTG
* * * * *
33156577 CGATCATACCGGCACTAATGTACCGGATCCCATCAAAACTACGTAGC
259 CGATCATACCAGCACTAATGCACCGGATCCCATCAAAACTCCGCAGT
* * *
33156624 TAAGCGTGCTTGGGC-GAGAGTAGTACTAGGACGGGTAACCTTCCTGGGAAGTCCTTGTGTTGCA
1 TAAGCGTGCTTGGGCAGAGAGTAGTACTAGGATGGGTGACC-TCCTGGGAAGTCCTCGTGTTGCA
* * * *
33156688 -CCCTCCAATTTTATTTCATATAAA-CTTTTTTTTAGTTGAATTTTATAAACGTGGTGTAACTAA
65 CCCCTCCCATTTTATTTCATATAAAGTTTTTTTTTAGTTGAATTTTCTACACGTGGTGTAACTAA
*
33156751 TTAGTTATTTGCGTTTTGCG------------T------TT-TTTGGTTGAATTTGCATTCAAAT
130 TTAGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAAT
* * * *
33156797 TCGAGGCGCAAGTGCAATAAGAGG-CAACCTTTATATAAATAGATTGCACAAGAGTTAACGGGTG
195 TCGAGGCGCAAGTGCGATAAG-GGCCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTG
* * *
33156861 CGACCATACCAACACTAATGCACCGGATCCCATCAAAACTCCACAGT
259 CGATCATACCAGCACTAATGCACCGGATCCCATCAAAACTCCGCAGT
* * * *
33156908 TAAGCGTGCTTGGGC-TAGAGTAGTACTAGAATGGGTGACCTCCTGGGAAGGCCTCGTGTTGCAT
1 TAAGCGTGCTTGGGCAGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCAC
*
33156972 CCCTCCCATTTTATTTCATATAAAGTTTTTTTTTCGTTGAATTTTCTACACGTGGTGTAACTAAT
66 CCCTCCCATTTTATTTCATATAAAGTTTTTTTTTAGTTGAATTTTCTACACGTGGTGTAACTAAT
* * * * *
33157037 TAGTAATTTGCATTTTGCGAAATAAATAATTTGAAACATTATTTTGTCGAATGTGCATTCAAATT
131 TAGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAATT
* * * * *
33157102 CAAGGCGAAAGTGCGATAATGGCCAGCCTTTATATAAATAGATTACGCAAGAGTTGATGGGTGCG
196 CGAGGCGCAAGTGCGATAAGGGCCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCG
* * * *
33157167 ATCATACCAGCACTAATGTACCGGATCCCATCAGAATTCCGCAGC
261 ATCATACCAGCACTAATGCACCGGATCCCATCAAAACTCCGCAGT
* * * * *
33157212 TAAGCGTGCTTGGGCA-AGAGTAGTACTAGGATTGGTGAACTCCTTGGAAGTCCTTGGGTTGCAC
1 TAAGCGTGCTTGGGCAGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCAC
* * * *
33157276 CCCTCCCATTTTATTTCATATAAAGTTTATTTTTAGATGCATTTTCTACACGTAGTGTAACTAAT
66 CCCTCCCATTTTATTTCATATAAAGTTTTTTTTTAGTTGAATTTTCTACACGTGGTGTAACTAAT
* * * * **
33157341 TAGTAATTTGTGTTTTGTGAAATAAAAAATTTGAAACGTTATTTGGTCGAATTTAAATTCAAATT
131 TAGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAATT
* * * * * *
33157406 CGAGACGCAAGTGCGATAGGGGGCAGCCTTTATATAAATAGATTGCGTAAGAGTTGACGGTTGTG
196 CGAGGCGCAAGTGCGATAAGGGCCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCG
* * * * * * *
33157471 ATCATACCAGTAGTATTGCACAGGATCCCATTAGAACTCCGTAGT
261 ATCATACCAGCACTAATGCACCGGATCCCATCAAAACTCCGCAGT
* * *
33157516 TAAGCGTGCTTGCGG--GATAGTAGTACTATGATGGGAGACCTTCC-GGGAAGTCCTCGTGTTGC
1 TAAGCGTGCTTG-GGCAGAGAGTAGTACTAGGATGGGTGACC-TCCTGGGAAGTCCTCGTGTTGC
* * * * * * * *
33157578 ACCTCTCCAATTTTATTTCATAAAAAGTATTTTTTTAGTTAAAGTTTCTAAATGTGGTGTAACTA
64 ACCCCTCCCATTTTATTTCATATAAAGTTTTTTTTTAGTTGAATTTTCTACACGTGGTGTAACTA
* * * *
33157643 ATTAGTTATTTGCATTTTGCGAAATAAATAATTTCAAACGTTATTTGGTCAAATTTGCATTCTAA
129 ATTAGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAA
* ** * * * ** * *
33157708 TTCGAGGCGAAAGTGCGATTTGGGGCAACCTTTATATATATAGATTGCGTGAGAGTTAACGGCTG
194 TTCGAGGCGCAAGTGCGATAAGGGCCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTG
* * * * * * *
33157773 TGA-CAATACCAGCAGTAATGCACAGGACCCCATCAGAACTTCGTAGT
259 CGATC-ATACCAGCACTAATGCACCGGATCCCATCAAAACTCCGCAGT
* * * * * *
33157820 TAAGCGTGCTTGTG-AGATAGTAGTATTATGATGGGTGACCTTCTGGGAAGTCCTCGTTTTGCAC
1 TAAGCGTGCTTGGGCAGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCAC
* * * * * *
33157884 CTCTCCAATTATATTTCACAT-AA-TTTTTTTTTAATTAAATTTTCT-CAACGTGGTGTAACTAA
66 CCCTCCCATTTTATTTCATATAAAGTTTTTTTTTAGTTGAATTTTCTAC-ACGTGGTGTAACTAA
* * *
33157946 TTAGTTATTTGCGTTTTGCGAAAAAAATAATTTCAAACGTTATTTGGTCGAATTTGCATTCATAT
130 TTAGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAAT
* * * *
33158011 TCGAGGCGCAAGTGCGATAAGGGCCAGCCTTTCTATAAAAAGATTGCGCAATAGTTGAGGGGTGC
195 TCGAGGCGCAAGTGCGATAAGGGCCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGC
* *
33158076 AATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGT
260 GATCATACCAGCACTAATGCACCGGATCCCATCAAAACTCCGCAGT
* * * ** * *
33158122 TAAGTGTACTTGGGC-GAGATTAGTACTAGTTTGGGTGACCTCCAGGGAAGTCCTCATGTTGCAC
1 TAAGCGTGCTTGGGCAGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCAC
* * * * **
33158186 CCCTCTCGTTTTATTTCATATAAAG-TTGTTTTTCGTTTCATTTTCTACACGTGGTGTAACTAAT
66 CCCTCCCATTTTATTTCATATAAAGTTTTTTTTTAGTTGAATTTTCTACACGTGGTGTAACTAAT
* * * * * * *
33158250 TACTTATTTTCATTTTGCGAAATAAATAATCTAAAACATTATTTGGCCGAATTTGC
131 TAGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATTTGC
33158306 GCGAGAGTAG
Statistics
Matches: 2209, Mismatches: 331, Indels: 107
0.83 0.13 0.04
Matches are distributed among these distances:
283 21 0.01
284 173 0.08
285 57 0.03
291 1 0.00
297 1 0.00
302 266 0.12
303 388 0.18
304 1256 0.57
305 46 0.02
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (305 bp):
TAAGCGTGCTTGGGCAGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCAC
CCCTCCCATTTTATTTCATATAAAGTTTTTTTTTAGTTGAATTTTCTACACGTGGTGTAACTAAT
TAGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAATT
CGAGGCGCAAGTGCGATAAGGGCCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCG
ATCATACCAGCACTAATGCACCGGATCCCATCAAAACTCCGCAGT
Found at i:33156663 original size:607 final size:606
Alignment explanation
Indices: 33155404--33158293 Score: 3706
Period size: 607 Copynumber: 4.8 Consensus size: 606
33155394 TTGCGCGAGA
* * * * *
33155404 GTAGCTAAGTGTGCTTGGGCGAGACTAGTACTAGGATTGGTGACC-TCCTGGAAAGTCCTCGTGT
1 GTAGCTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTAACCTTCCTGGGAAGTCCTCGTGT
* * * *
33155468 TGCACCCCTCCCATTTT-TCTTCATATAAAGTTTTTTTCAAGTAGAATTTTCTAAACGTGGTGTA
66 TGCA-CCCTCCAATTTTAT-TTCATATAAACTTTTTTT-TAGTTGAATTTTCTAAACGTGGTGTA
* *
33155532 ACTAATTAGTTATTTGCGTTTTCCGAAATAAGTAACTTGAAACGTTATTTGGTCGAATTTTCATT
128 ACTAATTAGTTATTTGCGTTTTCCGAAATAAATAACTTGAAACGTTATTTGGTCGAATTTACATT
* *
33155597 CAAATTCGAGGCACAAGTGCGATAAGGGGCAGCCTTTATATAAATAGACTGCGCAAGAGTTAACG
193 CAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTAACG
* *
33155662 GGTGCGACCATACCAGCACTAGTGCACCGGATCCCATCAAAACTCCACAGTTAAAAGTGCTTGGG
258 GGTGCGACCATACCAGCACTAATGCACCGGATCCCATCAAAACTCCACAGTT-AACGTGCTTGGG
* *
33155727 CAGGAGTAGTACTGGGATGGGTGACCTCCTGGGAAGGCCAT-ATGTTTCACCCCTCCCATTTTAT
322 CAGGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCC-TCATGTTGCACCCCTCCCATTTTAT
* *
33155791 TTCATATAAAGTTTTTTTTTCGTTGAATTTTCTACACATGGTGTAACTAATTAGTAATTTGCGTT
386 TTCATATAAAGTTTTTTTTTCGTTGAATTTTCTACACGTGGTGTAACTAATTAGTAATTTGCATT
* * *
33155856 TTGTGAAATAAATAATTTGAAACGTTATTCTGTCGAATGTGCATTCAAATTCGAGGCGCAAGTAC
451 TTGCGAAATAAATAATTTGAAACGTTATTTTGTCGAATGTGCATTCAAATTCGAGGCGAAAGTAC
*
33155921 GATAAGGGCCAGCCTTTAAATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCGGCACT
516 GATAAGGGCCAGCCTTTAAATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACT
33155986 AATGTACCGGATCCCATCAAAACTAC
581 AATGTACCGGATCCCATCAAAACTAC
* *
33156012 GTAGCTAAGCGTGCTTGGGTGAGAGTAGTACTAGGACGGGTAACCTTCCTGGGAAGTCCTCGTGT
1 GTAGCTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTAACCTTCCTGGGAAGTCCTCGTGT
*
33156077 TGCACCCTCCAATTTTATTTCATATAAACTTTTTTTTAGTTGAATTTTATAAACGTGGTGTAACT
66 TGCACCCTCCAATTTTATTTCATATAAACTTTTTTTTAGTTGAATTTTCTAAACGTGGTGTAACT
* *
33156142 AATTAGTTATTTGCGTTTTCCGAAATAAGTAACTTGAAACGTTATTTGGTCGAATTTAAATTCAA
131 AATTAGTTATTTGCGTTTTCCGAAATAAATAACTTGAAACGTTATTTGGTCGAATTTACATTCAA
* * * * * *
33156207 ATTCGATGCGCAAGTACGAAAAGGGGTAGCCTTTATATAAATAGATTACGGAAGAGTTAACGGGT
196 ATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTAACGGGT
*
33156272 GCGACCATACCAGCACTAGTGCACCGGATCCCATCAAAACTCCACAGTTAACAGTGCTTGGGCAG
261 GCGACCATACCAGCACTAATGCACCGGATCCCATCAAAACTCCACAGTTAAC-GTGCTTGGGCAG
* *
33156337 GAGTAGTACTGGGATGGGTGACCTCCTGGGAAGGCCAT-ATGTTTCACCCCTCCCATTTTATTTC
325 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCC-TCATGTTGCACCCCTCCCATTTTATTTC
* *
33156401 ATATAAAGTTTTTTTTTCGTTGAATTTTCTACACATGGTGTAACTAATTAGTAATTTGCGTTTTG
389 ATATAAAGTTTTTTTTTCGTTGAATTTTCTACACGTGGTGTAACTAATTAGTAATTTGCATTTTG
*
33156466 CGAAATAAATAATTTGAAACGTTATTTTGTCGAATGTGCATTCAAATTCGAGGCGCAAGTACGAT
454 CGAAATAAATAATTTGAAACGTTATTTTGTCGAATGTGCATTCAAATTCGAGGCGAAAGTACGAT
*
33156531 AAGGGCCAGCCTTTAAATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCGGCACTAAT
519 AAGGGCCAGCCTTTAAATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAAT
33156596 GTACCGGATCCCATCAAAACTAC
584 GTACCGGATCCCATCAAAACTAC
* *
33156619 GTAGCTAAGCGTGCTTGGGCGAGAGTAGTACTAGGACGGGTAACCTTCCTGGGAAGTCCTTGTGT
1 GTAGCTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTAACCTTCCTGGGAAGTCCTCGTGT
*
33156684 TGCACCCTCCAATTTTATTTCATATAAACTTTTTTTTAGTTGAATTTTATAAACGTGGTGTAACT
66 TGCACCCTCCAATTTTATTTCATATAAACTTTTTTTTAGTTGAATTTTCTAAACGTGGTGTAACT
* * *
33156749 AATTAGTTATTT--G-----CG---T---T---TTG---CGTTTTTTGGTTGAATTTGCATTCAA
131 AATTAGTTATTTGCGTTTTCCGAAATAAATAACTTGAAACGTTATTTGGTCGAATTTACATTCAA
* * * *
33156795 ATTCGAGGCGCAAGTGCAATAAGAGGCAACCTTTATATAAATAGATTGCACAAGAGTTAACGGGT
196 ATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTAACGGGT
*
33156860 GCGACCATACCAACACTAATGCACCGGATCCCATCAAAACTCCACAGTTAAGCGTGCTTGGGCTA
261 GCGACCATACCAGCACTAATGCACCGGATCCCATCAAAACTCCACAGTTAA-CGTGCTTGGGC-A
* * *
33156925 -GAGTAGTACTAGAATGGGTGACCTCCTGGGAAGGCCTCGTGTTGCATCCCTCCCATTTTATTTC
324 GGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTCATGTTGCACCCCTCCCATTTTATTTC
33156989 ATATAAAGTTTTTTTTTCGTTGAATTTTCTACACGTGGTGTAACTAATTAGTAATTTGCATTTTG
389 ATATAAAGTTTTTTTTTCGTTGAATTTTCTACACGTGGTGTAACTAATTAGTAATTTGCATTTTG
* * *
33157054 CGAAATAAATAATTTGAAACATTATTTTGTCGAATGTGCATTCAAATTCAAGGCGAAAGTGCGAT
454 CGAAATAAATAATTTGAAACGTTATTTTGTCGAATGTGCATTCAAATTCGAGGCGAAAGTACGAT
* * * *
33157119 AATGGCCAGCCTTTATATAAATAGATTACGCAAGAGTTGATGGGTGCGATCATACCAGCACTAAT
519 AAGGGCCAGCCTTTAAATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAAT
* * *
33157184 GTACCGGATCCCATCAGAATTCC
584 GTACCGGATCCCATCAAAACTAC
* * * * * *
33157207 GCAGCTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATTGGTGAA-C-TCCTTGGAAGTCCTTGGG
1 GTAGCTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGT-AACCTTCCTGGGAAGTCCTCGTG
* * * * * *
33157270 TTGCACCCCTCCCATTTTATTTCATATAAAGTTTATTTTTAGATGCATTTTCTACACGTAGTGTA
65 TTGCA-CCCTCCAATTTTATTTCATATAAACTTT-TTTTTAGTTGAATTTTCTAAACGTGGTGTA
* * ** * * *
33157335 ACTAATTAGTAATTTGTGTTTTGTGAAATAAAAAATTTGAAACGTTATTTGGTCGAATTTAAATT
128 ACTAATTAGTTATTTGCGTTTTCCGAAATAAATAACTTGAAACGTTATTTGGTCGAATTTACATT
* * * *
33157400 CAAATTCGAGACGCAAGTGCGATAGGGGGCAGCCTTTATATAAATAGATTGCGTAAGAGTTGACG
193 CAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTAACG
* * * * * * * * * **
33157465 GTTGTGATCATACCAGTAGTATTGCACAGGATCCCATTAGAACTCCGTAGTTAAGCGTGCTTGCG
258 GGTGCGACCATACCAGCACTAATGCACCGGATCCCATCAAAACTCCACAGTTAA-CGTGCTTG-G
* * * * * * * *
33157530 GGA-TAGTAGTACTATGATGGGAGACCTTCC-GGGAAGTCCTCGTGTTGCACCTCTCCAATTTTA
321 GCAGGAGTAGTACTAGGATGGGTGACC-TCCTGGGAAGGCCTCATGTTGCACCCCTCCCATTTTA
* * * * * * * *
33157593 TTTCATAAAAAGTATTTTTTTAGTTAAAGTTTCTAAATGTGGTGTAACTAATTAGTTATTTGCAT
385 TTTCATATAAAGTTTTTTTTTCGTTGAATTTTCTACACGTGGTGTAACTAATTAGTAATTTGCAT
* * * * * *
33157658 TTTGCGAAATAAATAATTTCAAACGTTATTTGGTCAAATTTGCATTCTAATTCGAGGCGAAAGTG
450 TTTGCGAAATAAATAATTTGAAACGTTATTTTGTCGAATGTGCATTCAAATTCGAGGCGAAAGTA
** * * * * ** * * *
33157723 CGATTTGGGGCAACCTTTATATATATAGATTGCGTGAGAGTTAACGGCTGTGA-CAATACCAGCA
515 CGATAAGGGCCAGCCTTTAAATAAATAGATTGCGCAAGAGTTGACGGGTGCGATC-ATACCAGCA
* * * * * *
33157787 GTAATGCACAGGACCCCATCAGAACTTC
579 CTAATGTACCGGATCCCATCAAAACTAC
* * * * * * * *
33157815 GTAGTTAAGCGTGCTTGTGAGATAGTAGTATTATGATGGGTGACCTT-CTGGGAAGTCCTCGTTT
1 GTAGCTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTAACCTTCCTGGGAAGTCCTCGTGT
* * * * * *
33157879 TGCACCTCTCCAATTATATTTCACAT-AATTTTTTTTTAATTAAATTTTCTCAACGTGGTGTAAC
66 TGCACC-CTCCAATTTTATTTCATATAAACTTTTTTTTAGTTGAATTTTCTAAACGTGGTGTAAC
* * * * *
33157943 TAATTAGTTATTTGCGTTTTGCGAAAAAAATAATTTCAAACGTTATTTGGTCGAATTTGCATTCA
130 TAATTAGTTATTTGCGTTTTCCGAAATAAATAACTTGAAACGTTATTTGGTCGAATTTACATTCA
* * * * * * *
33158008 TATTCGAGGCGCAAGTGCGATAAGGGCCAGCCTTTCTATAAAAAGATTGCGCAATAGTTGAGGGG
195 AATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTAACGGG
* * * *
33158073 TGCAATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAA-GTGTACTTGGGC
260 TGCGACCATACCAGCACTAATGCACCGGATCCCATCAAAACTCCACAGTTAACGTG--CTTGGGC
* ** * * * *
33158137 -GAGATTAGTACTAGTTTGGGTGACCTCCAGGGAAGTCCTCATGTTGCACCCCTCTCGTTTTATT
323 AG-GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTCATGTTGCACCCCTCCCATTTTATT
* ** * * *
33158201 TCATATAAAG-TTGTTTTTCGTTTCATTTTCTACACGTGGTGTAACTAATTACTTATTTTCATTT
387 TCATATAAAGTTTTTTTTTCGTTGAATTTTCTACACGTGGTGTAACTAATTAGTAATTTGCATTT
* * *
33158265 TGCGAAATAAATAATCTAAAACATTATTT
452 TGCGAAATAAATAATTTGAAACGTTATTT
33158294 GGCCGAATTT
Statistics
Matches: 2021, Mismatches: 222, Indels: 81
0.87 0.10 0.03
Matches are distributed among these distances:
587 22 0.01
588 461 0.23
589 43 0.02
591 4 0.00
594 1 0.00
596 1 0.00
597 1 0.00
599 1 0.00
600 2 0.00
604 3 0.00
605 79 0.04
606 243 0.12
607 636 0.31
608 495 0.24
609 29 0.01
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (606 bp):
GTAGCTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTAACCTTCCTGGGAAGTCCTCGTGT
TGCACCCTCCAATTTTATTTCATATAAACTTTTTTTTAGTTGAATTTTCTAAACGTGGTGTAACT
AATTAGTTATTTGCGTTTTCCGAAATAAATAACTTGAAACGTTATTTGGTCGAATTTACATTCAA
ATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTAACGGGT
GCGACCATACCAGCACTAATGCACCGGATCCCATCAAAACTCCACAGTTAACGTGCTTGGGCAGG
AGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTCATGTTGCACCCCTCCCATTTTATTTCAT
ATAAAGTTTTTTTTTCGTTGAATTTTCTACACGTGGTGTAACTAATTAGTAATTTGCATTTTGCG
AAATAAATAATTTGAAACGTTATTTTGTCGAATGTGCATTCAAATTCGAGGCGAAAGTACGATAA
GGGCCAGCCTTTAAATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGT
ACCGGATCCCATCAAAACTAC
Found at i:33159019 original size:302 final size:301
Alignment explanation
Indices: 33158312--33159746 Score: 1604
Period size: 302 Copynumber: 4.8 Consensus size: 301
33158302 TTGCGCGAGA
* * * * *
33158312 GTAGCTAAGCGTGCTTAG-GCGACAGTAGTACTAGGATCGGTGACCTCCTGGGAAGTCCTCGTGT
1 GTAGTTAAGCGTGCTT-GCGAGATAGTAGTACTAGGATGGGTGACCTTCTGGGAAGTCCTCGTGT
* * *
33158376 TGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTA-CTAGAATTTTCTAAACGTGGTGTAAC
65 TGCACCCCTCCAATTTTATTTCATATAAAGTTTTTTTAGTTA-AATTTTCTAAACGTGGTGTAAC
* * * *
33158440 TAATTAGTTATTTTCATTTTGTGAAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCA
129 TAATTAGTAATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCA
* * *
33158505 AATTTGAGGCACAAGTGCGAT-AGGAGGTAGCCTTTATA-AAATAGATTGCGTAAGAGTTGACGG
194 AATTCGAGGCGCAAGTGCGATAAGG-GGCAGCCTTTATATAAATAGATTGCGTAAGAGTTGACGG
* *
33158568 GTGTAATCATACCAGCAGTAATGCATAGGATCGCATCAGAACTCC
258 GTGTGATCATACCAGCAGTAATGCACAGGATC-CATCAGAACTCC
* * * * * * *
33158613 GTAGTTAAACGTGCTTGCGGGATTGTAGTATTATGATAGGTGACCTTCTAGGAAGTCCTCGTGTT
1 GTAGTTAAGCGTGCTTGCGAGATAGTAGTACTAGGATGGGTGACCTTCTGGGAAGTCCTCGTGTT
* *
33158678 AC-CCCTCTCCAATTTTATTTCATATAAAGTTTCTTTTAGTTAAATTTTCTACACGTGGTGTAAC
66 GCACCC-CTCCAATTTTATTTCATATAAAGTTT-TTTTAGTTAAATTTTCTAAACGTGGTGTAAC
* *
33158742 TAAATAGTAATTTGCGTTTTCCGAAATAAATAATTTGAAACGTTATTCT-GTCGAATTTGCATTC
129 TAATTAGTAATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATT-TGGTCGAATTTGCATTC
* * * *
33158806 AAATTTGAGGCGCAAGTGC-AGTAGGGGGCAGCCTTTATATAAATAGATTGTGTGAGAGTTGACG
193 AAATTCGAGGCGCAAGTGCGA-TAAGGGGCAGCCTTTATATAAATAGATTGCGTAAGAGTTGACG
* *
33158870 GGCGTGATCATACCAGCAGTAATGCACAGGATCTCGTCAGAACTCC
257 GGTGTGATCATACCAGCAGTAATGCACAGGATC-CATCAGAACTCC
* * *
33158916 GTAGTTAAGCGTGCTTGCGAGATAGTAGTACTATGATGGGTGACCTTCTAGGAAGTGCTCGTGTT
1 GTAGTTAAGCGTGCTTGCGAGATAGTAGTACTAGGATGGGTGACCTTCTGGGAAGTCCTCGTGTT
* * *
33158981 GCACCTCTCCAATTTTACTTCATATAAAGTTTTTTTAGTTAAATTTTTTAAACGTGGTGTAACTA
66 GCACCCCTCCAATTTTATTTCATATAAAGTTTTTTTAGTTAAATTTTCTAAACGTGGTGTAACTA
* * *
33159046 ATTAGTTATTTGCGTTTTGCGAAATAAATAATTTCAAACGTTATTTGGTCGAATTTGCAATCAAA
131 ATTAGTAATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAA
* *
33159111 TTCGAGGCACAACTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGTAAGAGTTGAC-GGTG
196 TTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGTAAGAGTTGACGGGTG
* * * *
33159175 TGATCATACCAGTAGCAATGCACCGGATCCCATTAGAACTCC
261 TGATCATACCAGCAGTAATGCACAGGAT-CCATCAGAACTCC
* * * * *
33159217 GCAGTTAATCGTGCTTGCGGGATAGTAGTACTAGGATGGGTGACCTTCCTGGGAAATTCTCGTGT
1 GTAGTTAAGCGTGCTTGCGAGATAGTAGTACTAGGATGGGTGACCTT-CTGGGAAGTCCTCGTGT
* * * * *
33159282 TGCAACCCTCCAATTTTGTTTCATATAAAGTTTTTTTTAGTTGAATTTGCTGAACGTGGTGTAAC
65 TGCACCCCTCCAATTTTATTTCATATAAAG-TTTTTTTAGTTAAATTTTCTAAACGTGGTGTAAC
* * * * *
33159347 CAATT-G---GTT--ATTTT-CG-------T--TTTG---TGTTATTTGGTCGAATTTGCATTTA
129 TAATTAGTAATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCA
* * * * * *
33159393 AATTCGAGGCGCATGTGCGGA-AAGGGGTAGTCTTAATATAAATAGATTGCGCAAGAGTTAACGG
194 AATTCGAGGCGCAAGTGC-GATAAGGGGCAGCCTTTATATAAATAGATTGCGTAAGAGTTGACGG
* * * *
33159457 GT-TCGACCATACCAGCACTAATGCACCGGATCCAATCAAAACTCC
258 GTGT-GATCATACCAGCAGTAATGCACAGGATCC-ATCAGAACTCC
** * * * * *
33159502 ACAATTAAGCGTGCTTGGGCA-AGAGTAGTACTGGGATGGGTGACCTCCTGGGAA-TGCCTCGTG
1 GTAGTTAAGCGTGCTTGCG-AGATAGTAGTACTAGGATGGGTGACCTTCTGGGAAGT-CCTCGTG
* * * * * * *
33159565 TTTCACCCCTCCCATTTTAATTCATATAAAATTTTTTTCTA-TTGAATTTTCTACATGTGGTGTA
64 TTGCACCCCTCCAATTTTATTTCATAT-AAAGTTTTTT-TAGTTAAATTTTCTAAACGTGGTGTA
* * * * *
33159629 ACTAATTAGTAATTTGTGTTTTGTGAAATAAATAATTTGAAACGTTATTTTGTTGAATGTGCATT
127 ACTAATTAGTAATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATT
* *
33159694 CAAATTCCAGGCGCAAGTACGATAA-GGGCTAGCCTTTATATAAATAGATTGCG
192 CAAATTCGAGGCGCAAGTGCGATAAGGGGC-AGCCTTTATATAAATAGATTGCG
33159747 CAATAGTAGT
Statistics
Matches: 962, Mismatches: 129, Indels: 84
0.82 0.11 0.07
Matches are distributed among these distances:
283 1 0.00
284 142 0.15
285 81 0.08
287 3 0.00
288 2 0.00
289 1 0.00
290 4 0.00
291 1 0.00
296 2 0.00
297 4 0.00
298 1 0.00
299 2 0.00
300 8 0.01
301 161 0.17
302 301 0.31
303 246 0.26
304 2 0.00
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (301 bp):
GTAGTTAAGCGTGCTTGCGAGATAGTAGTACTAGGATGGGTGACCTTCTGGGAAGTCCTCGTGTT
GCACCCCTCCAATTTTATTTCATATAAAGTTTTTTTAGTTAAATTTTCTAAACGTGGTGTAACTA
ATTAGTAATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAA
TTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGTAAGAGTTGACGGGTG
TGATCATACCAGCAGTAATGCACAGGATCCATCAGAACTCC
Found at i:33159841 original size:227 final size:226
Alignment explanation
Indices: 33159520--33159980 Score: 662
Period size: 227 Copynumber: 2.0 Consensus size: 226
33159510 GCGTGCTTGG
* ** * *
33159520 GCAAGAGTAGTACTGGGATGGGTGACCTCCTGGGAATGCCTCGTGTTTCACCCCTCCCATTTTAA
1 GCAAGAGTAGTACTAGGATGGGAAACCTCCTGGGAATGCCTCGTGTTGCACCCCTCCAATTTTAA
* *
33159585 TTCATATAAAATTTTTTTCTATTGAATTTTCT-ACATGTGGTGTAACTAATTAGTAATTTGT-GT
66 TTCATATAAAATTTTTTTCTATAGAATTTTCTGA-ATGTGGTGTAACTAATTAGTAATTT-TCAT
* * *
33159648 TTTGTGAAATAAATAATTTGAAACGTTATTTTGTTGAATGTGCATTCAAATTCCAGGCGCAAGTA
129 TTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATGTGCATTCAAATTCCAGGCGCAAGTA
*
33159713 CGATAA-GGGCTAGCCTTTATATAAATAGATTGC
194 CGATAAGGGGC-AGCCTTTATATAAATAGATTAC
* *
33159746 GCAATAGTAGTACTAGGATGGGAAACCTTCCTGGGAA-GTCCTCGTGTTGCACCCCTCTAATTTT
1 GCAAGAGTAGTACTAGGATGGGAAACC-TCCTGGGAATG-CCTCGTGTTGCACCCCTCCAATTTT
* * *
33159810 ATTTCATATAAAGTTTTTTT-TACTAGAATTTTCTGAATGTGGTGTAACTAATTAGTTATTTTCA
64 AATTCATATAAAATTTTTTTCTA-TAGAATTTTCTGAATGTGGTGTAACTAATTAGTAATTTTCA
* *
33159874 TTTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGT
128 TTTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATGTGCATTCAAATTCCAGGCGCAAGT
*
33159939 GCGATAAGGGGCAGCCTTTATATAAATAGATTAC
193 ACGATAAGGGGCAGCCTTTATATAAATAGATTAC
33159973 GCAAGAGT
1 GCAAGAGT
33159981 TAACGGGTGC
Statistics
Matches: 209, Mismatches: 20, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
226 27 0.13
227 177 0.85
228 5 0.02
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (226 bp):
GCAAGAGTAGTACTAGGATGGGAAACCTCCTGGGAATGCCTCGTGTTGCACCCCTCCAATTTTAA
TTCATATAAAATTTTTTTCTATAGAATTTTCTGAATGTGGTGTAACTAATTAGTAATTTTCATTT
TGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATGTGCATTCAAATTCCAGGCGCAAGTACG
ATAAGGGGCAGCCTTTATATAAATAGATTAC
Found at i:33160288 original size:280 final size:279
Alignment explanation
Indices: 33159778--33160320 Score: 786
Period size: 280 Copynumber: 1.9 Consensus size: 279
33159768 AAACCTTCCT
*
33159778 GGGAAGTCCTCGTGTTGCACCCCTCTAATTTTATTTCATATAAAGTTTTTTTTACTAGAATTTTC
1 GGGAAGGCCTCGTGTTGCACCCCTCTAATTTTATTTCATATAAAGTTTTTTTTACTAGAATTTTC
* * *
33159843 TGAATGTGGTGTAACTAATTAGTTATTTTCATTTTGCGAAATAAATAATTTGAAACGTTATTTGG
66 TGAACGTGGTGTAACTAATTAGTAATTTGCATTTTGCGAAATAAATAATTTGAAACGTTATTTGG
* *
33159908 TCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTAC
131 TCGAATGTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAAAAGATTAC
* * *
33159973 GCAAGAGTTAACGGGTGCGACCATACCAACACTAATGCACTGGATCCGATCAAAACTCCACAGTT
196 GCAAGAGTTAACGGGTGCAACCATACCAACACTAATGCACCGGATCCCATCAAAACTCCACAGTT
33160038 AAGCGTGCTCGGGAAAGAG
261 AAGCGTGCTCGGGAAAGAG
* ** *
33160057 GGGAAGGCCTCGTGTTGCACCCCT-TCCATTTTATTTCATATAAAGTTTTTTTTTGTTGAATTTT
1 GGGAAGGCCTCGTGTTGCACCCCTCT-AATTTTATTTCATATAAAGTTTTTTTTACTAGAATTTT
* * * *
33160121 CT-ACACGTGTTGTAACTAATTAGTAATTTGCGTTTTTGCGATATAAATAATTTGAAACGTTTTT
65 CTGA-ACGTGGTGTAACTAATTAGTAATTTGC-ATTTTGCGAAATAAATAATTTGAAACGTTATT
* * * *
33160185 TTGTTGAATGTGCATTCAAATTCGAGGCGCAAGTGCGATAA-TGGCAAGCCTTTCTATAAAAAGA
128 TGGTCGAATGTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGC-AGCCTTTATATAAAAAGA
* * * * * *
33160249 TTACGCAAGAGTTGAGGGGTGCAATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGC
192 TTACGCAAGAGTTAACGGGTGCAACCATACCAACACTAATGCACCGGATCCCATCAAAACTCCAC
33160314 AGTTAAG
257 AGTTAAG
33160321 TGTACTTGGG
Statistics
Matches: 233, Mismatches: 27, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
278 2 0.01
279 85 0.36
280 146 0.63
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.33
Consensus pattern (279 bp):
GGGAAGGCCTCGTGTTGCACCCCTCTAATTTTATTTCATATAAAGTTTTTTTTACTAGAATTTTC
TGAACGTGGTGTAACTAATTAGTAATTTGCATTTTGCGAAATAAATAATTTGAAACGTTATTTGG
TCGAATGTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAAAAGATTAC
GCAAGAGTTAACGGGTGCAACCATACCAACACTAATGCACCGGATCCCATCAAAACTCCACAGTT
AAGCGTGCTCGGGAAAGAG
Found at i:33160683 original size:194 final size:195
Alignment explanation
Indices: 33160325--33160690 Score: 479
Period size: 194 Copynumber: 1.9 Consensus size: 195
33160315 GTTAAGTGTA
* * * * * *
33160325 CTTGGGCGAGATTTGTACTAGTTTGGGTGATCTCCAGGGAAGTCCTCGTGTTGCACCCCTCCCGT
1 CTTGGGCGAGAGTAGTACTAGATTGGGTGACCTCCAGGAAAGTCCTCGTGTTGCACCCCTCCCAT
* * * * *
33160390 TTAATTTCATATAAAGTTGTTTTTCGTTGCATTTCCTACACGTGGTGTAACTAATAACTTATTTT
66 TTAACTTAATATAAAGTTGTTTTTCGTAGAATTTCCTAAACGTGGTGTAACTAATAACTTATTTT
*
33160455 CATTTTGTGAAATAAATAAGCTAAAACATTATTTGGCCGAATTTACGCGAGAGTAGCTAAGCGTG
131 CATTTTGCGAAATAAATAAGCTAAAACATTATTTGGCCGAATTTACGCGAGAGTAGCTAAGCGTG
33160520 CTTGGGCGAGAGTAGTACTAGGATT-GGTGACCT-CATGGAAAGTCCTCGTGTTGCACCCCTCCC
1 CTTGGGCGAGAGTAGTACTA-GATTGGGTGACCTCCA-GGAAAGTCCTCGTGTTGCACCCCTCCC
* * * * *
33160583 ATTTTACTTAATATAATGTT-TTTTTAC-TAGAATTTTCTAAACGTGGTGTAACTAATTAGTTAT
64 ATTTAACTTAATATAAAGTTGTTTTT-CGTAGAATTTCCTAAACGTGGTGTAACTAATAACTTAT
** * * *
33160646 TTTCATTTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAAT
128 TTTCATTTTGCGAAATAAATAAGCTAAAACATTATTTGGCCGAAT
33160691 GTGCATTCAG
Statistics
Matches: 146, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
194 76 0.52
195 67 0.46
196 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (195 bp):
CTTGGGCGAGAGTAGTACTAGATTGGGTGACCTCCAGGAAAGTCCTCGTGTTGCACCCCTCCCAT
TTAACTTAATATAAAGTTGTTTTTCGTAGAATTTCCTAAACGTGGTGTAACTAATAACTTATTTT
CATTTTGCGAAATAAATAAGCTAAAACATTATTTGGCCGAATTTACGCGAGAGTAGCTAAGCGTG
Found at i:33161021 original size:72 final size:72
Alignment explanation
Indices: 33160904--33161047 Score: 261
Period size: 72 Copynumber: 2.0 Consensus size: 72
33160894 CATATAAAGT
*
33160904 TTTTTTAGTTAAATTTTCTTCACGTGGTGTAACTAAATAGTAATTTACGTTTTGCAAAATAAATA
1 TTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAAATAGTAATTTACGTTTTGCAAAATAAATA
33160969 ATTTGAA
66 ATTTGAA
* *
33160976 TTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAAATAGTAATTTGCGTTTTGCGAAATAAATA
1 TTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAAATAGTAATTTACGTTTTGCAAAATAAATA
33161041 ATTTGAA
66 ATTTGAA
33161048 ATGTTATTTT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.34, C:0.08, G:0.14, T:0.44
Consensus pattern (72 bp):
TTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAAATAGTAATTTACGTTTTGCAAAATAAATA
ATTTGAA
Found at i:33161291 original size:374 final size:374
Alignment explanation
Indices: 33160613--33161346 Score: 1085
Period size: 374 Copynumber: 2.0 Consensus size: 374
33160603 TTTTTACTAG
* * *
33160613 AATTTTCTAAACGTGGTGTAACTAATTAGTTATTTTCATTTTGCGAAATAAATAATTTGAAACGT
1 AATTTTCTAAACGTGGTGTAACTAAATAGTAATTTGCATTTTGCGAAATAAATAATTTGAAACGT
* *
33160678 TATTTGGTCGAATGTGCATTCAGATTCGAGGCACAAGTGCGATAGGAGGTAGCCTTTATATAAAT
66 TATTTGGTCGAATGTGCATTCAAATTCGAGGCACAAGTGCGATAGGAGGCAGCCTTTATATAAAT
* ** *
33160743 AGATTGCGTAAGAGTTGACGGGTGTGGTCATACCAGTAGTAAAGCATAGGATCCCATCAAAACTC
131 AGATTGCGTAAGAGTTGACGGGTGTGATCATACCAACAGTAAAGCACAGGATCCCATCAAAACTC
* * * *
33160808 CGTAGTTAAGCGTGCTTGCGGGATTGTACTATTATGATAGGTGACCCTCTGGGAAGTCCTCGTGT
196 CGTAGTTAAGCGTGCTTGCGAGATAGTACTACTATGATAGGTGACCCTCTAGGAAGTCCTCGTGT
* * **
33160873 TACCCCTTTCCAATTTTATTTCATATAAAGTTTTTTTAGTTAAATTTTCTTCACGTGGTGTAACT
261 TACACCTCTCCAATTTTATTTCATATAAAGTTTTTTTAGTTAAATTTTCTAAACGTGGTGTAACT
33160938 AA-ATAGTAATTTACGTTTTGCAAAATAAATAATTTGAATTTTTTAGTTA
326 AATA-AGTAATTTACGTTTTGCAAAATAAATAATTTGAATTTTTTAGTTA
* * *
33160987 AATTTTCTACACGTGGTGTAACTAAATAGTAATTTGCGTTTTGCGAAATAAATAATTTGAAATGT
1 AATTTTCTAAACGTGGTGTAACTAAATAGTAATTTGCATTTTGCGAAATAAATAATTTGAAACGT
* * * * *
33161052 TATTTTGTCGAATTTGCATTCAAAGTT-GAGGCGCAAGTGGGATAGGGGGCAGCCTTTATATAAA
66 TATTTGGTCGAATGTGCATTCAAA-TTCGAGGCACAAGTGCGATAGGAGGCAGCCTTTATATAAA
* * * **
33161116 TAGATTGTGTGAGAGTTGACGGGTGTGATCATACCAACAGTAATGCACAGGATCCCATCAGCACT
130 TAGATTGCGTAAGAGTTGACGGGTGTGATCATACCAACAGTAAAGCACAGGATCCCATCAAAACT
* * * *
33161181 CCGTAGTTAAGCGTGCTTGCGAGATAGTAGTACTATTATGGGTGACCTTCTAGGAAGTCCTCGTG
195 CCGTAGTTAAGCGTGCTTGCGAGATAGTACTACTATGATAGGTGACCCTCTAGGAAGTCCTCGTG
* * *
33161246 TTGCACCTCTCCACTTTTATTTCATATAAAGTTTTTTTAGTTAAATTTTCTAAATGTGGTGTAAC
260 TTACACCTCTCCAATTTTATTTCATATAAAGTTTTTTTAGTTAAATTTTCTAAACGTGGTGTAAC
* *
33161311 TAATAAGTTATTTACGTTTTGCGAAATAAATAATTT
325 TAATAAGTAATTTACGTTTTGCAAAATAAATAATTT
33161347 CAAACGTTAT
Statistics
Matches: 319, Mismatches: 39, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
374 316 0.99
375 3 0.01
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.36
Consensus pattern (374 bp):
AATTTTCTAAACGTGGTGTAACTAAATAGTAATTTGCATTTTGCGAAATAAATAATTTGAAACGT
TATTTGGTCGAATGTGCATTCAAATTCGAGGCACAAGTGCGATAGGAGGCAGCCTTTATATAAAT
AGATTGCGTAAGAGTTGACGGGTGTGATCATACCAACAGTAAAGCACAGGATCCCATCAAAACTC
CGTAGTTAAGCGTGCTTGCGAGATAGTACTACTATGATAGGTGACCCTCTAGGAAGTCCTCGTGT
TACACCTCTCCAATTTTATTTCATATAAAGTTTTTTTAGTTAAATTTTCTAAACGTGGTGTAACT
AATAAGTAATTTACGTTTTGCAAAATAAATAATTTGAATTTTTTAGTTA
Found at i:33161527 original size:302 final size:301
Alignment explanation
Indices: 33160976--33161671 Score: 866
Period size: 302 Copynumber: 2.3 Consensus size: 301
33160966 ATAATTTGAA
* *
33160976 TTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAA-ATAGTAATTTGCGTTTTGCGAAATAAAT
1 TTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAATA-AGTTATTTACGTTTTGCGAAATAAAT
* * * * * * *
33161040 AATTTGAAATGTTATTTTGTCGAATTTGCATTCAAAGTTGAGGCGCAAGTGGGATAGGGGGCAGC
65 AATTTAAAACGTTATTTGGTCGAATTTACATTCAAAGTTGAGGCACAAGTGCGATAAGGGGCAGC
* ** ***
33161105 CTTTATATAAATAGATTGTGTGAGAGTTGACGGGTGTGATCATACCAACAGTAATGCACAGGATC
130 CTTTATATAAATAGATTGCGCAAGAGTTGACGGGTACCATCATACCAACAGTAATGCACAGGATC
* * * * * * * **
33161170 CCATCAGCACTCCGTAGTTAAGCGTGCTTGCGAGATAGTAGTACTATTATGGGTGACCTTCTAGG
195 CCATCAGAACTCCGCAGCTAAGCATGCTTGCGAGATA-TAGTACTAGTATGGGTGACCTCCAACA
* *
33161235 AAGT-CCTCGTGTTGCACCTCTCCACTTTTATTTCATATAAAGT
259 AAGTAAC-CGTGTTGCACCCCTCCACTTTTATTTCATATAAAGT
* *
33161278 TTTTTTAGTTAAATTTTCTAAATGTGGTGTAACTAATAAGTTATTTACGTTTTGCGAAATAAATA
1 TTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAATAAGTTATTTACGTTTTGCGAAATAAATA
*
33161343 ATTTCAAACGTTATTTGGTCGAATTTACATTCAAA-TTCGAGGCACAAGTGCGATAAGGGGC-GA
66 ATTTAAAACGTTATTTGGTCGAATTTACATTCAAAGTT-GAGGCACAAGTGCGATAAGGGGCAG-
* *
33161406 CCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTACCATCATACCAAC-GCTAGTGCACCGGA
129 CCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTACCATCATACCAACAG-TAATGCACAGGA
33161470 TCCCATCAGAACTCCGCAGCTAAGCATGCTTGGGCGAGAT-TAGTACTAGGT-TGGGTGACCTCC
193 TCCCATCAGAACTCCGCAGCTAAGCATGCTT--GCGAGATATAGTACTA-GTATGGGTGACCTCC
* ***
33161533 AACAAAGTAACCGTGTTGCGCCCCTCTGGTTTTATTTCATATAAAGT
255 AACAAAGTAACCGTGTTGCACCCCTCCACTTTTATTTCATATAAAGT
* ** * * * *
33161580 TGTTTTTTGTTGCATTTTCTACACGTGGTGTAACTAATTACTTATTTTCATTTTGCGAAATAAAT
1 T-TTTTTAGTTAAATTTTCTACACGTGGTGTAACTAATAAGTTATTTACGTTTTGCGAAATAAAT
*
33161645 AATTTAAAACGTTATTTGGCCGAATTT
65 AATTTAAAACGTTATTTGGTCGAATTT
33161672 GCGCGAGAGT
Statistics
Matches: 340, Mismatches: 45, Indels: 17
0.85 0.11 0.04
Matches are distributed among these distances:
301 4 0.01
302 247 0.73
303 82 0.24
304 7 0.02
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.34
Consensus pattern (301 bp):
TTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAATAAGTTATTTACGTTTTGCGAAATAAATA
ATTTAAAACGTTATTTGGTCGAATTTACATTCAAAGTTGAGGCACAAGTGCGATAAGGGGCAGCC
TTTATATAAATAGATTGCGCAAGAGTTGACGGGTACCATCATACCAACAGTAATGCACAGGATCC
CATCAGAACTCCGCAGCTAAGCATGCTTGCGAGATATAGTACTAGTATGGGTGACCTCCAACAAA
GTAACCGTGTTGCACCCCTCCACTTTTATTTCATATAAAGT
Found at i:33162455 original size:186 final size:186
Alignment explanation
Indices: 33162141--33163257 Score: 2225
Period size: 186 Copynumber: 6.0 Consensus size: 186
33162131 TTCGTTATTT
33162141 GGTCGAATTTGCATTCAACTTCGAGGCGCAAGTGCGAAAAGGGGTAGCCTTAATATAAATAGATT
1 GGTCGAATTTGCATTCAACTTCGAGGCGCAAGTGCGAAAAGGGGTAGCCTTAATATAAATAGATT
33162206 GCGCAAGAGTTAACAGGTGTGACCATACCAGCACTAATGCGTCGGATCCCGTCAAAACTCCACAG
66 GCGCAAGAGTTAACAGGTGTGACCATACCAGCACTAATGCGTCGGATCCCGTCAAAACTCCACAG
33162271 TTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTC
131 TTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTC
33162327 GGTCGAATTTGCATTCAACTTCGAGGCGCAAGTGCGAAAAGGGGTAGCCTTAATATAAATAGATT
1 GGTCGAATTTGCATTCAACTTCGAGGCGCAAGTGCGAAAAGGGGTAGCCTTAATATAAATAGATT
33162392 GCGCAAGAGTTAACAGGTGTGACCATACCAGCACTAATGCGTCGGATCCCGTCAAAACTCCACAG
66 GCGCAAGAGTTAACAGGTGTGACCATACCAGCACTAATGCGTCGGATCCCGTCAAAACTCCACAG
33162457 TTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTC
131 TTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTC
33162513 GGTCGAATTTGCATTCAACTTCGAGGCGCAAGTGCGAAAAGGGGTAGCCTTAATATAAATAGATT
1 GGTCGAATTTGCATTCAACTTCGAGGCGCAAGTGCGAAAAGGGGTAGCCTTAATATAAATAGATT
33162578 GCGCAAGAGTTAACAGGTGTGACCATACCAGCACTAATGCGTCGGATCCCGTCAAAACTCCACAG
66 GCGCAAGAGTTAACAGGTGTGACCATACCAGCACTAATGCGTCGGATCCCGTCAAAACTCCACAG
33162643 TTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTC
131 TTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTC
33162699 GGTCGAATTTGCATTCAACTTCGAGGCGCAAGTGCGAAAAGGGGTAGCCTTAATATAAATAGATT
1 GGTCGAATTTGCATTCAACTTCGAGGCGCAAGTGCGAAAAGGGGTAGCCTTAATATAAATAGATT
33162764 GCGCAAGAGTTAACAGGTGTGACCATACCAGCACTAATGCGTCGGATCCCGTCAAAACTCCACAG
66 GCGCAAGAGTTAACAGGTGTGACCATACCAGCACTAATGCGTCGGATCCCGTCAAAACTCCACAG
33162829 TTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTC
131 TTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTC
33162885 GGTCGAATTTGCATTCAACTTCGAGGCGCAAGTGCGAAAAGGGGTAGCCTTAATATAAATAGATT
1 GGTCGAATTTGCATTCAACTTCGAGGCGCAAGTGCGAAAAGGGGTAGCCTTAATATAAATAGATT
33162950 GCGCAAGAGTTAACAGGTGTGACCATACCAGCACTAATGCGTCGGATCCCGTCAAAACTCCACAG
66 GCGCAAGAGTTAACAGGTGTGACCATACCAGCACTAATGCGTCGGATCCCGTCAAAACTCCACAG
33163015 TTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTC
131 TTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTC
33163071 GGTCGAATTTGCATTCAACTTCGAGGCGCAAGTGCGAAAAGGGGTAGCCTTAATATAAATAGATT
1 GGTCGAATTTGCATTCAACTTCGAGGCGCAAGTGCGAAAAGGGGTAGCCTTAATATAAATAGATT
33163136 GCGCAAGAGTTAACAGGTGTGACCATACCAGCACTAATGCGTCGGATCCCGTCAAAACTCCACAG
66 GCGCAAGAGTTAACAGGTGTGACCATACCAGCACTAATGCGTCGGATCCCGTCAAAACTCCACAG
*
33163201 TTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAATGCCTC
131 TTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTC
33163257 G
1 G
33163258 TGTTTCACCC
Statistics
Matches: 930, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
186 930 1.00
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.22
Consensus pattern (186 bp):
GGTCGAATTTGCATTCAACTTCGAGGCGCAAGTGCGAAAAGGGGTAGCCTTAATATAAATAGATT
GCGCAAGAGTTAACAGGTGTGACCATACCAGCACTAATGCGTCGGATCCCGTCAAAACTCCACAG
TTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTC
Found at i:33163519 original size:227 final size:225
Alignment explanation
Indices: 33163215--33163675 Score: 710
Period size: 227 Copynumber: 2.0 Consensus size: 225
33163205 GCGTGCTTGG
* *
33163215 GCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAATGCCTCGTGTTTCACCCCTCCCATTTTAA
1 GCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAATGCCTCGTGTTGCACCCCTCCAATTTTAA
** * *
33163280 TTCATATAAAGTTTCTTTCTA-TTGAATTTTCTACACGTGGTGTAACTAATTAG-TAATTTGCGT
66 TTCATATAAAGTTT-TTTCTACTAAAATTTTCTAAACGTGGTGTAACTAATT-GCTAATTT-CAT
*
33163343 TTTGCGAAATAAATAATTTGAAACGTTATTTTGTCGAATGTGCATTCAAATTCCAGGCGCAAGTA
128 TTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATGTGCATTCAAATTCCAGGCGCAAGTA
*
33163408 CGATAAGGGCCAGCCTTTATATAAATAGATTGC
193 CGATAAGGGCAAGCCTTTATATAAATAGATTGC
* *
33163441 GTAAGAGTAGTACTAGGATGGGTGACCTTCCTGGGAATTCCTCGTGTTGCACCCCTCCAATTTTA
1 GCAAGAGTAGTACTAGGATGGGTGACC-TCCTGGGAATGCCTCGTGTTGCACCCCTCCAATTTTA
* *
33163506 TTTCATATAAAGTTTTTTTTACTAAAATTTTCTAAACGTGGTGTAACTAATTGCTTAATTTCATT
65 ATTCATATAAAGTTTTTTCTACTAAAATTTTCTAAACGTGGTGTAACTAATTGC-TAATTTCATT
* * *
33163571 TTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGC
129 TTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATGTGCATTCAAATTCCAGGCGCAAGTAC
* *
33163636 GATAAGGGGAAGCCTTTATATAAATAGATTTC
194 GATAAGGGCAAGCCTTTATATAAATAGATTGC
33163668 GCAAGAGT
1 GCAAGAGT
33163676 TAACGGGTGC
Statistics
Matches: 213, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
226 32 0.15
227 175 0.82
228 6 0.03
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (225 bp):
GCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAATGCCTCGTGTTGCACCCCTCCAATTTTAA
TTCATATAAAGTTTTTTCTACTAAAATTTTCTAAACGTGGTGTAACTAATTGCTAATTTCATTTT
GCGAAATAAATAATTTGAAACGTTATTTGGTCGAATGTGCATTCAAATTCCAGGCGCAAGTACGA
TAAGGGCAAGCCTTTATATAAATAGATTGC
Found at i:33163940 original size:72 final size:72
Alignment explanation
Indices: 33163823--33163963 Score: 246
Period size: 72 Copynumber: 2.0 Consensus size: 72
33163813 ATATAAAGTT
* * *
33163823 TTTTTTAGTTAAATTTTCTTCACGTGGTGTAACTAAATAGTAATTTGCGTTTTGCAAAATAAATA
1 TTTTTTAATTAAATTTTCTACACGTGGTGTAACTAAATAGTAATTTGCGTTTTCCAAAATAAATA
33163888 ATTTGAA
66 ATTTGAA
*
33163895 TTTTTTAATTAAATTTTCTACACGTGGTGTAACTAAATAGTAATTTGCGTTTTCCGAAATAAATA
1 TTTTTTAATTAAATTTTCTACACGTGGTGTAACTAAATAGTAATTTGCGTTTTCCAAAATAAATA
33163960 ATTT
66 ATTT
33163964 TAAATGTTAT
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 65 1.00
ACGTcount: A:0.33, C:0.09, G:0.13, T:0.45
Consensus pattern (72 bp):
TTTTTTAATTAAATTTTCTACACGTGGTGTAACTAAATAGTAATTTGCGTTTTCCAAAATAAATA
ATTTGAA
Found at i:33164448 original size:302 final size:301
Alignment explanation
Indices: 33163895--33164590 Score: 846
Period size: 302 Copynumber: 2.3 Consensus size: 301
33163885 ATAATTTGAA
* * * *
33163895 TTTTTTAATTAAATTTTCTACACGTGGTGTAACTAA-ATAGTAATTTGCGTTTTCCGAAATAAAT
1 TTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAATA-AGTTATTTACGTTTTGCGAAATAAAT
* * * * * * * *
33163959 AATTTTAAATGTTATTTTGTCGAATTTGCATTCAAATTTGAGGCGCAAGTGGGATAGGGGGCAGC
65 AATTTAAAACGTTATTTGGTCGAATTTACATTCAAATTCGAGGCACAAGTGCGATAAGGGGCAGC
* ** ***
33164024 CTTTATATAAATAGATTGTGTGAGAGTTGACGGGTGTGATCATACCAACAGTAATGCACAGGACC
130 CTTTATATAAATAGATTGCGCAAGAGTTGACGGGTACCATCATACCAACAGTAATGCACAGGACC
* * * * * * * **
33164089 CCATCAGAACTCCGTAGTTAAGCGTGCTTGCGAGATAGTAGTACTATTATTGGTGACCTTCTAGG
195 CCATCAGAACTCCGCAGCTAAGCATGCTTGCGAGATA-TAGTACTAGTATGGGTGACCTCCAACA
* *
33164154 AAGT-CCTCGTGTTGCACCTCTCCACTTTTATTTCATATAAAGT
259 AAGTAAC-CGTGTTGCACCCCTCCACTTTTATTTCATATAAAGT
* *
33164197 TTTTTTAGTTAAATTTTCTAAATGTGGTGTAACTAATAAGTTATTTACGTTTTGCGAAATAAATA
1 TTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAATAAGTTATTTACGTTTTGCGAAATAAATA
*
33164262 ATTTCAAACGTTATTTGGTCGAATTTACATTCAAATTCGAGGCACAAGTGCGATAAGGGGC-GAC
66 ATTTAAAACGTTATTTGGTCGAATTTACATTCAAATTCGAGGCACAAGTGCGATAAGGGGCAG-C
* * *
33164326 CTTTATATAAATAGATTGCGCAAGAGTTGACGGGTACCATCATACCAAC-GCTAGTGCACCGGAT
130 CTTTATATAAATAGATTGCGCAAGAGTTGACGGGTACCATCATACCAACAG-TAATGCACAGGAC
33164390 CCCATCAGAACTCCGCAGCTAAGCATGCTTGGGCGAGAT-TAGTACTAGGT-TGGGTGACCTCCA
194 CCCATCAGAACTCCGCAGCTAAGCATGCTT--GCGAGATATAGTACTA-GTATGGGTGACCTCCA
* ***
33164453 ACAAAGTAACCGTGTTGCGCCCCTCTGGTTTTATTTCATATAAAGT
256 ACAAAGTAACCGTGTTGCACCCCTCCACTTTTATTTCATATAAAGT
* ** * * * *
33164499 TGTTTTTCGTTGCATTTTCTACACGTGGTGTAACTAATTACTTATTTTCATTTTGCGAAATAAAT
1 T-TTTTTAGTTAAATTTTCTACACGTGGTGTAACTAATAAGTTATTTACGTTTTGCGAAATAAAT
*
33164564 AATTTAAAACGTTATTTGGCCGAATTT
65 AATTTAAAACGTTATTTGGTCGAATTT
33164591 GCGCGAGAGT
Statistics
Matches: 337, Mismatches: 49, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
301 2 0.01
302 246 0.73
303 82 0.24
304 7 0.02
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.35
Consensus pattern (301 bp):
TTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAATAAGTTATTTACGTTTTGCGAAATAAATA
ATTTAAAACGTTATTTGGTCGAATTTACATTCAAATTCGAGGCACAAGTGCGATAAGGGGCAGCC
TTTATATAAATAGATTGCGCAAGAGTTGACGGGTACCATCATACCAACAGTAATGCACAGGACCC
CATCAGAACTCCGCAGCTAAGCATGCTTGCGAGATATAGTACTAGTATGGGTGACCTCCAACAAA
GTAACCGTGTTGCACCCCTCCACTTTTATTTCATATAAAGT
Found at i:33165293 original size:284 final size:281
Alignment explanation
Indices: 33164767--33165333 Score: 734
Period size: 284 Copynumber: 2.0 Consensus size: 281
33164757 TAACTTGAAA
*
33164767 CGTTATTTGGTCGATTTCATTCAAATTCGAGGCACAACTGCGATAAGGGGATGCCTTATATAAAT
1 CGTTATTTGGTCGATTTCATTCAAATTCGAGGCACAACTGCGAAAAGGGGATGCCTTATATAAAT
* * * * * * * * *
33164832 AGATTGCGTAAGAGTTGACGGGTGTGATCGTACCAGTAGCAATGCACCGGATTCCATTAGAACTC
66 AGATTGCGCAAGAGTTAACAGGTGTGACCATACCAGCAGCAATGCACCGGATCCCATCAAAACTC
* * * *
33164897 CGCAGTTAATCGTGCTTGCGGGATAGTAGTACTAGGATGGGTGACCTTCCTGGGAAATCCTCGTG
131 CACAGTTAAGCGTGCTTGCGGAAGAGTAGTACTAGGATGGGTGACCTTCCTGGGAAATCCTCGTG
*
33164962 TTGCAACCCTCCAATTTTATTTCATATAAAGTTTTTTTAGTTGAATTTGCTGA-ACGTGGTGTAA
196 TTGCAACCCTCCAATTTTAATTCATATAAAGTTTTTTTAGTTGAATTTGCT-ACACGTGGTGTAA
* *
33165026 CTAATTAGTTATTTTCGTTTTG
260 CTAATTAGTAATTTGCGTTTTG
* * * * *
33165048 CGTTATTTGGTCGAATTTGCATTCAACTTCGAGTCGCAAGTGTGAAAAGGGG-TAGCCTTAATAT
1 CGTTATTTGGTCG-ATTT-CATTCAAATTCGAGGCACAACTGCGAAAAGGGGAT-GCCTT-ATAT
** *
33165112 AAATAGATTGCGCAAGAGTTAACAGGTGTGACCATACCAGCA-CTAATGCGTCGGATCCCGTCAA
62 AAATAGATTGCGCAAGAGTTAACAGGTGTGACCATACCAGCAGC-AATGCACCGGATCCCATCAA
33165176 AACTCCACAGTTAAGCGTGCTTG-GGCAAGAGTAGTACTAGGATGGGTGACC-TCCTGGG-AATG
126 AACTCCACAGTTAAGCGTGCTTGCGG-AAGAGTAGTACTAGGATGGGTGACCTTCCTGGGAAAT-
* * * *
33165238 CCTCGTGTTTCACCCCTCCCATTTTAATTCATATAAAGTTTTTTTCTA-TTGAATTTTCTACACG
189 CCTCGTGTTGCAACCCTCCAATTTTAATTCATATAAAG-TTTTTT-TAGTTGAATTTGCTACACG
33165302 TGGTGTAACTAATTAGTAATTTGCGTTTTG
252 TGGTGTAACTAATTAGTAATTTGCGTTTTG
33165332 CG
1 CG
33165334 AAATAAATAA
Statistics
Matches: 247, Mismatches: 29, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
281 13 0.05
282 8 0.03
283 77 0.31
284 147 0.60
285 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (281 bp):
CGTTATTTGGTCGATTTCATTCAAATTCGAGGCACAACTGCGAAAAGGGGATGCCTTATATAAAT
AGATTGCGCAAGAGTTAACAGGTGTGACCATACCAGCAGCAATGCACCGGATCCCATCAAAACTC
CACAGTTAAGCGTGCTTGCGGAAGAGTAGTACTAGGATGGGTGACCTTCCTGGGAAATCCTCGTG
TTGCAACCCTCCAATTTTAATTCATATAAAGTTTTTTTAGTTGAATTTGCTACACGTGGTGTAAC
TAATTAGTAATTTGCGTTTTG
Found at i:33165504 original size:227 final size:225
Alignment explanation
Indices: 33165200--33165660 Score: 694
Period size: 227 Copynumber: 2.0 Consensus size: 225
33165190 GCGTGCTTGG
* * *
33165200 GCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAATGCCTCGTGTTTCACCCCTCCCATTTTAA
1 GCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAATGCCTCGTGTTGCACCCCTCCAAGTTTAA
** * *
33165265 TTCATATAAAGTTTTTTTCTA-TTGAATTTTCTACACGTGGTGTAACTAATTAG-TAATTTGCGT
66 TTCATATAAAGTTTTTTT-TACTAAAATTTTCTAAACGTGGTGTAACTAATT-GCTAATTT-CAT
*
33165328 TTTGCGAAATAAATAATTTGAAACGTTATTTTCTCGAATGTGCATTCAAATTCCAGGCGCAAGTA
128 TTTGCGAAATAAATAATTTGAAACGTTATTTGCTCGAATGTGCATTCAAATTCCAGGCGCAAGTA
33165393 CGATAAGGGCCAA-CCTTTATATAAATAGATTGC
193 CGATAAGGG-CAAGCCTTTATATAAATAGATTGC
* *
33165426 GTAAGAGTAGTACTAGGATGGGTGACCCTCCTGGGAATTCCTCGTGTTGCACCCCTCCAAGTTTA
1 GCAAGAGTAGTACTAGGATGGGTGA-CCTCCTGGGAATGCCTCGTGTTGCACCCCTCCAAGTTTA
*
33165491 TTTCATATAAAGTTTTTTTTACTAAAATTTTCTAAACGTGGTGTAACTAATTGCTTAATTTCATT
65 ATTCATATAAAGTTTTTTTTACTAAAATTTTCTAAACGTGGTGTAACTAATTGC-TAATTTCATT
* * * *
33165556 TTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGC
129 TTGCGAAATAAATAATTTGAAACGTTATTTGCTCGAATGTGCATTCAAATTCCAGGCGCAAGTAC
* *
33165621 GATAAGGGGAAGCCTTTATATAAATAGATTTC
194 GATAAGGGCAAGCCTTTATATAAATAGATTGC
33165653 GCAAGAGT
1 GCAAGAGT
33165661 TAACGGGTGC
Statistics
Matches: 212, Mismatches: 18, Indels: 9
0.89 0.08 0.04
Matches are distributed among these distances:
226 29 0.14
227 177 0.83
228 6 0.03
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35
Consensus pattern (225 bp):
GCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAATGCCTCGTGTTGCACCCCTCCAAGTTTAA
TTCATATAAAGTTTTTTTTACTAAAATTTTCTAAACGTGGTGTAACTAATTGCTAATTTCATTTT
GCGAAATAAATAATTTGAAACGTTATTTGCTCGAATGTGCATTCAAATTCCAGGCGCAAGTACGA
TAAGGGCAAGCCTTTATATAAATAGATTGC
Found at i:33165925 original size:72 final size:72
Alignment explanation
Indices: 33165808--33165951 Score: 279
Period size: 72 Copynumber: 2.0 Consensus size: 72
33165798 ATATAAAGTT
*
33165808 TTTTTTAGTTAAATTTTCTTCACGTGGTGTAACTAAATAGTAATTTGCGTTTTGCGAAATAAATA
1 TTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAAATAGTAATTTGCGTTTTGCGAAATAAATA
33165873 ATTTGAA
66 ATTTGAA
33165880 TTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAAATAGTAATTTGCGTTTTGCGAAATAAATA
1 TTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAAATAGTAATTTGCGTTTTGCGAAATAAATA
33165945 ATTTGAA
66 ATTTGAA
33165952 ATGTTATTTT
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.33, C:0.08, G:0.15, T:0.44
Consensus pattern (72 bp):
TTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAAATAGTAATTTGCGTTTTGCGAAATAAATA
ATTTGAA
Found at i:33166430 original size:301 final size:301
Alignment explanation
Indices: 33165880--33166575 Score: 837
Period size: 301 Copynumber: 2.3 Consensus size: 301
33165870 ATAATTTGAA
* *
33165880 TTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAAATAGTAATTTGCGTTTTGCGAAATAAATA
1 TTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAATTAGTTATTTGCGTTTTGCGAAATAAATA
* * * * * * * **
33165945 ATTTGAAATGTTATTTTGTCGAATTTGCATTCATATTTGAGGCACAAGTGCGATAGGGGGCAGGC
66 ATTTAAAACGTTATTTGGTCAAATTTGCATTCAAATTCGAGGCACAAGTGCGATAAGGGGCAACC
* * ** *** * *
33166010 TTTGTATAAATAGATTGTGTGAGAGTTGACGGGTGTGATCGTACCAGCAGTAATGCACAGGATCC
131 TTTATATAAATAGATTGCGCAAGAGTTGACGGGTACCATCATACCAACAGTAATGCACAGGATCC
** * * *
33166075 CATCAGAACTCCTTAGTTAAGCGTGCTTGCGAGATAGTAGTACTATGATGGGTGACCTTCTAGG-
196 CATCAGAACTCCGCAGCTAAGCGTGCTTGCGAGATA-TAGTACTAGGATGGGTGACC-TCCAGGA
* *
33166139 AAGT-CCTCGTGTTGCACCTCTCTAATTTTATTTCATATAAAG-
259 AAGTAAC-CGTGTTGCACCCCTCTAATTTTATTTCATATAAAGC
* *
33166181 TTTTTTAGTTAAATTTTCTAAACGTGGTGTAACTAATTAGTTATTTGCGTTTTGCAAAATAAATA
1 TTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAATTAGTTATTTGCGTTTTGCGAAATAAATA
* * *
33166246 ATTTCAAACGTTATTTGGTCAAATTTTCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAACC
66 ATTTAAAACGTTATTTGGTCAAATTTGCATTCAAATTCGAGGCACAAGTGCGATAAGGGGCAACC
* * *
33166311 TTTATATAAATAGATTGCGCAAGAGTTGAGGGGTACCATCATACCAAC-GCTAGTGCACCGGATC
131 TTTATATAAATAGATTGCGCAAGAGTTGACGGGTACCATCATACCAACAG-TAATGCACAGGATC
*
33166375 CCATCAGAACTCCGCAGCTAAG-GATGCTTGGGCGAGAT-TAGTACTAGGTTGGGTGACCTCCAG
195 CCATCAGAACTCCGCAGCTAAGCG-TGCTT--GCGAGATATAGTACTAGGATGGGTGACCTCCAG
* **
33166438 GAAAGTAACCGTGTTGCGCCCCTCTCGTTTTATTTCATATAAAGC
257 GAAAGTAACCGTGTTGCACCCCTCTAATTTTATTTCATATAAAGC
* * ** * * * *
33166483 TGCTTTTCGTTGCATTATCTACACGTGGTGTAACTAATTACTTATTTTCATTTTGCGAAATAAAT
1 T-TTTTTAGTTAAATTTTCTACACGTGGTGTAACTAATTAGTTATTTGCGTTTTGCGAAATAAAT
* *
33166548 AATTTAAAACGTTATTTGGCCGAATTTG
65 AATTTAAAACGTTATTTGGTCAAATTTG
33166576 TGTGAGAGTA
Statistics
Matches: 335, Mismatches: 52, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
300 7 0.02
301 242 0.72
302 2 0.01
303 84 0.25
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.34
Consensus pattern (301 bp):
TTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAATTAGTTATTTGCGTTTTGCGAAATAAATA
ATTTAAAACGTTATTTGGTCAAATTTGCATTCAAATTCGAGGCACAAGTGCGATAAGGGGCAACC
TTTATATAAATAGATTGCGCAAGAGTTGACGGGTACCATCATACCAACAGTAATGCACAGGATCC
CATCAGAACTCCGCAGCTAAGCGTGCTTGCGAGATATAGTACTAGGATGGGTGACCTCCAGGAAA
GTAACCGTGTTGCACCCCTCTAATTTTATTTCATATAAAGC
Found at i:33166734 original size:195 final size:195
Alignment explanation
Indices: 33166399--33166770 Score: 475
Period size: 195 Copynumber: 1.9 Consensus size: 195
33166389 CAGCTAAGGA
* * * * *
33166399 TGCTTGGGCGAGATTAGTACTAGGTTGGGTGACCTCCAGGAAAGTAACCGTGTTGCGCCCCTCTC
1 TGCTTGGGCGAGAGTAGTACTAGATTGGATGACCTCCAGGAAAGTAACCGTGTTGCACCCCTCCC
* * * * * *
33166464 GTTTTATTTCATATAAAGCTGCTTTTCGTTGCATTATCTACACGTGGTGTAACTAATTACTTATT
66 ATTTTACTTCATATAAAGCTGCTTTTAGTAGAATTATCTAAACGTGGTGTAACTAATTACTTATT
* *
33166529 TTCATTTTGCGAAATAAATAATTTAAAACGTTATTTGGCCGAATTTGTGTGAGAGTAGCAAAGCT
131 TTCATTTTGCGAAATAAATAACTTAAAACATTATTTGGCCGAATTTGTGTGAGAGTAGCAAAGCT
* *
33166594 TGCTTGGGCGAGAGTAGTGCTATGATT-GATGACCTCCTAGG-AAGT-CCTCGTGTTGCACCCCT
1 TGCTTGGGCGAGAGTAGTACTA-GATTGGATGACCTCC-AGGAAAGTAAC-CGTGTTGCACCCCT
** * *
33166656 CCCATTTTACTTCATATAAAG-TTTTTTTAAGTAGAATTTTCTAAACGTGGTGTAACTAATTAGT
63 CCCATTTTACTTCATATAAAGCTGCTTTT-AGTAGAATTATCTAAACGTGGTGTAACTAATTACT
* *
33166720 TATTTT-AGTTTTGCGAAATAAATAACTTGAAACATTATTTGGTCGAATTTG
127 TATTTTCA-TTTTGCGAAATAAATAACTTAAAACATTATTTGGCCGAATTTG
33166771 CATTCAAATT
Statistics
Matches: 151, Mismatches: 21, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
194 7 0.05
195 138 0.91
196 6 0.04
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.37
Consensus pattern (195 bp):
TGCTTGGGCGAGAGTAGTACTAGATTGGATGACCTCCAGGAAAGTAACCGTGTTGCACCCCTCCC
ATTTTACTTCATATAAAGCTGCTTTTAGTAGAATTATCTAAACGTGGTGTAACTAATTACTTATT
TTCATTTTGCGAAATAAATAACTTAAAACATTATTTGGCCGAATTTGTGTGAGAGTAGCAAAGCT
Found at i:33167520 original size:225 final size:226
Alignment explanation
Indices: 33167188--33167646 Score: 638
Period size: 227 Copynumber: 2.0 Consensus size: 226
33167178 GCGTGCTTGG
* * * * *
33167188 GCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAATGCCTCGTGTTTCACCCCTCCCATTTTAA
1 GCAATAGTAGTACTAGGATGGATAACCTCCTGGGAATGCCTCGTGTTGCACCCCTCCAATTTTAA
* * *
33167253 TTCATATAAAAATTTTTTCTATTGAATTTTCTACACGTGGTGTAACCAATTAG-TAATGT-GTTT
66 TTCATATAAAAATTTTTTCTATAGAATTTTCTAAACGTGGTGTAACCAATTAGTTAATGTCATTT
* * *
33167316 TGTGAAATAAATAATTTGAAACCTTATTTTGTCGAATGTGCATTCAAATTCCAGGCGCAAGTACG
131 TGCGAAATAAATAATTTGAAACCTTATTTGGTCGAATGTGCATTCAAATTCCAGGCGCAAGTACA
*
33167381 ATAAGGGCCAGCCTTTATATAAATAGATTGC
196 ATAAGGGCCAGCCTTTATATAAATAGATTAC
*
33167412 GCAATAGTAGTACTAGGATGGATAACCTTCCTGGGAA-GTCCTCGTGTTGCACCGCTCCAATTTT
1 GCAATAGTAGTACTAGGATGGATAACC-TCCTGGGAATG-CCTCGTGTTGCACCCCTCCAATTTT
* * * * * * *
33167476 ATTTCATAT-AAAGTTTTTTTTACTAGAATTTTCTAAATGTGGTGTAACTAATTAGTTATTTTCA
64 AATTCATATAAAAATTTTTTCTA-TAGAATTTTCTAAACGTGGTGTAACCAATTAGTTAATGTCA
* * *
33167540 TTTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGT
128 TTTTGCGAAATAAATAATTTGAAACCTTATTTGGTCGAATGTGCATTCAAATTCCAGGCGCAAGT
* *
33167605 GCAATAAGGGGCAGCCTTTATATAAATAGATTAC
193 ACAATAAGGGCCAGCCTTTATATAAATAGATTAC
33167639 GCAATAGT
1 GCAATAGT
33167647 TAACGGGTAC
Statistics
Matches: 205, Mismatches: 25, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
224 36 0.18
225 67 0.33
226 4 0.02
227 98 0.48
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (226 bp):
GCAATAGTAGTACTAGGATGGATAACCTCCTGGGAATGCCTCGTGTTGCACCCCTCCAATTTTAA
TTCATATAAAAATTTTTTCTATAGAATTTTCTAAACGTGGTGTAACCAATTAGTTAATGTCATTT
TGCGAAATAAATAATTTGAAACCTTATTTGGTCGAATGTGCATTCAAATTCCAGGCGCAAGTACA
ATAAGGGCCAGCCTTTATATAAATAGATTAC
Found at i:33167575 original size:812 final size:783
Alignment explanation
Indices: 33165891--33168646 Score: 2770
Period size: 799 Copynumber: 3.4 Consensus size: 783
33165881 TTTTTAGTTA
* * * * * *
33165891 AATTTTCTACACGTGGTGTAACTAAATAGTAATTTGCGTTTTGCGAAATAAATAATTTGAAATGT
1 AATTTTCTAAACGTGGTGTAACTAATTAGTTATTTTCATTTTGCGAAATAAATAATTTGAAACGT
* * * * * *
33165956 TATTTTGTCGAATTTGCATTCATATTTGAGGCACAAGTGCGATAGGGGGCAGGCTTTGTATAAAT
66 TATTTGGTCGAATTTGCATTCAAATTCGAGGCACAAGTGCGATAAGGGGCAGCCTTTATATAAAT
* * * * * *
33166021 AGATTGTGTGAGAGTTGACGGGTGTGATCGTACCAGCAGTAATGCACAGGATCCCATCAGAACTC
131 AGATTGCGTAAGAGTTGACGGGTGTGATCATACCAGTAGCAATGCACTGGATCCCATCAGAACTC
** * * * *
33166086 CTTAGTTAAGCGTGCTTGCGAGATAGTAGTACTATGATGGGTGACCTT-CTAGGAAGTCCTCGTG
196 CGCAGTTAAGCGTGCTTGCGGGATAGGAGTACTAGGATGGGTGACCTTCCTGGGAAGTCCTCGTG
* * *
33166150 TTGCACCTC-TCTAATTTTATTTCATATAAAG--TTTTTTAGTTAAATTTTCTAAACGTGGTGTA
261 TTGCACCCCTTCCAATTTTATTTCATATAAAGTTTTTTTTAGTTGAATTTTCT-AACGTGGTGTA
* * * *
33166212 ACTAATTAGTTATTTGCGTTTTGCAAAATAAATAATTTCAAACGTTATTTGGTCAAATTTTCATT
325 ACTAATTAGTTATTTTCGTTTTG-------------------CGTTATTTGGTCGAATGTGCATT
* * * *
33166277 CAAATTCGAGGCGCAAGTGCGATAAGGGGCAA-CCTTTATATAAATAGATTGCGCAAGAGTTGAG
371 CAAATTCGAGGCGCAAGTGCGATAA-AGGCAAGCCTTAATATAAAAAGATTGCGCAAGAGTTAAG
* * * * * * * * * * *
33166341 GGGTACCATCATACCAACGCTAGTGCACCGGATCCCATCAGAACTCCGCAGCTAAG-GATGCTTG
435 TGGTGCAACCATACCAGCACTAATGCACCGGATCCCATCAAAACTCCACAGTTAAGCG-TACTTG
* * * * * * * *
33166405 GGCGAGATTAGTACTAGGTTGGGTGACCTCCAGGAAAGTAAC-CGTGTTGCGCCCCTCTCGTTTT
499 GGCAAGAGTAGTACTAGGATGGGTGACCTCCAGGGAAGT-CCTCGTGTTGCACCCCTCCCATTTT
* ** * * * * * * * *
33166469 ATTTCATATAAAGCTGCTTTTCGTTGCATTATCTACACGTGGTGTAACTAATTACTTATTTTCAT
563 AATTCATATAAAAATGTTTTTCATTGAATTTTCTACACGTGGTGTAACCAATTACGTAATGTCAT
** * ** * * *
33166534 TTTGCGAAATAAATAATTTAAAACGTTATTTGGCCGAATTTGTGTGAGAGTAGCA-AAGCTTGCT
628 TTTGCGAAATAAATAAGCTAAAACATTATTTGGCCGAATTTCCGCGAGAGTAG-ATAAGCGTGAT
* * * * * *
33166598 TGGGCGAGAGTAGTGCTATGATTGATGACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCCCATTT
692 TGCGCAAGAGTAGTACTAGGATGGATGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTT
* * *
33166663 TACTTCATATAAAGTTTTTTTAAGTAG
757 TATTTCATATAAAGTTTTTTTTACTAG
* *
33166690 AATTTTCTAAACGTGGTGTAACTAATTAGTTATTTT-AGTTTTGCGAAATAAATAACTTGAAACA
1 AATTTTCTAAACGTGGTGTAACTAATTAGTTATTTTCA-TTTTGCGAAATAAATAATTTGAAACG
33166754 TTATTTGGTCGAATTTGCATTCAAATTCGAGGCACAAGTGCGATAAGGGGCAGCCTTTATATAAA
65 TTATTTGGTCGAATTTGCATTCAAATTCGAGGCACAAGTGCGATAAGGGGCAGCCTTTATATAAA
* *
33166819 TAGATTGCGTAAGAGTTGACGGGTGTGATCATACGAGTAGCAATGCACTGGATCCCATTAGAACT
130 TAGATTGCGTAAGAGTTGACGGGTGTGATCATACCAGTAGCAATGCACTGGATCCCATCAGAACT
* * *
33166884 CCGCAGTTAATCCTGCTTGCGGGATAGGAGTACTAGGATGGGTGACCTTCCTGGGAAATCCTCGT
195 CCGCAGTTAAGCGTGCTTGCGGGATAGGAGTACTAGGATGGGTGACCTTCCTGGGAAGTCCTCGT
* * * *
33166949 GTTGCAACCC-TCCAATTCTATTTTATATAAAGTTTTTTTTAGTTGAATTTGCTGAACGTGGTGT
260 GTTGCACCCCTTCCAATTTTATTTCATATAAAGTTTTTTTTAGTTGAATTTTCT-AACGTGGTGT
* *
33167013 AACTAATTAGTTATTTTCGTTTTGCGTTATTTGGTCGAATTTGCATTGAAATTCGAGGCGCAAGT
324 AACTAATTAGTTATTTTCGTTTTGCGTTATTTGGTCGAATGTGCATTCAAATTCGAGGCGCAAGT
** * *
33167078 GCGA-AAAGGGTAGCCTTAATATAAATAGATTGCGCAAGAGTTAACG-GGTGCGACCATACCAGC
389 GCGATAAAGGCAAGCCTTAATATAAAAAGATTGCGCAAGAGTTAA-GTGGTGCAACCATACCAGC
*
33167141 ACTAATGCACCGGATCCCATCAAAACTCCACAGTTAAGCGTGCTTGGGCAAGAGTAGTACTAGGA
453 ACTAATGCACCGGATCCCATCAAAACTCCACAGTTAAGCGTACTTGGGCAAGAGTAGTACTAGGA
* *
33167206 TGGGTGACCTCCTGGGAA-TGCCTCGTGTTTCACCCCTCCCATTTTAATTCATATAAAAAT-TTT
518 TGGGTGACCTCCAGGGAAGT-CCTCGTGTTGCACCCCTCCCATTTTAATTCATATAAAAATGTTT
* * **
33167269 TTCTATTGAATTTTCTACACGTGGTGTAACCAATTA-GTAATGT-GTTTTGTGAAATAAATAATT
582 TTC-ATTGAATTTTCTACACGTGGTGTAACCAATTACGTAATGTCATTTTGCGAAATAAATAAGC
* * * *
33167332 TGAAACCTTATTTTGTCGAATGTGCATTCAAATTCCAGGCGCA-AGTACGATAAGGGCCAGCCTT
646 TAAAACATTATTTGGCCG-A-----A-T----TTCC--GCG-AGAGTA-GATAA--G-C-G----
* *
33167396 TATATAAATAGATTGCGCAATAGTAGTACTAGGATGGATAACCTTCCTGGGAAGTCCTCGTGTTG
688 --------T-GATTGCGCAAGAGTAGTACTAGGATGGATGACC-TCCTGGGAAGTCCTCGTGTTG
* *
33167461 CACCGCTCCAATTTTATTTCATATAAAGTTTTTTTTACTAG
743 CACCCCTCCCATTTTATTTCATATAAAGTTTTTTTTACTAG
*
33167502 AATTTTCTAAATGTGGTGTAACTAATTAGTTATTTTCATTTTGCGAAATAAATAATTTGAAACGT
1 AATTTTCTAAACGTGGTGTAACTAATTAGTTATTTTCATTTTGCGAAATAAATAATTTGAAACGT
* *
33167567 TATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCAATAAGGGGCAGCCTTTATATAAAT
66 TATTTGGTCGAATTTGCATTCAAATTCGAGGCACAAGTGCGATAAGGGGCAGCCTTTATATAAAT
* * * * ** * ** * ** *
33167632 AGATTACGCAATAGTTAACGGGTACGACCATACCAACA-CTAATGCAC-CGATCTGATCAAAACT
131 AGATTGCGTAAGAGTTGACGGGTGTGATCATACCAGTAGC-AATGCACTGGATCCCATCAGAACT
* * *
33167695 CCACAGTTAAGCGTGC-T-CGGGCA-AGAGTAGAACTAGGATGGGTGACC-TCCTGGGAAGGCCT
195 CCGCAGTTAAGCGTGCTTGCGGG-ATAG-G-AGTACTAGGATGGGTGACCTTCCTGGGAAGTCCT
*
33167756 CGTGTTGCACCCCTTCC-ATTTTATTTCATATAAAGTTTTTTTT-GTTGAATTTTCTACACGTGT
257 CGTGTTGCACCCCTTCCAATTTTATTTCATATAAAGTTTTTTTTAGTTGAATTTTCTA-ACGTGG
* *
33167819 TGTAACTAATTAGTAATTTGCGTTTTGCGATATAAATAATTTGAAACGTTATTTTGTCGAATGTG
321 TGTAACTAATTAG----TT--ATTTT-CG-------T--TTTG---CGTTATTTGGTCGAATGTG
* **
33167884 CATTCAAATTCGAGGCGCAAGTGCGATAATGGCAAGCCTTTCTATAAAAAGATTGCGCAAGAGTT
367 CATTCAAATTCGAGGCGCAAGTGCGATAAAGGCAAGCCTTAATATAAAAAGATTGCGCAAGAGTT
* * * * * *
33167949 GAGTGGTGCAATCATACCAGCACTAATGCACCGGATCCCATTAGAACTCCGCAGTTAAGTGTACT
432 AAGTGGTGCAACCATACCAGCACTAATGCACCGGATCCCATCAAAACTCCACAGTTAAGCGTACT
* * ** * *
33168014 TGGGCGAGATTAGTACTAGTTTGGGTGACCTCCAGGTAAGTCCTCGTGTTGCACCCCTCCCGTTT
497 TGGGCAAGAGTAGTACTAGGATGGGTGACCTCCAGGGAAGTCCTCGTGTTGCACCCCTCCCATTT
* ** * * * * * *
33168079 TATTTCATATAAAGTTGTTTTTCGTTGCATTTTCTACACGTGGTGTAACTAATTACTTATTTTCA
562 TAATTCATATAAAAATGTTTTTCATTGAATTTTCTACACGTGGTGTAACCAATTACGTAATGTCA
* * *
33168144 TTTTGCGAAATAAATAAGCTAAAACATTATTTGGCCGAATTTGCGCGAGAGTAGCTAAGCGTGCT
627 TTTTGCGAAATAAATAAGCTAAAACATTATTTGGCCGAATTTCCGCGAGAGTAGATAAGCGTGAT
* * * * *
33168209 TGGGCGAGAGTAGTACGAGGATTGG-TGACCTCCTGGAAAGACCTCGTGTTGCACCCCTCCCATT
692 TGCGCAAGAGTAGTACTAGGA-TGGATGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* *
33168273 TTATTTAATAT-AA-TGTTTTTTACTAG
756 TTATTTCATATAAAGTTTTTTTTACTAG
*
33168299 AATTTTATAAACGTGGTGTAACTAATTAGTTATTTTCATTTTGCGAAATAAATAATTTGAAACGT
1 AATTTTCTAAACGTGGTGTAACTAATTAGTTATTTTCATTTTGCGAAATAAATAATTTGAAACGT
*
33168364 TATTTGGTCGAATTTGCATTCAAATTCGAGGCACAAGTGCGAT-AGGAGGTAGCCTTTATATAAA
66 TATTTGGTCGAATTTGCATTCAAATTCGAGGCACAAGTGCGATAAGG-GGCAGCCTTTATATAAA
* *
33168428 TAGATTGCGTAAGAGTTGACGGGTGTGGTCATACCAGTAGTAATGCA-TAGGATCCCATCAGAAC
130 TAGATTGCGTAAGAGTTGACGGGTGTGATCATACCAGTAGCAATGCACT-GGATCCCATCAGAAC
* * * * * * * *
33168492 TCCGTAATTAAGCGTGCTTGCGGGATTGTACTATTATGATAGGTGACCTT-CTGGGAAGTCCTCG
194 TCCGCAGTTAAGCGTGCTTGCGGGATAGGAGTACTAGGATGGGTGACCTTCCTGGGAAGTCCTCG
* *
33168556 TGTT--ACCCCTTTCCAATTTTATTTCATATAAAGTTTTTTTTAGTTAAATTTTCTTCACGTGGT
259 TGTTGCACCCC-TTCCAATTTTATTTCATATAAAGTTTTTTTTAGTTGAATTTTC-TAACGTGGT
* * **
33168619 GTAACTAAATAGTAATTAGCGTTTTGCG
322 GTAACTAATTAGTTATTTTCGTTTTGCG
33168647 AAATAAATAA
Statistics
Matches: 1638, Mismatches: 230, Indels: 197
0.79 0.11 0.10
Matches are distributed among these distances:
780 34 0.02
781 15 0.01
782 173 0.11
783 48 0.03
785 1 0.00
786 1 0.00
787 1 0.00
791 2 0.00
792 2 0.00
793 9 0.01
794 4 0.00
795 1 0.00
796 9 0.01
797 172 0.11
798 84 0.05
799 283 0.17
800 69 0.04
801 4 0.00
802 50 0.03
808 1 0.00
809 35 0.02
810 52 0.03
811 71 0.04
812 214 0.13
813 4 0.00
814 1 0.00
815 5 0.00
816 2 0.00
817 5 0.00
818 7 0.00
820 3 0.00
823 1 0.00
824 1 0.00
825 5 0.00
828 43 0.03
829 184 0.11
830 12 0.01
831 30 0.02
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (783 bp):
AATTTTCTAAACGTGGTGTAACTAATTAGTTATTTTCATTTTGCGAAATAAATAATTTGAAACGT
TATTTGGTCGAATTTGCATTCAAATTCGAGGCACAAGTGCGATAAGGGGCAGCCTTTATATAAAT
AGATTGCGTAAGAGTTGACGGGTGTGATCATACCAGTAGCAATGCACTGGATCCCATCAGAACTC
CGCAGTTAAGCGTGCTTGCGGGATAGGAGTACTAGGATGGGTGACCTTCCTGGGAAGTCCTCGTG
TTGCACCCCTTCCAATTTTATTTCATATAAAGTTTTTTTTAGTTGAATTTTCTAACGTGGTGTAA
CTAATTAGTTATTTTCGTTTTGCGTTATTTGGTCGAATGTGCATTCAAATTCGAGGCGCAAGTGC
GATAAAGGCAAGCCTTAATATAAAAAGATTGCGCAAGAGTTAAGTGGTGCAACCATACCAGCACT
AATGCACCGGATCCCATCAAAACTCCACAGTTAAGCGTACTTGGGCAAGAGTAGTACTAGGATGG
GTGACCTCCAGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTAATTCATATAAAAATGTTTTTCA
TTGAATTTTCTACACGTGGTGTAACCAATTACGTAATGTCATTTTGCGAAATAAATAAGCTAAAA
CATTATTTGGCCGAATTTCCGCGAGAGTAGATAAGCGTGATTGCGCAAGAGTAGTACTAGGATGG
ATGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAAAGTTTTTTTTAC
TAG
Found at i:33168369 original size:193 final size:195
Alignment explanation
Indices: 33168012--33168380 Score: 528
Period size: 193 Copynumber: 1.9 Consensus size: 195
33168002 GTTAAGTGTA
* * * * * *
33168012 CTTGGGCGAGATTAGTACTAGTTTGGGTGACCTCCAGGTAAGTCCTCGTGTTGCACCCCTCCCGT
1 CTTGGGCGAGAGTAGTACGAGATTGGGTGACCTCCAGGAAAGACCTCGTGTTGCACCCCTCCCAT
* * * * * *
33168077 TTTATTTCATATAAAGTTGTTTTTCGTTGCATTTTCTACACGTGGTGTAACTAATTACTTATTTT
66 TTTATTTAATATAAAGTTGTTTTACGTAGAATTTTATAAACGTGGTGTAACTAATTACTTATTTT
33168142 CATTTTGCGAAATAAATAAGCTAAAACATTATTTGGCCGAATTTGCGCGAGAGTAGCTAAGCGTG
131 CATTTTGCGAAATAAATAAGCTAAAACATTATTTGGCCGAATTTGCGCGAGAGTAGCTAAGCGTG
*
33168207 CTTGGGCGAGAGTAGTACGAGGATT-GGTGACCTCCTGGAAAGACCTCGTGTTGCACCCCTCCCA
1 CTTGGGCGAGAGTAGTACGA-GATTGGGTGACCTCCAGGAAAGACCTCGTGTTGCACCCCTCCCA
* *
33168271 TTTTATTTAATATAATGTT-TTTTAC-TAGAATTTTATAAACGTGGTGTAACTAATTAGTTATTT
65 TTTTATTTAATATAAAGTTGTTTTACGTAGAATTTTATAAACGTGGTGTAACTAATTACTTATTT
** * * *
33168334 TCATTTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATTTGC
130 TCATTTTGCGAAATAAATAAGCTAAAACATTATTTGGCCGAATTTGC
33168381 ATTCAAATTC
Statistics
Matches: 153, Mismatches: 20, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
193 75 0.49
194 5 0.03
195 70 0.46
196 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (195 bp):
CTTGGGCGAGAGTAGTACGAGATTGGGTGACCTCCAGGAAAGACCTCGTGTTGCACCCCTCCCAT
TTTATTTAATATAAAGTTGTTTTACGTAGAATTTTATAAACGTGGTGTAACTAATTACTTATTTT
CATTTTGCGAAATAAATAAGCTAAAACATTATTTGGCCGAATTTGCGCGAGAGTAGCTAAGCGTG
Done.