Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 108 of 144
Found at i:33168646 original size:496 final size:495
Alignment explanation
Indices: 33167702--33168656 Score: 1251
Period size: 496 Copynumber: 1.9 Consensus size: 495
33167692 ACTCCACAGT
* * *
33167702 TAAGCGTGCTCGGGCAAGAGTAGAACTAGGATGGGTGACCTCCTGGGAAGGCCTCGTGTTGCACC
1 TAAGCGTGCTCGGGCAAGAGTAGAACGAGGATGGGTGACCTCCTGGAAAGACCTCGTGTTGCACC
* * ** * * * *
33167767 CCTTCCATTTTATTTCATATAAAGTTTTTTTTGTTGAATTTTCTACACGTGTTGTAACTAATTAG
66 CCTCCCATTTTATTTAATATAAAGTTTTTTTACTAGAATTTTATAAACGTGGTGTAACTAATTAG
* * *
33167832 TAATTTGCGTTTTGCGATATAAATAATTTGAAACGTTATTTTGTCGAATGTGCATTCAAATTCGA
131 TAATTTGCATTTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATGTGCATTCAAATTCGA
* *
33167897 GGCGCAAGTGCGATAATGGCAAGCCTTTCTATAAAAAGATTGCGCAAGAGTTGAGTGGTGCAATC
196 GGCACAAGTGCGATAATGGCAAGCCTTTATATAAAAAGATTGCGCAAGAGTTGAGTGGTGCAATC
* * * *
33167962 ATACCAGCACTAATGCACCGGATCCCATTAGAACTCCGCAGTTAAGTGTACTTGGGCGAGATTAG
261 ATACCAGCACTAATGCACAGGATCCCATCAGAACTCCGCAATTAAGCGTACTT-GGCGAGATTAG
* **
33168027 TACTAGTTTGGGTGACCTCCAGGTAAGTCCTCGTGTTGCACCCCTCCCGTTTTATTTCATATAAA
325 TACTAGTTTGGGTGACCTCCAGGGAAGTCCTCGTGTT-CACCCCTCCAATTTTATTTCATATAAA
* ** * * **
33168092 GTTGTTTTTCGTTGCATTTTCTACACGTGGTGTAACTAATTACTTATTTTCATTTTGCGAAATAA
389 GTTGTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAAATACTAATTAGCATTTTGCGAAATAA
33168157 ATAAGCTAAAACATTATTTGGCCGAATTTGCGCGAGAGTAGC
454 ATAAGCTAAAACATTATTTGGCCGAATTTGCGCGAGAGTAGC
* * * *
33168199 TAAGCGTGCTTGGGCGAGAGTAGTACGAGGATTGGTGACCTCCTGGAAAGACCTCGTGTTGCACC
1 TAAGCGTGCTCGGGCAAGAGTAGAACGAGGATGGGTGACCTCCTGGAAAGACCTCGTGTTGCACC
*
33168264 CCTCCCATTTTATTTAATATAATG-TTTTTTACTAGAATTTTATAAACGTGGTGTAACTAATTAG
66 CCTCCCATTTTATTTAATATAAAGTTTTTTTACTAGAATTTTATAAACGTGGTGTAACTAATTAG
* * *
33168328 TTATTTTCATTTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATTTGCATTCAAATTCGA
131 TAATTTGCATTTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATGTGCATTCAAATTCGA
* * * **
33168393 GGCACAAGTGCGATAGGA-GG-TAGCCTTTATATAAATAGATTGCGTAAGAGTTGACG-GGTGTG
196 GGCACAAGTGCGATA--ATGGCAAGCCTTTATATAAAAAGATTGCGCAAGAGTTGA-GTGGTGCA
* * * * * * *
33168455 GTCATACCAGTAGTAATGCATAGGATCCCATCAGAACTCCGTAATTAAGCGTGCTT-GCGGGATT
258 ATCATACCAGCACTAATGCACAGGATCCCATCAGAACTCCGCAATTAAGCGTACTTGGCGAGATT
* *
33168519 -GTACTA-TTATGATAGGTGACCTTCTGGGAAGTCCTCGTGTT-ACCCCTTTCCAATTTTATTTC
323 AGTACTAGTT-TG---GGTGACCTCCAGGGAAGTCCTCGTGTTCACCCC--TCCAATTTTATTTC
* * * *
33168581 ATATAAAGTTTTTTTTAGTTAAATTTTCTTCACGTGGTGTAACTAAATAGTAATTAGCGTTTTGC
382 ATATAAAGTTGTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAAATACTAATTAGCATTTTGC
33168646 GAAATAAATAA
447 GAAATAAATAA
33168657 TTTGAATTTT
Statistics
Matches: 393, Mismatches: 56, Indels: 19
0.84 0.12 0.04
Matches are distributed among these distances:
492 2 0.01
493 8 0.02
494 12 0.03
496 288 0.73
497 82 0.21
498 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (495 bp):
TAAGCGTGCTCGGGCAAGAGTAGAACGAGGATGGGTGACCTCCTGGAAAGACCTCGTGTTGCACC
CCTCCCATTTTATTTAATATAAAGTTTTTTTACTAGAATTTTATAAACGTGGTGTAACTAATTAG
TAATTTGCATTTTGCGAAATAAATAATTTGAAACGTTATTTGGTCGAATGTGCATTCAAATTCGA
GGCACAAGTGCGATAATGGCAAGCCTTTATATAAAAAGATTGCGCAAGAGTTGAGTGGTGCAATC
ATACCAGCACTAATGCACAGGATCCCATCAGAACTCCGCAATTAAGCGTACTTGGCGAGATTAGT
ACTAGTTTGGGTGACCTCCAGGGAAGTCCTCGTGTTCACCCCTCCAATTTTATTTCATATAAAGT
TGTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAAATACTAATTAGCATTTTGCGAAATAAAT
AAGCTAAAACATTATTTGGCCGAATTTGCGCGAGAGTAGC
Found at i:33168713 original size:72 final size:72
Alignment explanation
Indices: 33168591--33168734 Score: 234
Period size: 72 Copynumber: 2.0 Consensus size: 72
33168581 ATATAAAGTT
* * *
33168591 TTTTTTAGTTAAATTTTCTTCACGTGGTGTAACTAAATAGTAATTAGCGTTTTGCGAAATAAATA
1 TTTTTTAGGTAAATTTTCTACACGTGGTGTAACAAAATAGTAATTAGCGTTTTGCGAAATAAATA
33168656 ATTTGAA
66 ATTTGAA
* * *
33168663 TTTTTTAGGTAAATTTTCTACACGTGGTGTAACAAAATTGTAATTTGCGTTTTGTGAAATAAATA
1 TTTTTTAGGTAAATTTTCTACACGTGGTGTAACAAAATAGTAATTAGCGTTTTGCGAAATAAATA
33168728 ATTTGAA
66 ATTTGAA
33168735 ATGTTATTTT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 66 1.00
ACGTcount: A:0.33, C:0.08, G:0.16, T:0.43
Consensus pattern (72 bp):
TTTTTTAGGTAAATTTTCTACACGTGGTGTAACAAAATAGTAATTAGCGTTTTGCGAAATAAATA
ATTTGAA
Found at i:33169366 original size:303 final size:302
Alignment explanation
Indices: 33168663--33169416 Score: 910
Period size: 302 Copynumber: 2.5 Consensus size: 302
33168653 ATAATTTGAA
* * *
33168663 TTTTTTAGGTAAATTTTCTACACGTGGTGTAACAAAATT-GTAATTTGCGTTTTGTGAAATAAAT
1 TTTTTTAGTTAAATTTTCTACACGTGGTGTAAC-TAATTAGTAATTTGCGTTTTGCGAAATAAAT
* * * *
33168727 AATTTGAAATGTTATTTTGTCGAATTTGCTTTCAAATTTGAGGCGCAAGTGCGATAGGGGGCAGC
65 AATTTGAAACGTTATTTTGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGC
* * * * ** * *
33168792 CTTTATATAAATAGATTGTGTGAGAGTTGACGGGTGTGATTATACCAACAGTAATGCATAGGATC
130 CTTTATATAAATAGATTGCGTAAGAGTTAACGGGTGCGACCATACCAACACTAATGCACAGGATC
* ** * ** * * **
33168857 CCATCAGAGTTGCACCTTCTAGGAATGCTTTCGAGATAGTAGTACTATTATGGGTGACCTTCTAG
195 CCATCAAAACTCCACAGTCTAAGAATGCTTTCGAGAGAGTAGTACTAGGATGGGTGACCTTCTAG
* * *
33168922 GAAGTCCTCGTGTTGCACCTCTCCACTTTTATTTCATATAAAG
260 GAAGGCCTCGTGTTGCACCCCTCCACTTTTAATTCATATAAAG
* * * *
33168965 TTTTTTAGTTAAATTTTCTAAACGTGGTGTAACTAATAAGTTATTTACGTTTTGCGAAATAAATA
1 TTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAATTAGTAATTTGCGTTTTGCGAAATAAATA
* * * *
33169030 ATTTCAAACGTTATTTGGTCGAATTTACATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCC
66 ATTTGAAACGTTATTTTGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCC
* * *
33169095 TTAATATAAATAGATTGCGTAAGAGTTAACGGGTGCGACCATACCAGCACTAATGCACCGGATCC
131 TTTATATAAATAGATTGCGTAAGAGTTAACGGGTGCGACCATACCAACACTAATGCACAGGATCC
**
33169160 CATCAAAACTCCACAGT-TAAGCGTGCTTGT-GCA-AGAGTAGTACTAGGATGGGTGA-CTTCTT
196 CATCAAAACTCCACAGTCTAAGAATGCTT-TCG-AGAGAGTAGTACTAGGATGGGTGACCTTC-T
* * * *
33169221 GGGAGGGCCTCGTGTTTCACCCCTCTCA-TTTTAATTCATATAATG
258 AGGAAGGCCTCGTGTTGCACCCCTC-CACTTTTAATTCATATAAAG
* *
33169266 TTTTTTTCTA-TTGAATTTTCTACACGTGGTGTAACTAATTAGTAATTTGTGTTTTGCGAAATAA
1 --TTTTT-TAGTTAAATTTTCTACACGTGGTGTAACTAATTAGTAATTTGCGTTTTGCGAAATAA
* * * * * *
33169330 CTAATTTGAAACGTTATTTTGTCGAATGTGCATTCAAATTCCAGGCGCATGTACGATAAGGGCCA
63 ATAATTTGAAACGTTATTTTGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCA
33169395 GCCTTTATATAAATAGATTGCG
128 GCCTTTATATAAATAGATTGCG
33169417 CAAGGGTAGT
Statistics
Matches: 382, Mismatches: 62, Indels: 15
0.83 0.14 0.03
Matches are distributed among these distances:
300 4 0.01
301 67 0.18
302 180 0.47
303 129 0.34
304 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.35
Consensus pattern (302 bp):
TTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAATTAGTAATTTGCGTTTTGCGAAATAAATA
ATTTGAAACGTTATTTTGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCC
TTTATATAAATAGATTGCGTAAGAGTTAACGGGTGCGACCATACCAACACTAATGCACAGGATCC
CATCAAAACTCCACAGTCTAAGAATGCTTTCGAGAGAGTAGTACTAGGATGGGTGACCTTCTAGG
AAGGCCTCGTGTTGCACCCCTCCACTTTTAATTCATATAAAG
Found at i:33169757 original size:13 final size:13
Alignment explanation
Indices: 33169739--33169763 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33169729 TAAGTTATAT
33169739 GTGTGAAAATTTC
1 GTGTGAAAATTTC
33169752 GTGTGAAAATTT
1 GTGTGAAAATTT
33169764 GATAGTTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:33171754 original size:15 final size:14
Alignment explanation
Indices: 33171720--33171749 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
33171710 CCAAGCTTAT
33171720 TATATTTAAATATA
1 TATATTTAAATATA
33171734 TATATTT-AATATA
1 TATATTTAAATATA
33171747 TAT
1 TAT
33171750 GTATTGAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TATATTTAAATATA
Found at i:33176761 original size:13 final size:13
Alignment explanation
Indices: 33176743--33176767 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33176733 TAAGTTATAT
33176743 GTGTGAAAATTTC
1 GTGTGAAAATTTC
33176756 GTGTGAAAATTT
1 GTGTGAAAATTT
33176768 GATAGTTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:33179186 original size:286 final size:284
Alignment explanation
Indices: 33178852--33179369 Score: 783
Period size: 286 Copynumber: 1.8 Consensus size: 284
33178842 CAAGTACGAG
* * * *
33178852 GCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCAATCATACCAGCACTAACGTACC-AG
1 GCCTTTATATAAATAGATTACGCAAGAGTTAACGGGTGCAACCATACCAGCACTAACGCACCGA-
* * * * *
33178916 ATCCCATTAGAACTACGCAG-CTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTTC
65 AACCCATCAAAACTACACAGTC-AAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACC-TC
* *
33178980 CTGGGAAGTCCTCGTGT-TGCACCCCTCCAATTTTATTTCATATAAAG-TTTTTTCTTAGTTGAA
128 CTGGGAAGGCCTCGTGTGT-CACCCCTCCAATTTTAATTCATATAAAGTTTTTTTC-TA-TTGAA
* *
33179043 TTTTCTAAACGTGGTGTAACTAATCAGTTATTTTCGTTTTGCATTATTTGGTCGAATTTAAATTC
190 TTTTCTAAACGTGGTGTAACTAATCAGTAATTTGCGTTTTGCATTATTTGGTCGAATTTAAATTC
33179108 AAATTCGAGGCGCAAGTACGAAAAGGGGTA
255 AAATTCGAGGCGCAAGTACGAAAAGGGGTA
* *
33179138 GCCTTTATATAAATAGATTACGCAAGAGTTAACGGGTGCGACCATACCAGCACTAATGCACCGAA
1 GCCTTTATATAAATAGATTACGCAAGAGTTAACGGGTGCAACCATACCAGCACTAACGCACCGAA
*
33179203 ACCCATCAAAACTCCACAGTCAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTG
66 ACCCATCAAAACTACACAGTCAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTG
*
33179268 GGAAGGCCTCGTGTGTCACCCCTCCCATTTTAATTCATATAAAGTTTTTTTCTATTGAATTTTCT
131 GGAAGGCCTCGTGTGTCACCCCTCCAATTTTAATTCATATAAAGTTTTTTTCTATTGAATTTTCT
* *
33179333 ACACGTGGTGTAACTAATTAGTAATTTGCGTTTTGCA
196 AAACGTGGTGTAACTAATCAGTAATTTGCGTTTTGCA
33179370 AAATAAATAA
Statistics
Matches: 209, Mismatches: 19, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
284 44 0.21
285 46 0.22
286 117 0.56
287 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (284 bp):
GCCTTTATATAAATAGATTACGCAAGAGTTAACGGGTGCAACCATACCAGCACTAACGCACCGAA
ACCCATCAAAACTACACAGTCAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTG
GGAAGGCCTCGTGTGTCACCCCTCCAATTTTAATTCATATAAAGTTTTTTTCTATTGAATTTTCT
AAACGTGGTGTAACTAATCAGTAATTTGCGTTTTGCATTATTTGGTCGAATTTAAATTCAAATTC
GAGGCGCAAGTACGAAAAGGGGTA
Found at i:33179824 original size:512 final size:511
Alignment explanation
Indices: 33178953--33179980 Score: 1727
Period size: 512 Copynumber: 2.0 Consensus size: 511
33178943 TGCTTGGGCG
*
33178953 AGAGTAGTACTAGGATGGGTGACCTTCCTGGGAAGTCCTCGTGTTGCACCCCTCCAATTTTATTT
1 AGAGTAGTACTAGGATGGGTGACCTTCCTGGGAAGTCCTCATGTTGCACCCCTCCAATTTTATTT
* *
33179018 CATATAAAGTTTTTTCTTAGTTGAATTTTCTAAACGTGGTGTAACTAATCAGTTATTTTCGTTTT
66 CATATAAAGTTTTTTCTTAGTTGAATTTTCTAAACGTCGTGTAACTAATCAGTTATTTTCGATTT
*
33179083 GCATTATTTGGTCGAATTTAAATTCAAATTCGAGGCGCAAGTACGAAAAGGGGTAGCCTTTATAT
131 GCATTATTTGGTCGAATTTAAATTCAAATTCGAGGCGCAAGTACAAAAAGGGGTAGCCTTTATAT
33179148 AAATAGATTACGCAAGAGTTAACGGGTGCGACCATACCAGCACTAATGCACCGAAACCCATCAAA
196 AAATAGATTACGCAAGAGTTAACGGGTGCGACCATACCAGCACTAATGCACCGAAACCCATCAAA
33179213 ACTCCACAGTCAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTC
261 ACTCCACAGTCAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTC
* * *
33179278 GTGTGTCACCCCTCCCATTTTAATTCATATAAAGTTTTTTTCTATTGAATTTTCTACACGTGGTG
326 CTATGTCACCCCTCCCATTTTAATTCATATAAAGTTTTTTT-TATTGAATTTTCTACACGTAGTG
*
33179343 TAACTAATTAGTAATTTGCGTTTTGCAAAATAAATAATTTGAAACATTATTTTGTCGAATGTGCA
390 TAACTAATTAGTAATTTGCGTTTTGCAAAATAAATAATTTGAAACATTATTTTGTCAAATGTGCA
* *
33179408 TTCAAATTCCAGGCGCAAGTACAATAAGGGCCAGCCTTTATATAAATAGATTGCGCA
455 TTCAAATTCCAGGCACAAATACAATAAGGGCCAGCCTTTATATAAATAGATTGCGCA
*
33179465 AGAGTAGTACTAGGATGGGTGACCTTCCTTGGAAGTCCTCATGTTGCACCCCTCCAATTTTATTT
1 AGAGTAGTACTAGGATGGGTGACCTTCCTGGGAAGTCCTCATGTTGCACCCCTCCAATTTTATTT
*
33179530 CATA-ATAAGTTTTTTCTTAGTTGAATTTTCTAAACGTCGTGTAAGC-AATTAGTTATTTTCGAT
66 CATATA-AAGTTTTTTCTTAGTTGAATTTTCTAAACGTCGTGTAA-CTAATCAGTTATTTTCGAT
* * *
33179593 TTGGATTATTTGGTCGAATTTAATTTCAAATTTGAGGCGCAAGTACAAAAAGGGGTAGCCTTTAT
129 TTGCATTATTTGGTCGAATTTAAATTCAAATTCGAGGCGCAAGTACAAAAAGGGGTAGCCTTTAT
* * * * * * * *
33179658 ATAAATAGATTGCGCAAGATTTTATGGGTGTGACCATACCAGCACTAATGCATCGGATCCCATCA
194 ATAAATAGATTACGCAAGAGTTAACGGGTGCGACCATACCAGCACTAATGCACCGAAACCCATCA
*
33179723 AAACTCCACAGTTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCC
259 AAACTCCACAGTCAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCC
* * *
33179788 TCCTATTTCACCCCTCCCATTTTATTTCATATAAAGTTTTTTTTGTTGAATTTTCTACACGTAGT
324 TCCTATGTCACCCCTCCCATTTTAATTCATATAAAGTTTTTTTTATTGAATTTTCTACACGTAGT
* *
33179853 GTAACTAATTAGTAATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTTGTCAAATGTGC
389 GTAACTAATTAGTAATTTGCGTTTTGCAAAATAAATAATTTGAAACATTATTTTGTCAAATGTGC
* * *
33179918 ATTCAAATTCGAGGCACAAATACGATAATGGCCAGCCTTTATATAAATAGATTGCGCA
454 ATTCAAATTCCAGGCACAAATACAATAAGGGCCAGCCTTTATATAAATAGATTGCGCA
33179976 AGAGT
1 AGAGT
33179981 TGACGGGTGC
Statistics
Matches: 482, Mismatches: 32, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
511 141 0.29
512 340 0.71
513 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (511 bp):
AGAGTAGTACTAGGATGGGTGACCTTCCTGGGAAGTCCTCATGTTGCACCCCTCCAATTTTATTT
CATATAAAGTTTTTTCTTAGTTGAATTTTCTAAACGTCGTGTAACTAATCAGTTATTTTCGATTT
GCATTATTTGGTCGAATTTAAATTCAAATTCGAGGCGCAAGTACAAAAAGGGGTAGCCTTTATAT
AAATAGATTACGCAAGAGTTAACGGGTGCGACCATACCAGCACTAATGCACCGAAACCCATCAAA
ACTCCACAGTCAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTC
CTATGTCACCCCTCCCATTTTAATTCATATAAAGTTTTTTTTATTGAATTTTCTACACGTAGTGT
AACTAATTAGTAATTTGCGTTTTGCAAAATAAATAATTTGAAACATTATTTTGTCAAATGTGCAT
TCAAATTCCAGGCACAAATACAATAAGGGCCAGCCTTTATATAAATAGATTGCGCA
Found at i:33180924 original size:512 final size:510
Alignment explanation
Indices: 33180057--33181079 Score: 1687
Period size: 512 Copynumber: 2.0 Consensus size: 510
33180047 TGGACGAGAT
* *
33180057 TAGTACTAGGATGGGTGACCTTCCTGGGAAGTCCTCTTGTTGCACCCCTCCAATTTTATTTCATA
1 TAGTACTAGGATGGGTGACCTTACTGGGAAGTCCTCATGTTGCACCCCTCCAATTTTATTTCATA
* *
33180122 TAAAGTTTTTTCTTAGTGGAATTTTTGAAACGTGGTGTAACTAATTACTTATTTTCGTTTTGCAT
66 TAAAGTTTTTTCTTAGTGGAATTTTTGAAACGTCGTGTAACTAATTACTTATTTTCGATTTGCAT
*
33180187 TATTTGGTCGAATTTAAATTCAAATTCGAGGCGCAAGTACGAAAAGGGGTAGCCTTTATATAAAA
131 TATTTGGTCGAATTTAAATTCAAATTCGAGGCGCAAGAACGAAAAGGGGTAGCCTTTATATAAAA
* *
33180252 AGATTGCGCATGAGTTAACGGGTGCGACTATACCAGCACTAATGCACCGGATACCATCAAAACTC
196 AGATTGCGCAAGAGTTAACGGGTGCGACCATACCAGCACTAATGCACCGGATACCATCAAAACTC
*
33180317 CACAGTTAAGCGTGCTTGAGAAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTCGTGT
261 CACAGTTAAGCGTGCTTGAGAAAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGGCCTCGTGT
33180382 TTCACCCCTCCAATTTTATTTCATATAAAGTTTTTTTCTATTGAATTTTCTACACGTGGTGTAAC
326 TTCACCCCTCCAATTTTATTTCATATAAAG-TTTTTT-TATTGAATTTTCTACACGTGGTGTAAC
*
33180447 TAATTAGTAATTTGCGTTTTGTGAAATAAATAATTTGAAACGTTATTTTGTCGAATGTGCATTCA
389 TAATTAGTAATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTTGTCGAATGTGCATTCA
* *
33180512 AATTTC-AGGCGCAAGTACAATAAGGGCCAGCCTTTATATAAATAGACTGCACAAGAG
454 AA-TTCGAGGCGCAAATACAATAAGGGACAGCCTTTATATAAATAGACTGCACAAGAG
33180569 TAGTACTAGGATGGGTGACCTTACTGGGAAGTCCTCATGTTGCACCCCTCCAATTTTATTTCATA
1 TAGTACTAGGATGGGTGACCTTACTGGGAAGTCCTCATGTTGCACCCCTCCAATTTTATTTCATA
* *
33180634 -ATAAGTTTTTTCTTAGTTGAATTTTCT-AAACGTCGTGTAAGC-AATTAGTTATTTTCGATTTG
66 TA-AAGTTTTTTCTTAGTGGAATTTT-TGAAACGTCGTGTAA-CTAATTACTTATTTTCGATTTG
* * *
33180696 GATTATTTGGTCGAATTTAAATTCAAATT-TACGGCGCAAGAACGAAAAGGGTTAGCCTTTATAT
128 CATTATTTGGTCGAATTTAAATTCAAATTCGA-GGCGCAAGAACGAAAAGGGGTAGCCTTTATAT
* *
33180760 AAATAGATTGCGCAAGAGTTAACGGGTGCGACCATACCAGCACTAATGCACCGGATCCCATCAAA
192 AAAAAGATTGCGCAAGAGTTAACGGGTGCGACCATACCAGCACTAATGCACCGGATACCATCAAA
* * *
33180825 ACTCCACAGTTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGGTCTC
257 ACTCCACAGTTAAGCGTGCTTGAGAAAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGGCCTC
* *
33180890 GTGTTTCACCCCTCCCATTTTATTTCATATAAAGTTTTTTTGTTGAATTTTCTACACGTGGTGTA
322 GTGTTTCACCCCTCCAATTTTATTTCATATAAAGTTTTTTTATTGAATTTTCTACACGTGGTGTA
* *
33180955 ACTAATTAGTAATTTGCGTTTTGCGAAATAAATAATTTGAAATGTTATTTTGTCGAATGTGCTTT
387 ACTAATTAGTAATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTTGTCGAATGTGCATT
* * * *
33181020 CAAATTCGAGGCGCAAATACGATAATGGACAGCCTTTATATAAATAGATTGCGCAAGAG
452 CAAATTCGAGGCGCAAATACAATAAGGGACAGCCTTTATATAAATAGACTGCACAAGAG
33181079 T
1 T
33181080 TGACGGGTGC
Statistics
Matches: 477, Mismatches: 29, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
509 3 0.01
510 136 0.29
511 8 0.02
512 328 0.69
513 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (510 bp):
TAGTACTAGGATGGGTGACCTTACTGGGAAGTCCTCATGTTGCACCCCTCCAATTTTATTTCATA
TAAAGTTTTTTCTTAGTGGAATTTTTGAAACGTCGTGTAACTAATTACTTATTTTCGATTTGCAT
TATTTGGTCGAATTTAAATTCAAATTCGAGGCGCAAGAACGAAAAGGGGTAGCCTTTATATAAAA
AGATTGCGCAAGAGTTAACGGGTGCGACCATACCAGCACTAATGCACCGGATACCATCAAAACTC
CACAGTTAAGCGTGCTTGAGAAAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGGCCTCGTGT
TTCACCCCTCCAATTTTATTTCATATAAAGTTTTTTTATTGAATTTTCTACACGTGGTGTAACTA
ATTAGTAATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTTGTCGAATGTGCATTCAAA
TTCGAGGCGCAAATACAATAAGGGACAGCCTTTATATAAATAGACTGCACAAGAG
Found at i:33181720 original size:586 final size:583
Alignment explanation
Indices: 33180565--33182177 Score: 2336
Period size: 586 Copynumber: 2.7 Consensus size: 583
33180555 AGACTGCACA
*
33180565 AGAGTAGTACTAGGATGGGTGACCTTACTGGGAAGTCCTCATGTTGCACCCCTCCAATTTTATTT
1 AGAGTAGTACTAGGATGGGTGACCTTCCTGGGAAGTCCTCATGTTGCACCCCTCCAATTTTATTT
* *
33180630 CATA-ATAAGTTTTTTCTTAGTTGAATTTTCTAAACGTCGTGTAAGC-AATTAGTTATTTTCGAT
66 CATATA-AAGTTTTTTCTTAGTTGAATTTT-TAAACAT-GTGTAA-CTAATTAGTTATTTTCGTT
* * * *
33180693 TTGGATTATTTGGTCGAATTTAAATTCAAATTTACGGCGCAAGAACGAAAAGGGTTAGCCTTTAT
127 TTGCATTATTTGGTCGAATTTAAATTCAAATTCAAGGCGCAAGTACGAAAAGGG-TAGCCTTTAT
*
33180758 ATAAATAGATTGCGCAAGAGTTAACGGGTGCGACCATACCAGCACTAATGCACCGGATCCCATCA
191 ATAAATAGATTGCGCAAGAGTTAACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCA
* *
33180823 AAACTCCACAGTTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGGTC
256 AAACTCCACAGTTAAGCGTGCTT-GGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCC
* *
33180888 TCGTGTTTCACCCCTCCCATTTTATTTCATATAAAGTTTTTTTGTTGAATTTTCTACACGTGGTG
320 TCGTGTTTCACCCCTCCAATTTTATTTCATATAAAGTTTTTTTATTGAATTTTCTACACGTGGTG
* * *
33180953 TAACTAATTAGTAATTTGCGTTTTGCGAAATAAATAATTTGAAATGTTATTTTGTCGAATGTGCT
385 TAACTAATTAGTAATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTTGTCGAATGCGCA
*
33181018 TTCAAATTCGAGGCGCAAATACGATAATGGACAGCCTTTATATAAATAGATTGCGCAAGAGTTGA
450 TTCAAATTCGAGGCGCAAATACGATAAGGGACAGCCTTTATATAAATAGATTGCGCAAGAGTTGA
*
33181083 CGGGTGCGATCATACCAGCACTAACGTACCGGATCCCATCAGAACTACGCAGCTAAGCGTGCTTG
515 CGGCTGCGATCATACCAGCACTAACGTACCGGATCCCATCAGAACTACGCAGCTAAGCGTGCTTG
33181148 GGCG
580 GGCG
* *
33181152 AGATTAGTACTAGGATGGGTGACCTTCCTGGGAAGTCCTCTTGTTGCACCCCTCCAATTTTATTT
1 AGAGTAGTACTAGGATGGGTGACCTTCCTGGGAAGTCCTCATGTTGCACCCCTCCAATTTTATTT
33181217 CATATAAAGTTTTTTCTTAGTTGAATTTTTGAAACATGATGTAACTAATTAGTTATTTTCGTTTT
66 CATATAAAGTTTTTTCTTAGTTGAATTTTT-AAACATG-TGTAACTAATTAGTTATTTTCGTTTT
*
33181282 GCATTATTTGGTCGAATTTAAATTCAAATTCGAGGCGCAAGTACGAAAATGGGTAGCCTTTATAT
129 GCATTATTTGGTCGAATTTAAATTCAAATTCAAGGCGCAAGTACGAAAA-GGGTAGCCTTTATAT
* * * *
33181347 AAAAAGATTGCGCATGAGTTAACGGGTGCGATCATACCAGCACTAATGCACCAGATCCTATCAAA
193 AAATAGATTGCGCAAGAGTTAACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAAA
* *
33181412 ACACCACAGTTAAGCGTGCTTGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTTG
258 ACTCCACAGTTAAGCGTGCTTGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTCG
*
33181477 TGTTTCACCCCTCCAATTTTATTTCATATAAAGTTTTTTTTTTGAATTTTCTACACGTGGTGTAA
323 TGTTTCACCCCTCCAATTTTATTTCATATAAAGTTTTTTTATTGAATTTTCTACACGTGGTGTAA
* *
33181542 CTAATTAGTAATTTGTGTTTTGTGAAATAAATAATTTGAAACGTTATTTTGTCGAATGCGCATTC
388 CTAATTAGTAATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTTGTCGAATGCGCATTC
* * *
33181607 AAATTCGAGGCGCAAGTATGATAAGGGCCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGG
453 AAATTCGAGGCGCAAATACGATAAGGGACAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGG
* *
33181672 CTGCGATTATACCAGCACTAATGTACCGGATCCCATCAGAACTACGCAGCTAAGCGTGCTTGGGC
518 CTGCGATCATACCAGCACTAACGTACCGGATCCCATCAGAACTACGCAGCTAAGCGTGCTTGGGC
33181737 G
583 G
* *
33181738 AGAGTAGTACTAGGATGGGTGACCTTCCTCGGAAGTCCTCGTGTTGCACCCCTCCAATTTTATTT
1 AGAGTAGTACTAGGATGGGTGACCTTCCTGGGAAGTCCTCATGTTGCACCCCTCCAATTTTATTT
* * ** *
33181803 CATATAAAGCTTTTT-TTAGTTGATTTTTCTAAATGTCGTGTAACTAATTAGTTATTTGCGTTTT
66 CATATAAAGTTTTTTCTTAGTTGAATTTT-TAAACAT-GTGTAACTAATTAGTTATTTTCGTTTT
* ** * *
33181867 GCGTTA-TTGGTCGAATTTGCATTCAAATTCAAGGCGCAAGTGCGATAAAGGGCAGCCTTTATAT
129 GCATTATTTGGTCGAATTTAAATTCAAATTCAAGGCGCAAGTACGA-AAAGGGTAGCCTTTATAT
* * * * * * *
33181931 AAATAGATTGCGCAAGAGTTGATGGGTTCGATCATACCAGCGCTAATGTATCGGATCCCATCAGA
193 AAATAGATTGCGCAAGAGTTAACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAAA
** * * * * * * * * * *
33181996 ACTCTGCAGTGAAGTGTACGTGGGCGAGATTAGTACTAGGTTGGGTGACCTCCAGGGATGTCCTC
258 ACTCCACAGTTAAGCGTGC-TTGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTC
* ** * * *
33182061 GTATTTCACCCAC-CCTGTTTTATTTCATATAAACTTGTTTTTCATTGCATTTTCTACACATGGT
322 GTGTTTCACCC-CTCCAATTTTATTTCATATAAAGTT-TTTTT-ATTGAATTTTCTACACGTGGT
* ** * * * * *
33182125 GTAACTAATTACTTGTTTTCATTTTACGAAATAAATAATTTAAAACATTATTT
384 GTAACTAATTAGTAATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTT
33182178 GGCCGAATTT
Statistics
Matches: 925, Mismatches: 89, Indels: 24
0.89 0.09 0.02
Matches are distributed among these distances:
584 116 0.13
585 116 0.13
586 375 0.41
587 314 0.34
588 4 0.00
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (583 bp):
AGAGTAGTACTAGGATGGGTGACCTTCCTGGGAAGTCCTCATGTTGCACCCCTCCAATTTTATTT
CATATAAAGTTTTTTCTTAGTTGAATTTTTAAACATGTGTAACTAATTAGTTATTTTCGTTTTGC
ATTATTTGGTCGAATTTAAATTCAAATTCAAGGCGCAAGTACGAAAAGGGTAGCCTTTATATAAA
TAGATTGCGCAAGAGTTAACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAAAACT
CCACAGTTAAGCGTGCTTGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTCGTGT
TTCACCCCTCCAATTTTATTTCATATAAAGTTTTTTTATTGAATTTTCTACACGTGGTGTAACTA
ATTAGTAATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTTGTCGAATGCGCATTCAAA
TTCGAGGCGCAAATACGATAAGGGACAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGCTG
CGATCATACCAGCACTAACGTACCGGATCCCATCAGAACTACGCAGCTAAGCGTGCTTGGGCG
Found at i:33182750 original size:303 final size:298
Alignment explanation
Indices: 33182196--33183543 Score: 1350
Period size: 303 Copynumber: 4.6 Consensus size: 298
33182186 TTGCGCTAGA
* *
33182196 GTAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATTAGTGACCTCCTAGGAAGTCCTCGTGTT
1 GTAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGA-TGGTGACCTCCTGGGAAGTCCTCGTGTT
* * * * ** * * *
33182261 GCACCCCTCCCATTTTACTTCATATAATGTTTTTTTACTAAAATTTTCTAAACGTGGTTTAGCTA
65 GCACCCCTCCAATTTTATTTCATATAAAGTTTTTTTAGTTGAATTTTCTACACGTGGTGTAACTA
*** ** *
33182326 ATTAGTTATTTTAATTTTGTAAAATAAATAATTTGAAACGTTATTTGGACGAATTTGCATTCAAA
130 ATTAGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTT--TCGAATTTGCATTCAAA
* * ** *
33182391 TTCGAGGCACAAGTGCGAT-AGGAGGTAGGGTTTATATAAATAGATTGAGTAAGAGTTGACGGGT
193 TTCGAGGCGCAAGTGCGATAAGG-GGCAGCCTTTATATAAATAGATTG-GAAAGAGTTGACGGGT
* *
33182455 GTAATCATACCAGCAGTAATGCATAGGATCCCATCAGAACTCC
256 GTGATCATACCAGCAGTAATGCACAGGATCCCATCAGAACTCC
* * * * *
33182498 GTAGTTAAGCGTGCTAGCGG-GATAGTAGTATTATGATAGGTGACCTTCTGGGAAGTCCTCGTGT
1 GTAGTTAAGCGTGCTTG-GGCGAGAGTAGTACTAGGAT-GGTGACCTCCTGGGAAGTCCTCGTGT
* * *
33182562 TGCACCTCTCCAATTTTATTTCTTATAAAGTTTTTTTTAGTTAAATTTTCTACACGTGGTGTAAC
64 TGCACCCCTCCAATTTTATTTCATATAAAG-TTTTTTTAGTTGAATTTTCTACACGTGGTGTAAC
* *
33182627 TAAATAGTAATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTTTTCGAATTTGCATTCA
128 TAATTAGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTA--TTTTCGAATTTGCATTCA
* * *
33182692 AATTCGAGACGCAAGTGCGATAGGGGGCAGCCTTTATATAAATAGATTGTGGAAGAGTTGACGGG
191 AATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTG-GAAAGAGTTGACGGG
*
33182757 TGTGATCATAACAGCAGTAATGCACAGGATCCCATCAGAACTCC
255 TGTGATCATACCAGCAGTAATGCACAGGATCCCATCAGAACTCC
* * * * * *
33182801 GTAGTTAAGCGTGCTTGTGAGATAGTAGTACAAGGATGAGTGACCTTCCTGGGAGGTCCTCATGT
1 GTAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG-GTGACC-TCCTGGGAAGTCCTCGTGT
* *
33182866 TGCAACCCTCCAATTTTATTTCATATAAAGTTTTTTTAGTTGAATTTTCTACACGTGGTGAAACT
64 TGCACCCCTCCAATTTTATTTCATATAAAGTTTTTTTAGTTGAATTTTCTACACGTGGTGTAACT
*
33182931 AATTAGTAATTTGCGTTTTGCG---T---T-ATTTG----G------TCGAATTTGCATTCAAAT
129 AATTAGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTTCGAATTTGCATTCAAAT
* * * * * *
33182979 TCGAGGCCCAAGTGCGATAAGGGCCAGCCTTTATATAAATAAATTGCAAAGAGTTAACGGGTGCG
194 TCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGGAAAGAGTTGACGGGTGTG
** * * * ** *
33183044 GCCATACCAACACTAATGCACCGGATCATATCAAAACTCC
259 ATCATACCAGCAGTAATGCACAGGATCCCATCAGAACTCC
** * * * ** *
33183084 ACAGTTAAGCATGCTTGGGCAAGAGTCGTACTAGGATGGCTGACCTCCTGTAAAGGCCTCGTGTT
1 GTAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGG-TGACCTCCTGGGAAGTCCTCGTGTT
* * *
33183149 GCACCCCTCCCATTTTATTTCATATAAAGTTTTTTTAGTTGATTTTTCTAAACGTGGTGTAACTA
65 GCACCCCTCCAATTTTATTTCATATAAAGTTTTTTTAGTTGAATTTTCTACACGTGGTGTAACTA
*
33183214 ATTAGTTATTTGCGTTTTGCG---T---T-ATTTG----G------TCAAATTTGCATTCAAATT
130 ATTAGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTTCGAATTTGCATTCAAATT
* * * * *
33183262 CGAGGCGCAAGTGCGATAAAGGGTAGCCTTTATATAAATAGATTGCACAAGAGTTGATGGGCT-C
195 CGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGGA-AAGAGTTGACGGG-TGT
* * *
33183326 GATCATACCAG-TGCTAATGTACCGGATCCCATCAGAACTCC
258 GATCATACCAGCAG-TAATGCACAGGATCCCATCAGAACTCC
* * * * * * * *
33183367 GCAGTTACGTGTACTTGGGCGAGATTAGTACTAGGTTGGGTGACCTCCAGGGAAGTCCTCGTATT
1 GTAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGAT-GGTGACCTCCTGGGAAGTCCTCGTGTT
** * * *
33183432 GCACCCCTCCTGTTTTATTTCATATAAACTTCTTTTTCGTTGCATTTTCTACACGTGGTGTAACT
65 GCACCCCTCCAATTTTATTTCATATAAAGTT-TTTTTAGTTGAATTTTCTACACGTGGTGTAACT
* * * * * * *
33183497 AATTACTTATTTTCATTTTACGAAAAAAATAATTTAAAACATTATTT
129 AATTAGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTT
33183544 GGCCGAATTT
Statistics
Matches: 881, Mismatches: 133, Indels: 65
0.82 0.12 0.06
Matches are distributed among these distances:
282 164 0.19
283 199 0.23
284 109 0.12
290 1 0.00
291 4 0.00
292 1 0.00
296 5 0.01
297 1 0.00
300 1 0.00
301 1 0.00
302 79 0.09
303 268 0.30
304 45 0.05
305 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (298 bp):
GTAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGTGACCTCCTGGGAAGTCCTCGTGTTG
CACCCCTCCAATTTTATTTCATATAAAGTTTTTTTAGTTGAATTTTCTACACGTGGTGTAACTAA
TTAGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGTTATTTTCGAATTTGCATTCAAATTC
GAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGGAAAGAGTTGACGGGTGTGAT
CATACCAGCAGTAATGCACAGGATCCCATCAGAACTCC
Found at i:33182970 original size:781 final size:766
Alignment explanation
Indices: 33181419--33182935 Score: 1722
Period size: 781 Copynumber: 1.9 Consensus size: 766
33181409 AAAACACCAC
* * * *
33181419 AGTTAAGCGTGCTTGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGGCCTTGTGTTTCA
1 AGTTAAGCGTGCTTGGCAAGAGTAGTACTAGGATGAGTGACCTCCTAGGAAGGCCTCGTGTTGCA
* * ** *
33181484 CCCCTCCAATTTTATTTCATATAAAGTTTTTTTTTTGAATTTTCTACACGTGGTGTAACTAATTA
66 CCCCTCCAATTTTACTTCATATAAAGTTTTTTTCTAAAATTTTCTAAACGTGGTGTAACTAATTA
* * * *
33181549 GTAATTTGTGTTTTGTGAAATAAATAATTTGAAACGTTATTTTGTCGAATGCGCATTCAAATTCG
131 GTAATTTGTATTTTGTAAAATAAATAATTTGAAACGTTATTTGGACGAATGCGCATTCAAATTCG
* * * *
33181614 AGGCGCAAGTATGATAAGGGCCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGCTGCGAT
196 AGGCACAAGTACGATAAGGGCCAGCCTTTATATAAATAGATTGAGCAAGAGTTGACGGCTGCAAT
* * * *
33181679 TATACCAGCACTAATGTACCGGATCCCATCAGAACTACGCAGCTAAGCGTGCTTGGGCGAGAGTA
261 CATACCAGCACTAATGCACAGGATCCCATCAGAACTACGCAGCTAAGCGTGCTAGGGCGAGAGTA
*
33181744 GTACTAGGATGGGTGACCTTCCTCGGAAGTCCTCGTGTTGCACCCCTCCAATTTTATTTCATATA
326 GTACTAGGATAGGTGACCTTCCTCGGAAGTCCTCGTGTTGCACCCCTCCAATTTTATTTCATATA
* * * * *
33181809 AAGCTTTTTTTAGTTGATTTTTCTAAATGTCGTGTAACTAATTAGTTATTTGCGTTTTGCGTTAT
391 AAGCTTTTTTTAGTTAAATTTTCTAAACGTCGTGTAACTAAATAGTAATTTGCGTTTTGCGTTAT
*
33181874 TGGTCGAATTTGCATTCAAATTCAAGGCGCAAGTGCGATAAAGGGCAGCCTTTATATAAATAGAT
456 TGGTCGAATTTGCATTCAAATTCAAGACGCAAGTGCGATAAAGGGCAGCCTTTATATAAATAGAT
* * * *
33181939 TGCGCAAGAGTTGATGGGTTCGATCATACCAGCGCTAATGTATCGGATCCCATCAGAACTCTGCA
521 TGCGCAAGAGTTGACGGGTTCGATCATAACAGCGCTAATGCATCGGATCCCATCAGAACTCCGCA
* * * * * * * * *
33182004 GTGAAGTGTACGTGGGCGAGATTAGTACTAGGTTGGGTGACCTCCAGGGATGTCCTCGTATTTCA
586 GTGAAGCGTACGTGGGAGAGAGTAGTACAAGGATGAGTGACCTCCAGGGAGGTCCTCATATTGCA
** * *
33182069 CCCACCCTGTTTTATTTCATATAAACTTGTTTTTCATTGCATTTTCTACACATGGTGTAACTAAT
651 CCCACCCAATTTTATTTCATATAAACTTGTTTTTCATTGAATTTTCTACACATGGTGAAACTAAT
*
33182134 TACTTGTTTTCATTTTACGAAATAAATAATTTAAAACATTATTTGGCCGAATTTGCGCTAGAGT
716 TA--TG--TTCAATTTACG------AT-ATTT--AACATTATTTGGCCGAATTTGCGCTAGAGT
* * *
33182198 AGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATTAGTGACCTCCTAGGAAGTCCTCGTGTTGC
1 AGTTAAGCGTGCTT-GGCAAGAGTAGTACTAGGATGAGTGACCTCCTAGGAAGGCCTCGTGTTGC
* * * *
33182263 ACCCCTCCCATTTTACTTCATATAATGTTTTTTTACTAAAATTTTCTAAACGTGGTTTAGCTAAT
65 ACCCCTCCAATTTTACTTCATATAAAGTTTTTTT-CTAAAATTTTCTAAACGTGGTGTAACTAAT
* **
33182328 TAGTTATTT-TAATTTTGTAAAATAAATAATTTGAAACGTTATTTGGACGAATTTGCATTCAAAT
129 TAGTAATTTGT-ATTTTGTAAAATAAATAATTTGAAACGTTATTTGGACGAATGCGCATTCAAAT
* ** ** * *
33182392 TCGAGGCACAAGTGCGAT-AGGAGGTAGGGTTTATATAAATAGATTGAGTAAGAGTTGACGGGTG
193 TCGAGGCACAAGTACGATAAGG-GCCAGCCTTTATATAAATAGATTGAGCAAGAGTTGACGGCTG
* * * * * *
33182456 TAATCATACCAGCAGTAATGCATAGGATCCCATCAGAACTCCGTAGTTAAGCGTGCTAGCGG-GA
257 CAATCATACCAGCACTAATGCACAGGATCCCATCAGAACTACGCAGCTAAGCGTGCTAG-GGCGA
* * * * *
33182520 TAGTAGTATTATGATAGGTGACCTT-CTGGGAAGTCCTCGTGTTGCACCTCTCCAATTTTATTTC
321 GAGTAGTACTAGGATAGGTGACCTTCCTCGGAAGTCCTCGTGTTGCACCCCTCCAATTTTATTTC
* * * *
33182584 TTATAAAGTTTTTTTTAGTTAAATTTTCTACACGTGGTGTAACTAAATAGTAATTTGCGTTTTGC
386 ATATAAAGCTTTTTTTAGTTAAATTTTCTAAACGTCGTGTAACTAAATAGTAATTTGCGTTTTGC
*
33182649 GAAATAAATAATTTGAAACGTTATTTTTTCGAATTTGCATTCAAATTCGAGACGCAAGTGCGATA
451 G---T---T-A-TTG----G--------TCGAATTTGCATTCAAATTCAAGACGCAAGTGCGATA
** * *
33182714 GGGGGCAGCCTTTATATAAATAGATTGTGGAAGAGTTGACGGGTGT-GATCATAACAGCAG-TAA
496 AAGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGT-TCGATCATAACAGC-GCTAA
* * * * * *
33182777 TGCA-CAGGATCCCATCAGAACTCCGTAGTTAAGCGTGCTTGTGAGATAGTAGTACAAGGATGAG
559 TGCATC-GGATCCCATCAGAACTCCGCAGTGAAGCGTACGTGGGAGAGAGTAGTACAAGGATGAG
* * * *
33182841 TGACCTTCCTGGGAGGTCCTCATGTTGCAACCC-TCCAATTTTATTTCATATAAAGTT-TTTTT-
623 TGACC-TCCAGGGAGGTCCTCATATTGC-ACCCACCCAATTTTATTTCATATAAACTTGTTTTTC
*
33182903 AGTTGAATTTTCTACACGTGGTGAAACTAATTA
686 A-TTGAATTTTCTACACATGGTGAAACTAATTA
33182936 GTAATTTGCG
Statistics
Matches: 614, Mismatches: 93, Indels: 41
0.82 0.12 0.05
Matches are distributed among these distances:
779 14 0.02
780 172 0.28
781 200 0.33
782 2 0.00
783 1 0.00
786 1 0.00
787 1 0.00
788 3 0.00
792 1 0.00
799 2 0.00
800 174 0.28
801 39 0.06
802 4 0.01
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (766 bp):
AGTTAAGCGTGCTTGGCAAGAGTAGTACTAGGATGAGTGACCTCCTAGGAAGGCCTCGTGTTGCA
CCCCTCCAATTTTACTTCATATAAAGTTTTTTTCTAAAATTTTCTAAACGTGGTGTAACTAATTA
GTAATTTGTATTTTGTAAAATAAATAATTTGAAACGTTATTTGGACGAATGCGCATTCAAATTCG
AGGCACAAGTACGATAAGGGCCAGCCTTTATATAAATAGATTGAGCAAGAGTTGACGGCTGCAAT
CATACCAGCACTAATGCACAGGATCCCATCAGAACTACGCAGCTAAGCGTGCTAGGGCGAGAGTA
GTACTAGGATAGGTGACCTTCCTCGGAAGTCCTCGTGTTGCACCCCTCCAATTTTATTTCATATA
AAGCTTTTTTTAGTTAAATTTTCTAAACGTCGTGTAACTAAATAGTAATTTGCGTTTTGCGTTAT
TGGTCGAATTTGCATTCAAATTCAAGACGCAAGTGCGATAAAGGGCAGCCTTTATATAAATAGAT
TGCGCAAGAGTTGACGGGTTCGATCATAACAGCGCTAATGCATCGGATCCCATCAGAACTCCGCA
GTGAAGCGTACGTGGGAGAGAGTAGTACAAGGATGAGTGACCTCCAGGGAGGTCCTCATATTGCA
CCCACCCAATTTTATTTCATATAAACTTGTTTTTCATTGAATTTTCTACACATGGTGAAACTAAT
TATGTTCAATTTACGATATTTAACATTATTTGGCCGAATTTGCGCTAGAGT
Found at i:33183215 original size:282 final size:278
Alignment explanation
Indices: 33182364--33183501 Score: 1177
Period size: 283 Copynumber: 3.9 Consensus size: 278
33182354 TAATTTGAAA
* * * * **
33182364 CGTTATTTGGACGAATTTGCATTCAAATTCGAGGCACAAGTGCGATAGGAGGTAGGGTTTATATA
1 CGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAG-GGCAGCCTTTATATA
** * **
33182429 AATAGATTG-AGTAAGAGTTGACGGGTGTAATCATACCAGCAGTAATGCATAGGATCCCATCAGA
65 AATAGATTGCA--AAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGA
* * * * * * * *
33182493 ACTCCGTAGTTAAGCGTGCTAGCGG-GATAGTAGTATTATGATAGGTGACCTTCTGGGAAGTCCT
128 ACTCCGCAGTTAAGCGTGCTTG-GGCAAGAGTAGTACTAGGAT-GGTGACCTCCT-GGAAGGCCT
* * *
33182557 CGTGTTGCACCTCTCCAATTTTATTTCTTATAAAGTTTTTTTTAGTTAAATTTTCTACACGTGGT
190 CGTGTTGCACCCCTCCAATTTTATTTCATATAAAG-TTTTTTTAGTT-GATTTTCTACACGTGGT
*
33182622 GTAACTAAATAGTAATTTGCGTTTTG
253 GTAACTAATTAGTAATTTGCGTTTTG
*
33182648 CGAAATAAATAATTTGAAACGTTATTTTTTCGAATTTGCATTCAAATTCGAGACGCAAGTGCGAT
1 CG---T---T-ATTTG----G--------TCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGAT
* ** * * *
33182713 AGGGGGCAGCCTTTATATAAATAGATTGTGGAAGAGTTGACGGGTGTGATCATAACAGCAGTAAT
47 A-AGGGCAGCCTTTATATAAATAGATTG-CAAAGAGTTGACGGGTGCGATCATACCAGCACTAAT
* * * * *
33182778 GCACAGGATCCCATCAGAACTCCGTAGTTAAGCGTGCTTGTG-AGATAGTAGTACAAGGATGAGT
110 GCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCA-AGAGTAGTACTAGGATG-GT
* * *
33182842 GACCTTCCTGGGAGGTCCTCATGTTGCAACCCTCCAATTTTATTTCATATAAAGTTTTTTTAGTT
173 GACC-TCCTGGAAGG-CCTCGTGTTGCACCCCTCCAATTTTATTTCATATAAAGTTTTTTTAGTT
*
33182907 GAATTTTCTACACGTGGTGAAACTAATTAGTAATTTGCGTTTTG
236 G-ATTTTCTACACGTGGTGTAACTAATTAGTAATTTGCGTTTTG
*
33182951 CGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCCCAAGTGCGATAAGGGCCAGCCTTTATATA
1 CGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGG-CAGCCTTTATATA
* * ** * ** *
33183016 AATAAATTGCAAAGAGTTAACGGGTGCGGCCATACCAACACTAATGCACCGGATCATATCAAAAC
65 AATAGATTGCAAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAAC
* * * *
33183081 TCCACAGTTAAGCATGCTTGGGCAAGAGTCGTACTAGGATGGCTGACCTCCTGTAAAGGCCTCGT
130 TCCGCAGTTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGG-TGACCTCCTG-GAAGGCCTCGT
* *
33183146 GTTGCACCCCTCCCATTTTATTTCATATAAAGTTTTTTTAGTTGATTTTTCTAAACGTGGTGTAA
193 GTTGCACCCCTCCAATTTTATTTCATATAAAGTTTTTTTAGTTGA-TTTTCTACACGTGGTGTAA
*
33183211 CTAATTAGTTATTTGCGTTTTG
257 CTAATTAGTAATTTGCGTTTTG
* *
33183233 CGTTATTTGGTCAAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAAGGGTAGCCTTTATATA
1 CGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGAT-AAGGGCAGCCTTTATATA
* ** *
33183298 AATAGATTGCACAAGAGTTGATGGGCT-CGATCATACCAGTGCTAATGTACCGGATCCCATCAGA
65 AATAGATTGCA-AAGAGTTGACGGG-TGCGATCATACCAGCACTAATGCACCGGATCCCATCAGA
* * * * * * * *
33183362 ACTCCGCAGTTACGTGTACTTGGGCGAGATTAGTACTAGGTTGGGTGACCTCCAGGGAAGTCCTC
128 ACTCCGCAGTTAAGCGTGCTTGGGCAAGAGTAGTACTAGGAT-GGTGACCTCC-TGGAAGGCCTC
* ** * *
33183427 GTATTGCACCCCTCCTGTTTTATTTCATATAAACTTCTTTTTCGTTGCATTTTCTACACGTGGTG
191 GTGTTGCACCCCTCCAATTTTATTTCATATAAAGTT-TTTTTAGTTG-ATTTTCTACACGTGGTG
33183492 TAACTAATTA
254 TAACTAATTA
33183502 CTTATTTTCA
Statistics
Matches: 724, Mismatches: 91, Indels: 78
0.81 0.10 0.09
Matches are distributed among these distances:
281 1 0.00
282 157 0.22
283 210 0.29
284 97 0.13
285 1 0.00
287 1 0.00
290 1 0.00
291 5 0.01
292 1 0.00
295 1 0.00
296 5 0.01
297 1 0.00
300 1 0.00
302 2 0.00
303 201 0.28
304 39 0.05
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.33
Consensus pattern (278 bp):
CGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGCAGCCTTTATATAA
ATAGATTGCAAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACT
CCGCAGTTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGTGACCTCCTGGAAGGCCTCGTGTT
GCACCCCTCCAATTTTATTTCATATAAAGTTTTTTTAGTTGATTTTCTACACGTGGTGTAACTAA
TTAGTAATTTGCGTTTTG
Found at i:33183746 original size:193 final size:195
Alignment explanation
Indices: 33183380--33183748 Score: 485
Period size: 193 Copynumber: 1.9 Consensus size: 195
33183370 GTTACGTGTA
* **
33183380 CTTGGGCGAGATTAGTACTAGGTTGGGTGACCTCCAGGGAAGTCCTCGTATTGCACCCCTCCTGT
1 CTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCAGGGAAGTCCTCGTATTGCACCCCTCCCAT
* * * *
33183445 TTTATTTCATATAAACTTCTTTTTCGTTGCATTTTCTACACGTGGTGTAACTAATTACTTATTTT
66 TTTACTTCATATAAACTTCTTTTTCGTAGAATTTTCTAAACGTGGTGTAACTAATTACTTATTTT
* *
33183510 CATTTTACGAAAAAAATAATTTAAAACATTATTTGGCCGAATTTGCGCTAGAGTAGTTAAGCGTG
131 AATTTTACGAAAAAAATAATTTAAAACATTATTTGGACGAATTTGCGCTAGAGTAGTTAAGCGTG
* *
33183575 CTTGGGCGAGAGTAGTACTAGGATT-GGTGACC-CCTGGGAAGTCCTCGTGTTGCACCCCTCCCA
1 CTTGGGCGAGAGTAGTACTAGG-TTGGGTGACCTCCAGGGAAGTCCTCGTATTGCACCCCTCCCA
** * * * *
33183638 TTTTACTTCATATAATGTT-TTTTTAC-TAGAATTTTCTAAACGTGGTTTAGCTAATTAGTTTTT
65 TTTTACTTCATATAAACTTCTTTTT-CGTAGAATTTTCTAAACGTGGTGTAACTAATTACTTATT
** * * * *
33183701 TTAATTTTGTGAAATAAATAATTTGAAACGTTCTTTGGACGAATTTGC
129 TTAATTTTACGAAAAAAATAATTTAAAACATTATTTGGACGAATTTGC
33183749 ATTCAAATTC
Statistics
Matches: 149, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
193 75 0.50
194 44 0.30
195 28 0.19
196 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.38
Consensus pattern (195 bp):
CTTGGGCGAGAGTAGTACTAGGTTGGGTGACCTCCAGGGAAGTCCTCGTATTGCACCCCTCCCAT
TTTACTTCATATAAACTTCTTTTTCGTAGAATTTTCTAAACGTGGTGTAACTAATTACTTATTTT
AATTTTACGAAAAAAATAATTTAAAACATTATTTGGACGAATTTGCGCTAGAGTAGTTAAGCGTG
Found at i:33184280 original size:265 final size:276
Alignment explanation
Indices: 33183791--33185145 Score: 1030
Period size: 285 Copynumber: 4.9 Consensus size: 276
33183781 TAGGGTTTAG
* *
33183791 ATAAATAGATTGTGTAAGAGTTGACGGGTGTAATCATACCAGCAGTAATGCATAGGATCCCATCA
1 ATAAATAGATTGTGTAAGAGTTGACGGGTGTGATCATACCAGCAGTAATGCACAGGATCCCATCA
* * * ** * ** *
33183856 GAACTCCGTAGTTAAGGGTGCTTGCGGGATAATAGTATTATGATAAGTGACCTT-CTGGGAAGTC
66 GAACTCCGTAGTTAAGCGTGCTTGTGAGATAATAGTACAAGGATGGGTGACCTTCCTGGGAGGTC
*
33183920 CTCGTGTTGC-ACCTCTCCAATTTTATTTCATATAAAGTTCTTTTTTAGTTAAATTTTCTACACG
131 CTCGTGTTACAACC-CTCCAATTTTATTTCATATAAAGTT-TTTTTTAGTTAAATTTTCTACACG
* * * ** ****
33183984 TGGTGTAACAAAATAGTAATTTGCGTTTTGCG-AAATAAAT-AATTTG-AAA-CGTTA-TTTTGT
194 TGGTGAAACTAATTAGTAATTTGCGTTTTGCGTAAATAAATCAATTTGCAAATCGAGACGCAAGT
**
33184044 -CGA-AT-TTA-CATT-C
259 GCGATATGGCACCATTAC
* * * *
33184057 A-AATTCGGTTGTGTAAGAGTTGACGGGTGTGATCATACCAGCAGTAATGCACAGGATCGCATCA
1 ATAAATAGATTGTGTAAGAGTTGACGGGTGTGATCATACCAGCAGTAATGCACAGGATCCCATCA
**
33184121 GAACTCCGTAGTTAAGCGTGCTTGTGAGATTTTAGTACAAGGATGGGTGACCTTCCTGGGAGGTC
66 GAACTCCGTAGTTAAGCGTGCTTGTGAGATAATAGTACAAGGATGGGTGACCTTCCTGGGAGGTC
* *
33184186 CTCGTGTTTCAACCCTCCAATTTTATTTCATATAAAGTTTTTTTTAGTTGAATTTTCTACACGTG
131 CTCGTGTTACAACCCTCCAATTTTATTTCATATAAAGTTTTTTTTAGTTAAATTTTCTACACGTG
* * * ***
33184251 GTGAAACTAATTAGTAATTTGCATTTTGCGTTATTTGGTCGAATTTGCATTCAAATTCGAGACGC
196 GTGAAACTAATTAGTAATTTGCGTTTTGCGTAAATAAATC-AATTTG----CAAA-TCGAGACGC
*
33184316 AAGTGCGATATGGGGCAGCCTTTAC
255 AAGTGCGATAT--GGCA-CCATTAC
*
33184341 ATAAATAGATTGTGTAAGAGTTGACGGGTGTGATCATACCAGCAGTAATGCACAGGGTCCCATCA
1 ATAAATAGATTGTGTAAGAGTTGACGGGTGTGATCATACCAGCAGTAATGCACAGGATCCCATCA
*
33184406 GAACTCCGTAGTTAAGCGTGCTTGTGAGATAGTAGTACAAGGATGGGTGACCTTCCTGGGAGGTC
66 GAACTCCGTAGTTAAGCGTGCTTGTGAGATAATAGTACAAGGATGGGTGACCTTCCTGGGAGGTC
* * *
33184471 CTTGTGTTAGAACCCTCCAATTTTATTTCATATAAAGTTTTTTTTAGTTAAATTTTCTACATGTG
131 CTCGTGTTACAACCCTCCAATTTTATTTCATATAAAGTTTTTTTTAGTTAAATTTTCTACACGTG
* * * *** *
33184536 GTGAAACTAATTAGTAATTTGCGTTTTACGTTATTTGGTCGAATTTGCATTAAAAATCGAGGCGC
196 GTGAAACTAATTAGTAATTTGCGTTTTGCGTAAATAAATC-AATTTGC-----AAATCGAGACGC
* * *
33184601 AAGTGCGATAAGGGGCAGCCTTTAT
255 AAGTGCGAT-A-TGGCA-CCATTAC
* * * * * * * * * **
33184626 ATAAATAAATTGCGCAAGAGTTAACGGGTGCGACCATACCAACACTAACGCACCA-GATCATATC
1 ATAAATAGATTGTGTAAGAGTTGACGGGTGTGATCATACCAGCAGTAATGCA-CAGGATCCCATC
* ** * * * * * * * * **
33184690 AAAACTCCACAGTTAGGCATGCTTGGGCA-AGAGTCGTACTAGGATGGCTGACC-TCCTGTAAAG
65 AGAACTCCGTAGTTAAGCGTGCTTGTG-AGATAATAGTACAAGGATGGGTGACCTTCCTG-GGAG
* * * * * * *
33184753 G-CCTCGTGTTGCACCCCTCCCATTTTACTTCATATAAAG-TTTTTTTAGTTGATTTTTCTAAAC
128 GTCCTCGTGTTACAACCCTCCAATTTTATTTCATATAAAGTTTTTTTTAGTTAAATTTTCTACAC
* * * * * *** *
33184816 GTGGTGTAACTAATTAGTTATTTGCGTTTTGTGTTATTTGGTCGAATTTGCATTCAAATTCGAGG
193 GTGGTGAAACTAATTAGTAATTTGCGTTTTGCGTAAATAAATC-AATTTG----CAAA-TCGAGA
* * * *
33184881 CGCAAGTGCGATAAAGGGTAGCCTTTAT
252 CGCAAGTGCGAT--ATGGCA-CCATTAC
* * * * * * * *
33184909 ATAAATAGATTGCGCAAGAGTTGATGGGCT-CGATCATACCAG-TGCTAATGTACCGGATCCCTT
1 ATAAATAGATTGTGTAAGAGTTGACGGG-TGTGATCATACCAGCAG-TAATGCACAGGATCCCAT
* * * * * * * * * * *
33184972 CAGAACTTCGCAGTTAAGTGTACTTGGGCGAGATTAGTACTAGGTTGGGTGACC-T-CTAGGGAA
64 CAGAACTCCGTAGTTAAGCGTGCTTGTGAGATAATAGTACAAGGATGGGTGACCTTCCT-GGGAG
* * * ** * * * **
33185035 GTCCTCGTATTGCACCCCTCCTGTTTTATTTCATATAAACTTGTTTTTCGTTGCATTTTCTACAC
128 GTCCTCGTGTTACAACCCTCCAATTTTATTTCATATAAAGTTTTTTTTAGTTAAATTTTCTACAC
* * * * * * *
33185100 GTGGTGTATCTAATTACTTATTTTCATTTTACG-AAATAAAT-AATTT
193 GTGGTGAAACTAATTAGTAATTTGCGTTTTGCGTAAATAAATCAATTT
33185146 AAAACATTAT
Statistics
Matches: 902, Mismatches: 142, Indels: 75
0.81 0.13 0.07
Matches are distributed among these distances:
265 152 0.17
266 47 0.05
267 3 0.00
268 6 0.01
273 3 0.00
275 3 0.00
276 2 0.00
277 3 0.00
278 2 0.00
281 7 0.01
282 8 0.01
283 223 0.25
284 88 0.10
285 347 0.38
286 7 0.01
287 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (276 bp):
ATAAATAGATTGTGTAAGAGTTGACGGGTGTGATCATACCAGCAGTAATGCACAGGATCCCATCA
GAACTCCGTAGTTAAGCGTGCTTGTGAGATAATAGTACAAGGATGGGTGACCTTCCTGGGAGGTC
CTCGTGTTACAACCCTCCAATTTTATTTCATATAAAGTTTTTTTTAGTTAAATTTTCTACACGTG
GTGAAACTAATTAGTAATTTGCGTTTTGCGTAAATAAATCAATTTGCAAATCGAGACGCAAGTGC
GATATGGCACCATTAC
Found at i:33184575 original size:285 final size:284
Alignment explanation
Indices: 33184071--33185115 Score: 1278
Period size: 285 Copynumber: 3.7 Consensus size: 284
33184061 TCGGTTGTGT
* * *
33184071 AAGAGTTGACGGGTGTGATCATACCAGCAGTAATGCACAGGATCGCATCAGAACTCCGTAGTTAA
1 AAGAGTTGACGGGTGCGATCATACCAGCAGTAATGCACAGGATCCCATCAGAACTCCGCAGTTAA
* *** *
33184136 GCGTGCTTGTGAGATTTTAGTACAAGGATGGGTGACCTTCCTGGGAGGTCCTCGTGTTTCAACCC
66 GCGTGCTTGGGAGAGAGTAGTACAAGGATGGGTGACC-TCCTGGGAGGTCCTCGTGTTGCAACCC
33184201 TCCAATTTTATTTCATATAAAGTTTTTTTTAGTTGAATTTTCTACACGTGGTGAAACTAATTAGT
130 TCCAATTTTATTTCATATAAAGTTTTTTTTAGTTGAATTTTCTACACGTGGTGAAACTAATTAGT
* * *
33184266 AATTTGCATTTTGCGTTATTTGGTCGAATTTGCATTCAAATTCGAGACGCAAGTGCGATATGGGG
195 AATTTGCGTTTTGCGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGG
* * *
33184331 CAGCCTTTACATAAATAGATTGTGT
260 CAGCCTTTATATAAATAGATTGCGC
* * *
33184356 AAGAGTTGACGGGTGTGATCATACCAGCAGTAATGCACAGGGTCCCATCAGAACTCCGTAGTTAA
1 AAGAGTTGACGGGTGCGATCATACCAGCAGTAATGCACAGGATCCCATCAGAACTCCGCAGTTAA
* * *
33184421 GCGTGCTTGTGAGATAGTAGTACAAGGATGGGTGACCTTCCTGGGAGGTCCTTGTGTTAG-AACC
66 GCGTGCTTGGGAGAGAGTAGTACAAGGATGGGTGACC-TCCTGGGAGGTCCTCGTGTT-GCAACC
* *
33184485 CTCCAATTTTATTTCATATAAAGTTTTTTTTAGTTAAATTTTCTACATGTGGTGAAACTAATTAG
129 CTCCAATTTTATTTCATATAAAGTTTTTTTTAGTTGAATTTTCTACACGTGGTGAAACTAATTAG
* * *
33184550 TAATTTGCGTTTTACGTTATTTGGTCGAATTTGCATTAAAAATCGAGGCGCAAGTGCGATAAGGG
194 TAATTTGCGTTTTGCGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGG
*
33184615 GCAGCCTTTATATAAATAAATTGCGC
259 GCAGCCTTTATATAAATAGATTGCGC
* * * * * ** * *
33184641 AAGAGTTAACGGGTGCGACCATACCAACACTAACGCACCA-GATCATATCAAAACTCCACAGTTA
1 AAGAGTTGACGGGTGCGATCATACCAGCAGTAATGCA-CAGGATCCCATCAGAACTCCGCAGTTA
* * * * * ** *
33184705 GGCATGCTTGGGCA-AGAGTCGTACTAGGATGGCTGACCTCCTGTAAAGG-CCTCGTGTTGCACC
65 AGCGTGCTTGGG-AGAGAGTAGTACAAGGATGGGTGACCTCCTG-GGAGGTCCTCGTGTTGCAAC
* * * * *
33184768 CCTCCCATTTTACTTCATATAAAG-TTTTTTTAGTTGATTTTTCTAAACGTGGTGTAACTAATTA
128 CCTCCAATTTTATTTCATATAAAGTTTTTTTTAGTTGAATTTTCTACACGTGGTGAAACTAATTA
* * *
33184832 GTTATTTGCGTTTTGTGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAAG
193 GTAATTTGCGTTTTGCGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGG
*
33184897 GGTAGCCTTTATATAAATAGATTGCGC
258 GGCAGCCTTTATATAAATAGATTGCGC
* * * * * *
33184924 AAGAGTTGATGGGCT-CGATCATACCAG-TGCTAATGTACCGGATCCCTTCAGAACTTCGCAGTT
1 AAGAGTTGACGGG-TGCGATCATACCAGCAG-TAATGCACAGGATCCCATCAGAACTCCGCAGTT
* * * * * * * * *
33184987 AAGTGTACTTGGGCGAGATTAGTACTAGGTTGGGTGACCT-CTAGGGAAGTCCTCGTATTGCACC
64 AAGCGTGCTTGGGAGAGAGTAGTACAAGGATGGGTGACCTCCT-GGGAGGTCCTCGTGTTGCAAC
** * * * * * *
33185051 CCTCCTGTTTTATTTCATATAAACTTGTTTTTCGTTGCATTTTCTACACGTGGTGTATCTAATTA
128 CCTCCAATTTTATTTCATATAAAGTTTTTTTTAGTTGAATTTTCTACACGTGGTGAAACTAATTA
33185116 CTTATTTTCA
Statistics
Matches: 654, Mismatches: 94, Indels: 25
0.85 0.12 0.03
Matches are distributed among these distances:
282 5 0.01
283 227 0.35
284 72 0.11
285 347 0.53
286 3 0.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (284 bp):
AAGAGTTGACGGGTGCGATCATACCAGCAGTAATGCACAGGATCCCATCAGAACTCCGCAGTTAA
GCGTGCTTGGGAGAGAGTAGTACAAGGATGGGTGACCTCCTGGGAGGTCCTCGTGTTGCAACCCT
CCAATTTTATTTCATATAAAGTTTTTTTTAGTTGAATTTTCTACACGTGGTGAAACTAATTAGTA
ATTTGCGTTTTGCGTTATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGC
AGCCTTTATATAAATAGATTGCGC
Found at i:33186348 original size:27 final size:26
Alignment explanation
Indices: 33186314--33186748 Score: 475
Period size: 27 Copynumber: 16.2 Consensus size: 26
33186304 CATTTCATCT
** *
33186314 CCTA-GGGGTATAACAGTTATTTTAC
1 CCTATGGGGTATTTCAGTCATTTTAC
33186339 CCTATTGGGGTATTTCAGTCATTTTAC
1 CCTA-TGGGGTATTTCAGTCATTTTAC
* *
33186366 CGTATGGGGGTATTTCAGTCATTCTAC
1 CCTAT-GGGGTATTTCAGTCATTTTAC
*
33186393 CTTATGGGGGTATTTCAGTCATTTTAC
1 CCTAT-GGGGTATTTCAGTCATTTTAC
*
33186420 CCTATGGGAGTATTTC-GTTCATTTTAT
1 CCTATGGG-GTATTTCAG-TCATTTTAC
*
33186447 CCTATGAGGGTATTTTAGTCATTTTAC
1 CCTATG-GGGTATTTCAGTCATTTTAC
*
33186474 CCTATGAGGGTATTTTAGTCATTTTAC
1 CCTATG-GGGTATTTCAGTCATTTTAC
*
33186501 CCTATAGGGGTATTTCGGTCATTTTAC
1 CCTAT-GGGGTATTTCAGTCATTTTAC
*
33186528 CCTATGAGGGTAATTTGA-TCATTTTAC
1 CCTATG-GGGT-ATTTCAGTCATTTTAC
33186555 CCTATGGGGGTATTTCAGTCATTTTAC
1 CCTAT-GGGGTATTTCAGTCATTTTAC
33186582 CCTATGAGGGTATTTC-GATCATTTTAC
1 CCTATG-GGGTATTTCAG-TCATTTTAC
* * * *
33186609 CTTATGAGGTTATTTCGGTCATTCTAC
1 CCTATG-GGGTATTTCAGTCATTTTAC
* *
33186636 CCTATAGGGGTATTTCGGTCATTCTAC
1 CCTAT-GGGGTATTTCAGTCATTTTAC
** *
33186663 CCTATAGGGGTATTTTTGTCATTTTAT
1 CCTAT-GGGGTATTTCAGTCATTTTAC
*
33186690 CCTATGGGGGTATTTCGGTCATTTTAC
1 CCTAT-GGGGTATTTCAGTCATTTTAC
33186717 CCTATGGGGGTATTTC-GATCATTTTAC
1 CCTAT-GGGGTATTTCAG-TCATTTTAC
33186744 CCTAT
1 CCTAT
33186749 CTTGAAGTCT
Statistics
Matches: 364, Mismatches: 29, Indels: 32
0.86 0.07 0.08
Matches are distributed among these distances:
25 4 0.01
26 14 0.04
27 335 0.92
28 11 0.03
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.42
Consensus pattern (26 bp):
CCTATGGGGTATTTCAGTCATTTTAC
Found at i:33195546 original size:18 final size:18
Alignment explanation
Indices: 33195518--33195561 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
33195508 TTTGGACCGA
*
33195518 GTGGG-CCACATAGGCGT
1 GTGGGCCCACATAGGCAT
*
33195535 GTGGGCCCACATGGGCAT
1 GTGGGCCCACATAGGCAT
*
33195553 GTGAGCCCA
1 GTGGGCCCA
33195562 TCTTTACTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.18, C:0.27, G:0.39, T:0.16
Consensus pattern (18 bp):
GTGGGCCCACATAGGCAT
Found at i:33202669 original size:21 final size:21
Alignment explanation
Indices: 33202643--33202691 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
33202633 TTAGACTTGG
* *
33202643 TCGTGTGGCTATCCCACAAGC
1 TCGTGTGACTACCCCACAAGC
*
33202664 TCGTGTGACTACCCCACACGC
1 TCGTGTGACTACCCCACAAGC
33202685 TCGTGTG
1 TCGTGTG
33202692 CTGTCTTGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.16, C:0.35, G:0.24, T:0.24
Consensus pattern (21 bp):
TCGTGTGACTACCCCACAAGC
Found at i:33216973 original size:18 final size:19
Alignment explanation
Indices: 33216947--33216982 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
33216937 AAAATAACCT
*
33216947 AAGTGAAAA-CTAAGAATG
1 AAGTAAAAACCTAAGAATG
33216965 AAGTAAAAACCTAAGAAT
1 AAGTAAAAACCTAAGAAT
33216983 AATTTTGTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.08, G:0.17, T:0.17
Consensus pattern (19 bp):
AAGTAAAAACCTAAGAATG
Found at i:33218337 original size:41 final size:41
Alignment explanation
Indices: 33218278--33218481 Score: 167
Period size: 41 Copynumber: 5.0 Consensus size: 41
33218268 AGAATGATGA
*
33218278 TGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
1 TGAATTACACATACGTGCCCCTATTTGTACTTCGGTACCCC
** * * *
33218319 TGAATTACACATTTGTGCCCCTGTTTGTACTTTGGTA-CCT
1 TGAATTACACATACGTGCCCCTATTTGTACTTCGGTACCCC
** ** * * *
33218359 TCGAATTGTACATACGTGCTTCTGTTTGTACTTTGGTACTCC
1 T-GAATTACACATACGTGCCCCTATTTGTACTTCGGTACCCC
* * * *** *
33218401 TGAATTGCACATACGTGCCTCTTTTTGTACTTTAATACCCA
1 TGAATTACACATACGTGCCCCTATTTGTACTTCGGTACCCC
*** * *
33218442 TGAATCGTACATACGTTCCCCTATTTGTACTTTGGTACCC
1 TGAATTACACATACGTGCCCCTATTTGTACTTCGGTACCC
33218482 TTGGATGTAC
Statistics
Matches: 133, Mismatches: 28, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
40 3 0.02
41 128 0.96
42 2 0.02
ACGTcount: A:0.20, C:0.25, G:0.16, T:0.39
Consensus pattern (41 bp):
TGAATTACACATACGTGCCCCTATTTGTACTTCGGTACCCC
Found at i:33218372 original size:82 final size:82
Alignment explanation
Indices: 33218277--33218481 Score: 250
Period size: 82 Copynumber: 2.5 Consensus size: 82
33218267 AAGAATGATG
* * **
33218277 ATGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTGAATTACACATTTGTGCCCCTG
1 ATGAATTGTACATACGTGCCCCTATTTGTACTTTGGTACCCCTGAATTACACATACGTGCCCCTG
**
33218342 TTTGTACTTTGGTA-CC
66 TTTGTACTTTAATACCC
* ** * * * *
33218358 TTCGAATTGTACATACGTGCTTCTGTTTGTACTTTGGTACTCCTGAATTGCACATACGTGCCTCT
1 AT-GAATTGTACATACGTGCCCCTATTTGTACTTTGGTACCCCTGAATTACACATACGTGCCCCT
*
33218423 TTTTGTACTTTAATACCC
65 GTTTGTACTTTAATACCC
* *
33218441 ATGAATCGTACATACGTTCCCCTATTTGTACTTTGGTACCC
1 ATGAATTGTACATACGTGCCCCTATTTGTACTTTGGTACCC
33218482 TTGGATGTAC
Statistics
Matches: 101, Mismatches: 21, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
81 1 0.01
82 97 0.96
83 3 0.03
ACGTcount: A:0.20, C:0.25, G:0.16, T:0.39
Consensus pattern (82 bp):
ATGAATTGTACATACGTGCCCCTATTTGTACTTTGGTACCCCTGAATTACACATACGTGCCCCTG
TTTGTACTTTAATACCC
Found at i:33221615 original size:9 final size:9
Alignment explanation
Indices: 33221601--33221625 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
33221591 ATGTCGCGAC
33221601 ATCGCTTTG
1 ATCGCTTTG
33221610 ATCGCTTTG
1 ATCGCTTTG
33221619 ATCGCTT
1 ATCGCTT
33221626 CCAATGATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.24, G:0.20, T:0.44
Consensus pattern (9 bp):
ATCGCTTTG
Found at i:33223438 original size:15 final size:15
Alignment explanation
Indices: 33223414--33223443 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
33223404 ATTTATATAT
33223414 AAAAGAGTGGTGTCA
1 AAAAGAGTGGTGTCA
*
33223429 AAAAGTGTGGTGTCA
1 AAAAGAGTGGTGTCA
33223444 GAGAGAGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.33, T:0.23
Consensus pattern (15 bp):
AAAAGAGTGGTGTCA
Found at i:33240161 original size:16 final size:15
Alignment explanation
Indices: 33240129--33240167 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
33240119 TTATAATAAC
33240129 TAATATATAATTATAT
1 TAAT-TATAATTATAT
*
33240145 TTATTATAATATATAT
1 TAATTATAAT-TATAT
33240161 TAATTAT
1 TAATTAT
33240168 TTTCAACTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TAATTATAATTATAT
Found at i:33245859 original size:24 final size:24
Alignment explanation
Indices: 33245829--33245973 Score: 123
Period size: 24 Copynumber: 6.0 Consensus size: 24
33245819 CAAACCAATT
*
33245829 ATCGGGAAGCTCATGCGAGCCATA
1 ATCGGGAAGCTCATGAGAGCCATA
* * *
33245853 AGCGGGAAGCTCAAGAGAGCCAAA
1 ATCGGGAAGCTCATGAGAGCCATA
* * *
33245877 TATCGGGAAACTC-CGAAGAGCTAGTA
1 -ATCGGGAAGCTCATG-AGAGCCA-TA
* * * *
33245903 ATTGAGAAGTTCATAAGAGCCATA
1 ATCGGGAAGCTCATGAGAGCCATA
*
33245927 ATCGGGAAGCTCATGCGAGCCA-A
1 ATCGGGAAGCTCATGAGAGCCATA
*
33245950 TATCGGGAAGCTCGTGAGAGCCAT
1 -ATCGGGAAGCTCATGAGAGCCAT
33245974 GTAGCGAGAT
Statistics
Matches: 92, Mismatches: 23, Indels: 11
0.73 0.18 0.09
Matches are distributed among these distances:
23 1 0.01
24 60 0.65
25 30 0.33
26 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.29, T:0.17
Consensus pattern (24 bp):
ATCGGGAAGCTCATGAGAGCCATA
Found at i:33255078 original size:12 final size:12
Alignment explanation
Indices: 33255055--33255090 Score: 63
Period size: 12 Copynumber: 2.9 Consensus size: 12
33255045 AAATGAATTG
33255055 ATTTCTCATTTTC
1 ATTTC-CATTTTC
33255068 ATTTCCATTTTC
1 ATTTCCATTTTC
33255080 ATTTCCATTTT
1 ATTTCCATTTT
33255091 GAGAAAACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 18 0.78
13 5 0.22
ACGTcount: A:0.17, C:0.22, G:0.00, T:0.61
Consensus pattern (12 bp):
ATTTCCATTTTC
Found at i:33270949 original size:12 final size:13
Alignment explanation
Indices: 33270916--33270956 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
33270906 GGGGATGCAA
33270916 AAAGGTAT-TTTG
1 AAAGGTATATTTG
33270928 AAAGGCTATATTTG
1 AAAGG-TATATTTG
*
33270942 AAA-GTATATTAG
1 AAAGGTATATTTG
33270954 AAA
1 AAA
33270957 CCATTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
12 15 0.58
13 4 0.15
14 7 0.27
ACGTcount: A:0.44, C:0.02, G:0.20, T:0.34
Consensus pattern (13 bp):
AAAGGTATATTTG
Found at i:33271709 original size:18 final size:18
Alignment explanation
Indices: 33271657--33271735 Score: 70
Period size: 18 Copynumber: 4.4 Consensus size: 18
33271647 ACAATTTGAA
* **
33271657 AAATTAATACAATTCGTC
1 AAATTAATATAATTCACC
* * *
33271675 ATATTAATACAAATCACC
1 AAATTAATATAATTCACC
*
33271693 AAATTAATATAGTTCACC
1 AAATTAATATAATTCACC
33271711 ATAA-TAATATAATTCACC
1 A-AATTAATATAATTCACC
*
33271729 AAGTTAA
1 AAATTAA
33271736 CAGAGTTCAA
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
17 1 0.02
18 46 0.94
19 2 0.04
ACGTcount: A:0.48, C:0.16, G:0.04, T:0.32
Consensus pattern (18 bp):
AAATTAATATAATTCACC
Found at i:33271719 original size:36 final size:36
Alignment explanation
Indices: 33271674--33271744 Score: 88
Period size: 36 Copynumber: 2.0 Consensus size: 36
33271664 TACAATTCGT
* * *
33271674 CATATTAATACAAATCACCAAATTAATATAGTTCAC
1 CATAATAATACAAATCACCAAATTAACAGAGTTCAC
* * *
33271710 CATAATAATATAATTCACCAAGTTAACAGAGTTCA
1 CATAATAATACAAATCACCAAATTAACAGAGTTCA
33271745 AAATATAACA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.46, C:0.18, G:0.06, T:0.30
Consensus pattern (36 bp):
CATAATAATACAAATCACCAAATTAACAGAGTTCAC
Found at i:33272081 original size:22 final size:22
Alignment explanation
Indices: 33272053--33272108 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
33272043 AAATATATAT
*
33272053 TATATATAATAAGACCCATGCA
1 TATATATAATAAGACCCACGCA
*
33272075 TATATATAGTAAGACCCACGCA
1 TATATATAATAAGACCCACGCA
33272097 TATAATATAATA
1 TAT-ATATAATA
33272109 TGTGTATAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 23 0.77
23 7 0.23
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.29
Consensus pattern (22 bp):
TATATATAATAAGACCCACGCA
Found at i:33273663 original size:24 final size:24
Alignment explanation
Indices: 33273627--33273676 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
33273617 CGAATAATCC
* *
33273627 AATTATTTTATTATTACCATTATT
1 AATTAATTAATTATTACCATTATT
*
33273651 AATTAATTAATTATTACTATTATT
1 AATTAATTAATTATTACCATTATT
33273675 AA
1 AA
33273677 CTGATAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (24 bp):
AATTAATTAATTATTACCATTATT
Found at i:33273686 original size:24 final size:24
Alignment explanation
Indices: 33273636--33273689 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
33273626 CAATTATTTT
* *
33273636 ATTATTACCATTATTAATTAATTA
1 ATTATTACCATTATTAACTAATAA
* *
33273660 ATTATTACTATTATTAACTGATAA
1 ATTATTACCATTATTAACTAATAA
33273684 ATTATT
1 ATTATT
33273690 TTCTCCTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.50
Consensus pattern (24 bp):
ATTATTACCATTATTAACTAATAA
Found at i:33274736 original size:55 final size:55
Alignment explanation
Indices: 33274652--33274763 Score: 215
Period size: 55 Copynumber: 2.0 Consensus size: 55
33274642 GTCATATAGG
33274652 CACCTCAATCACAAACATCAAAGATACCTAAACATGTACACATTTAACCATTTAT
1 CACCTCAATCACAAACATCAAAGATACCTAAACATGTACACATTTAACCATTTAT
*
33274707 CACCTCAATCACAAACATCAAAGATACCTAAACATGTGCACATTTAACCATTTAT
1 CACCTCAATCACAAACATCAAAGATACCTAAACATGTACACATTTAACCATTTAT
33274762 CA
1 CA
33274764 ACTAACTTGT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.43, C:0.28, G:0.04, T:0.25
Consensus pattern (55 bp):
CACCTCAATCACAAACATCAAAGATACCTAAACATGTACACATTTAACCATTTAT
Found at i:33279196 original size:22 final size:21
Alignment explanation
Indices: 33279154--33279196 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
33279144 TTTTAGTGGC
*
33279154 TCAATTATGAATAGTTGGATT
1 TCAATTATGAATAGTTCGATT
*
33279175 TCAATTATGATTTAGTTCGATT
1 TCAATTATGA-ATAGTTCGATT
33279197 AGAACATGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.30, C:0.07, G:0.16, T:0.47
Consensus pattern (21 bp):
TCAATTATGAATAGTTCGATT
Found at i:33287115 original size:50 final size:50
Alignment explanation
Indices: 33286980--33287118 Score: 127
Period size: 50 Copynumber: 2.8 Consensus size: 50
33286970 NNNNNNNNNN
* * * * *
33286980 GATCTTACTTCCCTAGCGGTACAGTGGAACAGATTGAAGCTACGACGACG
1 GATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCCACAACGACG
** * * ** * *
33287030 GATCTTGTTTCCCAGACAATGCAAT-TAAAAGGATTGAAGCCACAACGACG
1 GATCTTACTTCCCTGGCGGTGCAGTGGAAAA-GATTGAAGCCACAACGACG
* *
33287080 GATCTTACTTCCCTGGCGGTGTAGTGGAATAGATTGAAG
1 GATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAG
33287119 TCATAATGGC
Statistics
Matches: 64, Mismatches: 23, Indels: 4
0.70 0.25 0.04
Matches are distributed among these distances:
49 3 0.05
50 58 0.91
51 3 0.05
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.24
Consensus pattern (50 bp):
GATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCCACAACGACG
Found at i:33287166 original size:100 final size:99
Alignment explanation
Indices: 33286980--33287168 Score: 220
Period size: 100 Copynumber: 1.9 Consensus size: 99
33286970 NNNNNNNNNN
*
33286980 GATCTTACTTCCCTAGCGGTACAGTGGAACAGATTGAAGCTACGACGACGGATCTTGTTTCCCAG
1 GATCTTACTTCCCTAGCGGTACAGTGGAACAGATTGAAGCTAC-ACGACGAATCTTGTTTCCCAG
*
33287045 ACAATGCAATTAAAAGGATTGAAGCCACAACGACG
65 ACAATGCAATTAAAAGAATTGAAGCCACAACGACG
* ** * * * *
33287080 GATCTTACTTCCCTGGCGGTGTAGTGGAATAGATTGAAGTCATA-ATGGCGAATCTTGTTTCCCC
1 GATCTTACTTCCCTAGCGGTACAGTGGAACAGATTGAAG-C-TACACGACGAATCTTGTTTCCCA
* * *
33287144 GATATTGCAGTTAAATA-AATTGAAG
64 GACAATGCAATTAAA-AGAATTGAAG
33287169 AAAATAATCC
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
100 70 0.95
101 2 0.03
102 2 0.03
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (99 bp):
GATCTTACTTCCCTAGCGGTACAGTGGAACAGATTGAAGCTACACGACGAATCTTGTTTCCCAGA
CAATGCAATTAAAAGAATTGAAGCCACAACGACG
Found at i:33296192 original size:22 final size:22
Alignment explanation
Indices: 33296167--33296213 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
33296157 TATACTTTTA
*
33296167 AATAATAACCTTATTATTATTG
1 AATAATAACCTTATTATCATTG
33296189 AATAATAACCTTATTATCATTG
1 AATAATAACCTTATTATCATTG
33296211 AAT
1 AAT
33296214 TGAGTTAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.43, C:0.11, G:0.04, T:0.43
Consensus pattern (22 bp):
AATAATAACCTTATTATCATTG
Found at i:33300120 original size:3 final size:3
Alignment explanation
Indices: 33300112--33300146 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
33300102 CTTGGCTGAA
33300112 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
33300147 AATTTGTTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:33300595 original size:27 final size:27
Alignment explanation
Indices: 33300561--33300614 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
33300551 AAACCTTTTT
*
33300561 ACTTTTCCCTCAAAACTTTTACTCCCC
1 ACTTTTCCCCCAAAACTTTTACTCCCC
33300588 ACTTTTCCCCCAAAACTTTTACTCCCC
1 ACTTTTCCCCCAAAACTTTTACTCCCC
33300615 TCCCCTCCCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.22, C:0.43, G:0.00, T:0.35
Consensus pattern (27 bp):
ACTTTTCCCCCAAAACTTTTACTCCCC
Found at i:33300623 original size:27 final size:27
Alignment explanation
Indices: 33300566--33300624 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
33300556 TTTTTACTTT
* ***
33300566 TCCCTCAAAACTTTTACTCCCCACTTT
1 TCCCCCAAAACTTTTACTCCCCACCCC
*
33300593 TCCCCCAAAACTTTTACTCCCCTCCCC
1 TCCCCCAAAACTTTTACTCCCCACCCC
33300620 TCCCC
1 TCCCC
33300625 TCCAACCCCC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.19, C:0.51, G:0.00, T:0.31
Consensus pattern (27 bp):
TCCCCCAAAACTTTTACTCCCCACCCC
Found at i:33304916 original size:33 final size:35
Alignment explanation
Indices: 33304854--33304935 Score: 118
Period size: 33 Copynumber: 2.4 Consensus size: 35
33304844 TTGTTCAAAA
33304854 AAATATTATTTTTCAAAATGTAAAATTTATATATG
1 AAATATTATTTTTCAAAATGTAAAATTTATATATG
33304889 AAATATTATTTTT-AAAAT-TAAAATTTATATA--
1 AAATATTATTTTTCAAAATGTAAAATTTATATATG
*
33304920 ATATATTATATTTTCA
1 AAATATTAT-TTTTCA
33304936 CATGTGTGAC
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
31 8 0.18
32 4 0.09
33 14 0.32
34 5 0.11
35 13 0.30
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (35 bp):
AAATATTATTTTTCAAAATGTAAAATTTATATATG
Found at i:33314821 original size:21 final size:21
Alignment explanation
Indices: 33314792--33314853 Score: 70
Period size: 21 Copynumber: 3.0 Consensus size: 21
33314782 AAAACACGCC
* *
33314792 AACAAAAGCTCGTGAGAGCTA
1 AACAGAAGCTCATGAGAGCTA
* *
33314813 AACAGAAGCTCATGAGAGTTG
1 AACAGAAGCTCATGAGAGCTA
* *
33314834 AACAGAAGGTCATTAGAGCT
1 AACAGAAGCTCATGAGAGCT
33314854 GATCCACCCA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.40, C:0.16, G:0.26, T:0.18
Consensus pattern (21 bp):
AACAGAAGCTCATGAGAGCTA
Found at i:33315183 original size:34 final size:34
Alignment explanation
Indices: 33315077--33315299 Score: 259
Period size: 35 Copynumber: 6.5 Consensus size: 34
33315067 TTCCAACAAT
*
33315077 AGATTCCCTGCAAGAAATGAT-TGTGAACATGAG
1 AGATTCCCTGCAAGAAATGATGTGTGAACAGGAG
* * * *
33315110 AGATTCCCTACAACAAAATAATGCGTGAACAGGAG
1 AGATTCCCTGCAA-GAAATGATGTGTGAACAGGAG
* *
33315145 AGATTCCCTGCAAGAAATGATGTGGGAAAAGGAG
1 AGATTCCCTGCAAGAAATGATGTGTGAACAGGAG
* * **
33315179 AGATTCCCTGCAACAAAATAATGCATGAACAGGAG
1 AGATTCCCTGCAA-GAAATGATGTGTGAACAGGAG
33315214 AGATTCCCTGCAAGAAATGATGTGTGAACAGGAG
1 AGATTCCCTGCAAGAAATGATGTGTGAACAGGAG
* * * *
33315248 AGATTCCCTGCAACAAAATAATGCGTGAACAGGAA
1 AGATTCCCTGCAA-GAAATGATGTGTGAACAGGAG
* *
33315283 ATATTCCCTACAAGAAA
1 AGATTCCCTGCAAGAAA
33315300 AGACAAGTGA
Statistics
Matches: 158, Mismatches: 28, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
33 12 0.08
34 68 0.43
35 78 0.49
ACGTcount: A:0.40, C:0.17, G:0.23, T:0.19
Consensus pattern (34 bp):
AGATTCCCTGCAAGAAATGATGTGTGAACAGGAG
Found at i:33315310 original size:69 final size:69
Alignment explanation
Indices: 33315077--33315299 Score: 367
Period size: 69 Copynumber: 3.2 Consensus size: 69
33315067 TTCCAACAAT
* *
33315077 AGATTCCCTGCAAGAAATGAT-TGTGAACATGAGAGATTCCCTACAACAAAATAATGCGTGAACA
1 AGATTCCCTGCAAGAAATGATGTGTGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACA
33315141 GGAG
66 GGAG
* * *
33315145 AGATTCCCTGCAAGAAATGATGTGGGAAAAGGAGAGATTCCCTGCAACAAAATAATGCATGAACA
1 AGATTCCCTGCAAGAAATGATGTGTGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACA
33315210 GGAG
66 GGAG
33315214 AGATTCCCTGCAAGAAATGATGTGTGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACA
1 AGATTCCCTGCAAGAAATGATGTGTGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACA
*
33315279 GGAA
66 GGAG
* *
33315283 ATATTCCCTACAAGAAA
1 AGATTCCCTGCAAGAAA
33315300 AGACAAGTGA
Statistics
Matches: 143, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
68 21 0.15
69 122 0.85
ACGTcount: A:0.40, C:0.17, G:0.23, T:0.19
Consensus pattern (69 bp):
AGATTCCCTGCAAGAAATGATGTGTGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACA
GGAG
Found at i:33323832 original size:34 final size:34
Alignment explanation
Indices: 33323789--33324035 Score: 307
Period size: 34 Copynumber: 7.2 Consensus size: 34
33323779 CAGGTCCAAA
* *
33323789 AAGAAATGATACATGAACAGGAGAGATTCCCT-C
1 AAGAAATGATGCGTGAACAGGAGAGATTCCCTGC
* *
33323822 TAAGAAATGATGTGTGAATAGGAGAGATTCCCTGC
1 -AAGAAATGATGCGTGAACAGGAGAGATTCCCTGC
* *
33323857 AACAAAATAATGCGTGAACAGGAGAGATTCCCTGC
1 AA-GAAATGATGCGTGAACAGGAGAGATTCCCTGC
*
33323892 AAGAAATGATGTGTGAACAGGAGAGATTCCCTGC
1 AAGAAATGATGCGTGAACAGGAGAGATTCCCTGC
* * *
33323926 AACAAAATAATACGTGAACAGGAGAGATTCCCTGC
1 AA-GAAATGATGCGTGAACAGGAGAGATTCCCTGC
* *
33323961 AAGAAATGATGTGTGAACAGGAGAGATTTCCTGC
1 AAGAAATGATGCGTGAACAGGAGAGATTCCCTGC
* * * *
33323995 AACAAAATAATGCGTGAACAGGAAATATTCCCTGC
1 AA-GAAATGATGCGTGAACAGGAGAGATTCCCTGC
33324030 AAGAAA
1 AAGAAA
33324036 AGACAAGTGA
Statistics
Matches: 182, Mismatches: 27, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
34 93 0.51
35 89 0.49
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20
Consensus pattern (34 bp):
AAGAAATGATGCGTGAACAGGAGAGATTCCCTGC
Found at i:33323881 original size:35 final size:34
Alignment explanation
Indices: 33323802--33324036 Score: 292
Period size: 35 Copynumber: 6.8 Consensus size: 34
33323792 AAATGATACA
* * *
33323802 TGAACAGGAGAGATTCCCT-CTAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGC-AAAAAATAATGCG
*
33323836 TGAATAGGAGAGATTCCCTGCAACAAAATAATGCG
1 TGAACAGGAGAGATTCCCTGCAA-AAAATAATGCG
* * *
33323871 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAAAAATAATGCG
*
33323905 TGAACAGGAGAGATTCCCTGCAACAAAATAATACG
1 TGAACAGGAGAGATTCCCTGCAA-AAAATAATGCG
* * *
33323940 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAAAAATAATGCG
*
33323974 TGAACAGGAGAGATTTCCTGCAACAAAATAATGCG
1 TGAACAGGAGAGATTCCCTGCAA-AAAATAATGCG
* *
33324009 TGAACAGGAAATATTCCCTGCAAGAAAA
1 TGAACAGGAGAGATTCCCTGCAA-AAAA
33324037 GACAAGTGAA
Statistics
Matches: 173, Mismatches: 24, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
34 80 0.46
35 93 0.54
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.20
Consensus pattern (34 bp):
TGAACAGGAGAGATTCCCTGCAAAAAATAATGCG
Found at i:33324046 original size:69 final size:69
Alignment explanation
Indices: 33323802--33324035 Score: 407
Period size: 69 Copynumber: 3.4 Consensus size: 69
33323792 AAATGATACA
*
33323802 TGAACAGGAGAGATTCCCT-CTAAGAAATGATGTGTGAATAGGAGAGATTCCCTGCAACAAAATA
1 TGAACAGGAGAGATTCCCTGC-AAGAAATGATGTGTGAACAGGAGAGATTCCCTGCAACAAAATA
33323866 ATGCG
65 ATGCG
33323871 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTGTGAACAGGAGAGATTCCCTGCAACAAAATAA
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTGTGAACAGGAGAGATTCCCTGCAACAAAATAA
*
33323936 TACG
66 TGCG
*
33323940 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTGTGAACAGGAGAGATTTCCTGCAACAAAATAA
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTGTGAACAGGAGAGATTCCCTGCAACAAAATAA
33324005 TGCG
66 TGCG
* *
33324009 TGAACAGGAAATATTCCCTGCAAGAAA
1 TGAACAGGAGAGATTCCCTGCAAGAAA
33324036 AGACAAGTGA
Statistics
Matches: 158, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
69 157 0.99
70 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.20
Consensus pattern (69 bp):
TGAACAGGAGAGATTCCCTGCAAGAAATGATGTGTGAACAGGAGAGATTCCCTGCAACAAAATAA
TGCG
Found at i:33324265 original size:18 final size:18
Alignment explanation
Indices: 33324242--33324297 Score: 75
Period size: 18 Copynumber: 3.3 Consensus size: 18
33324232 AAGTTTCTCA
33324242 AAGTTTCTCAAAACTTTT
1 AAGTTTCTCAAAACTTTT
*
33324260 AAGTTT-ACAAAA--TTT
1 AAGTTTCTCAAAACTTTT
33324275 -AGTTTCTCAAAACTTTT
1 AAGTTTCTCAAAACTTTT
33324292 AAGTTT
1 AAGTTT
33324298 ACAAAATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
14 5 0.16
15 8 0.25
17 8 0.25
18 11 0.34
ACGTcount: A:0.36, C:0.12, G:0.07, T:0.45
Consensus pattern (18 bp):
AAGTTTCTCAAAACTTTT
Found at i:33324280 original size:32 final size:32
Alignment explanation
Indices: 33324243--33324307 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
33324233 AGTTTCTCAA
33324243 AGTTTCTCAAAACTTTTAAGTTTACAAAATTT
1 AGTTTCTCAAAACTTTTAAGTTTACAAAATTT
33324275 AGTTTCTCAAAACTTTTAAGTTTACAAAATTT
1 AGTTTCTCAAAACTTTTAAGTTTACAAAATTT
33324307 A
1 A
33324308 ATTTTTAAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.43
Consensus pattern (32 bp):
AGTTTCTCAAAACTTTTAAGTTTACAAAATTT
Found at i:33324302 original size:17 final size:17
Alignment explanation
Indices: 33324250--33324303 Score: 69
Period size: 17 Copynumber: 3.3 Consensus size: 17
33324240 CAAAGTTTCT
33324250 CAAAACTTTTAAGTTTA
1 CAAAACTTTTAAGTTTA
*
33324267 CAAAA--TTT-AGTTTCT
1 CAAAACTTTTAAGTTT-A
33324282 CAAAACTTTTAAGTTTA
1 CAAAACTTTTAAGTTTA
33324299 CAAAA
1 CAAAA
33324304 TTTAATTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
14 5 0.16
15 8 0.26
17 13 0.42
18 5 0.16
ACGTcount: A:0.43, C:0.13, G:0.06, T:0.39
Consensus pattern (17 bp):
CAAAACTTTTAAGTTTA
Found at i:33324343 original size:13 final size:14
Alignment explanation
Indices: 33324325--33324359 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
33324315 AGTTTCCAAA
33324325 TTTTCAAAC-TAAG
1 TTTTCAAACTTAAG
33324338 TTTTCAAACTTAAG
1 TTTTCAAACTTAAG
33324352 TTTTCAAA
1 TTTTCAAA
33324360 TTACAAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.37, C:0.14, G:0.06, T:0.43
Consensus pattern (14 bp):
TTTTCAAACTTAAG
Found at i:33326670 original size:6 final size:6
Alignment explanation
Indices: 33326661--33326775 Score: 230
Period size: 6 Copynumber: 19.2 Consensus size: 6
33326651 AAATAATAAG
33326661 AATATT AATATT AATATT AATATT AATATT AATATT AATATT AATATT
1 AATATT AATATT AATATT AATATT AATATT AATATT AATATT AATATT
33326709 AATATT AATATT AATATT AATATT AATATT AATATT AATATT AATATT
1 AATATT AATATT AATATT AATATT AATATT AATATT AATATT AATATT
33326757 AATATT AATATT AATATT A
1 AATATT AATATT AATATT A
33326776 GAATAACAAA
Statistics
Matches: 109, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 109 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
AATATT
Found at i:33326952 original size:3 final size:3
Alignment explanation
Indices: 33326887--33326934 Score: 51
Period size: 3 Copynumber: 16.0 Consensus size: 3
33326877 AAATGGAAAT
* * * * *
33326887 ATA ATG ATA ATA ACA ATA ATA CTA ATA GTA ATA CTA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
33326935 TATTAGTTTT
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:33329179 original size:13 final size:13
Alignment explanation
Indices: 33329161--33329190 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
33329151 ACTAAGTTTA
33329161 AATTTTAGTACTC
1 AATTTTAGTACTC
*
33329174 AATTTTATTACTC
1 AATTTTAGTACTC
33329187 AATT
1 AATT
33329191 AGAATCCACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.13, G:0.03, T:0.50
Consensus pattern (13 bp):
AATTTTAGTACTC
Found at i:33333767 original size:86 final size:86
Alignment explanation
Indices: 33333622--33333825 Score: 282
Period size: 86 Copynumber: 2.4 Consensus size: 86
33333612 TTATGTGGAA
* * * ** *
33333622 AAACGCCGCTATAGAACATAACATTTACCAGTGCTCTTCCCATAAACACCGCTAAAGAACATGAC
1 AAACGCCGCTATAGAACATGACATTTAGCGGCACTCTTCCCACAAACACCGCTAAAGAACATGAC
33333687 CTTTAGCGGCGCTTTCCCCAC
66 CTTTAGCGGCGCTTTCCCCAC
* * * *
33333708 AAACGCCGCTATAGAATATGACGTTTAGCGGCACTTTTCCCACAAACACTGCTAAAGAACATGAC
1 AAACGCCGCTATAGAACATGACATTTAGCGGCACTCTTCCCACAAACACCGCTAAAGAACATGAC
33333773 CTTTAGCGGCGCTTTCCCCAC
66 CTTTAGCGGCGCTTTCCCCAC
* * * *
33333794 AAATGCCGCTAAATAACATGACCTTTAGCGGC
1 AAACGCCGCTATAGAACATGACATTTAGCGGC
33333826 GTTTTTAGTA
Statistics
Matches: 103, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
86 103 1.00
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (86 bp):
AAACGCCGCTATAGAACATGACATTTAGCGGCACTCTTCCCACAAACACCGCTAAAGAACATGAC
CTTTAGCGGCGCTTTCCCCAC
Found at i:33333805 original size:43 final size:43
Alignment explanation
Indices: 33333622--33333826 Score: 241
Period size: 43 Copynumber: 4.8 Consensus size: 43
33333612 TTATGTGGAA
* * * * * * *
33333622 AAACGCCGCTATAGAACATAACATTTACCAGTGCTCTT-CCCAT
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCT-TTCCCCAC
*
33333665 AAACACCGCTAAAGAACATGACCTTTAGCGGCGCTTTCCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTCCCCAC
* * * * *
33333708 AAACGCCGCTATAGAATATGACGTTTAGCGGCACTTTTCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTCCCCAC
* *
33333751 AAACACTGCTAAAGAACATGACCTTTAGCGGCGCTTTCCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTCCCCAC
* *
33333794 AAATGCCGCTAAATAACATGACCTTTAGCGGCG
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCG
33333827 TTTTTAGTAA
Statistics
Matches: 136, Mismatches: 25, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
42 2 0.01
43 134 0.99
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTCCCCAC
Found at i:33334227 original size:21 final size:21
Alignment explanation
Indices: 33334198--33334247 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
33334188 TTCTGCTTTG
*
33334198 CTCTACTTCCCTCGCTGCTGC
1 CTCTGCTTCCCTCGCTGCTGC
* * *
33334219 CTCTGCTTCCTTCGTTGCTGT
1 CTCTGCTTCCCTCGCTGCTGC
*
33334240 CTCCGCTT
1 CTCTGCTT
33334248 TAAGTTGTAG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.02, C:0.42, G:0.16, T:0.40
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCTGC
Found at i:33340565 original size:29 final size:30
Alignment explanation
Indices: 33340506--33340577 Score: 80
Period size: 29 Copynumber: 2.5 Consensus size: 30
33340496 GATTTGGATT
*
33340506 TAAATTTTTAAAATAATATAATTTGAGTAA
1 TAAATTTTTAAAATAATATAATTTCAGTAA
33340536 TAAATTATTT-AAA-AATATAATATTCA-TAA
1 TAAATT-TTTAAAATAATATAAT-TTCAGTAA
*
33340565 T-TATTTTTAAAAT
1 TAAATTTTTAAAAT
33340578 TTATGAATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
27 3 0.08
28 6 0.17
29 12 0.33
30 12 0.33
31 3 0.08
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.46
Consensus pattern (30 bp):
TAAATTTTTAAAATAATATAATTTCAGTAA
Found at i:33348364 original size:5 final size:5
Alignment explanation
Indices: 33348354--33348379 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
33348344 GAACAAATAT
33348354 ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG A
33348380 ATTTCATCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATTCG
Found at i:33352456 original size:6 final size:6
Alignment explanation
Indices: 33352445--33352483 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
33352435 AATAATCATA
33352445 TATATT TATATT TATATT TATATT TATATT TATATT TAT
1 TATATT TATATT TATATT TATATT TATATT TATATT TAT
33352484 TCTTATCATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
TATATT
Found at i:33363996 original size:15 final size:15
Alignment explanation
Indices: 33363976--33364004 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
33363966 TGTTAAAAAA
33363976 TGGATAATTTTGTTG
1 TGGATAATTTTGTTG
33363991 TGGATAATTTTGTT
1 TGGATAATTTTGTT
33364005 ATAGATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.24, T:0.55
Consensus pattern (15 bp):
TGGATAATTTTGTTG
Found at i:33364186 original size:17 final size:16
Alignment explanation
Indices: 33364108--33364199 Score: 55
Period size: 17 Copynumber: 5.4 Consensus size: 16
33364098 AAATAATGAG
33364108 TATTTTATATAATTAATT
1 TATTTTATAT-ATTAA-T
*
33364126 TATATTTTTATATTTAAAAT
1 TAT-TTTATATA-TT--AAT
*
33364146 TA-TTTA-AT-CTAAT
1 TATTTTATATATTAAT
*
33364159 TGATTTAATATATTCAAT
1 T-ATTTTATATATT-AAT
*
33364177 TATTTTATATATTAAA
1 TATTTTATATATTAAT
33364193 TATTTTA
1 TATTTTA
33364200 AAAAAAATCG
Statistics
Matches: 58, Mismatches: 7, Indels: 20
0.68 0.08 0.24
Matches are distributed among these distances:
13 4 0.07
14 1 0.02
15 4 0.07
16 11 0.19
17 14 0.24
18 11 0.19
19 8 0.14
20 3 0.05
21 2 0.03
ACGTcount: A:0.39, C:0.02, G:0.01, T:0.58
Consensus pattern (16 bp):
TATTTTATATATTAAT
Found at i:33377051 original size:43 final size:44
Alignment explanation
Indices: 33376978--33377065 Score: 169
Period size: 43 Copynumber: 2.0 Consensus size: 44
33376968 TTATTTTATC
33376978 CAGACTATACATGCCATAAGCTCAAAATTTAACTTAGTAAAATA
1 CAGACTATACATGCCATAAGCTCAAAATTTAACTTAGTAAAATA
33377022 CAGACTATACATGCC-TAAGCTCAAAATTTAACTTAGTAAAATA
1 CAGACTATACATGCCATAAGCTCAAAATTTAACTTAGTAAAATA
33377065 C
1 C
33377066 CGAAGAAAAC
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 29 0.66
44 15 0.34
ACGTcount: A:0.44, C:0.19, G:0.09, T:0.27
Consensus pattern (44 bp):
CAGACTATACATGCCATAAGCTCAAAATTTAACTTAGTAAAATA
Found at i:33377703 original size:41 final size:42
Alignment explanation
Indices: 33377587--33377703 Score: 118
Period size: 41 Copynumber: 2.8 Consensus size: 42
33377577 TTGTATAAAA
*
33377587 CACCGGCATAAAGCCTGCTAGGCAC-AAAGCCTG-ATACATTT
1 CACCGGCATCAAGCCTGCTAGGC-CTAAAGCCTGAATACATTT
* * *
33377628 CACCGGCA-CAAAGCCTGCTAGACATAAAGTCTGAATTA-A-TT
1 CACCGGCATC-AAGCCTGCTAGGCCTAAAGCCTGAA-TACATTT
* *
33377669 CACCGGCATCAAGCCTACTAGGCCTTAAGCCTGAA
1 CACCGGCATCAAGCCTGCTAGGCCTAAAGCCTGAA
33377704 AATCTCAAAT
Statistics
Matches: 62, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
41 57 0.92
42 3 0.05
43 2 0.03
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.20
Consensus pattern (42 bp):
CACCGGCATCAAGCCTGCTAGGCCTAAAGCCTGAATACATTT
Found at i:33377872 original size:64 final size:67
Alignment explanation
Indices: 33377748--33377900 Score: 197
Period size: 64 Copynumber: 2.3 Consensus size: 67
33377738 TACAACATTA
* * *
33377748 AAATTCAGTTCAAAGAA-TTTGTAACCTATATTCGAACCATACACATATGTATGTAAAATTCATA
1 AAATTCAGCTC-AAGAACTTTATAACCTATATTCGAA-CATACACATATGTATATAAAATTCATA
33377812 AATT
64 AATT
* * *
33377816 AAATTCAGCTCAAGAACTTTATAACCTATATTTG-A-AT-CACATATGTATATAAAATTCGTACA
1 AAATTCAGCTCAAGAACTTTATAACCTATATTCGAACATACACATATGTATATAAAATTCATAAA
33377878 TT
66 TT
*
33377880 AATTTCAGCTCAAGAACTTTA
1 AAATTCAGCTCAAGAACTTTA
33377901 AAATATATAT
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
64 44 0.57
65 2 0.03
67 6 0.08
68 25 0.32
ACGTcount: A:0.41, C:0.16, G:0.08, T:0.35
Consensus pattern (67 bp):
AAATTCAGCTCAAGAACTTTATAACCTATATTCGAACATACACATATGTATATAAAATTCATAAA
TT
Found at i:33378050 original size:60 final size:60
Alignment explanation
Indices: 33377931--33378055 Score: 139
Period size: 60 Copynumber: 2.1 Consensus size: 60
33377921 ACCGTATGTG
* * * **
33377931 TATATATATATTTCATAATATTAAGTTCAACTCAAAGAACTTGTATCATTCATTCAACTA
1 TATATATATAATTCATAATATTAAATTCAACTCAAAGAAATTAAATCATTCATTCAACTA
*
33377991 TATATATATAATTCATAACT-TTAAATTCAACTC-ATGAAATTAAATC-TTACATTCGAACTA
1 TATATATATAATTCATAA-TATTAAATTCAACTCAAAGAAATTAAATCATT-CATTC-AACTA
*
33378051 CATAT
1 TATAT
33378056 CCATGTAAAT
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
58 2 0.04
59 14 0.25
60 38 0.69
61 1 0.02
ACGTcount: A:0.42, C:0.15, G:0.04, T:0.39
Consensus pattern (60 bp):
TATATATATAATTCATAATATTAAATTCAACTCAAAGAAATTAAATCATTCATTCAACTA
Found at i:33382521 original size:18 final size:18
Alignment explanation
Indices: 33382500--33382543 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
33382490 TAGAGTTAGA
*
33382500 AAATATATAAAA-AGATAT
1 AAATATATAAAATA-AAAT
*
33382518 AAATAAATAAAATAAAAT
1 AAATATATAAAATAAAAT
33382536 AAATATAT
1 AAATATAT
33382544 TTAAAATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 21 0.95
19 1 0.05
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.27
Consensus pattern (18 bp):
AAATATATAAAATAAAAT
Found at i:33390390 original size:17 final size:18
Alignment explanation
Indices: 33390358--33390391 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
33390348 AAATGTATAA
33390358 TTATCACAACTTTTTATT
1 TTATCACAACTTTTTATT
*
33390376 TTATCTCAA-TTTTTAT
1 TTATCACAACTTTTTAT
33390392 CTAATAAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.26, C:0.15, G:0.00, T:0.59
Consensus pattern (18 bp):
TTATCACAACTTTTTATT
Found at i:33402074 original size:13 final size:13
Alignment explanation
Indices: 33402056--33402082 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
33402046 AGTTCTTCAT
33402056 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
33402069 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
33402082 T
1 T
33402083 AACCCCACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:33402171 original size:117 final size:117
Alignment explanation
Indices: 33401965--33402199 Score: 443
Period size: 117 Copynumber: 2.0 Consensus size: 117
33401955 GACCTGAATC
* *
33401965 TAACCCCACCCGACCTAACCGATTAGCACTAATTTAACTTGAATCTAGCCCCGCCGACATAACCC
1 TAACCCCACCCGACCTAACCGATTACCACTAATTTAACTTGAATCTAGCCCCGCCGACATAAACC
33402030 ATTAGCACTAAAGGCCAGTTCTTCATTGCTTTTGAAAAGTGCTTTTGAAAAG
66 ATTAGCACTAAAGGCCAGTTCTTCATTGCTTTTGAAAAGTGCTTTTGAAAAG
33402082 TAACCCCACCCGACCTAACCGATTACCACTAATTTAACTTGAATCTAGCCCCGCCGACATAAACC
1 TAACCCCACCCGACCTAACCGATTACCACTAATTTAACTTGAATCTAGCCCCGCCGACATAAACC
*
33402147 ATTAGCACTAAGGGCCAGTTCTTCATTGCTTTTGAAAAGTGCTTTTGAAAAG
66 ATTAGCACTAAAGGCCAGTTCTTCATTGCTTTTGAAAAGTGCTTTTGAAAAG
33402199 T
1 T
33402200 GCTGTGGAAA
Statistics
Matches: 115, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
117 115 1.00
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (117 bp):
TAACCCCACCCGACCTAACCGATTACCACTAATTTAACTTGAATCTAGCCCCGCCGACATAAACC
ATTAGCACTAAAGGCCAGTTCTTCATTGCTTTTGAAAAGTGCTTTTGAAAAG
Found at i:33402191 original size:13 final size:13
Alignment explanation
Indices: 33402173--33402238 Score: 96
Period size: 13 Copynumber: 5.1 Consensus size: 13
33402163 AGTTCTTCAT
33402173 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
33402186 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
33402199 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
* *
33402212 TGATTTTGAGAAG
1 TGCTTTTGAAAAG
33402225 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
33402238 T
1 T
33402239 TTGGTTTAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 45 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:33402460 original size:31 final size:29
Alignment explanation
Indices: 33402407--33402468 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 29
33402397 TTATAACTTG
*
33402407 TTGTTAATATTTTAATATATAAAATATAAA
1 TTGTAAATATTTTAATATAT-AAATATAAA
*
33402437 TTGTAAATATTTTTAAT-TAATAAATATTAA
1 TTGTAAATA-TTTTAATAT-ATAAATATAAA
33402467 TT
1 TT
33402469 ATTTATAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
30 19 0.68
31 9 0.32
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (29 bp):
TTGTAAATATTTTAATATATAAATATAAA
Found at i:33412750 original size:41 final size:42
Alignment explanation
Indices: 33412693--33413011 Score: 355
Period size: 41 Copynumber: 7.6 Consensus size: 42
33412683 GAATGAAATG
* *
33412693 GGTTGCTATGTTCTGATTCC-CCGTATCATTGATTATAAGGT
1 GGTTGCTAAGTGCTGATTCCACCGTATCATTGATTATAAGGT
* * *
33412734 GGTTGCTAAGTGCTGATTCCACCATATCCTTGATTGTGAAAGG-
1 GGTTGCTAAGTGCTGATTCCACCGTATCATTGATTAT--AAGGT
* *
33412777 GGTTGTTATGTGCTGATTCC-CCGTATCATTGATTATAAGGT
1 GGTTGCTAAGTGCTGATTCCACCGTATCATTGATTATAAGGT
* * *
33412818 GGCTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGG-
1 GGTTGCTAAGTGCTGATTCCACCGTATCATTGATTAT--AAGGT
* * *
33412861 GGTTGCTATGTGTTGATTCC-TCGTATCATTGATTATAAGGT
1 GGTTGCTAAGTGCTGATTCCACCGTATCATTGATTATAAGGT
*
33412902 GGTTGCTAAGTGCTGATT-CAACGTATCAATT-ATTATAAGGT
1 GGTTGCTAAGTGCTGATTCCACCGTATC-ATTGATTATAAGGT
* * ** *
33412943 GGTTGCTAAGTGCTGATTCCACCAGGATCCTTTGAACATGAGGT
1 GGTTGCTAAGTGCTGATTCCACC-GTAT-CATTGATTATAAGGT
33412987 GGTTGCTAAGTGCTGATTCCACCGT
1 GGTTGCTAAGTGCTGATTCCACCGT
33413012 GTAACGGTTA
Statistics
Matches: 233, Mismatches: 31, Indels: 26
0.80 0.11 0.09
Matches are distributed among these distances:
40 9 0.04
41 85 0.36
42 59 0.25
43 41 0.18
44 39 0.17
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (42 bp):
GGTTGCTAAGTGCTGATTCCACCGTATCATTGATTATAAGGT
Found at i:33412827 original size:84 final size:84
Alignment explanation
Indices: 33412686--33413009 Score: 422
Period size: 84 Copynumber: 3.8 Consensus size: 84
33412676 ATTCTTTGAA
* *
33412686 TGAAATGGGTTGCTATGTTCTGATTCCCCGTATCATTGATTATAAGGTGGTTGCTAAGTGCTGAT
1 TGAAAGGGGTTGCTATGTGCTGATTCCCCGTATCATTGATTATAAGGTGGTTGCTAAGTGCTGAT
33412751 TCCACCATATCCTTGATTG
66 TCCACCATATCCTTGATTG
* *
33412770 TGAAAGGGGTTGTTATGTGCTGATTCCCCGTATCATTGATTATAAGGTGGCTGCTAAGTGCTGAT
1 TGAAAGGGGTTGCTATGTGCTGATTCCCCGTATCATTGATTATAAGGTGGTTGCTAAGTGCTGAT
*
33412835 TCCACCGTATCCTTGATTG
66 TCCACCATATCCTTGATTG
* *
33412854 TGAAAGGGGTTGCTATGTGTTGATTCCTCGTATCATTGATTATAAGGTGGTTGCTAAGTGCTGAT
1 TGAAAGGGGTTGCTATGTGCTGATTCCCCGTATCATTGATTATAAGGTGGTTGCTAAGTGCTGAT
* * * *
33412919 T-CAACGTATCAATT-ATTA
66 TCCACCATATC-CTTGATTG
* * * ** *
33412937 T--AAGGTGGTTGCTAAGTGCTGATTCCACCAGGATCCTTTGAACATGAGGTGGTTGCTAAGTGC
1 TGAAAGG-GGTTGCTATGTGCTGATTCC-CC-GTAT-CATTGATTATAAGGTGGTTGCTAAGTGC
33413000 TGATTCCACC
62 TGATTCCACC
33413010 GTGTAACGGT
Statistics
Matches: 213, Mismatches: 21, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
81 4 0.02
82 18 0.08
83 13 0.06
84 146 0.69
85 29 0.14
86 3 0.01
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (84 bp):
TGAAAGGGGTTGCTATGTGCTGATTCCCCGTATCATTGATTATAAGGTGGTTGCTAAGTGCTGAT
TCCACCATATCCTTGATTG
Found at i:33412918 original size:125 final size:125
Alignment explanation
Indices: 33412696--33413009 Score: 359
Period size: 125 Copynumber: 2.5 Consensus size: 125
33412686 TGAAATGGGT
* * *
33412696 TGCTATGTTCTGATTCC-CCGTATCATTGATTATAAGGTGGTTGCTAAGTGCTGATTCCACCATA
1 TGCTAAGTGCTGATTCCACCGTATCCTTGATTATAAGGTGGTTGCTAAGTGCTGATTCCACCATA
* * * * **
33412760 TCCTTGATTGTGAAAGGGGTTGTTATGTGCTGATTCCCCGTATC-ATTGATTATAAGGTGGC
66 TCATTGATTAT-AAAGGGGTTGCTAAGTGCTGATTCAACGTATCAATT-ATTATAAGGTGGC
* * * * *
33412821 TGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGG-GGTTGCTATGTGTTGATTCC-TCG
1 TGCTAAGTGCTGATTCCACCGTATCCTTGATTAT--AAGGTGGTTGCTAAGTGCTGATTCCACCA
*
33412884 TATCATTGATTAT-AAGGTGGTTGCTAAGTGCTGATTCAACGTATCAATTATTATAAGGTGGT
64 TATCATTGATTATAAAGG-GGTTGCTAAGTGCTGATTCAACGTATCAATTATTATAAGGTGGC
* ** *
33412946 TGCTAAGTGCTGATTCCACCAGGATCCTTTGAACATGAGGTGGTTGCTAAGTGCTGATTCCACC
1 TGCTAAGTGCTGATTCCACC-GTATCC-TTGATTATAAGGTGGTTGCTAAGTGCTGATTCCACC
33413010 GTGTAACGGT
Statistics
Matches: 157, Mismatches: 23, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
124 4 0.03
125 73 0.46
126 52 0.33
127 24 0.15
128 4 0.03
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.36
Consensus pattern (125 bp):
TGCTAAGTGCTGATTCCACCGTATCCTTGATTATAAGGTGGTTGCTAAGTGCTGATTCCACCATA
TCATTGATTATAAAGGGGTTGCTAAGTGCTGATTCAACGTATCAATTATTATAAGGTGGC
Found at i:33421802 original size:84 final size:84
Alignment explanation
Indices: 33421661--33422072 Score: 576
Period size: 84 Copynumber: 4.9 Consensus size: 84
33421651 ATTCTTTGAA
* *
33421661 TGAAATGGGTTGCTATGTTCTGATTCCCCGTATCATTTATTATAAGGTGGTTGCTAAGTGCTGAT
1 TGAAAGGGGTTGCTATGTGCTGATTCCCCGTATCATTTATTATAAGGTGGTTGCTAAGTGCTGAT
33421726 TCCACCATATCCTTGATTG
66 TCCACCATATCCTTGATTG
*
33421745 TGAAAGGGGTTGTTATGTGCTGATTCCCCGTATCATTTATTATAAGGTGGTTGCTAAGTGCTGAT
1 TGAAAGGGGTTGCTATGTGCTGATTCCCCGTATCATTTATTATAAGGTGGTTGCTAAGTGCTGAT
33421810 TCCACCATATCCTTGATTG
66 TCCACCATATCCTTGATTG
* * *
33421829 TGAAAGGGGTTGTTATGTGCTGATTCCCCGTATCATTGATTATAAGGTGGCTGCTAAGTGCTGAT
1 TGAAAGGGGTTGCTATGTGCTGATTCCCCGTATCATTTATTATAAGGTGGTTGCTAAGTGCTGAT
*
33421894 TCCACCGTATCCTTGATTG
66 TCCACCATATCCTTGATTG
* * *
33421913 TGAAAGGGGTTGCTATGTGTTGATTCCTCGTATCATTGATTATAAGGTGGTTGCTAAGTGCTGAT
1 TGAAAGGGGTTGCTATGTGCTGATTCCCCGTATCATTTATTATAAGGTGGTTGCTAAGTGCTGAT
* ***
33421978 TCCACCAGGATCCTTTGAACA
66 TCCACCA-TATCC-TTGATTG
* * * ** *
33421999 TG--AGGTGGTTGCTAAGTGCTGATTCCACCAGGATCCTTTGAACATGAGGTGGTTGCTAAGTGC
1 TGAAAGG-GGTTGCTATGTGCTGATTCC-CC-GTATCATTT-ATTATAAGGTGGTTGCTAAGTGC
33422062 TGATTCCACCA
62 TGATTCCACCA
33422073 GGATCCTTTG
Statistics
Matches: 298, Mismatches: 24, Indels: 8
0.90 0.07 0.02
Matches are distributed among these distances:
84 232 0.78
85 22 0.07
86 7 0.02
87 6 0.02
88 31 0.10
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.36
Consensus pattern (84 bp):
TGAAAGGGGTTGCTATGTGCTGATTCCCCGTATCATTTATTATAAGGTGGTTGCTAAGTGCTGAT
TCCACCATATCCTTGATTG
Found at i:33422020 original size:44 final size:44
Alignment explanation
Indices: 33421668--33422115 Score: 425
Period size: 44 Copynumber: 10.5 Consensus size: 44
33421658 GAATGAAATG
* * * *
33421668 GGTTGCTATGTTCTGATTCC-CC-GTATCATTT-ATTATAAGGT
1 GGTTGCTAAGTGCTGATTCCACCAGTATCCTTTGATTATGAGGT
*
33421709 GGTTGCTAAGTGCTGATTCCACCA-TATCC-TTGATTGTGAAAGG-
1 GGTTGCTAAGTGCTGATTCCACCAGTATCCTTTGATTATG--AGGT
* * * *
33421752 GGTTGTTATGTGCTGATTCC-CC-GTATCATTT-ATTATAAGGT
1 GGTTGCTAAGTGCTGATTCCACCAGTATCCTTTGATTATGAGGT
*
33421793 GGTTGCTAAGTGCTGATTCCACCA-TATCC-TTGATTGTGAAAGG-
1 GGTTGCTAAGTGCTGATTCCACCAGTATCCTTTGATTATG--AGGT
* * * *
33421836 GGTTGTTATGTGCTGATTCC-CC-GTAT-CATTGATTATAAGGT
1 GGTTGCTAAGTGCTGATTCCACCAGTATCCTTTGATTATGAGGT
* *
33421877 GGCTGCTAAGTGCTGATTCCACC-GTATCC-TTGATTGTGAAAGG-
1 GGTTGCTAAGTGCTGATTCCACCAGTATCCTTTGATTATG--AGGT
* * * * *
33421920 GGTTGCTATGTGTTGATTCC-TC-GTAT-CATTGATTATAAGGT
1 GGTTGCTAAGTGCTGATTCCACCAGTATCCTTTGATTATGAGGT
* **
33421961 GGTTGCTAAGTGCTGATTCCACCAGGATCCTTTGAACATGAGGT
1 GGTTGCTAAGTGCTGATTCCACCAGTATCCTTTGATTATGAGGT
* **
33422005 GGTTGCTAAGTGCTGATTCCACCAGGATCCTTTGAACATGAGGT
1 GGTTGCTAAGTGCTGATTCCACCAGTATCCTTTGATTATGAGGT
* **
33422049 GGTTGCTAAGTGCTGATTCCACCAGGATCCTTTGAACATGAGGT
1 GGTTGCTAAGTGCTGATTCCACCAGTATCCTTTGATTATGAGGT
33422093 GGTTGCTAAGTGCTGATTCCACC
1 GGTTGCTAAGTGCTGATTCCACC
33422116 GTGTAACGGT
Statistics
Matches: 344, Mismatches: 38, Indels: 47
0.80 0.09 0.11
Matches are distributed among these distances:
40 9 0.03
41 77 0.22
42 68 0.20
43 59 0.17
44 131 0.38
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.35
Consensus pattern (44 bp):
GGTTGCTAAGTGCTGATTCCACCAGTATCCTTTGATTATGAGGT
Found at i:33437268 original size:31 final size:29
Alignment explanation
Indices: 33437215--33437276 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 29
33437205 ATATAACTTG
*
33437215 TTGTTAATATTTTAATATATAAAATATAAA
1 TTGTAAATATTTTAATATAT-AAATATAAA
*
33437245 TTGTAAATATTTTTAAT-TAATAAATATTAA
1 TTGTAAATA-TTTTAATAT-ATAAATATAAA
33437275 TT
1 TT
33437277 ATTTATAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
30 19 0.68
31 9 0.32
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (29 bp):
TTGTAAATATTTTAATATATAAATATAAA
Found at i:33441859 original size:24 final size:22
Alignment explanation
Indices: 33441830--33441878 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
33441820 ATTATTTAAT
*
33441830 AAAAATATCATTCAAAAATTCAAA
1 AAAAATAT-ATTCAAAAAAT-AAA
*
33441854 AAAAATATATTTAAAAAATAAA
1 AAAAATATATTCAAAAAATAAA
33441876 AAA
1 AAA
33441879 TTCAAAAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 6 0.26
23 9 0.39
24 8 0.35
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.24
Consensus pattern (22 bp):
AAAAATATATTCAAAAAATAAA
Found at i:33441961 original size:12 final size:12
Alignment explanation
Indices: 33441944--33441985 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
33441934 TACGTAAAAC
33441944 GTCACATGAAAT
1 GTCACATGAAAT
*
33441956 GTCACAT-CAAT
1 GTCACATGAAAT
*
33441967 GCCACATGAAAT
1 GTCACATGAAAT
33441979 GTCACAT
1 GTCACAT
33441986 CAATGCCATT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
11 9 0.36
12 16 0.64
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.24
Consensus pattern (12 bp):
GTCACATGAAAT
Found at i:33441972 original size:23 final size:23
Alignment explanation
Indices: 33441946--33441993 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
33441936 CGTAAAACGT
33441946 CACATGAAATGTCACATCAATGC
1 CACATGAAATGTCACATCAATGC
33441969 CACATGAAATGTCACATCAATGC
1 CACATGAAATGTCACATCAATGC
33441992 CA
1 CA
33441994 TTAAAATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.40, C:0.27, G:0.12, T:0.21
Consensus pattern (23 bp):
CACATGAAATGTCACATCAATGC
Found at i:33443598 original size:4 final size:4
Alignment explanation
Indices: 33443589--33443620 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
33443579 AAAACAAATA
33443589 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT
33443621 ACCTTTGAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTAT
Found at i:33444596 original size:18 final size:18
Alignment explanation
Indices: 33444573--33444611 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
33444563 AATTTATGAT
33444573 TATAGCTATTTAAAACAC
1 TATAGCTATTTAAAACAC
33444591 TATAGCTATTTAAAACAC
1 TATAGCTATTTAAAACAC
33444609 TAT
1 TAT
33444612 TTATCAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.36
Consensus pattern (18 bp):
TATAGCTATTTAAAACAC
Found at i:33445692 original size:17 final size:18
Alignment explanation
Indices: 33445662--33445707 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
33445652 ATTTAAATTG
33445662 CGGTCGCGGTCGCGTTTT
1 CGGTCGCGGTCGCGTTTT
33445680 CGGTCGC-GTCGCG-TTT
1 CGGTCGCGGTCGCGTTTT
33445696 --GTCGCGGTCGCG
1 CGGTCGCGGTCGCG
33445708 GACATAACGG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
16 3 0.11
17 6 0.22
18 7 0.26
ACGTcount: A:0.00, C:0.30, G:0.41, T:0.28
Consensus pattern (18 bp):
CGGTCGCGGTCGCGTTTT
Found at i:33447519 original size:14 final size:14
Alignment explanation
Indices: 33447481--33447523 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
33447471 TAAAATGTAC
33447481 AATATAATTAAA-T
1 AATATAATTAAATT
33447494 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
33447509 AA-ATAATTTAATT
1 AATATAATTAAATT
33447522 AA
1 AA
33447524 CTGTTTACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:33450008 original size:3 final size:3
Alignment explanation
Indices: 33450002--33450058 Score: 87
Period size: 3 Copynumber: 18.7 Consensus size: 3
33449992 AAAAAATTTC
* *
33450002 ATA ATA ATA ATA ATA ATG GTA ATAA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA
33450048 ATA ATA ATA AT
1 ATA ATA ATA AT
33450059 CATGATGATG
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
3 46 0.94
4 3 0.06
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:33450066 original size:3 final size:3
Alignment explanation
Indices: 33450060--33450086 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
33450050 AATAATAATC
33450060 ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG
33450087 GTATTAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:33451819 original size:12 final size:13
Alignment explanation
Indices: 33451799--33451835 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
33451789 CAACAAACAC
33451799 AACATATATATAT
1 AACATATATATAT
33451812 AA-ATATATATTAT
1 AACATATATA-TAT
33451825 AACATAT-TATA
1 AACATATATATA
33451836 ACATTTCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 9 0.41
13 9 0.41
14 4 0.18
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (13 bp):
AACATATATATAT
Found at i:33452574 original size:15 final size:16
Alignment explanation
Indices: 33452554--33452587 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
33452544 TGACATTCTG
33452554 CATTC-ATGCAAATAT
1 CATTCAATGCAAATAT
33452569 CATTCAATGCAAATAT
1 CATTCAATGCAAATAT
33452585 CAT
1 CAT
33452588 ACACACCTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.32
Consensus pattern (16 bp):
CATTCAATGCAAATAT
Found at i:33453345 original size:89 final size:89
Alignment explanation
Indices: 33452798--33453324 Score: 894
Period size: 89 Copynumber: 5.9 Consensus size: 89
33452788 ACTAGAAGCA
* ** ** * * * *
33452798 GCAGATCTTGTCTTCCTGTACCGGCAGCAAAGCAGATCGAAGACACCAGCCTCG-CCTCCCTGAG
1 GCAGATATTGTCTTCCTACACCGATAGCGAAGTAGATCAAAGACACAAGCCT-GACCTCCCTGAG
*
33452862 TTTGCAGCGAAGCAGACTGAATATG
65 TTTGCAGCGGAGCAGACTGAATATG
* * *
33452887 GAAGATCTTGTCTTCCTACACCAATAGCGAAGTAGATCAAAGACACAAGCCTGACCTCCCTGAGT
1 GCAGATATTGTCTTCCTACACCGATAGCGAAGTAGATCAAAGACACAAGCCTGACCTCCCTGAGT
33452952 TTGCAGCGGAGCAGACTGAATATG
66 TTGCAGCGGAGCAGACTGAATATG
33452976 GCAGATATTGTCTTCCTACACCGATAGCGAAGTAGATCAAAGACACAAGCCTGACCTCCCTGAGT
1 GCAGATATTGTCTTCCTACACCGATAGCGAAGTAGATCAAAGACACAAGCCTGACCTCCCTGAGT
33453041 TTGCAGCGGAGCAGACTGAATATG
66 TTGCAGCGGAGCAGACTGAATATG
33453065 GCAGATATTGTCTTCCTACACCGATAGCGAAGTAGATCAAAGACACAAGCCTGACCTCCCTGAGT
1 GCAGATATTGTCTTCCTACACCGATAGCGAAGTAGATCAAAGACACAAGCCTGACCTCCCTGAGT
33453130 TTGCAGCGGAGCAGACTGAATATG
66 TTGCAGCGGAGCAGACTGAATATG
33453154 GCAGATATTGTCTTCCTACACCGATAGCGAAGTAGATCAAAGACACAAGCCTGACCTCCCTGAGT
1 GCAGATATTGTCTTCCTACACCGATAGCGAAGTAGATCAAAGACACAAGCCTGACCTCCCTGAGT
33453219 TTGCAGCGGAGCAGACTGAATATG
66 TTGCAGCGGAGCAGACTGAATATG
*
33453243 GCAGATATTGTCTTCCTACACCGATAGCGAAGTAGATCAAAGACACAAGCCTGATCTCCCTGAGT
1 GCAGATATTGTCTTCCTACACCGATAGCGAAGTAGATCAAAGACACAAGCCTGACCTCCCTGAGT
* *
33453308 TTGCAGAGGAGTAGACT
66 TTGCAGCGGAGCAGACT
33453325 AAAAGCAGTA
Statistics
Matches: 420, Mismatches: 17, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
88 1 0.00
89 419 1.00
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.21
Consensus pattern (89 bp):
GCAGATATTGTCTTCCTACACCGATAGCGAAGTAGATCAAAGACACAAGCCTGACCTCCCTGAGT
TTGCAGCGGAGCAGACTGAATATG
Found at i:33453393 original size:267 final size:265
Alignment explanation
Indices: 33452778--33453394 Score: 889
Period size: 267 Copynumber: 2.3 Consensus size: 265
33452768 CAGAAATTAT
* * *
33452778 AGAGGAGTGGACTAGAAGCAGCAGATCTTGTCTTCCTGTACCGGCAGCAAAGCAGATCG-AAGAC
1 AGAGGAGTAGACTAAAAGCAG-AGATC-TGTCTTCCTGTACCGGCAGCGAAGCAGAT-GAAAGAC
* * *
33452842 ACCAGCCTCGCCTCCCTGAGTTTGCAGCGAAGCAGACTGAATATGGAAGATCTTGTCTTCCTACA
63 ACAAGCCTCACCTCCCTGAGTTTGCAGCGAAGCAGACTGAATATGGAAGATATTGTCTTCCTACA
33452907 CCAATAGCGAAGTAGATCAAAGACACAAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAA
128 CCAATAGCGAAGTAGATCAAAGACACAAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAA
33452972 TATGGCAGATATTGTCTTCCTACACCGATAGCGAAGTAGATCAAAGACACAAGCCTGACCTCCCT
193 TATGGCAGATATTGTCTTCCTACACCGATAGCGAAGTAGATCAAAGACACAAGCCTGACCTCCCT
33453037 GAGTTTGC
258 GAGTTTGC
* * * * ** ** * *
33453045 AGCGGAGCAGACTGAATATGGCAGATAT-TGTCTTCCTACACCGATAGCGAAGTAGATCAAAGAC
1 AGAGGAGTAGACT-AA-A-AGCAGAGATCTGTCTTCCTGTACCGGCAGCGAAGCAGATGAAAGAC
* * *
33453109 ACAAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAATATGGCAGATATTGTCTTCCTACA
63 ACAAGCCTCACCTCCCTGAGTTTGCAGCGAAGCAGACTGAATATGGAAGATATTGTCTTCCTACA
*
33453174 CCGATAGCGAAGTAGATCAAAGACACAAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAA
128 CCAATAGCGAAGTAGATCAAAGACACAAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAA
*
33453239 TATGGCAGATATTGTCTTCCTACACCGATAGCGAAGTAGATCAAAGACACAAGCCTGATCTCCCT
193 TATGGCAGATATTGTCTTCCTACACCGATAGCGAAGTAGATCAAAGACACAAGCCTGACCTCCCT
33453304 GAGTTTGC
258 GAGTTTGC
* * *
33453312 AGAGGAGTAGACTAAAAGCAGTAGATCTGGTCTTTCTGTACTGGCAGTGAAGCAGATAGAAAG-C
1 AGAGGAGTAGACTAAAAGCAG-AGATCT-GTCTTCCTGTACCGGCAGCGAAGCAGAT-GAAAGAC
* * *
33453376 ACTAGCCTTATCTCCCTGA
63 ACAAGCCTCACCTCCCTGA
33453395 ACAGTAGTAG
Statistics
Matches: 305, Mismatches: 37, Indels: 16
0.85 0.10 0.04
Matches are distributed among these distances:
264 4 0.01
265 4 0.01
266 3 0.01
267 281 0.92
268 5 0.02
269 4 0.01
270 4 0.01
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.22
Consensus pattern (265 bp):
AGAGGAGTAGACTAAAAGCAGAGATCTGTCTTCCTGTACCGGCAGCGAAGCAGATGAAAGACACA
AGCCTCACCTCCCTGAGTTTGCAGCGAAGCAGACTGAATATGGAAGATATTGTCTTCCTACACCA
ATAGCGAAGTAGATCAAAGACACAAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAATAT
GGCAGATATTGTCTTCCTACACCGATAGCGAAGTAGATCAAAGACACAAGCCTGACCTCCCTGAG
TTTGC
Found at i:33453710 original size:44 final size:44
Alignment explanation
Indices: 33453661--33453889 Score: 132
Period size: 44 Copynumber: 5.2 Consensus size: 44
33453651 TGTCTCTCTA
33453661 AAGTTGCAGTAGAGCAAGTTGAA-ATAGCAAACCTTATC-CCCATG
1 AAGTTGCAGTAGAGCAAGTTGAAGATA-CAAACCTTATCTCCC-TG
* * * **
33453705 AAGTTGCAGTGGGGCAATTTGAAGATACAAGTCTTATCTCCCTG
1 AAGTTGCAGTAGAGCAAGTTGAAGATACAAACCTTATCTCCCTG
* * ** * *
33453749 AAGTTGTAGTAGAGC-AGATTGAAGTTACTAGTCC-AATCTTCCTG
1 AAGTTGCAGTAGAGCAAG-TTGAAGATAC-AAACCTTATCTCCCTG
* * * * *
33453793 AAGTTGCAGTGGAGC-GGATTAAAATGATA-GATCC-TATCTCCCTG
1 AAGTTGCAGTAGAGCAAG-TT-GAA-GATACAAACCTTATCTCCCTG
* * ** *
33453837 AAGTTGCAGTAGAGCATA-TTAAAGATAGCAAATCGCATTTCCCTG
1 AAGTTGCAGTAGAGCA-AGTTGAAGATA-CAAACCTTATCTCCCTG
33453882 AAGTTGCA
1 AAGTTGCA
33453890 ATGGAACAGA
Statistics
Matches: 143, Mismatches: 31, Indels: 21
0.73 0.16 0.11
Matches are distributed among these distances:
42 4 0.03
43 4 0.03
44 106 0.74
45 26 0.18
46 3 0.02
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (44 bp):
AAGTTGCAGTAGAGCAAGTTGAAGATACAAACCTTATCTCCCTG
Found at i:33454035 original size:44 final size:44
Alignment explanation
Indices: 33453965--33454116 Score: 150
Period size: 44 Copynumber: 3.5 Consensus size: 44
33453955 TCAAACTTTG
* * ** *
33453965 TCTCTCTGAAGTTGCAGTAGAACAAGTTGAAA-TTACAAGTCTTA
1 TCTCCCTGAAGTTGCAGTGGGGCAAGTT-AAAGATACAAGTCTTA
*
33454009 TC-CCCTTGAAGTTGCAGTGGGGCAAGTTAAAGATACGAGTCTTA
1 TCTCCC-TGAAGTTGCAGTGGGGCAAGTTAAAGATACAAGTCTTA
* *
33454053 TCTCCCTGAAGTTGAAGTGGGGCAAGTCAAA-AT-CATGAGTCTTA
1 TCTCCCTGAAGTTGCAGTGGGGCAAGTTAAAGATACA--AGTCTTA
* *
33454097 TCTCTCTGATGTTGCAGTGG
1 TCTCCCTGAAGTTGCAGTGG
33454117 AGTAGACTAG
Statistics
Matches: 91, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
42 1 0.01
43 7 0.08
44 80 0.88
45 3 0.03
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (44 bp):
TCTCCCTGAAGTTGCAGTGGGGCAAGTTAAAGATACAAGTCTTA
Found at i:33454113 original size:312 final size:312
Alignment explanation
Indices: 33453515--33454118 Score: 919
Period size: 312 Copynumber: 1.9 Consensus size: 312
33453505 CCACCAATCT
* * *
33453515 TATCTCCCTGAAGTTGCAGTGGAGCATATTAAAGATAGCAAATCGTATTTCCCTGAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGTAGAGCATATTAAAGATAGCAAATCGCATTTCCCTGAAGTTGCAAT
* *
33453580 GGAACAGACTAAATCTATCATAACAGATCTCGTCTCTCTGAAGTTGCAGTAAAGCAGATCATATC
66 GGAACAGACTAAATCTATCATAACAGATCTCGTCTCTCTAAAGTTGCAGCAAAGCAGATCATATC
*
33453645 AAACTTTGTCTCTCTAAAGTTGCAGTAGAGCAAGTTGAAATAGCAAACCTTATCCCCATGAAGTT
131 AAACTTTGTCTCTCTAAAGTTGCAGTAGAACAAGTTGAAATAGCAAACCTTATCCCCATGAAGTT
* * * ** * *
33453710 GCAGTGGGGCAATTTGAAGATACAAGTCTTATCTCCCTGAAGTTGTAGTAGAGCAGATTGAAGTT
196 GCAGTGGGGCAAGTTAAAGATACAAGTCTTATCTCCCTGAAGTTGAAGTAGAGCAGATCAAAATC
33453775 ACTAGTCCAATCTTCCTGAAGTTGCAGTGGAGCGGATTAAAATGATAGATCC
261 ACTAGTCCAATCTTCCTGAAGTTGCAGTGGAGCGGATTAAAATGATAGATCC
33453827 TATCTCCCTGAAGTTGCAGTAGAGCATATTAAAGATAGCAAATCGCATTTCCCTGAAGTTGCAAT
1 TATCTCCCTGAAGTTGCAGTAGAGCATATTAAAGATAGCAAATCGCATTTCCCTGAAGTTGCAAT
* *
33453892 GGAACAGATTAAATCTATCATAACAGATCTCGTCTCTCTAAAGTTGCAGCAGAGCAGATCATATC
66 GGAACAGACTAAATCTATCATAACAGATCTCGTCTCTCTAAAGTTGCAGCAAAGCAGATCATATC
* ** *
33453957 AAACTTTGTCTCTCTGAAGTTGCAGTAGAACAAGTTGAAATTA-CAAGTCTTATCCCCTTGAAGT
131 AAACTTTGTCTCTCTAAAGTTGCAGTAGAACAAGTTGAAA-TAGCAAACCTTATCCCCATGAAGT
* * *
33454021 TGCAGTGGGGCAAGTTAAAGATACGAGTCTTATCTCCCTGAAGTTGAAGTGGGGCA-AGTCAAAA
195 TGCAGTGGGGCAAGTTAAAGATACAAGTCTTATCTCCCTGAAGTTGAAGTAGAGCAGA-TCAAAA
** *
33454085 TCA-TGAGTCTTATC-TCTCTGATGTTGCAGTGGAG
259 TCACT-AGTCCAATCTTC-CTGAAGTTGCAGTGGAG
33454119 TAGACTAGAA
Statistics
Matches: 263, Mismatches: 25, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
311 4 0.02
312 257 0.98
313 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (312 bp):
TATCTCCCTGAAGTTGCAGTAGAGCATATTAAAGATAGCAAATCGCATTTCCCTGAAGTTGCAAT
GGAACAGACTAAATCTATCATAACAGATCTCGTCTCTCTAAAGTTGCAGCAAAGCAGATCATATC
AAACTTTGTCTCTCTAAAGTTGCAGTAGAACAAGTTGAAATAGCAAACCTTATCCCCATGAAGTT
GCAGTGGGGCAAGTTAAAGATACAAGTCTTATCTCCCTGAAGTTGAAGTAGAGCAGATCAAAATC
ACTAGTCCAATCTTCCTGAAGTTGCAGTGGAGCGGATTAAAATGATAGATCC
Found at i:33454286 original size:45 final size:41
Alignment explanation
Indices: 33454230--33454328 Score: 108
Period size: 41 Copynumber: 2.3 Consensus size: 41
33454220 TCTTATCCCA
* * *
33454230 CTGAGGTTGCAGTAGAATAGACTGAAGATAGCAGATCTTACCTCT
1 CTGAAGTTGCAGTAGAATAGA-TCAAGAT-G-AG-TCTTACCTCC
* * *
33454275 CTGAAGTTGCAGTAGAGTAGATCACGATGAGTCTTATCTCC
1 CTGAAGTTGCAGTAGAATAGATCAAGATGAGTCTTACCTCC
33454316 CTGAAGTTGCAGT
1 CTGAAGTTGCAGT
33454329 GGATCGGACC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
41 21 0.44
42 2 0.04
43 1 0.02
44 5 0.10
45 19 0.40
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (41 bp):
CTGAAGTTGCAGTAGAATAGATCAAGATGAGTCTTACCTCC
Found at i:33454321 original size:41 final size:44
Alignment explanation
Indices: 33454218--33454328 Score: 122
Period size: 45 Copynumber: 2.6 Consensus size: 44
33454208 TGAAGCTACA
* *
33454218 AGTCTTATC-CCACTGAGGTTGCAGTAGAATAGACTGAAGATAGC
1 AGTCTTATCTCC-CTGAAGTTGCAGTAGAATAGACTCAAGATAGC
* * * *
33454262 AGATCTTACCTCTCTGAAGTTGCAGTAGAGTAGA-TCACGAT-G-
1 AG-TCTTATCTCCCTGAAGTTGCAGTAGAATAGACTCAAGATAGC
33454304 AGTCTTATCTCCCTGAAGTTGCAGT
1 AGTCTTATCTCCCTGAAGTTGCAGT
33454329 GGATCGGACC
Statistics
Matches: 57, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
41 21 0.37
42 2 0.04
43 1 0.02
44 7 0.12
45 25 0.44
46 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (44 bp):
AGTCTTATCTCCCTGAAGTTGCAGTAGAATAGACTCAAGATAGC
Found at i:33454511 original size:45 final size:44
Alignment explanation
Indices: 33454460--33454552 Score: 105
Period size: 45 Copynumber: 2.1 Consensus size: 44
33454450 TCTCACTGAG
** * **
33454460 GTTGCAGTAGAGTAGACTGAAGATAGCGAGTTTTATCTCCCTAAA
1 GTTGCAGTAGAACAGACTGAAGATA-CGAATCCTATCTCCCTAAA
* * *
33454505 GTTGCAGTGGAACAGACTGAAGCTACTAATCCTATCTCCCTAAA
1 GTTGCAGTAGAACAGACTGAAGATACGAATCCTATCTCCCTAAA
33454549 GTTG
1 GTTG
33454553 TAGTGGAGCA
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (44 bp):
GTTGCAGTAGAACAGACTGAAGATACGAATCCTATCTCCCTAAA
Found at i:33454633 original size:228 final size:224
Alignment explanation
Indices: 33454214--33454704 Score: 619
Period size: 228 Copynumber: 2.2 Consensus size: 224
33454204 AAATTGAAGC
* * * *
33454214 TACAAGTCTTATCCCACTGAGGTTGCAGTAGAATAGACTGAAGATAGCAGATCTTACCTCTCTGA
1 TACAAGTCTTATCTCACTGAGGTTGCAGTAGAGTAGACTGAAGATAGCAGATCTTACCTCCCTAA
** * * * * * * *
33454279 AGTTGCAGTAGAGTAGATCACGATGAGTCTTATCTCCCTGAAGTTGCAGTGGATCGGACCAAAAT
66 AGTTGCAGTAGAACAGATAACGATGAATCCTATCTCCCTAAAGTTGCAGTGGAGCAGACCAAAAC
* * * *
33454344 AATAAATCATATACCTCTGAAGTTGCAGTAGGTCGACTTAGATTTTATCATTTCAAACCTTATCT
131 AATAAATCATATACCTCTGAAGTTGCAGTAGGTCAAATTAGATCTTATCATATCAAACCTTATCT
*
33454409 CACC-GAAGTTGCAGTGGGGCAGGTTAAAGA
196 C-CCTGAAGTTGCAGTGGAGCAGGTT-AAGA
* *
33454439 TACAAGTCTTATCTCACTGAGGTTGCAGTAGAGTAGACTGAAGATAGC-GAGTTTTATCTCCCTA
1 TACAAGTCTTATCTCACTGAGGTTGCAGTAGAGTAGACTGAAGATAGCAGA-TCTTACCTCCCTA
* * * **
33454503 AAGTTGCAGTGGAACAGACTGAAGCTACT-AATCCTATCTCCCTAAAGTTGTAGTGGAGCAGATT
65 AAGTTGCAGTAGAACAGA-T-AA-CGA-TGAATCCTATCTCCCTAAAGTTGCAGTGGAGCAGACC
* *
33454567 AAAACGATGAATCATATACCTCTGAAGTTGCAGTAGGTCAAATTAGATCTTATCATATCAAACCT
126 AAAACAATAAATCATATACCTCTGAAGTTGCAGTAGGTCAAATTAGATCTTATCATATCAAACCT
*
33454632 TATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAGA
191 TATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAGA
* * *
33454666 TACAAGTCTTATCTCCCTGACGTTGCAGTGGAGTAGACT
1 TACAAGTCTTATCTCACTGAGGTTGCAGTAGAGTAGACT
33454705 AAAACCACAA
Statistics
Matches: 229, Mismatches: 31, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
224 2 0.01
225 70 0.31
226 1 0.00
227 42 0.18
228 113 0.49
229 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (224 bp):
TACAAGTCTTATCTCACTGAGGTTGCAGTAGAGTAGACTGAAGATAGCAGATCTTACCTCCCTAA
AGTTGCAGTAGAACAGATAACGATGAATCCTATCTCCCTAAAGTTGCAGTGGAGCAGACCAAAAC
AATAAATCATATACCTCTGAAGTTGCAGTAGGTCAAATTAGATCTTATCATATCAAACCTTATCT
CCCTGAAGTTGCAGTGGAGCAGGTTAAGA
Found at i:33469629 original size:17 final size:17
Alignment explanation
Indices: 33469588--33469629 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
33469578 ATAAAACTAT
*
33469588 TGATAAATTAAATATTA
1 TGATAAATTAAATATCA
* *
33469605 TAAAAAATTAAATATCA
1 TGATAAATTAAATATCA
33469622 TGATAAAT
1 TGATAAAT
33469630 GATATTTAAA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (17 bp):
TGATAAATTAAATATCA
Found at i:33470363 original size:10 final size:11
Alignment explanation
Indices: 33470337--33470362 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
33470327 TAAAAATAAA
33470337 AAAAATATTTT
1 AAAAATATTTT
33470348 AAAAATATTTT
1 AAAAATATTTT
33470359 AAAA
1 AAAA
33470363 TTAAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:33472215 original size:16 final size:16
Alignment explanation
Indices: 33472183--33472215 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
33472173 TTCGTACATA
33472183 ATTTTATAAATAGATT
1 ATTTTATAAATAGATT
33472199 ATTTTCATAAATA-ATT
1 ATTTT-ATAAATAGATT
33472215 A
1 A
33472216 AATTATTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (16 bp):
ATTTTATAAATAGATT
Found at i:33483030 original size:42 final size:42
Alignment explanation
Indices: 33482980--33483079 Score: 164
Period size: 42 Copynumber: 2.4 Consensus size: 42
33482970 CTATACGAAT
** *
33482980 GGCACTAAGTGTGCGAAATTAAAATGACGATATTGAATAACG
1 GGCACTAAGTGTGCGAAACAAAAATGACGATATCGAATAACG
*
33483022 GGCACTAAGTGTGCGAAACAAAAATGACGATGTCGAATAACG
1 GGCACTAAGTGTGCGAAACAAAAATGACGATATCGAATAACG
33483064 GGCACTAAGTGTGCGA
1 GGCACTAAGTGTGCGA
33483080 TACCAAGATC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 54 1.00
ACGTcount: A:0.38, C:0.15, G:0.27, T:0.20
Consensus pattern (42 bp):
GGCACTAAGTGTGCGAAACAAAAATGACGATATCGAATAACG
Found at i:33489922 original size:16 final size:16
Alignment explanation
Indices: 33489901--33489954 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 16
33489891 ATAATATGAA
33489901 TAAAATAATTTATTAT
1 TAAAATAATTTATTAT
33489917 TAAAATAA--TATTAGT
1 TAAAATAATTTATTA-T
* *
33489932 T-CAA-AATTAATTAT
1 TAAAATAATTTATTAT
33489946 TAAAATAAT
1 TAAAATAAT
33489955 ATGATCTGAG
Statistics
Matches: 30, Mismatches: 3, Indels: 10
0.70 0.07 0.23
Matches are distributed among these distances:
13 2 0.07
14 9 0.30
15 8 0.27
16 11 0.37
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (16 bp):
TAAAATAATTTATTAT
Found at i:33504725 original size:62 final size:63
Alignment explanation
Indices: 33504650--33505148 Score: 506
Period size: 62 Copynumber: 7.8 Consensus size: 63
33504640 AGTTTCAGGC
* * * ** *
33504650 TTTCAGCTAAAAGATAAAGCGATATAGCGTC-AAACTGAGTGAAAAAACATAAAGAAATTAAG
1 TTTCAGCTAAAAGATAAAGCTAAATAGCGTCAAAATTGAGTGAAAAAACATAAAGATTTTCAG
* * * *** *
33504712 TTTCAGCTAAAAGATAGAGCTGAATAGCATCAAAACCAAGTG-AAAAACATAAAAATTTTCAG
1 TTTCAGCTAAAAGATAAAGCTAAATAGCGTCAAAATTGAGTGAAAAAACATAAAGATTTTCAG
* * * *
33504774 TTTCAGATAAAAGATAAA-CTAAATAGCGTAAAAAATGAGTGAAAAAAAACATAATGATTTTCAG
1 TTTCAGCTAAAAGATAAAGCTAAATAGCGTCAAAATTGAGTG--AAAAAACATAAAGATTTTCAG
* *
33504838 TTTCAGCTAAAAGGTAAAGCTAAATAGCGTCAAAATTAAGTGAAAAAACA-AAACGATTTTCAG
1 TTTCAGCTAAAAGATAAAGCTAAATAGCGTCAAAATTGAGTGAAAAAACATAAA-GATTTTCAG
* * * * *
33504901 TTTCAGCTAAAAAGATAAAGCTAAATAGAGTCAAATTTTAGTTAAAAATACATTAAGATTTACAG
1 TTTCAGCT-AAAAGATAAAGCTAAATAGCGTCAAAATTGAGTGAAAAA-ACATAAAGA--T----
33504966 TTTCAG
58 TTTCAG
* ** *
33504972 ACTTTCAGCTCAAAGATAAAGCTAAATAGCGTCAAAATTTTGTGGAAAAAAAATAAAGATTTTCA
1 --TTTCAGCTAAAAGATAAAGCTAAATAGCGTCAAAATTGAGT-GAAAAAACATAAAGATTTTCA
33505037 G
63 G
* * *
33505038 -TTCAGATAAAAGATAAA-CTAAATAGCATCAAAATTGAGTGAAAAAGACGTAAAGATTTTCAG
1 TTTCAGCTAAAAGATAAAGCTAAATAGCGTCAAAATTGAGTGAAAAA-ACATAAAGATTTTCAG
* * *
33505100 TTTCAGTTAAAAGATAAAGATAAATAACGTCAAAATTGAGTGGAAAAAA
1 TTTCAGCTAAAAGATAAAGCTAAATAGCGTCAAAATTGAGT-GAAAAAA
33505149 TAATAAAATA
Statistics
Matches: 364, Mismatches: 51, Indels: 42
0.80 0.11 0.09
Matches are distributed among these distances:
61 23 0.06
62 93 0.26
63 64 0.18
64 88 0.24
65 31 0.09
66 8 0.02
67 1 0.00
70 1 0.00
71 6 0.02
72 36 0.10
73 13 0.04
ACGTcount: A:0.49, C:0.11, G:0.15, T:0.25
Consensus pattern (63 bp):
TTTCAGCTAAAAGATAAAGCTAAATAGCGTCAAAATTGAGTGAAAAAACATAAAGATTTTCAG
Found at i:33505021 original size:136 final size:134
Alignment explanation
Indices: 33504712--33505105 Score: 407
Period size: 136 Copynumber: 3.0 Consensus size: 134
33504702 AGAAATTAAG
* * * ** * *
33504712 TTTCAGCTAAAAGATAGAGCTGAATAGCATCAAAACCAAGTG--AAAAACATAAAAATTTTCAGT
1 TTTCAGCTAAAAGATAAAGCTAAATAGCGTCAAAATTAAGTGAAAAAAAAATAAAGATTTTCAG-
* * * * *
33504775 TTCAGATAAAAGATAAACTAAATAGCGTAAAAAATGAGTGAAAAAAAACATAATGA--T----TT
65 TTCAGATAAAAGATAAACTAAATAGCATCAAAATTGAGTG-AAAAAGACATAAAGATTTACAGTT
33504834 TCAG--
129 TCAGAC
* * *
33504838 TTTCAGCTAAAAGGTAAAGCTAAATAGCGTCAAAATTAAGTGAAAAAACAA-AACGATTTTCAGT
1 TTTCAGCTAAAAGATAAAGCTAAATAGCGTCAAAATTAAGTGAAAAAAAAATAAAGATTTTCAG-
* * * * * *
33504902 TTCAGCTAAAAAGATAAAGCTAAATAG-AGTCAAATTTTAGTTAAAAATACATTAAGATTTACAG
65 TTCAGAT-AAAAGATAAA-CTAAATAGCA-TCAAAATTGAGTGAAAAAGACATAAAGATTTACAG
33504966 TTTCAGAC
127 TTTCAGAC
* ** *
33504974 TTTCAGCTCAAAGATAAAGCTAAATAGCGTCAAAATTTTGTGGAAAAAAAATAAAGATTTTCAGT
1 TTTCAGCTAAAAGATAAAGCTAAATAGCGTCAAAATTAAGTGAAAAAAAAATAAAGATTTTCAGT
* *
33505039 TCAGATAAAAGATAAACTAAATAGCATCAAAATTGAGTGAAAAAGACGTAAAGATTTTCAGTTTC
66 TCAGATAAAAGATAAACTAAATAGCATCAAAATTGAGTGAAAAAGACATAAAGATTTACAGTTTC
33505104 AG
131 AG
33505106 TTAAAAGATA
Statistics
Matches: 218, Mismatches: 35, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
126 36 0.17
127 17 0.08
128 27 0.12
129 16 0.07
130 1 0.00
134 48 0.22
135 11 0.05
136 51 0.23
137 11 0.05
ACGTcount: A:0.48, C:0.11, G:0.15, T:0.26
Consensus pattern (134 bp):
TTTCAGCTAAAAGATAAAGCTAAATAGCGTCAAAATTAAGTGAAAAAAAAATAAAGATTTTCAGT
TCAGATAAAAGATAAACTAAATAGCATCAAAATTGAGTGAAAAAGACATAAAGATTTACAGTTTC
AGAC
Found at i:33505031 original size:72 final size:72
Alignment explanation
Indices: 33504901--33505043 Score: 184
Period size: 72 Copynumber: 2.0 Consensus size: 72
33504891 CGATTTTCAG
* * *
33504901 TTTCAGCTAAAAAGATAAAGCTAAATAGAGTCAAATTTTAGTTAAAAATACATTAAGATTTACAG
1 TTTCAGCTAAAAAGATAAAGCTAAATAGAGTCAAATTTTAGTGAAAAATAAATAAAGATTTACAG
33504966 TTTCAGAC
66 -TTCAGAC
* * *
33504974 TTTCAGCT-CAAAGATAAAGCTAAATAGCGTCAAAATTTT-GTGGAAAAA-AAATAAAGATTTTC
1 TTTCAGCTAAAAAGATAAAGCTAAATAGAGTC-AAATTTTAGT-GAAAAATAAATAAAGATTTAC
33505036 AGTTCAGA
64 AGTTCAGA
33505044 TAAAAGATAA
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
71 6 0.10
72 36 0.58
73 20 0.32
ACGTcount: A:0.45, C:0.11, G:0.14, T:0.30
Consensus pattern (72 bp):
TTTCAGCTAAAAAGATAAAGCTAAATAGAGTCAAATTTTAGTGAAAAATAAATAAAGATTTACAG
TTCAGAC
Found at i:33505143 original size:126 final size:127
Alignment explanation
Indices: 33504650--33505155 Score: 499
Period size: 126 Copynumber: 3.9 Consensus size: 127
33504640 AGTTTCAGGC
* * * * * ** *
33504650 TTTCAGCTAAAAGATAAAGCGATATAGCGTC-AAACTGAGTGAAAAAACATAAAGAAATTAAGTT
1 TTTCAGATAAAAGATAAAGCTAAATAGCATCAAAATTGAGTGAAAAAACATAAAGATTTTCAGTT
* * * ** *
33504714 TCAGCTAAAAGATAGAGCTGAATAGCATCAAAACCAAGTG-AAAAAC-ATAAAAATTTTCAG
66 TCAGCTAAAAGATAAAGCTAAATAGCGTCAAAATTAAGTGAAAAAACAATAAAGATTTTCAG
* * * *
33504774 TTTCAGATAAAAGATAAA-CTAAATAGCGTAAAAAATGAGTGAAAAAAAACATAATGATTTTCAG
1 TTTCAGATAAAAGATAAAGCTAAATAGCATCAAAATTGAGTG--AAAAAACATAAAGATTTTCAG
* *
33504838 TTTCAGCTAAAAGGTAAAGCTAAATAGCGTCAAAATTAAGTGAAAAAACAA-AACGATTTTCAG
64 TTTCAGCTAAAAGATAAAGCTAAATAGCGTCAAAATTAAGTGAAAAAACAATAAAGATTTTCAG
* * * * *
33504901 TTTCAGCTAAAAAGATAAAGCTAAATAG-AGTCAAATTTTAGTTAAAAATACATTAAGATTTACA
1 TTTCAGAT-AAAAGATAAAGCTAAATAGCA-TCAAAATTGAGTGAAAAA-ACATAAAGA--T---
* **
33504965 GTTTCAGACTTTCAGCTCAAAGATAAAGCTAAATAGCGTCAAAATTTTGTGGAAAAAA-AATAAA
58 -TTTCAG--TTTCAGCTAAAAGATAAAGCTAAATAGCGTCAAAATTAAGT-GAAAAAACAATAAA
33505029 GATTTTCAG
119 GATTTTCAG
*
33505038 -TTCAGATAAAAGATAAA-CTAAATAGCATCAAAATTGAGTGAAAAAGACGTAAAGATTTTCAGT
1 TTTCAGATAAAAGATAAAGCTAAATAGCATCAAAATTGAGTGAAAAA-ACATAAAGATTTTCAGT
* * * * *
33505101 TTCAGTTAAAAGATAAAGATAAATAACGTCAAAATTGAGTGGAAAAAATAATAAA
65 TTCAGCTAAAAGATAAAGCTAAATAGCGTCAAAATTAAGT-GAAAAAACAATAAA
33505156 ATAAAAATGA
Statistics
Matches: 317, Mismatches: 44, Indels: 39
0.79 0.11 0.10
Matches are distributed among these distances:
123 9 0.03
124 26 0.08
126 96 0.30
127 34 0.11
128 24 0.08
129 16 0.05
130 1 0.00
132 1 0.00
134 36 0.11
135 11 0.03
136 45 0.14
137 18 0.06
ACGTcount: A:0.49, C:0.10, G:0.15, T:0.25
Consensus pattern (127 bp):
TTTCAGATAAAAGATAAAGCTAAATAGCATCAAAATTGAGTGAAAAAACATAAAGATTTTCAGTT
TCAGCTAAAAGATAAAGCTAAATAGCGTCAAAATTAAGTGAAAAAACAATAAAGATTTTCAG
Found at i:33505552 original size:6 final size:6
Alignment explanation
Indices: 33505541--33505571 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
33505531 GATATAGTAA
33505541 GAAAGG GAAAGG GAAAGG GAAAGG GAAAGG G
1 GAAAGG GAAAGG GAAAGG GAAAGG GAAAGG G
33505572 CGTGGTTTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (6 bp):
GAAAGG
Found at i:33506858 original size:91 final size:91
Alignment explanation
Indices: 33506742--33507029 Score: 371
Period size: 91 Copynumber: 3.2 Consensus size: 91
33506732 AGTAACTATT
* *
33506742 CAATAACATGCCAGTTTG-TTCATAAGAGCTTTCCAACCAATAACATGCCAGATGCACATAGTGC
1 CAATAACACGCCAGATTGCTT-ATAAGAGCTTTCCAACCAATAACATGCCAGATGCACATAGTGC
*
33506806 AAAGCCCGTAGACTGAATATTCTCCCC
65 AAAGCCCGTAGGCTGAATATTCTCCCC
* * * *
33506833 CAATAACACGCCAGATTGCTTATAAGAGCTTTCCAACCGATAGCATGCCATACGCACATAGTGCA
1 CAATAACACGCCAGATTGCTTATAAGAGCTTTCCAACCAATAACATGCCAGATGCACATAGTGCA
* * *
33506898 AAGCCCATAGGTTGACTATTCTCCCC
66 AAGCCCGTAGGCTGAATATTCTCCCC
** * * * * * *
33506924 CAATAACACTTCATATTACTCATAAGAGCTTTCCAACCAATAACACGCTAGATGCACATAGTGTA
1 CAATAACACGCCAGATTGCTTATAAGAGCTTTCCAACCAATAACATGCCAGATGCACATAGTGCA
** *
33506989 AAGCTTGTAGGCTGAATTTTCTCCCC
66 AAGCCCGTAGGCTGAATATTCTCCCC
33507015 CAATAACACGCCAGA
1 CAATAACACGCCAGA
33507030 ATCTCCGAAG
Statistics
Matches: 165, Mismatches: 31, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
91 163 0.99
92 2 0.01
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (91 bp):
CAATAACACGCCAGATTGCTTATAAGAGCTTTCCAACCAATAACATGCCAGATGCACATAGTGCA
AAGCCCGTAGGCTGAATATTCTCCCC
Found at i:33516333 original size:4 final size:4
Alignment explanation
Indices: 33516283--33516317 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
33516273 AATCTATCCT
*
33516283 TTTA TTTA TTTA TTTA TTTC TTTA TTTA -TTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
33516318 ACTAATTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 3 0.11
4 25 0.89
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:33516579 original size:45 final size:43
Alignment explanation
Indices: 33516510--33516629 Score: 188
Period size: 45 Copynumber: 2.7 Consensus size: 43
33516500 ATTAGTTAAT
*
33516510 AAAAAAAAGCAAAAAGCGC-AAAAAAAAGTTGAGAAAAATCTAA
1 AAAAAAAAGCAAACAGCGCAAAAAAAAAGTTGAGAAAAATCT-A
*
33516553 AAAAAAAAGCAAACAGCGCAAAAAAAAAGAGTTGAGAAAAATCTT
1 AAAAAAAAGCAAACAGCGC-AAAAAAAA-AGTTGAGAAAAATCTA
33516598 AAAAAAAAGCAAACAGCGCAAAAAAAAAGTTG
1 AAAAAAAAGCAAACAGCGCAAAAAAAAAGTTG
33516630 CCTACCTCTC
Statistics
Matches: 72, Mismatches: 2, Indels: 6
0.90 0.03 0.08
Matches are distributed among these distances:
43 23 0.32
44 8 0.11
45 26 0.36
46 15 0.21
ACGTcount: A:0.65, C:0.11, G:0.15, T:0.09
Consensus pattern (43 bp):
AAAAAAAAGCAAACAGCGCAAAAAAAAAGTTGAGAAAAATCTA
Found at i:33522541 original size:29 final size:27
Alignment explanation
Indices: 33522492--33522550 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 27
33522482 AAATCTATCC
*
33522492 TTTTATTTATTTATTTATTATTTAACTAA
1 TTTTATTTATTTAGTTATTATTT--CTAA
*
33522521 TTTTATTTATTCTCGTT-TTATTTCTAA
1 TTTTATTTATT-TAGTTATTATTTCTAA
33522548 TTT
1 TTT
33522551 GTGTTTCTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 7 0.26
29 17 0.63
30 3 0.11
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.68
Consensus pattern (27 bp):
TTTTATTTATTTAGTTATTATTTCTAA
Found at i:33535806 original size:18 final size:19
Alignment explanation
Indices: 33535783--33535834 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
33535773 TCAAATCGTG
33535783 TTGTTCATTTTCAAAAT-A
1 TTGTTCATTTTCAAAATGA
*
33535801 TTGTTCATTTAC-AAATGA
1 TTGTTCATTTTCAAAATGA
* *
33535819 TTATTCAATTTCAAAA
1 TTGTTCATTTTCAAAA
33535835 CATTTATTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
17 4 0.14
18 21 0.75
19 3 0.11
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.46
Consensus pattern (19 bp):
TTGTTCATTTTCAAAATGA
Found at i:33542932 original size:21 final size:22
Alignment explanation
Indices: 33542902--33542943 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
33542892 CACTTCACAA
*
33542902 TCATAAGTCATACATCATCATC
1 TCATAAGTCAAACATCATCATC
33542924 TCAT-AGTCAAACATCATCAT
1 TCATAAGTCAAACATCATCAT
33542944 AAAGTCCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.38, C:0.26, G:0.05, T:0.31
Consensus pattern (22 bp):
TCATAAGTCAAACATCATCATC
Found at i:33545108 original size:42 final size:41
Alignment explanation
Indices: 33545015--33545164 Score: 187
Period size: 42 Copynumber: 3.6 Consensus size: 41
33545005 ACGTCATATC
* * *
33545015 CCAGATATTGTCTTACATGCTATCAT-ATATCGATGCCAATAG-
1 CCAGATATGGTCTTACACG-AATC-TCATATCGATGCCAAT-GT
*
33545057 CCAGTTATGGTCTTACACGAATCTCATATCGATGCCAATGT
1 CCAGATATGGTCTTACACGAATCTCATATCGATGCCAATGT
33545098 CCTAGATATGGTCTTACACGAATCTCATATCGATGCCAATGT
1 CC-AGATATGGTCTTACACGAATCTCATATCGATGCCAATGT
*
33545140 CCCAGACATGGTCTTACACGTAATC
1 -CCAGATATGGTCTTACACG-AATC
33545165 ATATCTCAGT
Statistics
Matches: 97, Mismatches: 6, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
40 2 0.02
41 19 0.20
42 70 0.72
43 6 0.06
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.31
Consensus pattern (41 bp):
CCAGATATGGTCTTACACGAATCTCATATCGATGCCAATGT
Found at i:33555362 original size:19 final size:19
Alignment explanation
Indices: 33555338--33555375 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
33555328 ATGGTGGAGA
33555338 AGAGGAACAAAGAACCAGC
1 AGAGGAACAAAGAACCAGC
33555357 AGAGGAACAAAGAACCAGC
1 AGAGGAACAAAGAACCAGC
33555376 GATGGGAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.21, G:0.26, T:0.00
Consensus pattern (19 bp):
AGAGGAACAAAGAACCAGC
Found at i:33571247 original size:43 final size:43
Alignment explanation
Indices: 33571194--33571403 Score: 253
Period size: 43 Copynumber: 4.9 Consensus size: 43
33571184 GTTTATGATA
*
33571194 AAAAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTACCC
1 AAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTACCC
*
33571237 AAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTGACCC
1 AAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTACCC
** *
33571280 TCAAACACCGCTAAAGAACATGATCTTTAGCGGCGCTTTACCC
1 AAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTACCC
* * * * * **
33571323 ACAAACGCCGCTAAAGATCAAGACCTTTAGCGACGCTTT-TTC
1 AAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTACCC
* * * *
33571365 ACAAACGCCGCTATAA-ATCATGACCTTTAGCGACGCTTT
1 AAAAACGCCGCTA-AAGAACATGATCTTTAGCGGCGCTTT
33571404 TCCACAAACG
Statistics
Matches: 151, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
42 36 0.24
43 115 0.76
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTACCC
Found at i:33571390 original size:42 final size:42
Alignment explanation
Indices: 33571196--33571446 Score: 227
Period size: 43 Copynumber: 5.9 Consensus size: 42
33571186 TTATGATAAA
* ** * * *
33571196 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTACCCAA
1 AAACGCCGCTAAAGATCATGACCTTTAGCGACGCTTT-TCCAC
* * * ** *
33571239 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTGACCCTC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGACGCTT-TTCCAC
* * * * *
33571282 AAACACCGCTAAAGAACATGATCTTTAGCGGCGCTTTACCCAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGACGCTTT-TCCAC
* *
33571325 AAACGCCGCTAAAGATCAAGACCTTTAGCGACGCTTTTTCAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGACGCTTTTCCAC
33571367 AAACGCCGCTATAA-ATCATGACCTTTAGCGACGCTTTTCCAC
1 AAACGCCGCTA-AAGATCATGACCTTTAGCGACGCTTTTCCAC
* * * *
33571409 AAACGCCAC-AAGAGCTCAAGACCTTTTAGCGATGCTTT
1 AAACGCCGCTAA-AGATCATGACC-TTTAGCGACGCTTT
33571447 GATTACAAAC
Statistics
Matches: 182, Mismatches: 20, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
40 1 0.01
41 2 0.01
42 55 0.30
43 124 0.68
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (42 bp):
AAACGCCGCTAAAGATCATGACCTTTAGCGACGCTTTTCCAC
Found at i:33571437 original size:85 final size:85
Alignment explanation
Indices: 33571196--33571464 Score: 260
Period size: 86 Copynumber: 3.1 Consensus size: 85
33571186 TTATGATAAA
** * * * * * *
33571196 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTACCCAAAAACGCCGCTAAAGAACATGAT
1 AAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTACCCACAAACGCCACTAAAGATCAAGAC
* * *
33571261 CTTTAGCGGCGCTTGACCCT-C
66 CTTTAGCGACGCTTTA--TTAC
* * * *
33571282 AAACACCGCTAAAGAACATGATCTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAGATCAAGAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTACCCACAAACGCCACTAAAGATCAAGAC
33571347 CTTTAGCGACGCTTT-TTCAC
66 CTTTAGCGACGCTTTATT-AC
* * *
33571367 AAACGCCGCTATAA-ATCATGACCTTTAGCGACGCTTT-TCCACAAACGCCAC-AAGAGCTCAAG
1 AAACGCCGCTA-AAGAACATGACCTTTAGCGACGCTTTACCCACAAACGCCACTAA-AGATCAAG
*
33571429 ACCTTTTAGCGATGCTTTGATTAC
64 ACC-TTTAGCGACGCTTT-ATTAC
*
33571453 AAACGCCACTAA
1 AAACGCCGCTAA
33571465 CTTTTTAAAA
Statistics
Matches: 158, Mismatches: 18, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
83 3 0.02
84 22 0.14
85 45 0.28
86 86 0.54
87 2 0.01
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.22
Consensus pattern (85 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTACCCACAAACGCCACTAAAGATCAAGAC
CTTTAGCGACGCTTTATTAC
Done.