Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 110 of 144
Found at i:34025272 original size:20 final size:21
Alignment explanation
Indices: 34025235--34025276 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
34025225 ATTTCCTTTG
34025235 TTATTTCATTTATTATTTTAT
1 TTATTTCATTTATTATTTTAT
*
34025256 TTATTTCGTTT-TTATTTTAT
1 TTATTTCATTTATTATTTTAT
34025276 T
1 T
34025277 CTTGTCCTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.74
Consensus pattern (21 bp):
TTATTTCATTTATTATTTTAT
Found at i:34033316 original size:54 final size:54
Alignment explanation
Indices: 34033234--34033341 Score: 189
Period size: 54 Copynumber: 2.0 Consensus size: 54
34033224 AAAGCTGCTC
* *
34033234 GGTTTTGTAGTCAACAAAAAGGGAATTGAGGTAAACCCCGATAAAGTTAAGGCT
1 GGTTTTGTAGTCAACAAAAAGAGAATTGAGGTAAACCCCGACAAAGTTAAGGCT
*
34033288 GGTTTTGTAGTCAACAAAAAGAGAATTGAGGTAGACCCCGACAAAGTTAAGGCT
1 GGTTTTGTAGTCAACAAAAAGAGAATTGAGGTAAACCCCGACAAAGTTAAGGCT
34033342 ATACAAAAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (54 bp):
GGTTTTGTAGTCAACAAAAAGAGAATTGAGGTAAACCCCGACAAAGTTAAGGCT
Found at i:34036689 original size:45 final size:45
Alignment explanation
Indices: 34036640--34036743 Score: 104
Period size: 45 Copynumber: 2.3 Consensus size: 45
34036630 AGTAGCAGTA
* *
34036640 GAGCAGATCAAAGACGGT-GAATCTTATCTCCATGTAGCGGCAATG
1 GAGCAGATCAAAGACAGTAG-ATCTTATCTCCATGGAGCGGCAATG
* * * ** *
34036685 GAGCAGA-CTAAAAATAGTAGATCTTATCTCCCTGGAGTTGCAGTG
1 GAGCAGATC-AAAGACAGTAGATCTTATCTCCATGGAGCGGCAATG
34036730 GAGCAGATCAAAGA
1 GAGCAGATCAAAGA
34036744 TAGCAAACCA
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
44 1 0.02
45 44 0.94
46 2 0.04
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (45 bp):
GAGCAGATCAAAGACAGTAGATCTTATCTCCATGGAGCGGCAATG
Found at i:34038265 original size:3 final size:3
Alignment explanation
Indices: 34038257--34038451 Score: 101
Period size: 3 Copynumber: 65.7 Consensus size: 3
34038247 GAGTTTATGT
* * *
34038257 TTA TTA TTA -TA TTTA TTA TTA TTT TTA GTA TTA TTA TT- TCTG TTA
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
* * * * * **
34038302 TTA TTG TTA CTA TTA TTT TTA TTA GTA TTA TTA TTA TTG TTA TTA CCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *** * *
34038350 CTA TTA TTG TTC TT- TTA TCA CTA CCG TCA TTA TTA TTA -TA GTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * *
34038396 TTA GTA TTA TTA TTG CTA TTA TTT TTA TTA TCA TTA TTT TTA TTA TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
34038444 TTA TTA TT
1 TTA TTA TT
34038452 TTTTTAAACC
Statistics
Matches: 142, Mismatches: 44, Indels: 12
0.72 0.22 0.06
Matches are distributed among these distances:
2 7 0.05
3 132 0.93
4 3 0.02
ACGTcount: A:0.27, C:0.07, G:0.05, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:34038580 original size:20 final size:21
Alignment explanation
Indices: 34038543--34038584 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
34038533 ATTTCCTTTG
34038543 TTATTTCATTTATTATTTTAT
1 TTATTTCATTTATTATTTTAT
*
34038564 TTATTTCGTTT-TTATTTTAT
1 TTATTTCATTTATTATTTTAT
34038584 T
1 T
34038585 CTTGTCCTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.74
Consensus pattern (21 bp):
TTATTTCATTTATTATTTTAT
Found at i:34040261 original size:21 final size:21
Alignment explanation
Indices: 34040237--34040284 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
34040227 TTCATAATGC
34040237 TTCTTATAAATAATATATTTT
1 TTCTTATAAATAATATATTTT
34040258 TTCTTATAAATAATATATTTT
1 TTCTTATAAATAATATATTTT
34040279 TTCTTA
1 TTCTTA
34040285 ACTTTTGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.58
Consensus pattern (21 bp):
TTCTTATAAATAATATATTTT
Found at i:34041589 original size:13 final size:14
Alignment explanation
Indices: 34041565--34041593 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
34041555 AATTATAAAA
34041565 AATATGTAATATAT
1 AATATGTAATATAT
34041579 AATAT-TAATATAT
1 AATATGTAATATAT
34041592 AA
1 AA
34041594 ACAGTAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.41
Consensus pattern (14 bp):
AATATGTAATATAT
Found at i:34042098 original size:14 final size:15
Alignment explanation
Indices: 34042064--34042099 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
34042054 CTTAACAAAT
34042064 ATTTTTACAAGATTC
1 ATTTTTACAAGATTC
*
34042079 ATTTTTACAATATTC
1 ATTTTTACAAGATTC
34042094 ATTTTT
1 ATTTTT
34042100 CTAAAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.31, C:0.11, G:0.03, T:0.56
Consensus pattern (15 bp):
ATTTTTACAAGATTC
Found at i:34045172 original size:25 final size:26
Alignment explanation
Indices: 34045130--34045183 Score: 101
Period size: 25 Copynumber: 2.1 Consensus size: 26
34045120 TAATAAACAG
34045130 ATTAGACATTTTTTTTACTATATTAT
1 ATTAGACATTTTTTTTACTATATTAT
34045156 ATTAGAC-TTTTTTTTACTATATTAT
1 ATTAGACATTTTTTTTACTATATTAT
34045181 ATT
1 ATT
34045184 CAAGGATGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 21 0.75
26 7 0.25
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.59
Consensus pattern (26 bp):
ATTAGACATTTTTTTTACTATATTAT
Found at i:34049931 original size:25 final size:25
Alignment explanation
Indices: 34049903--34049960 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
34049893 ATTTTACTTT
** *
34049903 TATTTATTGTATATATAAATAAATA
1 TATTTATTCAATATAAAAATAAATA
*
34049928 TATTTATTCAATATAAAAATAAATT
1 TATTTATTCAATATAAAAATAAATA
*
34049953 TATGTATT
1 TATTTATT
34049961 TATTTTTTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (25 bp):
TATTTATTCAATATAAAAATAAATA
Found at i:34058706 original size:23 final size:23
Alignment explanation
Indices: 34058676--34058729 Score: 108
Period size: 23 Copynumber: 2.3 Consensus size: 23
34058666 TATTTGTTAA
34058676 AAGGTTTATTTAGTAATTAAACT
1 AAGGTTTATTTAGTAATTAAACT
34058699 AAGGTTTATTTAGTAATTAAACT
1 AAGGTTTATTTAGTAATTAAACT
34058722 AAGGTTTA
1 AAGGTTTA
34058730 AATGGAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.39, C:0.04, G:0.15, T:0.43
Consensus pattern (23 bp):
AAGGTTTATTTAGTAATTAAACT
Found at i:34058739 original size:23 final size:23
Alignment explanation
Indices: 34058676--34058740 Score: 67
Period size: 23 Copynumber: 2.8 Consensus size: 23
34058666 TATTTGTTAA
** *
34058676 AAGGTTTATTTAGTAATTAAACT
1 AAGGTTTAAATAGAAATTAAACT
** *
34058699 AAGGTTTATTTAGTAATTAAACT
1 AAGGTTTAAATAGAAATTAAACT
*
34058722 AAGGTTTAAATGGAAATTA
1 AAGGTTTAAATAGAAATTA
34058741 GGCCATAGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.42, C:0.03, G:0.15, T:0.40
Consensus pattern (23 bp):
AAGGTTTAAATAGAAATTAAACT
Found at i:34071780 original size:21 final size:22
Alignment explanation
Indices: 34071746--34071787 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
34071736 TATTTTATCT
*
34071746 AAATTATTAGTAATTTAATGAC
1 AAATTATTAATAATTTAATGAC
*
34071768 AAATTA-TAATAATTTCATGA
1 AAATTATTAATAATTTAATGA
34071788 TTTATCATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.48, C:0.05, G:0.07, T:0.40
Consensus pattern (22 bp):
AAATTATTAATAATTTAATGAC
Found at i:34080329 original size:41 final size:41
Alignment explanation
Indices: 34080272--34080360 Score: 142
Period size: 41 Copynumber: 2.2 Consensus size: 41
34080262 TGAACTTAAG
** * *
34080272 GGTTTAGGGTCTTAGGTCTTGGGCATAATGTCTAGGTTTTA
1 GGTTTAGGGTCTTAGGTCTTGGGCATAAACTCCAAGTTTTA
34080313 GGTTTAGGGTCTTAGGTCTTGGGCATAAACTCCAAGTTTTA
1 GGTTTAGGGTCTTAGGTCTTGGGCATAAACTCCAAGTTTTA
34080354 GGTTTAG
1 GGTTTAG
34080361 TGTTTTAGCA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.19, C:0.11, G:0.30, T:0.39
Consensus pattern (41 bp):
GGTTTAGGGTCTTAGGTCTTGGGCATAAACTCCAAGTTTTA
Found at i:34081107 original size:13 final size:12
Alignment explanation
Indices: 34081087--34081123 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
34081077 TTGAAAAAAA
34081087 TTCAAAAAAATT
1 TTCAAAAAAATT
34081099 TTCACAAAAAATT
1 TTCA-AAAAAATT
*
34081112 TTTAAAAAAATT
1 TTCAAAAAAATT
34081124 AATAATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 12 0.52
13 11 0.48
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (12 bp):
TTCAAAAAAATT
Found at i:34083374 original size:24 final size:26
Alignment explanation
Indices: 34083328--34083466 Score: 96
Period size: 24 Copynumber: 5.4 Consensus size: 26
34083318 AAAATATTAA
*
34083328 ATAAAATAATAGAATGAATATAACAT
1 ATAATATAATAGAATGAATATAACAT
34083354 ATAATATAATAGAATG-A-ATAACAT
1 ATAATATAATAGAATGAATATAACAT
* * * *
34083378 ATAATA-ACATATAATATAATACAAAATT
1 ATAATATA-ATAGAAT-GAATATAACA-T
* *
34083406 ATAATA-AATTA-TATAAAATACTAA-AT
1 ATAATATAA-TAGAAT-GAATA-TAACAT
*
34083432 A-AA-ATAATAGATTGAATATAACAT
1 ATAATATAATAGAATGAATATAACAT
34083456 ATAATATAATA
1 ATAATATAATA
34083467 TAAAAAATCT
Statistics
Matches: 90, Mismatches: 11, Indels: 24
0.72 0.09 0.19
Matches are distributed among these distances:
23 4 0.04
24 29 0.32
25 8 0.09
26 24 0.27
27 13 0.14
28 12 0.13
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.31
Consensus pattern (26 bp):
ATAATATAATAGAATGAATATAACAT
Found at i:34083418 original size:28 final size:27
Alignment explanation
Indices: 34083377--34083431 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
34083367 ATGAATAACA
*
34083377 TATAATAACATATAATATAATACAAAAT
1 TATAATAACATAT-ATAAAATACAAAAT
*
34083405 TATAATAA-ATTATATAAAATACTAAAT
1 TATAATAACA-TATATAAAATACAAAAT
34083432 AAAATAATAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 13 0.54
28 11 0.46
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (27 bp):
TATAATAACATATATAAAATACAAAAT
Found at i:34083419 original size:102 final size:98
Alignment explanation
Indices: 34083309--34083494 Score: 293
Period size: 102 Copynumber: 1.9 Consensus size: 98
34083299 AACATAATAC
*
34083309 AAATTATATAAAATATTAAATAAAATAATAGAATGAATATAACATATAATATAATAGAATGAATA
1 AAATTATATAAAATACTAAATAAAATAATAGAATGAATATAACATATAATATAATAGAA--AA-A
34083374 A-CATATAATAACATATAATATAATACAAAATTATAAT
63 ATC-TATAATAACATATAA-ATAATACAAAATTATAAT
* *
34083411 AAATTATATAAAATACTAAATAAAATAATAGATTGAATATAACATATAATATAATATAAAAAATC
1 AAATTATATAAAATACTAAATAAAATAATAGAATGAATATAACATATAATATAATAGAAAAAATC
34083476 TATAATAACATATAAATAA
66 TATAATAACATATAAATAA
34083495 ATAAACAATA
Statistics
Matches: 80, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
98 4 0.05
99 17 0.21
100 3 0.04
102 56 0.70
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.31
Consensus pattern (98 bp):
AAATTATATAAAATACTAAATAAAATAATAGAATGAATATAACATATAATATAATAGAAAAAATC
TATAATAACATATAAATAATACAAAATTATAAT
Found at i:34083479 original size:21 final size:22
Alignment explanation
Indices: 34083455--34083496 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
34083445 GAATATAACA
34083455 TATAATATA-ATATAAA-AAATC
1 TATAATA-ACATATAAATAAATC
34083476 TATAATAACATATAAATAAAT
1 TATAATAACATATAAATAAAT
34083497 AAACAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.05
21 14 0.74
22 4 0.21
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (22 bp):
TATAATAACATATAAATAAATC
Found at i:34085081 original size:20 final size:20
Alignment explanation
Indices: 34085045--34085095 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
34085035 GATATATGTT
34085045 GATTAATTAAGTAAAACA-A
1 GATTAATTAAGTAAAACATA
34085064 GATTAATTAAGATAAAACATA
1 GATTAATTAAG-TAAAACATA
34085085 -ATTAATTAAGT
1 GATTAATTAAGT
34085096 TAATTAACCT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 12 0.40
20 17 0.57
21 1 0.03
ACGTcount: A:0.55, C:0.04, G:0.10, T:0.31
Consensus pattern (20 bp):
GATTAATTAAGTAAAACATA
Found at i:34088533 original size:43 final size:42
Alignment explanation
Indices: 34088470--34088589 Score: 161
Period size: 43 Copynumber: 2.8 Consensus size: 42
34088460 TATCGTACCA
*
34088470 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
* * *
34088512 ATGCCAATAGCCCAGCTATGGTCTTACACG-AATTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGTAA-TCTCATATCG
**
34088555 ATTTCATATCCCAGATATGGTCTTACATGTAATCT
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCT
34088590 TAGTAACCCT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
42 31 0.47
43 35 0.53
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
Found at i:34090753 original size:28 final size:29
Alignment explanation
Indices: 34090722--34090776 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
34090712 CTGAAATTCT
*
34090722 GATAT-CATGGCCCTAAGCCAAATCAGCC
1 GATATGCATGGCCCAAAGCCAAATCAGCC
*
34090750 GATATGCATGGCCCAAAGGCAAATCAG
1 GATATGCATGGCCCAAAGCCAAATCAG
34090777 TTTATCTCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.21
29 19 0.79
ACGTcount: A:0.35, C:0.27, G:0.22, T:0.16
Consensus pattern (29 bp):
GATATGCATGGCCCAAAGCCAAATCAGCC
Found at i:34094586 original size:19 final size:19
Alignment explanation
Indices: 34094532--34094594 Score: 60
Period size: 20 Copynumber: 3.4 Consensus size: 19
34094522 CTAAAAAAAT
*
34094532 TAATTTTTATACTTTTTGAA
1 TAATTTTTATA-TTTTTCAA
* *
34094552 TAATTTTTAAAATTTTCAA
1 TAATTTTTATATTTTTCAA
34094571 TAAATTTTT-TATTTTT-AA
1 T-AATTTTTATATTTTTCAA
34094589 -AATTTT
1 TAATTTT
34094595 AAAAAATTAA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
16 6 0.16
18 2 0.05
19 12 0.32
20 17 0.46
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.60
Consensus pattern (19 bp):
TAATTTTTATATTTTTCAA
Found at i:34103940 original size:50 final size:50
Alignment explanation
Indices: 34103872--34103972 Score: 184
Period size: 50 Copynumber: 2.0 Consensus size: 50
34103862 CATTCATTTC
* *
34103872 GGAAGATCACATATATTCAGTGTAATTCAGTATTCCTTTATCCCATTTTG
1 GGAAGAGCACATATATTCAGTGGAATTCAGTATTCCTTTATCCCATTTTG
34103922 GGAAGAGCACATATATTCAGTGGAATTCAGTATTCCTTTATCCCATTTTG
1 GGAAGAGCACATATATTCAGTGGAATTCAGTATTCCTTTATCCCATTTTG
34103972 G
1 G
34103973 TTATTTCCTA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.38
Consensus pattern (50 bp):
GGAAGAGCACATATATTCAGTGGAATTCAGTATTCCTTTATCCCATTTTG
Found at i:34109889 original size:13 final size:13
Alignment explanation
Indices: 34109873--34109941 Score: 84
Period size: 13 Copynumber: 5.2 Consensus size: 13
34109863 TTATAGAAAC
34109873 TTCATATAACCAT
1 TTCATATAACCAT
* *
34109886 TTCATATATCTAT
1 TTCATATAACCAT
*
34109899 TTCCATATAAACAT
1 TT-CATATAACCAT
*
34109913 TTCATATATCCAT
1 TTCATATAACCAT
*
34109926 TTCATATTACCAT
1 TTCATATAACCAT
34109939 TTC
1 TTC
34109942 TGCTTGCTCA
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
13 36 0.78
14 10 0.22
ACGTcount: A:0.33, C:0.22, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCATATAACCAT
Found at i:34109913 original size:27 final size:26
Alignment explanation
Indices: 34109873--34109941 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 26
34109863 TTATAGAAAC
*
34109873 TTCATATAACCATTTCATATATCTAT
1 TTCATATAACCATTTCATATATCCAT
*
34109899 TTCCATATAAACATTTCATATATCCAT
1 TT-CATATAACCATTTCATATATCCAT
*
34109926 TTCATATTACCATTTC
1 TTCATATAACCATTTC
34109942 TGCTTGCTCA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
26 14 0.37
27 24 0.63
ACGTcount: A:0.33, C:0.22, G:0.00, T:0.45
Consensus pattern (26 bp):
TTCATATAACCATTTCATATATCCAT
Found at i:34110373 original size:30 final size:30
Alignment explanation
Indices: 34110338--34110394 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
34110328 GGGCACTTCT
* * *
34110338 ACACGGGTGATCCACACGCTCGTGTGTGAC
1 ACACGGGTAAACCAAACGCTCGTGTGTGAC
*
34110368 ACACGGGTAAACCAAATGCTCGTGTGT
1 ACACGGGTAAACCAAACGCTCGTGTGT
34110395 CATGGCCGTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.25, C:0.26, G:0.28, T:0.21
Consensus pattern (30 bp):
ACACGGGTAAACCAAACGCTCGTGTGTGAC
Found at i:34117588 original size:13 final size:12
Alignment explanation
Indices: 34117570--34117613 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 12
34117560 ATTCATTTAG
34117570 CATTTCATATATT
1 CATTTCA-ATATT
34117583 CATTTCAAGTATT
1 CATTTCAA-TATT
*
34117596 CATTCCAAATATT
1 CATTTC-AATATT
34117609 CATTT
1 CATTT
34117614 TCACATAACT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 1 0.04
13 24 0.89
14 2 0.07
ACGTcount: A:0.32, C:0.18, G:0.02, T:0.48
Consensus pattern (12 bp):
CATTTCAATATT
Found at i:34126449 original size:20 final size:20
Alignment explanation
Indices: 34126420--34126464 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
34126410 AGCACATGTA
* *
34126420 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
34126440 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
34126460 TTCAT
1 TTCAT
34126465 TTTATTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:34129971 original size:50 final size:50
Alignment explanation
Indices: 34129886--34130100 Score: 236
Period size: 50 Copynumber: 4.3 Consensus size: 50
34129876 GCTAAATGAC
* * * * *
34129886 CTTGTATATTCGGCCACATAGGTATGTACATATGTGATGTTGTATTGGAT
1 CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTATATTGGAT
* * * * *
34129936 CTTGAATATTCGGCCATGA-AGGTATGCACAAATGTGATATTATGTTTGAAT
1 CTTGTATATTCGGCCAT-ATAGGTAAGCACATATGTGATATTAT-ATTGGAT
* * * *
34129987 -TTGTATATTCGGCCATATAAGTAAGTACATATGTGATATTAAATTTGAT
1 CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTATATTGGAT
* * *
34130036 CTTGCATATTCGGCCATTTAGGTAAGCACATATGTGATATTATATTTGAT
1 CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTATATTGGAT
*
34130086 CTTGTATATTTGGCC
1 CTTGTATATTCGGCC
34130101 CAATGAGTGA
Statistics
Matches: 137, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
49 5 0.04
50 126 0.92
51 6 0.04
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.40
Consensus pattern (50 bp):
CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTATATTGGAT
Found at i:34130065 original size:100 final size:100
Alignment explanation
Indices: 34129886--34130100 Score: 288
Period size: 100 Copynumber: 2.1 Consensus size: 100
34129876 GCTAAATGAC
* * * **
34129886 CTTGTATATTCGGCCACATAGGTATGTACATATGTGATGTTGTATTGGATCTTGAATATTCGGCC
1 CTTGTATATTCGGCCACATAAGTAAGTACATATGTGATATTAAATTGGATCTTGAATATTCGGCC
* *
34129951 ATGAAGGTATGCACAAATGTGATATTATGTTTGAAT
66 ATGAAGGTAAGCACAAATGTGATATTATATTTG-AT
* * *
34129987 -TTGTATATTCGGCCATATAAGTAAGTACATATGTGATATTAAATTTGATCTTGCATATTCGGCC
1 CTTGTATATTCGGCCACATAAGTAAGTACATATGTGATATTAAATTGGATCTTGAATATTCGGCC
** *
34130051 ATTTAGGTAAGCACATATGTGATATTATATTTGAT
66 ATGAAGGTAAGCACAAATGTGATATTATATTTGAT
*
34130086 CTTGTATATTTGGCC
1 CTTGTATATTCGGCC
34130101 CAATGAGTGA
Statistics
Matches: 99, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
99 2 0.02
100 97 0.98
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.40
Consensus pattern (100 bp):
CTTGTATATTCGGCCACATAAGTAAGTACATATGTGATATTAAATTGGATCTTGAATATTCGGCC
ATGAAGGTAAGCACAAATGTGATATTATATTTGAT
Found at i:34144872 original size:18 final size:18
Alignment explanation
Indices: 34144808--34144875 Score: 77
Period size: 18 Copynumber: 3.8 Consensus size: 18
34144798 ATAAGTGACA
*
34144808 TTTTGAAAATTAATAACG
1 TTTTGAAAATGAATAACG
*
34144826 TTTTGAAAGA-GTATAAC-
1 TTTTGAAA-ATGAATAACG
*
34144843 TTTGTGATAATGAATAACG
1 TTT-TGAAAATGAATAACG
34144862 TTTTGAAAATGAAT
1 TTTTGAAAATGAAT
34144876 GACACGTTCT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
17 4 0.10
18 33 0.80
19 4 0.10
ACGTcount: A:0.41, C:0.04, G:0.16, T:0.38
Consensus pattern (18 bp):
TTTTGAAAATGAATAACG
Found at i:34145742 original size:94 final size:94
Alignment explanation
Indices: 34145581--34145768 Score: 358
Period size: 94 Copynumber: 2.0 Consensus size: 94
34145571 AAATTTTTGG
34145581 ACATAGTTTATGTTGAATTAATTGATGAATTAGGGGTTGAATGAAGAGAATTTCAAGTTAAAATT
1 ACATAGTTTATGTTGAATTAATTGATGAATTAGGGGTTGAATGAAGAGAATTTCAAGTTAAAATT
34145646 GGGTAAAGGATTAGATTGAATGAATTTCA
66 GGGTAAAGGATTAGATTGAATGAATTTCA
* *
34145675 ACATAGTTTATGTTGAATTAATTGATGAATTAGGGGTTGAATTAAGAGAATTTCAAGTTAGAATT
1 ACATAGTTTATGTTGAATTAATTGATGAATTAGGGGTTGAATGAAGAGAATTTCAAGTTAAAATT
34145740 GGGTAAAGGATTAGATTGAATGAATTTCA
66 GGGTAAAGGATTAGATTGAATGAATTTCA
34145769 TTTTTTTTCG
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 92 1.00
ACGTcount: A:0.38, C:0.03, G:0.23, T:0.36
Consensus pattern (94 bp):
ACATAGTTTATGTTGAATTAATTGATGAATTAGGGGTTGAATGAAGAGAATTTCAAGTTAAAATT
GGGTAAAGGATTAGATTGAATGAATTTCA
Found at i:34149385 original size:37 final size:37
Alignment explanation
Indices: 34149332--34149434 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
34149322 CGAATAGTCC
*
34149332 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
34149369 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
34149406 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
34149435 ATATATTTCC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:34149710 original size:48 final size:48
Alignment explanation
Indices: 34149575--34149720 Score: 247
Period size: 48 Copynumber: 3.0 Consensus size: 48
34149565 ATATACACAC
* * *
34149575 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
34149623 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
34149671 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
34149719 AT
1 AT
34149721 ATTTGTCTTG
Statistics
Matches: 93, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 93 1.00
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:34160591 original size:13 final size:13
Alignment explanation
Indices: 34160573--34160598 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34160563 CCATGTGGCA
34160573 CACATGGCCATGT
1 CACATGGCCATGT
34160586 CACATGGCCATGT
1 CACATGGCCATGT
34160599 GCGATCTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.23
Consensus pattern (13 bp):
CACATGGCCATGT
Found at i:34160889 original size:18 final size:18
Alignment explanation
Indices: 34160866--34160901 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
34160856 GCCAGGGGCA
34160866 AGCCCGTGTGTCGTGGCC
1 AGCCCGTGTGTCGTGGCC
34160884 AGCCCGTGTGTCGTGGCC
1 AGCCCGTGTGTCGTGGCC
34160902 GTGTGGGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.06, C:0.33, G:0.39, T:0.22
Consensus pattern (18 bp):
AGCCCGTGTGTCGTGGCC
Found at i:34162855 original size:17 final size:18
Alignment explanation
Indices: 34162807--34162863 Score: 89
Period size: 18 Copynumber: 3.2 Consensus size: 18
34162797 TTGGGTTGGG
*
34162807 ATGGGTCGTGTGGGCCCA
1 ATGGGTCATGTGGGCCCA
34162825 ATGGGTCATGTGGGCCCA
1 ATGGGTCATGTGGGCCCA
*
34162843 ATGGG-CCTGTGGGCCCA
1 ATGGGTCATGTGGGCCCA
34162860 ATGG
1 ATGG
34162864 ATAAATTGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
17 15 0.41
18 22 0.59
ACGTcount: A:0.14, C:0.23, G:0.42, T:0.21
Consensus pattern (18 bp):
ATGGGTCATGTGGGCCCA
Found at i:34162947 original size:27 final size:27
Alignment explanation
Indices: 34162917--34162970 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
34162907 GAATCTCATA
* *
34162917 TCTGT-AGGCTAGTATTACTGAAATACC
1 TCTGTAAGG-TAGAATTACTAAAATACC
34162944 TCTGTAAGGTAGAATTACTAAAATACC
1 TCTGTAAGGTAGAATTACTAAAATACC
34162971 CTTGGTTTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 21 0.88
28 3 0.12
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (27 bp):
TCTGTAAGGTAGAATTACTAAAATACC
Found at i:34162986 original size:27 final size:27
Alignment explanation
Indices: 34162956--34163325 Score: 207
Period size: 27 Copynumber: 13.7 Consensus size: 27
34162946 TGTAAGGTAG
* *
34162956 AATTACTAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGGTTTATAA
** *
34162983 AATTA-CTGAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGGTTTATAA
** *** *
34163009 AATTACCAAAATGTCC-TCAATTAGCAA
1 AATTACCAAAATACCCTTGGTTTA-TAA
* *
34163036 AATTACCAAAATACCATTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
34163063 AATTACCAAAATA-CCTCTAGTTTGTAA
1 AATTACCAAAATACCCT-TGGTTTATAA
* * * *
34163090 AATTACCAAAATACCTTTGATTTGTGA
1 AATTACCAAAATACCCTTGGTTTATAA
* * * **
34163117 AATTATCGAAATACCCTCGGCCTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * * * *
34163144 AATTATCGAAATACTC-TCGTCTTGTAA
1 AATTACCAAAATACCCTTGGT-TTATAA
* ** * *
34163171 AATTGCTGAAATACCCTTGATTTAGAA
1 AATTACCAAAATACCCTTGGTTTATAA
* **
34163198 AATTA-CAGAAATACCCCTAATTTATAA
1 AATTACCA-AAATACCCTTGGTTTATAA
*
34163225 AATTA-CAAGAATACCCTTGACTTCTA-AA
1 AATTACCAA-AATACCCTTG-GTT-TATAA
* **
34163253 AATTA-CAGAAATACCATTGGTTTGCAA
1 AATTACCA-AAATACCCTTGGTTTATAA
* *
34163280 AATTACCAAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTGGTTTATAA
* *
34163307 ATTTACCAAAACACCCTTG
1 AATTACCAAAATACCCTTG
34163326 TAGGGTGAAA
Statistics
Matches: 265, Mismatches: 64, Indels: 28
0.74 0.18 0.08
Matches are distributed among these distances:
26 32 0.12
27 201 0.76
28 29 0.11
29 3 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:34163282 original size:55 final size:54
Alignment explanation
Indices: 34163179--34163298 Score: 145
Period size: 55 Copynumber: 2.2 Consensus size: 54
34163169 AAAATTGCTG
* *
34163179 AAATACCCTTGATTTAGAAAATTACAGAAATACCCCTAATTTATAAAATTA-CA
1 AAATACCCTTGATTTAGAAAATTACAGAAATACCACTAATTTACAAAATTACCA
* ** *
34163232 AGAATACCCTTGACTTCTA-AAAATTACAGAAATACCATTGGTTTGCAAAATTACCA
1 A-AATACCCTTGA-TT-TAGAAAATTACAGAAATACCACTAATTTACAAAATTACCA
34163288 AAATACCCTTG
1 AAATACCCTTG
34163299 GTTTGTAGAT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
53 1 0.02
54 11 0.19
55 40 0.70
56 5 0.09
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.29
Consensus pattern (54 bp):
AAATACCCTTGATTTAGAAAATTACAGAAATACCACTAATTTACAAAATTACCA
Found at i:34163843 original size:22 final size:22
Alignment explanation
Indices: 34163797--34163844 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
34163787 GTTGATGTGA
* *
34163797 TGTTTACGGCTATGTGTTTTCC
1 TGTTTACAGCTATGAGTTTTCC
34163819 TGTTTACAGCTATGAGTTGTT-C
1 TGTTTACAGCTATGAGTT-TTCC
34163841 TGTT
1 TGTT
34163845 GACTTAGTGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.12, C:0.15, G:0.23, T:0.50
Consensus pattern (22 bp):
TGTTTACAGCTATGAGTTTTCC
Found at i:34164082 original size:246 final size:246
Alignment explanation
Indices: 34163648--34164140 Score: 986
Period size: 246 Copynumber: 2.0 Consensus size: 246
34163638 ACTCTGTGTC
34163648 AATCACATTTACCTAGGGCTATGTGCCAGTTATGTTACTCTAGTTGATGGCTATGTGCCTAACAT
1 AATCACATTTACCTAGGGCTATGTGCCAGTTATGTTACTCTAGTTGATGGCTATGTGCCTAACAT
34163713 AATGCTGTTATCGATGGCTTTGTGCCATTGTGCCATTCTGCTTACGGCTTCCAGTAGTCCTGTTA
66 AATGCTGTTATCGATGGCTTTGTGCCATTGTGCCATTCTGCTTACGGCTTCCAGTAGTCCTGTTA
34163778 TTTGGCAGCGTTGATGTGATGTTTACGGCTATGTGTTTTCCTGTTTACAGCTATGAGTTGTTCTG
131 TTTGGCAGCGTTGATGTGATGTTTACGGCTATGTGTTTTCCTGTTTACAGCTATGAGTTGTTCTG
34163843 TTGACTTAGTGCCGCAACTGGTGCTAACATTGTAAGTGTAGGGATGGTGCG
196 TTGACTTAGTGCCGCAACTGGTGCTAACATTGTAAGTGTAGGGATGGTGCG
34163894 AATCACATTTACCTAGGGCTATGTGCCAGTTATGTTACTCTAGTTGATGGCTATGTGCCTAACAT
1 AATCACATTTACCTAGGGCTATGTGCCAGTTATGTTACTCTAGTTGATGGCTATGTGCCTAACAT
34163959 AATGCTGTTATCGATGGCTTTGTGCCATTGTGCCATTCTGCTTACGGCTTCCAGTAGTCCTGTTA
66 AATGCTGTTATCGATGGCTTTGTGCCATTGTGCCATTCTGCTTACGGCTTCCAGTAGTCCTGTTA
34164024 TTTGGCAGCGTTGATGTGATGTTTACGGCTATGTGTTTTCCTGTTTACAGCTATGAGTTGTTCTG
131 TTTGGCAGCGTTGATGTGATGTTTACGGCTATGTGTTTTCCTGTTTACAGCTATGAGTTGTTCTG
34164089 TTGACTTAGTGCCGCAACTGGTGCTAACATTGTAAGTGTAGGGATGGTGCG
196 TTGACTTAGTGCCGCAACTGGTGCTAACATTGTAAGTGTAGGGATGGTGCG
34164140 A
1 A
34164141 GTGATTTATT
Statistics
Matches: 247, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
246 247 1.00
ACGTcount: A:0.19, C:0.18, G:0.26, T:0.37
Consensus pattern (246 bp):
AATCACATTTACCTAGGGCTATGTGCCAGTTATGTTACTCTAGTTGATGGCTATGTGCCTAACAT
AATGCTGTTATCGATGGCTTTGTGCCATTGTGCCATTCTGCTTACGGCTTCCAGTAGTCCTGTTA
TTTGGCAGCGTTGATGTGATGTTTACGGCTATGTGTTTTCCTGTTTACAGCTATGAGTTGTTCTG
TTGACTTAGTGCCGCAACTGGTGCTAACATTGTAAGTGTAGGGATGGTGCG
Found at i:34164089 original size:22 final size:22
Alignment explanation
Indices: 34164043--34164090 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
34164033 GTTGATGTGA
* *
34164043 TGTTTACGGCTATGTGTTTTCC
1 TGTTTACAGCTATGAGTTTTCC
34164065 TGTTTACAGCTATGAGTTGTT-C
1 TGTTTACAGCTATGAGTT-TTCC
34164087 TGTT
1 TGTT
34164091 GACTTAGTGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.12, C:0.15, G:0.23, T:0.50
Consensus pattern (22 bp):
TGTTTACAGCTATGAGTTTTCC
Found at i:34169591 original size:42 final size:42
Alignment explanation
Indices: 34169539--34169630 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
34169529 TGGCCCTTAG
* * ** *
34169539 GCCCCTTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
34169581 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
34169623 GCCCATTT
1 GCCCATTT
34169631 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:34169806 original size:25 final size:25
Alignment explanation
Indices: 34169778--34169846 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
34169768 CTCTTTAAAT
*
34169778 AACTGGGGCAAAGCCCTTT-CTGATA
1 AACTGGGGCAGAGCCCTTTAC-GATA
* *
34169803 AACTGAGGCAGAGCCCTTTACGGTA
1 AACTGGGGCAGAGCCCTTTACGATA
*
34169828 AACTGGGGTAGAGCCCTTT
1 AACTGGGGCAGAGCCCTTT
34169847 TAGCACTTCC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
25 37 0.97
26 1 0.03
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (25 bp):
AACTGGGGCAGAGCCCTTTACGATA
Found at i:34170692 original size:27 final size:27
Alignment explanation
Indices: 34170631--34170694 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
34170621 GGCGTATTCA
34170631 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCATACAAGGGTATTACGG
* * *
34170658 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTACCATACAAGGG-TATTACGG
*
34170685 TCTTTTTACC
1 TCATTTTACC
34170695 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGTATTACGG
Found at i:34170778 original size:27 final size:27
Alignment explanation
Indices: 34170748--34170846 Score: 92
Period size: 27 Copynumber: 3.6 Consensus size: 27
34170738 GTAAATCTAC
*
34170748 AAACCAAGGGTATTTCAATAATTTTGT
1 AAACCAAGGGTATTTCTATAATTTTGT
* *
34170775 AAACCAATGGTATTCCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
* *
34170801 AAAAAAGTCAAGGGTATTTCTGTAATTTTGT
1 ---AAA-CCAAGGGTATTTCTATAATTTTGT
* *
34170832 AAATCAGGGGTATTT
1 AAACCAAGGGTATTT
34170847 TGGTAATTTT
Statistics
Matches: 59, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
26 1 0.02
27 33 0.56
28 3 0.05
29 3 0.05
30 18 0.31
31 1 0.02
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.38
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:34170852 original size:27 final size:26
Alignment explanation
Indices: 34170812--34170908 Score: 81
Period size: 27 Copynumber: 3.6 Consensus size: 26
34170802 AAAAAGTCAA
*
34170812 GGGTATTTCT-GTAATTTTGTAAATCAG
1 GGGTATTT-TGGTAATTTT-CAAATCAG
*
34170839 GGGTATTTTGGTAATTTTACAAAT-TG
1 GGGTATTTTGGTAATTTT-CAAATCAG
* * *
34170865 AGGGTATTTCGATAATTTCTCAAACCAG
1 -GGGTATTTTGGTAATTT-TCAAATCAG
*
34170893 TGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
34170909 CTATCCTACA
Statistics
Matches: 56, Mismatches: 10, Indels: 8
0.76 0.14 0.11
Matches are distributed among these distances:
26 2 0.04
27 52 0.93
28 2 0.04
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.43
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTCAAATCAG
Found at i:34170974 original size:27 final size:27
Alignment explanation
Indices: 34170940--34171031 Score: 132
Period size: 27 Copynumber: 3.4 Consensus size: 27
34170930 ATAATTTCAC
*
34170940 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAATGATAATTTTGTA
*
34170967 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGATAATTTTGTA
* *
34170994 AATCGAGGGTAAAATGATAATTCTATA
1 AATCGAGGGTAAAATGATAATTTTGTA
34171021 AATCGAGGGTA
1 AATCGAGGGTA
34171032 CTTTGGTAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
26 1 0.02
27 56 0.97
28 1 0.02
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGATAATTTTGTA
Found at i:34171056 original size:54 final size:53
Alignment explanation
Indices: 34170931--34171058 Score: 134
Period size: 54 Copynumber: 2.4 Consensus size: 53
34170921 GGTATTTCAA
* * *
34170931 TAATTTCACAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTAAAATGG
1 TAATTTTACAATCGAGGGTAAAACGATAATTCTATAAACTGAGGGTAAAATGG
* ***
34170984 TAATTTTGTA-AATCGAGGGTAAAATGATAATTCTATAAA-TCGAGGGTACTTTGG
1 TAA-TTT-TACAATCGAGGGTAAAACGATAATTCTATAAACT-GAGGGTAAAATGG
*
34171038 TAATTTTACAAGTTGAGGGTA
1 TAATTTTACAA-TCGAGGGTA
34171059 TTTCAGTAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 9
0.78 0.10 0.11
Matches are distributed among these distances:
52 2 0.03
53 9 0.15
54 50 0.81
55 1 0.02
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.33
Consensus pattern (53 bp):
TAATTTTACAATCGAGGGTAAAACGATAATTCTATAAACTGAGGGTAAAATGG
Found at i:34173001 original size:59 final size:59
Alignment explanation
Indices: 34172899--34173030 Score: 201
Period size: 59 Copynumber: 2.2 Consensus size: 59
34172889 ATAAACCGAT
* * **
34172899 TAATTGTATCGTTGCGTTATTTTGAAAACAATTATCATTTTGGAAACACGGCCTAGGTC
1 TAATCGTATTGTTGCGTTATTTTGAAAACAATTATCATTTTGGAAACACACCCTAGGTC
*
34172958 TAATCGTATTGTTGCGTTATTTTGAAAACAATTATCATTTTGGAAACGCACCCTAGGTC
1 TAATCGTATTGTTGCGTTATTTTGAAAACAATTATCATTTTGGAAACACACCCTAGGTC
*
34173017 TAACTCATATTGTT
1 TAA-TCGTATTGTT
34173031 ATAAAAAAAT
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
59 57 0.86
60 9 0.14
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.39
Consensus pattern (59 bp):
TAATCGTATTGTTGCGTTATTTTGAAAACAATTATCATTTTGGAAACACACCCTAGGTC
Found at i:34173351 original size:54 final size:53
Alignment explanation
Indices: 34173290--34173397 Score: 189
Period size: 54 Copynumber: 2.0 Consensus size: 53
34173280 TAACAAACAA
34173290 ACAGTGAAAACACAGTATCAGTACAATCTGGGCCAAAGCCCTATTTAGTCTTG
1 ACAGTGAAAACACAGTATCAGTACAATCTGGGCCAAAGCCCTATTTAGTCTTG
* *
34173343 ACNAGTGAAAACACAGTGTCCGTACAATCTGGGCCAAAGCCCTATTTAGTCTTG
1 AC-AGTGAAAACACAGTATCAGTACAATCTGGGCCAAAGCCCTATTTAGTCTTG
34173397 A
1 A
34173398 TATATACTGG
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
53 2 0.04
54 50 0.96
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.24
Consensus pattern (53 bp):
ACAGTGAAAACACAGTATCAGTACAATCTGGGCCAAAGCCCTATTTAGTCTTG
Found at i:34174357 original size:31 final size:31
Alignment explanation
Indices: 34174319--34174393 Score: 132
Period size: 31 Copynumber: 2.4 Consensus size: 31
34174309 ACGGTTACTA
*
34174319 GGCCGAAGCCTTTTCATAAATCATATCACTG
1 GGCCGAAGCCTTTTCATAAATCATATCACTC
34174350 GGCCGAAGCCTTTTCATAAATCATATCACTC
1 GGCCGAAGCCTTTTCATAAATCATATCACTC
*
34174381 GGCCAAAGCCTTT
1 GGCCGAAGCCTTT
34174394 ACTATAAACG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (31 bp):
GGCCGAAGCCTTTTCATAAATCATATCACTC
Found at i:34174476 original size:42 final size:42
Alignment explanation
Indices: 34174417--34174508 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
34174407 TGGCCCTTAG
* ** * *
34174417 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATTCAA
1 GCCCATTTCAATATCACATGAAATCCCAATGAATGTATGCAA
34174459 GCCCATTTCAATATCACATGAAATCCCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATCCCAATGAATGTATGCAA
34174501 GCCCATTT
1 GCCCATTT
34174509 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATCCCAATGAATGTATGCAA
Found at i:34174669 original size:24 final size:24
Alignment explanation
Indices: 34174642--34174700 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 24
34174632 ACTGGAGCCT
34174642 AGCCTCTTTTAAT-AACTGGGGCAG
1 AGCC-CTTTTAATAAACTGGGGCAG
**
34174666 AGCCCTTTTCGGTAAACTGGGGCAG
1 AGCCCTTTT-AATAAACTGGGGCAG
34174691 AGCCCTTTTA
1 AGCCCTTTTA
34174701 GCACTTCCTC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 5 0.17
24 5 0.17
25 20 0.67
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAG
Found at i:34175764 original size:30 final size:30
Alignment explanation
Indices: 34175719--34175807 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
34175709 CAAAGATAAC
34175719 AAGAAAACCA-AATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
34175748 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * * *
34175778 AAGAGATCTAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
34175808 TGATACTATG
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
29 10 0.20
30 37 0.76
31 2 0.04
ACGTcount: A:0.58, C:0.15, G:0.16, T:0.11
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:34175767 original size:15 final size:15
Alignment explanation
Indices: 34175719--34175798 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
34175709 CAAAGATAAC
*
34175719 AAGAAAACCA-AATA
1 AAGAAATCCAGAATA
34175733 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
34175748 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
34175763 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* * *
34175778 AAGAGATCTAGGATA
1 AAGAAATCCAGAATA
34175793 AAGAAA
1 AAGAAA
34175799 CCCAAGATAT
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
14 10 0.18
15 44 0.80
16 1 0.02
ACGTcount: A:0.60, C:0.12, G:0.16, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:34175807 original size:15 final size:15
Alignment explanation
Indices: 34175719--34175807 Score: 76
Period size: 15 Copynumber: 6.0 Consensus size: 15
34175709 CAAAGATAAC
*
34175719 AAGAAAACCAA-ATA
1 AAGAAATCCAAGATA
34175733 AAGAAATCCAAGATA
1 AAGAAATCCAAGATA
* *
34175748 GAGAAA-CCCAGAATA
1 AAGAAATCCAAG-ATA
34175763 AAGAAATCC-AGAATA
1 AAGAAATCCAAG-ATA
* * *
34175778 AAGAGATCTAGGATA
1 AAGAAATCCAAGATA
*
34175793 AAGAAACCCAAGATA
1 AAGAAATCCAAGATA
34175808 TGATACTATG
Statistics
Matches: 60, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
14 14 0.23
15 43 0.72
16 3 0.05
ACGTcount: A:0.58, C:0.15, G:0.16, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:34178835 original size:46 final size:46
Alignment explanation
Indices: 34178768--34178942 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
34178758 TGTAACCCGC
34178768 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGTAT
* *
34178814 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GG-ATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGTA--T
* *** * * * *
34178860 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGTAT
* *
34178907 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
34178943 ATGCCCAAAT
Statistics
Matches: 107, Mismatches: 17, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
44 5 0.05
45 2 0.02
46 65 0.61
47 30 0.28
48 1 0.01
49 4 0.04
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGTAT
Found at i:34178888 original size:93 final size:93
Alignment explanation
Indices: 34178776--34178947 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
34178766 GCCCATAAGT
* * * *
34178776 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
34178841 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
34178869 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
*
34178934 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
34178948 CAAATATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:34180977 original size:27 final size:27
Alignment explanation
Indices: 34180916--34180979 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
34180906 GGCATATTCA
34180916 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCATACAAGGGTATTACGG
* * *
34180943 TCACTTTACCCTACATGGGCT-TTACGG
1 TCATTTTACCATACAAGGG-TATTACGG
*
34180970 TCTTTTTACC
1 TCATTTTACC
34180980 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.38
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGTATTACGG
Found at i:34181062 original size:27 final size:27
Alignment explanation
Indices: 34181032--34181084 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
34181022 GGTAAATCTA
*
34181032 CAAACCAAGGGTATTTCAATAATTTTG
1 CAAACCAAGGGTATTCCAATAATTTTG
* *
34181059 CAAACCAATGGTATTCCTATAATTTT
1 CAAACCAAGGGTATTCCAATAATTTT
34181085 TAAAAAAGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (27 bp):
CAAACCAAGGGTATTCCAATAATTTTG
Found at i:34181137 original size:27 final size:27
Alignment explanation
Indices: 34181096--34181167 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
34181086 AAAAAAGTCA
**
34181096 AGGGTATTTCTGTAATTTTGTAAATT-
1 AGGGTATTTCTGTAATTTTACAAATTG
34181122 AGGGGTATTT-TGGTAATTTTACAAATTG
1 A-GGGTATTTCT-GTAATTTTACAAATTG
*
34181150 AGGGTATTTCTATAATTT
1 AGGGTATTTCTGTAATTT
34181168 CTCAAACCAG
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
26 2 0.05
27 35 0.90
28 2 0.05
ACGTcount: A:0.28, C:0.04, G:0.21, T:0.47
Consensus pattern (27 bp):
AGGGTATTTCTGTAATTTTACAAATTG
Found at i:34181263 original size:27 final size:27
Alignment explanation
Indices: 34181223--34181314 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
34181213 GTAATTTCAC
*
34181223 AATCGATGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
34181250 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
* * *
34181277 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
34181304 AATCGAGGGTA
1 AATCGAGGGTA
34181315 CTTTGGTAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
26 1 0.02
27 55 0.96
28 1 0.02
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:34181312 original size:54 final size:54
Alignment explanation
Indices: 34181213--34181341 Score: 136
Period size: 54 Copynumber: 2.4 Consensus size: 54
34181203 GGGTATTTCA
* * * * *
34181213 GTAATTTCAC-AATCGATGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATG
1 GTAATTTTACAAATCGAGGGTAAAACGATAATTCTATAAACTGAGGGTAAAATG
** ***
34181266 GTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAA-TCGAGGGTACTTTG
1 GTAATTTTACAAATCGAGGGTAAAACGATAATTCTATAAACT-GAGGGTAAAATG
*
34181320 GTAATTTTACAAGTCGAGGGTA
1 GTAATTTTACAAATCGAGGGTA
34181342 TTTCAGTAAT
Statistics
Matches: 61, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
53 8 0.13
54 53 0.87
ACGTcount: A:0.36, C:0.09, G:0.23, T:0.32
Consensus pattern (54 bp):
GTAATTTTACAAATCGAGGGTAAAACGATAATTCTATAAACTGAGGGTAAAATG
Found at i:34182537 original size:12 final size:12
Alignment explanation
Indices: 34182520--34182544 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
34182510 GCCGACTACT
34182520 GTTACTGTTACC
1 GTTACTGTTACC
34182532 GTTACTGTTACC
1 GTTACTGTTACC
34182544 G
1 G
34182545 ATTTAACACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (12 bp):
GTTACTGTTACC
Found at i:34182572 original size:45 final size:45
Alignment explanation
Indices: 34182522--34182628 Score: 151
Period size: 45 Copynumber: 2.4 Consensus size: 45
34182512 CGACTACTGT
* *
34182522 TACTGTTACCGTTACTGTTACCGATTTAACACTTTGTGTGTCAAA
1 TACTGTTACCGTTACTGTTACAGATTCAACACTTTGTGTGTCAAA
* **
34182567 TACTGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACCGTTACTGTTACAGATTCAACACTTTGTGTGTCAAA
* *
34182612 TACTGTAACTGTTACTG
1 TACTGTTACCGTTACTG
34182629 ATACTGCTAC
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 55 1.00
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (45 bp):
TACTGTTACCGTTACTGTTACAGATTCAACACTTTGTGTGTCAAA
Found at i:34192261 original size:43 final size:43
Alignment explanation
Indices: 34192213--34192324 Score: 206
Period size: 43 Copynumber: 2.6 Consensus size: 43
34192203 CCAGCATTAC
34192213 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
34192256 GCCTGCTAGGTACGAAGGCCCGAATACACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
34192299 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
34192325 TAATACCAGC
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 66 1.00
ACGTcount: A:0.29, C:0.32, G:0.27, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:34192367 original size:38 final size:38
Alignment explanation
Indices: 34192317--34192518 Score: 305
Period size: 38 Copynumber: 5.3 Consensus size: 38
34192307 GGCACGAAGG
* * * *
34192317 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
34192355 CCCGGACATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
** *
34192393 CCCGGATATTTTACCAGCACGAAGCCTGCGGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG-ATTTAA
*
34192432 GCCCGGATATAATACCAGCACGAAGCCTGCGAGATTTAA
1 -CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
34192471 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
34192509 CCCGGATATA
1 CCCGGATATA
34192519 CATCGAATAT
Statistics
Matches: 148, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
38 109 0.74
39 10 0.07
40 29 0.20
ACGTcount: A:0.30, C:0.27, G:0.23, T:0.20
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:34192451 original size:78 final size:76
Alignment explanation
Indices: 34192317--34192518 Score: 305
Period size: 78 Copynumber: 2.6 Consensus size: 76
34192307 GGCACGAAGG
* * * * *
34192317 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTATCCCGGACATAATACCAGCACGAAGCCT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
*
34192382 GCGGGATTTAA
66 GCGAGATTTAA
** *
34192393 CCCGGATATTTTACCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATATAATACCAGCACGAAGC
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG-ATTTAA-CCCGGATATAATACCAGCACGAAGC
34192458 CTGCGAGATTTAA
64 CTGCGAGATTTAA
34192471 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATA
34192519 CATCGAATAT
Statistics
Matches: 112, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
76 37 0.33
77 9 0.08
78 66 0.59
ACGTcount: A:0.30, C:0.27, G:0.23, T:0.20
Consensus pattern (76 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
GCGAGATTTAA
Found at i:34200655 original size:181 final size:181
Alignment explanation
Indices: 34200323--34200699 Score: 494
Period size: 181 Copynumber: 2.1 Consensus size: 181
34200313 AAATTTTTTA
*
34200323 TTTTATACCCATAAAAAGATAGATAAATGTTTATAATGTATAATTTAAACATTCTGGCAGTATTT
1 TTTTATACCCATAAAAAGATAGATAAATGTTTATAATGTATAATTTAAACATTCTGGCACTATTT
* * * *
34200388 TAATATAATATTAGAATCCCTACTTTTGCAAGTTTTTTTTTCTTTATTCCAATGAAGTGCATTAT
66 TAATATAATATTAGAAACCCTACTTCT-CAAGGTTTTTTTCCTTTATTCCAATGAAGTGCATTAT
*
34200453 TTTTATTTTACACTCAAACATGTTTTTTTTCTAAATTGTGCCTAAATAATTT
130 TTTTATTTTACACTCAAACATGTTTTTTTTATAAATTGTGCCTAAATAATTT
* *
34200505 TTTTATACCCA-AAAAAGTATAGATAAATTTTTATAATGTACT-GTTTAAACATT-TGGCACTAT
1 TTTTATACCCATAAAAAG-ATAGATAAATGTTTATAATGTA-TAATTTAAACATTCTGGCACTAT
* **
34200567 TTTAATATAATATTAGAAACCAC-GCTTCT-ATAGGTTTTTTTCCTTTATTTTAATGAAGTGCAT
64 TTTAATATAATATTAGAAACC-CTACTTCTCA-AGGTTTTTTTCCTTTATTCCAATGAAGTGCAT
* * *** *
34200630 TAGTTTTTGTTTTACACTTAAACATGTTTTTTTTATAAATTGTATTTAAAAAATTT
127 TA-TTTTTATTTTACACTCAAACATGTTTTTTTTATAAATTGTGCCTAAATAATTT
34200686 CATTTTATACCCAT
1 --TTTTATACCCAT
34200700 TAAGCATTTT
Statistics
Matches: 170, Mismatches: 17, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
179 1 0.01
180 30 0.18
181 84 0.49
182 43 0.25
183 12 0.07
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.46
Consensus pattern (181 bp):
TTTTATACCCATAAAAAGATAGATAAATGTTTATAATGTATAATTTAAACATTCTGGCACTATTT
TAATATAATATTAGAAACCCTACTTCTCAAGGTTTTTTTCCTTTATTCCAATGAAGTGCATTATT
TTTATTTTACACTCAAACATGTTTTTTTTATAAATTGTGCCTAAATAATTT
Found at i:34202064 original size:59 final size:61
Alignment explanation
Indices: 34201997--34202113 Score: 166
Period size: 62 Copynumber: 1.9 Consensus size: 61
34201987 ATCAATTTAG
* * *
34201997 TATTAAATTAATATAATATTTA-T-CAAGATAAATATTAGATTAAATTTAACATTAAATCT
1 TATTAAATTAATAAAATATTTACTACAAGATAAACATTAAATTAAATTTAACATTAAATCT
* *
34202056 TATTAAATTAATAAAATATTTATCTACAAGATAAACATTAAATTTAATTTAATATTAA
1 TATTAAATTAATAAAATATTTA-CTACAAGATAAACATTAAATTAAATTTAACATTAA
34202114 GATAATCACT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 21 0.42
61 1 0.02
62 28 0.56
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (61 bp):
TATTAAATTAATAAAATATTTACTACAAGATAAACATTAAATTAAATTTAACATTAAATCT
Found at i:34207993 original size:29 final size:29
Alignment explanation
Indices: 34207915--34207993 Score: 88
Period size: 29 Copynumber: 2.8 Consensus size: 29
34207905 ACATACATGT
* *
34207915 ATATGACCCACTAGGCCC-AATCTCATTC
1 ATATGACCCATTAGGCCCAAATCACATTC
* *
34207943 ATATGACCCATTGGGCCTAAATCACATTC
1 ATATGACCCATTAGGCCCAAATCACATTC
* * *
34207972 GTATGGCCCATTAGACCCAAAT
1 ATATGACCCATTAGGCCCAAAT
34207994 AATATACATA
Statistics
Matches: 41, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
28 15 0.37
29 26 0.63
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (29 bp):
ATATGACCCATTAGGCCCAAATCACATTC
Found at i:34214477 original size:18 final size:18
Alignment explanation
Indices: 34214454--34214488 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
34214444 TGATTTGGAT
34214454 CGTGTGGGTCCACACGGG
1 CGTGTGGGTCCACACGGG
34214472 CGTGTGGGTCCACACGG
1 CGTGTGGGTCCACACGG
34214489 ATAGTCCACG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.29, G:0.43, T:0.17
Consensus pattern (18 bp):
CGTGTGGGTCCACACGGG
Found at i:34218518 original size:23 final size:23
Alignment explanation
Indices: 34218490--34218583 Score: 125
Period size: 23 Copynumber: 4.1 Consensus size: 23
34218480 ATGTGTGTAT
* *
34218490 CTTTTCATATTCAAGCCTTTTAA
1 CTTTTCATATTCAAGTCTTTTCA
* *
34218513 CTTTTCATCTTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTTTTCA
* *
34218536 CTATTCATATTCAAGTTTTTTCA
1 CTTTTCATATTCAAGTCTTTTCA
*
34218559 CTTTTCATATTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTTTTCA
34218582 CT
1 CT
34218584 CTTCTAACTT
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 60 1.00
ACGTcount: A:0.22, C:0.24, G:0.04, T:0.49
Consensus pattern (23 bp):
CTTTTCATATTCAAGTCTTTTCA
Found at i:34218546 original size:46 final size:46
Alignment explanation
Indices: 34218493--34218583 Score: 146
Period size: 46 Copynumber: 2.0 Consensus size: 46
34218483 TGTGTATCTT
*
34218493 TTCATATTCAAGCCTTTTAACTTTTCATCTTCAAGTCTCTTCACTA
1 TTCATATTCAAGCCTTTTAACTTTTCATATTCAAGTCTCTTCACTA
** *
34218539 TTCATATTCAAGTTTTTTCACTTTTCATATTCAAGTCTCTTCACT
1 TTCATATTCAAGCCTTTTAACTTTTCATATTCAAGTCTCTTCACT
34218584 CTTCTAACTT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.23, C:0.24, G:0.04, T:0.48
Consensus pattern (46 bp):
TTCATATTCAAGCCTTTTAACTTTTCATATTCAAGTCTCTTCACTA
Found at i:34224097 original size:23 final size:23
Alignment explanation
Indices: 34224069--34224162 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
34224059 ATGTGTGTAT
* *
34224069 CTTTTCATATTCAAGCCTCTTAA
1 CTTTTCATATTCAAGTCTCTTCA
*
34224092 CTTTTCATCTTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
* * *
34224115 CTATTCATATTCAAGTTTTTTCA
1 CTTTTCATATTCAAGTCTCTTCA
34224138 CTTTTCATATTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
34224161 CT
1 CT
34224163 CTTCTAACTT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.22, C:0.26, G:0.04, T:0.48
Consensus pattern (23 bp):
CTTTTCATATTCAAGTCTCTTCA
Found at i:34231305 original size:22 final size:21
Alignment explanation
Indices: 34231280--34231326 Score: 51
Period size: 22 Copynumber: 2.1 Consensus size: 21
34231270 TTTTAATTTT
*
34231280 AAAT-TTAATAATAGAAAAATTA
1 AAATGTTAA-AATA-AAAAATAA
34231302 AAATGGTTAAAATAAAAAATAA
1 AAAT-GTTAAAATAAAAAATAA
34231324 AAA
1 AAA
34231327 AATAGTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
22 14 0.64
23 4 0.18
24 4 0.18
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (21 bp):
AAATGTTAAAATAAAAAATAA
Found at i:34235141 original size:23 final size:23
Alignment explanation
Indices: 34235115--34235161 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
34235105 CTGTGAGAGA
34235115 TAGTCTTTGCACTCTTTCTTGCC
1 TAGTCTTTGCACTCTTTCTTGCC
34235138 TAGTCTTTGCACTCTTTCTTGCC
1 TAGTCTTTGCACTCTTTCTTGCC
34235161 T
1 T
34235162 CTTATTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.09, C:0.30, G:0.13, T:0.49
Consensus pattern (23 bp):
TAGTCTTTGCACTCTTTCTTGCC
Found at i:34237892 original size:73 final size:73
Alignment explanation
Indices: 34237773--34237917 Score: 281
Period size: 73 Copynumber: 2.0 Consensus size: 73
34237763 ATATTATTTG
34237773 GTTCTTTTTTAATAAAGTCATTAAGTTTTTAGATCATTTTACTAAAATGACCCCAAAAAATAAAT
1 GTTCTTTTTTAATAAAGTCATTAAGTTTTTAGATCATTTTACTAAAATGACCCCAAAAAATAAAT
34237838 AATTACAT
66 AATTACAT
*
34237846 GTTCTTTTTTAATAAAGTCATTAAGTTTTTAGATCATTTTACTAAAATGATCCCAAAAAATAAAT
1 GTTCTTTTTTAATAAAGTCATTAAGTTTTTAGATCATTTTACTAAAATGACCCCAAAAAATAAAT
34237911 AATTACA
66 AATTACA
34237918 AAAATGATTA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.41, C:0.12, G:0.07, T:0.40
Consensus pattern (73 bp):
GTTCTTTTTTAATAAAGTCATTAAGTTTTTAGATCATTTTACTAAAATGACCCCAAAAAATAAAT
AATTACAT
Found at i:34238322 original size:111 final size:111
Alignment explanation
Indices: 34238191--34238392 Score: 257
Period size: 111 Copynumber: 1.8 Consensus size: 111
34238181 CACTTTTTAA
* * * * *
34238191 TATTAAAAAATAATTGTTTTTTG-GTGTTAGTAAACTGATGGTCGATAC-CTATTTTATCAGATA
1 TATTAAAAAATAA-TGTTTTTTGCGTGCTAGCAAACTAATGGTCGACACTC-ACTTTATCAGATA
* *
34238254 AAAAAATTTTGGGTTTGGGAAACTAGATAGTCAGCATCACCTTTTTCT
64 AAAAAAATTTGGGTTTAGGAAACTAGATAGTCAGCATCACCTTTTTCT
* * * *
34238302 TATTAAAAAATTAAT-TTTTTTGCTTGCTGGCACACTAATGGTTGACACTCACTTTATCAGATAA
1 TATTAAAAAA-TAATGTTTTTTGCGTGCTAGCAAACTAATGGTCGACACTCACTTTATCAGATAA
34238366 AAAAAATTTGGGTTTAGGAAACTAGAT
65 AAAAAATTTGGGTTTAGGAAACTAGAT
34238393 GGCCCGCATC
Statistics
Matches: 77, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
110 7 0.09
111 66 0.86
112 4 0.05
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.38
Consensus pattern (111 bp):
TATTAAAAAATAATGTTTTTTGCGTGCTAGCAAACTAATGGTCGACACTCACTTTATCAGATAAA
AAAAATTTGGGTTTAGGAAACTAGATAGTCAGCATCACCTTTTTCT
Found at i:34246550 original size:17 final size:17
Alignment explanation
Indices: 34246528--34246593 Score: 51
Period size: 17 Copynumber: 3.5 Consensus size: 17
34246518 TTTTCAGAAT
34246528 TGTAAATTCTCAAATAA
1 TGTAAATTCTCAAATAA
*
34246545 TGTAAATTTGTCCTAGAACTCAA
1 TGTAAA-TTCT-C-A-AA-T-AA
*
34246568 GTCTAAATTCTCAAATAA
1 -TGTAAATTCTCAAATAA
34246586 TGTAAATT
1 TGTAAATT
34246594 TGTCCTAGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
17 13 0.34
18 5 0.13
19 2 0.05
20 3 0.08
21 3 0.08
22 2 0.05
23 5 0.13
24 5 0.13
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (17 bp):
TGTAAATTCTCAAATAA
Found at i:34246587 original size:41 final size:41
Alignment explanation
Indices: 34246530--34246612 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
34246520 TTCAGAATTG
34246530 TAAATTCTCAAATAATGTAAATTTGTCCTAGAACTCAAGTC
1 TAAATTCTCAAATAATGTAAATTTGTCCTAGAACTCAAGTC
34246571 TAAATTCTCAAATAATGTAAATTTGTCCTAGAACTCAAGTC
1 TAAATTCTCAAATAATGTAAATTTGTCCTAGAACTCAAGTC
34246612 T
1 T
34246613 TGGAATCTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.35
Consensus pattern (41 bp):
TAAATTCTCAAATAATGTAAATTTGTCCTAGAACTCAAGTC
Found at i:34249337 original size:24 final size:24
Alignment explanation
Indices: 34249310--34249361 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
34249300 CTAGTAGGTC
*
34249310 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
34249334 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
34249358 AAAT
1 AAAT
34249362 CTTCTAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:34250177 original size:30 final size:30
Alignment explanation
Indices: 34250141--34250204 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
34250131 TTAGAGTTAT
34250141 CGCTCGTTGACACTAACAAAAAATCATCAC
1 CGCTCGTTGACACTAACAAAAAATCATCAC
*
34250171 CGCTCGTTGACACTAACAAGAAATCATCAC
1 CGCTCGTTGACACTAACAAAAAATCATCAC
34250201 CGCT
1 CGCT
34250205 TTCATCGGCC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.36, C:0.31, G:0.12, T:0.20
Consensus pattern (30 bp):
CGCTCGTTGACACTAACAAAAAATCATCAC
Found at i:34261769 original size:13 final size:13
Alignment explanation
Indices: 34261751--34261776 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34261741 GGGGATTTTT
34261751 TTAACTAAACTAA
1 TTAACTAAACTAA
34261764 TTAACTAAACTAA
1 TTAACTAAACTAA
34261777 GAATGCACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACTAAACTAA
Found at i:34268111 original size:13 final size:13
Alignment explanation
Indices: 34268093--34268118 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34268083 GGGGATTTTT
34268093 TTAACTAAACTAA
1 TTAACTAAACTAA
34268106 TTAACTAAACTAA
1 TTAACTAAACTAA
34268119 GAATGCACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACTAAACTAA
Found at i:34272092 original size:51 final size:50
Alignment explanation
Indices: 34272020--34272179 Score: 223
Period size: 51 Copynumber: 3.2 Consensus size: 50
34272010 CTGATGGCTA
* **
34272020 AATAAATTATAGGATAAATTATATTAAAAGTAATAAAATCAAAATTAAAAT
1 AATAAATTATAGGATAAATTATATTTAAAGTAAT-AAATTTAAATTAAAAT
34272071 AATAAATTATAGGATAAATTATATTTAAAGTAATAAATTTAAATTAAAAAT
1 AATAAATTATAGGATAAATTATATTTAAAGTAATAAATTTAAATT-AAAAT
* * * *
34272122 AATTAATTAAATGATAAATTATATTTAAAGTATTAAATTTAAATTAAAA-
1 AATAAATTATAGGATAAATTATATTTAAAGTAATAAATTTAAATTAAAAT
34272171 AATAGAATT
1 AATA-AATT
34272180 TAATTAAAAA
Statistics
Matches: 99, Mismatches: 8, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
49 3 0.03
50 17 0.17
51 79 0.80
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.36
Consensus pattern (50 bp):
AATAAATTATAGGATAAATTATATTTAAAGTAATAAATTTAAATTAAAAT
Found at i:34272168 original size:19 final size:17
Alignment explanation
Indices: 34272084--34272199 Score: 76
Period size: 19 Copynumber: 6.6 Consensus size: 17
34272074 AAATTATAGG
*
34272084 ATAAATTATATTTAAAGTA
1 ATAAATTA-AATTAAA-TA
34272103 ATAAATTTAAATTAAA-A
1 ATAAA-TTAAATTAAATA
*
34272120 AT-AATT-AATTAAATG
1 ATAAATTAAATTAAATA
*
34272135 ATAAATTATATTTAAAGTA
1 ATAAATTA-AATTAAA-TA
* *
34272154 TTAAATTTAAATTAAAAA
1 ATAAA-TTAAATTAAATA
* *
34272172 ATAGAATTTAATTAAAAA
1 ATA-AATTAAATTAAATA
*
34272190 ATTAATTAAA
1 ATAAATTAAA
34272200 GGCAAAATTA
Statistics
Matches: 78, Mismatches: 11, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
14 7 0.09
15 4 0.05
16 6 0.08
17 9 0.12
18 22 0.28
19 24 0.31
20 6 0.08
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (17 bp):
ATAAATTAAATTAAATA
Found at i:34272225 original size:19 final size:18
Alignment explanation
Indices: 34272153--34272225 Score: 53
Period size: 18 Copynumber: 4.1 Consensus size: 18
34272143 TATTTAAAGT
*
34272153 ATTAAATTTAAATTAAAAA
1 ATTAAATTT-AAGTAAAAA
*
34272172 A-TAGAATTTAATTAAAAA
1 ATTA-AATTTAAGTAAAAA
* **
34272190 ATT-AATTAAAG-GCAAA
1 ATTAAATTTAAGTAAAAA
34272206 ATTAGAATTTAAGTAAAAA
1 ATTA-AATTTAAGTAAAAA
34272225 A
1 A
34272226 CGGTTATGGG
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
16 6 0.14
17 6 0.14
18 19 0.45
19 11 0.26
ACGTcount: A:0.60, C:0.01, G:0.07, T:0.32
Consensus pattern (18 bp):
ATTAAATTTAAGTAAAAA
Found at i:34272460 original size:18 final size:19
Alignment explanation
Indices: 34272437--34272472 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
34272427 CCTTTAATTA
34272437 ATTTTTTAA-TTAAATTTT
1 ATTTTTTAATTTAAATTTT
34272455 ATTTTTTAATTTAAATTT
1 ATTTTTTAATTTAAATTT
34272473 AATACTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
ATTTTTTAATTTAAATTTT
Found at i:34272473 original size:18 final size:17
Alignment explanation
Indices: 34272432--34272473 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
34272422 TTTAGCCTTT
*
34272432 AATTAATTTTTTAATTA
1 AATTTATTTTTTAATTA
34272449 AATTTTATTTTTTAATTTA
1 AA-TTTATTTTTTAA-TTA
34272468 AATTTA
1 AATTTA
34272474 ATACTTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 2 0.09
18 15 0.68
19 5 0.23
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
AATTTATTTTTTAATTA
Found at i:34272582 original size:51 final size:50
Alignment explanation
Indices: 34272458--34272654 Score: 261
Period size: 51 Copynumber: 3.9 Consensus size: 50
34272448 AAATTTTATT
* * * *
34272458 TTTTAATTTAAATTTAATACTTTAAATATGATTTATCCTATAATTAAATA
1 TTTTAATTTTAATTTATTACTTTAAATATAATTTATCCTATAATTAATTA
* * * * * *
34272508 TTTTAATTTTAATTTATTGCTTTAAAAATAATTTATCATTTGACTAATTA
1 TTTTAATTTTAATTTATTACTTTAAATATAATTTATCCTATAATTAATTA
34272558 TTTTTAA-TTTAGATTTATTACTTTAAATATAATTTATCCTATAATTAATTA
1 -TTTTAATTTTA-ATTTATTACTTTAAATATAATTTATCCTATAATTAATTA
*
34272609 TTTTAATTTTAATTTTATTGCTTTAAATATAATTTATCCTATAATT
1 TTTTAATTTTAA-TTTATTACTTTAAATATAATTTATCCTATAATT
34272655 TATTTAGTCA
Statistics
Matches: 126, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
50 51 0.40
51 75 0.60
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.54
Consensus pattern (50 bp):
TTTTAATTTTAATTTATTACTTTAAATATAATTTATCCTATAATTAATTA
Found at i:34272611 original size:101 final size:102
Alignment explanation
Indices: 34272457--34272646 Score: 328
Period size: 101 Copynumber: 1.9 Consensus size: 102
34272447 TAAATTTTAT
*
34272457 TTTTTAATTTAAATTTAATACTTTAAATATGATTTATCCTATAATTAAATATTTTAATTTTAA-T
1 TTTTTAATTTAAATTTAATACTTTAAATATAATTTATCCTATAATTAAATATTTTAATTTTAATT
34272521 TTATTGCTTTAAAAATAATTTATCATTTGACTAATTA
66 TTATTGCTTTAAAAATAATTTATCATTTGACTAATTA
* * *
34272558 TTTTTAATTTAGATTTATTACTTTAAATATAATTTATCCTATAATTAATTATTTTAATTTTAATT
1 TTTTTAATTTAAATTTAATACTTTAAATATAATTTATCCTATAATTAAATATTTTAATTTTAATT
*
34272623 TTATTGCTTTAAATATAATTTATC
66 TTATTGCTTTAAAAATAATTTATC
34272647 CTATAATTTA
Statistics
Matches: 83, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
101 59 0.71
102 24 0.29
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.55
Consensus pattern (102 bp):
TTTTTAATTTAAATTTAATACTTTAAATATAATTTATCCTATAATTAAATATTTTAATTTTAATT
TTATTGCTTTAAAAATAATTTATCATTTGACTAATTA
Found at i:34278556 original size:21 final size:21
Alignment explanation
Indices: 34278532--34278606 Score: 82
Period size: 21 Copynumber: 3.6 Consensus size: 21
34278522 TCATATAAAA
*
34278532 ATATAGTAAAATAATTAATAC
1 ATATAGGAAAATAATTAATAC
* *
34278553 ATATTGGAAAATACA-TAGTA-
1 ATATAGGAAAATA-ATTAATAC
*
34278573 ATATAGTAAAATAATTAATAC
1 ATATAGGAAAATAATTAATAC
*
34278594 ATATTGGAAAATA
1 ATATAGGAAAATA
34278607 CATAGTATAT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
19 1 0.02
20 15 0.35
21 26 0.60
22 1 0.02
ACGTcount: A:0.55, C:0.04, G:0.09, T:0.32
Consensus pattern (21 bp):
ATATAGGAAAATAATTAATAC
Found at i:34278588 original size:41 final size:41
Alignment explanation
Indices: 34278531--34278622 Score: 168
Period size: 41 Copynumber: 2.3 Consensus size: 41
34278521 TTCATATAAA
34278531 AATATAGTAAAATAATTAATACATATTGGAAAATACATAGT
1 AATATAGTAAAATAATTAATACATATTGGAAAATACATAGT
34278572 AATATAGTAAAATAATTAATACATATTGGAAAATACATAGT
1 AATATAGTAAAATAATTAATACATATTGGAAAATACATAGT
*
34278613 -ATATACTAAA
1 AATATAGTAAA
34278623 TTTATAAATA
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
40 9 0.18
41 41 0.82
ACGTcount: A:0.54, C:0.05, G:0.09, T:0.32
Consensus pattern (41 bp):
AATATAGTAAAATAATTAATACATATTGGAAAATACATAGT
Found at i:34278790 original size:21 final size:21
Alignment explanation
Indices: 34278752--34278808 Score: 64
Period size: 20 Copynumber: 2.7 Consensus size: 21
34278742 GTATAATAAT
* *
34278752 AATATAATAGATAAATATAGTGA
1 AATATAATA-ATATATATA-TCA
34278775 AATA-AATAATATATATATCA
1 AATATAATAATATATATATCA
34278795 AA-ATAATAATATAT
1 AATATAATAATATAT
34278809 TGGATAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 1 0.03
20 14 0.45
21 8 0.26
22 4 0.13
23 4 0.13
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (21 bp):
AATATAATAATATATATATCA
Found at i:34278857 original size:17 final size:16
Alignment explanation
Indices: 34278837--34278886 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 16
34278827 TGTATTTCTT
34278837 TATAACTAATATTAAAA
1 TATAA-TAATATTAAAA
34278854 TATATATAATATTTAAAA
1 TATA-ATAATA-TTAAAA
*
34278872 TAAAATAATA-TAAAA
1 TATAATAATATTAAAA
34278887 AAAGATTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
15 5 0.17
17 15 0.50
18 10 0.33
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (16 bp):
TATAATAATATTAAAA
Found at i:34282928 original size:30 final size:30
Alignment explanation
Indices: 34282845--34282930 Score: 127
Period size: 30 Copynumber: 2.9 Consensus size: 30
34282835 CGGCCATGAT
* * * * *
34282845 ACACGGGCATGTGGTCTGCCCGTATGCCTC
1 ACACGAGCGTGTGGTTTACCCGTGTGCCTC
34282875 ACACGAGCGTGTGGTTTACCCGTGTGCCTC
1 ACACGAGCGTGTGGTTTACCCGTGTGCCTC
34282905 ACACGAGCGTGTGGTTTACCCGTGTG
1 ACACGAGCGTGTGGTTTACCCGTGTG
34282931 GAAGTGCCTG
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.14, C:0.29, G:0.31, T:0.26
Consensus pattern (30 bp):
ACACGAGCGTGTGGTTTACCCGTGTGCCTC
Found at i:34286015 original size:112 final size:112
Alignment explanation
Indices: 34285792--34286020 Score: 300
Period size: 112 Copynumber: 2.0 Consensus size: 112
34285782 ATACTATTCT
* * * * *
34285792 CAATCTATTTCAATAAATGACAACGGTTTTAAATGTTTATAAAATTCAAAATCAAAATGGATTGA
1 CAATTTATTACAAAAAATGACAACAGTTTCAAATGTTTATAAAATTCAAAATCAAAATGGATTGA
* * *
34285857 TTAGCGACCATGCTAAAACCTATCTTTTAGTTACTAAGCTTTTTGGC
66 TTAGAGACCATGCTAAAACCAATCTTTTAGTTACTAAGCTTATTGGC
* *
34285904 CAATTTATTACAAAAAATGACAATAGTTTCAAATGTTTATAAAATTCAAAATCAAGAT-GAGTTG
1 CAATTTATTACAAAAAATGACAACAGTTTCAAATGTTTATAAAATTCAAAATCAAAATGGA-TTG
* * **
34285968 ATTAGAGATCATGCTATAACCAATCTTTTAGTTA-TTGGACTTATTGGC
65 ATTAGAGACCATGCTAAAACCAATCTTTTAGTTACTAAG-CTTATTGGC
34286016 CAATT
1 CAATT
34286021 AAAATGATGG
Statistics
Matches: 101, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
111 4 0.04
112 97 0.96
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.36
Consensus pattern (112 bp):
CAATTTATTACAAAAAATGACAACAGTTTCAAATGTTTATAAAATTCAAAATCAAAATGGATTGA
TTAGAGACCATGCTAAAACCAATCTTTTAGTTACTAAGCTTATTGGC
Found at i:34288260 original size:14 final size:14
Alignment explanation
Indices: 34288241--34288276 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
34288231 TTAGTTGGTG
*
34288241 CATTTGCATTCATA
1 CATTTGCATACATA
*
34288255 CATTTGCATACATC
1 CATTTGCATACATA
34288269 CATTTGCA
1 CATTTGCA
34288277 AAAACCATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39
Consensus pattern (14 bp):
CATTTGCATACATA
Found at i:34290989 original size:7 final size:8
Alignment explanation
Indices: 34290977--34291002 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
34290967 TAATTTTTAA
34290977 ATTTTTTT
1 ATTTTTTT
34290985 ATTTTTTT
1 ATTTTTTT
34290993 ATTTTTTT
1 ATTTTTTT
34291001 AT
1 AT
34291003 ATTGTCAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (8 bp):
ATTTTTTT
Found at i:34290990 original size:16 final size:16
Alignment explanation
Indices: 34290969--34291002 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
34290959 TATACATATA
34290969 ATTTTTAAATTTTTTT
1 ATTTTTAAATTTTTTT
**
34290985 ATTTTTTTATTTTTTT
1 ATTTTTAAATTTTTTT
34291001 AT
1 AT
34291003 ATTGTCAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (16 bp):
ATTTTTAAATTTTTTT
Found at i:34295216 original size:30 final size:29
Alignment explanation
Indices: 34295181--34295283 Score: 100
Period size: 30 Copynumber: 3.4 Consensus size: 29
34295171 TTAATCACAT
* *
34295181 TAATATTAAACTAATAAAATATTGTCTAGA
1 TAATATTAAATTAATAAAATA-TATCTAGA
** *
34295211 TAATATTAAATTTAATTGAATATATCATA-T
1 TAATATTAAA-TTAATAAAATATATC-TAGA
34295241 TAATATTAAATTAATAAAATACTATCTAGA
1 TAATATTAAATTAATAAAATA-TATCTAGA
*
34295271 TAGATATTTAATT
1 TA-ATATTAAATT
34295284 TAATTTAATA
Statistics
Matches: 59, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
29 11 0.19
30 29 0.49
31 19 0.32
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.42
Consensus pattern (29 bp):
TAATATTAAATTAATAAAATATATCTAGA
Found at i:34295272 original size:60 final size:61
Alignment explanation
Indices: 34295174--34295308 Score: 200
Period size: 60 Copynumber: 2.2 Consensus size: 61
34295164 ATTAGAATTA
* *
34295174 ATCACATTAATATTAAACTAATAAAATATTGTCTAGATA-ATATTAAATTTAATTGAATAT
1 ATCACATTAATATTAAACTAATAAAATACTATCTAGATAGATATTAAATTTAATTGAATAT
* * * *
34295234 ATCATATTAATATTAAATTAATAAAATACTATCTAGATAGATATTTAATTTAATTTAATAT
1 ATCACATTAATATTAAACTAATAAAATACTATCTAGATAGATATTAAATTTAATTGAATAT
*
34295295 CTCACATTAATATT
1 ATCACATTAATATT
34295309 TAGATTAAAT
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
60 35 0.53
61 31 0.47
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.42
Consensus pattern (61 bp):
ATCACATTAATATTAAACTAATAAAATACTATCTAGATAGATATTAAATTTAATTGAATAT
Found at i:34295308 original size:30 final size:30
Alignment explanation
Indices: 34295211--34295325 Score: 99
Period size: 31 Copynumber: 3.8 Consensus size: 30
34295201 ATTGTCTAGA
* * *
34295211 TAATATTAAATTTAATTGAATATATCATAT
1 TAATATTTAATTTAATTTAATATATCACAT
* ** *
34295241 TAATA-TTAAATTAATAAAATACTATCTAGA-
1 TAATATTTAATTTAATTTAATA-TATC-ACAT
*
34295271 TAGATATTTAATTTAATTTAATATCTCACAT
1 TA-ATATTTAATTTAATTTAATATATCACAT
*
34295302 TAATATTTAGATTAAATTTAATAT
1 TAATATTTA-ATTTAATTTAATAT
34295326 TAAATTCATT
Statistics
Matches: 68, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
29 12 0.18
30 20 0.29
31 23 0.34
32 13 0.19
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.45
Consensus pattern (30 bp):
TAATATTTAATTTAATTTAATATATCACAT
Found at i:34299319 original size:19 final size:19
Alignment explanation
Indices: 34299275--34299320 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
34299265 TTCATAAAAA
34299275 TAAAAAATATAAAAATTAT
1 TAAAAAATATAAAAATTAT
*
34299294 TAGAAAAATCA-AACAATTAT
1 TA-AAAAAT-ATAAAAATTAT
34299314 TAAAAAA
1 TAAAAAA
34299321 GTTTATCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 7 0.29
20 16 0.67
21 1 0.04
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.26
Consensus pattern (19 bp):
TAAAAAATATAAAAATTAT
Found at i:34301815 original size:27 final size:27
Alignment explanation
Indices: 34301785--34301966 Score: 188
Period size: 27 Copynumber: 6.8 Consensus size: 27
34301775 AGGCAGACCA
* ** **
34301785 TTCAGAGTTCACCACAAAAACTATTTT
1 TTCAGAGTTCGCCACAAAGGCTATCCT
** *
34301812 TTCAGAGTTTTCCAAAAAGGCTATCCT
1 TTCAGAGTTCGCCACAAAGGCTATCCT
34301839 TTCAGAGTTCGCCAC-AAGGCTATCCT
1 TTCAGAGTTCGCCACAAAGGCTATCCT
*
34301865 TTCAAAGTTCGCCACAAAGGCTATCCT
1 TTCAGAGTTCGCCACAAAGGCTATCCT
* * *
34301892 TTCAGAGTTCACCATAAAGGCTATTCT
1 TTCAGAGTTCGCCACAAAGGCTATCCT
* * * **
34301919 CTT-AAAGTTGGCCACAAAGTCTATTGT
1 -TTCAGAGTTCGCCACAAAGGCTATCCT
34301946 TTCAGAGTTCGCCACAAAGGC
1 TTCAGAGTTCGCCACAAAGGC
34301967 CATCAAAATG
Statistics
Matches: 128, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
26 27 0.21
27 99 0.77
28 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (27 bp):
TTCAGAGTTCGCCACAAAGGCTATCCT
Found at i:34308253 original size:15 final size:15
Alignment explanation
Indices: 34308233--34308264 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
34308223 TATTTCACTA
*
34308233 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
34308248 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
34308263 TT
1 TT
34308265 TGCATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:34314948 original size:17 final size:18
Alignment explanation
Indices: 34314916--34314949 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
34314906 TATATGTGTA
34314916 CTTTTATATATAAATATT
1 CTTTTATATATAAATATT
*
34314934 CTTTTAT-TTTAAATAT
1 CTTTTATATATAAATAT
34314950 GATAATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (18 bp):
CTTTTATATATAAATATT
Found at i:34320657 original size:20 final size:20
Alignment explanation
Indices: 34320601--34320657 Score: 50
Period size: 20 Copynumber: 3.0 Consensus size: 20
34320591 TAATAACATT
* *
34320601 AATATATTAGTAATCTAATA
1 AATATATTGGTAATCTAATC
* *
34320621 AATA-ATAGATAA--T-ATC
1 AATATATTGGTAATCTAATC
34320637 AATATATTGGTAATCTAATC
1 AATATATTGGTAATCTAATC
34320657 A
1 A
34320658 TTAATGTATA
Statistics
Matches: 27, Mismatches: 6, Indels: 8
0.66 0.15 0.20
Matches are distributed among these distances:
16 6 0.22
17 7 0.26
19 6 0.22
20 8 0.30
ACGTcount: A:0.49, C:0.07, G:0.07, T:0.37
Consensus pattern (20 bp):
AATATATTGGTAATCTAATC
Found at i:34320723 original size:30 final size:30
Alignment explanation
Indices: 34320688--34320745 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
34320678 AACAAATTAT
34320688 AATTATAATTTTATTATATAAT-TATTTTAA
1 AATTATAATTTTATTA-ATAATATATTTTAA
*
34320718 AATTATTATTTTATTAATAATATATTTT
1 AATTATAATTTTATTAATAATATATTTT
34320746 TTTGGGTGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 5 0.19
30 21 0.81
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (30 bp):
AATTATAATTTTATTAATAATATATTTTAA
Found at i:34327926 original size:16 final size:17
Alignment explanation
Indices: 34327888--34327928 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
34327878 TTTTTTTAAA
*
34327888 AATATAATACATATATT
1 AATAAAATACATATATT
*
34327905 AA-AAAATACTTA-ATT
1 AATAAAATACATATATT
34327920 AATAAAATA
1 AATAAAATA
34327929 TAAATAATCC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 5 0.24
16 14 0.67
17 2 0.10
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (17 bp):
AATAAAATACATATATT
Found at i:34327959 original size:15 final size:13
Alignment explanation
Indices: 34327948--34327984 Score: 56
Period size: 15 Copynumber: 2.7 Consensus size: 13
34327938 CATATATCAT
34327948 ATAAAATAATATA
1 ATAAAATAATATA
34327961 ATAATATATAATATA
1 ATAA-A-ATAATATA
34327976 ATAAAATAA
1 ATAAAATAA
34327985 ATGGATTTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 8 0.36
14 2 0.09
15 12 0.55
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
ATAAAATAATATA
Found at i:34327965 original size:8 final size:8
Alignment explanation
Indices: 34327952--34327984 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
34327942 TATCATATAA
34327952 AATAATAT
1 AATAATAT
34327960 AATAATAT
1 AATAATAT
34327968 -ATAATAT
1 AATAATAT
*
34327975 AATAAAAT
1 AATAATAT
34327983 AA
1 AA
34327985 ATGGATTTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
7 7 0.30
8 16 0.70
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (8 bp):
AATAATAT
Found at i:34327969 original size:20 final size:20
Alignment explanation
Indices: 34327946--34327984 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
34327936 TCCATATATC
*
34327946 ATATAAAATAATATAATAAT
1 ATATAAAATAATAAAATAAT
*
34327966 ATATAATATAATAAAATAA
1 ATATAAAATAATAAAATAA
34327985 ATGGATTTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
ATATAAAATAATAAAATAAT
Found at i:34330149 original size:23 final size:22
Alignment explanation
Indices: 34330099--34330151 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 22
34330089 TATGATTTTA
34330099 TTTATTATTTGGGATGTTTAGT
1 TTTATTATTTGGGATGTTTAGT
*
34330121 TATTATTATTTGGTAT-TTGATAGT
1 T-TTATTATTTGGGATGTT--TAGT
34330145 TTTATTA
1 TTTATTA
34330152 ATATATGATT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 3 0.11
23 19 0.70
24 5 0.19
ACGTcount: A:0.23, C:0.00, G:0.17, T:0.60
Consensus pattern (22 bp):
TTTATTATTTGGGATGTTTAGT
Found at i:34330393 original size:20 final size:20
Alignment explanation
Indices: 34330348--34330394 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
34330338 ATTTTTTTTA
*
34330348 TTTTCATTACTTTAAAATGT
1 TTTTTATTACTTTAAAATGT
*
34330368 TATTTTATTATTTTAAATAT-T
1 T-TTTTATTACTTTAAA-ATGT
34330389 TTTTTA
1 TTTTTA
34330395 AAATTAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 6 0.26
21 15 0.65
22 2 0.09
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (20 bp):
TTTTTATTACTTTAAAATGT
Found at i:34331031 original size:44 final size:41
Alignment explanation
Indices: 34330958--34331049 Score: 121
Period size: 44 Copynumber: 2.2 Consensus size: 41
34330948 ATAGTAACAT
*
34330958 ATAAAATATGTACAAAATTAAACTGTAAATATTATACTAAA
1 ATAAAATATGTACAAAATTAAAATGTAAATATTATACTAAA
* * *
34330999 ATAAAATATGTATAATGCAATTAAAATTTAAATATTATATTAAA
1 ATAAAATATGTACAA---AATTAAAATGTAAATATTATACTAAA
34331043 ATAAAAT
1 ATAAAAT
34331050 TTTAATTTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
41 14 0.32
44 30 0.68
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (41 bp):
ATAAAATATGTACAAAATTAAAATGTAAATATTATACTAAA
Done.