Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 118 of 144
Found at i:36742688 original size:29 final size:29
Alignment explanation
Indices: 36742649--36742708 Score: 86
Period size: 30 Copynumber: 2.1 Consensus size: 29
36742639 AAATACAAAC
* *
36742649 ATTATAAAATTATT-ATAAATGACAAAAA
1 ATTATAAAATTATTAAAAAATGAAAAAAA
36742677 ATTATATAAATTATTAAAAAATGAAAAAAA
1 ATTATA-AAATTATTAAAAAATGAAAAAAA
36742707 AT
1 AT
36742709 AAAAAAAACT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 6 0.21
29 8 0.29
30 14 0.50
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (29 bp):
ATTATAAAATTATTAAAAAATGAAAAAAA
Found at i:36742695 original size:19 final size:20
Alignment explanation
Indices: 36742649--36742696 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 20
36742639 AAATACAAAC
36742649 ATTATAAAATTATTATAAATG
1 ATTA-AAAATTATTATAAATG
** *
36742670 ACAAAAAATTA-TATAAATT
1 ATTAAAAATTATTATAAATG
36742689 ATTAAAAA
1 ATTAAAAA
36742697 ATGAAAAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
19 13 0.59
20 7 0.32
21 2 0.09
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (20 bp):
ATTAAAAATTATTATAAATG
Found at i:36742695 original size:20 final size:21
Alignment explanation
Indices: 36742649--36742698 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
36742639 AAATACAAAC
*
36742649 ATTATAAAATTATTATAAATG
1 ATTAAAAAATTATTATAAATG
* *
36742670 A-CAAAAAATTA-TATAAATT
1 ATTAAAAAATTATTATAAATG
36742689 ATTAAAAAAT
1 ATTAAAAAAT
36742699 GAAAAAAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 8 0.33
20 15 0.62
21 1 0.04
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (21 bp):
ATTAAAAAATTATTATAAATG
Found at i:36742798 original size:20 final size:17
Alignment explanation
Indices: 36742758--36742807 Score: 55
Period size: 20 Copynumber: 2.7 Consensus size: 17
36742748 TGAAAAATAA
36742758 AAAAATTTAAAATTATG
1 AAAAATTTAAAATTATG
*
36742775 AAAATATTTAAAACTTTATT
1 AAAA-ATTTAAAA--TTATG
36742795 AAAAATATTAAAA
1 AAAAAT-TTAAAA
36742808 ATTACATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 4 0.14
18 8 0.29
19 2 0.07
20 14 0.50
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (17 bp):
AAAAATTTAAAATTATG
Found at i:36743314 original size:16 final size:17
Alignment explanation
Indices: 36743293--36743327 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
36743283 ATATTTTTAA
*
36743293 TAATTTTCTAT-ATTTT
1 TAATTTTCCATGATTTT
36743309 TAATTTTCCATGATTTT
1 TAATTTTCCATGATTTT
36743326 TA
1 TA
36743328 CAAAAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.26, C:0.09, G:0.03, T:0.63
Consensus pattern (17 bp):
TAATTTTCCATGATTTT
Found at i:36743423 original size:26 final size:27
Alignment explanation
Indices: 36743383--36743452 Score: 76
Period size: 26 Copynumber: 2.7 Consensus size: 27
36743373 TTTAATTTTT
*
36743383 TAATAATTTAT-ATTTTTTC-CATTTA
1 TAATAATTTTTAATTTTTTCACATTTA
*
36743408 TAATAATTTTTAATTTTTTCACTTTTA
1 TAATAATTTTTAATTTTTTCACATTTA
*
36743435 T-AT-ATTTTATAATATTTT
1 TAATAATTTT-TAATTTTTT
36743453 AAATAATTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
25 15 0.38
26 18 0.46
27 6 0.15
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (27 bp):
TAATAATTTTTAATTTTTTCACATTTA
Found at i:36747440 original size:44 final size:43
Alignment explanation
Indices: 36747355--36747446 Score: 107
Period size: 44 Copynumber: 2.1 Consensus size: 43
36747345 TAATAAGAGT
* *
36747355 ATATCTAAATATTAATTTAGTAAAAATAAATTTTAATAATTAAA
1 ATATCTAAATATTAATTTAGTAAAAATAAA-TGTAAAAATTAAA
*
36747399 ATATCTAAATATTAA-TTACGTAAAAAATTAAA-GTAAAAATTATA
1 ATATCTAAATATTAATTTA-GT-AAAAA-TAAATGTAAAAATTAAA
36747443 ATAT
1 ATAT
36747447 TCAATAAACA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
43 3 0.07
44 30 0.71
45 5 0.12
46 4 0.10
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.38
Consensus pattern (43 bp):
ATATCTAAATATTAATTTAGTAAAAATAAATGTAAAAATTAAA
Found at i:36754661 original size:19 final size:19
Alignment explanation
Indices: 36754637--36754675 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
36754627 AAAAAACATG
36754637 CAACAAGAGCAAACAAAAA
1 CAACAAGAGCAAACAAAAA
36754656 CAACAAGAGCAAACAAAAA
1 CAACAAGAGCAAACAAAAA
36754675 C
1 C
36754676 TTCTAAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.67, C:0.23, G:0.10, T:0.00
Consensus pattern (19 bp):
CAACAAGAGCAAACAAAAA
Found at i:36758846 original size:31 final size:32
Alignment explanation
Indices: 36758811--36759084 Score: 180
Period size: 31 Copynumber: 8.4 Consensus size: 32
36758801 AAATGTATGT
* *
36758811 ATATACTTATCAAATAATTATAATCGAATGCA
1 ATATACCTATCAAATACTTATAATCGAATGCA
* * *
36758843 TATATACTTATCAACTACTTATAACCGAATGC-
1 -ATATACCTATCAAATACTTATAATCGAATGCA
* * *
36758875 ATATACAC-ATCAAAT-GTATACAACCGAATGCA
1 ATATAC-CTATCAAATACT-TATAATCGAATGCA
*
36758907 TATATACCTATCTAATACTTATAATCGAATGC-
1 -ATATACCTATCAAATACTTATAATCGAATGCA
*
36758939 ATATACAC-ATCAAAGGTA--TATAACCGAATGCATA
1 ATATAC-CTATCAAA--TACTTATAATCGAATGC--A
* *
36758973 TATATACCTATCAAATTCTTATAATCGAAAGC-
1 -ATATACCTATCAAATACTTATAATCGAATGCA
36759005 ATATACACT-TCAAAGGTA--TATAA-CTGAATGCATA
1 ATATAC-CTATCAAA--TACTTATAATC-GAATGC--A
36759039 TATATACCTATCAAATACTTATAATCGAATGC-
1 -ATATACCTATCAAATACTTATAATCGAATGCA
36759071 ATATACACT-TCAAA
1 ATATAC-CTATCAAA
36759085 GGTATATAAC
Statistics
Matches: 194, Mismatches: 18, Indels: 60
0.71 0.07 0.22
Matches are distributed among these distances:
30 2 0.01
31 79 0.41
32 6 0.03
33 57 0.29
34 4 0.02
35 45 0.23
36 1 0.01
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.31
Consensus pattern (32 bp):
ATATACCTATCAAATACTTATAATCGAATGCA
Found at i:36759012 original size:66 final size:66
Alignment explanation
Indices: 36758829--36759121 Score: 423
Period size: 66 Copynumber: 4.5 Consensus size: 66
36758819 ATCAAATAAT
* * * * *
36758829 TATAATCGAATGC--ATATATACTTATCAACTACTTATAACCGAATGCATATACACATCAAATGT
1 TATAACCGAATGCATATATATACCTATCAAATACTTATAATCGAATGCATATACACATCAAAGGT
36758892 A
66 A
* *
36758893 TACAACCGAATGC--ATATATACCTATCTAATACTTATAATCGAATGCATATACACATCAAAGGT
1 TATAACCGAATGCATATATATACCTATCAAATACTTATAATCGAATGCATATACACATCAAAGGT
36758956 A
66 A
* * *
36758957 TATAACCGAATGCATATATATACCTATCAAATTCTTATAATCGAAAGCATATACACTTCAAAGGT
1 TATAACCGAATGCATATATATACCTATCAAATACTTATAATCGAATGCATATACACATCAAAGGT
36759022 A
66 A
* *
36759023 TATAACTGAATGCATATATATACCTATCAAATACTTATAATCGAATGCATATACACTTCAAAGGT
1 TATAACCGAATGCATATATATACCTATCAAATACTTATAATCGAATGCATATACACATCAAAGGT
36759088 A
66 A
** *
36759089 TATAACTAAATGCATATATATACTTATCAAATA
1 TATAACCGAATGCATATATATACCTATCAAATA
36759122 AGATATAAAT
Statistics
Matches: 210, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
64 69 0.33
66 141 0.67
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.31
Consensus pattern (66 bp):
TATAACCGAATGCATATATATACCTATCAAATACTTATAATCGAATGCATATACACATCAAAGGT
A
Found at i:36759310 original size:40 final size:40
Alignment explanation
Indices: 36759261--36759358 Score: 126
Period size: 40 Copynumber: 2.4 Consensus size: 40
36759251 TCAGAACACT
36759261 GGCATTAAGCCTGCTAGACATTAAGTCTGAATAA-TTCACC
1 GGCATTAAGCCTGCTAGACATTAAGTCTGAA-AATTTCACC
* * **
36759301 GGCATTAAGCCTGATAGACATTAAGTTTGAAAATTTTCATT
1 GGCATTAAGCCTGCTAGACATTAAGTCTGAAAA-TTTCACC
*
36759342 GGCATTATGCCTGCTAG
1 GGCATTAAGCCTGCTAG
36759359 GCACAAAACC
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
39 2 0.04
40 29 0.58
41 19 0.38
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (40 bp):
GGCATTAAGCCTGCTAGACATTAAGTCTGAAAATTTCACC
Found at i:36759692 original size:79 final size:78
Alignment explanation
Indices: 36759507--36759761 Score: 338
Period size: 79 Copynumber: 3.3 Consensus size: 78
36759497 AAGTATTTAC
* * * * * * *
36759507 AATTCATACTTTTAATTCAACTCAAGT-ACTTGTATATGTATATAC--ATCTATTCGAATCACAC
1 AATTCATACATTTAATTCAATTCAA-TAACTTATACATGTATATACATATATATTCGAACCTCAC
* *
36759569 ACATACATATGTAA
65 ATATACATATATAA
* * *
36759583 AATTCATACCTTTAATTCAATTCAAGAACTTATACATGTATATACATATATATTTGAACCTCACA
1 AATTCATACATTTAATTCAATTCAATAACTTATACATGTATATACATATATATTCGAACCTCACA
36759648 TATACATATATATA
66 TATACATATATA-A
*
36759662 TATTTCATAC-TTTAATTCAATTCAATAACTTATACATGTATATACATATATATTCGAACCTCAC
1 -AATTCATACATTTAATTCAATTCAATAACTTATACATGTATATACATATATATTCGAACCTCAC
36759726 ATATACATATATAA
65 ATATACATATATAA
36759740 AATTCATACATTTAATTCAATT
1 AATTCATACATTTAATTCAATT
36759762 TATATACTTT
Statistics
Matches: 158, Mismatches: 15, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
76 39 0.25
77 8 0.05
78 37 0.23
79 66 0.42
80 8 0.05
ACGTcount: A:0.40, C:0.17, G:0.04, T:0.39
Consensus pattern (78 bp):
AATTCATACATTTAATTCAATTCAATAACTTATACATGTATATACATATATATTCGAACCTCACA
TATACATATATAA
Found at i:36761243 original size:63 final size:63
Alignment explanation
Indices: 36761166--36761303 Score: 179
Period size: 63 Copynumber: 2.2 Consensus size: 63
36761156 CAGGACAGAT
* **
36761166 TGGTGGTGGGCCCAGGCTAAATGTTGATTGTCAT-ACATATAGACCACAAACTATTGGCCCGAA
1 TGGTGGTGGGCCCAGGCCAAATGTTGAAAGTCATGA-ATATAGACCACAAACTATTGGCCCGAA
* * * * *
36761229 TGGTGGTTGGCCCAGGCCAAATGTTGAAAGTCATGAGTATCGGCCACAAACTCTTGGCCCGAA
1 TGGTGGTGGGCCCAGGCCAAATGTTGAAAGTCATGAATATAGACCACAAACTATTGGCCCGAA
*
36761292 TGGTGGAGGGCC
1 TGGTGGTGGGCC
36761304 TCATGGTGGA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
63 63 0.98
64 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (63 bp):
TGGTGGTGGGCCCAGGCCAAATGTTGAAAGTCATGAATATAGACCACAAACTATTGGCCCGAA
Found at i:36767888 original size:19 final size:19
Alignment explanation
Indices: 36767852--36767891 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
36767842 TAGCATTAAT
36767852 ATTAACTAAATGCAAATGA
1 ATTAACTAAATGCAAATGA
36767871 ATTAATCTAAATGC-AATGA
1 ATTAA-CTAAATGCAAATGA
36767890 AT
1 AT
36767892 GAGATGAGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30
Consensus pattern (19 bp):
ATTAACTAAATGCAAATGA
Found at i:36769321 original size:19 final size:19
Alignment explanation
Indices: 36769285--36769324 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
36769275 TAGCATTAAT
36769285 ATTAACTAAATGCAAATGA
1 ATTAACTAAATGCAAATGA
36769304 ATTAATCTAAATGC-AATGA
1 ATTAA-CTAAATGCAAATGA
36769323 AT
1 AT
36769325 GAGATGAGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30
Consensus pattern (19 bp):
ATTAACTAAATGCAAATGA
Found at i:36769858 original size:20 final size:20
Alignment explanation
Indices: 36769833--36769873 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
36769823 TGAGGCACAG
*
36769833 ACATTATAAACATGGATCAA
1 ACATTATAAACATGAATCAA
36769853 ACATTATAAACATGAATCAA
1 ACATTATAAACATGAATCAA
36769873 A
1 A
36769874 TAAACTTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.54, C:0.15, G:0.07, T:0.24
Consensus pattern (20 bp):
ACATTATAAACATGAATCAA
Found at i:36770207 original size:7 final size:7
Alignment explanation
Indices: 36770182--36770225 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
36770172 AAGGAGAGAA
36770182 AATGAACT
1 AATGAA-T
* *
36770190 AGTGAAG
1 AATGAAT
36770197 AATGAAT
1 AATGAAT
36770204 AATGAAT
1 AATGAAT
36770211 AATGAAT
1 AATGAAT
36770218 GAATGAAT
1 -AATGAAT
36770226 GATGGATGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
7 19 0.61
8 12 0.39
ACGTcount: A:0.52, C:0.02, G:0.20, T:0.25
Consensus pattern (7 bp):
AATGAAT
Found at i:36770208 original size:22 final size:22
Alignment explanation
Indices: 36770182--36770225 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
36770172 AAGGAGAGAA
*
36770182 AATGAACTAGTGAA-GAATGAAT
1 AATGAA-TAATGAATGAATGAAT
36770204 AATGAATAATGAATGAATGAAT
1 AATGAATAATGAATGAATGAAT
36770226 GATGGATGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.52, C:0.02, G:0.20, T:0.25
Consensus pattern (22 bp):
AATGAATAATGAATGAATGAAT
Found at i:36770218 original size:4 final size:4
Alignment explanation
Indices: 36770192--36770238 Score: 57
Period size: 4 Copynumber: 12.8 Consensus size: 4
36770182 AATGAACTAG
*
36770192 TGAA -GAA TGAA T-AA TGAA T-AA TGAA TGAA TGAA TG-A TGGA TGAA
1 TGAA TGAA TGAA TGAA TGAA TGAA TGAA TGAA TGAA TGAA TGAA TGAA
36770236 TGA
1 TGA
36770239 TATTGGAATG
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
3 12 0.32
4 26 0.68
ACGTcount: A:0.49, C:0.00, G:0.26, T:0.26
Consensus pattern (4 bp):
TGAA
Found at i:36770237 original size:11 final size:11
Alignment explanation
Indices: 36770196--36770239 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
36770186 AACTAGTGAA
*
36770196 GAATGAATAAT
1 GAATGAATGAT
36770207 GAAT-AATGAAT
1 GAATGAATG-AT
36770218 GAATGAATGAT
1 GAATGAATGAT
*
36770229 GGATGAATGAT
1 GAATGAATGAT
36770240 ATTGGAATGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 3 0.10
11 22 0.76
12 4 0.14
ACGTcount: A:0.48, C:0.00, G:0.25, T:0.27
Consensus pattern (11 bp):
GAATGAATGAT
Found at i:36770801 original size:16 final size:17
Alignment explanation
Indices: 36770780--36770812 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
36770770 AAATTAACTC
36770780 TACAAA-TTAATAAAAT
1 TACAAACTTAATAAAAT
*
36770796 TACAAACTTACTAAAAT
1 TACAAACTTAATAAAAT
36770813 CATGTTCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.30
Consensus pattern (17 bp):
TACAAACTTAATAAAAT
Found at i:36794846 original size:50 final size:50
Alignment explanation
Indices: 36794718--36794964 Score: 228
Period size: 50 Copynumber: 4.8 Consensus size: 50
36794708 GATAAAAACA
* * ** * * * **
36794718 TGCCAAAGCCATGTCCCATACATGGTCTTACATGGGATGTTTCCT-GTAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATTGG
* * * **
36794767 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATTGG
* * * *
36794817 TGCCCATGCCATGTCCCAGACATGGTCTTAC-GGAGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATG-GGACCTCTCATATTGG
* *
36794867 TGCCAATGCCATGTCCCTGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--T---TGG
*
36794923 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
36794965 TTACCCAAAT
Statistics
Matches: 160, Mismatches: 29, Indels: 11
0.80 0.14 0.05
Matches are distributed among these distances:
49 37 0.23
50 80 0.50
51 1 0.01
53 1 0.01
56 41 0.26
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATTGG
Found at i:36794902 original size:100 final size:103
Alignment explanation
Indices: 36794767--36794953 Score: 254
Period size: 100 Copynumber: 1.8 Consensus size: 103
36794757 TTTCCTGTAC
* * ** * *
36794767 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCAT-A-T-TGGTGCCCATGCCAT
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATAACTATGATGCCAATGCCAT
36794829 GTCCCAGACATGGTCTTACGGAGGACCTCTCATCTCGG
66 GTCCCAGACATGGTCTTACGGAGGACCTCTCATCTCGG
* *
36794867 TGCCAATGCCATGTCCCTGACATGGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAATGC
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATAA-CT--ATGATGCCAATGC
36794932 CATGTCCCAGACATGGTCTTAC
63 CATGTCCCAGACATGGTCTTAC
36794954 ATGGGATCTC
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
100 39 0.53
101 1 0.01
103 1 0.01
106 32 0.44
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.28
Consensus pattern (103 bp):
TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATAACTATGATGCCAATGCCAT
GTCCCAGACATGGTCTTACGGAGGACCTCTCATCTCGG
Found at i:36797127 original size:22 final size:22
Alignment explanation
Indices: 36797102--36797145 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
36797092 GTCTCTAAAA
36797102 ATATTGCAAATTGTCTCGAGTC
1 ATATTGCAAATTGTCTCGAGTC
* *
36797124 ATATTGCAAATTTTCTTGAGTC
1 ATATTGCAAATTGTCTCGAGTC
36797146 CACAGCTCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (22 bp):
ATATTGCAAATTGTCTCGAGTC
Found at i:36797429 original size:5 final size:5
Alignment explanation
Indices: 36797419--36797460 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
36797409 ATTCTTTCAA
36797419 GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT GT
1 GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT GT
36797461 GAGTGTGAGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.19, C:0.00, G:0.21, T:0.60
Consensus pattern (5 bp):
GTATT
Found at i:36798857 original size:126 final size:127
Alignment explanation
Indices: 36798703--36798951 Score: 351
Period size: 126 Copynumber: 2.0 Consensus size: 127
36798693 GCGCTTACAG
* * * *
36798703 AAAAAATGCCGCTAAAGTTCATGTTCTTTAGCGGCGCTTAGAAAAAAAGCCACTAAAGATCATGT
1 AAAAAACGCCGCTAAAGTACATGATCTTTAACGGCGCTTAGAAAAAAAGCCACTAAAGATCATGT
* *
36798768 TCTTTAGCGGCGCTTAGGAA-AAAACGCCACT-AAAGATCATGTTCTTTAGCGGTGCTTGTGC
66 TCTTTAGCGGCGCTTAGGAATAAAACGCCACTAAAAG-TCAAGTTCTTTAGCGGCGCTTGTGC
* * *
36798829 AAAAAACGCCGCTAAAG-ACAATGATCTTTAACGGCGCTTATAGAAAATGCCACTAAAGATCATG
1 AAAAAACGCCGCTAAAGTAC-ATGATCTTTAACGGCGCTTAGAAAAAAAGCCACTAAAGATCATG
* * *
36798893 TTCTTTAGCGGCGCTTGGGAATAAAACGCCGCTAAAAGTGAAGTTCTTTAGCGGCGCTT
65 TTCTTTAGCGGCGCTTAGGAATAAAACGCCACTAAAAGTCAAGTTCTTTAGCGGCGCTT
36798952 TATCTATAAA
Statistics
Matches: 108, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
125 1 0.01
126 75 0.69
127 28 0.26
128 4 0.04
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.26
Consensus pattern (127 bp):
AAAAAACGCCGCTAAAGTACATGATCTTTAACGGCGCTTAGAAAAAAAGCCACTAAAGATCATGT
TCTTTAGCGGCGCTTAGGAATAAAACGCCACTAAAAGTCAAGTTCTTTAGCGGCGCTTGTGC
Found at i:36798940 original size:43 final size:41
Alignment explanation
Indices: 36798702--36798951 Score: 279
Period size: 41 Copynumber: 6.0 Consensus size: 41
36798692 GGCGCTTACA
* * * *
36798702 GAAAAAATGCCGCTAAAGTTCATGTTCTTTAGCGGCGCTTA
1 GAAAAAACGCCACTAAAGATCATGTTCTTTAGCGGCGCTTG
*
36798743 GAAAAAAAGCCACTAAAGATCATGTTCTTTAGCGGCGCTTAG
1 GAAAAAACGCCACTAAAGATCATGTTCTTTAGCGGCGCTT-G
*
36798785 GAAAAAACGCCACTAAAGATCATGTTCTTTAGCGGTGCTTG
1 GAAAAAACGCCACTAAAGATCATGTTCTTTAGCGGCGCTTG
* * * *
36798826 TGCAAAAAACGCCGCTAAAGA-CAATGATCTTTAACGGCGCTTA
1 -G-AAAAAACGCCACTAAAGATC-ATGTTCTTTAGCGGCGCTTG
* * *
36798869 TAGAAAATGCCACTAAAGATCATGTTCTTTAGCGGCGCTTGG
1 GAAAAAACGCCACTAAAGATCATGTTCTTTAGCGGCGCTT-G
* * *
36798911 GAATAAAACGCCGCTAAA-AGTGAAGTTCTTTAGCGGCGCTT
1 GAA-AAAACGCCACTAAAGA-TCATGTTCTTTAGCGGCGCTT
36798952 TATCTATAAA
Statistics
Matches: 177, Mismatches: 24, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
41 70 0.40
42 43 0.24
43 64 0.36
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (41 bp):
GAAAAAACGCCACTAAAGATCATGTTCTTTAGCGGCGCTTG
Found at i:36798941 original size:84 final size:82
Alignment explanation
Indices: 36798690--36798951 Score: 301
Period size: 84 Copynumber: 3.1 Consensus size: 82
36798680 CTAACTTTTT
* * * *
36798690 GCGGCGCTTACAGAAAAAATGCCGCTAAAGTTCATGTTCTTTAGCGGCGCTT-AGAAAAAAAGCC
1 GCGGCGCTTACAG--AAAATGCCACTAAAGATCATGTTCTTTAGCGGCGCTTGGGAAAAAACGCC
* *
36798754 ACTAAAGATCATGTTCTTTA
64 GCTAAAG-TCAAGTTCTTTA
* * * * *
36798774 GCGGCGCTTAGGAAAAAACGCCACTAAAGATCATGTTCTTTAGCGGTGCTTGTGCAAAAAACGCC
1 GCGGCGCTTA-CAGAAAATGCCACTAAAGATCATGTTCTTTAGCGGCGCTTG-GGAAAAAACGCC
* *
36798839 GCTAAAGACAATGATCTTTA
64 GCTAAAGTCAA-GTTCTTTA
* *
36798859 ACGGCGCTTATAGAAAATGCCACTAAAGATCATGTTCTTTAGCGGCGCTTGGGAATAAAACGCCG
1 GCGGCGCTTACAGAAAATGCCACTAAAGATCATGTTCTTTAGCGGCGCTTGGGAA-AAAACGCCG
*
36798924 CTAAAAGTGAAGTTCTTTA
65 CT-AAAGTCAAGTTCTTTA
36798943 GCGGCGCTT
1 GCGGCGCTT
36798952 TATCTATAAA
Statistics
Matches: 149, Mismatches: 23, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
83 36 0.24
84 75 0.50
85 38 0.26
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (82 bp):
GCGGCGCTTACAGAAAATGCCACTAAAGATCATGTTCTTTAGCGGCGCTTGGGAAAAAACGCCGC
TAAAGTCAAGTTCTTTA
Found at i:36799006 original size:43 final size:43
Alignment explanation
Indices: 36798916--36799008 Score: 118
Period size: 43 Copynumber: 2.2 Consensus size: 43
36798906 CTTGGGAATA
* *
36798916 AAACGCCGCTAAAAGTGAAGTTCTTTAGCGGCGCTTTATCTAT
1 AAACGCCGCTAAAAGTGAAGTACTTTAGCGGCGCTTTATCTAG
* *
36798959 AAACGCCGCTAAAAGT-ATTGTACTTTAGCGGCGC-TTATTTCAG
1 AAACGCCGCTAAAAGTGA-AGTACTTTAGCGGCGCTTTATCT-AG
36799002 AAACGCC
1 AAACGCC
36799009 ACTATATGAT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
42 6 0.14
43 38 0.86
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (43 bp):
AAACGCCGCTAAAAGTGAAGTACTTTAGCGGCGCTTTATCTAG
Found at i:36799452 original size:21 final size:21
Alignment explanation
Indices: 36799428--36799475 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
36799418 TTCTTTTGAA
*
36799428 CCTCTGCTTCTCTCGCTGCAG
1 CCTCTGCTTCCCTCGCTGCAG
*
36799449 CCTCTGCTTCCCTCGCTGCCG
1 CCTCTGCTTCCCTCGCTGCAG
36799470 CCTCTG
1 CCTCTG
36799476 TTTTAAGTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.02, C:0.48, G:0.19, T:0.31
Consensus pattern (21 bp):
CCTCTGCTTCCCTCGCTGCAG
Found at i:36799531 original size:87 final size:87
Alignment explanation
Indices: 36799363--36799522 Score: 203
Period size: 87 Copynumber: 1.8 Consensus size: 87
36799353 TTTTGCTCTG
* * * *
36799363 CTCTGCTTCTCTCGATGCTGCATCTGCTTGAAGTCGTTGCTGTAGTTCTTCATATTTCTTTTGAA
1 CTCTGCTTCCCTCGATGCCGCATCTGCTTGAAGTCGTTGCTGAAGTTCTTCATATTTCCTTTGAA
*** *
36799428 CCTCTGCTTCTCTCGCTGCAGC
66 CCTCAAATTCGCTCGCTGCAGC
* * * * *
36799450 CTCTGCTTCCCTCGCTGCCGCCTCTGTTTTAAGTTGTTGCTGAAGTTCTTCATATTTCCTTTGAA
1 CTCTGCTTCCCTCGATGCCGCATCTGCTTGAAGTCGTTGCTGAAGTTCTTCATATTTCCTTTGAA
36799515 CCTCAAAT
66 CCTCAAAT
36799523 GTGGTCGCTT
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
87 61 1.00
ACGTcount: A:0.13, C:0.29, G:0.17, T:0.41
Consensus pattern (87 bp):
CTCTGCTTCCCTCGATGCCGCATCTGCTTGAAGTCGTTGCTGAAGTTCTTCATATTTCCTTTGAA
CCTCAAATTCGCTCGCTGCAGC
Found at i:36804159 original size:9 final size:9
Alignment explanation
Indices: 36804145--36804349 Score: 97
Period size: 9 Copynumber: 23.2 Consensus size: 9
36804135 TTTTTATGTA
36804145 TTATGTAAG
1 TTATGTAAG
*
36804154 TTATGTAAC
1 TTATGTAAG
36804163 TTATGTAAG
1 TTATGTAAG
* *
36804172 TTAT-CAAA
1 TTATGTAAG
*
36804180 TTAATGTATG
1 TT-ATGTAAG
* *
36804190 TTAAGT-TG
1 TTATGTAAG
36804198 -T-TGTAAG
1 TTATGTAAG
*
36804205 TTAT-TATG
1 TTATGTAAG
36804213 TATTATGTAAG
1 --TTATGTAAG
* *
36804224 TTATTTAAA
1 TTATGTAAG
*
36804233 TTATTTAAG
1 TTATGTAAG
*
36804242 TTGTGTAAG
1 TTATGTAAG
*
36804251 TTGTGTAAG
1 TTATGTAAG
* *
36804260 ATATTTAAG
1 TTATGTAAG
36804269 TTATGTAAG
1 TTATGTAAG
*
36804278 TTTTGT-A-
1 TTATGTAAG
36804285 TTATGTAAG
1 TTATGTAAG
*
36804294 TTATTTAAG
1 TTATGTAAG
* *
36804303 CTACGT-A-
1 TTATGTAAG
*
36804310 TAATGTAAG
1 TTATGTAAG
*
36804319 TCCATATGTTA-
1 T---TATGTAAG
36804330 TTATGTAAG
1 TTATGTAAG
*
36804339 TTATGAAAG
1 TTATGTAAG
36804348 TT
1 TT
36804350 TAAATATAAG
Statistics
Matches: 145, Mismatches: 35, Indels: 32
0.68 0.17 0.15
Matches are distributed among these distances:
6 2 0.01
7 10 0.07
8 20 0.14
9 97 0.67
10 7 0.05
11 4 0.03
12 5 0.03
ACGTcount: A:0.33, C:0.03, G:0.18, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:36804259 original size:36 final size:34
Alignment explanation
Indices: 36804211--36804301 Score: 119
Period size: 36 Copynumber: 2.6 Consensus size: 34
36804201 TAAGTTATTA
*
36804211 TGTATTATGTAAGTTATTTAAATTATTTAAGTTG
1 TGTATTATGTAAGTTATTTAAATTATGTAAGTTG
* * * *
36804245 TGTAAGTTGTGTAAGATATTTAAGTTATGTAAGTTT
1 TGT-A-TTATGTAAGTTATTTAAATTATGTAAGTTG
36804281 TGTATTATGTAAGTTATTTAA
1 TGTATTATGTAAGTTATTTAA
36804302 GCTACGTATA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
34 18 0.38
35 2 0.04
36 28 0.58
ACGTcount: A:0.32, C:0.00, G:0.18, T:0.51
Consensus pattern (34 bp):
TGTATTATGTAAGTTATTTAAATTATGTAAGTTG
Found at i:36806297 original size:26 final size:26
Alignment explanation
Indices: 36806268--36806325 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
36806258 TTAGATTTAT
*
36806268 ATTATTTTATAAGCTATAGAGTAAGA
1 ATTATTTGATAAGCTATAGAGTAAGA
*
36806294 ATTATTTGATAAGCTATAGAGTGAGA
1 ATTATTTGATAAGCTATAGAGTAAGA
36806320 ATTATT
1 ATTATT
36806326 ATGCAACGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.40, C:0.03, G:0.17, T:0.40
Consensus pattern (26 bp):
ATTATTTGATAAGCTATAGAGTAAGA
Found at i:36807445 original size:25 final size:24
Alignment explanation
Indices: 36807407--36807456 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 24
36807397 AGGGTACTAG
36807407 ATTTGGGGGATTTTTGGGGA-AAA
1 ATTTGGGGGATTTTTGGGGAGAAA
36807430 ATTTGGGGGGAATTTTTGGGGAGAAA
1 ATTT-GGGGG-ATTTTTGGGGAGAAA
36807456 A
1 A
36807457 GTGATTTCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 4 0.17
24 5 0.21
25 11 0.46
26 4 0.17
ACGTcount: A:0.28, C:0.00, G:0.40, T:0.32
Consensus pattern (24 bp):
ATTTGGGGGATTTTTGGGGAGAAA
Found at i:36808925 original size:7 final size:7
Alignment explanation
Indices: 36808913--36808994 Score: 65
Period size: 7 Copynumber: 10.9 Consensus size: 7
36808903 ACCCTTGACA
36808913 CCCTAAC
1 CCCTAAC
*
36808920 CCCTAAAT
1 CCCT-AAC
36808928 CCCTAAC
1 CCCTAAC
36808935 CCCTAAC
1 CCCTAAC
*
36808942 TCCTAAATC
1 CCCT-AA-C
36808951 TCCCTAAC
1 -CCCTAAC
36808959 CCCTAACCC
1 CCCTAA--C
* *
36808968 CCCAAAT
1 CCCTAAC
*
36808975 CACTAAC
1 CCCTAAC
36808982 CCCTAAC
1 CCCTAAC
36808989 CCCTAA
1 CCCTAA
36808995 ATTCCATACC
Statistics
Matches: 59, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
7 38 0.64
8 9 0.15
9 9 0.15
10 3 0.05
ACGTcount: A:0.32, C:0.50, G:0.00, T:0.18
Consensus pattern (7 bp):
CCCTAAC
Found at i:36808931 original size:15 final size:15
Alignment explanation
Indices: 36808913--36808987 Score: 64
Period size: 15 Copynumber: 4.9 Consensus size: 15
36808903 ACCCTTGACA
36808913 CCCTAACCCCTAAAT
1 CCCTAACCCCTAAAT
*
36808928 CCCTAACCCCTAACT
1 CCCTAACCCCTAAAT
*
36808943 -CCTAAATCTCCCT-AAC
1 CCCT-AA-C-CCCTAAAT
*
36808959 CCCTAACCCCCCAAAT
1 CCCTAA-CCCCTAAAT
*
36808975 CACTAACCCCTAA
1 CCCTAACCCCTAA
36808988 CCCCTAAATT
Statistics
Matches: 47, Mismatches: 8, Indels: 10
0.72 0.12 0.15
Matches are distributed among these distances:
14 3 0.06
15 25 0.53
16 12 0.26
17 7 0.15
ACGTcount: A:0.32, C:0.49, G:0.00, T:0.19
Consensus pattern (15 bp):
CCCTAACCCCTAAAT
Found at i:36808981 original size:47 final size:45
Alignment explanation
Indices: 36808913--36809013 Score: 132
Period size: 47 Copynumber: 2.2 Consensus size: 45
36808903 ACCCTTGACA
* * * *
36808913 CCCTAA-CCCCTAAATCCCTAACCCCTAACTCCTAAATCTCCCTAAC
1 CCCTAACCCCCCAAATCACTAACCCCTAACCCCTAAAT-TCCAT-AC
36808959 CCCTAACCCCCCAAATCACTAACCCCTAACCCCTAAATTCCATAC
1 CCCTAACCCCCCAAATCACTAACCCCTAACCCCTAAATTCCATAC
*
36809004 CCATAACCCC
1 CCCTAACCCC
36809014 TAAACATTAA
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
45 11 0.22
46 10 0.20
47 28 0.57
ACGTcount: A:0.32, C:0.50, G:0.00, T:0.19
Consensus pattern (45 bp):
CCCTAACCCCCCAAATCACTAACCCCTAACCCCTAAATTCCATAC
Found at i:36808984 original size:23 final size:22
Alignment explanation
Indices: 36808913--36809017 Score: 122
Period size: 22 Copynumber: 4.6 Consensus size: 22
36808903 ACCCTTGACA
36808913 CCCTAACCCCTAAATCCCTAAC
1 CCCTAACCCCTAAATCCCTAAC
*
36808935 CCCTAACTCCTAAATCTCCCTAAC
1 CCCTAACCCCTAAA--TCCCTAAC
* *
36808959 CCCTAACCCCCCAAATCACTAAC
1 CCCTAA-CCCCTAAATCCCTAAC
*
36808982 CCCTAACCCCTAAATTCC-ATAC
1 CCCTAACCCCTAAATCCCTA-AC
*
36809004 CCATAACCCCTAAA
1 CCCTAACCCCTAAA
36809018 CATTAATCCC
Statistics
Matches: 71, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.01
22 37 0.52
23 13 0.18
24 14 0.20
25 6 0.08
ACGTcount: A:0.33, C:0.48, G:0.00, T:0.19
Consensus pattern (22 bp):
CCCTAACCCCTAAATCCCTAAC
Found at i:36809686 original size:42 final size:41
Alignment explanation
Indices: 36809635--36809793 Score: 148
Period size: 41 Copynumber: 3.9 Consensus size: 41
36809625 CTAAAACTCC
*
36809635 AAAATTAGCGGCGCTT-TACAAACAAACGCCACTAAAAACCTT
1 AAAATTAGCGGCGCTTGTAC-AA-AAACGCCACTAAAAACCAT
** * * *
36809677 AATTTTAGCGGCGCATTGT-CAAAAACGCCGCGAAAAGCCCA-
1 AAAATTAGCGGCGC-TTGTACAAAAACGCCACTAAAA-ACCAT
*
36809718 AAAATTAGCGGCG-TTCAGGA-AAAAACGCCACTAAAAACCAT
1 AAAATTAGCGGCGCTT--GTACAAAAACGCCACTAAAAACCAT
* *
36809759 AACATTAGCGGCGCTTGTTCAAAAACGCCACTAAA
1 AAAATTAGCGGCGCTTGTACAAAAACGCCACTAAA
36809794 GCCCCCTGAA
Statistics
Matches: 93, Mismatches: 15, Indels: 19
0.73 0.12 0.15
Matches are distributed among these distances:
39 2 0.02
40 4 0.04
41 65 0.70
42 18 0.19
43 3 0.03
44 1 0.01
ACGTcount: A:0.40, C:0.25, G:0.17, T:0.18
Consensus pattern (41 bp):
AAAATTAGCGGCGCTTGTACAAAAACGCCACTAAAAACCAT
Found at i:36809744 original size:82 final size:82
Alignment explanation
Indices: 36809616--36809787 Score: 226
Period size: 82 Copynumber: 2.1 Consensus size: 82
36809606 CGTTTCCATC
* * * **
36809616 AAAACGCCGCTAAAACTCCAAAATTAGCGGCGCTTTACAAACAAACGCCACTAAAAACCTTAATT
1 AAAACGCCGCGAAAACTCCAAAATTAGCGGCGCTTCACAAACAAACGCCACTAAAAACCATAACA
36809681 TTAGCGGCGCATTG-TCA
66 TTAGCGGCGC-TTGTTCA
*
36809698 AAAACGCCGCGAAAAGC-CCAAAAATTAGCGGCG-TTCAGGAAA-AAACGCCACTAAAAACCATA
1 AAAACGCCGCGAAAA-CTCC-AAAATTAGCGGCGCTTCA-CAAACAAACGCCACTAAAAACCATA
36809760 ACATTAGCGGCGCTTGTTCA
63 ACATTAGCGGCGCTTGTTCA
36809780 AAAACGCC
1 AAAACGCC
36809788 ACTAAAGCCC
Statistics
Matches: 80, Mismatches: 6, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
81 3 0.04
82 60 0.75
83 17 0.21
ACGTcount: A:0.40, C:0.27, G:0.17, T:0.17
Consensus pattern (82 bp):
AAAACGCCGCGAAAACTCCAAAATTAGCGGCGCTTCACAAACAAACGCCACTAAAAACCATAACA
TTAGCGGCGCTTGTTCA
Found at i:36813313 original size:16 final size:16
Alignment explanation
Indices: 36813292--36813345 Score: 57
Period size: 16 Copynumber: 3.8 Consensus size: 16
36813282 AGAACTAGAT
36813292 AAAATTTGAAATCTTG
1 AAAATTTGAAATCTTG
36813308 AAAA-TT---A--TTG
1 AAAATTTGAAATCTTG
*
36813318 AAAATTTGAAATCTTT
1 AAAATTTGAAATCTTG
36813334 AAAATTTGAAAT
1 AAAATTTGAAAT
36813346 TATTTAATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 12
0.70 0.02 0.27
Matches are distributed among these distances:
10 7 0.23
11 2 0.06
12 1 0.03
14 1 0.03
15 2 0.06
16 18 0.58
ACGTcount: A:0.48, C:0.04, G:0.09, T:0.39
Consensus pattern (16 bp):
AAAATTTGAAATCTTG
Found at i:36813488 original size:7 final size:7
Alignment explanation
Indices: 36813461--36813527 Score: 62
Period size: 7 Copynumber: 9.0 Consensus size: 7
36813451 CACTAATTAT
36813461 CCTAAAC
1 CCTAAAC
36813468 CCATAAACC
1 CC-TAAA-C
36813477 CCTAAAC
1 CCTAAAC
36813484 CCTAAAC
1 CCTAAAC
*
36813491 CCTTAATC
1 CC-TAAAC
36813499 CCTAAAC
1 CCTAAAC
**
36813506 TTTAAAC
1 CCTAAAC
*
36813513 CATAAAAC
1 CCT-AAAC
36813521 CCTAAAC
1 CCTAAAC
36813528 TATGTCCACT
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
7 26 0.53
8 20 0.41
9 3 0.06
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.19
Consensus pattern (7 bp):
CCTAAAC
Found at i:36813491 original size:15 final size:15
Alignment explanation
Indices: 36813461--36813527 Score: 64
Period size: 15 Copynumber: 4.5 Consensus size: 15
36813451 CACTAATTAT
36813461 CCTAAACCCATAAACC
1 CCTAAACCC-TAAACC
36813477 CCTAAACCCTAAACC
1 CCTAAACCCTAAACC
* *
36813492 CTTAATCCCTAAA-C
1 CCTAAACCCTAAACC
** * *
36813506 TTTAAACCATAAAAC
1 CCTAAACCCTAAACC
36813521 CCTAAAC
1 CCTAAAC
36813528 TATGTCCACT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
14 11 0.26
15 23 0.53
16 9 0.21
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.19
Consensus pattern (15 bp):
CCTAAACCCTAAACC
Found at i:36813511 original size:22 final size:22
Alignment explanation
Indices: 36813462--36813528 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
36813452 ACTAATTATC
* *
36813462 CTAAACCCATAAACCCCTAAACC
1 CTAAA-CCATAAAACCCTAAACT
* * *
36813485 CTAAACCCTTAATCCCTAAACT
1 CTAAACCATAAAACCCTAAACT
*
36813507 TTAAACCATAAAACCCTAAACT
1 CTAAACCATAAAACCCTAAACT
36813529 ATGTCCACTT
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
22 31 0.86
23 5 0.14
ACGTcount: A:0.43, C:0.36, G:0.00, T:0.21
Consensus pattern (22 bp):
CTAAACCATAAAACCCTAAACT
Found at i:36813556 original size:7 final size:7
Alignment explanation
Indices: 36813536--36813587 Score: 50
Period size: 7 Copynumber: 7.1 Consensus size: 7
36813526 ACTATGTCCA
36813536 CTTAACC
1 CTTAACC
36813543 TCTTAACC
1 -CTTAACC
36813551 CTTAACC
1 CTTAACC
*
36813558 CCTAGACC
1 CTTA-ACC
*
36813566 CTCAACC
1 CTTAACC
**
36813573 CTTAAAT
1 CTTAACC
36813580 CTTAACC
1 CTTAACC
36813587 C
1 C
36813588 CTAAACCATA
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
7 23 0.66
8 12 0.34
ACGTcount: A:0.29, C:0.42, G:0.02, T:0.27
Consensus pattern (7 bp):
CTTAACC
Found at i:36813611 original size:22 final size:22
Alignment explanation
Indices: 36813589--36813666 Score: 72
Period size: 22 Copynumber: 3.6 Consensus size: 22
36813579 TCTTAACCCC
*
36813589 TAAACCATAAACCC-CAAATCCC
1 TAAACCATAAACCCTC-AATCCA
* *
36813611 TAAA-CATCAACCCTTGAA-CCA
1 TAAACCATAAACCC-TCAATCCA
*
36813632 TAAACCATAATCCCTCAATCCA
1 TAAACCATAAACCCTCAATCCA
*
36813654 TAATCCATAAACC
1 TAAACCATAAACC
36813667 TTAAAATATT
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
21 17 0.39
22 27 0.61
ACGTcount: A:0.44, C:0.36, G:0.01, T:0.19
Consensus pattern (22 bp):
TAAACCATAAACCCTCAATCCA
Found at i:36813639 original size:7 final size:7
Alignment explanation
Indices: 36813627--36813811 Score: 93
Period size: 7 Copynumber: 25.1 Consensus size: 7
36813617 TCAACCCTTG
36813627 AACCATA
1 AACCATA
36813634 AACCATA
1 AACCATA
* *
36813641 ATCCCTCA
1 AACCAT-A
*
36813649 ATCCATA
1 AACCATA
*
36813656 ATCCATA
1 AACCATA
*
36813663 AACCTTA
1 AACCATA
** *
36813670 AAATATT
1 AACCATA
36813677 AACTCATA
1 AAC-CATA
*
36813685 AACTATA
1 AACCATA
*
36813692 AACCCCTA
1 AA-CCATA
*
36813700 AACCTTA
1 AACCATA
*
36813707 AACCCTA
1 AACCATA
36813714 AACTCATA
1 AAC-CATA
* *
36813722 ATCCCTA
1 AACCATA
36813729 AACCCATGCA
1 AA-CCAT--A
36813739 TAATCCATA
1 -AA-CCATA
*
36813748 AACCTTA
1 AACCATA
**
36813755 AAATATA
1 AACCATA
36813762 AACCATA
1 AACCATA
36813769 AACTC-TA
1 AAC-CATA
36813776 AACCATA
1 AACCATA
* *
36813783 TACCCTA
1 AACCATA
36813790 AACCATA
1 AACCATA
36813797 AACCATA
1 AACCATA
*
36813804 AACTATA
1 AACCATA
36813811 A
1 A
36813812 TGATAATTAA
Statistics
Matches: 134, Mismatches: 34, Indels: 20
0.71 0.18 0.11
Matches are distributed among these distances:
6 1 0.01
7 98 0.73
8 27 0.20
9 1 0.01
10 1 0.01
11 6 0.04
ACGTcount: A:0.48, C:0.29, G:0.01, T:0.23
Consensus pattern (7 bp):
AACCATA
Found at i:36813701 original size:15 final size:14
Alignment explanation
Indices: 36813660--36813731 Score: 56
Period size: 15 Copynumber: 4.9 Consensus size: 14
36813650 TCCATAATCC
* *
36813660 ATAAACCTTAAAAT
1 ATAAACCCTAAACT
* *
36813674 ATTAACTCATAAACT
1 ATAAAC-CCTAAACT
36813689 ATAAACCCCTAAACCT
1 ATAAA-CCCTAAA-CT
36813705 -TAAACCCTAAACT
1 ATAAACCCTAAACT
*
36813718 CATAATCCCTAAAC
1 -ATAAACCCTAAAC
36813732 CCATGCATAA
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
13 2 0.04
14 12 0.26
15 30 0.64
16 3 0.06
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (14 bp):
ATAAACCCTAAACT
Found at i:36813714 original size:14 final size:14
Alignment explanation
Indices: 36813589--36813811 Score: 88
Period size: 14 Copynumber: 15.2 Consensus size: 14
36813579 TCTTAACCCC
* *
36813589 TAAACCATAAACCC
1 TAAACCCTAAACCA
*
36813603 CAAATCCCTAAA-CA
1 TAAA-CCCTAAACCA
* *
36813617 TCAACCCTTGAACCA
1 TAAACCC-TAAACCA
* * *
36813632 TAAACCATAATCCC
1 TAAACCCTAAACCA
* * *
36813646 TCAATCCATAATCCA
1 T-AAACCCTAAACCA
* **
36813661 TAAACCTTAAAATA
1 TAAACCCTAAACCA
* * *
36813675 TTAACTCATAAACTA
1 TAAAC-CCTAAACCA
*
36813690 TAAACCCCTAAACCT
1 TAAA-CCCTAAACCA
36813705 TAAACCCTAAACTCA
1 TAAACCCTAAAC-CA
*
36813720 TAATCCCTAAACCCA
1 TAAACCCTAAA-CCA
* *
36813735 TGCATAATCCATAAACCT
1 T--A-AA-CCCTAAACCA
***
36813753 TAAAATATAAACCA
1 TAAACCCTAAACCA
*
36813767 TAAACTCTAAACCA
1 TAAACCCTAAACCA
*
36813781 TATACCCTAAACCA
1 TAAACCCTAAACCA
* *
36813795 TAAACCATAAACTA
1 TAAACCCTAAACCA
36813809 TAA
1 TAA
36813812 TGATAATTAA
Statistics
Matches: 157, Mismatches: 40, Indels: 24
0.71 0.18 0.11
Matches are distributed among these distances:
13 3 0.02
14 79 0.50
15 61 0.39
16 3 0.02
17 1 0.01
18 4 0.03
19 6 0.04
ACGTcount: A:0.47, C:0.30, G:0.01, T:0.22
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:36814029 original size:14 final size:14
Alignment explanation
Indices: 36814010--36814036 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
36814000 TACGTGTCAT
36814010 TAGTTTAGGGTTTA
1 TAGTTTAGGGTTTA
36814024 TAGTTTAGGGTTT
1 TAGTTTAGGGTTT
36814037 GGGATTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.52
Consensus pattern (14 bp):
TAGTTTAGGGTTTA
Found at i:36814996 original size:154 final size:155
Alignment explanation
Indices: 36814701--36814996 Score: 355
Period size: 154 Copynumber: 1.9 Consensus size: 155
36814691 GGCGTTTTTC
* * *
36814701 AAAAAGCGTCGCTAATACTCAATCTATTGCGGCATTTTCCACAAAGCACCGCTAGTGCCAATGAA
1 AAAAAGCGCCGCTAATACTCAATCTATTGCGGCATTTTCCACAAAGCACCGCTAATGCCAATAAA
* ** * * * *
36814766 GCTCAAAGTAAAACGACGTAGTTCTTCTTAATCTTTTAGCGGCGTTTTTGAAAAAACACCGTATA
66 GCTCAAAATAAAACGACGTAGTTCGACTTAATCTTTTAACGGCATTTCTGAAAAAACACCGTAAA
36814831 GGTCGACCTATAGCAGCGCTCTATT
131 GGTCGACCTATAGCAGCGCTCTATT
* * * * ** * * *
36814856 AAAAA-CGCCGCTAATGCTCGATCTATTGTGGCGTTTTTGAGAAAGCGCCGCTAATGCCACTAAA
1 AAAAAGCGCCGCTAATACTCAATCTATTGCGGCATTTTCCACAAAGCACCGCTAATGCCAATAAA
*
36814920 GCTCAAAAT-AAACGACGTCGTTCGACTTAATCTTTTAACGGCATTTCT-ATAAAAACACCGCTA
66 GCTCAAAATAAAACGACGTAGTTCGACTTAATCTTTTAACGGCATTTCTGA-AAAAACACCG-TA
* *
36814983 AAGTTCGATCTATA
129 AAGGTCGACCTATA
36814997 ACGCCGCTAA
Statistics
Matches: 117, Mismatches: 22, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
152 1 0.01
153 43 0.37
154 68 0.58
155 5 0.04
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.28
Consensus pattern (155 bp):
AAAAAGCGCCGCTAATACTCAATCTATTGCGGCATTTTCCACAAAGCACCGCTAATGCCAATAAA
GCTCAAAATAAAACGACGTAGTTCGACTTAATCTTTTAACGGCATTTCTGAAAAAACACCGTAAA
GGTCGACCTATAGCAGCGCTCTATT
Found at i:36815062 original size:12 final size:12
Alignment explanation
Indices: 36815045--36815072 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
36815035 TTTTCTATTC
36815045 AAACGCCGCTAA
1 AAACGCCGCTAA
36815057 AAACGCCGCTAA
1 AAACGCCGCTAA
36815069 AAAC
1 AAAC
36815073 CTGTTTTGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.32, G:0.14, T:0.07
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:36817909 original size:22 final size:22
Alignment explanation
Indices: 36817884--36817927 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
36817874 GTCTCTAAAA
36817884 ATATTGCAAATTGTCTCGAGTC
1 ATATTGCAAATTGTCTCGAGTC
* *
36817906 ATATTGCAAATTTTCTTGAGTC
1 ATATTGCAAATTGTCTCGAGTC
36817928 CACAGCTCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (22 bp):
ATATTGCAAATTGTCTCGAGTC
Found at i:36818211 original size:5 final size:5
Alignment explanation
Indices: 36818201--36818242 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
36818191 ATTCTTTCAA
36818201 GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT GT
1 GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT GT
36818243 GAGTGTGAGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.19, C:0.00, G:0.21, T:0.60
Consensus pattern (5 bp):
GTATT
Found at i:36819591 original size:17 final size:18
Alignment explanation
Indices: 36819561--36819596 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
36819551 CAAATCTATT
36819561 ATTTTTTAGAAATTTTAA
1 ATTTTTTAGAAATTTTAA
*
36819579 ATTTTTTA-TAATTTTAA
1 ATTTTTTAGAAATTTTAA
36819596 A
1 A
36819597 AAAAAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (18 bp):
ATTTTTTAGAAATTTTAA
Found at i:36826074 original size:23 final size:23
Alignment explanation
Indices: 36826042--36826085 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
36826032 TTAGAAAAAA
36826042 ATTTTAAAAAATTAA-AAAAATGT
1 ATTTT-AAAAATTAATAAAAATGT
*
36826065 ATTTTTAAAATTAATAAAAAT
1 ATTTTAAAAATTAATAAAAAT
36826086 ATATATACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (23 bp):
ATTTTAAAAATTAATAAAAATGT
Found at i:36826747 original size:19 final size:20
Alignment explanation
Indices: 36826723--36826765 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
36826713 TAGATGTGCA
* *
36826723 TTTTATTAATT-TTTATATT
1 TTTTATAAATTATTAATATT
36826742 TTTTATAAATTATTAATATT
1 TTTTATAAATTATTAATATT
36826762 TTTT
1 TTTT
36826766 TGACTTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (20 bp):
TTTTATAAATTATTAATATT
Found at i:36841585 original size:26 final size:24
Alignment explanation
Indices: 36841556--36841620 Score: 60
Period size: 24 Copynumber: 2.6 Consensus size: 24
36841546 TAAAATACAT
36841556 ATATATATTATAAAGA-ATGCATAAAC
1 ATATATATTATAAA-ATATG-A-AAAC
* * *
36841582 ATATAGACTATAAAATATGAAAAT
1 ATATATATTATAAAATATGAAAAC
*
36841606 ATAAATATTATAAAA
1 ATATATATTATAAAA
36841621 ATATAAATGT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
24 15 0.47
25 2 0.06
26 15 0.47
ACGTcount: A:0.58, C:0.05, G:0.06, T:0.31
Consensus pattern (24 bp):
ATATATATTATAAAATATGAAAAC
Found at i:36841606 original size:8 final size:7
Alignment explanation
Indices: 36841576--36841645 Score: 50
Period size: 7 Copynumber: 8.9 Consensus size: 7
36841566 TAAAGAATGC
36841576 ATAAACAT
1 ATAAA-AT
* *
36841584 ATAGACT
1 ATAAAAT
36841591 ATAAAAT
1 ATAAAAT
36841598 ATGAAAAT
1 AT-AAAAT
36841606 ATAAATATT
1 ATAAA-A-T
36841615 ATAAAAAT
1 AT-AAAAT
36841623 ATAAATGTAT
1 ATAAA---AT
36841633 ATAAAAT
1 ATAAAAT
36841640 ATAAAA
1 ATAAAA
36841646 ACTATGAAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 15
0.73 0.06 0.21
Matches are distributed among these distances:
7 22 0.43
8 15 0.29
9 4 0.08
10 10 0.20
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.30
Consensus pattern (7 bp):
ATAAAAT
Found at i:36841623 original size:17 final size:17
Alignment explanation
Indices: 36841596--36841644 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 17
36841586 AGACTATAAA
*
36841596 ATATGAAAATATAAATAT
1 ATAT-AAAATATAAATGT
36841614 -TATAAAAATATAAATGT
1 ATAT-AAAATATAAATGT
36841631 ATATAAAATATAAA
1 ATATAAAATATAAA
36841645 AACTATGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 25 0.89
18 3 0.11
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (17 bp):
ATATAAAATATAAATGT
Found at i:36841624 original size:25 final size:23
Alignment explanation
Indices: 36841593--36841681 Score: 67
Period size: 25 Copynumber: 3.7 Consensus size: 23
36841583 TATAGACTAT
36841593 AAAATATGAAAATATAAATATTATA
1 AAAATATGAAAATATAAA-A-TATA
36841618 AAAATAT-AAATGTATATAAAATATA
1 AAAATATGAAA---ATATAAAATATA
* * *
36841643 AAAACTATGAAAAGAAAAGAAAATA
1 AAAA-TATGAAAATATAA-AATATA
36841668 AAAATA--AAAATATA
1 AAAATATGAAAATATA
36841682 TACATACTAT
Statistics
Matches: 53, Mismatches: 5, Indels: 15
0.73 0.07 0.21
Matches are distributed among these distances:
22 6 0.11
24 9 0.17
25 24 0.45
26 4 0.08
27 10 0.19
ACGTcount: A:0.69, C:0.01, G:0.06, T:0.25
Consensus pattern (23 bp):
AAAATATGAAAATATAAAATATA
Found at i:36841655 original size:17 final size:16
Alignment explanation
Indices: 36841593--36841680 Score: 58
Period size: 17 Copynumber: 5.4 Consensus size: 16
36841583 TATAGACTAT
36841593 AAAATATGAAAATATA
1 AAAATATGAAAATATA
* *
36841609 AATATTATAAAAATATA
1 AA-AATATGAAAATATA
*
36841626 AATGTATAT-AAAATATA
1 AA--AATATGAAAATATA
*
36841643 AAAACTATGAAAAGA-A
1 AAAA-TATGAAAATATA
*
36841659 AAGAAAAT-AAAA-ATA
1 AA-AATATGAAAATATA
36841674 AAAATAT
1 AAAATAT
36841681 ATACATACTA
Statistics
Matches: 57, Mismatches: 9, Indels: 14
0.71 0.11 0.17
Matches are distributed among these distances:
14 5 0.09
15 8 0.14
16 10 0.18
17 31 0.54
18 3 0.05
ACGTcount: A:0.68, C:0.01, G:0.06, T:0.25
Consensus pattern (16 bp):
AAAATATGAAAATATA
Found at i:36841768 original size:3 final size:3
Alignment explanation
Indices: 36841760--36841844 Score: 61
Period size: 3 Copynumber: 28.7 Consensus size: 3
36841750 ATATAAATAC
* *
36841760 AAT AAT AAT -AT AAT AAAC AAA AAT AAT AAT AAT AAT AAT AAT -AT
1 AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
36841804 AGT AAT AAT TAT ACT AAT AA- ACAGT ATT AAT AAT -AT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT A-A-T AAT AAT AAT AAT AAT AA
36841845 AAAAACCTAA
Statistics
Matches: 64, Mismatches: 11, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
2 7 0.11
3 54 0.84
4 2 0.03
5 1 0.02
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:36843380 original size:129 final size:128
Alignment explanation
Indices: 36843222--36843684 Score: 463
Period size: 129 Copynumber: 3.6 Consensus size: 128
36843212 ATTGGCTTTA
* * * *
36843222 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATACGCCATCTTCAATCTGCCCCACTGCAACTTC
1 ATCTGCT-CTCTGCAACTTCAGAGAGATAAGAT-CGCCATCTTCAATCCGCTCCACTGCAACTTC
* * * * * *
36843287 AGGGGGATAAGATTTGCTTT-TTTAGTCTGCTTCTCTGCAATTTCAGGGAGATAAGACTTGATGC
64 AGGGAGATAGGA-TTGGTTTCTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATGC
36843351 G
128 G
* *** *
36843352 ATCTACTCTCTGCAACTTCAGAGAGATAAGATCTGTGGT-TTAAATCCGCTCCACTGCAACTTCA
1 ATCTGCTCTCTGCAACTTCAGAGAGATAAGATC-GCCATCTTCAATCCGCTCCACTGCAACTTCA
* *
36843416 GGGAGATAGGATTGGTTTCTTCT-GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCT
65 GGGAGATAGGATTGGTTTCTT-TAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATGCG
* * * ** *
36843480 ATATGCTCTCTGCAACCTCAGAGAGATAAGACTTGGTATCTTCAATCCACTCCACTGCAACTTCA
1 ATCTGCTCTCTGCAACTTCAGAGAGATAAGA-TCGCCATCTTCAATCCGCTCCACTGCAACTTCA
* * * * * *
36843545 GGGAAATAGGATTGGTTTCTTCAGTCTACTCCGCTGCAACCTCAGGGAGATAAGAC-TGTATGTG
65 GGGAGATAGGATTGGTTTCTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-ATGCG
* * * ** * * *
36843609 ATCCGCTCTACTGCAACTTCATAGAGATAAGATCTG--AT-TTTAATATGCTCCATTGTAACTTT
1 ATCTGCTCT-CTGCAACTTCAGAGAGATAAGATC-GCCATCTTCAATCCGCTCCACTGCAACTTC
36843671 AGGGAGATAGGATT
64 AGGGAGATAGGATT
36843685 ATTTTTTTCA
Statistics
Matches: 277, Mismatches: 47, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
127 36 0.13
128 103 0.37
129 111 0.40
130 27 0.10
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (128 bp):
ATCTGCTCTCTGCAACTTCAGAGAGATAAGATCGCCATCTTCAATCCGCTCCACTGCAACTTCAG
GGAGATAGGATTGGTTTCTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATGCG
Found at i:36843413 original size:44 final size:42
Alignment explanation
Indices: 36843137--36843679 Score: 245
Period size: 44 Copynumber: 12.7 Consensus size: 42
36843127 GTATGATGCG
* * * *
36843137 ATCTGCT-CTCTGCAACCTCAGAGAAATAAGATCTGAT-TTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTG-TGTTTA
* * * *
36843178 ATCCGCTCCACTGCAACTTCAGGGAAATAGGAT-TATTGGCTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCT-GT-G-TTTA
* *
36843222 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATAC-GCCATCTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-CTG---TGTTTA
* * * *
36843267 ATCTGCCCCACTGCAACTTCAGGGGGATAAGATTTGCTTTTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTG--TGTTTA
* * * * ***
36843311 GTCTGCTTCTCTGCAATTTCAGGGAGATAAGA-CT-TGATGCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTG-TTTA
* * *
36843352 ATCTACT-CTCTGCAACTTCAGAGAGATAAGATCTGTGGTTTAA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGT-GTTT-A
* * * *
36843395 ATCCGCTCCACTGCAACTTCAGGGAGATAGGAT-TGGTTTCTTCT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCT-GTGT-TT-A
* *
36843439 GTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTAGATG-CT-
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCT-G-TGTTTA
* * * * *
36843480 ATATGCT-CTCTGCAACCTCAGAGAGATAAGA-CTTGGTATCTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATC-T-GTGT-TT-A
** * * *
36843524 ATCCACTCCACTGCAACTTCAGGGAAATAGGAT-TGGTTTCTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCT-GTGT-TT-A
* * * * * * *
36843568 GTCTACTCCGCTGCAACCTCAGGGAGATAAGA-CTGTATGTG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGTTTA
* * **
36843609 ATCCGCTCTACTGCAACTTCATAGAGATAAGATCTGAT-TTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTG-TGTTTA
* * * *
36843651 ATATGCTCCATTGTAACTTTAGGGAGATA
1 ATCTGCTCCACTGCAACTTCAGGGAGATA
36843680 GGATTATTTT
Statistics
Matches: 377, Mismatches: 94, Indels: 61
0.71 0.18 0.11
Matches are distributed among these distances:
40 46 0.12
41 47 0.12
42 51 0.14
43 14 0.04
44 163 0.43
45 55 0.15
47 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (42 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGTTTA
Found at i:36843443 original size:128 final size:128
Alignment explanation
Indices: 36843274--36843684 Score: 462
Period size: 128 Copynumber: 3.2 Consensus size: 128
36843264 TCAATCTGCC
* * * * * *
36843274 CCACTGCAACTTCAGGGGGATAAGATTTGCTTT-TT-TAGTCTGCTTCTCTGCAATTTCAGGGAG
1 CCACTGCAACTTCAGGGAGATAGGA-TTGGTTTCTTCT-GTCTGCTCCACTGCAACTTCAGGGAG
*
36843337 ATAAGACTTGATGCGATCTACTCTCTGCAACTTCAGAGAGATAAGATCTGTGGTTTAAATCCGCT
64 ATAAGACTTGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTGGTTTAAATCCGCT
36843402 CCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGAT
1 CCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGAT
* * * * * *
36843467 AAGACTAGATGCTATATGCTCTCTGCAACCTCAGAGAGATAAGA-CT-TGGTATCTTCAATCCAC
66 AAGACTTGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTGG--T-TTAAATCCGC
36843530 T
128 T
* * * * *
36843531 CCACTGCAACTTCAGGGAAATAGGATTGGTTTCTTCAGTCTACTCCGCTGCAACCTCAGGGAGAT
1 CCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGAT
* * *
36843596 AAGAC-TGTATGTGATCCGCTCTACTGCAACTTCATAGAGATAAGATCTGAT--TTTAATAT--G
66 AAGACTTG-ATGCGATCTGCTCT-CTGCAACTTCAGAGAGATAAGATCTG-TGGTTTAA-ATCCG
36843656 CT
127 CT
* * *
36843658 CCATTGTAACTTTAGGGAGATAGGATT
1 CCACTGCAACTTCAGGGAGATAGGATT
36843685 ATTTTTTTCA
Statistics
Matches: 241, Mismatches: 31, Indels: 23
0.82 0.11 0.08
Matches are distributed among these distances:
126 3 0.01
127 33 0.14
128 94 0.39
129 88 0.37
130 20 0.08
131 2 0.01
133 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (128 bp):
CCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGAT
AAGACTTGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTGGTTTAAATCCGCT
Found at i:36843584 original size:173 final size:170
Alignment explanation
Indices: 36843131--36843599 Score: 444
Period size: 173 Copynumber: 2.7 Consensus size: 170
36843121 AGATAAGTAT
* * * *
36843131 GATGCGATCTGCTCTCTGCAACCTCAGAGAAATAAGA-TCTGATTTTAATCCGCTCCACTGCAAC
1 GATGCTATCTGCTCTCTGCAACCTCAGAGAGATAAGACT-TGATTTCAATCCACTCCACTGCAAC
* * *
36843195 TTCAGGGAAATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATACGCC
65 TTCAGGGAAATAGGATTGTT-TCTTAAATCTGCTCCACTGCAACTTCAGGGAGATAAGATACGCC
* * *
36843260 ATCTTCAATCTGCCCCACTGCAACTTCAGGGGGATAAGATTT
129 ATCTTCAATCTGCCCCACTGCAACTTCAGGGAGATAAGACTA
* ** ** * * * * *
36843302 GCTTTTTTAGTCTGCTTCTCTGCAATTTCAGGGAGATAAGACTTGA-TGCGATCTACT-CTCTGC
1 G--ATGCTA-TCTGC-TCTCTGCAACCTCAGAGAGATAAGACTTGATTTCAATCCACTCCACTGC
* * * * * *
36843365 AACTTCAGAGAGATAAGATCTGTGGT-TTAAATCCGCTCCACTGCAACTTCAGGGAGATAGGAT-
62 AACTTCAGGGAAATAGGAT-TGT-TTCTTAAATCTGCTCCACTGCAACTTCAGGGAGATAAGATA
* *** ** *
36843428 TGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTA
125 CGCCATCTTCAATCTGCCCCACTGCAACTTCAGGGAGATAAGACTA
*
36843474 GATGCTATATGCTCTCTGCAACCTCAGAGAGATAAGACTTGGTATCTTCAATCCACTCCACTGCA
1 GATGCTATCTGCTCTCTGCAACCTCAGAGAGATAAGACTT-G-AT-TTCAATCCACTCCACTGCA
* * * * *
36843539 ACTTCAGGGAAATAGGATTGGTTTCTTCAGTCTACTCCGCTGCAACCTCAGGGAGATAAGA
63 ACTTCAGGGAAATAGGATT-GTTTCTTAAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
36843600 CTGTATGTGA
Statistics
Matches: 229, Mismatches: 55, Indels: 26
0.74 0.18 0.08
Matches are distributed among these distances:
168 25 0.11
169 5 0.02
170 4 0.02
171 1 0.00
172 47 0.21
173 109 0.48
174 13 0.06
175 24 0.10
176 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (170 bp):
GATGCTATCTGCTCTCTGCAACCTCAGAGAGATAAGACTTGATTTCAATCCACTCCACTGCAACT
TCAGGGAAATAGGATTGTTTCTTAAATCTGCTCCACTGCAACTTCAGGGAGATAAGATACGCCAT
CTTCAATCTGCCCCACTGCAACTTCAGGGAGATAAGACTA
Found at i:36843973 original size:100 final size:100
Alignment explanation
Indices: 36843691--36843998 Score: 379
Period size: 100 Copynumber: 3.1 Consensus size: 100
36843681 GATTATTTTT
* * * * * *
36843691 TTCAAT-TTGTTTAACTGCAATGTCATGGAAACAAGATTCGTCGTCGT-GACTTCAATTTGTTCC
1 TTCAATCTT-TTTAATTGCAATGTCAGGGAAACCAGATCCGCCGTCGTAG-CTTCAATCTGTTCC
* * *
36843754 ACTGCACCACCAGGGAAGTAAGATCTGCCATTGTGGC
64 ACTGCACCACCAAGGAAGTAAGATTTGCCGTTGTGGC
* * *
36843791 TTCAATCTTTTTAATTGCAATGTTAGGGAAACCAGATCCACCATCGTAGCTTCAATCTGTTCCAC
1 TTCAATCTTTTTAATTGCAATGTCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCAC
* *
36843856 TACACCACC-AGGAAAGTAAGATTTGCCGTTATGGC
66 TGCACCACCAAGG-AAGTAAGATTTGCCGTTGTGGC
*
36843891 TTCAATCTTTTTAATTGCAATGTCGGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCAC
1 TTCAATCTTTTTAATTGCAATGTCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCAC
* ** ** *
36843956 TGTACTGCCAAGGAAGTAAGATTCACCGTTGCGGC
66 TGCACCACCAAGGAAGTAAGATTTGCCGTTGTGGC
36843991 TTCAATCT
1 TTCAATCT
36843999 ATTCCACTGT
Statistics
Matches: 178, Mismatches: 26, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
99 2 0.01
100 170 0.96
101 6 0.03
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (100 bp):
TTCAATCTTTTTAATTGCAATGTCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCAC
TGCACCACCAAGGAAGTAAGATTTGCCGTTGTGGC
Found at i:36846316 original size:16 final size:16
Alignment explanation
Indices: 36846291--36846324 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
36846281 TTCTATAATG
36846291 AAATGCCATGCAATCA
1 AAATGCCATGCAATCA
*
36846307 AAATGTCATGCAATCA
1 AAATGCCATGCAATCA
36846323 AA
1 AA
36846325 GTAAAACACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.21, G:0.12, T:0.21
Consensus pattern (16 bp):
AAATGCCATGCAATCA
Found at i:36847790 original size:8 final size:7
Alignment explanation
Indices: 36847760--36847829 Score: 50
Period size: 7 Copynumber: 8.9 Consensus size: 7
36847750 TAAAGAACGC
36847760 ATAAACAT
1 ATAAA-AT
* *
36847768 ATAGACT
1 ATAAAAT
36847775 ATAAAAT
1 ATAAAAT
36847782 ATGAAAAT
1 AT-AAAAT
36847790 ATAAATATT
1 ATAAA-A-T
36847799 ATAAAAAT
1 AT-AAAAT
36847807 ATAAATGTAT
1 ATAAA---AT
36847817 ATAAAAT
1 ATAAAAT
36847824 ATAAAA
1 ATAAAA
36847830 ACTATGAAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 15
0.73 0.06 0.21
Matches are distributed among these distances:
7 22 0.43
8 15 0.29
9 4 0.08
10 10 0.20
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.30
Consensus pattern (7 bp):
ATAAAAT
Found at i:36847807 original size:17 final size:17
Alignment explanation
Indices: 36847780--36847828 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 17
36847770 AGACTATAAA
*
36847780 ATATGAAAATATAAATAT
1 ATAT-AAAATATAAATGT
36847798 -TATAAAAATATAAATGT
1 ATAT-AAAATATAAATGT
36847815 ATATAAAATATAAA
1 ATATAAAATATAAA
36847829 AACTATGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 25 0.89
18 3 0.11
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (17 bp):
ATATAAAATATAAATGT
Found at i:36847808 original size:25 final size:23
Alignment explanation
Indices: 36847777--36847839 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 23
36847767 TATAGACTAT
36847777 AAAATATGAAAATATAAATATTATA
1 AAAATATGAAAATATAAA-A-TATA
36847802 AAAATAT-AAATGTATATAAAATATA
1 AAAATATGAAA---ATATAAAATATA
36847827 AAAACTATGAAAA
1 AAAA-TATGAAAA
36847840 GAAAAGAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
24 4 0.12
25 15 0.45
26 4 0.12
27 10 0.30
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.29
Consensus pattern (23 bp):
AAAATATGAAAATATAAAATATA
Found at i:36847830 original size:8 final size:8
Alignment explanation
Indices: 36847777--36847830 Score: 54
Period size: 8 Copynumber: 6.5 Consensus size: 8
36847767 TATAGACTAT
*
36847777 AAAATATG
1 AAAATATA
36847785 AAAATATA
1 AAAATATA
*
36847793 AATATTATA
1 AA-AATATA
36847802 AAAATATA
1 AAAATATA
**
36847810 AATGTATA
1 AAAATATA
36847818 TAAAATATA
1 -AAAATATA
36847827 AAAA
1 AAAA
36847831 CTATGAAAAG
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
8 24 0.65
9 13 0.35
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.30
Consensus pattern (8 bp):
AAAATATA
Found at i:36847839 original size:17 final size:16
Alignment explanation
Indices: 36847777--36847839 Score: 56
Period size: 17 Copynumber: 3.8 Consensus size: 16
36847767 TATAGACTAT
36847777 AAAATATGAAAATATA
1 AAAATATGAAAATATA
* *
36847793 AATATTATAAAAATATA
1 AA-AATATGAAAATATA
*
36847810 AATGTATAT-AAAATATA
1 AA--AATATGAAAATATA
36847827 AAAACTATGAAAA
1 AAAA-TATGAAAA
36847840 GAAAAGAAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
15 1 0.03
16 5 0.14
17 28 0.76
18 3 0.08
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.29
Consensus pattern (16 bp):
AAAATATGAAAATATA
Found at i:36847845 original size:5 final size:5
Alignment explanation
Indices: 36847835--36847864 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
36847825 TAAAAACTAT
36847835 GAAAA GAAAA GAAAA GAAAA GAAAA GAAAA
1 GAAAA GAAAA GAAAA GAAAA GAAAA GAAAA
36847865 TATATACATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
GAAAA
Found at i:36848651 original size:21 final size:22
Alignment explanation
Indices: 36848627--36848669 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
36848617 TTAAAACATG
36848627 AAAACAAGA-AAACAA-ATAAAA
1 AAAACAAGATAAA-AACATAAAA
*
36848648 AAAAGAAGATAAAAACATAAAA
1 AAAACAAGATAAAAACATAAAA
36848670 TCACCTTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.79, C:0.07, G:0.07, T:0.07
Consensus pattern (22 bp):
AAAACAAGATAAAAACATAAAA
Found at i:36855623 original size:14 final size:14
Alignment explanation
Indices: 36855591--36855623 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
36855581 ATGTTTCACT
36855591 AAAAATGATTTTCG
1 AAAAATGATTTTCG
*
36855605 GAAAATGATTTTCG
1 AAAAATGATTTTCG
36855619 AAAAA
1 AAAAA
36855624 GCTAATATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.48, C:0.06, G:0.15, T:0.30
Consensus pattern (14 bp):
AAAAATGATTTTCG
Found at i:36859015 original size:24 final size:24
Alignment explanation
Indices: 36858988--36859035 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
36858978 AAGATTTAGT
36858988 ATTTATTAGTATAATATATTTGAC
1 ATTTATTAGTATAATATATTTGAC
* *
36859012 ATTTATTAGTATAGTTTATTTGAC
1 ATTTATTAGTATAATATATTTGAC
36859036 TTACTAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.04, G:0.10, T:0.52
Consensus pattern (24 bp):
ATTTATTAGTATAATATATTTGAC
Found at i:36860455 original size:25 final size:25
Alignment explanation
Indices: 36860427--36860534 Score: 126
Period size: 25 Copynumber: 4.3 Consensus size: 25
36860417 GTATGCTCTC
* * * *
36860427 ACGAGTTGCGAATTGGGAAACTCAT
1 ACGAGCTGCAAATCGGGAAGCTCAT
*
36860452 ACGAGCTGCAAATCGAGAAGCTCAT
1 ACGAGCTGCAAATCGGGAAGCTCAT
*
36860477 ACGAGCTGTAAATCGGGAAGCTCAT
1 ACGAGCTGCAAATCGGGAAGCTCAT
* * *
36860502 ACGATCTGTAAATCGAGAAGCTCAT
1 ACGAGCTGCAAATCGGGAAGCTCAT
*
36860527 ATGAGCTG
1 ACGAGCTG
36860535 TGGTATGTCT
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 72 1.00
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.21
Consensus pattern (25 bp):
ACGAGCTGCAAATCGGGAAGCTCAT
Found at i:36860481 original size:50 final size:50
Alignment explanation
Indices: 36860427--36860534 Score: 144
Period size: 50 Copynumber: 2.2 Consensus size: 50
36860417 GTATGCTCTC
* * *
36860427 ACGAGTTGCGAATTGGGAAACTCATACGAGCTGCAAATCGAGAAGCTCAT
1 ACGAGCTGCAAATCGGGAAACTCATACGAGCTGCAAATCGAGAAGCTCAT
* * * *
36860477 ACGAGCTGTAAATCGGGAAGCTCATACGATCTGTAAATCGAGAAGCTCAT
1 ACGAGCTGCAAATCGGGAAACTCATACGAGCTGCAAATCGAGAAGCTCAT
*
36860527 ATGAGCTG
1 ACGAGCTG
36860535 TGGTATGTCT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.21
Consensus pattern (50 bp):
ACGAGCTGCAAATCGGGAAACTCATACGAGCTGCAAATCGAGAAGCTCAT
Found at i:36860535 original size:25 final size:25
Alignment explanation
Indices: 36860447--36860535 Score: 142
Period size: 25 Copynumber: 3.6 Consensus size: 25
36860437 AATTGGGAAA
*
36860447 CTCATACGAGCTGCAAATCGAGAAG
1 CTCATACGAGCTGTAAATCGAGAAG
*
36860472 CTCATACGAGCTGTAAATCGGGAAG
1 CTCATACGAGCTGTAAATCGAGAAG
*
36860497 CTCATACGATCTGTAAATCGAGAAG
1 CTCATACGAGCTGTAAATCGAGAAG
*
36860522 CTCATATGAGCTGT
1 CTCATACGAGCTGT
36860536 GGTATGTCTG
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 58 1.00
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (25 bp):
CTCATACGAGCTGTAAATCGAGAAG
Found at i:36862576 original size:19 final size:19
Alignment explanation
Indices: 36862552--36862594 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
36862542 AATTTTAATT
36862552 TTAATCAAATAAAATT-AAA
1 TTAATCAAAT-AAATTAAAA
*
36862571 TTAATCAAATTAATTAAAA
1 TTAATCAAATAAATTAAAA
36862590 TTAAT
1 TTAAT
36862595 ATGATGTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (19 bp):
TTAATCAAATAAATTAAAA
Found at i:36863139 original size:5 final size:6
Alignment explanation
Indices: 36863066--36863185 Score: 57
Period size: 5 Copynumber: 21.3 Consensus size: 6
36863056 TGACTATCTA
* * * * *
36863066 AATATT AAAATT AAT-TT AATATT TATCTT ATATATA AATATT -CTATT
1 AATATT AATATT AATATT AATATT AATATT A-ATATT AATATT AATATT
*
36863113 AAT-TT AATA-- AGAT-TT AATATT AA-ATT AATA-T AATATT --TATCA
1 AATATT AATATT A-ATATT AATATT AATATT AATATT AATATT AATAT-T
*
36863155 AGATATA AATATT -ATATT AAT-TT AATATT AA
1 A-ATATT AATATT AATATT AATATT AATATT AA
36863186 GGTGATTAAG
Statistics
Matches: 86, Mismatches: 12, Indels: 32
0.66 0.09 0.25
Matches are distributed among these distances:
4 4 0.05
5 38 0.44
6 35 0.41
7 6 0.07
8 3 0.03
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (6 bp):
AATATT
Found at i:36863176 original size:60 final size:62
Alignment explanation
Indices: 36863066--36863181 Score: 182
Period size: 60 Copynumber: 1.9 Consensus size: 62
36863056 TGACTATCTA
* * * *
36863066 AATATTAAAATTAATTTAATATTTATCTTATATATAAATATTCTATTAATTTAATAAGATTT
1 AATATTAAAATTAATATAATATTTATCTAAGATATAAATATTATATTAATTTAATAAGATTT
36863128 AATATT-AAATTAATATAATATTTATC-AAGATATAAATATTATATTAATTTAATA
1 AATATTAAAATTAATATAATATTTATCTAAGATATAAATATTATATTAATTTAATA
36863182 TTAAGGTGAT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
60 25 0.50
61 19 0.38
62 6 0.12
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (62 bp):
AATATTAAAATTAATATAATATTTATCTAAGATATAAATATTATATTAATTTAATAAGATTT
Found at i:36866441 original size:27 final size:27
Alignment explanation
Indices: 36866399--36866586 Score: 290
Period size: 27 Copynumber: 7.0 Consensus size: 27
36866389 TACATAGTAT
36866399 TGGCGCCTATCTGGGAGGCGCCAATGG
1 TGGCGCCTATCTGGGAGGCGCCAATGG
*
36866426 TGGTGCCTATCTGGGAGGCGCCAATGG
1 TGGCGCCTATCTGGGAGGCGCCAATGG
* *
36866453 TGGTGCC-ATTCTGAGAGGCGCCAATGG
1 TGGCGCCTA-TCTGGGAGGCGCCAATGG
36866480 TGGCGCCTATCTGGGAGGCGCCAATGG
1 TGGCGCCTATCTGGGAGGCGCCAATGG
36866507 TGGCGCCTATCTGGGAGGCGCCAATGG
1 TGGCGCCTATCTGGGAGGCGCCAATGG
36866534 TGGCGCCTATCTGGGAGGCGCCAATGG
1 TGGCGCCTATCTGGGAGGCGCCAATGG
* **
36866561 TGGTGCC-ATACTGAAAGGCGCCAATG
1 TGGCGCCTAT-CTGGGAGGCGCCAATG
36866587 CTGTGATTTT
Statistics
Matches: 151, Mismatches: 7, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
26 3 0.02
27 147 0.97
28 1 0.01
ACGTcount: A:0.17, C:0.24, G:0.39, T:0.20
Consensus pattern (27 bp):
TGGCGCCTATCTGGGAGGCGCCAATGG
Found at i:36866486 original size:12 final size:12
Alignment explanation
Indices: 36866469--36866568 Score: 56
Period size: 12 Copynumber: 7.6 Consensus size: 12
36866459 CATTCTGAGA
36866469 GGCGCCAATGGT
1 GGCGCCAATGGT
* *
36866481 GGCGCCTATCTGGGA
1 GGCGCC-A-AT-GGT
36866496 GGCGCCAATGGT
1 GGCGCCAATGGT
* *
36866508 GGCGCCTATCTGGGA
1 GGCGCC-A-AT-GGT
36866523 GGCGCCAATGGT
1 GGCGCCAATGGT
* *
36866535 GGCGCCTATCTGGGA
1 GGCGCC-A-AT-GGT
36866550 GGCGCCAATGGT
1 GGCGCCAATGGT
*
36866562 GGTGCCA
1 GGCGCCA
36866569 TACTGAAAGG
Statistics
Matches: 66, Mismatches: 13, Indels: 18
0.68 0.13 0.19
Matches are distributed among these distances:
12 30 0.45
13 6 0.09
14 6 0.09
15 24 0.36
ACGTcount: A:0.15, C:0.26, G:0.41, T:0.18
Consensus pattern (12 bp):
GGCGCCAATGGT
Found at i:36866690 original size:18 final size:20
Alignment explanation
Indices: 36866648--36866694 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 20
36866638 GAAACGGAAG
36866648 AAAGAAGAAGGAAGGAAGCA
1 AAAGAAGAAGGAAGGAAGCA
* *
36866668 GAAGAA-AA-GAAGGAAGGA
1 AAAGAAGAAGGAAGGAAGCA
36866686 AAAGAAGAA
1 AAAGAAGAA
36866695 AAAAAATTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 14 0.61
19 4 0.17
20 5 0.22
ACGTcount: A:0.64, C:0.02, G:0.34, T:0.00
Consensus pattern (20 bp):
AAAGAAGAAGGAAGGAAGCA
Found at i:36866697 original size:22 final size:23
Alignment explanation
Indices: 36866644--36866697 Score: 76
Period size: 22 Copynumber: 2.4 Consensus size: 23
36866634 TACAGAAACG
*
36866644 GAAGAAAGAAGAAGGAAGGAAGCA
1 GAAGAAA-AAGAAGGAAGGAAGAA
36866668 GAAG-AAAAGAAGGAAGGAA-AA
1 GAAGAAAAAGAAGGAAGGAAGAA
36866689 GAAGAAAAA
1 GAAGAAAAA
36866698 AAATTAGGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 5 0.18
22 17 0.61
23 2 0.07
24 4 0.14
ACGTcount: A:0.65, C:0.02, G:0.33, T:0.00
Consensus pattern (23 bp):
GAAGAAAAAGAAGGAAGGAAGAA
Found at i:36868872 original size:88 final size:88
Alignment explanation
Indices: 36868723--36868922 Score: 391
Period size: 88 Copynumber: 2.3 Consensus size: 88
36868713 GCGTACGAGC
*
36868723 TAGAATAATATATTATAAAAAAGTTTATCGGAACCGACGGTGACTTCCCGATACCCGGATTAGTA
1 TAGAATAATATATTATAAAAAAGTTTATCGGAACCGACAGTGACTTCCCGATACCCGGATTAGTA
36868788 CTCCAACTACAAAAACAAATTGT
66 CTCCAACTACAAAAACAAATTGT
36868811 TAGAATAATATATTATAAAAAAGTTTATCGGAACCGACAGTGACTTCCCGATACCCGGATTAGTA
1 TAGAATAATATATTATAAAAAAGTTTATCGGAACCGACAGTGACTTCCCGATACCCGGATTAGTA
36868876 CTCCAACTACAAAAACAAATTGT
66 CTCCAACTACAAAAACAAATTGT
36868899 TAGAATAATATATTATAAAAAAGT
1 TAGAATAATATATTATAAAAAAGT
36868923 CAACTAATTA
Statistics
Matches: 111, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 111 1.00
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.27
Consensus pattern (88 bp):
TAGAATAATATATTATAAAAAAGTTTATCGGAACCGACAGTGACTTCCCGATACCCGGATTAGTA
CTCCAACTACAAAAACAAATTGT
Found at i:36869917 original size:16 final size:15
Alignment explanation
Indices: 36869886--36869927 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
36869876 ACAAAATCAA
*
36869886 ATAAAATTTAATTAT
1 ATAAAAGTTAATTAT
36869901 ATAAAAGTTACATTAT
1 ATAAAAGTTA-ATTAT
*
36869917 ATAAAAATTAA
1 ATAAAAGTTAA
36869928 ATGAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.38
Consensus pattern (15 bp):
ATAAAAGTTAATTAT
Found at i:36870007 original size:38 final size:38
Alignment explanation
Indices: 36869964--36870045 Score: 155
Period size: 38 Copynumber: 2.2 Consensus size: 38
36869954 AAAAAGTCAG
36869964 TTATAATTAAACTTTTAATAAAATGATTTTTAATTTTT
1 TTATAATTAAACTTTTAATAAAATGATTTTTAATTTTT
*
36870002 TTATAATTAAACTTTTAATGAAATGATTTTTAATTTTT
1 TTATAATTAAACTTTTAATAAAATGATTTTTAATTTTT
36870040 TTATAA
1 TTATAA
36870046 ACTTTATATG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (38 bp):
TTATAATTAAACTTTTAATAAAATGATTTTTAATTTTT
Found at i:36870155 original size:60 final size:60
Alignment explanation
Indices: 36870079--36870200 Score: 165
Period size: 60 Copynumber: 2.0 Consensus size: 60
36870069 ATACTAAACT
* * * * * *
36870079 AAACACAACAACTTATAGCTTAATCCTAAATTACTAATAAATTAAATT-TTAAATAATTAC
1 AAACACAAAAACTTATAACATAATCCCAAATTACTAACAAATT-AATTATAAAATAATTAC
*
36870139 AAACACAAAAATTTATAACATAATCCCAAATTACTAACAAATTAATTATAAAATAATTAC
1 AAACACAAAAACTTATAACATAATCCCAAATTACTAACAAATTAATTATAAAATAATTAC
36870199 AA
1 AA
36870201 TATTCATACA
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
59 4 0.07
60 50 0.93
ACGTcount: A:0.54, C:0.15, G:0.01, T:0.30
Consensus pattern (60 bp):
AAACACAAAAACTTATAACATAATCCCAAATTACTAACAAATTAATTATAAAATAATTAC
Found at i:36870293 original size:30 final size:27
Alignment explanation
Indices: 36870241--36870336 Score: 130
Period size: 27 Copynumber: 3.7 Consensus size: 27
36870231 ATATCCCCAC
36870241 ATTACAATATTCATACAAAATTATAAT
1 ATTACAATATTCATACAAAATTATAAT
36870268 ATTACAATATTCATAC-AAA--A-AA-
1 ATTACAATATTCATACAAAATTATAAT
* * *
36870290 ATTATAATATTCATACAAAATTACAAA
1 ATTACAATATTCATACAAAATTATAAT
36870317 ATTACAATATTCATACAAAA
1 ATTACAATATTCATACAAAA
36870337 AATTACTAAT
Statistics
Matches: 62, Mismatches: 2, Indels: 10
0.84 0.03 0.14
Matches are distributed among these distances:
22 15 0.24
23 5 0.08
24 1 0.02
25 1 0.02
26 5 0.08
27 35 0.56
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.32
Consensus pattern (27 bp):
ATTACAATATTCATACAAAATTATAAT
Found at i:36870308 original size:49 final size:48
Alignment explanation
Indices: 36870188--36870346 Score: 171
Period size: 49 Copynumber: 3.3 Consensus size: 48
36870178 AATTAATTAT
* *
36870188 AAAATAATTACAATATTCATACAAAAAATTACAATATTACAATA-T-AT-C
1 AAAA-AATTATAATATTCATAC--AAAATTACAAAATTACAATATTCATAC
*** * * * *
36870236 CCCACATTACAATATTCATACAAAATTATAATATTACAATATTCATAC
1 AAAAAATTATAATATTCATACAAAATTACAAAATTACAATATTCATAC
36870284 AAAAAAATTATAATATTCATACAAAATTACAAAATTACAATATTCATAC
1 -AAAAAATTATAATATTCATACAAAATTACAAAATTACAATATTCATAC
36870333 AAAAAATTACTAAT
1 AAAAAATTA-TAAT
36870347 CCAAAACTAT
Statistics
Matches: 94, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
45 19 0.20
46 1 0.01
47 18 0.19
48 11 0.12
49 45 0.48
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.31
Consensus pattern (48 bp):
AAAAAATTATAATATTCATACAAAATTACAAAATTACAATATTCATAC
Found at i:36870335 original size:19 final size:20
Alignment explanation
Indices: 36870268--36870315 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 20
36870258 AAATTATAAT
36870268 ATTACAATATTCATACAAAAAA
1 ATTACAATATTCATAC--AAAA
*
36870290 ATTATAATATTCATAC-AAA
1 ATTACAATATTCATACAAAA
36870309 ATTACAA
1 ATTACAA
36870316 AATTACAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 9 0.38
22 15 0.62
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (20 bp):
ATTACAATATTCATACAAAA
Found at i:36870405 original size:19 final size:19
Alignment explanation
Indices: 36870380--36870461 Score: 85
Period size: 19 Copynumber: 4.2 Consensus size: 19
36870370 ATTATAAAAT
36870380 AATTACAATATTCATACAA
1 AATTACAATATTCATACAA
* *
36870399 CATTACAATATTCATAAAA
1 AATTACAATATTCATACAA
* *
36870418 AAATATAATATTCATACAAAA
1 AATTACAATATTCATAC--AA
*
36870439 AAGTTAAAATATTC-TACAA
1 AA-TTACAATATTCATACAA
36870458 AATT
1 AATT
36870462 CTAATCTAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
18 2 0.04
19 34 0.65
21 7 0.13
22 9 0.17
ACGTcount: A:0.55, C:0.12, G:0.01, T:0.32
Consensus pattern (19 bp):
AATTACAATATTCATACAA
Found at i:36870440 original size:21 final size:22
Alignment explanation
Indices: 36870405--36870459 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 22
36870395 ACAACATTAC
*
36870405 AATATTCAT--AAAAAA-ATAT
1 AATATTCATACAAAAAAGATAA
*
36870424 AATATTCATACAAAAAAGTTAA
1 AATATTCATACAAAAAAGATAA
36870446 AATATTC-TACAAAA
1 AATATTCATACAAAA
36870460 TTCTAATCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 9 0.29
21 13 0.42
22 9 0.29
ACGTcount: A:0.60, C:0.09, G:0.02, T:0.29
Consensus pattern (22 bp):
AATATTCATACAAAAAAGATAA
Found at i:36870812 original size:27 final size:27
Alignment explanation
Indices: 36870782--36870843 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
36870772 AGGGCACCAC
*
36870782 TGGCGCCTCTCCATGAGGCTCCTTCAT
1 TGGCGCCTCTCCATGAGGCTCCTCCAT
36870809 TGGCGCCTCTCCATGAGGCTCCTCCAT
1 TGGCGCCTCTCCATGAGGCTCCTCCAT
36870836 TGGCGCCT
1 TGGCGCCT
36870844 ACTAGACAGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.10, C:0.39, G:0.24, T:0.27
Consensus pattern (27 bp):
TGGCGCCTCTCCATGAGGCTCCTCCAT
Found at i:36871054 original size:26 final size:27
Alignment explanation
Indices: 36870995--36871056 Score: 72
Period size: 29 Copynumber: 2.3 Consensus size: 27
36870985 AAAAAAGTAA
*
36870995 CCTATTTTAGTAAATTTTTTTTCTGACAT
1 CCTATTTCAGTAAATTTTTTTTCT-A-AT
* *
36871024 ACTATTTCAGTAATTTTTTTTTCT-AT
1 CCTATTTCAGTAAATTTTTTTTCTAAT
36871050 CCTATTT
1 CCTATTT
36871057 AGGTAAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 8 0.28
29 21 0.72
ACGTcount: A:0.23, C:0.15, G:0.05, T:0.58
Consensus pattern (27 bp):
CCTATTTCAGTAAATTTTTTTTCTAAT
Found at i:36872648 original size:23 final size:21
Alignment explanation
Indices: 36872610--36872656 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 21
36872600 ATTTTTAAAA
* *
36872610 TTTTTAAAATAAAAAATTATT
1 TTTTTAAAAAAAAAAATCATT
36872631 TTTTTAAAAAAATTAAAATCATT
1 TTTTTAAAAAAA--AAAATCATT
36872654 TTT
1 TTT
36872657 AAAAAGTGCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 11 0.50
23 11 0.50
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
TTTTTAAAAAAAAAAATCATT
Found at i:36879611 original size:136 final size:136
Alignment explanation
Indices: 36879367--36879638 Score: 508
Period size: 136 Copynumber: 2.0 Consensus size: 136
36879357 ATGCGGTCCT
*
36879367 ATGTGGCAGTACAGGAGCTGTCAAAGTGCTCTTGAGCTGTGGTGCAAATGTAGAATGCCCAGTTA
1 ATGTGGCAGTACAGAAGCTGTCAAAGTGCTCTTGAGCTGTGGTGCAAATGTAGAATGCCCAGTTA
*
36879432 AAACCATGAAAACTGAGTTCCGACCAATACACATGGCAACTCGTCTTGGCTTGTCGGCAACCCTT
66 AAACCATGAAAACTGAGTTCCGACCAATACACATGGCAACTCGTCTTGGCTTGTCGGAAACCCTT
36879497 CAATCA
131 CAATCA
36879503 ATGTGGCAGTACAGAAGCTGTCAAAGTGCTCTTGAGCTGTGGTGCAAATGTAGAATGCCCAGTTA
1 ATGTGGCAGTACAGAAGCTGTCAAAGTGCTCTTGAGCTGTGGTGCAAATGTAGAATGCCCAGTTA
* *
36879568 AAACCATGAAATCTGAGTTCCGGCCAATACACATGGCAACTCGTCTTGGCTTGTCGGAAACCCTT
66 AAACCATGAAAACTGAGTTCCGACCAATACACATGGCAACTCGTCTTGGCTTGTCGGAAACCCTT
36879633 CAATCA
131 CAATCA
36879639 CTCATTGATT
Statistics
Matches: 132, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
136 132 1.00
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.25
Consensus pattern (136 bp):
ATGTGGCAGTACAGAAGCTGTCAAAGTGCTCTTGAGCTGTGGTGCAAATGTAGAATGCCCAGTTA
AAACCATGAAAACTGAGTTCCGACCAATACACATGGCAACTCGTCTTGGCTTGTCGGAAACCCTT
CAATCA
Found at i:36882350 original size:16 final size:17
Alignment explanation
Indices: 36882319--36882351 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
36882309 TTAGTTGAAA
*
36882319 TCAATCAATTTTAATCT
1 TCAATCAATTTCAATCT
36882336 TCAAT-AATTTCAATCT
1 TCAATCAATTTCAATCT
36882352 CTTGCCTTCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.45
Consensus pattern (17 bp):
TCAATCAATTTCAATCT
Found at i:36889669 original size:51 final size:48
Alignment explanation
Indices: 36889606--36889708 Score: 134
Period size: 49 Copynumber: 2.1 Consensus size: 48
36889596 GAACTATACT
* * *
36889606 TATTTTATTTTATTTTAGAATAAGGTTTTTCAACCTTATTACACTCCATC
1 TATTTGATTTTA--TTAGAATAAGGTGTTTCAACCTTACTACACTCCATC
* *
36889656 TATTTGATATTTATTAGAATATGGTGTTTCAACCTTACTACACTCCTTC
1 TATTTGAT-TTTATTAGAATAAGGTGTTTCAACCTTACTACACTCCATC
36889705 TATT
1 TATT
36889709 AGAATATGGT
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
49 36 0.77
50 7 0.15
51 4 0.09
ACGTcount: A:0.27, C:0.17, G:0.08, T:0.49
Consensus pattern (48 bp):
TATTTGATTTTATTAGAATAAGGTGTTTCAACCTTACTACACTCCATC
Found at i:36892348 original size:77 final size:77
Alignment explanation
Indices: 36892167--36892359 Score: 205
Period size: 77 Copynumber: 2.5 Consensus size: 77
36892157 TTATGCCATT
* * *
36892167 TGGATGGAAGAATCAACCATCTAGATGAGTTCCAATATGTTTTGGTTTATTAAATAAATGTTTCT
1 TGGATGGAAGAATCAACCATCTAGATGGGTTCCAATATATTTTGGTTTAGTAAATAAATGTTTCT
* *
36892232 TGTAATGTCGTC
66 TGTAATCTCATC
* * * * * *
36892244 TAGATGGCAGAATCAGCTACCTAGATGGGTTCCAATTTATTTTGG-TTAGGTAAATAAAT-TTAT
1 TGGATGGAAGAATCAACCATCTAGATGGGTTCCAATATATTTTGGTTTA-GTAAATAAATGTT-T
36892307 CTTGTAATACT-ATC
64 CTTGTAAT-CTCATC
* *
36892321 TGGATGGTAGAATAAACCATCTAGATGGCG-TCCAATATA
1 TGGATGGAAGAATCAACCATCTAGATGG-GTTCCAATATA
36892360 ATTCTATTTA
Statistics
Matches: 94, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
76 5 0.05
77 87 0.93
78 2 0.02
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.36
Consensus pattern (77 bp):
TGGATGGAAGAATCAACCATCTAGATGGGTTCCAATATATTTTGGTTTAGTAAATAAATGTTTCT
TGTAATCTCATC
Found at i:36893190 original size:17 final size:17
Alignment explanation
Indices: 36893170--36893202 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
36893160 AAATATTGAG
36893170 TTAGATAAATGAAATGT
1 TTAGATAAATGAAATGT
36893187 TTAGATAAATGAAATG
1 TTAGATAAATGAAATG
36893203 GAGTTTACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.18, T:0.33
Consensus pattern (17 bp):
TTAGATAAATGAAATGT
Found at i:36899397 original size:30 final size:31
Alignment explanation
Indices: 36899358--36899417 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
36899348 GGAGGTGGGA
*
36899358 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
* *
36899389 TGGG-AGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAA
36899418 TAAAAGTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
Found at i:36899527 original size:5 final size:5
Alignment explanation
Indices: 36899517--36899541 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
36899507 TTGGGGGGTT
36899517 GGGAG GGGAG GGGAG GGGAG GGGAG
1 GGGAG GGGAG GGGAG GGGAG GGGAG
36899542 TAAAAGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.80, T:0.00
Consensus pattern (5 bp):
GGGAG
Found at i:36899654 original size:9 final size:9
Alignment explanation
Indices: 36899640--36899676 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
36899630 TATAGTTTGA
36899640 TATTCGAAT
1 TATTCGAAT
36899649 TATTCGAAT
1 TATTCGAAT
* *
36899658 TATTTGAGT
1 TATTCGAAT
36899667 TATTCGAAT
1 TATTCGAAT
36899676 T
1 T
36899677 CGAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.49
Consensus pattern (9 bp):
TATTCGAAT
Found at i:36899746 original size:9 final size:9
Alignment explanation
Indices: 36899729--36899759 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
36899719 TTGAGTTGAT
36899729 TCGAATAAC
1 TCGAATAAC
*
36899738 TCGATTAAC
1 TCGAATAAC
36899747 TCGAATAAC
1 TCGAATAAC
36899756 TCGA
1 TCGA
36899760 CTCAAAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:36904172 original size:28 final size:26
Alignment explanation
Indices: 36904125--36904177 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
36904115 TATTAGAAAT
*
36904125 TTTTTTAATTTATTTAAAATTTATTTA
1 TTTTTTAAATTATTTAAAA-TTATTTA
36904152 TTTTTTAAATTATCATT-AAATTATTT
1 TTTTTTAAATTAT--TTAAAATTATTT
36904178 CTTATAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
27 18 0.78
28 3 0.13
29 2 0.09
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (26 bp):
TTTTTTAAATTATTTAAAATTATTTA
Found at i:36904289 original size:7 final size:7
Alignment explanation
Indices: 36904279--36904303 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
36904269 ACAAAAAGAA
36904279 AAAAAAG
1 AAAAAAG
36904286 AAAAAAG
1 AAAAAAG
36904293 AAAAAAG
1 AAAAAAG
36904300 AAAA
1 AAAA
36904304 CATGAGATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:36904347 original size:20 final size:19
Alignment explanation
Indices: 36904318--36904367 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
36904308 AGATAAGACA
* *
36904318 AAAAATATGAGGGACTACC
1 AAAAACATGAGAGACTACC
36904337 AGAAAACATGAGAGACTACC
1 A-AAAACATGAGAGACTACC
36904357 AATAAACATGA
1 AA-AAACATGA
36904368 AAAAAATACC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 2 0.07
20 25 0.93
ACGTcount: A:0.52, C:0.16, G:0.18, T:0.14
Consensus pattern (19 bp):
AAAAACATGAGAGACTACC
Found at i:36904608 original size:20 final size:20
Alignment explanation
Indices: 36904579--36904618 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
36904569 ATAAATAAAT
36904579 ATGAGAGCAAACCAAAAAAC
1 ATGAGAGCAAACCAAAAAAC
*
36904599 ATGAGCGCAAACCAAAAAAC
1 ATGAGAGCAAACCAAAAAAC
36904619 CAAAAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.57, C:0.23, G:0.15, T:0.05
Consensus pattern (20 bp):
ATGAGAGCAAACCAAAAAAC
Found at i:36904772 original size:40 final size:39
Alignment explanation
Indices: 36904728--36904956 Score: 99
Period size: 40 Copynumber: 5.6 Consensus size: 39
36904718 GGGATTATAG
*
36904728 AAAAAGATGAGAAGATACCAAAAATTGTGAGGGACTACCA
1 AAAAAGATGAGAAGATACCAAAAA-TATGAGGGACTACCA
* * * * *
36904768 AAAAACA-AAAAGAGATACCAAAACATATGACGGATTACCA
1 AAAAAGATGAGA-AGATACCAAAA-ATATGAGGGACTACCA
* * * *
36904808 GAAAACATGAG-GGCATACCAAGAAATATGAGGATAC-ACCA
1 AAAAAGATGAGAAG-ATACCAA-AAATATGAGG-GACTACCA
** * * * * *
36904848 AAAAATCT-AAAAGCTTTTACCAAAAAAACATGAAGGATTACCA
1 AAAAAGATGAGAAG---ATACC--AAAAATATGAGGGACTACCA
* * *
36904891 AAAAAGATGAGAAAATACCATAAATTGTGAGGGACTACCAA
1 AAAAAGATGAGAAGATACCA-AAAATATGAGGGACTACC-A
*
36904932 ATAAAAGATG-GCAAAATACCAAAAA
1 A-AAAAGATGAG-AAGATACCAAAAA
36904957 AGGTGATCTA
Statistics
Matches: 137, Mismatches: 35, Indels: 33
0.67 0.17 0.16
Matches are distributed among these distances:
39 5 0.04
40 72 0.53
41 15 0.11
42 22 0.16
43 18 0.13
44 5 0.04
ACGTcount: A:0.53, C:0.15, G:0.17, T:0.15
Consensus pattern (39 bp):
AAAAAGATGAGAAGATACCAAAAATATGAGGGACTACCA
Found at i:36904895 original size:20 final size:20
Alignment explanation
Indices: 36904763--36904900 Score: 59
Period size: 20 Copynumber: 6.8 Consensus size: 20
36904753 TGTGAGGGAC
**
36904763 TACCAAAAAACAAAAAGAGA-
1 TACCAAAAAACATGAAG-GAT
* * *
36904783 TACCAAAACATATGACGGAT
1 TACCAAAAAACATGAAGGAT
* *
36904803 TACCAGAAAACATGAGGGCA-
1 TACCAAAAAACATGAAGG-AT
* *
36904823 TACCAAGAAATATG-AGGAT
1 TACCAAAAAACATGAAGGAT
* * **
36904842 ACACCAAAAAATC-TAAAAGCTTT
1 -TACCAAAAAA-CAT-GAAG-GAT
36904865 TACCAAAAAAACATGAAGGAT
1 TACC-AAAAAACATGAAGGAT
*
36904886 TACCAAAAAAGATGA
1 TACCAAAAAACATGA
36904901 GAAAATACCA
Statistics
Matches: 84, Mismatches: 24, Indels: 20
0.66 0.19 0.16
Matches are distributed among these distances:
18 1 0.01
19 4 0.05
20 56 0.67
21 6 0.07
22 9 0.11
23 8 0.10
ACGTcount: A:0.54, C:0.17, G:0.14, T:0.15
Consensus pattern (20 bp):
TACCAAAAAACATGAAGGAT
Found at i:36904909 original size:20 final size:20
Alignment explanation
Indices: 36904886--36904958 Score: 51
Period size: 20 Copynumber: 3.5 Consensus size: 20
36904876 CATGAAGGAT
36904886 TACCAAAAAAGATGAGAAAA
1 TACCAAAAAAGATGAGAAAA
** ** *
36904906 TACCATAAATTG-TGAGGGAC
1 TACCA-AAAAAGATGAGAAAA
36904926 TACCAAATAAAAGATG-GCAAAA
1 TACC-AA-AAAAGATGAG-AAAA
36904948 TACCAAAAAAG
1 TACCAAAAAAG
36904959 GTGATCTATT
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
20 20 0.53
21 11 0.29
22 7 0.18
ACGTcount: A:0.55, C:0.14, G:0.16, T:0.15
Consensus pattern (20 bp):
TACCAAAAAAGATGAGAAAA
Found at i:36905077 original size:20 final size:20
Alignment explanation
Indices: 36905054--36905134 Score: 53
Period size: 20 Copynumber: 4.1 Consensus size: 20
36905044 GGCATTATTG
36905054 AAAAAGATGAGAAGATACCA
1 AAAAAGATGAGAAGATACCA
* *
36905074 AAAATTG-TGAG-GGACTACCA
1 AAAA-AGATGAGAAGA-TACCA
* * *
36905094 AAAAACATTAAGAA-ATACCG
1 AAAAAGA-TGAGAAGATACCA
*
36905114 AAAAAGATGAGATG-TACCA
1 AAAAAGATGAGAAGATACCA
36905133 AA
1 AA
36905135 TTTTGTTCGT
Statistics
Matches: 44, Mismatches: 11, Indels: 13
0.65 0.16 0.19
Matches are distributed among these distances:
19 12 0.27
20 27 0.61
21 5 0.11
ACGTcount: A:0.54, C:0.12, G:0.19, T:0.15
Consensus pattern (20 bp):
AAAAAGATGAGAAGATACCA
Found at i:36905650 original size:19 final size:19
Alignment explanation
Indices: 36905553--36905652 Score: 56
Period size: 20 Copynumber: 5.0 Consensus size: 19
36905543 ATATTATTAG
*
36905553 AAAACATGAGAGGATACCAA
1 AAAACATGAGATG-TACCAA
* * **
36905573 AAAATAAGAGAGTGTACTGA
1 AAAACATGAGA-TGTACCAA
** * *
36905593 AAAACATGTCAGGATACAAAA
1 AAAACATGAGATG-TAC-CAA
* *
36905614 AAAATATGAGGATATACCAA
1 AAAACATGA-GATGTACCAA
36905634 AAAACATGAGATGTACCAA
1 AAAACATGAGATGTACCAA
36905653 TTTTGGTTCA
Statistics
Matches: 56, Mismatches: 20, Indels: 9
0.66 0.24 0.11
Matches are distributed among these distances:
19 10 0.18
20 33 0.59
21 12 0.21
22 1 0.02
ACGTcount: A:0.54, C:0.12, G:0.18, T:0.16
Consensus pattern (19 bp):
AAAACATGAGATGTACCAA
Found at i:36906526 original size:9 final size:9
Alignment explanation
Indices: 36906509--36906538 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
36906499 TTTTTTCTCC
*
36906509 AAAACCCTA
1 AAAATCCTA
36906518 AAAATCCTA
1 AAAATCCTA
36906527 AAAATCCTA
1 AAAATCCTA
36906536 AAA
1 AAA
36906539 CCTTAAACCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.60, C:0.23, G:0.00, T:0.17
Consensus pattern (9 bp):
AAAATCCTA
Done.