Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 123 of 144
Found at i:38335760 original size:88 final size:86
Alignment explanation
Indices: 38335049--38335934 Score: 394
Period size: 88 Copynumber: 10.1 Consensus size: 86
38335039 GTGAAGATAA
* * * * * *
38335049 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAACCTTGCCTCCCTAGG-T
1 CAGATCTTGCCTTCCTGCA--GACAGTGAAGCAGATCGAAGTCCCCAGCCTTGTCTCCCT-GGAC
* * * *
38335113 TGTAGTGGAGCAGGTTAAAAATAG
63 AGCAGTGGAGTAGGTTAAAATTAG
* ** ** * * * * * *
38335137 CAGATCTTGCCTTCCTGCGTCGACAGCAAAGCAGATAAAAGACACCAACCTTGCCTCCCT-AAGT
1 CAGATCTTGCCTTCCTGC--AGACAGTGAAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGGA-C
* * * *
38335201 TGCAGCGGAGCAGGTTTAAAAATAG
63 AGCAGTGGAGTAGG-TTAAAATTAG
* * * * * * ** *
38335226 CAGATCTTGCCTTCCTCCACCGATAGCGAAGCAGATCGAAGACACCAACCTTACCTCCCTAGG-T
1 CAGATCTTGCCTTCCTGCA--GACAGTGAAGCAGATCGAAGTCCCCAGCCTTGTCTCCCT-GGAC
* * *
38335290 TGCAGTGGAGCAGGTTAAAAATAG
63 AGCAGTGGAGTAGGTTAAAATTAG
* * ** * * * * ***
38335314 CAGATCTTGCTTTCCTGCGCCGACAGTGAAATAGATCGAAGACACCAACCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCT--GCAGACAGTGAAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGGACA
* ** * **
38335379 GTAGCAGAGCAGGTTAAAAAAAG
64 GCAGTGGAGTAGGTTAAAATTAG
* ** * * * * * * * **
38335402 TAGATCTTGCCTTCCTGC-GCCAACAACGAAACAAATCAAAGACACCAACCTTGCCTCCCTGGGT
1 CAGATCTTGCCTTCCTGCAG---ACAGTGAAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGGAC
* *
38335466 TGCAGTGGAGCAGGTTAAAA-TAG
63 AGCAGTGGAGTAGGTTAAAATTAG
* * * * ** * ** ***
38335489 CATATTTTGCCTTCCTACGCCGACAGCGAAGCAGATCGAAAACACCAGCCTTACCTCCCTGGGTT
1 CAGATCTTGCCTTCCT--GCAGACAGTGAAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGGACA
* * * *
38335554 GCAGCGGAGCAGGTTAAAAATAC
64 GCAGTGGAGTAGGTTAAAATTAG
* * * * * * **
38335577 CAGATCTTGCCTTCCTG-AGTCGACAGCGAAGCAGATCAAAGACACCAACCTTGCCTCCCTGGGT
1 CAGATCTTGCCTTCCTGCA---GACAGTGAAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGGAC
* * * *
38335641 TGCAGCGGAATAGGTTAAAAATAG
63 AGCAGTGGAGTAGGTTAAAATTAG
* *
38335665 TAGATCTTGCCTTCCTGCACTGACAGTGGAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGGACA
1 CAGATCTTGCCTTCCTGCA--GACAGTGAAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGGACA
38335730 GCAGTGGAGTAGGTTGAAAATTA-
64 GCAGTGGAGTAGGTT-AAAATTAG
* ** * * *
38335753 CAAATCTTATCTACCTAAGCAG-TAGTGAAGCAGATCAAAGTCCCCAGCCTTGTCTCCCT-GAGC
1 CAGATCTTGCCTTCCT--GCAGACAGTGAAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGGA-C
38335816 AGCAGTGGAGTAGGTTGAAAATTA-
63 AGCAGTGGAGTAGGTT-AAAATTAG
* ** * * *
38335840 CAGTTCTTATCTCCCTAAGCAG-TAGTGGAGCAGATCGAAGTCCCCAGCCTTGTCTCCCT-GAGC
1 CAGATCTTGCCTTCCT--GCAGACAGTGAAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGGA-C
* *
38335903 AGTAGTAGAGTAGGTTGAAAATTA-
63 AGCAGTGGAGTAGGTT-AAAATTAG
38335927 CAGATCTT
1 CAGATCTT
38335935 ATCTCCCTAA
Statistics
Matches: 678, Mismatches: 93, Indels: 55
0.82 0.11 0.07
Matches are distributed among these distances:
85 1 0.00
86 5 0.01
87 217 0.32
88 366 0.54
89 84 0.12
90 5 0.01
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (86 bp):
CAGATCTTGCCTTCCTGCAGACAGTGAAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGGACAGC
AGTGGAGTAGGTTAAAATTAG
Found at i:38335785 original size:263 final size:262
Alignment explanation
Indices: 38335049--38335788 Score: 887
Period size: 263 Copynumber: 2.8 Consensus size: 262
38335039 GTGAAGATAA
*
38335049 CAGATCTTGCCTTCCTGCA-CCGACAGCGAAGCAGATCGAAGACACCAACCTTGCCTCCCTAGGT
1 CAGATCTTGCCTTCCTG-AGCCGACAGCGAAGCAGATCGAAGACACCAACCTTGCCTCCCTGGGT
* * * * *
38335113 TGTAGTGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCGTCGACAGCAAAGCAGATAAAAG
65 TGTAGCGGAGCAGGTTAAAAATAGTAGATCTTGCCTTCCTGCCT-GACAGCGAAGCAGATCAAAG
* * *
38335178 ACACCAACCTTGCCTCCCT-AAGTTGCAGCGGAGCAGGTTTAAAAATAGCAGATCTTGCCTTCCT
129 ACACCAACCTTGCCTCCCTGGA-TTGCAGTGGAGCAGG-TT-AAAATAGCAAATCTTGCCTTCCT
* * *
38335242 CCA-CCGATAGCGAAGCAGATCGAAGACACCAACCTTACCTCCCTAGGTTGCAGTGGAGCAGGTT
191 -AAGCCGATAGCGAAGCAGATCGAAAACACCAACCTTACCTCCCTAGGTTGCAGCGGAGCAGGTT
*
38335306 AAAAATAG
255 AAAAATAC
* * * **
38335314 CAGATCTTGCTTTCCTGCGCCGACAGTGAAATAGATCGAAGACACCAACCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGAGCCGACAGCGAAGCAGATCGAAGACACCAACCTTGCCTCCCTGGGTT
* * ** * * *
38335379 GTAGCAGAGCAGGTTAAAAAAAGTAGATCTTGCCTTCCTGCGCCAACAACGAAACAAATCAAAGA
66 GTAGCGGAGCAGGTTAAAAATAGTAGATCTTGCCTTCCTGC-CTGACAGCGAAGCAGATCAAAGA
* * * *
38335444 CACCAACCTTGCCTCCCTGGGTTGCAGTGGAGCAGGTTAAAATAGCATATTTTGCCTTCCTACGC
130 CACCAACCTTGCCTCCCTGGATTGCAGTGGAGCAGGTTAAAATAGCAAATCTTGCCTTCCTAAGC
* * *
38335509 CGACAGCGAAGCAGATCGAAAACACCAGCCTTACCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAA
195 CGATAGCGAAGCAGATCGAAAACACCAACCTTACCTCCCTAGGTTGCAGCGGAGCAGGTTAAAAA
38335574 TAC
260 TAC
* *
38335577 CAGATCTTGCCTTCCTGAGTCGACAGCGAAGCAGATCAAAGACACCAACCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGAGCCGACAGCGAAGCAGATCGAAGACACCAACCTTGCCTCCCTGGGTT
* ** * * * *
38335642 GCAGCGGAATAGGTTAAAAATAGTAGATCTTGCCTTCCTGCACTGACAGTGGAGCAGATCGAAGT
66 GTAGCGGAGCAGGTTAAAAATAGTAGATCTTGCCTTCCTGC-CTGACAGCGAAGCAGATCAAAGA
* * * ** * ** *
38335707 CCCCAGCCTTGTCTCCCTGGACAGCAGTGGAGTAGGTTGAAAATTA-CAAATCTTATCTACCTAA
130 CACCAACCTTGCCTCCCTGGATTGCAGTGGAGCAGGTT-AAAA-TAGCAAATCTTGCCTTCCTAA
* *
38335771 GCAG-TAGTGAAGCAGATC
193 GCCGATAGCGAAGCAGATC
38335789 AAAGTCCCCA
Statistics
Matches: 400, Mismatches: 69, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
263 235 0.59
264 21 0.05
265 144 0.36
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (262 bp):
CAGATCTTGCCTTCCTGAGCCGACAGCGAAGCAGATCGAAGACACCAACCTTGCCTCCCTGGGTT
GTAGCGGAGCAGGTTAAAAATAGTAGATCTTGCCTTCCTGCCTGACAGCGAAGCAGATCAAAGAC
ACCAACCTTGCCTCCCTGGATTGCAGTGGAGCAGGTTAAAATAGCAAATCTTGCCTTCCTAAGCC
GATAGCGAAGCAGATCGAAAACACCAACCTTACCTCCCTAGGTTGCAGCGGAGCAGGTTAAAAAT
AC
Found at i:38335805 original size:87 final size:87
Alignment explanation
Indices: 38335689--38335956 Score: 448
Period size: 87 Copynumber: 3.1 Consensus size: 87
38335679 CTGCACTGAC
38335689 AGTGGAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTG-GACAGCAGTGGAGTAGGTTGAAAATTA
1 AGTGGAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTA
* *
38335753 CAAATCTTATCTACCTAAGCAGT
65 CAGATCTTATCTCCCTAAGCAGT
* *
38335776 AGTGAAGCAGATCAAAGTCCCCAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTAC
1 AGTGGAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTAC
*
38335841 AGTTCTTATCTCCCTAAGCAGT
66 AGATCTTATCTCCCTAAGCAGT
* *
38335863 AGTGGAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGTAGTAGAGTAGGTTGAAAATTAC
1 AGTGGAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTAC
*
38335928 AGATCTTATCTCCCTAAGAAGT
66 AGATCTTATCTCCCTAAGCAGT
38335950 AGTGGAG
1 AGTGGAG
38335957 TAGGTCGAGG
Statistics
Matches: 169, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
87 168 0.99
88 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (87 bp):
AGTGGAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTAC
AGATCTTATCTCCCTAAGCAGT
Found at i:38335854 original size:44 final size:43
Alignment explanation
Indices: 38335732--38335961 Score: 185
Period size: 44 Copynumber: 5.3 Consensus size: 43
38335722 CCTGGACAGC
* *
38335732 AGTGGAGTAGGTTGAAAATTACAAATCTTATCTACCTAAGCAGT
1 AGTGGAGTAGGTTGAAAATTAC-AGTCTTATCTCCCTAAGCAGT
* * * * * ** * * * *
38335776 AGTGAAGCA-GATCAAAGTCCCCAGCCTTGTCTCCCTGAGCAGC
1 AGTGGAGTAGGTTGAAAAT-TACAGTCTTATCTCCCTAAGCAGT
38335819 AGTGGAGTAGGTTGAAAATTACAGTTCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGGTTGAAAATTACAG-TCTTATCTCCCTAAGCAGT
* * * * ** * * *
38335863 AGTGGAGCAGATCG-AAGTCCCCAGCCTTGTCTCCCTGAGCAGT
1 AGTGGAGTAGGTTGAAAAT-TACAGTCTTATCTCCCTAAGCAGT
* *
38335906 AGTAGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGAAGT
1 AGTGGAGTAGGTTGAAAATTACAG-TCTTATCTCCCTAAGCAGT
38335950 AGTGGAGTAGGT
1 AGTGGAGTAGGT
38335962 CGAGGATGGT
Statistics
Matches: 135, Mismatches: 45, Indels: 12
0.70 0.23 0.06
Matches are distributed among these distances:
43 63 0.47
44 72 0.53
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (43 bp):
AGTGGAGTAGGTTGAAAATTACAGTCTTATCTCCCTAAGCAGT
Found at i:38335904 original size:43 final size:43
Alignment explanation
Indices: 38335689--38335908 Score: 165
Period size: 43 Copynumber: 5.1 Consensus size: 43
38335679 CTGCACTGAC
*
38335689 AGTGGAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTG-GACAGC
1 AGTGGAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAG-CAGT
* * * * ** * ** * * *
38335732 AGTGGAGTAGGTTGAAAATTACAAATCTTATCTACCTAAGCAGT
1 AGTGGAGCAGATCG-AAGTCCCCAGCCTTGTCTCCCTGAGCAGT
* * *
38335776 AGTGAAGCAGATCAAAGTCCCCAGCCTTGTCTCCCTGAGCAGC
1 AGTGGAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGT
* * * * ** * * *
38335819 AGTGGAGTAGGTTGAAAAT-TACAGTTCTTATCTCCCTAAGCAGT
1 AGTGGAGCAGATCG-AAGTCCCCAG-CCTTGTCTCCCTGAGCAGT
38335863 AGTGGAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGT
1 AGTGGAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGT
38335906 AGT
1 AGT
38335909 AGAGTAGGTT
Statistics
Matches: 123, Mismatches: 49, Indels: 10
0.68 0.27 0.05
Matches are distributed among these distances:
43 64 0.52
44 58 0.47
45 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.24
Consensus pattern (43 bp):
AGTGGAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGT
Found at i:38337345 original size:11 final size:11
Alignment explanation
Indices: 38337328--38337360 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
38337318 TTTGGGGAGG
38337328 CCGACCCGACT
1 CCGACCCGACT
*
38337339 TCGACCCGAC-
1 CCGACCCGACT
38337349 CCGACCCGACT
1 CCGACCCGACT
38337360 C
1 C
38337361 GGCCTAGGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.18, C:0.55, G:0.18, T:0.09
Consensus pattern (11 bp):
CCGACCCGACT
Found at i:38337733 original size:20 final size:20
Alignment explanation
Indices: 38337705--38337746 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
38337695 TATGTAATTA
* *
38337705 TTATTTACATGTATATTTTT
1 TTATGTACATATATATTTTT
*
38337725 TTATGTACATATGTATTTTT
1 TTATGTACATATATATTTTT
38337745 TT
1 TT
38337747 TTCAAACTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.24, C:0.05, G:0.07, T:0.64
Consensus pattern (20 bp):
TTATGTACATATATATTTTT
Found at i:38337995 original size:10 final size:11
Alignment explanation
Indices: 38337975--38338009 Score: 54
Period size: 10 Copynumber: 3.2 Consensus size: 11
38337965 ATATGTATTT
38337975 TTTTATATAAA
1 TTTTATATAAA
38337986 TTTT-TATAAA
1 TTTTATATAAA
38337996 TTTATATATAAA
1 TTT-TATATAAA
38338008 TT
1 TT
38338010 CATGTGTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 9 0.41
11 5 0.23
12 8 0.36
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
TTTTATATAAA
Found at i:38338077 original size:20 final size:21
Alignment explanation
Indices: 38338052--38338095 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
38338042 GTCATGCACC
*
38338052 TTTATTCTTTATTT-TTTTTG
1 TTTATTCTTTATTTATTTATG
*
38338072 TTTATTTTTTATTTATTTATG
1 TTTATTCTTTATTTATTTATG
38338093 TTT
1 TTT
38338096 TCATTAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.14, C:0.02, G:0.05, T:0.80
Consensus pattern (21 bp):
TTTATTCTTTATTTATTTATG
Found at i:38340018 original size:28 final size:27
Alignment explanation
Indices: 38339961--38340019 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 27
38339951 AAAGCTATTT
* *
38339961 TTTTTTAAATTTATCGAAATGGGCTGA
1 TTTTTTAAATTTACCGAAATGGGCTCA
*
38339988 TTTTTTAATTATTTACCGGAATGGGC-CA
1 TTTTTTAA--ATTTACCGAAATGGGCTCA
38340016 TTTT
1 TTTT
38340020 CCCCGAAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 8 0.30
28 5 0.19
29 14 0.52
ACGTcount: A:0.25, C:0.10, G:0.17, T:0.47
Consensus pattern (27 bp):
TTTTTTAAATTTACCGAAATGGGCTCA
Found at i:38340467 original size:126 final size:125
Alignment explanation
Indices: 38340235--38340516 Score: 399
Period size: 126 Copynumber: 2.2 Consensus size: 125
38340225 TTATTTCGAG
** *
38340235 TTGACGTTTCTG-GTCAAATAGTATAAAATCGCTTCTGCCAGGATGCTATCAGAGAAGAAATTGT
1 TTGACGTTTCTGAG-CAAATAGTATAAAATCGCTGATACCAGGATGCTATCAGAGAAGAAATTGT
* * * *
38340299 GAAATCGTGCCCTTGTGGACGCCATTTCGACACAGTTGGTCATGTAAGAAATAATTATTTT
65 GAAATCGCGCCCTCGTGGACGCAATTTCGACACAGTTAGTCATGTAAGAAATAATTATTTT
38340360 TTGACGTTTTCTGAGCAAATAGTATAAAATCGCTGATACCAGGATGCTAT-ATGAGAAGAAATTG
1 TTGACG-TTTCTGAGCAAATAGTATAAAATCGCTGATACCAGGATGCTATCA-GAGAAGAAATTG
* *
38340424 TGAAATTGCGCCCTCGTGGACGCAATTTCG-CTACAGTTAGTCATGTAGGAAATAATTATTTT
64 TGAAATCGCGCCCTCGTGGACGCAATTTCGAC-ACAGTTAGTCATGTAAGAAATAATTATTTT
* * *
38340486 TTGACATTTCTGAGCAAATAGTGTCAAATCG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCG
38340517 TGCCCTCTTG
Statistics
Matches: 141, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
125 31 0.22
126 109 0.77
127 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (125 bp):
TTGACGTTTCTGAGCAAATAGTATAAAATCGCTGATACCAGGATGCTATCAGAGAAGAAATTGTG
AAATCGCGCCCTCGTGGACGCAATTTCGACACAGTTAGTCATGTAAGAAATAATTATTTT
Found at i:38344183 original size:25 final size:25
Alignment explanation
Indices: 38344115--38344184 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
38344105 AAATTAGGGT
38344115 TTTTATTACATCAAATAGAACTTCTA
1 TTTTATTACATCAAATA-AACTTCTA
* *
38344141 TTTTATTATATTAAATAAACTTCTA
1 TTTTATTACATCAAATAAACTTCTA
*
38344166 TTTTATTACATCAGATAAA
1 TTTTATTACATCAAATAAA
38344185 AAAATTAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
25 24 0.62
26 15 0.38
ACGTcount: A:0.40, C:0.11, G:0.03, T:0.46
Consensus pattern (25 bp):
TTTTATTACATCAAATAAACTTCTA
Found at i:38345499 original size:20 final size:20
Alignment explanation
Indices: 38345461--38345500 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
38345451 TTTATTCTTA
*
38345461 CAAAATGTACATAACAATTT
1 CAAAATGTACATAAAAATTT
38345481 CAAAATGTA-ATATAAAATTT
1 CAAAATGTACATA-AAAATTT
38345501 ACCTCGTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.53, C:0.10, G:0.05, T:0.33
Consensus pattern (20 bp):
CAAAATGTACATAAAAATTT
Found at i:38346265 original size:14 final size:15
Alignment explanation
Indices: 38346248--38346281 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
38346238 AATATTTATC
38346248 TAAAAATA-CATAAA
1 TAAAAATATCATAAA
*
38346262 TAAAAATATCTTAAA
1 TAAAAATATCATAAA
38346277 TAAAA
1 TAAAA
38346282 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAATATCATAAA
Found at i:38346430 original size:28 final size:28
Alignment explanation
Indices: 38346379--38346434 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
38346369 TTGAAAATAT
*
38346379 TAAAAATTTTAAAATTATTTTTAAAAAA
1 TAAAAATTTTAAAATTATTCTTAAAAAA
*
38346407 TAAAAATATTTCAAATT-TTCTTAAAAAA
1 TAAAAAT-TTTAAAATTATTCTTAAAAAA
38346435 ATGAAATTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 17 0.68
29 8 0.32
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (28 bp):
TAAAAATTTTAAAATTATTCTTAAAAAA
Found at i:38346435 original size:29 final size:28
Alignment explanation
Indices: 38346379--38346436 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
38346369 TTGAAAATAT
*
38346379 TAAAAATTTTAAAATTATTTTTAAAAAA
1 TAAAAATTTTAAAATTATTTTAAAAAAA
*
38346407 TAAAAATATTTCAAATT-TTCTTAAAAAAA
1 TAAAAAT-TTTAAAATTATT-TTAAAAAAA
38346436 T
1 T
38346437 GAAATTGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 9 0.35
29 17 0.65
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (28 bp):
TAAAAATTTTAAAATTATTTTAAAAAAA
Found at i:38346495 original size:22 final size:21
Alignment explanation
Indices: 38346470--38346520 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 21
38346460 TAATATGGAG
*
38346470 TTGAGAGATTTTTTGAAGGAAA
1 TTGAGAGA-TTTTGGAAGGAAA
*
38346492 TTGAGAAGATTTTGGAAGGAAT
1 TTGAG-AGATTTTGGAAGGAAA
38346514 TTGAGAG
1 TTGAGAG
38346521 TTTAAGAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 2 0.08
22 21 0.81
23 3 0.12
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.33
Consensus pattern (21 bp):
TTGAGAGATTTTGGAAGGAAA
Found at i:38346546 original size:52 final size:52
Alignment explanation
Indices: 38346473--38346571 Score: 148
Period size: 52 Copynumber: 1.9 Consensus size: 52
38346463 TATGGAGTTG
* *
38346473 AGAGATTTTTTGAAGGAAATTGAGA-AGATT-TTGGAAGGAATTTGAGAGTTTA
1 AGAGAATTTTGGAAGGAAATTGAGAGA-ATTCTT-GAAGGAATTTGAGAGTTTA
38346525 AGAGAATTTTGGAAGGAAATTGAGAGAATTCTTGAAGGAATTTGAGA
1 AGAGAATTTTGGAAGGAAATTGAGAGAATTCTTGAAGGAATTTGAGA
38346572 TAATTTTTGA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
52 40 0.93
53 3 0.07
ACGTcount: A:0.38, C:0.01, G:0.29, T:0.31
Consensus pattern (52 bp):
AGAGAATTTTGGAAGGAAATTGAGAGAATTCTTGAAGGAATTTGAGAGTTTA
Found at i:38346594 original size:22 final size:22
Alignment explanation
Indices: 38346529--38346595 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
38346519 AGTTTAAGAG
* *
38346529 AATTTTGGAAGGAAATTGAGAG
1 AATTTTTGAAGGAAATTGAGAT
* *
38346551 AATTCTTGAAGGAATTTGAGAT
1 AATTTTTGAAGGAAATTGAGAT
*
38346573 AATTTTTGAATGAAATTGAGAT
1 AATTTTTGAAGGAAATTGAGAT
38346595 A
1 A
38346596 GGATTTGTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.40, C:0.01, G:0.24, T:0.34
Consensus pattern (22 bp):
AATTTTTGAAGGAAATTGAGAT
Found at i:38346842 original size:29 final size:27
Alignment explanation
Indices: 38346808--38346861 Score: 90
Period size: 29 Copynumber: 1.9 Consensus size: 27
38346798 CGGGGAAAAT
38346808 GGCCCATTTCGGTAAATAATTAAAAAACC
1 GGCCCATTTCGGTAAAT--TTAAAAAACC
38346837 GGCCCATTTCGGTAAATTTAAAAAA
1 GGCCCATTTCGGTAAATTTAAAAAA
38346862 AAAAAGGGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 8 0.32
29 17 0.68
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.26
Consensus pattern (27 bp):
GGCCCATTTCGGTAAATTTAAAAAACC
Found at i:38349198 original size:25 final size:25
Alignment explanation
Indices: 38349164--38349215 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
38349154 CTTTTCACTA
38349164 TTACAAAACCAACAATCACAGTTAC
1 TTACAAAACCAACAATCACAGTTAC
38349189 TTACAAAACCAACAATCACAGTTAC
1 TTACAAAACCAACAATCACAGTTAC
38349214 TT
1 TT
38349216 CATCTCTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.46, C:0.27, G:0.04, T:0.23
Consensus pattern (25 bp):
TTACAAAACCAACAATCACAGTTAC
Found at i:38353064 original size:63 final size:63
Alignment explanation
Indices: 38352995--38353114 Score: 156
Period size: 63 Copynumber: 1.9 Consensus size: 63
38352985 AAAATAAGAA
38352995 AAATATTAAAACT-TA-AAATCAAT-ATAAACTTATAAAAAATTAAAAAAAGTAATAAAAACTTA
1 AAATATTAAAA-TATATAAA-CAATAATAAA-TTATAAAAAATTAAAAAAAGTAATAAAAACTTA
38353057 T
63 T
* * * *
38353058 AAATATTAAAATATATAAACTATAATAAATTATAAAAATTTTACAAAAGTAATAAAA
1 AAATATTAAAATATATAAACAATAATAAATTATAAAAAATTAAAAAAAGTAATAAAA
38353115 CATGTTTAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
62 1 0.02
63 41 0.82
64 8 0.16
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.30
Consensus pattern (63 bp):
AAATATTAAAATATATAAACAATAATAAATTATAAAAAATTAAAAAAAGTAATAAAAACTTAT
Found at i:38353283 original size:29 final size:29
Alignment explanation
Indices: 38353226--38353291 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
38353216 TATTAAATAT
*
38353226 TAAAAAATCATAAAAACTTGTAAAGATTA
1 TAAAAAATCATAAAAACTTGTAAAAATTA
*
38353255 TAAAAAATC-TAATAAA-TTTTAATAAATTA
1 TAAAAAATCATAA-AAACTTGTAA-AAATTA
*
38353284 TTAAAAAT
1 TAAAAAAT
38353292 ATATAATTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
28 8 0.25
29 24 0.75
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (29 bp):
TAAAAAATCATAAAAACTTGTAAAAATTA
Found at i:38353315 original size:28 final size:25
Alignment explanation
Indices: 38353273--38353325 Score: 63
Period size: 28 Copynumber: 2.0 Consensus size: 25
38353263 CTAATAAATT
38353273 TTAATAAATTATTAAAA-ATATATAA
1 TTAATAAATTATTAAAATAT-TATAA
38353298 TTAATAAGATATATTTAAAATATTATAA
1 TTAATAA-AT-TA-TTAAAATATTATAA
38353326 AAACTTATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
25 7 0.29
26 2 0.08
27 2 0.08
28 11 0.46
29 2 0.08
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (25 bp):
TTAATAAATTATTAAAATATTATAA
Found at i:38353333 original size:10 final size:9
Alignment explanation
Indices: 38353024--38353401 Score: 103
Period size: 10 Copynumber: 39.6 Consensus size: 9
38353014 CAATATAAAC
38353024 TTATAAAAAA
1 TTAT-AAAAA
*
38353034 TTAAAAAAA
1 TTATAAAAA
*
38353043 GTAATAAAAA
1 -TTATAAAAA
38353053 CTTAT--AAA
1 -TTATAAAAA
*
38353061 -TATTAAAA
1 TTATAAAAA
*
38353069 -TATATAAA
1 TTATAAAAA
*
38353077 CTATAATAAA
1 TTATAA-AAA
38353087 TTATAAAAA
1 TTATAAAAA
*
38353096 TTTTACAAAA
1 TTATA-AAAA
*
38353106 GTAATAAAACA
1 -TTATAAAA-A
*
38353117 TGTTTAAAATA
1 T-TATAAAA-A
*
38353128 TT-TAAAATT
1 TTATAAAA-A
38353137 TTATTAAAAA
1 TTA-TAAAAA
*
38353147 CATATAAAAA
1 -TTATAAAAA
* *
38353157 TTCTTTAAAAC
1 -T-TATAAAAA
*
38353168 CTATAAAAA
1 TTATAAAAA
** *
38353177 CCAGAAAAA
1 TTATAAAAA
*
38353186 TATAAAAAAA
1 T-TATAAAAA
* *
38353196 ATATTATAAA
1 TTA-TAAAAA
* *
38353206 TAATATAAA
1 TTATAAAAA
*
38353215 TTATTAAATA
1 TTA-TAAAAA
38353225 TTA-AAAAA
1 TTATAAAAA
*
38353233 TCATAAAAA
1 TTATAAAAA
* *
38353242 CTTGTAAAGA
1 -TTATAAAAA
38353252 TTATAAAAA
1 TTATAAAAA
* *
38353261 ATCTAATAAA
1 TTATAA-AAA
*
38353271 TTTTAATAAA
1 TTATAA-AAA
38353281 TTATTAAAAA
1 TTA-TAAAAA
*
38353291 -TAT-ATAA
1 TTATAAAAA
38353298 TTAATAAGATATA
1 TT-ATAA-A-A-A
38353311 TT-TAAAATA
1 TTATAAAA-A
38353320 TTATAAAAA
1 TTATAAAAA
38353329 CTTATAAAAA
1 -TTATAAAAA
38353339 TTCATAAATAA
1 TT-ATAAA-AA
38353350 TTATAAATAA
1 TTATAAA-AA
*
38353360 -TATAAATA
1 TTATAAAAA
*
38353368 TTCTAATAAA
1 TTATAA-AAA
38353378 TTATTAAAATA
1 TTA-TAAAA-A
38353389 TTA-AAAAA
1 TTATAAAAA
38353397 TTATA
1 TTATA
38353402 TAGAAATAGT
Statistics
Matches: 277, Mismatches: 56, Indels: 71
0.69 0.14 0.18
Matches are distributed among these distances:
6 3 0.01
7 3 0.01
8 25 0.09
9 90 0.32
10 111 0.40
11 41 0.15
12 1 0.00
13 3 0.01
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (9 bp):
TTATAAAAA
Found at i:38354021 original size:29 final size:28
Alignment explanation
Indices: 38353989--38354053 Score: 94
Period size: 29 Copynumber: 2.3 Consensus size: 28
38353979 TTTATGATTC
*
38353989 TTTTTATATTTTTTAATATTTTATATCAA
1 TTTTTATATTTTTTAAAATTTT-TATCAA
* *
38354018 TTTTAATATTTTTTAAAATTTTTATGAA
1 TTTTTATATTTTTTAAAATTTTTATCAA
38354046 TTTTTATA
1 TTTTTATA
38354054 AGTTGTTAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 12 0.38
29 20 0.62
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (28 bp):
TTTTTATATTTTTTAAAATTTTTATCAA
Found at i:38354040 original size:19 final size:20
Alignment explanation
Indices: 38353998--38354041 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
38353988 CTTTTTATAT
*
38353998 TTTTTAATATTTTATATCAA
1 TTTTTAATATTTTATATAAA
*
38354018 -TTTTAATATTTTTTA-AAA
1 TTTTTAATATTTTATATAAA
38354036 TTTTTA
1 TTTTTA
38354042 TGAATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 2 0.10
19 19 0.90
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTTTAATATTTTATATAAA
Found at i:38354176 original size:19 final size:17
Alignment explanation
Indices: 38354106--38354176 Score: 72
Period size: 18 Copynumber: 3.9 Consensus size: 17
38354096 TTTAAATATG
38354106 TTTTTATTAATTTTATAAA
1 TTTTTA-TAA-TTTATAAA
*
38354125 TTTTTATAATTTATTAGA
1 TTTTTATAATTTA-TAAA
38354143 TTTATTAT-ATTTATAATA
1 TTT-TTATAATTTATAA-A
38354161 TTTTTATAAGTTTATA
1 TTTTTATAA-TTTATA
38354177 TCAAATTTAA
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
17 10 0.22
18 19 0.42
19 16 0.36
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
TTTTTATAATTTATAAA
Found at i:38354190 original size:37 final size:34
Alignment explanation
Indices: 38354112--38354201 Score: 96
Period size: 37 Copynumber: 2.6 Consensus size: 34
38354102 TATGTTTTTA
*
38354112 TTAAT-TTTATAA-ATTTTTATAATTTATTAGAT
1 TTAATATTTATAATATTTTTATAATTTATTAAAT
38354144 TTATTATATTTATAATATTTTTATAAGTTTATATCAAAT
1 TTA--ATATTTATAATATTTTTATAA-TTTAT-T-AAAT
38354183 TTAATATTT-TAAATATTTT
1 TTAATATTTAT-AATATTTT
38354202 ATTTTTTAAT
Statistics
Matches: 49, Mismatches: 1, Indels: 11
0.80 0.02 0.18
Matches are distributed among these distances:
32 3 0.06
34 2 0.04
35 7 0.14
36 11 0.22
37 19 0.39
38 1 0.02
39 6 0.12
ACGTcount: A:0.38, C:0.01, G:0.02, T:0.59
Consensus pattern (34 bp):
TTAATATTTATAATATTTTTATAATTTATTAAAT
Found at i:38354202 original size:36 final size:33
Alignment explanation
Indices: 38354112--38354203 Score: 89
Period size: 36 Copynumber: 2.6 Consensus size: 33
38354102 TATGTTTTTA
*
38354112 TTAAT-TTTATAAAT-TTTTATAATTTATTAGAT
1 TTAATATTT-TAAATATTTTATAATTTATTAAAT
*
38354144 TTATTATATTTATAATATTTTTATAAGTTTATATCAAAT
1 TTAATAT-TTTA-AATA-TTTTATAA-TTTAT-T-AAAT
38354183 TTAATATTTTAAATATTTTAT
1 TTAATATTTTAAATATTTTAT
38354204 TTTTTAATAT
Statistics
Matches: 49, Mismatches: 3, Indels: 12
0.77 0.05 0.19
Matches are distributed among these distances:
32 4 0.08
33 3 0.06
34 5 0.10
36 14 0.29
37 9 0.18
38 5 0.10
39 9 0.18
ACGTcount: A:0.38, C:0.01, G:0.02, T:0.59
Consensus pattern (33 bp):
TTAATATTTTAAATATTTTATAATTTATTAAAT
Found at i:38354216 original size:9 final size:9
Alignment explanation
Indices: 38354182--38354247 Score: 59
Period size: 9 Copynumber: 7.4 Consensus size: 9
38354172 TTATATCAAA
38354182 TTTAATATT
1 TTTAATATT
*
38354191 TTAAATA-T
1 TTTAATATT
38354199 TTT-AT-TT
1 TTTAATATT
38354206 TTTAATATTTT
1 TTTAATA--TT
38354217 TTTAATATT
1 TTTAATATT
*
38354226 TTT-CTAATT
1 TTTAAT-ATT
38354235 TTTAATATT
1 TTTAATATT
38354244 TTTA
1 TTTA
38354248 TAGAAAAAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
7 6 0.13
8 6 0.13
9 24 0.52
10 1 0.02
11 9 0.20
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTAATATT
Found at i:38354219 original size:11 final size:11
Alignment explanation
Indices: 38354203--38354237 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
38354193 AAATATTTTA
38354203 TTTTTTAATAT
1 TTTTTTAATAT
38354214 TTTTTTAATAT
1 TTTTTTAATAT
*
38354225 TTTTCTAAT-T
1 TTTTTTAATAT
38354235 TTT
1 TTT
38354238 AATATTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 4 0.17
11 19 0.83
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTTTTAATAT
Found at i:38354812 original size:20 final size:20
Alignment explanation
Indices: 38354762--38354818 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
38354752 ATATTTTGGC
38354762 ATATCAAAATTTCTAAT-CG
1 ATATCAAAATTTCTAATGCG
** *
38354781 ATCCCAAAATTTTTAATGCG
1 ATATCAAAATTTCTAATGCG
*
38354801 ATATCAATATTTCTAATG
1 ATATCAAAATTTCTAATG
38354819 AAAATCGTTA
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.39, C:0.16, G:0.07, T:0.39
Consensus pattern (20 bp):
ATATCAAAATTTCTAATGCG
Found at i:38363214 original size:18 final size:17
Alignment explanation
Indices: 38363181--38363219 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
38363171 TTGTATAAAT
38363181 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
38363199 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
38363216 TGTG
1 TGTG
38363220 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:38363472 original size:23 final size:23
Alignment explanation
Indices: 38363445--38363542 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
38363435 AGTGTTATTG
38363445 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
38363468 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
38363491 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
38363513 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
38363536 ATCAGTG
1 ATCAGTG
38363543 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:38363511 original size:45 final size:45
Alignment explanation
Indices: 38363447--38363535 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
38363437 TGTTATTGAT
* *
38363447 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
38363492 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
38363536 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:38364840 original size:56 final size:57
Alignment explanation
Indices: 38364725--38364840 Score: 148
Period size: 56 Copynumber: 2.1 Consensus size: 57
38364715 TAACGACTGG
** **
38364725 ATTGCCATGGTATGCTGATATTGTTAACTTTCTAGCTATGGTATTTTTGGCTATGAC
1 ATTGCCATGGTATGCTGATATTGTTAACTTTCTAGCTATGGTATTGCTACCTATGAC
*
38364782 ATTGCCATGGTATG-TGATATTGTTAACTTTCTAGCTAGTGG-GTTGCTACCATAT-AC
1 ATTGCCATGGTATGCTGATATTGTTAACTTTCTAGCTA-TGGTATTGCTACC-TATGAC
38364838 ATT
1 ATT
38364841 CAATCATCAA
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
56 32 0.62
57 20 0.38
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (57 bp):
ATTGCCATGGTATGCTGATATTGTTAACTTTCTAGCTATGGTATTGCTACCTATGAC
Found at i:38371051 original size:16 final size:16
Alignment explanation
Indices: 38371027--38371065 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
38371017 CAATTGATTA
* *
38371027 GACAATATTTTGCTAT
1 GACATTATTTTGATAT
38371043 GACATTATTTTGATAT
1 GACATTATTTTGATAT
38371059 GAGCATT
1 GA-CATT
38371066 TCATCTGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.44
Consensus pattern (16 bp):
GACATTATTTTGATAT
Found at i:38376982 original size:23 final size:24
Alignment explanation
Indices: 38376931--38376984 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
38376921 GACAAATTTT
*
38376931 AAAAAAATTCATAGTTGAGTGACA
1 AAAAAAATCCATAGTTGAGTGACA
* * *
38376955 AAAAAAATCCATATTTGGGTGACT
1 AAAAAAATCCATAGTTGAGTGACA
38376979 AAAAAA
1 AAAAAA
38376985 GAAAACGACT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.52, C:0.09, G:0.15, T:0.24
Consensus pattern (24 bp):
AAAAAAATCCATAGTTGAGTGACA
Found at i:38378229 original size:19 final size:19
Alignment explanation
Indices: 38378205--38378252 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
38378195 AGTGTCTCTC
38378205 AAAACTCAG-ACTTGTTGAT
1 AAAACTC-GTACTTGTTGAT
*
38378224 AAAACTCGTTTCTTGTTGAT
1 AAAACTCG-TACTTGTTGAT
38378244 AAAACTCGT
1 AAAACTCGT
38378253 TTCTTAAGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 1 0.04
19 8 0.31
20 17 0.65
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (19 bp):
AAAACTCGTACTTGTTGAT
Found at i:38378240 original size:20 final size:20
Alignment explanation
Indices: 38378215--38378257 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
38378205 AAAACTCAGA
38378215 CTTGTTGATAAAACTCGTTT
1 CTTGTTGATAAAACTCGTTT
38378235 CTTGTTGATAAAACTCGTTT
1 CTTGTTGATAAAACTCGTTT
38378255 CTT
1 CTT
38378258 AAGTTTGGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.23, C:0.16, G:0.14, T:0.47
Consensus pattern (20 bp):
CTTGTTGATAAAACTCGTTT
Found at i:38379171 original size:27 final size:27
Alignment explanation
Indices: 38379141--38379200 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
38379131 CAACTCCTAG
*
38379141 GGGTATAACAATCATTTTACCCTTCAA
1 GGGTATAACAATAATTTTACCCTTCAA
** ** *
38379168 GGGTATTTCGGTAATTTTACCCTTCGA
1 GGGTATAACAATAATTTTACCCTTCAA
38379195 GGGTAT
1 GGGTAT
38379201 TTTGGTAATT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (27 bp):
GGGTATAACAATAATTTTACCCTTCAA
Found at i:38379201 original size:27 final size:27
Alignment explanation
Indices: 38379154--38379296 Score: 187
Period size: 27 Copynumber: 5.3 Consensus size: 27
38379144 TATAACAATC
* *
38379154 ATTTTACCCTTCAAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
38379181 ATTTTACCCTTCGAGGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
** *
38379208 ATTTTATTCTTCGAGGGTATTTTGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* * *
38379235 ATTTTATCTTTCGGGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
38379262 ATTTTACCCTTCGAGGGTATTTCAATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
38379289 ATTTTACC
1 ATTTTACC
38379297 ACGAATCGTA
Statistics
Matches: 103, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 103 1.00
ACGTcount: A:0.22, C:0.15, G:0.18, T:0.45
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGATA
Found at i:38379700 original size:20 final size:21
Alignment explanation
Indices: 38379656--38379701 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
38379646 TAGTAAAGCT
38379656 TAACAACCTATTTAAATAAGA
1 TAACAACCTATTTAAATAAGA
*
38379677 -AACAACCTATTTGAATAA-A
1 TAACAACCTATTTAAATAAGA
38379696 TAACAA
1 TAACAA
38379702 AATATTAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 1 0.04
20 22 0.96
ACGTcount: A:0.54, C:0.15, G:0.04, T:0.26
Consensus pattern (21 bp):
TAACAACCTATTTAAATAAGA
Found at i:38381299 original size:123 final size:123
Alignment explanation
Indices: 38381078--38381317 Score: 399
Period size: 123 Copynumber: 2.0 Consensus size: 123
38381068 CTGAATGTTG
* *
38381078 CTTTATAGTCTAGGCCTTCTCGTTGGGTGAAGCCCTTTGCAACCAAACGCGCTTTGTACCTATCA
1 CTTTATAGTCTAGGCCTTCTCGTTGGGTGAAGCCCTTTACAACCAAACGCACTTTGTACCTATCA
*
38381143 ATCGTACCATTAGGCTTATATGTAATCCAAAATAATCATTTACAACCAACCACATTTC
66 ATCGTACCATTAGGCTTATATGTAATCCAAAATAACCATTTACAACCAACCACATTTC
* * *
38381201 CTTTATAGTCTAGGCCTTCTCGTTGGGTGAAGCCTTTTACAACCAAACGTACTTTGTACCTGTCA
1 CTTTATAGTCTAGGCCTTCTCGTTGGGTGAAGCCCTTTACAACCAAACGCACTTTGTACCTATCA
* * *
38381266 ATCGTACCATTTGGCTTATATTTAATCCGAAATAACCATTTACAACCAACCA
66 ATCGTACCATTAGGCTTATATGTAATCCAAAATAACCATTTACAACCAACCA
38381318 TATTCTGAGA
Statistics
Matches: 108, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
123 108 1.00
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (123 bp):
CTTTATAGTCTAGGCCTTCTCGTTGGGTGAAGCCCTTTACAACCAAACGCACTTTGTACCTATCA
ATCGTACCATTAGGCTTATATGTAATCCAAAATAACCATTTACAACCAACCACATTTC
Found at i:38384374 original size:20 final size:20
Alignment explanation
Indices: 38384349--38384394 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
38384339 TAGTAAAGCT
*
38384349 TAACAACCTATTTAAATAAG
1 TAACAACCTATTTAAATAAA
* *
38384369 TAACAACCTCTTTGAATAAA
1 TAACAACCTATTTAAATAAA
38384389 TAACAA
1 TAACAA
38384395 AATATTAACA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.50, C:0.17, G:0.04, T:0.28
Consensus pattern (20 bp):
TAACAACCTATTTAAATAAA
Found at i:38386222 original size:31 final size:29
Alignment explanation
Indices: 38386185--38386252 Score: 75
Period size: 31 Copynumber: 2.3 Consensus size: 29
38386175 ATGTTAATAG
38386185 GTGACTAATTTGTCACTTTTCGATAATGTT-A
1 GTGACTAATTTGTCA-TTTTCGA-AA-GTTGA
* * *
38386216 GTGACTATTTTGTTATTTTTGAAAGTTGA
1 GTGACTAATTTGTCATTTTCGAAAGTTGA
38386245 GTGACTAA
1 GTGACTAA
38386253 ATTGAAGCTA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 3 0.09
29 10 0.31
30 6 0.19
31 13 0.41
ACGTcount: A:0.26, C:0.09, G:0.19, T:0.46
Consensus pattern (29 bp):
GTGACTAATTTGTCATTTTCGAAAGTTGA
Found at i:38391655 original size:50 final size:50
Alignment explanation
Indices: 38391533--38391655 Score: 144
Period size: 50 Copynumber: 2.5 Consensus size: 50
38391523 ACATTAAGAG
*
38391533 GATGAG-A-TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA
1 GATGAGAACTCCCATGTAAGACCATGTATGGGACATGGCGTTGGCACCGA
** **
38391581 GATGAGATGTCCCCCGTAAGACCATGTATGGGACATGGC-TTGGGCACCGA
1 GATGAGAACTCCCATGTAAGACCATGTATGGGACATGGCGTT-GGCACCGA
* * *
38391631 TATGAGAACTCCCATATAATACCAT
1 GATGAGAACTCCCATGTAAGACCAT
38391656 ATCTGAGATA
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
48 6 0.10
49 2 0.03
50 53 0.87
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.22
Consensus pattern (50 bp):
GATGAGAACTCCCATGTAAGACCATGTATGGGACATGGCGTTGGCACCGA
Found at i:38391952 original size:20 final size:20
Alignment explanation
Indices: 38391927--38391975 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
38391917 TGAGTTATTT
38391927 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGCAAGTAAGTAAAC
*
38391947 AAGTAAG-AGAGTAAGTAAAG
1 AAGTAAGCA-AGTAAGTAAAC
38391967 AAG-AAGCAA
1 AAGTAAGCAA
38391976 AGACCATGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.57, C:0.06, G:0.24, T:0.12
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:38398396 original size:4 final size:5
Alignment explanation
Indices: 38398350--38398420 Score: 51
Period size: 5 Copynumber: 14.4 Consensus size: 5
38398340 GTTGGTGATT
* *
38398350 TAATA TAAATA TAA-A T-ATA TAAATA TTATT TAATA T-ATA TAAT- TAATA
1 TAATA T-AATA TAATA TAATA T-AATA TAATA TAATA TAATA TAATA TAATA
**
38398398 TAATA TTTTTA TAATA TAATA TA
1 TAATA -TAATA TAATA TAATA TA
38398421 TTTAGGTCTA
Statistics
Matches: 51, Mismatches: 8, Indels: 14
0.70 0.11 0.19
Matches are distributed among these distances:
3 1 0.02
4 12 0.24
5 26 0.51
6 12 0.24
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (5 bp):
TAATA
Found at i:38398401 original size:18 final size:18
Alignment explanation
Indices: 38398357--38398421 Score: 55
Period size: 16 Copynumber: 3.7 Consensus size: 18
38398347 ATTTAATATA
38398357 AATATAA-ATATATAAATAT
1 AATATAATATATAT-AAT-T
* *
38398376 TATTTAATATATATAATT
1 AATATAATATATATAATT
* *
38398394 AATATAATAT-TTTTA-T
1 AATATAATATATATAATT
38398410 AATATAATATAT
1 AATATAATATAT
38398422 TTAGGTCTAG
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
16 11 0.29
17 4 0.11
18 9 0.24
19 8 0.21
20 6 0.16
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
AATATAATATATATAATT
Found at i:38398403 original size:16 final size:16
Alignment explanation
Indices: 38398349--38398421 Score: 50
Period size: 14 Copynumber: 4.9 Consensus size: 16
38398339 AGTTGGTGAT
38398349 TTAATATAA-ATATAA
1 TTAATATAATATATAA
* *
38398364 AT-ATATAA-ATATTA
1 TTAATATAATATATAA
*
38398378 TTTA-AT-ATATATAA
1 TTAATATAATATATAA
**
38398392 TTAATATAATAT-TTT
1 TTAATATAATATATAA
38398407 TATAATATAATATAT
1 T-TAATATAATATAT
38398422 TTAGGTCTAG
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
13 1 0.02
14 22 0.49
15 6 0.13
16 15 0.33
17 1 0.02
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TTAATATAATATATAA
Found at i:38402906 original size:13 final size:13
Alignment explanation
Indices: 38402888--38402914 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
38402878 CCACCTTAGA
38402888 AATCCAACCATAT
1 AATCCAACCATAT
38402901 AATCCAACCATAT
1 AATCCAACCATAT
38402914 A
1 A
38402915 CTTTTATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.22
Consensus pattern (13 bp):
AATCCAACCATAT
Found at i:38403795 original size:16 final size:16
Alignment explanation
Indices: 38403774--38403819 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
38403764 TTATTAAATT
38403774 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
38403790 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
38403805 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
38403820 CTATATTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:38403828 original size:107 final size:108
Alignment explanation
Indices: 38403714--38403924 Score: 388
Period size: 107 Copynumber: 2.0 Consensus size: 108
38403704 TATAGTATTA
* * *
38403714 TATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
38403779 TTTTAATTATAATATATTTAATAATAATTATG-TTAAATTATC
66 TTTTAATTATAATATATTTAATAATAATTATGTTTAAATTATC
38403821 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
38403886 TTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
66 TTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
38403925 ATGATTAAAT
Statistics
Matches: 100, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
107 94 0.94
108 6 0.06
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.49
Consensus pattern (108 bp):
TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
TTTTAATTATAATATATTTAATAATAATTATGTTTAAATTATC
Found at i:38403902 original size:16 final size:16
Alignment explanation
Indices: 38403881--38403922 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
38403871 TTATTAAATT
*
38403881 ATATATTTTAATTATA
1 ATATATTTTAATAATA
38403897 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
38403912 AT-TATGTTTAA
1 ATATAT-TTTAA
38403923 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:38403907 original size:15 final size:15
Alignment explanation
Indices: 38403872--38403913 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
38403862 TTAAAAATTT
*
38403872 TATTAAATTAT-ATA
1 TATTTAATTATAATA
38403886 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
38403900 TATTTAATAATAAT
1 TATTTAATTATAAT
38403914 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:38404148 original size:45 final size:44
Alignment explanation
Indices: 38404067--38404157 Score: 130
Period size: 45 Copynumber: 2.0 Consensus size: 44
38404057 ACCTCTATTC
*
38404067 CATTCAACCAAACATAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACATAAGATTACTATTACACCTCTATTCCATTA
* *
38404111 CATTCAACCAAACAGT-TGATTTGCTATTACACCTCTATTCCATTA
1 CATTCAACCAAACA-TAAGA-TTACTATTACACCTCTATTCCATTA
38404156 CA
1 CA
38404158 CCTCTAATCC
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
44 16 0.38
45 26 0.62
ACGTcount: A:0.34, C:0.27, G:0.05, T:0.33
Consensus pattern (44 bp):
CATTCAACCAAACATAAGATTACTATTACACCTCTATTCCATTA
Found at i:38404157 original size:16 final size:16
Alignment explanation
Indices: 38404138--38404205 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
38404128 GATTTGCTAT
* *
38404138 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
38404154 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
38404170 TACACCTCCAATCCAA
1 TACACCTCTAATCCAA
38404186 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
38404202 TACA
1 TACA
38404206 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.35, C:0.38, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:38411950 original size:43 final size:43
Alignment explanation
Indices: 38411880--38411972 Score: 116
Period size: 43 Copynumber: 2.2 Consensus size: 43
38411870 TTATGTGGGA
* * * * *
38411880 AAACGCCGCTAAAGATCATGACCTTTAG-TAGGACTTCTACCAC
1 AAACGCCGCTAAAGATAATAACCTTTAGCGACG-CTTATACCAC
*
38411923 AAACGCCGCTAAAGATAATAACTTTTAGCGACGCTTATACCAC
1 AAACGCCGCTAAAGATAATAACCTTTAGCGACGCTTATACCAC
38411966 AAACGCC
1 AAACGCC
38411973 ACTATAAAGA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
43 41 0.95
44 2 0.05
ACGTcount: A:0.35, C:0.28, G:0.15, T:0.22
Consensus pattern (43 bp):
AAACGCCGCTAAAGATAATAACCTTTAGCGACGCTTATACCAC
Found at i:38415931 original size:22 final size:23
Alignment explanation
Indices: 38415877--38415940 Score: 71
Period size: 22 Copynumber: 2.9 Consensus size: 23
38415867 GTGTGTTTGT
*
38415877 AAAGTTGGGGGTTTCAAGGGGGG
1 AAAGTTGGGGATTTCAAGGGGGG
* *
38415900 AAA-TTAGGGATTT-TAGGGGGG
1 AAAGTTGGGGATTTCAAGGGGGG
*
38415921 AAAGTTGGGGATCTC-AGGGG
1 AAAGTTGGGGATTTCAAGGGG
38415941 AAGAAATTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
21 10 0.29
22 21 0.62
23 3 0.09
ACGTcount: A:0.25, C:0.05, G:0.47, T:0.23
Consensus pattern (23 bp):
AAAGTTGGGGATTTCAAGGGGGG
Found at i:38417138 original size:90 final size:90
Alignment explanation
Indices: 38416975--38417147 Score: 240
Period size: 90 Copynumber: 1.9 Consensus size: 90
38416965 TACTAACCTC
* * * *
38416975 TAAACCTTATTTACTATATAAATTAAAAAACACTAATTAATCTAAACCCTAAACCCTAACCCGAC
1 TAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCCTAAACACTAAACCGAC
* *
38417040 CTCAAATCCTTAACCCCTTAACCCT
66 CTCAAATCCATAAACCCTTAACCCT
* * *
38417065 TAAACATTATTTAATATATAAATTAAAACACACTAATTAATCTAAACCTTAAACACTAAACTGAC
1 TAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCCTAAACACTAAACCGAC
*
38417130 ACT-GAATCCATAAACCCT
66 -CTCAAATCCATAAACCCT
38417148 AAATCCCTAA
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
90 70 0.97
91 2 0.03
ACGTcount: A:0.45, C:0.25, G:0.02, T:0.28
Consensus pattern (90 bp):
TAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCCTAAACACTAAACCGAC
CTCAAATCCATAAACCCTTAACCCT
Found at i:38417236 original size:14 final size:15
Alignment explanation
Indices: 38417219--38417251 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
38417209 CTTAAATCAG
38417219 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
38417233 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
38417248 AATC
1 AATC
38417252 TATAAACCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:38417804 original size:41 final size:41
Alignment explanation
Indices: 38417658--38417874 Score: 227
Period size: 41 Copynumber: 5.3 Consensus size: 41
38417648 AAATGTTTTT
* * *
38417658 GCGGCGCTTTTTCAAAAATGCCGCTAAAGCCCCGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCTCTGAGCATTA
* ** * * * *
38417699 GCGGCGCTTCTTGGAAAACACCACTAAAGCCCGGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCTCTGAGCATTA
* * *
38417740 GCGGCGCTTCTTGAAAAACGCCGCTAAATCTCTGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCTCTGAGCATTA
* * ** *
38417781 GCGGCGCTTTTTTAAAAATGCCGCTAAATATATGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCTCTGAGCATTA
* * *
38417822 GCGACACTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCTCTGAGCATTA
* *
38417863 GCAGCACTTTTT
1 GCGGCGCTTTTT
38417875 TTAAAAACAT
Statistics
Matches: 150, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 150 1.00
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (41 bp):
GCGGCGCTTTTTCAAAAACGCCGCTAAAGCTCTGAGCATTA
Found at i:38418492 original size:18 final size:18
Alignment explanation
Indices: 38418458--38418492 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
38418448 TCTTCTACTC
* *
38418458 CAATTGGTTCTTTTAATT
1 CAATTGGTTCATCTAATT
38418476 CAATTGGTTCATCTAAT
1 CAATTGGTTCATCTAAT
38418493 CCTCCTTTAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.14, G:0.11, T:0.49
Consensus pattern (18 bp):
CAATTGGTTCATCTAATT
Found at i:38420461 original size:114 final size:112
Alignment explanation
Indices: 38420123--38420550 Score: 378
Period size: 114 Copynumber: 3.7 Consensus size: 112
38420113 CTTTAGGGGA
* * *
38420123 TTTAGCGGCGTTTTT-GAAAATGCACCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGC
1 TTTAGCGGCGTTTTTGGAGAA-GCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAG-
* * * * * * *
38420187 A-TTCGGGGGTTTAGCGGCGTTTTTATTAAAGTGCTGCTAATACTTAGGGC
64 ATTTTGGGGATTTAGCGGCGTTTTTA--GAAGCGCCGCTAATGCTCAGGGC
* * *
38420237 TTTAGCGGCGTTTTTGAAGAAGCGCCGCAAAAAAAAACCTAAGCACAACGACACCG-TTTCTGAG
1 TTTAGCGGCGTTTTTGGAGAAGCGCCGC--AAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAG
* * * * * **
38420301 CTTTTCAGGGATTTAGCGGTGTTTTTAAGGGAGCACCGCTAATGCTCATAGC
64 ATTTT-GGGGATTTAGCGGCGTTTTT-A-GAAGCGCCGCTAATGCTCAGGGC
* * *
38420353 TTTAGCGGCGTTTTTGGAGAAGTGCCGCAAAATAACCTAAGCCCAACGACGCTGTTTTCTGAGAT
1 TTTAGCGGCGTTTTTGGAGAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGAT
* * * *
38420418 TTTGGGGATCTAGCGGCGTTTCTCTAGAAGCGCCGCTAGTGCTCGGGGA
66 TTTGGGGATTTAGCGGCGTTT-T-TAGAAGCGCCGCTAATGCTCAGGGC
* * * * * * * *
38420467 TTTAACGACGTTTTTGGGGTAGCGCCTCAAGAAAAA-CTAAGCCCAACGACGTCGTTTTCTGTGC
1 TTTAGCGGCGTTTTTGGAGAAGCGCCGCAA-AAAAACCTAAGCCCAACGACGCCGTTTTCTGAGA
* *
38420531 TTTCGAGGGATTTAGTGGCG
65 TTTTG-GGGATTTAGCGGCG
38420551 CTCTCCAAAG
Statistics
Matches: 251, Mismatches: 52, Indels: 21
0.77 0.16 0.06
Matches are distributed among these distances:
114 126 0.50
115 43 0.17
116 81 0.32
117 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (112 bp):
TTTAGCGGCGTTTTTGGAGAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGAT
TTTGGGGATTTAGCGGCGTTTTTAGAAGCGCCGCTAATGCTCAGGGC
Found at i:38422040 original size:13 final size:13
Alignment explanation
Indices: 38422006--38422044 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
38421996 TGTTATATTT
*
38422006 TTAATTTGAAAGC
1 TTAATTTGAAAAC
38422019 TTAAGTTTGAAAAC
1 TTAA-TTTGAAAAC
38422033 TTAATTTGAAAA
1 TTAATTTGAAAA
38422045 TTTGGAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.44, C:0.05, G:0.13, T:0.38
Consensus pattern (13 bp):
TTAATTTGAAAAC
Found at i:38424181 original size:21 final size:22
Alignment explanation
Indices: 38424151--38424195 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
38424141 GAGCAAATTG
38424151 TTGATTCTATTTCCTTTTTG-AT
1 TTGATTCTA-TTCCTTTTTGTAT
*
38424173 TTGA-TCTATTCTTTTTTGTAT
1 TTGATTCTATTCCTTTTTGTAT
38424194 TT
1 TT
38424196 CTCTTTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 9 0.43
21 8 0.38
22 4 0.19
ACGTcount: A:0.13, C:0.11, G:0.09, T:0.67
Consensus pattern (22 bp):
TTGATTCTATTCCTTTTTGTAT
Found at i:38427458 original size:14 final size:14
Alignment explanation
Indices: 38427439--38427466 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
38427429 GGGTCTGTAG
38427439 CACCTTCAAGTTTC
1 CACCTTCAAGTTTC
38427453 CACCTTCAAGTTTC
1 CACCTTCAAGTTTC
38427467 GTCTTTATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.36, G:0.07, T:0.36
Consensus pattern (14 bp):
CACCTTCAAGTTTC
Found at i:38428477 original size:29 final size:29
Alignment explanation
Indices: 38428445--38428517 Score: 69
Period size: 29 Copynumber: 2.5 Consensus size: 29
38428435 TCCTCAAGAC
* *
38428445 ATTTAAGTTTTCAAAAATTTAGTTTTTAA
1 ATTTAAGTTTTCAAAAATTAAGTTTTCAA
*
38428474 ATTTCCAAATTTTC--AAATTAAGTTTTCAA
1 ATTT--AAGTTTTCAAAAATTAAGTTTTCAA
* *
38428503 ACTTAAGCTTTCAAA
1 ATTTAAGTTTTCAAA
38428518 TTACAAATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
27 6 0.18
29 21 0.62
31 7 0.21
ACGTcount: A:0.38, C:0.11, G:0.05, T:0.45
Consensus pattern (29 bp):
ATTTAAGTTTTCAAAAATTAAGTTTTCAA
Found at i:38428501 original size:13 final size:13
Alignment explanation
Indices: 38428483--38428520 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
38428473 AATTTCCAAA
38428483 TTTTCAAATTAAG
1 TTTTCAAATTAAG
38428496 TTTTCAAACTTAAG
1 TTTTCAAA-TTAAG
*
38428510 CTTTCAAATTA
1 TTTTCAAATTA
38428521 CAAATATAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.37, C:0.13, G:0.05, T:0.45
Consensus pattern (13 bp):
TTTTCAAATTAAG
Found at i:38428819 original size:21 final size:21
Alignment explanation
Indices: 38428795--38428885 Score: 58
Period size: 21 Copynumber: 4.1 Consensus size: 21
38428785 GAGGTACGGA
38428795 TTTAGGGTTTGGGATTTAAGG
1 TTTAGGGTTTGGGATTTAAGG
* * * *
38428816 TTTAGGGGTTAGG-TGTTATGC
1 TTTAGGGTTTGGGAT-TTAAGG
*
38428837 TTTAGGGGTTAGGGGGATTTAAGG
1 TTTA-GGGTT--TGGGATTTAAGG
* * *
38428861 GTTAGGGATTTGGGGTTTAGGG
1 TTTAGGG-TTTGGGATTTAAGG
38428883 TTT
1 TTT
38428886 CAACGGTTAG
Statistics
Matches: 50, Mismatches: 14, Indels: 11
0.67 0.19 0.15
Matches are distributed among these distances:
20 1 0.02
21 19 0.38
22 15 0.30
23 3 0.06
24 11 0.22
25 1 0.02
ACGTcount: A:0.16, C:0.01, G:0.42, T:0.41
Consensus pattern (21 bp):
TTTAGGGTTTGGGATTTAAGG
Found at i:38429676 original size:14 final size:14
Alignment explanation
Indices: 38429659--38429692 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
38429649 AAAAAAAATA
38429659 AAATTTATTATACC
1 AAATTTATTATACC
38429673 AAATTTATTATACC
1 AAATTTATTATACC
38429687 AAATTT
1 AAATTT
38429693 CATCCGTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (14 bp):
AAATTTATTATACC
Found at i:38429946 original size:37 final size:37
Alignment explanation
Indices: 38429903--38430001 Score: 121
Period size: 37 Copynumber: 2.7 Consensus size: 37
38429893 GGTTTTGTGG
* *
38429903 TTTAGGG-TTAGGGGTTATGCTTT-ATGAGCTAGATGGA
1 TTTAGGGTTTAGGGGTTATGCTTTAAAGA-CTAG-GGGA
* *
38429940 TTTAGGGTTTAAGGGTTATGCTTTAAAGATTAGGGGA
1 TTTAGGGTTTAGGGGTTATGCTTTAAAGACTAGGGGA
*
38429977 TTTAGGGTTTAGTGGTTATGCTTTA
1 TTTAGGGTTTAGGGGTTATGCTTTA
38430002 GGGGTTAGGG
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
37 33 0.61
38 18 0.33
39 3 0.06
ACGTcount: A:0.22, C:0.04, G:0.32, T:0.41
Consensus pattern (37 bp):
TTTAGGGTTTAGGGGTTATGCTTTAAAGACTAGGGGA
Found at i:38429964 original size:21 final size:21
Alignment explanation
Indices: 38429940--38430033 Score: 67
Period size: 21 Copynumber: 4.7 Consensus size: 21
38429930 GCTAGATGGA
38429940 TTTAGGGTTTAAGGGTTATGC
1 TTTAGGGTTTAAGGGTTATGC
** * *
38429961 TTTAAAGATT-AGGG----GA
1 TTTAGGGTTTAAGGGTTATGC
38429977 TTTAGGGTTT-AGTGGTTATGC
1 TTTAGGGTTTAAG-GGTTATGC
* *
38429998 TTTAGGGGTTAGGGGTTATGC
1 TTTAGGGTTTAAGGGTTATGC
38430019 TTTAAGGG-TTAAGGG
1 TTT-AGGGTTTAAGGG
38430034 GGATTTAAGG
Statistics
Matches: 55, Mismatches: 11, Indels: 14
0.69 0.14 0.17
Matches are distributed among these distances:
16 10 0.18
17 2 0.04
20 4 0.07
21 34 0.62
22 5 0.09
ACGTcount: A:0.21, C:0.03, G:0.36, T:0.39
Consensus pattern (21 bp):
TTTAGGGTTTAAGGGTTATGC
Found at i:38431960 original size:19 final size:19
Alignment explanation
Indices: 38431936--38432034 Score: 74
Period size: 19 Copynumber: 5.7 Consensus size: 19
38431926 GAATATATAC
38431936 TTGCTGGAATATATTCTAG
1 TTGCTGGAATATATTCTAG
38431955 TTGCTGGAATATA---T-G
1 TTGCTGGAATATATTCTAG
** *
38431970 --GC-CAAATATATACT--
1 TTGCTGGAATATATTCTAG
*
38431984 T-GCTGGAATATATTCCAG
1 TTGCTGGAATATATTCTAG
* *
38432002 TTGCTAGAATATATTCCAG
1 TTGCTGGAATATATTCTAG
38432021 TTGCTGGAATATAT
1 TTGCTGGAATATAT
38432035 ACTTTACTAA
Statistics
Matches: 64, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
12 6 0.09
13 2 0.03
15 4 0.06
16 9 0.14
18 1 0.02
19 42 0.66
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.37
Consensus pattern (19 bp):
TTGCTGGAATATATTCTAG
Found at i:38432846 original size:47 final size:47
Alignment explanation
Indices: 38432701--38432884 Score: 229
Period size: 47 Copynumber: 4.0 Consensus size: 47
38432691 AAAAAACGCA
*
38432701 ATATTCTTAAGCATATATTACATTACTTACATTACTTACTGAAATAT
1 ATATTCTTAAGTATATATTACATTACTTACATTACTTACTGAAATAT
* * * * *
38432748 AT-TACATAACTCA-GT-TTACTTTACTTACATTAC-T--T-AAATAT
1 ATATTCTTAAGT-ATATATTACATTACTTACATTACTTACTGAAATAT
*
38432789 ATATTCTTAAGTATATATTACATTACTTACATTACTTACCGAAATAT
1 ATATTCTTAAGTATATATTACATTACTTACATTACTTACTGAAATAT
* *
38432836 ATATTTTTAAGTATATATTACATTACTTACATTACTTACTAAAATAT
1 ATATTCTTAAGTATATATTACATTACTTACATTACTTACTGAAATAT
38432883 AT
1 AT
38432885 TACATTACTT
Statistics
Matches: 114, Mismatches: 15, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
41 9 0.08
42 8 0.07
43 17 0.15
44 2 0.02
45 17 0.15
46 6 0.05
47 55 0.48
ACGTcount: A:0.39, C:0.14, G:0.03, T:0.44
Consensus pattern (47 bp):
ATATTCTTAAGTATATATTACATTACTTACATTACTTACTGAAATAT
Found at i:38432892 original size:18 final size:18
Alignment explanation
Indices: 38432866--38432956 Score: 105
Period size: 18 Copynumber: 4.9 Consensus size: 18
38432856 CATTACTTAC
38432866 ATTAC-TTACTAAAATAT
1 ATTACATTACTAAAATAT
*
38432883 ATTACATTACTTAAATAT
1 ATTACATTACTAAAATAT
38432901 ATTAC-TTACTAAAATTTAT
1 ATTACATTACTAAAA--TAT
*
38432920 AATTTACATTACTTAAATAT
1 -A-TTACATTACTAAAATAT
38432940 ATTACATTACTTAAAAT
1 ATTACATTAC-TAAAAT
38432957 TTATATATAT
Statistics
Matches: 63, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
17 13 0.21
18 25 0.40
19 9 0.14
20 4 0.06
21 4 0.06
22 8 0.13
ACGTcount: A:0.45, C:0.11, G:0.00, T:0.44
Consensus pattern (18 bp):
ATTACATTACTAAAATAT
Found at i:38432927 original size:39 final size:38
Alignment explanation
Indices: 38432866--38432961 Score: 144
Period size: 39 Copynumber: 2.5 Consensus size: 38
38432856 CATTACTTAC
38432866 ATTACTTACTAAAA--TAT-ATTACATTACTTAAATAT
1 ATTACTTACTAAAATTTATAATTACATTACTTAAATAT
38432901 ATTACTTACTAAAATTTATAATTTACATTACTTAAATAT
1 ATTACTTACTAAAATTTATAA-TTACATTACTTAAATAT
38432940 ATTACATTACTTAAAATTTATA
1 ATTAC-TTAC-TAAAATTTATA
38432962 TATATATTTA
Statistics
Matches: 55, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
35 14 0.25
37 3 0.05
38 1 0.02
39 22 0.40
40 4 0.07
41 11 0.20
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45
Consensus pattern (38 bp):
ATTACTTACTAAAATTTATAATTACATTACTTAAATAT
Found at i:38432943 original size:135 final size:133
Alignment explanation
Indices: 38432701--38432952 Score: 328
Period size: 135 Copynumber: 1.9 Consensus size: 133
38432691 AAAAAACGCA
* * * *
38432701 ATATTCTTAAGCATATATTACATTACTTACATTACTTACTGAAATATATTACATAACTCAGTTTA
1 ATATTCTTAAGCATATATTACATTACTTACATTACTTACTAAAATATATTACATAACTAAATATA
** *
38432766 CTTTACTTACATTACTTAAATATATATTCTTAAGTATATATTACATTACTTACATTACTTACCGA
66 C-TTACTTACAAAACTTAAATATACATTCTTAAG-ATATATTACATTACTTACATTACTTACCGA
38432831 AATAT
129 AATAT
* * *
38432836 ATATTTTTAAGTATATATTACATTACTTACATTACTTACTAAAATATATTACATTACTTAAATAT
1 ATATTCTTAAGCATATATTACATTACTTACATTACTTACTAAAATATATTACATAAC-TAAATAT
* *
38432901 A-TTACTTACTAAAATTTATAATTTACATTACTTAA-ATATATTACATTACTTA
65 ACTTACTTAC-AAAACTTA-AATATACATT-CTTAAGATATATTACATTACTTA
38432953 AAATTTATAT
Statistics
Matches: 101, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
134 8 0.08
135 75 0.74
136 13 0.13
137 5 0.05
ACGTcount: A:0.40, C:0.13, G:0.02, T:0.44
Consensus pattern (133 bp):
ATATTCTTAAGCATATATTACATTACTTACATTACTTACTAAAATATATTACATAACTAAATATA
CTTACTTACAAAACTTAAATATACATTCTTAAGATATATTACATTACTTACATTACTTACCGAAA
TAT
Found at i:38433221 original size:30 final size:30
Alignment explanation
Indices: 38433182--38433239 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
38433172 TTATAAATAA
38433182 TATACATAAAAGTG-ATATACTTACATAACT
1 TATACATAAAAGTGCATA-ACTTACATAACT
* **
38433212 TATATATAAACTTGCATAACTTACATAA
1 TATACATAAAAGTGCATAACTTACATAA
38433240 TAACATAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 21 0.88
31 3 0.12
ACGTcount: A:0.47, C:0.14, G:0.05, T:0.34
Consensus pattern (30 bp):
TATACATAAAAGTGCATAACTTACATAACT
Found at i:38433232 original size:9 final size:9
Alignment explanation
Indices: 38433200--38433604 Score: 114
Period size: 9 Copynumber: 46.3 Consensus size: 9
38433190 AAAGTGATAT
38433200 ACTTACATA
1 ACTTACATA
*
38433209 ACTTATATATAA
1 AC-T-TACAT-A
*
38433221 ACTTGCATA
1 ACTTACATA
38433230 ACTTACATA
1 ACTTACATA
*
38433239 A-TAACATAATA
1 ACTTAC---ATA
38433250 ACTTACATA
1 ACTTACATA
*
38433259 A--TACACA
1 ACTTACATA
38433266 ACTTACATA
1 ACTTACATA
*
38433275 ACTTAAAT-
1 ACTTACATA
*
38433283 A-GTACATA
1 ACTTACATA
**
38433291 ACTTTGATA
1 ACTTACATA
* *
38433300 ACTAACATT
1 ACTTACATA
*
38433309 A--TACACA
1 ACTTACATA
*
38433316 AGTTACATA
1 ACTTACATA
*
38433325 ACATACACTTA
1 ACTTACA--TA
*
38433336 A-ATACATA
1 ACTTACATA
38433344 ACTTACATA
1 ACTTACATA
*
38433353 A--TACACA
1 ACTTACATA
38433360 ACTTA-ATTAA
1 ACTTACA-T-A
*
38433370 TATTATACATA
1 -ACT-TACATA
*
38433381 ACATACATA
1 ACTTACATA
*
38433390 A--TACACA
1 ACTTACATA
*
38433397 A--TACACA
1 ACTTACATA
38433404 ACTTA-ATTAA
1 ACTTACA-T-A
*
38433414 TATTATACATA
1 -ACT-TACATA
*
38433425 ACATACATA
1 ACTTACATA
38433434 A--TACATA
1 ACTTACATA
*
38433441 A-TACACATA
1 ACT-TACATA
38433450 ACTTACAT-
1 ACTTACATA
*
38433458 A-GTACATA
1 ACTTACATA
*
38433466 ACTAACATA
1 ACTTACATA
*
38433475 A--TACACA
1 ACTTACATA
*
38433482 ACTTACGTA
1 ACTTACATA
*
38433491 ACTTAAATA
1 ACTTACATA
*
38433500 AGTTACATA
1 ACTTACATA
*
38433509 GCTTACATA
1 ACTTACATA
38433518 A--TACATA
1 ACTTACATA
38433525 ACTTACATA
1 ACTTACATA
*
38433534 ACTTATATA
1 ACTTACATA
38433543 A--TACATA
1 ACTTACATA
38433550 ACTTACATA
1 ACTTACATA
* *
38433559 ATTTACCTA
1 ACTTACATA
38433568 A--TACATA
1 ACTTACATA
* *
38433575 A-ATATATA
1 ACTTACATA
* *
38433583 TCATATCATA
1 ACTTA-CATA
38433593 ACTTACATA
1 ACTTACATA
38433602 ACT
1 ACT
38433605 CATTTATAGT
Statistics
Matches: 291, Mismatches: 61, Indels: 88
0.66 0.14 0.20
Matches are distributed among these distances:
7 69 0.24
8 17 0.06
9 153 0.53
10 20 0.07
11 18 0.06
12 12 0.04
13 2 0.01
ACGTcount: A:0.48, C:0.18, G:0.02, T:0.32
Consensus pattern (9 bp):
ACTTACATA
Found at i:38433277 original size:25 final size:25
Alignment explanation
Indices: 38433200--38433353 Score: 110
Period size: 25 Copynumber: 6.4 Consensus size: 25
38433190 AAAGTGATAT
*
38433200 ACTTACATAACTT--AT-ATATA-A
1 ACTTACATAACTTACATAATACACA
*
38433221 ACTTGCATAACTTACATAATA-AC-
1 ACTTACATAACTTACATAATACACA
38433244 A--TA-ATAACTTACATAATACACA
1 ACTTACATAACTTACATAATACACA
* * *
38433266 ACTTACATAACTTAAATAGTACATA
1 ACTTACATAACTTACATAATACACA
** * *
38433291 ACTTTGATAACTAACATTATACACA
1 ACTTACATAACTTACATAATACACA
* * *
38433316 AGTTACATAACATACACTTAAATACATA
1 ACTTACATAACTTACA--T-AATACACA
38433344 ACTTACATAA
1 ACTTACATAA
38433354 TACACAACTT
Statistics
Matches: 101, Mismatches: 20, Indels: 17
0.73 0.14 0.12
Matches are distributed among these distances:
20 15 0.15
21 15 0.15
22 1 0.01
23 4 0.04
24 5 0.05
25 45 0.45
27 1 0.01
28 15 0.15
ACGTcount: A:0.48, C:0.18, G:0.03, T:0.31
Consensus pattern (25 bp):
ACTTACATAACTTACATAATACACA
Found at i:38433357 original size:16 final size:16
Alignment explanation
Indices: 38433226--38433560 Score: 104
Period size: 16 Copynumber: 20.9 Consensus size: 16
38433216 TATAAACTTG
38433226 CATAACTTACATAATAA
1 CATAACTTACATAAT-A
38433243 CATAATAACTTACATAATA
1 C---ATAACTTACATAATA
*
38433262 CACAACTTACATAACTTA
1 CATAACTTACATAA--TA
* * *
38433280 AAT-A-GTACATAACTTT
1 CATAACTTACATAA--TA
* * *
38433296 GATAACTAACATTATA
1 CATAACTTACATAATA
* *
38433312 CACAAGTTACAT-A-A
1 CATAACTTACATAATA
38433326 CATACACTT--A-AATA
1 CATA-ACTTACATAATA
38433340 CATAACTTACATAATA
1 CATAACTTACATAATA
*
38433356 CACAACTTA-AT--TA
1 CATAACTTACATAATA
*
38433369 -AT-ATTATACATAACATA
1 CATAACT-TACAT-A-ATA
*
38433386 CATAA--TACACAATA
1 CATAACTTACATAATA
*
38433400 CACAACTTA-AT--TA
1 CATAACTTACATAATA
*
38433413 -AT-ATTATACATAACATA
1 CATAACT-TACAT-A-ATA
38433430 CATAA--TACATAATACA
1 CATAACTTACATAAT--A
*
38433446 CATAACTTACATAGTA
1 CATAACTTACATAATA
*
38433462 CATAACTAACATAATA
1 CATAACTTACATAATA
* *
38433478 CACAACTTACGTAACTTA
1 CATAACTTACATAA--TA
* * *
38433496 AATAAGTTACATAGCTTA
1 CATAACTTACATA--ATA
38433514 CATAA--TACATAACTTA
1 CATAACTTACATAA--TA
*
38433530 CATAACTTATATAATA
1 CATAACTTACATAATA
38433546 CATAACTTACATAAT
1 CATAACTTACATAAT
38433561 TTACCTAATA
Statistics
Matches: 236, Mismatches: 39, Indels: 87
0.65 0.11 0.24
Matches are distributed among these distances:
11 4 0.02
12 6 0.03
13 14 0.06
14 18 0.08
15 10 0.04
16 117 0.50
17 7 0.03
18 42 0.18
19 4 0.02
20 14 0.06
ACGTcount: A:0.49, C:0.18, G:0.02, T:0.30
Consensus pattern (16 bp):
CATAACTTACATAATA
Found at i:38433400 original size:44 final size:44
Alignment explanation
Indices: 38433337--38433447 Score: 195
Period size: 44 Copynumber: 2.5 Consensus size: 44
38433327 ATACACTTAA
38433337 ATACATAACTTACATAATACACAACTTAATTAATATTATACATAAC
1 ATACATAA--TACATAATACACAACTTAATTAATATTATACATAAC
*
38433383 ATACATAATACACAATACACAACTTAATTAATATTATACATAAC
1 ATACATAATACATAATACACAACTTAATTAATATTATACATAAC
38433427 ATACATAATACATAATACACA
1 ATACATAATACATAATACACA
38433448 TAACTTACAT
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
44 55 0.87
46 8 0.13
ACGTcount: A:0.52, C:0.18, G:0.00, T:0.30
Consensus pattern (44 bp):
ATACATAATACATAATACACAACTTAATTAATATTATACATAAC
Found at i:38433531 original size:25 final size:25
Alignment explanation
Indices: 38433338--38433575 Score: 134
Period size: 25 Copynumber: 9.9 Consensus size: 25
38433328 TACACTTAAA
*
38433338 TACATAACTTACATAATACACAACT
1 TACATAACTTACATAATACATAACT
* *
38433363 TA-ATTAA--T--ATTATACATAACA
1 TACA-TAACTTACATAATACATAACT
* *
38433384 TACATAA--TACACAATACACAACT
1 TACATAACTTACATAATACATAACT
* *
38433407 TA-ATTAA--T--ATTATACATAACA
1 TACA-TAACTTACATAATACATAACT
38433428 TACATAA--TACATAATACACATAACT
1 TACATAACTTACATAAT--ACATAACT
*
38433453 TACAT-A-GTACATAACTAACATAA--
1 TACATAACTTACATAA-T-ACATAACT
* * * *
38433476 TACACAACTTACGTAACTTAAATAAGT
1 TACATAACTTACATAA--TACATAACT
*
38433503 TACATAGCTTACATAATACATAACT
1 TACATAACTTACATAATACATAACT
*
38433528 TACATAACTTATATAATACATAACT
1 TACATAACTTACATAATACATAACT
* *
38433553 TACATAATTTACCTAATACATAA
1 TACATAACTTACATAATACATAA
38433576 ATATATATCA
Statistics
Matches: 167, Mismatches: 29, Indels: 34
0.73 0.13 0.15
Matches are distributed among these distances:
21 31 0.19
22 3 0.02
23 24 0.14
24 3 0.02
25 91 0.54
26 2 0.01
27 13 0.08
ACGTcount: A:0.49, C:0.18, G:0.02, T:0.31
Consensus pattern (25 bp):
TACATAACTTACATAATACATAACT
Found at i:38435360 original size:21 final size:21
Alignment explanation
Indices: 38435334--38435404 Score: 124
Period size: 21 Copynumber: 3.4 Consensus size: 21
38435324 CTAGAACTTA
38435334 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCGGCAGCGAGGG
*
38435355 AAGCAGAGGTGGCAGCGAGGG
1 AAGCAGAGGCGGCAGCGAGGG
*
38435376 AAGCAGAGGCAGCAGCGAGGG
1 AAGCAGAGGCGGCAGCGAGGG
38435397 AAGCAGAG
1 AAGCAGAG
38435405 CAAGCAGAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 47 1.00
ACGTcount: A:0.32, C:0.17, G:0.49, T:0.01
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCGAGGG
Found at i:38437999 original size:43 final size:42
Alignment explanation
Indices: 38437947--38438128 Score: 233
Period size: 43 Copynumber: 4.3 Consensus size: 42
38437937 TCATCAACAA
* **
38437947 TAGCAGCGTTTGTGAAGG-AAGCGCCGCTAAAGAACATGACCTT
1 TAGCGGCGTTTGTG--GGAAAGCGCCGCTAAAGAACATGGTCTT
* *
38437990 TAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGAACATGTTCTT
1 TAGCGGCGTTTGTGGG-AAAGCGCCGCTAAAGAACATGGTCTT
*
38438033 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGAACATGGTCTT
1 TAGCGGCGTTTGTG-GGAAAGCGCCGCTAAAGAACATGGTCTT
* *
38438076 TAGCGGCGTTTTTGGGAAAAGCGTCGCTAAAGAACATGGTCTT
1 TAGCGGCGTTTGTGGG-AAAGCGCCGCTAAAGAACATGGTCTT
38438119 T-GCGGCGTTT
1 TAGCGGCGTTT
38438129 ATTTGTATAA
Statistics
Matches: 125, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
41 2 0.02
42 10 0.08
43 112 0.90
44 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (42 bp):
TAGCGGCGTTTGTGGGAAAGCGCCGCTAAAGAACATGGTCTT
Found at i:38438057 original size:86 final size:86
Alignment explanation
Indices: 38437947--38438128 Score: 269
Period size: 86 Copynumber: 2.1 Consensus size: 86
38437937 TCATCAACAA
* *
38437947 TAGCAGCGTTTGTGAAGGAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTGTGGGAAAAGC
1 TAGCGGCGTTTGTGAAGAAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTGTGGGAAAAGC
*
38438012 ACCGCTAAAGAACATGTTCTT
66 ACCGCTAAAGAACATGGTCTT
** *
38438033 TAGCGGCGTTTGTG-AGAAAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTGGGAAAAG
1 TAGCGGCGTTTGTGAAG-AAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTGTGGGAAAAG
**
38438097 CGTCGCTAAAGAACATGGTCTT
65 CACCGCTAAAGAACATGGTCTT
38438119 T-GCGGCGTTT
1 TAGCGGCGTTT
38438129 ATTTGTATAA
Statistics
Matches: 87, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
85 11 0.13
86 76 0.87
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (86 bp):
TAGCGGCGTTTGTGAAGAAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTGTGGGAAAAGC
ACCGCTAAAGAACATGGTCTT
Found at i:38440110 original size:75 final size:75
Alignment explanation
Indices: 38439987--38440142 Score: 312
Period size: 75 Copynumber: 2.1 Consensus size: 75
38439977 ATATCAAGTC
38439987 TTTGGACAGTAATATTAACAGTAAGCGGTACTCTCACTACAGTAAAACAGGCTTTTAGCGGTATT
1 TTTGGACAGTAATATTAACAGTAAGCGGTACTCTCACTACAGTAAAACAGGCTTTTAGCGGTATT
38440052 TTTAGTGGCG
66 TTTAGTGGCG
38440062 TTTGGACAGTAATATTAACAGTAAGCGGTACTCTCACTACAGTAAAACAGGCTTTTAGCGGTATT
1 TTTGGACAGTAATATTAACAGTAAGCGGTACTCTCACTACAGTAAAACAGGCTTTTAGCGGTATT
38440127 TTTAGTGGCG
66 TTTAGTGGCG
38440137 TTTGGA
1 TTTGGA
38440143 TAAAAAACGC
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 81 1.00
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (75 bp):
TTTGGACAGTAATATTAACAGTAAGCGGTACTCTCACTACAGTAAAACAGGCTTTTAGCGGTATT
TTTAGTGGCG
Found at i:38440209 original size:39 final size:39
Alignment explanation
Indices: 38440145--38440260 Score: 135
Period size: 39 Copynumber: 2.9 Consensus size: 39
38440135 CGTTTGGATA
*
38440145 AAAAACGCCGCTATAAATCGAGCATTAGCGGCGCTCTTAG
1 AAAAACGCCGCTA-AAATAGAGCATTAGCGGCGCTCTTAG
* * * **
38440185 GAAAATGCCGCTAAAATAGAGCATTAGCGGCGCTTTTTT
1 AAAAACGCCGCTAAAATAGAGCATTAGCGGCGCTCTTAG
* *
38440224 AAAAAGGCCGCTAAAAATAGAGCATTAGTGGCG-TCTT
1 AAAAACGCCGCT-AAAATAGAGCATTAGCGGCGCTCTT
38440261 CTAGGAAGCG
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
39 35 0.54
40 30 0.46
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (39 bp):
AAAAACGCCGCTAAAATAGAGCATTAGCGGCGCTCTTAG
Found at i:38440274 original size:40 final size:40
Alignment explanation
Indices: 38440150--38440280 Score: 117
Period size: 40 Copynumber: 3.3 Consensus size: 40
38440140 GGATAAAAAA
* * *
38440150 CGCCGCTATAAATCGAGCATTAGCGGCG-C-TCTTAGGAAAA
1 CGCCGCTAAAAATAGAGCATTAGCGGCGTCTTC-TAGG-AAG
* * * **
38440190 TGCCGCT-AAAATAGAGCATTAGCGGCGCTTTTTTAAAAAG
1 CGCCGCTAAAAATAGAGCATTAGCGGCG-TCTTCTAGGAAG
*
38440230 -GCCGCTAAAAATAGAGCATTAGTGGCGTCTTCTAGGAAG
1 CGCCGCTAAAAATAGAGCATTAGCGGCGTCTTCTAGGAAG
*
38440269 CGCCGCAAAAAA
1 CGCCGCTAAAAA
38440281 CCTAAGCCCC
Statistics
Matches: 72, Mismatches: 14, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
39 32 0.44
40 37 0.51
41 2 0.03
42 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.21
Consensus pattern (40 bp):
CGCCGCTAAAAATAGAGCATTAGCGGCGTCTTCTAGGAAG
Found at i:38440462 original size:40 final size:40
Alignment explanation
Indices: 38440408--38440504 Score: 167
Period size: 40 Copynumber: 2.4 Consensus size: 40
38440398 TTGTCTATCT
*
38440408 ATTTATTATTTAATTGATTTATTTATATTAGTTAAAATTCA
1 ATTTATT-TTTAATTGATTTATTTATATTAATTAAAATTCA
*
38440449 ATTTATTTTTAATTTATTTATTTATATTAATTAAAATTCA
1 ATTTATTTTTAATTGATTTATTTATATTAATTAAAATTCA
38440489 ATTTATTTTTAATTGA
1 ATTTATTTTTAATTGA
38440505 GTATTTAAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
40 46 0.87
41 7 0.13
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (40 bp):
ATTTATTTTTAATTGATTTATTTATATTAATTAAAATTCA
Found at i:38440752 original size:14 final size:14
Alignment explanation
Indices: 38440733--38440836 Score: 70
Period size: 14 Copynumber: 7.4 Consensus size: 14
38440723 TATCACTATA
*
38440733 GTTTAGGGTTTTTG
1 GTTTAGGGTTTATG
*
38440747 GTTTAGGGTATATG
1 GTTTAGGGTTTATG
* *
38440761 GTTTAGAGTTTAAG
1 GTTTAGGGTTTATG
*
38440775 GTTTAGGTGTTACCAT-
1 GTTTAGG-GTT--TATG
*
38440791 -TTTAAGGTTTATG
1 GTTTAGGGTTTATG
* *
38440804 GATTATGGG-CTATG
1 GTTTA-GGGTTTATG
*
38440818 GTTTATGGTTTATG
1 GTTTAGGGTTTATG
38440832 GTTTA
1 GTTTA
38440837 TGATTTAAAG
Statistics
Matches: 67, Mismatches: 16, Indels: 14
0.69 0.16 0.14
Matches are distributed among these distances:
12 2 0.03
13 2 0.03
14 52 0.78
15 10 0.15
17 1 0.01
ACGTcount: A:0.19, C:0.03, G:0.30, T:0.48
Consensus pattern (14 bp):
GTTTAGGGTTTATG
Found at i:38440809 original size:7 final size:7
Alignment explanation
Indices: 38440791--38440843 Score: 61
Period size: 7 Copynumber: 7.6 Consensus size: 7
38440781 GTGTTACCAT
*
38440791 TTTAAGG
1 TTTATGG
38440798 TTTATGG
1 TTTATGG
*
38440805 ATTATGG
1 TTTATGG
**
38440812 GCTATGG
1 TTTATGG
38440819 TTTATGG
1 TTTATGG
38440826 TTTATGG
1 TTTATGG
*
38440833 TTTATGA
1 TTTATGG
38440840 TTTA
1 TTTA
38440844 AAGGCTGTGG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 39 1.00
ACGTcount: A:0.21, C:0.02, G:0.26, T:0.51
Consensus pattern (7 bp):
TTTATGG
Found at i:38440838 original size:21 final size:21
Alignment explanation
Indices: 38440733--38440836 Score: 68
Period size: 21 Copynumber: 4.9 Consensus size: 21
38440723 TATCACTATA
* * *
38440733 GTTTAGGGTTTTTGGTTTAGG
1 GTTTATGGTTTATGGTTTAAG
*
38440754 GTATATGGTTTA-GAGTTTAAG
1 GTTTATGGTTTATG-GTTTAAG
***
38440775 GTTTA-GGTGTTACCATTTTAAG
1 GTTTATGGT-TTA-TGGTTTAAG
* ** *
38440797 GTTTATGGATTATGGGCTATG
1 GTTTATGGTTTATGGTTTAAG
38440818 GTTTATGGTTTATGGTTTA
1 GTTTATGGTTTATGGTTTA
38440837 TGATTTAAAG
Statistics
Matches: 61, Mismatches: 17, Indels: 10
0.69 0.19 0.11
Matches are distributed among these distances:
20 4 0.07
21 41 0.67
22 14 0.23
23 2 0.03
ACGTcount: A:0.19, C:0.03, G:0.30, T:0.48
Consensus pattern (21 bp):
GTTTATGGTTTATGGTTTAAG
Found at i:38440896 original size:8 final size:7
Alignment explanation
Indices: 38440879--38440922 Score: 56
Period size: 7 Copynumber: 6.3 Consensus size: 7
38440869 TTATGTGTTA
38440879 AGGGTTT
1 AGGGTTT
38440886 AGGGTTTT
1 AGGG-TTT
38440894 AGGGTTT
1 AGGGTTT
38440901 AGGGTTAT
1 AGGGTT-T
38440909 A--GTTT
1 AGGGTTT
38440914 AGGGTTT
1 AGGGTTT
38440921 AG
1 AG
38440923 ATTAACTAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
5 2 0.06
6 3 0.09
7 19 0.58
8 9 0.27
ACGTcount: A:0.18, C:0.00, G:0.39, T:0.43
Consensus pattern (7 bp):
AGGGTTT
Found at i:38440899 original size:15 final size:15
Alignment explanation
Indices: 38440879--38440920 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
38440869 TTATGTGTTA
38440879 AGGGTTTAGGGTTTT
1 AGGGTTTAGGGTTTT
*
38440894 AGGGTTTAGGGTTAT
1 AGGGTTTAGGGTTTT
38440909 A--GTTTAGGGTTT
1 AGGGTTTAGGGTTT
38440921 AGATTAACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 10 0.40
15 15 0.60
ACGTcount: A:0.17, C:0.00, G:0.38, T:0.45
Consensus pattern (15 bp):
AGGGTTTAGGGTTTT
Found at i:38440988 original size:7 final size:7
Alignment explanation
Indices: 38440972--38441020 Score: 62
Period size: 7 Copynumber: 7.0 Consensus size: 7
38440962 TATCATTATA
38440972 GTTTAGG
1 GTTTAGG
*
38440979 GTTTATG
1 GTTTAGG
38440986 GTTTAGG
1 GTTTAGG
* *
38440993 GTATATG
1 GTTTAGG
38441000 GTTTAGG
1 GTTTAGG
*
38441007 GTTTAAG
1 GTTTAGG
38441014 GTTTAGG
1 GTTTAGG
38441021 AGTTACTATC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.18, C:0.00, G:0.37, T:0.45
Consensus pattern (7 bp):
GTTTAGG
Found at i:38440989 original size:14 final size:14
Alignment explanation
Indices: 38440967--38441020 Score: 81
Period size: 14 Copynumber: 3.9 Consensus size: 14
38440957 TTAATTATCA
*
38440967 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
38440981 TTATGGTTTAGGGT
1 TTATGGTTTAGGGT
*
38440995 ATATGGTTTAGGGT
1 TTATGGTTTAGGGT
*
38441009 TTAAGGTTTAGG
1 TTATGGTTTAGG
38441021 AGTTACTATC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 36 1.00
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.46
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:38441061 original size:22 final size:22
Alignment explanation
Indices: 38441036--38441084 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
38441026 CTATCTTAAA
38441036 GTTTATG-GATTATGGA-TTATGG
1 GTTTATGCGATTAT-GATTTAT-G
38441058 GTTTA-GCGATTATGATTTATG
1 GTTTATGCGATTATGATTTATG
38441079 GTTTAT
1 GTTTAT
38441085 AGTTTAATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.22, C:0.02, G:0.27, T:0.49
Consensus pattern (22 bp):
GTTTATGCGATTATGATTTATG
Found at i:38441120 original size:239 final size:238
Alignment explanation
Indices: 38440700--38441139 Score: 600
Period size: 239 Copynumber: 1.8 Consensus size: 238
38440690 GAGATAGTAT
*
38440700 TAATTTTAAAATATTGAATTAATTATCACTATAGTTTAGGGTTTTTGGTTTAGGGTATATGGTTT
1 TAATTTTAAAATATTGAATTAATTATCACTATAGTTTAGGGTTTATGGTTTAGGGTATATGGTTT
* * * * *
38440765 AGAGTTTAAGGTTTAGGTGTTACCATTTTAAGGTTTATGGATTATGGGCTATGGTTTATGGTTTA
66 AGAGTTTAAGGTTTAGGAGTTACCATCTTAAAGTTTATGGATTATGGACTATGGTTTATGGATTA
* * * * *
38440830 TGGTTTATGATTTAAAGGCTGTGGTTTAAGGTTTAGAGATTATGTGTTAAGGGTTTAGGGTTTTA
131 TGATTTATGATTTAAAGGCTATGGTTTAAGGTTTAGAGATTATGGGTTAAGGG-CTAGGGGTTTA
38440895 GGGTTTAGGGTTATAGTTTAGGGTTTAGATTAACTAGTGTTTTC
195 GGGTTTAGGGTTATAGTTTAGGGTTTAGATTAACTAGTGTTTTC
*
38440939 TAATTTTAAAATATTGAATTAATTATCATTATAGTTTAGGGTTTATGGTTTAGGGTATATGGTTT
1 TAATTTTAAAATATTGAATTAATTATCACTATAGTTTAGGGTTTATGGTTTAGGGTATATGGTTT
* * *
38441004 AGGGTTTAAGGTTTAGGAGTTACTATCTTAAAGTTTATGGATTATGGATTATGGGTTTA-GCGAT
66 AGAGTTTAAGGTTTAGGAGTTACCATCTTAAAGTTTATGGATTATGGACTAT-GGTTTATG-GAT
* * ** ** *
38441068 TATGATTTATGGTTTATAGTTTAATGG-TTGGGGTTTA-AGGTT-TAGGGTTAAGGGCTAGGGGT
129 TATGATTTATGATTTAAAGGCT-ATGGTTTAAGGTTTAGAGATTAT-GGGTTAAGGGCTAGGGGT
*
38441130 TTAGTGTTTA
192 TTAGGGTTTA
38441140 TTTTTATGAT
Statistics
Matches: 174, Mismatches: 23, Indels: 9
0.84 0.11 0.04
Matches are distributed among these distances:
238 16 0.09
239 122 0.70
240 33 0.19
241 3 0.02
ACGTcount: A:0.25, C:0.03, G:0.27, T:0.45
Consensus pattern (238 bp):
TAATTTTAAAATATTGAATTAATTATCACTATAGTTTAGGGTTTATGGTTTAGGGTATATGGTTT
AGAGTTTAAGGTTTAGGAGTTACCATCTTAAAGTTTATGGATTATGGACTATGGTTTATGGATTA
TGATTTATGATTTAAAGGCTATGGTTTAAGGTTTAGAGATTATGGGTTAAGGGCTAGGGGTTTAG
GGTTTAGGGTTATAGTTTAGGGTTTAGATTAACTAGTGTTTTC
Found at i:38441537 original size:22 final size:22
Alignment explanation
Indices: 38441507--38441550 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
38441497 AGTAACAAAT
38441507 AAAAATA-TTACTTAAAATTTA
1 AAAAATATTTACTTAAAATTTA
*
38441528 AAAAATTATTTATTTAAAATTTA
1 AAAAA-TATTTACTTAAAATTTA
38441551 TATGAAAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 5 0.25
22 2 0.10
23 13 0.65
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAAATATTTACTTAAAATTTA
Found at i:38444872 original size:43 final size:43
Alignment explanation
Indices: 38444812--38444902 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
38444802 CTTTGAGTTC
* * * *
38444812 ATTA-CAAGATTTCCTTGATTAAGTACATGTATTATATCTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATCTTTT
* *
38444854 ATTACCAAGATTTACTTGATTAAGAAAATGCATTGTATGTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATCTTTT
38444897 ATTACC
1 ATTACC
38444903 TTGCATATGT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 4 0.10
43 38 0.90
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.44
Consensus pattern (43 bp):
ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATCTTTT
Found at i:38445234 original size:43 final size:43
Alignment explanation
Indices: 38445187--38445397 Score: 142
Period size: 43 Copynumber: 4.9 Consensus size: 43
38445177 GCATTTGTGT
**
38445187 AAAAAGCGCCGCTAAAGGTCAGTTCTATAGCGGCGTTTGTATG
1 AAAAAGCGCCGCTAAAAATCAGTTCTATAGCGGCGTTTGTATG
** * *
38445230 AAAAAGCGCCGCTAAAAATTTGTTTTATAGCGGCGTTTGT-GG
1 AAAAAGCGCCGCTAAAAATCAGTTCTATAGCGGCGTTTGTATG
* ** * ** * *
38445272 GAAAAGCATCGCTAAAAATGATGACCTATAGCAGCGTTTGT-GG
1 AAAAAGCGCCGCTAAAAATCA-GTTCTATAGCGGCGTTTGTATG
** * ** * *
38445315 GGAAAGCGCCGCTAAAATTCATGACCTATAGCGGCATTTGT-GG
1 AAAAAGCGCCGCTAAAAATCA-GTTCTATAGCGGCGTTTGTATG
* * **
38445358 AAAAAGCACCGCTAAAAGTCA-TGATATTAGCGGCGTTTGT
1 AAAAAGCGCCGCTAAAAATCAGTTCTA-TAGCGGCGTTTGT
38445398 GGGATAAGCG
Statistics
Matches: 136, Mismatches: 30, Indels: 5
0.80 0.18 0.03
Matches are distributed among these distances:
41 2 0.01
42 29 0.21
43 105 0.77
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.26
Consensus pattern (43 bp):
AAAAAGCGCCGCTAAAAATCAGTTCTATAGCGGCGTTTGTATG
Found at i:38445286 original size:85 final size:84
Alignment explanation
Indices: 38445176--38445434 Score: 225
Period size: 85 Copynumber: 3.0 Consensus size: 84
38445166 TGTTTTTAGT
* * * * *
38445176 GGCATTTGTGTAAAAAGCGCCGCTAAAGGTCAGTTCTATAGCGGCGTTTGTATGAAAAAGCGCCG
1 GGCATTTGTGGAAAAAGCACCGCTAAAAGTCAGTCCTATAGCGGCGTTTGT-GGAAAAAGCGCCG
***
38445241 CTAAAAATT-TGTTTTATAGC
65 CT-AAAATTATGACCTATAGC
* * * * * * * **
38445261 GGCGTTTGTGGGAAAAGCATCGCTAAAAATGATGACCTATAGCAGCGTTTGTGGGGAAAGCGCCG
1 GGCATTTGTGGAAAAAGCACCGCTAAAAGTCA-GTCCTATAGCGGCGTTTGTGGAAAAAGCGCCG
38445326 CTAAAATTCATGACCTATAGC
65 CTAAAATT-ATGACCTATAGC
** * *
38445347 GGCATTTGTGGAAAAAGCACCGCTAAAAGTCA-TGATATTAGCGGCGTTTGTGGGATAAGCGCCG
1 GGCATTTGTGGAAAAAGCACCGCTAAAAGTCAGTCCTA-TAGCGGCGTTTGTGGAAAAAGCGCCG
* * * *
38445411 GTAAAGTTCATGACTTTTAGC
65 CTAAAATT-ATGACCTATAGC
38445432 GGC
1 GGC
38445435 GTTTATTTCT
Statistics
Matches: 138, Mismatches: 32, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
84 8 0.06
85 79 0.57
86 51 0.37
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.26
Consensus pattern (84 bp):
GGCATTTGTGGAAAAAGCACCGCTAAAAGTCAGTCCTATAGCGGCGTTTGTGGAAAAAGCGCCGC
TAAAATTATGACCTATAGC
Found at i:38445422 original size:42 final size:42
Alignment explanation
Indices: 38445257--38445438 Score: 165
Period size: 43 Copynumber: 4.3 Consensus size: 42
38445247 ATTTGTTTTA
** ** *
38445257 TAGCGGCGTTTGTGGGAAAAGCATCGCTAAAAATGATGACCTA-
1 TAGCGGCGTTTGTGGG-AAAGCGCCGCTAAAGTTCATGA-CTAT
* *
38445300 TAGCAGCGTTTGTGGGGAAAGCGCCGCTAAAATTCATGACCTA-
1 TAGCGGCGTTTGT-GGGAAAGCGCCGCTAAAGTTCATGA-CTAT
* * *
38445343 TAGCGGCATTTGTGGAAAAAGCACCGCTAAAAG-TCATGA-TAT
1 TAGCGGCGTTTGTGG-GAAAGCGCCGCT-AAAGTTCATGACTAT
* *
38445385 TAGCGGCGTTTGTGGGATAAGCGCCGGTAAAGTTCATGACTTT
1 TAGCGGCGTTTGTGGGA-AAGCGCCGCTAAAGTTCATGACTAT
38445428 TAGCGGCGTTT
1 TAGCGGCGTTT
38445439 ATTTCTAAAA
Statistics
Matches: 117, Mismatches: 15, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
41 7 0.06
42 30 0.26
43 74 0.63
44 6 0.05
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (42 bp):
TAGCGGCGTTTGTGGGAAAGCGCCGCTAAAGTTCATGACTAT
Found at i:38445424 original size:128 final size:128
Alignment explanation
Indices: 38445189--38445438 Score: 279
Period size: 128 Copynumber: 2.0 Consensus size: 128
38445179 ATTTGTGTAA
* ** * * * * *
38445189 AAAGCGCCGCTAAAGGTCAGTTCTATAGCGGCGTTTGTATGAAAAAGCGCCGCTAAAAATTTGTT
1 AAAGCGCCGCTAAAAGTCAGACCTATAGCGGCATTTGTAGGAAAAAGCACCGCTAAAAATATGAT
* * *
38445254 TTATAGCGGCGTTTGTGGGAAAAGCATCGCTAAAAATGATGACCTATAGCAGCGTTTGTGGGG
66 ATATAGCGGCGTTTGTGGGAAAAGCACCGCTAAAAATCATGACCTATAGCAGCGTTTGTGGGG
* *
38445317 AAAGCGCCGCTAAAATTCATGACCTATAGCGGCATTTGT-GGAAAAAGCACCGCTAAAAGTCATG
1 AAAGCGCCGCTAAAAGTCA-GACCTATAGCGGCATTTGTAGGAAAAAGCACCGCTAAAAAT-ATG
* * * ** * * *
38445381 ATAT-TAGCGGCGTTTGTGGGATAAGCGCCGGTAAAGTTCATGACTTTTAGCGGCGTTT
64 ATATATAGCGGCGTTTGTGGGAAAAGCACCGCTAAAAATCATGACCTATAGCAGCGTTT
38445439 ATTTCTAAAA
Statistics
Matches: 99, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
128 79 0.80
129 20 0.20
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (128 bp):
AAAGCGCCGCTAAAAGTCAGACCTATAGCGGCATTTGTAGGAAAAAGCACCGCTAAAAATATGAT
ATATAGCGGCGTTTGTGGGAAAAGCACCGCTAAAAATCATGACCTATAGCAGCGTTTGTGGGG
Found at i:38461149 original size:14 final size:14
Alignment explanation
Indices: 38461130--38461156 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
38461120 GGTCGTCGGG
38461130 TGAAGCCTTGTGGA
1 TGAAGCCTTGTGGA
38461144 TGAAGCCTTGTGG
1 TGAAGCCTTGTGG
38461157 GCTTATCGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.15, G:0.37, T:0.30
Consensus pattern (14 bp):
TGAAGCCTTGTGGA
Found at i:38463663 original size:29 final size:31
Alignment explanation
Indices: 38463610--38463682 Score: 82
Period size: 28 Copynumber: 2.5 Consensus size: 31
38463600 TCCAAGCTTG
* * *
38463610 GATTTTTATAT-TTTCATGGTCATTCATTTT
1 GATTTTTATTTATTTCATGGTCATTCATGTA
38463640 GATTTTTATTTATTTCAT-G-CATTCATGTA
1 GATTTTTATTTATTTCATGGTCATTCATGTA
*
38463669 G-TTTTTATTCATTT
1 GATTTTTATTTATTT
38463683 TTATTTTGTC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
28 12 0.32
29 9 0.24
30 11 0.29
31 6 0.16
ACGTcount: A:0.21, C:0.10, G:0.10, T:0.60
Consensus pattern (31 bp):
GATTTTTATTTATTTCATGGTCATTCATGTA
Found at i:38464811 original size:51 final size:52
Alignment explanation
Indices: 38464734--38464841 Score: 200
Period size: 51 Copynumber: 2.1 Consensus size: 52
38464724 AGCAATAATT
38464734 AAAGGTTTGGGGGTGTGATAACTCTTGAAAAGAGTTATATTTTAAGCCTCTA
1 AAAGGTTTGGGGGTGTGATAACTCTTGAAAAGAGTTATATTTTAAGCCTCTA
*
38464786 AAAGGTTT-GGGGTTTGATAACTCTTGAAAAGAGTTATATTTTAAGCCTCTA
1 AAAGGTTTGGGGGTGTGATAACTCTTGAAAAGAGTTATATTTTAAGCCTCTA
38464837 AAAGG
1 AAAGG
38464842 AATTAATTAC
Statistics
Matches: 55, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 47 0.85
52 8 0.15
ACGTcount: A:0.32, C:0.09, G:0.24, T:0.34
Consensus pattern (52 bp):
AAAGGTTTGGGGGTGTGATAACTCTTGAAAAGAGTTATATTTTAAGCCTCTA
Found at i:38469625 original size:14 final size:14
Alignment explanation
Indices: 38469580--38469618 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
38469570 ATCATTATAG
38469580 TTTAGGGTTTATGA
1 TTTAGGGTTTATGA
* *
38469594 TTGAGGGTATATGA
1 TTTAGGGTTTATGA
38469608 TTTAGGGTTTA
1 TTTAGGGTTTA
38469619 AGGTTTAAGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (14 bp):
TTTAGGGTTTATGA
Found at i:38469662 original size:22 final size:21
Alignment explanation
Indices: 38469603--38469686 Score: 69
Period size: 22 Copynumber: 3.9 Consensus size: 21
38469593 ATTGAGGGTA
*
38469603 TATGATTTAGGGTTTAAGGTT
1 TATGATTTATGGTTTAAGGTT
* * **
38469624 TAAGAGTTACTATTTTAAGGTT
1 TATGATTTA-TGGTTTAAGGTT
* * *
38469646 TATGAATTATGGGTTTAAAGAT
1 TATGATTTAT-GGTTTAAGGTT
*
38469668 TATGGTTTATGGTTTAAGG
1 TATGATTTATGGTTTAAGG
38469687 GTTGAGATTT
Statistics
Matches: 47, Mismatches: 14, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
21 16 0.34
22 31 0.66
ACGTcount: A:0.29, C:0.01, G:0.25, T:0.45
Consensus pattern (21 bp):
TATGATTTATGGTTTAAGGTT
Found at i:38469697 original size:21 final size:20
Alignment explanation
Indices: 38469673--38469731 Score: 64
Period size: 21 Copynumber: 2.9 Consensus size: 20
38469663 AAGATTATGG
* *
38469673 TTTATGGTTTAAGGGTTGAGA
1 TTTAAGGTTTAGGGGTT-AGA
*
38469694 TTTAAAGTTTAGGGGTTAGA
1 TTTAAGGTTTAGGGGTTAGA
*
38469714 GTTTAAGGATTAGGGGTT
1 -TTTAAGGTTTAGGGGTT
38469732 TAGGATTTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 3 0.09
21 29 0.91
ACGTcount: A:0.25, C:0.00, G:0.34, T:0.41
Consensus pattern (20 bp):
TTTAAGGTTTAGGGGTTAGA
Found at i:38473808 original size:16 final size:16
Alignment explanation
Indices: 38473763--38473809 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
38473753 CGCTGTATTT
*
38473763 GAATAGAGGCATAATG
1 GAATAGAGGCGTAATG
*
38473779 GAATAGAAGCGTAATG
1 GAATAGAGGCGTAATG
*
38473795 GAATAGAGGTGTAAT
1 GAATAGAGGCGTAAT
38473810 AGCAAATCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.43, C:0.04, G:0.32, T:0.21
Consensus pattern (16 bp):
GAATAGAGGCGTAATG
Found at i:38474071 original size:14 final size:15
Alignment explanation
Indices: 38474032--38474073 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
38474022 TTTAATCATA
*
38474032 ATTATTATTAAATAT
1 ATTATAATTAAATAT
38474047 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
38474061 A-TATAATTTAATA
1 ATTATAATTAAATA
38474074 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:38474182 original size:16 final size:16
Alignment explanation
Indices: 38474138--38474184 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
38474128 TACTATAAAA
*
38474138 TATAATTTAACATA-AT
1 TATAA-TTAAAATATAT
*
38474154 TATTATT-AAATATAT
1 TATAATTAAAATATAT
38474169 TATAATTAAAATATAT
1 TATAATTAAAATATAT
38474185 AATTTAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 4 0.15
15 10 0.38
16 12 0.46
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TATAATTAAAATATAT
Found at i:38474303 original size:18 final size:17
Alignment explanation
Indices: 38474282--38474316 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
38474272 TTATTATTAA
*
38474282 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
38474300 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
38474317 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:38474403 original size:26 final size:25
Alignment explanation
Indices: 38474374--38474475 Score: 91
Period size: 26 Copynumber: 4.0 Consensus size: 25
38474364 TGATACTATA
38474374 AAATATAATTTGAAATAATTAATATT
1 AAATATAATTT-AAATAATTAATATT
* * *
38474400 AAATATATTTTAATTAAAATATATGATT
1 AAATATAATTTAAAT-AATTA-AT-ATT
* * *
38474428 TAATAAAATTTAAAATAATTATTATT
1 AAATATAATTT-AAATAATTAATATT
38474454 AAATATAATTT-AATAA-TAATAT
1 AAATATAATTTAAATAATTAATAT
38474476 ATAATTTATT
Statistics
Matches: 60, Mismatches: 12, Indels: 11
0.72 0.14 0.13
Matches are distributed among these distances:
23 5 0.08
24 5 0.08
25 3 0.05
26 26 0.43
27 3 0.05
28 15 0.25
29 3 0.05
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (25 bp):
AAATATAATTTAAATAATTAATATT
Found at i:38474446 original size:120 final size:120
Alignment explanation
Indices: 38474021--38474437 Score: 730
Period size: 120 Copynumber: 3.5 Consensus size: 120
38474011 ATTTAATCAT
38474021 ATTTAATCATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTAA-CATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
*
38474086 ATCAATATTCTTATATGAATTTACTCAAAGCATAATATATGATACTATAAAATATA
65 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
38474142 ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
1 ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
* *
38474207 TTAATATTCTTATATGAATTTACTCAAATCATAATATATGATA-TATAAAAGATA
66 TCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
*
38474261 ATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
1 ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
*
38474326 TCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATA
66 TCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
* * *
38474381 ATTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 ATTT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
38474438 TAAAATAATT
Statistics
Matches: 285, Mismatches: 9, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
119 115 0.40
120 162 0.57
121 8 0.03
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
TCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
Done.