Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 141 of 144
Found at i:43719366 original size:18 final size:17
Alignment explanation
Indices: 43719340--43719373 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
43719330 CCATATTGCG
43719340 GCCCATGTGGGCCCACAC
1 GCCCATGT-GGCCCACAC
*
43719358 GCCCGTGTGGCCCACA
1 GCCCATGTGGCCCACA
43719374 AAGCCCAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.44, G:0.29, T:0.12
Consensus pattern (17 bp):
GCCCATGTGGCCCACAC
Found at i:43727882 original size:43 final size:43
Alignment explanation
Indices: 43727810--43727916 Score: 133
Period size: 43 Copynumber: 2.5 Consensus size: 43
43727800 GTTTATCTAA
* * *
43727810 AAAAATGCCGTTAAAGGTCATGACCTTTAGCGGCGCTTCTCCC
1 AAAAACGCCGCTAAAGGTCATGACCTTTAGCGACGCTTCTCCC
* * *
43727853 ACAAACGCCGCTAAAGGTCATGACCTTTAGCGATGTTTCTCCC
1 AAAAACGCCGCTAAAGGTCATGACCTTTAGCGACGCTTCTCCC
** *
43727896 AAAAACGTAGCTAAATGTCAT
1 AAAAACGCCGCTAAAGGTCAT
43727917 AATTTAAAAA
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGGTCATGACCTTTAGCGACGCTTCTCCC
Found at i:43729025 original size:16 final size:16
Alignment explanation
Indices: 43729004--43729034 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
43728994 CCTTACACCT
*
43729004 AAAGATTTTTTAAAGA
1 AAAGATTTTTCAAAGA
43729020 AAAGATTTTTCAAAG
1 AAAGATTTTTCAAAG
43729035 TATGATTCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.03, G:0.13, T:0.35
Consensus pattern (16 bp):
AAAGATTTTTCAAAGA
Found at i:43732030 original size:179 final size:179
Alignment explanation
Indices: 43731729--43732936 Score: 2007
Period size: 179 Copynumber: 6.8 Consensus size: 179
43731719 CTCCAATTGC
* * ** *
43731729 CAACCTGCTCTCTTGCTACCTCAGAGAGATAAAGCTAGTGGCTAAAATCTGCTCCATTGTTGACA
1 CAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGG-TAAAATCTGCTCCATTGCCGATA
* ** * *
43731794 CATGGAGATAAGATTGACCAT-T-T-TCGATCTACTCCACTGCGACTTCAGGGAGATAAGATAC-
65 CATGGAGATAAGATTCACCATCTGTAAAGATCTACTCGACTGCCACTTCAGGGAGATAAGAT-CT
*
43731855 TCAATTTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACTC-TATCTT
129 TCAATCTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACTCAT-TCTT
* * * * *
43731906 CAACCTACTCTCTTGCTACCTTAAAGAGATAAGGCTGGTGGTAAAATCTACTCCATTACCGATAC
1 CAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCCGATAC
** * *
43731971 ATGGAGATAAGATTCACCATCTGCGAAGATCTACTCCACTGGCACTTCAGGGAGATAAGATCTTC
66 ATGGAGATAAGATTCACCATCTGTAAAGATCTACTCGACTGCCACTTCAGGGAGATAAGATCTTC
* * *
43732036 AATCTTCAGTCTGCTTTCTTGCTACCTTAAAAAGATAAGACTTATTCTT
131 AATCTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACTCATTCTT
* *
43732085 CAACCTGCTCTCTTGCTGCCTCAAAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCCGATAC
1 CAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCCGATAC
43732150 ATGGAGATAAGATTCACCATCTGTAAAGATCTACTCGACTGCCACTTCAGGGAGATAAGATCTTC
66 ATGGAGATAAGATTCACCATCTGTAAAGATCTACTCGACTGCCACTTCAGGGAGATAAGATCTTC
43732215 AATCTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACTCATTCTT
131 AATCTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACTCATTCTT
43732264 CAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCCGATAC
1 CAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCCGATAC
*
43732329 ATGAAGATAAGATTCACCATCTGTAAAGATCTACTCGACTGCCACTTCAGGGAGATAAGATCTTC
66 ATGGAGATAAGATTCACCATCTGTAAAGATCTACTCGACTGCCACTTCAGGGAGATAAGATCTTC
43732394 AATCTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACTCATTCTT
131 AATCTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACTCATTCTT
43732443 CAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCCGATAC
1 CAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCCGATAC
*
43732508 ATGAAGATAAGATTCACCATCTGTAAAGATCTACTCGACTGCCACTTCAGGGAGATAAGATCTTC
66 ATGGAGATAAGATTCACCATCTGTAAAGATCTACTCGACTGCCACTTCAGGGAGATAAGATCTTC
43732573 AATCTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACTCATTCTT
131 AATCTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACTCATTCTT
43732622 CAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCCGATAC
1 CAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCCGATAC
*
43732687 ATGAAGATAAGATTCACCATCTGTAAAGATCTACTCGACTGCCACTTCAGGGAGATAAGATCTTC
66 ATGGAGATAAGATTCACCATCTGTAAAGATCTACTCGACTGCCACTTCAGGGAGATAAGATCTTC
43732752 AATCTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACTCATTCTT
131 AATCTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACTCATTCTT
43732801 CAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCCGATAC
1 CAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCCGATAC
** ** * * *
43732866 ATGGAGATAAGATTCACCATCTGCGAAGATCTGTTTCG-TTG-CAATCTCAGGGAGATAAGATCC
66 ATGGAGATAAGATTCACCATCTGTAAAGATCT-ACTCGACTGCCACT-TCAGGGAGATAAGATCT
43732929 TCAATCTT
129 TCAATCTT
43732937 TACCAATGCC
Statistics
Matches: 981, Mismatches: 43, Indels: 12
0.95 0.04 0.01
Matches are distributed among these distances:
176 38 0.04
177 37 0.04
178 4 0.00
179 898 0.92
180 4 0.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (179 bp):
CAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCCGATAC
ATGGAGATAAGATTCACCATCTGTAAAGATCTACTCGACTGCCACTTCAGGGAGATAAGATCTTC
AATCTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACTCATTCTT
Found at i:43732093 original size:43 final size:45
Alignment explanation
Indices: 43732023--43732117 Score: 113
Period size: 43 Copynumber: 2.2 Consensus size: 45
43732013 CACTTCAGGG
** * *
43732023 AGATAAGATCTTCAATCTTCAGTCTGCTTTCTTGCTACCTTAAAA
1 AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAAAA
* * *
43732068 AGATAAGA-CTT-ATTCTTCAACCTGCTCTCTTGCTGCCTCAAAG
1 AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAAAA
43732111 AGATAAG
1 AGATAAG
43732118 GCTGGTGGTA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 32 0.74
44 3 0.07
45 8 0.19
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (45 bp):
AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAAAA
Found at i:43732272 original size:43 final size:45
Alignment explanation
Indices: 43732202--43732296 Score: 131
Period size: 43 Copynumber: 2.2 Consensus size: 45
43732192 CACTTCAGGG
** *
43732202 AGATAAGATCTTCAATCTTCAGTCTGCTTTCTTGCTACCTCAGAA
1 AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAA
* *
43732247 AGATAAGA-C-TCATTCTTCAACCTGCTCTCTTGCTACCTCAGAG
1 AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAA
43732290 AGATAAG
1 AGATAAG
43732297 GCTGGTGGTA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
43 36 0.80
44 1 0.02
45 8 0.18
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (45 bp):
AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAA
Found at i:43732451 original size:43 final size:45
Alignment explanation
Indices: 43732381--43732475 Score: 131
Period size: 43 Copynumber: 2.2 Consensus size: 45
43732371 CACTTCAGGG
** *
43732381 AGATAAGATCTTCAATCTTCAGTCTGCTTTCTTGCTACCTCAGAA
1 AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAA
* *
43732426 AGATAAGA-C-TCATTCTTCAACCTGCTCTCTTGCTACCTCAGAG
1 AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAA
43732469 AGATAAG
1 AGATAAG
43732476 GCTGGTGGTA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
43 36 0.80
44 1 0.02
45 8 0.18
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (45 bp):
AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAA
Found at i:43732630 original size:43 final size:45
Alignment explanation
Indices: 43732560--43732654 Score: 131
Period size: 43 Copynumber: 2.2 Consensus size: 45
43732550 CACTTCAGGG
** *
43732560 AGATAAGATCTTCAATCTTCAGTCTGCTTTCTTGCTACCTCAGAA
1 AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAA
* *
43732605 AGATAAGA-C-TCATTCTTCAACCTGCTCTCTTGCTACCTCAGAG
1 AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAA
43732648 AGATAAG
1 AGATAAG
43732655 GCTGGTGGTA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
43 36 0.80
44 1 0.02
45 8 0.18
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (45 bp):
AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAA
Found at i:43732809 original size:43 final size:45
Alignment explanation
Indices: 43732739--43732833 Score: 131
Period size: 43 Copynumber: 2.2 Consensus size: 45
43732729 CACTTCAGGG
** *
43732739 AGATAAGATCTTCAATCTTCAGTCTGCTTTCTTGCTACCTCAGAA
1 AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAA
* *
43732784 AGATAAGA-C-TCATTCTTCAACCTGCTCTCTTGCTACCTCAGAG
1 AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAA
43732827 AGATAAG
1 AGATAAG
43732834 GCTGGTGGTA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
43 36 0.80
44 1 0.02
45 8 0.18
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (45 bp):
AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAA
Found at i:43734143 original size:53 final size:54
Alignment explanation
Indices: 43734060--43734216 Score: 205
Period size: 51 Copynumber: 2.9 Consensus size: 54
43734050 ATTTTCTCTT
43734060 TTTTCATTTTTATTATTGAGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGG-CCC
1 TTTTCATTTTTA-T-TTG-GTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGACCC
* * *
43734116 TTTTCATTTTTATTTGGTTTCAAAGCGCCCTTTACGAGTTTTCACTTTGGACCC
1 TTTTCATTTTTATTTGGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGACCC
***
43734170 TTTT--TTTTT-TAAAGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGG
1 TTTTCATTTTTATTTGGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGG
43734217 GCTTCCCTTG
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
51 32 0.35
52 5 0.05
53 31 0.34
54 10 0.11
55 1 0.01
56 12 0.13
ACGTcount: A:0.15, C:0.22, G:0.17, T:0.46
Consensus pattern (54 bp):
TTTTCATTTTTATTTGGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGACCC
Found at i:43739179 original size:39 final size:39
Alignment explanation
Indices: 43739135--43739289 Score: 274
Period size: 39 Copynumber: 4.0 Consensus size: 39
43739125 ATTATATTAT
* *
43739135 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
43739174 CAGCACGAAGCCTGCGGGACTTTAGTCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
43739213 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
43739252 CAGCACGAAGCCTGCAGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
43739290 TCAATGTCTT
Statistics
Matches: 111, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 111 1.00
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:43743301 original size:11 final size:11
Alignment explanation
Indices: 43743285--43743315 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
43743275 GCTTTATTTC
43743285 ATTTTATTTTT
1 ATTTTATTTTT
43743296 ATTTTATTTTT
1 ATTTTATTTTT
43743307 A-TTTATTTT
1 ATTTTATTTT
43743316 CATAAATTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.40
11 12 0.60
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (11 bp):
ATTTTATTTTT
Found at i:43748497 original size:20 final size:21
Alignment explanation
Indices: 43748472--43748511 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
43748462 CTCTTGAAAC
* *
43748472 AGGGC-ACATGCCGGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
43748492 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
43748512 TCATTATAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.20, C:0.25, G:0.42, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:43752246 original size:19 final size:22
Alignment explanation
Indices: 43752196--43752239 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
43752186 TTTAAAAATT
43752196 GAGCTATTTAATTCTTCTAGCA
1 GAGCTATTTAATTCTTCTAGCA
43752218 GAGCTATTTAATTCTTCTAGCA
1 GAGCTATTTAATTCTTCTAGCA
43752240 ACTTTTACAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (22 bp):
GAGCTATTTAATTCTTCTAGCA
Found at i:43755585 original size:15 final size:15
Alignment explanation
Indices: 43755539--43755585 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
43755529 TGATATACAT
43755539 AACATATATATAAAAA
1 AACA-ATATATAAAAA
*
43755555 AACAATAAATAAAAA
1 AACAATATATAAAAA
* *
43755570 AA-ATTATATAATAA
1 AACAATATATAAAAA
43755584 AA
1 AA
43755586 TGTAATATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 11 0.41
15 12 0.44
16 4 0.15
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.23
Consensus pattern (15 bp):
AACAATATATAAAAA
Found at i:43755674 original size:11 final size:11
Alignment explanation
Indices: 43755531--43755675 Score: 54
Period size: 11 Copynumber: 12.7 Consensus size: 11
43755521 GCGATACATG
43755531 ATATACATAACAT
1 ATATA-ATAA-AT
*
43755544 ATAT-ATAAAA
1 ATATAATAAAT
* *
43755554 AAACAATAAAT
1 ATATAATAAAT
*
43755565 A-A-AAAAAATT
1 ATATAATAAA-T
43755575 ATATAATAAA-
1 ATATAATAAAT
*
43755585 ATGTAATATAA-
1 ATATAATA-AAT
43755596 ATATATATGAAAT
1 ATATA-AT-AAAT
43755609 ATAATAGATATAAT
1 AT-ATA-ATA-AAT
*
43755623 ATAAAATAACAT
1 ATATAATAA-AT
*
43755635 GTA-AA-ACAAT
1 ATATAATA-AAT
43755645 ATATATATAAAT
1 ATATA-ATAAAT
43755657 A-ATTAATAAAT
1 ATA-TAATAAAT
43755668 ATATAATA
1 ATATAATA
43755676 TATGTGAAAA
Statistics
Matches: 103, Mismatches: 12, Indels: 36
0.68 0.08 0.24
Matches are distributed among these distances:
9 5 0.05
10 18 0.17
11 35 0.34
12 24 0.23
13 11 0.11
14 10 0.10
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (11 bp):
ATATAATAAAT
Found at i:43788464 original size:33 final size:31
Alignment explanation
Indices: 43788384--43788464 Score: 99
Period size: 31 Copynumber: 2.5 Consensus size: 31
43788374 CTTCCTGCAT
43788384 TAAAATCCAACCAAAAACAACAAATATAGCA
1 TAAAATCCAACCAAAAACAACAAATATAGCA
* * * *
43788415 TGAAATCCAACCAAAAACAGCAAATGTAGTA
1 TAAAATCCAACCAAAAACAACAAATATAGCA
*
43788446 TAAAAAATACAACCAAAAA
1 T--AAAATCCAACCAAAAA
43788465 TATTAAATCT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
31 28 0.67
33 14 0.33
ACGTcount: A:0.60, C:0.20, G:0.06, T:0.14
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAGCA
Found at i:43794136 original size:9 final size:9
Alignment explanation
Indices: 43794122--43794297 Score: 71
Period size: 9 Copynumber: 20.0 Consensus size: 9
43794112 TATGTATTAC
*
43794122 GTAAGTTAA
1 GTAAGTTAT
*
43794131 GTAAGTTTT
1 GTAAGTTAT
43794140 GTAAGTTAT
1 GTAAGTTAT
*
43794149 GTAAGTCAT
1 GTAAGTTAT
* *
43794158 GATATGATAT
1 G-TAAGTTAT
* *
43794168 -AAATTTAT
1 GTAAGTTAT
*
43794176 GTAAGGTAT
1 GTAAGTTAT
43794185 GTAAGTTAT
1 GTAAGTTAT
*
43794194 GTAAATTAT
1 GTAAGTTAT
* **
43794203 GATATGAAAT
1 G-TAAGTTAT
* *
43794213 AT-ATTTAT
1 GTAAGTTAT
*
43794221 GT-A-TTAC
1 GTAAGTTAT
*
43794228 GCAAGTTAT
1 GTAAGTTAT
43794237 GTAAGTTAT
1 GTAAGTTAT
*
43794246 -TATA-TGAT
1 GTA-AGTTAT
* *
43794254 ATATATTTAT
1 GTA-AGTTAT
43794264 GT-A-TTAT
1 GTAAGTTAT
43794271 GTAAGTTAT
1 GTAAGTTAT
**
43794280 GTAAGTTGC
1 GTAAGTTAT
43794289 GTAAGTTAT
1 GTAAGTTAT
43794298 TATATGATAT
Statistics
Matches: 120, Mismatches: 37, Indels: 20
0.68 0.21 0.11
Matches are distributed among these distances:
7 10 0.08
8 16 0.13
9 81 0.68
10 13 0.11
ACGTcount: A:0.36, C:0.02, G:0.18, T:0.44
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:43794245 original size:52 final size:52
Alignment explanation
Indices: 43794106--43794341 Score: 199
Period size: 52 Copynumber: 4.7 Consensus size: 52
43794096 TTTTCAAGTG
* * * *
43794106 TATATTTATGTATTACGTAAGTTAAGTAAGTTTTGTAAGTTATGTAAGTCATGATA
1 TATATTTATGTATTATGTAAGTTATGTAAGTTATGTAAATTATG--A-T-ATGATA
** * *
43794162 TGATA--TAAAT-TTATGTAAGGTATGTAAGTTATGTAAATTATGATATGAAA
1 T-ATATTTATGTATTATGTAAGTTATGTAAGTTATGTAAATTATGATATGATA
* *
43794212 TATATTTATGTATTACGCAAGTTATGTAAG---T-T--A-T-T-ATATGATA
1 TATATTTATGTATTATGTAAGTTATGTAAGTTATGTAAATTATGATATGATA
** * *
43794255 TATATTTATGTATTATGTAAGTTATGTAAGTTGCGTAAGTTATTATATGATA
1 TATATTTATGTATTATGTAAGTTATGTAAGTTATGTAAATTATGATATGATA
* *
43794307 TATATTTATGTATTATGTAAGTTACGTAAGCTATG
1 TATATTTATGTATTATGTAAGTTATGTAAGTTATG
43794342 ATATCATGTA
Statistics
Matches: 145, Mismatches: 22, Indels: 30
0.74 0.11 0.15
Matches are distributed among these distances:
43 35 0.24
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 1 0.01
49 4 0.03
50 7 0.05
51 5 0.03
52 55 0.38
54 27 0.19
55 3 0.02
56 1 0.01
57 3 0.02
ACGTcount: A:0.35, C:0.03, G:0.17, T:0.45
Consensus pattern (52 bp):
TATATTTATGTATTATGTAAGTTATGTAAGTTATGTAAATTATGATATGATA
Found at i:43794251 original size:43 final size:43
Alignment explanation
Indices: 43794139--43794345 Score: 216
Period size: 43 Copynumber: 4.6 Consensus size: 43
43794129 AAGTAAGTTT
* * *
43794139 TGTAAGTTATGTAAGTCATGATATGATATAAATTTATGTAAGGTA
1 TGTAAGTTATGTAAGTTATGATATGATATATATTTATGT-A-TTA
* *
43794184 TGTAAGTTATGTAAATTATGATATGAAATATATTTATGTATTA
1 TGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTA
* * *
43794227 CGCAAGTTATGTAAGTTATTATATGATATATATTTATGTATTA
1 TGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTA
*
43794270 TGTAAGTTATGTAAGTTGCGTAAGTTATTATATGATATATATTTATGTATTA
1 TGTAAG---T-T-A--T--GTAAGTTATGATATGATATATATTTATGTATTA
* *
43794322 TGTAAGTTACGTAAGCTATGATAT
1 TGTAAGTTATGTAAGTTATGATAT
43794346 CATGTATTTA
Statistics
Matches: 138, Mismatches: 15, Indels: 20
0.80 0.09 0.12
Matches are distributed among these distances:
43 56 0.41
44 1 0.01
45 35 0.25
46 1 0.01
47 2 0.01
48 2 0.01
49 1 0.01
50 1 0.01
52 39 0.28
ACGTcount: A:0.36, C:0.03, G:0.17, T:0.44
Consensus pattern (43 bp):
TGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTA
Found at i:43794312 original size:95 final size:95
Alignment explanation
Indices: 43794172--43794345 Score: 249
Period size: 95 Copynumber: 1.8 Consensus size: 95
43794162 TGATATAAAT
* *
43794172 TTATGTAAGGTATGTAAGTTATGTAAATTATGATATGAAATATATTTATGTATTACGCAAGTTAT
1 TTATGTAAGGTATGTAAGTTACGTAAATTATGATATGAAATATATTTATGTATTACGCAAGTTAC
* *
43794237 GTAAGTTATTATATGATATATATTTATGTA
66 GTAAGCTATGATATGATATATATTTATGTA
* * * * * * *
43794267 TTATGTAAGTTATGTAAGTTGCGTAAGTTATTATATGATATATATTTATGTATTATGTAAGTTAC
1 TTATGTAAGGTATGTAAGTTACGTAAATTATGATATGAAATATATTTATGTATTACGCAAGTTAC
43794332 GTAAGCTATGATAT
66 GTAAGCTATGATAT
43794346 CATGTATTTA
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
95 68 1.00
ACGTcount: A:0.35, C:0.03, G:0.17, T:0.45
Consensus pattern (95 bp):
TTATGTAAGGTATGTAAGTTACGTAAATTATGATATGAAATATATTTATGTATTACGCAAGTTAC
GTAAGCTATGATATGATATATATTTATGTA
Found at i:43794364 original size:43 final size:43
Alignment explanation
Indices: 43794276--43794364 Score: 99
Period size: 43 Copynumber: 2.1 Consensus size: 43
43794266 ATTATGTAAG
* * * * * *
43794276 TTATGTAAGTTGCGTAAGTTATTATATGATATATATTTATGTA
1 TTATGTAAGTTACGTAAGCTATGATATCATATATATTAATATA
*
43794319 TTATGTAAGTTACGTAAGCTATGATATCATGTAT-TTAATTATA
1 TTATGTAAGTTACGTAAGCTATGATATCATATATATTAA-TATA
43794362 TTA
1 TTA
43794365 ATTAAATTTA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
42 3 0.08
43 35 0.92
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (43 bp):
TTATGTAAGTTACGTAAGCTATGATATCATATATATTAATATA
Found at i:43794375 original size:19 final size:19
Alignment explanation
Indices: 43794351--43794424 Score: 78
Period size: 19 Copynumber: 3.8 Consensus size: 19
43794341 GATATCATGT
* *
43794351 ATTTAATTATATTAATTAA
1 ATTTAAATAAATTAATTAA
*
43794370 ATTTAAATAAATTAATCCAA
1 ATTTAAATAAATTAAT-TAA
* *
43794390 A-TTATATTAATTAATTAA
1 ATTTAAATAAATTAATTAA
43794408 TATTTAAATAAATTAAT
1 -ATTTAAATAAATTAAT
43794425 CCAAATTATA
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
18 2 0.05
19 27 0.61
20 15 0.34
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (19 bp):
ATTTAAATAAATTAATTAA
Found at i:43794417 original size:39 final size:38
Alignment explanation
Indices: 43794356--43794439 Score: 143
Period size: 39 Copynumber: 2.2 Consensus size: 38
43794346 CATGTATTTA
43794356 ATTATATTAATTAAATTTAAATAAATTAATCCAAATTAT
1 ATTA-ATTAATTAAATTTAAATAAATTAATCCAAATTAT
43794395 ATTAATTAATTAATATTTAAATAAATTAATCCAAATTAT
1 ATTAATTAATTAA-ATTTAAATAAATTAATCCAAATTAT
43794434 A-TAATT
1 ATTAATT
43794440 TTAAAAATTG
Statistics
Matches: 44, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
38 14 0.32
39 30 0.68
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (38 bp):
ATTAATTAATTAAATTTAAATAAATTAATCCAAATTAT
Found at i:43796010 original size:22 final size:21
Alignment explanation
Indices: 43795980--43796045 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
43795970 TACAAATTAA
43795980 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
43796002 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
43796023 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
43796042 ATCT
1 ATCT
43796046 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:43796032 original size:19 final size:19
Alignment explanation
Indices: 43795997--43796075 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
43795987 AGATTACAAG
43795997 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
43796018 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
43796037 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
43796054 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
43796073 ATC
1 ATC
43796076 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
20 1 0.02
21 8 0.14
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:43796039 original size:14 final size:15
Alignment explanation
Indices: 43796019--43796075 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
43796009 AGATTGCATA
43796019 TCATATCTAAGATTG
1 TCATATCTAAGATTG
43796034 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
43796053 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
43796070 -CATATC
1 TCATATC
43796076 CTTAAAGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.16
17 17 0.45
19 15 0.39
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:43796061 original size:36 final size:39
Alignment explanation
Indices: 43795997--43796075 Score: 128
Period size: 36 Copynumber: 2.1 Consensus size: 39
43795987 AGATTACAAG
43795997 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTG-ATATCATATCTAAGATTGCAT
43796037 ATCATATC-T-AAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTGATATCATATCTAAGATTGCAT
43796073 ATC
1 ATC
43796076 CTTAAAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
39 1 0.03
40 8 0.21
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (39 bp):
ATCATATCTTCAAGATTGATATCATATCTAAGATTGCAT
Found at i:43798489 original size:75 final size:74
Alignment explanation
Indices: 43798376--43798620 Score: 255
Period size: 74 Copynumber: 3.3 Consensus size: 74
43798366 TACACATCTG
* * * ** * * *
43798376 CGGCATTTTTGTTGAAAACGCCAGTAAAAATAATGATAAAAACGACGACCTTTTGCTCTCTTAAT
1 CGGCACTTTTGTCGAAAATGCCACAAAAAACAAGGATAAAAACGACGACATTTTGCTCTCTTAAT
43798441 ACATATTTTA
66 ACATA-TTTA
* * * * **
43798451 CGGC-GTTTATGTCGAAAATGCCACAAAAAACAAGGATAAAAATGACGTCATTTTCCTCTCACAA
1 CGGCACTTT-TGTCGAAAATGCCACAAAAAACAAGGATAAAAACGACGACATTTTGCTCTCTTAA
*
43798515 TACATATTTG
65 TACATATTTA
* *
43798525 CGGCACTTTTGTCGAAAATGCCACTAAAAACAAGGATAAAAACG-CGGACATTTTGCACTCTTAA
1 CGGCACTTTTGTCGAAAATGCCACAAAAAACAAGGATAAAAACGAC-GACATTTTGCTCTCTTAA
*
43798589 TACA-ACTTA
65 TACATATTTA
*
43798598 GCGGCA-TTTTTTCGAAAATGCCA
1 -CGGCACTTTTGTCGAAAATGCCA
43798621 GTAATGCACA
Statistics
Matches: 141, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
73 20 0.14
74 65 0.46
75 56 0.40
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (74 bp):
CGGCACTTTTGTCGAAAATGCCACAAAAAACAAGGATAAAAACGACGACATTTTGCTCTCTTAAT
ACATATTTA
Found at i:43798723 original size:114 final size:111
Alignment explanation
Indices: 43798544--43798838 Score: 270
Period size: 115 Copynumber: 2.6 Consensus size: 111
43798534 TGTCGAAAAT
* ** *
43798544 GCCACTAAAAACAAGGATAAAAACG-CGGACATTTTGCACTCTTAATACAACTTAGCGGCAT-TT
1 GCCACTAAAAACAAGGATAAAAACGAC-GACATTTTGCACTCTTAATGCATTTTTGCGG--TGTT
* * * * * **
43798607 TTTCGAAAATGCCAGTAATGCACAACCTTTTGCGGCGTTTTTTGTTGAAAC
63 TTTCGAAAAT-CCAGTAAAGAACAACATTTTGCGGC-ATTTCTGAGGAAAC
* * *
43798658 GCCACTAAAAACAAGGATAAAAAACGACAACATTTTGTACTCTTAATGCATTTTTGTGGTGTTTT
1 GCCACTAAAAACAAGGAT-AAAAACGACGACATTTTGCACTCTTAATGCATTTTTGCGGTG--TT
* * * *
43798723 TGTTCTAAACTCCGGTAAAGAACAACATTTTGTGGCATTTCTGAGGAAAC
63 T-TTCGAAAATCCAGTAAAGAACAACATTTTGCGGCATTTCTGAGGAAAC
* * * * * *
43798773 ACCACTAAAAACAAGCATGGAAAACGACGACGTTTTGCACTCTTAATGCATTTTTGGGGCGTTTT
1 GCCACTAAAAACAAGGAT-AAAAACGACGACATTTTGCACTCTTAATGCATTTTTGCGGTGTTTT
43798838 T
65 T
43798839 TGTTGAAAAC
Statistics
Matches: 148, Mismatches: 27, Indels: 14
0.78 0.14 0.07
Matches are distributed among these distances:
112 2 0.01
113 4 0.03
114 18 0.12
115 93 0.63
116 24 0.16
117 7 0.05
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.31
Consensus pattern (111 bp):
GCCACTAAAAACAAGGATAAAAACGACGACATTTTGCACTCTTAATGCATTTTTGCGGTGTTTTT
CGAAAATCCAGTAAAGAACAACATTTTGCGGCATTTCTGAGGAAAC
Found at i:43798772 original size:115 final size:116
Alignment explanation
Indices: 43798653--43798864 Score: 309
Period size: 115 Copynumber: 1.8 Consensus size: 116
43798643 GTTTTTTGTT
* * * * *
43798653 GAAACGCCACTAAAAACAAGGATAAAAAACGACAACATTTTGTACTCTTAATGCATTTTTGTGGT
1 GAAACACCACTAAAAACAAGCATAAAAAACGACAACATTTTGCACTCTTAATGCATTTTTGGGGC
* *
43798718 G-TTTTTGTTCTAAACTCCGGTAAAGAACAACATTTTGTGGCATTTCTGAG
66 GTTTTTTGTTCAAAACGCCGGTAAAGAACAACATTTTGTGGCATTTCTGAG
** * *
43798768 GAAACACCACTAAAAACAAGCATGGAAAACGACGACGTTTTGCACTCTTAATGCATTTTTGGGGC
1 GAAACACCACTAAAAACAAGCATAAAAAACGACAACATTTTGCACTCTTAATGCATTTTTGGGGC
*
43798833 GTTTTTTGTTGAAAACGCCGGTAAAGAACAAC
66 GTTTTTTGTTCAAAACGCCGGTAAAGAACAAC
43798865 CTGTTGCACT
Statistics
Matches: 84, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
115 57 0.68
116 27 0.32
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (116 bp):
GAAACACCACTAAAAACAAGCATAAAAAACGACAACATTTTGCACTCTTAATGCATTTTTGGGGC
GTTTTTTGTTCAAAACGCCGGTAAAGAACAACATTTTGTGGCATTTCTGAG
Found at i:43798977 original size:7 final size:7
Alignment explanation
Indices: 43798965--43799026 Score: 54
Period size: 7 Copynumber: 8.9 Consensus size: 7
43798955 CATTGGTAAT
43798965 CCTAAAC
1 CCTAAAC
43798972 CCTAAAC
1 CCTAAAC
* *
43798979 ACTAACC
1 CCTAAAC
43798986 CCT-AAC
1 CCTAAAC
*
43798992 CCTTAAC
1 CCTAAAC
* *
43798999 TCTTAAC
1 CCTAAAC
43799006 CCTTAAAC
1 CC-TAAAC
*
43799014 CCCAAAC
1 CCTAAAC
43799021 CCTAAA
1 CCTAAA
43799027 TCCCGCTAAT
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
6 5 0.11
7 33 0.75
8 6 0.14
ACGTcount: A:0.39, C:0.42, G:0.00, T:0.19
Consensus pattern (7 bp):
CCTAAAC
Found at i:43799246 original size:7 final size:7
Alignment explanation
Indices: 43799236--43799389 Score: 64
Period size: 7 Copynumber: 21.6 Consensus size: 7
43799226 ACCCTAAATT
43799236 ATAAACC
1 ATAAACC
43799243 ATAAACCC
1 ATAAA-CC
*
43799251 CT-AACC
1 ATAAACC
*
43799257 CTAAACC
1 ATAAACC
*
43799264 TTAAACCC
1 ATAAA-CC
43799272 ATAAA--
1 ATAAACC
*
43799277 TTAAACC
1 ATAAACC
*
43799284 CTAAACC
1 ATAAACC
*
43799291 ATAATTATC
1 ATAA--ACC
43799300 ACTAAACTC
1 A-TAAAC-C
*
43799309 ATAATCC
1 ATAAACC
*
43799316 AAAAACC
1 ATAAACC
*
43799323 CTAAACC
1 ATAAACC
*
43799330 ATATACC
1 ATAAACC
*
43799337 CTAAA-C
1 ATAAACC
43799343 ATTAAACC
1 A-TAAACC
* *
43799351 CTAAATC
1 ATAAACC
*
43799358 ATATACC
1 ATAAACC
*
43799365 CTAAACC
1 ATAAACC
43799372 ATAAACC
1 ATAAACC
* *
43799379 CTAAACT
1 ATAAACC
43799386 ATAA
1 ATAA
43799390 TGATAATTAA
Statistics
Matches: 107, Mismatches: 29, Indels: 22
0.68 0.18 0.14
Matches are distributed among these distances:
5 4 0.04
6 5 0.05
7 75 0.70
8 15 0.14
9 5 0.05
10 3 0.03
ACGTcount: A:0.48, C:0.31, G:0.00, T:0.21
Consensus pattern (7 bp):
ATAAACC
Found at i:43799270 original size:14 final size:14
Alignment explanation
Indices: 43799222--43799290 Score: 56
Period size: 14 Copynumber: 5.0 Consensus size: 14
43799212 CCTCTATCTT
*
43799222 TTAAACCCTAAA-T
1 TTAAACCCTAAACC
*
43799235 TATAAACCATAAACCC
1 T-TAAACCCTAAA-CC
*
43799251 CT-AACCCTAAACC
1 TTAAACCCTAAACC
43799264 TTAAACCCATAAA--
1 TTAAACCC-TAAACC
43799277 TTAAACCCTAAACC
1 TTAAACCCTAAACC
43799291 ATAATTATCA
Statistics
Matches: 44, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
12 4 0.09
13 12 0.27
14 23 0.52
15 5 0.11
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.22
Consensus pattern (14 bp):
TTAAACCCTAAACC
Found at i:43799339 original size:14 final size:14
Alignment explanation
Indices: 43799237--43799389 Score: 98
Period size: 14 Copynumber: 10.7 Consensus size: 14
43799227 CCCTAAATTA
43799237 TAAACCATAAACCCC
1 TAAACCATAAA-CCC
* *
43799252 T-AACCCTAAACCT
1 TAAACCATAAACCC
*
43799265 TAAACCCATAAA--T
1 TAAA-CCATAAACCC
* *
43799278 TAAACCCTAAACCA
1 TAAACCATAAACCC
* *
43799292 TAATTATCACTAAACTCA
1 TAA--ACCA-TAAAC-CC
* *
43799310 TAATCCAAAAACCC
1 TAAACCATAAACCC
*
43799324 TAAACCATATACCC
1 TAAACCATAAACCC
43799338 TAAA-CATTAAACCC
1 TAAACCA-TAAACCC
* *
43799352 TAAATCATATACCC
1 TAAACCATAAACCC
43799366 TAAACCATAAACCC
1 TAAACCATAAACCC
*
43799380 TAAACTATAA
1 TAAACCATAA
43799390 TGATAATTAA
Statistics
Matches: 109, Mismatches: 19, Indels: 21
0.73 0.13 0.14
Matches are distributed among these distances:
12 6 0.06
13 10 0.09
14 66 0.61
15 13 0.12
16 4 0.04
17 5 0.05
18 5 0.05
ACGTcount: A:0.48, C:0.31, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAACCATAAACCC
Found at i:43799360 original size:28 final size:28
Alignment explanation
Indices: 43799318--43799384 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
43799308 CATAATCCAA
43799318 AAACCCTAAACCATATACCCTAAA-CATT
1 AAACCCTAAACCATATACCCTAAACCA-T
*
43799346 AAACCCTAAATCATATACCCTAAACCAT
1 AAACCCTAAACCATATACCCTAAACCAT
43799374 AAACCCTAAAC
1 AAACCCTAAAC
43799385 TATAATGATA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 34 0.94
29 2 0.06
ACGTcount: A:0.48, C:0.33, G:0.00, T:0.19
Consensus pattern (28 bp):
AAACCCTAAACCATATACCCTAAACCAT
Found at i:43800022 original size:194 final size:194
Alignment explanation
Indices: 43799679--43800028 Score: 521
Period size: 194 Copynumber: 1.8 Consensus size: 194
43799669 TTTAAAAAGT
* * *
43799679 GCCGCTAATGCTCGATCTATAGCGGCGTTTTCCAAAAAGCGTCGTTAATGCAACTAAAGCTCAAC
1 GCCGCTAATGCTCGATCTATAGCAGCGTTTTCCAAAAAGCGCCGCTAATGCAACTAAAGCTCAAC
* * * *
43799744 ATAAAACGATGGCGTTGTGCTTAATTTTTTGCAGCATTTTTTGAAAAAGCGCCGCTAGTGGGTAG
66 ATAAAACAACGGCGTTGTGCTTAATTTTTTGCAGCAGTTTTTGAAAAAGCGCCGCTAATGGGTAG
43799809 ACCTATAGCGGCATTTTTAAAAAGCGCCGCCAATGCTCAGTAATAGCGGTGTTTTTCTACAAAC
131 ACCTATAGCGGCATTTTTAAAAAGCGCCGCCAATGCTCAGTAATAGCGGTGTTTTTCTACAAAC
43799873 GCCGCTAATGCTCGATCTATAGCAGCGTTTTCCAAAAAGCGCCGCTAATGTC-ACTAAAGCTCAA
1 GCCGCTAATGCTCGATCTATAGCAGCGTTTTCCAAAAAGCGCCGCTAATG-CAACTAAAGCTCAA
* * *
43799937 CATAAAACAACGGCGTTGTGC-TAACTTTTTTTGCGGC-GTTTTTGAACAAGTGCCGCTAAT-GG
65 CATAAAACAACGGCGTTGTGCTTAA--TTTTTTGCAGCAGTTTTTGAAAAAGCGCCGCTAATGGG
*
43799999 TCGACCTAT-GCGGCATTTTTTTAAAAAGCG
128 TAGACCTATAGCGGCA--TTTTTAAAAAGCG
43800029 TCGCTAAATG
Statistics
Matches: 140, Mismatches: 11, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
192 6 0.04
193 13 0.09
194 110 0.79
195 11 0.08
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (194 bp):
GCCGCTAATGCTCGATCTATAGCAGCGTTTTCCAAAAAGCGCCGCTAATGCAACTAAAGCTCAAC
ATAAAACAACGGCGTTGTGCTTAATTTTTTGCAGCAGTTTTTGAAAAAGCGCCGCTAATGGGTAG
ACCTATAGCGGCATTTTTAAAAAGCGCCGCCAATGCTCAGTAATAGCGGTGTTTTTCTACAAAC
Found at i:43801083 original size:33 final size:34
Alignment explanation
Indices: 43800988--43801084 Score: 85
Period size: 33 Copynumber: 2.9 Consensus size: 34
43800978 TTAATATTTT
* *
43800988 AATATATGAAATATAAATTTTAAATATTT-GTAAGC
1 AATATAT-AAAT-TATATTTTAAATATTTAATAAGC
* * *
43801023 AATAAATATTAATTAT-TTATAAA-ATTTAATTAG-
1 AAT--ATATAAATTATATTTTAAATATTTAATAAGC
43801056 AATATATAAATTATATTTTAAATATTTAA
1 AATATATAAATTATATTTTAAATATTTAA
43801085 ATATAACCAT
Statistics
Matches: 50, Mismatches: 7, Indels: 12
0.72 0.10 0.17
Matches are distributed among these distances:
31 10 0.20
32 6 0.12
33 13 0.26
34 9 0.18
35 5 0.10
36 3 0.06
37 4 0.08
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.44
Consensus pattern (34 bp):
AATATATAAATTATATTTTAAATATTTAATAAGC
Found at i:43804792 original size:21 final size:22
Alignment explanation
Indices: 43804749--43804794 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
43804739 TTCATATGAT
43804749 TGAATAAATAAATATTTTAATA
1 TGAATAAATAAATATTTTAATA
* * *
43804771 TGAATAATTTAAT-TTTTTATA
1 TGAATAAATAAATATTTTAATA
43804792 TGA
1 TGA
43804795 TTGTCTTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.48
Consensus pattern (22 bp):
TGAATAAATAAATATTTTAATA
Found at i:43805415 original size:4 final size:4
Alignment explanation
Indices: 43805408--43805465 Score: 71
Period size: 4 Copynumber: 13.8 Consensus size: 4
43805398 TTTAAGGTAA
* *
43805408 AATT AATT AGTTT AATT AACTT AATTT AATT AATT AACT AATT AATT AATT
1 AATT AATT A-ATT AATT AA-TT AA-TT AATT AATT AATT AATT AATT AATT
43805459 AATT AAT
1 AATT AAT
43805466 ATTTTTGGGT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
4 36 0.77
5 11 0.23
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:43805930 original size:14 final size:15
Alignment explanation
Indices: 43805881--43805930 Score: 50
Period size: 14 Copynumber: 3.3 Consensus size: 15
43805871 TGGAAAAATA
*
43805881 AATTTTAATTTACTTAT
1 AATTTT-ATTT-CATAT
43805898 AATTTTATTTCAT-T
1 AATTTTATTTCATAT
*
43805912 TATTTT-TTTCATAT
1 AATTTTATTTCATAT
43805926 AATTT
1 AATTT
43805931 GTAACGCCCC
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
13 6 0.21
14 11 0.38
15 2 0.07
16 4 0.14
17 6 0.21
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (15 bp):
AATTTTATTTCATAT
Found at i:43806347 original size:23 final size:23
Alignment explanation
Indices: 43806321--43806365 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
43806311 TTCCTTCCTT
* *
43806321 TTTTCGTTCTTTTTTCTTTTTTC
1 TTTTCCTTCCTTTTTCTTTTTTC
43806344 TTTTCCTTCCTTTTTCTTTTTT
1 TTTTCCTTCCTTTTTCTTTTTT
43806366 TTCTTTTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78
Consensus pattern (23 bp):
TTTTCCTTCCTTTTTCTTTTTTC
Found at i:43806373 original size:7 final size:7
Alignment explanation
Indices: 43806327--43806365 Score: 51
Period size: 7 Copynumber: 5.3 Consensus size: 7
43806317 CCTTTTTTCG
43806327 TTCTTTT
1 TTCTTTT
43806334 TTCTTTT
1 TTCTTTT
43806341 TTCTTTT
1 TTCTTTT
*
43806348 CCTTCCTTT
1 --TTCTTTT
43806357 TTCTTTT
1 TTCTTTT
43806364 TT
1 TT
43806366 TTCTTTTTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 22 0.79
9 6 0.21
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (7 bp):
TTCTTTT
Found at i:43807052 original size:63 final size:62
Alignment explanation
Indices: 43806924--43807120 Score: 186
Period size: 63 Copynumber: 3.1 Consensus size: 62
43806914 TGTGTTAGAT
* * *
43806924 CGTGTGACAGGCCATGTGACTCATTGTTTATCATTAAGGACCACACGGACCAGAGACACAGG
1 CGTGTGTCAGGCCATGTGACTCACTGTTTATCATTAAAGACCACACGGACCAGAGACACAGG
* *
43806986 CGTGTGTCTAGGCCATGTGACTCACTGTTTGTCATTAAAGACCACACAGG-CCAGAGACA-TGAG
1 CGTGTGTC-AGGCCATGTGACTCACTGTTTATCATTAAAGACCACAC-GGACCAGAGACACAG-G
* * * * * * * * *
43807049 CGTGTGTCCAGGTCGTGTGACCCACTATTTA-CGATTTAGGACTACACGGA-CATATGACACGGG
1 CGTGTGT-CAGGCCATGTGACTCACTGTTTATC-ATTAAAGACCACACGGACCAGA-GACACAGG
43807112 CGTGTGTCA
1 CGTGTGTCA
43807121 AGCCGTGTAA
Statistics
Matches: 112, Mismatches: 15, Indels: 16
0.78 0.10 0.11
Matches are distributed among these distances:
62 16 0.14
63 92 0.82
64 4 0.04
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (62 bp):
CGTGTGTCAGGCCATGTGACTCACTGTTTATCATTAAAGACCACACGGACCAGAGACACAGG
Found at i:43832063 original size:9 final size:9
Alignment explanation
Indices: 43832049--43832083 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
43832039 TTATTTATTC
*
43832049 AATTAATTT
1 AATTAATTA
43832058 AATTAATTA
1 AATTAATTA
*
43832067 AATTAACTA
1 AATTAATTA
43832076 AATTAATT
1 AATTAATT
43832084 TCTCAATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (9 bp):
AATTAATTA
Found at i:43840599 original size:102 final size:102
Alignment explanation
Indices: 43840423--43840966 Score: 926
Period size: 102 Copynumber: 5.3 Consensus size: 102
43840413 GAGTATATTG
*
43840423 AATTTAAAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCTACTC
1 AATTTGAAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCTACTC
* *
43840488 ATTGGTGGTTGTTAAGTGCTGATTCTACCGTATTTTA
66 ATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTTA
43840525 AATTTGAAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCTACTC
1 AATTTGAAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCTACTC
* *
43840590 ATTGGTGGTTGTTAAGTGCTGATTCTACCGTATTTTA
66 ATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTTA
*
43840627 AATTTGAAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGTTGATTCCCCTACTC
1 AATTTGAAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCTACTC
43840692 ATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTTA
66 ATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTTA
*
43840729 AATTTGAAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGTTGATTCCCCTACTC
1 AATTTGAAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCTACTC
43840794 ATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTTA
66 ATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTTA
* * * *
43840831 AATTTGAAGGGGGTTGCTAAGTGCTGATTCTCCCAAGGGGTTGGTAAGTGCTGATTCCCCGAATC
1 AATTTGAAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCTACTC
* * *
43840896 ATTGGTGGTTGCTAAGTGCTAATTCCACCATATCTTTG
66 ATTGGTGGTTGCTAAGTGCTGATTCCACCGTAT-TTTA
* * *
43840934 AATCTGAAAGGGGTTGCTAAGTGTTGATTCCCC
1 AATTTGAAGGGGGTTGCTAAGTGCTGATTCCCC
43840967 GAATCACTGG
Statistics
Matches: 425, Mismatches: 16, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
102 393 0.92
103 32 0.08
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.34
Consensus pattern (102 bp):
AATTTGAAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCTACTC
ATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTTA
Found at i:43840912 original size:33 final size:33
Alignment explanation
Indices: 43840869--43840989 Score: 91
Period size: 33 Copynumber: 3.4 Consensus size: 33
43840859 TCTCCCAAGG
*
43840869 GGTTGGTAAGTGCTGATTCCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
* *
43840902 GGTTGCTAAGTGCTAATTCCACC-ATATCTTTGAATCTGAAAGG
1 GGTTGCTAAGTGCTGATTCC-CCGA-ATC-----AT-TG---GT
* *
43840945 GGTTGCTAAGTGTTGATTCCCCGAATCACTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
43840978 GGTTGCTAAGTG
1 GGTTGCTAAGTG
43840990 TTGAATCTAC
Statistics
Matches: 69, Mismatches: 7, Indels: 24
0.69 0.07 0.24
Matches are distributed among these distances:
33 32 0.46
34 5 0.07
36 2 0.03
37 1 0.01
39 2 0.03
40 2 0.03
42 5 0.07
43 20 0.29
ACGTcount: A:0.21, C:0.18, G:0.27, T:0.33
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
Found at i:43852114 original size:45 final size:45
Alignment explanation
Indices: 43852065--43852283 Score: 366
Period size: 45 Copynumber: 4.9 Consensus size: 45
43852055 TCGGCCATGG
* * * *
43852065 TGCTTCCTCAATTTGTTCCTTAAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
* *
43852110 TGCTTCCTTAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
43852155 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
*
43852200 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
*
43852245 TACTTCCTCAAATTCTTCCATGAATTATGCATGATGTTG
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTG
43852284 TCCACCTCTT
Statistics
Matches: 164, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 164 1.00
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (45 bp):
TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
Found at i:43854945 original size:14 final size:15
Alignment explanation
Indices: 43854921--43854955 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
43854911 TACTTTAATC
43854921 ATGGATTAGTATTT-T
1 ATGG-TTAGTATTTAT
43854936 ATGGTTAGTATTTAT
1 ATGGTTAGTATTTAT
43854951 ATGGT
1 ATGGT
43854956 AATGTATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (15 bp):
ATGGTTAGTATTTAT
Found at i:43855370 original size:93 final size:93
Alignment explanation
Indices: 43855209--43855718 Score: 849
Period size: 93 Copynumber: 5.5 Consensus size: 93
43855199 GAGTAAATGA
* * *
43855209 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTATATATGTATATGCTGTCAATT
1 ATGTATATGCTGTCAATTTTTGACGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAATT
43855274 TTTGATGTATAAGGCAGTCCAATTATAT
66 TTTGATGTATAAGGCAGTCCAATTATAT
* * *
43855302 ATGTATATGCTGTCAATTTTTGACGTATAAATGTAGTCCAATTACATATGTATATGCTGTCAAAT
1 ATGTATATGCTGTCAATTTTTGACGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAATT
* * *
43855367 TTTGATGTACAAATGCAGTCCAAATATAT
66 TTTGATGTA-TAAGGCAGTCCAATTATAT
* *
43855396 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTGTTAATT
1 ATGTATATGCTGTCAATTTTTGACGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAATT
43855461 TTTGATGTATAAGGCAGTCCAATTATAT
66 TTTGATGTATAAGGCAGTCCAATTATAT
*
43855489 ATGTATATGCTGTCAATTTTTGACGTATAAATGCAGTCCAATTATATATGTATATGCTGTTAATT
1 ATGTATATGCTGTCAATTTTTGACGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAATT
43855554 TTTGATGTATAAGGCAGTCCAATTATAT
66 TTTGATGTATAAGGCAGTCCAATTATAT
*
43855582 ATGTATATGCTGTCAATTTTTGACGTATAAATGCAGTCCAATTATATATGTATATACTGTCAATT
1 ATGTATATGCTGTCAATTTTTGACGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAATT
*
43855647 TTTGATGTATAAATGCAGTCCAATTATAT
66 TTTGATGTAT-AAGGCAGTCCAATTATAT
* * *
43855676 ATGTATATGCTGTCAATTTTTTATGTATAAATCCAGTCCAATT
1 ATGTATATGCTGTCAATTTTTGACGTATAAATGCAGTCCAATT
43855719 TTGTAAATAT
Statistics
Matches: 391, Mismatches: 24, Indels: 3
0.94 0.06 0.01
Matches are distributed among these distances:
93 249 0.64
94 142 0.36
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (93 bp):
ATGTATATGCTGTCAATTTTTGACGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAATT
TTTGATGTATAAGGCAGTCCAATTATAT
Found at i:43855399 original size:25 final size:24
Alignment explanation
Indices: 43855231--43855447 Score: 62
Period size: 23 Copynumber: 9.2 Consensus size: 24
43855221 TCAAATTTTG
*
43855231 ATGTACAAATGCAGTCCAATTATAT
1 ATGTA-AAATGCAGTCCAAATATAT
* * * *
43855256 ATGT-ATATGCTGT-C-AATTTTT
1 ATGTAAAATGCAGTCCAAATATAT
* * *
43855277 GATGTATAAGGCAGTCCAATTATAT
1 -ATGTAAAATGCAGTCCAAATATAT
* * * *
43855302 ATGT-ATATGCTGT-C-AATTTTT
1 ATGTAAAATGCAGTCCAAATATAT
* * * *
43855323 GACGTATAAATGTAGTCCAATTACAT
1 -ATGTA-AAATGCAGTCCAAATATAT
* * *
43855349 ATGT-ATATGCTGT-CAAAT-TTT
1 ATGTAAAATGCAGTCCAAATATAT
43855370 GATGTACAAATGCAGTCCAAATATAT
1 -ATGTA-AAATGCAGTCCAAATATAT
* * * *
43855396 ATGT-ATATGCTGT-C-AATTTTT
1 ATGTAAAATGCAGTCCAAATATAT
*
43855417 GATGTATAAATGCAGTCCAATTATAT
1 -ATGTA-AAATGCAGTCCAAATATAT
43855443 ATGTA
1 ATGTA
43855448 TATGCTGTTA
Statistics
Matches: 127, Mismatches: 46, Indels: 38
0.60 0.22 0.18
Matches are distributed among these distances:
21 14 0.11
22 22 0.17
23 30 0.24
24 25 0.20
25 27 0.21
26 9 0.07
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.39
Consensus pattern (24 bp):
ATGTAAAATGCAGTCCAAATATAT
Found at i:43855742 original size:47 final size:47
Alignment explanation
Indices: 43855209--43855718 Score: 837
Period size: 47 Copynumber: 10.9 Consensus size: 47
43855199 GAGTAAATGA
* *
43855209 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTATAT
1 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATTATAT
*
43855256 ATGTATATGCTGTCAATTTTTGATGTAT-AAGGCAGTCCAATTATAT
1 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATTATAT
* * *
43855302 ATGTATATGCTGTCAATTTTTGACGTATAAATGTAGTCCAATTACAT
1 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATTATAT
* * *
43855349 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAAATATAT
1 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATTATAT
43855396 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATTATAT
1 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATTATAT
* *
43855443 ATGTATATGCTGTTAATTTTTGATGTAT-AAGGCAGTCCAATTATAT
1 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATTATAT
*
43855489 ATGTATATGCTGTCAATTTTTGACGTATAAATGCAGTCCAATTATAT
1 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATTATAT
* *
43855536 ATGTATATGCTGTTAATTTTTGATGTAT-AAGGCAGTCCAATTATAT
1 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATTATAT
*
43855582 ATGTATATGCTGTCAATTTTTGACGTATAAATGCAGTCCAATTATAT
1 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATTATAT
*
43855629 ATGTATATACTGTCAATTTTTGATGTATAAATGCAGTCCAATTATAT
1 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATTATAT
* *
43855676 ATGTATATGCTGTCAATTTTTTATGTATAAATCCAGTCCAATT
1 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATT
43855719 TTGTAAATAT
Statistics
Matches: 428, Mismatches: 32, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
46 130 0.30
47 298 0.70
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (47 bp):
ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATTATAT
Found at i:43855755 original size:140 final size:140
Alignment explanation
Indices: 43855209--43855705 Score: 843
Period size: 140 Copynumber: 3.5 Consensus size: 140
43855199 GAGTAAATGA
43855209 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTATATATGTATATGCTGTCAATT
1 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTATATATGTATATGCTGTCAATT
*
43855274 TTTGATGTATAAGGCAGTCCAATTATATATGTATATGCTGTCAATTTTTGACGTATAAATGTAGT
66 TTTGATGTATAAGGCAGTCCAATTATATATGTATATGCTGTCAATTTTTGACGTATAAATGCAGT
*
43855339 CCAATTACAT
131 CCAATTATAT
*
43855349 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAAATATATATGTATATGCTGTCAATT
1 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTATATATGTATATGCTGTCAATT
* * * *
43855414 TTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTGTTAATTTTTGATGTAT-AAGGCAG
66 TTTGATGTAT-AAGGCAGTCCAATTATATATGTATATGCTGTCAATTTTTGACGTATAAATGCAG
43855478 TCCAATTATAT
130 TCCAATTATAT
* * * *
43855489 ATGTATATGCTGTCAATTTTTGACGTATAAATGCAGTCCAATTATATATGTATATGCTGTTAATT
1 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTATATATGTATATGCTGTCAATT
43855554 TTTGATGTATAAGGCAGTCCAATTATATATGTATATGCTGTCAATTTTTGACGTATAAATGCAGT
66 TTTGATGTATAAGGCAGTCCAATTATATATGTATATGCTGTCAATTTTTGACGTATAAATGCAGT
43855619 CCAATTATAT
131 CCAATTATAT
* * *
43855629 ATGTATATACTGTCAATTTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAATT
1 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTATATATGTATATGCTGTCAATT
*
43855694 TTTTATGTATAA
66 TTTGATGTATAA
43855706 ATCCAGTCCA
Statistics
Matches: 335, Mismatches: 20, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
139 43 0.13
140 249 0.74
141 43 0.13
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.41
Consensus pattern (140 bp):
ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTATATATGTATATGCTGTCAATT
TTTGATGTATAAGGCAGTCCAATTATATATGTATATGCTGTCAATTTTTGACGTATAAATGCAGT
CCAATTATAT
Found at i:43858003 original size:26 final size:27
Alignment explanation
Indices: 43857885--43858105 Score: 175
Period size: 27 Copynumber: 8.2 Consensus size: 27
43857875 GGTATAACAG
* ** * *
43857885 TCATTTTATCCTACGAGGGTATTTCGG
1 TCATTTTACCCTATAAGGGTATTACGA
*
43857912 TCATTTTACCCT-TCGAGGGTAATT-CGA
1 TCATTTTACCCTAT-AAGGGT-ATTACGA
* * *
43857939 TAATTTTTACCCT-TCGAGGGTATTACAA
1 TCA-TTTTACCCTAT-AAGGGTATTACGA
* *
43857967 TCATTTTACCCTATAAGGGT-TTTCGG
1 TCATTTTACCCTATAAGGGTATTACGA
* * *
43857993 TCATTTTACCCTACAGGGGTATTACGG
1 TCATTTTACCCTATAAGGGTATTACGA
* *
43858020 TCATTTTACCTTATGAGGGTATTACGA
1 TCATTTTACCCTATAAGGGTATTACGA
** *
43858047 TCATTTTTTCCTAT-AGGGTATTTCGA
1 TCATTTTACCCTATAAGGGTATTACGA
*
43858073 TCATTTTACCCTACAAGGGTATTAC-A
1 TCATTTTACCCTATAAGGGTATTACGA
43858099 GTCATTT
1 -TCATTT
43858106 ATAACCTTTC
Statistics
Matches: 160, Mismatches: 26, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
26 44 0.28
27 91 0.57
28 25 0.16
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (27 bp):
TCATTTTACCCTATAAGGGTATTACGA
Found at i:43858017 original size:53 final size:54
Alignment explanation
Indices: 43857885--43858105 Score: 186
Period size: 53 Copynumber: 4.1 Consensus size: 54
43857875 GGTATAACAG
* * * *
43857885 TCATTTTATCCTAC-GAGGGTATTTCGGTCATTTTACCCT-TCGAGGGTAATT-CGA
1 TCATTTTACCCTACAG-GGGTATTACGATCATTTTACCCTAT-AAGGGT-ATTACGA
* * * * *
43857939 TAATTTTTACCCTTC-GAGGGTATTACAATCATTTTACCCTATAAGGGT-TTTCGG
1 TCA-TTTTACCCTACAG-GGGTATTACGATCATTTTACCCTATAAGGGTATTACGA
* * *
43857993 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCTTATGAGGGTATTACGA
1 TCATTTTACCCTACAGGGGTATTACGATCATTTTACCCTATAAGGGTATTACGA
** * * *
43858047 TCATTTTTTCCTATA-GGGTATTTCGATCATTTTACCCTACAAGGGTATTAC-A
1 TCATTTTACCCTACAGGGGTATTACGATCATTTTACCCTATAAGGGTATTACGA
43858099 GTCATTT
1 -TCATTT
43858106 ATAACCTTTC
Statistics
Matches: 137, Mismatches: 24, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
52 1 0.01
53 76 0.55
54 23 0.17
55 36 0.26
56 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (54 bp):
TCATTTTACCCTACAGGGGTATTACGATCATTTTACCCTATAAGGGTATTACGA
Found at i:43858060 original size:80 final size:80
Alignment explanation
Indices: 43857874--43858105 Score: 265
Period size: 80 Copynumber: 2.9 Consensus size: 80
43857864 CACCTCCTAG
* * * *
43857874 GGGTATAACAGTCATTTTATCCTACGAGGGTATTTCGGTCATTTTACCCTTC-GAGGGTAATT-C
1 GGGTATTACAATCATTTTATCCTA-TAGGGTATTTCGGTCATTTTACCCTACAG-GGGT-ATTAC
* *
43857937 GATAATTTTTACCCTTCGA
63 GGTCA-TTTTACCCTTCGA
*
43857956 GGGTATTACAATCATTTTACCCTATAAGGGT-TTTCGGTCATTTTACCCTACAGGGGTATTACGG
1 GGGTATTACAATCATTTTATCCTAT-AGGGTATTTCGGTCATTTTACCCTACAGGGGTATTACGG
*
43858020 TCATTTTA-CCTTATGA
65 TCATTTTACCCTT-CGA
* * * * *
43858036 GGGTATTACGATCATTTTTTCCTATAGGGTATTTCGATCATTTTACCCTACAAGGGTATTACAGT
1 GGGTATTACAATCATTTTATCCTATAGGGTATTTCGGTCATTTTACCCTACAGGGGTATTACGGT
43858101 CATTT
66 CATTT
43858106 ATAACCTTTC
Statistics
Matches: 131, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
79 9 0.07
80 68 0.52
81 27 0.21
82 27 0.21
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.39
Consensus pattern (80 bp):
GGGTATTACAATCATTTTATCCTATAGGGTATTTCGGTCATTTTACCCTACAGGGGTATTACGGT
CATTTTACCCTTCGA
Found at i:43864692 original size:161 final size:161
Alignment explanation
Indices: 43864422--43864748 Score: 523
Period size: 161 Copynumber: 2.0 Consensus size: 161
43864412 TGTTGTGCTG
* * *
43864422 AAGTAGGAATTATTTTTCCTACTCCCTGTTTGTGTCGCCCATGTTGTTGGTAATTGGGTTAAATT
1 AAGTGGGAATTATTTTTCCTACTCCCTGTTTGTGCCGCCCATGTTGATGGTAATTGGGTTAAATT
*
43864487 CAAATTCTAATTTGTTAGATAAGATTAGTGGTGAAATCTTGTTAGTTGAGATAATAGTGTTTTTT
66 CAAATTCTAATTTGTTAGATAAGATTAGTGGTGAAATCTTGTTAGTTAAGATAATAGTGTTTTTT
* *
43864552 TTAAATTGAGGAATAGCTCTTA-AATTCTTTC
131 TAAAATTGAGGAATAGCTCCTACAA-TCTTTC
*
43864583 AAGTGGGAATTATTTTTCCTACTCCCTGTTTGTGCCGCCTATGTTGATGGTAATTGGGTTAAATT
1 AAGTGGGAATTATTTTTCCTACTCCCTGTTTGTGCCGCCCATGTTGATGGTAATTGGGTTAAATT
* * *
43864648 CAAATTTTGATTTGTTAGAT-AGAATTAGTGGTTAAATCTTGTTAGTTAAGATAATAGTGTTTTT
66 CAAATTCTAATTTGTTAGATAAG-ATTAGTGGTGAAATCTTGTTAGTTAAGATAATAGTGTTTTT
*
43864712 TTAAAATTGAGGAATATCTCCTACAATCTTTC
130 TTAAAATTGAGGAATAGCTCCTACAATCTTTC
43864744 AAGTG
1 AAGTG
43864749 ACCATCACAC
Statistics
Matches: 153, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
160 2 0.01
161 149 0.97
162 2 0.01
ACGTcount: A:0.27, C:0.11, G:0.19, T:0.43
Consensus pattern (161 bp):
AAGTGGGAATTATTTTTCCTACTCCCTGTTTGTGCCGCCCATGTTGATGGTAATTGGGTTAAATT
CAAATTCTAATTTGTTAGATAAGATTAGTGGTGAAATCTTGTTAGTTAAGATAATAGTGTTTTTT
TAAAATTGAGGAATAGCTCCTACAATCTTTC
Found at i:43870258 original size:48 final size:48
Alignment explanation
Indices: 43870187--43870366 Score: 173
Period size: 48 Copynumber: 3.8 Consensus size: 48
43870177 ANATTTGTCG
* * * * *
43870187 TGTAGGTTTAACCTTAATGGGTAACCAAACACTATTGTTCATTAATCA
1 TGTAGGTTTAACCCTAACGGGTAACCAGACACTATTATTCATTATTCA
* ** ** * *
43870235 TGTAGGTTTAACCCTAATGGGTAATTAGGTACTACTATTCATTATTCG
1 TGTAGGTTTAACCCTAACGGGTAACCAGACACTATTATTCATTATTCA
* * * * *
43870283 TATAGGTTTAGCCCTAACGGGTAACTAGGCACTATTAATT-TTTATTCA
1 TGTAGGTTTAACCCTAACGGGTAACCAGACACTATT-ATTCATTATTCA
* *
43870331 TGTAGGTTTAACCCAAACAGGTAACCAGACACTATT
1 TGTAGGTTTAACCCTAACGGGTAACCAGACACTATT
43870367 TCTTTCACCT
Statistics
Matches: 107, Mismatches: 24, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
48 104 0.97
49 3 0.03
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (48 bp):
TGTAGGTTTAACCCTAACGGGTAACCAGACACTATTATTCATTATTCA
Found at i:43879110 original size:47 final size:47
Alignment explanation
Indices: 43879041--43879690 Score: 937
Period size: 47 Copynumber: 13.5 Consensus size: 47
43879031 GTGTGTATAC
*
43879041 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
43879088 GTGAAAGTGTATGTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
43879135 GCGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
43879184 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
43879231 GTGAAAGTGTATGTATGTGATAAGGCCTAATGATAAGGCCTAATGGCCGATG--T
1 GTGAAAGTGTATATATGTGATAAGGCCT-A--AT--GGCC-GAT-G-TGATGAAT
* * * * * *
43879284 GATGAATGTGAAAGTGTATATATG-TGATAAGGCCTAATGGCCGATGTGATGAAT
1 G-TGAAAGT----GTATATATGTGAT-A-AGGCCT-AATGGCCGATGTGATGAAT
43879338 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
43879385 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
43879432 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
43879479 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
43879526 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
43879573 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * *
43879620 GTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
43879667 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
43879691 TCCCGAAGGG
Statistics
Matches: 549, Mismatches: 34, Indels: 40
0.88 0.05 0.06
Matches are distributed among these distances:
47 434 0.79
48 4 0.01
49 54 0.10
50 3 0.01
52 8 0.01
53 11 0.02
54 11 0.02
55 8 0.01
57 3 0.01
58 9 0.02
59 4 0.01
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:43879266 original size:13 final size:13
Alignment explanation
Indices: 43879248--43879275 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
43879238 TGTATGTATG
43879248 TGATAAGGCCTAA
1 TGATAAGGCCTAA
43879261 TGATAAGGCCTAA
1 TGATAAGGCCTAA
43879274 TG
1 TG
43879276 GCCGATGTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (13 bp):
TGATAAGGCCTAA
Found at i:43879273 original size:60 final size:60
Alignment explanation
Indices: 43879201--43879322 Score: 235
Period size: 60 Copynumber: 2.0 Consensus size: 60
43879191 TGTATATATG
*
43879201 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCTAA
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
43879261 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
43879321 TG
1 TG
43879323 GCCGATGTGA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.29
Consensus pattern (60 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
Found at i:43881830 original size:15 final size:16
Alignment explanation
Indices: 43881796--43881830 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
43881786 GCAATATGTT
43881796 AAACACAAGATGAACAC
1 AAACACAAGATG-ACAC
43881813 AAACACAAGATG-CAC
1 AAACACAAGATGACAC
43881828 AAA
1 AAA
43881831 ATCACAGTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.33
17 12 0.67
ACGTcount: A:0.60, C:0.23, G:0.11, T:0.06
Consensus pattern (16 bp):
AAACACAAGATGACAC
Found at i:43882167 original size:17 final size:17
Alignment explanation
Indices: 43882145--43882179 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
43882135 AGTGTTGAAA
43882145 GATTGATAATCTATCTT
1 GATTGATAATCTATCTT
43882162 GATTGATAATCTATCTT
1 GATTGATAATCTATCTT
43882179 G
1 G
43882180 TAAAAATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.14, T:0.46
Consensus pattern (17 bp):
GATTGATAATCTATCTT
Found at i:43882371 original size:26 final size:26
Alignment explanation
Indices: 43882331--43882381 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
43882321 CAGTGGTTGG
43882331 TTTGACCAACCGATTCTATTAACTGA
1 TTTGACCAACCGATTCTATTAACTGA
**
43882357 TTTGACCAATTGATTCTATTAACTG
1 TTTGACCAACCGATTCTATTAACTG
43882382 TTTATTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (26 bp):
TTTGACCAACCGATTCTATTAACTGA
Found at i:43882915 original size:24 final size:23
Alignment explanation
Indices: 43882883--43882934 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 23
43882873 GCAATGTTGA
*
43882883 TTTTTGTAGATTCACGGTGGAGT
1 TTTTTGTAGATTCACGGTGAAGT
*
43882906 TTTTCTGTAGATTCATGGTGAAGT
1 TTTT-TGTAGATTCACGGTGAAGT
43882930 TTTTT
1 TTTTT
43882935 TTGGGGGGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 5 0.19
24 21 0.81
ACGTcount: A:0.17, C:0.08, G:0.25, T:0.50
Consensus pattern (23 bp):
TTTTTGTAGATTCACGGTGAAGT
Found at i:43883979 original size:43 final size:43
Alignment explanation
Indices: 43883932--43884086 Score: 208
Period size: 43 Copynumber: 3.6 Consensus size: 43
43883922 AGGTCATGTT
* *
43883932 CTTTAGCAGTGCTTTTTTCACAAACGCTGCTAAAGAACATGAC
1 CTTTAGCGGTGCTTTTTTCACAAACGCTACTAAAGAACATGAC
*
43883975 CTTTAGC--TGCACTTTTTCACAAACGCTACTAAAGAACATGAC
1 CTTTAGCGGTGC-TTTTTTCACAAACGCTACTAAAGAACATGAC
* *
43884017 CTTTAGCGGTGCTTTTATCACAAACGCCACTAAA-AATCATGAC
1 CTTTAGCGGTGCTTTTTTCACAAACGCTACTAAAGAA-CATGAC
* *
43884060 CTTTAGCGGCGCTTTTTTTACAAACGC
1 CTTTAGCGGTGCTTTTTTCACAAACGC
43884087 CGCAAAAAGT
Statistics
Matches: 100, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
41 3 0.03
42 38 0.38
43 56 0.56
44 3 0.03
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (43 bp):
CTTTAGCGGTGCTTTTTTCACAAACGCTACTAAAGAACATGAC
Found at i:43884007 original size:42 final size:42
Alignment explanation
Indices: 43883945--43884086 Score: 196
Period size: 42 Copynumber: 3.3 Consensus size: 42
43883935 TAGCAGTGCT
* * *
43883945 TTTTTCACAAACGCTGCTAAAGAACATGACCTTTAGCTGCAC
1 TTTTTCACAAACGCTACTAAAGAACATGACCTTTAGCGGCGC
*
43883987 TTTTTCACAAACGCTACTAAAGAACATGACCTTTAGCGGTGC
1 TTTTTCACAAACGCTACTAAAGAACATGACCTTTAGCGGCGC
*
43884029 TTTTATCACAAACGCCACTAAA-AATCATGACCTTTAGCGGCGC
1 TTTT-TCACAAACGCTACTAAAGAA-CATGACCTTTAGCGGCGC
*
43884072 TTTTTTTACAAACGC
1 -TTTTTCACAAACGC
43884087 CGCAAAAAGT
Statistics
Matches: 90, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
42 44 0.49
43 42 0.47
44 4 0.04
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (42 bp):
TTTTTCACAAACGCTACTAAAGAACATGACCTTTAGCGGCGC
Found at i:43887908 original size:64 final size:64
Alignment explanation
Indices: 43887828--43887964 Score: 249
Period size: 64 Copynumber: 2.2 Consensus size: 64
43887818 ATTGGATTCG
*
43887828 TATTC-AATAGATTAGAATATTTGTCTTGTCAATTATAATTTTTAAATCAATAATTGTTTAATT
1 TATTCTAATAGATTAGAATATTTGTCTTGTCAATTAGAATTTTTAAATCAATAATTGTTTAATT
*
43887891 TATTCTAATAGCTTAGAATATTTGTCTTGTCAATTAGAATTTTTAAATCAATAATTGTTTAATT
1 TATTCTAATAGATTAGAATATTTGTCTTGTCAATTAGAATTTTTAAATCAATAATTGTTTAATT
43887955 TATTCTAATA
1 TATTCTAATA
43887965 CTAGTGATGA
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
63 5 0.07
64 66 0.93
ACGTcount: A:0.36, C:0.07, G:0.08, T:0.49
Consensus pattern (64 bp):
TATTCTAATAGATTAGAATATTTGTCTTGTCAATTAGAATTTTTAAATCAATAATTGTTTAATT
Found at i:43889585 original size:20 final size:22
Alignment explanation
Indices: 43889562--43889602 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
43889552 TCTTTGTTTG
43889562 CATTTTTTT-CCTT-TTCCTTT
1 CATTTTTTTGCCTTATTCCTTT
43889582 CATTTTTTTGCCTTATTCCTT
1 CATTTTTTTGCCTTATTCCTT
43889603 GGTGGTAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.47
21 4 0.21
22 6 0.32
ACGTcount: A:0.07, C:0.24, G:0.02, T:0.66
Consensus pattern (22 bp):
CATTTTTTTGCCTTATTCCTTT
Found at i:43894437 original size:33 final size:33
Alignment explanation
Indices: 43894400--43894467 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
43894390 CTATGGGGTT
*
43894400 ATTTCGGTCATTTTACCCTATGGGGGTATTTCG
1 ATTTCGATCATTTTACCCTATGGGGGTATTTCG
43894433 ATTTCGATCATTTTACCCTATGGGGGTATTTCG
1 ATTTCGATCATTTTACCCTATGGGGGTATTTCG
43894466 AT
1 AT
43894468 CATTTTACCT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.43
Consensus pattern (33 bp):
ATTTCGATCATTTTACCCTATGGGGGTATTTCG
Found at i:43894601 original size:27 final size:27
Alignment explanation
Indices: 43894298--43894602 Score: 360
Period size: 27 Copynumber: 11.1 Consensus size: 27
43894288 GTGTATAATA
*
43894298 GTCATTTTACCCTATGGGAGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
43894325 GTCATTTTACTCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * ** *
43894352 ATCGTTCTACCCTATGGAAGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
43894379 GTCATTCTACCCTATGGGGTTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
43894406 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
43894433 ATTTCGATCATTTTACCCTATGGGGGTATTTCG
1 -----G-TCATTTTACCCTATGGGGGTATTTCG
* *
43894466 ATCATTTTACCTTATGGGGGT-TATTCG
1 GTCATTTTACCCTATGGGGGTAT-TTCG
* * * **
43894493 TTCATTCTACCCTATGAGGGTATTTTA
1 GTCATTTTACCCTATGGGGGTATTTCG
*
43894520 GTCATTCTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
43894547 ATCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
43894574 GTCATTCTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
43894601 GT
1 GT
43894603 TATAATAGTG
Statistics
Matches: 237, Mismatches: 33, Indels: 16
0.83 0.12 0.06
Matches are distributed among these distances:
26 1 0.00
27 208 0.88
28 1 0.00
32 1 0.00
33 26 0.11
ACGTcount: A:0.17, C:0.19, G:0.23, T:0.41
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:43904228 original size:10 final size:10
Alignment explanation
Indices: 43904195--43904324 Score: 76
Period size: 10 Copynumber: 12.9 Consensus size: 10
43904185 CTTTTTTCCC
43904195 TTTTTATTTA
1 TTTTTATTTA
43904205 --TTTA-TTA
1 TTTTTATTTA
*
43904212 TTCTTATTTA
1 TTTTTATTTA
43904222 TTTTTATTATA
1 TTTTTATT-TA
43904233 TTTATTATCCTT-
1 TTT-TTAT--TTA
*
43904245 TGTTTT-CTTA
1 T-TTTTATTTA
43904255 TTTTTATTT-
1 TTTTTATTTA
43904264 TTATTT-TTTA
1 TT-TTTATTTA
* *
43904274 TTATTATTATG
1 TTTTTATT-TA
43904285 TTTATTATTTA
1 TTT-TTATTTA
*
43904296 TTATTATTTA
1 TTTTTATTTA
*
43904306 TTATTATTTA
1 TTTTTATTTA
*
43904316 TTATTATTT
1 TTTTTATTT
43904325 TAGCTATCGT
Statistics
Matches: 96, Mismatches: 9, Indels: 30
0.71 0.07 0.22
Matches are distributed among these distances:
7 3 0.03
8 4 0.04
9 16 0.17
10 46 0.48
11 11 0.11
12 12 0.12
13 3 0.03
14 1 0.01
ACGTcount: A:0.22, C:0.03, G:0.02, T:0.73
Consensus pattern (10 bp):
TTTTTATTTA
Found at i:43904279 original size:3 final size:3
Alignment explanation
Indices: 43904252--43904323 Score: 69
Period size: 3 Copynumber: 23.7 Consensus size: 3
43904242 CTTTGTTTTC
* *
43904252 TTA TTT TTA TTT TTA TT- TT- TTA TTA TTA TTA TGT- TTA TTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA -TTA
43904296 TTA TTA TTTA TTA TTA TTTA TTA TTA TT
1 TTA TTA -TTA TTA TTA -TTA TTA TTA TT
43904324 TTAGCTATCG
Statistics
Matches: 59, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
2 5 0.08
3 44 0.75
4 10 0.17
ACGTcount: A:0.25, C:0.00, G:0.01, T:0.74
Consensus pattern (3 bp):
TTA
Found at i:43904319 original size:13 final size:13
Alignment explanation
Indices: 43904202--43904323 Score: 90
Period size: 13 Copynumber: 9.2 Consensus size: 13
43904192 CCCTTTTTAT
*
43904202 TTATTTATTATTC
1 TTATTTATTATTA
*
43904215 TTATTTATTTTTA
1 TTATTTATTATTA
*
43904228 TTATAT-TTATTA
1 TTATTTATTATTA
* *
43904240 TCCT-TTGTTTTCTTA
1 T--TATT-TATTATTA
*
43904255 TT-TTTATTTTTA
1 TTATTTATTATTA
*
43904267 TTTTTTATTATTA
1 TTATTTATTATTA
43904280 TTATGTTTATTATTTA
1 TTA--TTTATTA-TTA
43904296 TTA-TTATTTATTA
1 TTATTTA-TTATTA
43904309 TTATTTATTATTA
1 TTATTTATTATTA
43904322 TT
1 TT
43904324 TTAGCTATCG
Statistics
Matches: 89, Mismatches: 10, Indels: 20
0.75 0.08 0.17
Matches are distributed among these distances:
12 14 0.16
13 48 0.54
14 8 0.09
15 13 0.15
16 6 0.07
ACGTcount: A:0.23, C:0.03, G:0.02, T:0.72
Consensus pattern (13 bp):
TTATTTATTATTA
Found at i:43904405 original size:3 final size:3
Alignment explanation
Indices: 43904385--43904460 Score: 59
Period size: 3 Copynumber: 25.0 Consensus size: 3
43904375 TTGTGTTGAT
*
43904385 TTA TTA TT- TTCA TATA TTA TTA TTA TTA TTA TTA TTA TT- TTC TTA
1 TTA TTA TTA TT-A T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
43904430 TTA CTTA GTT- TTA TTT TTG TTA TGA TTA TTA
1 TTA -TTA -TTA TTA TTA TTA TTA TTA TTA TTA
43904461 GTCATTTTGG
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
2 6 0.10
3 45 0.75
4 8 0.13
5 1 0.02
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:43910775 original size:73 final size:73
Alignment explanation
Indices: 43910688--43910830 Score: 268
Period size: 73 Copynumber: 2.0 Consensus size: 73
43910678 TCGAGGATTG
*
43910688 CTCTTTAAATCAAACAAAATAAAACTTATCATCGGGAATTCAATATGTTGTGTCCTAACGTTTTG
1 CTCTTTAAATCAAACAAAATAAAACTTATCATCGGGAATTCAATATGTTGTGTCCTAACGTATTG
43910753 GATGTACA
66 GATGTACA
*
43910761 CTCTTTAAATCAAACAAAATAAAACTTATCATCGGGAATTCAATATGTTGTGTCCTAATGTATTG
1 CTCTTTAAATCAAACAAAATAAAACTTATCATCGGGAATTCAATATGTTGTGTCCTAACGTATTG
43910826 GATGT
66 GATGT
43910831 GACATGTTGA
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 68 1.00
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (73 bp):
CTCTTTAAATCAAACAAAATAAAACTTATCATCGGGAATTCAATATGTTGTGTCCTAACGTATTG
GATGTACA
Found at i:43916249 original size:4 final size:4
Alignment explanation
Indices: 43916235--43916264 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
43916225 TTGCATGTCA
43916235 TTAT CTTAT TTAT TTAT TTAT TTAT TTAT T
1 TTAT -TTAT TTAT TTAT TTAT TTAT TTAT T
43916265 CATATTATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.73
Consensus pattern (4 bp):
TTAT
Found at i:43916772 original size:39 final size:39
Alignment explanation
Indices: 43916728--43916805 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
43916718 TTGTGAAGAG
43916728 AATAAAATGTTGTGCCCTAACACATTGGGTGTGATATTT
1 AATAAAATGTTGTGCCCTAACACATTGGGTGTGATATTT
* *
43916767 AATAAAATTTTGTGCCCTAACGCATTGGGTGTGATATTT
1 AATAAAATGTTGTGCCCTAACACATTGGGTGTGATATTT
43916806 TTCTTTTCAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.37
Consensus pattern (39 bp):
AATAAAATGTTGTGCCCTAACACATTGGGTGTGATATTT
Found at i:43918994 original size:31 final size:32
Alignment explanation
Indices: 43918938--43918998 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
43918928 AAATTACAAG
43918938 AGTAATTGAATCCTAATAAAAACTCTTTAAAA
1 AGTAATTGAATCCTAATAAAAACTCTTTAAAA
43918970 AGTAATTGAATCCTAAT-AAAACTCTTTAA
1 AGTAATTGAATCCTAATAAAAACTCTTTAA
43918999 TATTATCTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 12 0.41
32 17 0.59
ACGTcount: A:0.48, C:0.13, G:0.07, T:0.33
Consensus pattern (32 bp):
AGTAATTGAATCCTAATAAAAACTCTTTAAAA
Found at i:43924785 original size:31 final size:32
Alignment explanation
Indices: 43924725--43924786 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
43924715 AAATTACAAG
*
43924725 AGTAATTGAATCCTAATAAAAACTTTTTAAAT
1 AGTAATTGAATCCTAATAAAAACTCTTTAAAT
43924757 AGTAATTGAATCCTAAT-AAAACTCTTTAAA
1 AGTAATTGAATCCTAATAAAAACTCTTTAAA
43924787 ATTATCTAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 12 0.41
32 17 0.59
ACGTcount: A:0.47, C:0.11, G:0.06, T:0.35
Consensus pattern (32 bp):
AGTAATTGAATCCTAATAAAAACTCTTTAAAT
Found at i:43935080 original size:217 final size:217
Alignment explanation
Indices: 43934702--43935775 Score: 1668
Period size: 217 Copynumber: 5.0 Consensus size: 217
43934692 ACAAATCCGT
* * * *
43934702 AGCCGATAATCCTATCTGCCTGAAGTTGTAGTGGAGCAGATTAAAATCACTGATCTTATCTCTCT
1 AGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCT
*
43934767 GAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGAAGCAGGCTAAGT
66 GAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTAAGT
*
43934832 AAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCACCCTG
131 AAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTG
43934897 AAGTTGCAGTGGAGCAGATTAA
196 AAGTTGCAGTGGAGCAGATTAA
* *
43934919 AGTCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATATCTCT
1 AGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCT
* * *
43934984 GAAGTTGTAGAGAGCAGGTCGCATCTAGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGGCTAAGT
66 GAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTAAGT
* * *
43935049 AAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCGGACTGAAAATGGCAAATCTTATCTCCCTG
131 AAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTG
43935114 AAGTTGCAGTGGAGCAGATTAA
196 AAGTTGCAGTGGAGCAGATTAA
** *
43935136 AGCCGGCAATCCTATCTCTCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCT
1 AGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCT
43935201 GAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTAAGT
66 GAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTAAGT
* *
43935266 AAGCAAGTCTTATCCTCTTGAAGTTGCAGTGAGGCAGATTGAAGATGACAAATCTTA-CTCCCTG
131 AAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTG
**
43935330 AAGTTGCAAAGGAGCAGATTAA
196 AAGTTGCAGTGGAGCAGATTAA
* * *
43935352 AGCCGATAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATCACAAATCTTATCTCTCA
1 AGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCT
* * *
43935417 GAAGTTGCAGAGAGTAGATCGCATCTAGTCTTATCTCCCTGATGTTGCAGTGGAGCAGACTAAGT
66 GAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTAAGT
* * * * *
43935482 AAGCAAGTCTTATCCTTCTGAAGTTGCAATGAGGCAGACTGAAGATGGCAAATCTTATCTTCCTA
131 AAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTG
*
43935547 AAGTTGCACTGGAGCAGATTAA
196 AAGTTGCAGTGGAGCAGATTAA
* * *
43935569 AGCCGACAATCCTATCTCTCTGAAGTTGCAGTGGAGTGGATTAAAATCACAGATCTTATCTCTCT
1 AGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCT
* * ** * *
43935634 AAAGTTGCAAAGAGCAGATTACATCTAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAGT
66 GAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTAAGT
* * * * * * *
43935699 AGGCAAATCTTATCTTCCTGAAGTTGCAGTG-GAGCAGATTAAAGATGATAATTC-TATCTCCCT
131 AAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAG-GCAGACTGAAGATGACAAATCTTATCTCCCT
*
43935762 AAAGTTGCAGTGGA
195 GAAGTTGCAGTGGA
43935776 ATAGACTAAG
Statistics
Matches: 783, Mismatches: 72, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
216 222 0.28
217 561 0.72
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (217 bp):
AGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCT
GAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTAAGT
AAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTG
AAGTTGCAGTGGAGCAGATTAA
Found at i:43935158 original size:173 final size:173
Alignment explanation
Indices: 43934837--43935163 Score: 400
Period size: 173 Copynumber: 1.9 Consensus size: 173
43934827 TAAGTAAGCA
*
43934837 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCACCCTGAAGTT
1 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGAAGACAAATCTTATCACCCTGAAGTT
* * * *
43934902 GCAGTGGAGCAGATTAAAGTCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATC
66 GCAGTGGAGCAGATGAAAATCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC
*
43934967 ACAGATCTTATATCTCTGAAGTTGTAGAGAGCAGGTCGCATCT
131 ACAGATCCTATATCTCTGAAGTTGTAGAGAGCAGGTCGCATCT
* *
43935010 AGTCTTAT-CTCTCTGAAGTTGCAGTG-GAGCAGGCT-AAGTAAG-CAAGTCTTATC-CTCCTGA
1 AGTCTTATCCTC-CTGAAGTTGCAGTGAG-GCAGACTGAAG-AAGACAAATCTTATCAC-CCTGA
* * *
43935070 AGTTGCAGT-GAGGCGGACTGAAAATGGCA-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
62 AGTTGCAGTGGA-GCAGA-TGAAAATCG-ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * *
43935133 TAAAGCCGGCA-ATCCTATCTCTCTGAAGTTG
124 TAAAACC-ACAGATCCTATATCTCTGAAGTTG
43935164 CAGTGGAGCG
Statistics
Matches: 132, Mismatches: 14, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
171 3 0.02
172 35 0.27
173 91 0.69
174 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.27
Consensus pattern (173 bp):
AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGAAGACAAATCTTATCACCCTGAAGTT
GCAGTGGAGCAGATGAAAATCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC
ACAGATCCTATATCTCTGAAGTTGTAGAGAGCAGGTCGCATCT
Found at i:43935331 original size:128 final size:129
Alignment explanation
Indices: 43935101--43935348 Score: 317
Period size: 128 Copynumber: 1.9 Consensus size: 129
43935091 AAATGGCAAA
* **
43935101 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGGCAATCCTATCTCTCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGCAAGCAATCCTATCTCTCTGAAGTTGCA
* * * *
43935166 GTGGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGA-GAGCAGATCGCATCTAG
66 GTGGAGCAGATTAAAATCACAAATCTTATCTCCCTGAAGTTGCAAAGGAGCAGATCGCATCTAG
* * *
43935229 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCT-AAGTAAGCAAGTCTTATC-CTCTTGAAGTTG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGCAAGCAA-TCCTATCTCTC-TGAAGTTG
* *
43935292 CAGT-GAGGCAGATTGAAGATGACAAATCTTA-CTCCCTGAAGTTGCAAAGGAGCAGAT
64 CAGTGGA-GCAGATT-AAAATCACAAATCTTATCTCCCTGAAGTTGCAAAGGAGCAGAT
43935349 TAAAGCCGAT
Statistics
Matches: 103, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
127 12 0.12
128 70 0.68
129 21 0.20
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (129 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGCAAGCAATCCTATCTCTCTGAAGTTGCA
GTGGAGCAGATTAAAATCACAAATCTTATCTCCCTGAAGTTGCAAAGGAGCAGATCGCATCTAG
Found at i:43935496 original size:433 final size:434
Alignment explanation
Indices: 43934702--43935770 Score: 1705
Period size: 433 Copynumber: 2.5 Consensus size: 434
43934692 ACAAATCCGT
* * * *
43934702 AGCCGATAATCCTATCTGC-CTGAAGTTGTAGTGGAGCAGATTAAAATCACTGATCTTATCTCTC
1 AGCCGACAATCCTATCT-CTCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTC
*
43934766 TGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGAAGCAGGCTAAG
65 TGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTAAG
* *
43934831 TAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCACCCT
130 TAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGATTGAAGATGACAAATCTTATCTCCCT
** * *
43934896 GAAGTTGCAGTGGAGCAGATTAAAGTCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATT
195 GAAGTTGCAAAGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATT
* * * * *
43934961 AAAATCACAGATCTTATATCTCTGAAGTTGTAGAGAGCAGGTCGCATCTAGTCTTATCTCTCTGA
260 AAAATCACAAATCTTATATCTCAGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGA
* * *
43935026 AGTTGCAGTGGAGCAGGCTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCGGACTGA
325 AGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAATGAGGCAGACTGA
* *
43935091 AAATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA
390 AAATGGCAAATCTTATCTCCCTAAAGTTGCACTGGAGCAGATTAA
*
43935136 AGCCGGCAATCCTATCTCTCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCT
1 AGCCGACAATCCTATCTCTCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCT
43935201 GAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTAAGT
66 GAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTAAGT
*
43935266 AAGCAAGTCTTATCCTCTTGAAGTTGCAGTGAGGCAGATTGAAGATGACAAATCTTA-CTCCCTG
131 AAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGATTGAAGATGACAAATCTTATCTCCCTG
43935330 AAGTTGCAAAGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTA
196 AAGTTGCAAAGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTA
* * *
43935395 AAATCACAAATCTTATCTCTCAGAAGTTGCAGAGAGTAGATCGCATCTAGTCTTATCTCCCTGAT
261 AAATCACAAATCTTATATCTCAGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAA
*
43935460 GTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTTCTGAAGTTGCAATGAGGCAGACTGAA
326 GTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAATGAGGCAGACTGAA
* *
43935525 GATGGCAAATCTTATCTTCCTAAAGTTGCACTGGAGCAGATTAA
391 AATGGCAAATCTTATCTCCCTAAAGTTGCACTGGAGCAGATTAA
*
43935569 AGCCGACAATCCTATCTCTCTGAAGTTGCAGTGGAGTGGATTAAAATCACAGATCTTATCTCTCT
1 AGCCGACAATCCTATCTCTCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCT
* * ** * *
43935634 AAAGTTGCAAAGAGCAGATTACATCTAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAGT
66 GAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTAAGT
* * * * * *
43935699 AGGCAAATCTTATCTTCCTGAAGTTGCAGTG-GAGCAGATTAAAGATGATAATTC-TATCTCCCT
131 AAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAG-GCAGATTGAAGATGACAAATCTTATCTCCCT
*
43935762 AAAGTTGCA
195 GAAGTTGCA
43935771 GTGGAATAGA
Statistics
Matches: 587, Mismatches: 45, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
432 3 0.01
433 407 0.69
434 177 0.30
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (434 bp):
AGCCGACAATCCTATCTCTCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCT
GAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTAAGT
AAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGATTGAAGATGACAAATCTTATCTCCCTG
AAGTTGCAAAGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTA
AAATCACAAATCTTATATCTCAGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAA
GTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAATGAGGCAGACTGAA
AATGGCAAATCTTATCTCCCTAAAGTTGCACTGGAGCAGATTAA
Found at i:43935736 original size:44 final size:44
Alignment explanation
Indices: 43934795--43935740 Score: 370
Period size: 44 Copynumber: 21.8 Consensus size: 44
43934785 TCGCATCTAG
* * ** * *
43934795 TCTTATCTCCCTGAAGTTGCAGTGAAGCAGGCTAAGTAAGCAAG
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAGTAGGCAAA
* * *
43934839 TCTTATCCTCCTGAAGTTGCAGT-GAGGCAGACTGAAG-ATGACAAA
1 TCTTATCTTCCTGAAGTTGCAGTGGA-GCAGA-TTAAGTA-GGCAAA
** *
43934884 TCTTATCACCCTGAAGTTGCAGTGGAGCAGATTAA--AGTCGATAA
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAGTAGGC-A-AA
* * * * *
43934928 TCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCA--CAGA
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGATT-AAGT-AGGCAAA
* * * * * * * * *
43934972 TCTTAT-ATCTCTGAAGTTGTAG-AGAGCAG-GT-CGCA-TCTAG
1 TCTTATCTTC-CTGAAGTTGCAGTGGAGCAGATTAAGTAGGCAAA
** * *
43935012 TCTTATC-TCTCTGAAGTTGCAGTGGAGCAGGCTAAGTAAGCAAG
1 TCTTATCTTC-CTGAAGTTGCAGTGGAGCAGATTAAGTAGGCAAA
* * * *
43935056 TCTTATCCTCCTGAAGTTGCAGT-GAGGCGGACTGAA-AATGGCAAA
1 TCTTATCTTCCTGAAGTTGCAGTGGA-GCAGA-TTAAGTA-GGCAAA
* **
43935101 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGGC-AA
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGATT-AAGTAGGCAAA
* * * *
43935145 TCCTATC-TCTCTGAAGTTGCAGTGGAGCGGATTAAAATCA--CAGA
1 TCTTATCTTC-CTGAAGTTGCAGTGGAGCAGATT-AAGT-AGGCAAA
* * * * * *
43935189 TCTTATC-TCTCTGAAGTTGCAG-AGAGCAGA-T-CGCA-TCTAG
1 TCTTATCTTC-CTGAAGTTGCAGTGGAGCAGATTAAGTAGGCAAA
* ** * *
43935229 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTAAGTAAGCAAG
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAGTAGGCAAA
* * *
43935273 TCTTATCCTCTTGAAGTTGCAGT-GAGGCAGATTGAAG-ATGACAAA
1 TCTTATCTTCCTGAAGTTGCAGTGGA-GCAGATT-AAGTA-GGCAAA
* ** *
43935318 TCTTA-CTCCCTGAAGTTGCAAAGGAGCAGATTAA--AGCCGATAA
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAGTAGGC-A-AA
* * * * *
43935361 TCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATCA--CAAA
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGATT-AAGT-AGGCAAA
* * * * * * * *
43935405 TCTTATC-TCTCAGAAGTTGCAG-AGAGTAGA-T-CGCA-TCTAG
1 TCTTATCTTC-CTGAAGTTGCAGTGGAGCAGATTAAGTAGGCAAA
* * * * *
43935445 TCTTATCTCCCTGATGTTGCAGTGGAGCAGACTAAGTAAGCAAG
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAGTAGGCAAA
* *
43935489 TCTTATCCTT-CTGAAGTTGCAAT-GAGGCAGACTGAAG-ATGGCAAA
1 TCTTAT-CTTCCTGAAGTTGCAGTGGA-GCAGA-TTAAGTA-GGCAAA
* * *
43935534 TCTTATCTTCCTAAAGTTGCACTGGAGCAGATTAA--AGCCGACAA
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAGTAGGC-A-AA
* ** * *
43935578 TCCTATC-TCTCTGAAGTTGCAGTGGAGTGGATTAAAATCA--CAGA
1 TCTTATCTTC-CTGAAGTTGCAGTGGAGCAGATT-AAGT-AGGCAAA
* ** * *
43935622 TCTTATC-TCTCTAAAGTTGCA-AAGAGCAGATTACA-T---CTAG
1 TCTTATCTTC-CTGAAGTTGCAGTGGAGCAGATTA-AGTAGGCAAA
* * *
43935662 TCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAGTAGGCAAA
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAGTAGGCAAA
43935706 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAA
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAA
43935741 AGATGATAAT
Statistics
Matches: 682, Mismatches: 149, Indels: 142
0.70 0.15 0.15
Matches are distributed among these distances:
39 3 0.00
40 79 0.12
41 33 0.05
42 14 0.02
43 55 0.08
44 363 0.53
45 123 0.18
46 9 0.01
48 3 0.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (44 bp):
TCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAGTAGGCAAA
Found at i:43935757 original size:44 final size:44
Alignment explanation
Indices: 43935662--43935775 Score: 108
Period size: 44 Copynumber: 2.6 Consensus size: 44
43935652 TTACATCTAG
* * * * *
43935662 TCTTATCTCCCTGAAGTTGCAATGGAGCAGACT-AAG-TAGGCAAA
1 TCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTAAAGAT-GAC-AA
* *
43935706 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAAGATGATAA
1 TCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTAAAGATGACAA
*
43935750 T-TCTATCTCCCTAAAGTTGCAGTGGA
1 TCT-TATCTTCCTAAAGTTGCAGTGGA
43935776 ATAGACTAAG
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
43 1 0.02
44 54 0.90
45 4 0.07
46 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (44 bp):
TCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTAAAGATGACAA
Found at i:43935764 original size:128 final size:128
Alignment explanation
Indices: 43935534--43935770 Score: 295
Period size: 128 Copynumber: 1.9 Consensus size: 128
43935524 AGATGGCAAA
* * *
43935534 TCTTATCTTCCTAAAGTTGCACTGGAGCAGATTAAAGCCGACAATCCTATCTCTCTGAAGTTGCA
1 TCTTATCTCCCTAAAGTTGCAATGGAGCAGACTAAAGCCGACAATCCTATCTCTCTGAAGTTGCA
** *
43935599 GTGGAGTGGATTAAAATCACAGATCTTATCTCTCTAAAGTTGCAAAGAGCAGATTACATCTAG
66 GTGGAGCAGATTAAAATCACAGATCTTATCTCCCTAAAGTTGCAAAGAGCAGATTACATCTAG
* * *
43935662 TCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAGTAGGC-A-AATCTTATCT-TCCTGAAGTT
1 TCTTATCTCCCTAAAGTTGCAATGGAGCAGACTAA--AGCCGACAATCCTATCTCT-CTGAAGTT
* *
43935724 GCAGTGGAGCAGATTAAAGATGATA-AT-TCTATCTCCCTAAAGTTGCA
63 GCAGTGGAGCAGATTAAA-ATCACAGATCT-TATCTCCCTAAAGTTGCA
43935771 GTGGAATAGA
Statistics
Matches: 93, Mismatches: 11, Indels: 10
0.82 0.10 0.09
Matches are distributed among these distances:
127 2 0.02
128 83 0.89
129 5 0.05
130 3 0.03
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (128 bp):
TCTTATCTCCCTAAAGTTGCAATGGAGCAGACTAAAGCCGACAATCCTATCTCTCTGAAGTTGCA
GTGGAGCAGATTAAAATCACAGATCTTATCTCCCTAAAGTTGCAAAGAGCAGATTACATCTAG
Found at i:43937318 original size:20 final size:21
Alignment explanation
Indices: 43937280--43937318 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
43937270 GTAATTATTA
*
43937280 TTATTTTATATATATGTATAT
1 TTATTTTATATATACGTATAT
*
43937301 TTATTTT-TATGTACGTAT
1 TTATTTTATATATACGTAT
43937319 TTATACCCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.28, C:0.03, G:0.08, T:0.62
Consensus pattern (21 bp):
TTATTTTATATATACGTATAT
Found at i:43938173 original size:44 final size:44
Alignment explanation
Indices: 43938124--43938842 Score: 530
Period size: 44 Copynumber: 16.5 Consensus size: 44
43938114 AGTAAGCAAG
43938124 TCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAATGACAAA
1 TCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAATGACAAA
* * *
43938168 TCTTAT-CTCCCTGAAGTTGCAGTTG-GGCAGACT-AAGTAAGCAAG
1 TCTTATCCT-CCTGAAGTTGCAG-TGAGGCAGACTGAAATGA-CAAA
43938212 TCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAATGACAAA
1 TCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAATGACAAA
* * *
43938256 TCTTAT-CTCCCTGAAGTTGCAGTTG-GGCAGACT-AAGTAAGCAAG
1 TCTTATCCT-CCTGAAGTTGCAG-TGAGGCAGACTGAAATGA-CAAA
43938300 TCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAATGACAAA
1 TCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAATGACAAA
* * *
43938344 TCTTAT-CTCCCTGAAGTTGCAGTTG-GGCAGACT-AAGTAAGCAAG
1 TCTTATCCT-CCTGAAGTTGCAG-TGAGGCAGACTGAAATGA-CAAA
43938388 TCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAATGACAAA
1 TCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAATGACAAA
* * * *
43938432 TCTTAT-CTCCCTGAAGTTGCAGTG-GAGCGGATTAAAATCACAAA
1 TCTTATCCT-CCTGAAGTTGCAGTGAG-GCAGACTGAAATGACAAA
* * * * * *
43938476 TCTTAT-CTCTCTAAAGTTGCAGAGA-GAAGA-TCG-CAT--CTAG
1 TCTTATCCTC-CTGAAGTTGCAGTGAGGCAGACT-GAAATGACAAA
* * * *
43938516 TCTTAT-CTCCCTGAAGTTGCAGTG-GAGCAGGCT-AAGTAAGCAAG
1 TCTTATCCT-CCTGAAGTTGCAGTGAG-GCAGACTGAAATGA-CAAA
*
43938560 TCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAA
1 TCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAA-ATGACAAA
* * *
43938605 TCTTA-CCTCCCTGAAGTTGCAGTG-GAGCAGA-TTATAACCGA-TAA
1 TCTTATCCT-CCTGAAGTTGCAGTGAG-GCAGACTGA-AA-TGACAAA
* * * * * * * *
43938649 TCCTATCTTCTTGAAGTTGCAGTG-GAGCGGATTAAAATCACAGA
1 TCTTATCCTCCTGAAGTTGCAGTGAG-GCAGACTGAAATGACAAA
* * * * * * *
43938693 TCTTAT-CTCTTTGAAGTTGCAGAGA-GTAGATTG-CAT--CTAG
1 TCTTATCCTC-CTGAAGTTGCAGTGAGGCAGACTGAAATGACAAA
* * * *
43938733 TCTTAT-CTCCCTGAAGTTGCAGTGGGGCAGACT-AAGTAAGCAAG
1 TCTTATCCT-CCTGAAGTTGCAGTGAGGCAGACTGAAATGA-CAAA
* *
43938777 TCTTATCCTCCTAAAGTTGCAGTGAGGCAGACTGAAGATGGCAAA
1 TCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAA-ATGACAAA
* *
43938822 TCTTATCTTCCTAAAGTTGCA
1 TCTTATCCTCCTGAAGTTGCA
43938843 CTGGAACAAA
Statistics
Matches: 542, Mismatches: 80, Indels: 105
0.75 0.11 0.14
Matches are distributed among these distances:
40 43 0.08
41 12 0.02
42 6 0.01
43 39 0.07
44 350 0.65
45 90 0.17
46 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (44 bp):
TCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAATGACAAA
Found at i:43938247 original size:88 final size:88
Alignment explanation
Indices: 43938098--43939073 Score: 834
Period size: 88 Copynumber: 11.2 Consensus size: 88
43938088 TTACAGTGGA
*
43938098 GCAGTGGAGCAGGCTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAATG
1 GCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAATG
43938163 ACAAATCTTATCTCCCTGAAGTT
66 ACAAATCTTATCTCCCTGAAGTT
43938186 GCAGTTGG-GCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAAT
1 GCAG-TGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAAT
43938250 GACAAATCTTATCTCCCTGAAGTT
65 GACAAATCTTATCTCCCTGAAGTT
43938274 GCAGTTGG-GCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAAT
1 GCAG-TGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAAT
43938338 GACAAATCTTATCTCCCTGAAGTT
65 GACAAATCTTATCTCCCTGAAGTT
43938362 GCAGTTGG-GCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAAT
1 GCAG-TGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAAT
43938426 GACAAATCTTATCTCCCTGAAGTT
65 GACAAATCTTATCTCCCTGAAGTT
* * * * * * * * *
43938450 GCAGTGGAGCGGATTAAAATCA-CAAATCTTAT-CTCTCTAAAGTTGCAGAGA-GAAGA-TCG-C
1 GCAGTGGAGCAGACT-AAGTAAGCAAGTCTTATCCTC-CTGAAGTTGCAGTGAGGCAGACT-GAA
* *
43938510 AT--CTAGTCTTATCTCCCTGAAGTT
63 ATGACAAATCTTATCTCCCTGAAGTT
*
43938534 GCAGTGGAGCAGGCTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGAT
1 GCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAA-AT
* *
43938599 GGCAAATCTTACCTCCCTGAAGTT
65 GACAAATCTTATCTCCCTGAAGTT
* * * * * * * * *
43938623 GCAGTGGAGCAGA-TTA-TAACCGATAATCCTATCTTCTTGAAGTTGCAGTG-GAGCGGATTAAA
1 GCAGTGGAGCAGACTAAGTAAGC-A-AGTCTTATCCTCCTGAAGTTGCAGTGAG-GCAGACTGAA
* * **
43938685 ATCACAGATCTTATCTCTTTGAAGTT
63 ATGACAAATCTTATCTCCCTGAAGTT
* * * * * * * *
43938711 GCAG-AGAGTAGA-T-TG-CATCTAGTCTTAT-CTCCCTGAAGTTGCAGTGGGGCAGACT-AAGT
1 GCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCT-CCTGAAGTTGCAGTGAGGCAGACTGAAAT
* * *
43938770 AAGCAAGTCTTATC-CTCCTAAAGTT
65 GA-CAAATCTTATCTC-CCTGAAGTT
* * * * * * * *
43938795 GCAGT-GAGGCAGACTGAAG-ATGGCAAATCTTATCTTCCTAAAGTTGCACTG-GAACA-AATTA
1 GCAGTGGA-GCAGACT-AAGTA-AGCAAGTCTTATCCTCCTGAAGTTGCAGTGAG-GCAGACTGA
* *
43938856 AA-GCCGACAATCCTATCTCCCTGAAGTT
62 AATGAC-A-AATCTTATCTCCCTGAAGTT
* * * * * * * * *
43938884 ACAGTGGAGCGGATTAA--AATCACAGATCTTAT-CTCTCTAAATTTGCAGAGA-GCAGATTG-C
1 GCAGTGGAGCAGACTAAGTAAGCA-AG-TCTTATCCTC-CTGAAGTTGCAGTGAGGCAGACTGAA
* *
43938944 AT--CTAGTCTTATCTCCCTGAAGTT
63 ATGACAAATCTTATCTCCCTGAAGTT
* * * ** * * *
43938968 GCAATGGAGCAGACTAAGTAGGCAAATCTTATATTCTTGAAGTTGCAGTG-GAGAAGA-TTAAAG
1 GCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAG-GCAGACTGAAA-
* *
43939031 CTGA-TAATCCTATCTCCCTGAAGTT
64 -TGACAAATCTTATCTCCCTGAAGTT
**
43939056 GCAGTGGAATAGACTAAG
1 GCAGTGGAGCAGACTAAG
43939074 GTAGCAAATA
Statistics
Matches: 723, Mismatches: 115, Indels: 100
0.77 0.12 0.11
Matches are distributed among these distances:
83 10 0.01
84 148 0.20
85 21 0.03
86 13 0.02
87 33 0.05
88 378 0.52
89 116 0.16
90 4 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (88 bp):
GCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAATG
ACAAATCTTATCTCCCTGAAGTT
Found at i:43938698 original size:217 final size:216
Alignment explanation
Indices: 43938098--43939017 Score: 1037
Period size: 217 Copynumber: 4.2 Consensus size: 216
43938088 TTACAGTGGA
*
43938098 GCAGTGGAGCAGGCTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAA-AT
1 GCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGAT
* * * * * *
43938162 GACAAATCTTATCTCCCTGAAGTTGCAGTTGG-GCAGACTAAGTAAGC-AAGTCTTATC-CTCCT
66 GGCAAATCTTACCTCCCTGAAGTTGCAG-TGGAGCAGACTTA--AACCGAAATCCTATCTC-CCT
* * * * * * * *
43938224 GAAGTTGCAGT-GAGGCAGACTGAAATGACAAATCTTATCTCCCTGAAGTTGCAGTTGGGCAGAC
127 GAAGTTGCAGTGGA-GCGGATTAAAATCACAAATCTTATCTCTCTAAAGTTGCAG-AGAGCAGA-
* * * *
43938288 TAAGTAAGCAAGTCTTATC-CTCCTGAAGTT
189 T-TG-CATCTAGTCTTATCTC-CCTGAAGTT
* * *
43938318 GCAGT-GAGGCAGACTGAAATGA-CAAATCTTAT-CTCCCTGAAGTTGCAGTTG-GGCAGACT-A
1 GCAGTGGA-GCAGACT-AAGTAAGCAAGTCTTATCCT-CCTGAAGTTGCAG-TGAGGCAGACTGA
* * * * *
43938378 AG-TAAGCAAGTCTTATCCT-CCTGAAGTTGCAGT-GAGGCAGACTGAAA-TGACAAATCTTATC
62 AGAT-GGCAAATCTTA-CCTCCCTGAAGTTGCAGTGGA-GCAGACTTAAACCG--AAATCCTATC
*
43938439 TCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAAATCTTATCTCTCTAAAGTTGCAGAGAGAA
122 TCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAAATCTTATCTCTCTAAAGTTGCAGAGAGCA
*
43938504 GATCGCATCTAGTCTTATCTCCCTGAAGTT
187 GATTGCATCTAGTCTTATCTCCCTGAAGTT
*
43938534 GCAGTGGAGCAGGCTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGAT
1 GCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGAT
* *
43938599 GGCAAATCTTACCTCCCTGAAGTTGCAGTGGAGCAGA-TTATAACCGATAATCCTATCTTCTTGA
66 GGCAAATCTTACCTCCCTGAAGTTGCAGTGGAGCAGACTTA-AACCGA-AATCCTATCTCCCTGA
* * * *
43938663 AGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTTTGAAGTTGCAGAGAGTAGATTGCA
129 AGTTGCAGTGGAGCGGATTAAAATCACAAATCTTATCTCTCTAAAGTTGCAGAGAGCAGATTGCA
43938728 TCTAGTCTTATCTCCCTGAAGTT
194 TCTAGTCTTATCTCCCTGAAGTT
* *
43938751 GCAGTGGGGCAGACTAAGTAAGCAAGTCTTATCCTCCTAAAGTTGCAGTGAGGCAGACTGAAGAT
1 GCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGAT
* * * * * *
43938816 GGCAAATCTTATCTTCCTAAAGTTGCACTGGAACA-AATTAAAGCCGACAATCCTATCTCCCTGA
66 GGCAAATCTTACCTCCCTGAAGTTGCAGTGGAGCAGACTTAAA-CCGA-AATCCTATCTCCCTGA
* * *
43938880 AGTTACAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCTAAATTTGCAGAGAGCAGATTGCA
129 AGTTGCAGTGGAGCGGATTAAAATCACAAATCTTATCTCTCTAAAGTTGCAGAGAGCAGATTGCA
43938945 TCTAGTCTTATCTCCCTGAAGTT
194 TCTAGTCTTATCTCCCTGAAGTT
* * * ** *
43938968 GCAATGGAGCAGACTAAGTAGGCAAATCTTATATTCTTGAAGTTGCAGTG
1 GCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTG
43939018 GAGAAGATTA
Statistics
Matches: 608, Mismatches: 64, Indels: 59
0.83 0.09 0.08
Matches are distributed among these distances:
215 6 0.01
216 70 0.12
217 373 0.61
218 8 0.01
219 13 0.02
220 127 0.21
221 11 0.02
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (216 bp):
GCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGAT
GGCAAATCTTACCTCCCTGAAGTTGCAGTGGAGCAGACTTAAACCGAAATCCTATCTCCCTGAAG
TTGCAGTGGAGCGGATTAAAATCACAAATCTTATCTCTCTAAAGTTGCAGAGAGCAGATTGCATC
TAGTCTTATCTCCCTGAAGTT
Found at i:43938917 original size:44 final size:44
Alignment explanation
Indices: 43938098--43939072 Score: 499
Period size: 44 Copynumber: 22.4 Consensus size: 44
43938088 TTACAGTGGA
* *
43938098 GCAGTGGAGCAGGCTAAGTAAGCA-AG-TCTTATC-CTCCTGAAGTT
1 GCAGTGGAGCAGACTAA--AATCACAGATCTTATCTC-CCTGAAGTT
* * *
43938142 GCAGT-GAGGCAGACTGAAATGACAAATCTTATCTCCCTGAAGTT
1 GCAGTGGA-GCAGACTAAAATCACAGATCTTATCTCCCTGAAGTT
*
43938186 GCAGTTGG-GCAGACTAAGTAAGCA-AG-TCTTATC-CTCCTGAAGTT
1 GCAG-TGGAGCAGACTAA--AATCACAGATCTTATCTC-CCTGAAGTT
* * *
43938230 GCAGT-GAGGCAGACTGAAATGACAAATCTTATCTCCCTGAAGTT
1 GCAGTGGA-GCAGACTAAAATCACAGATCTTATCTCCCTGAAGTT
*
43938274 GCAGTTGG-GCAGACTAAGTAAGCA-AG-TCTTATC-CTCCTGAAGTT
1 GCAG-TGGAGCAGACTAA--AATCACAGATCTTATCTC-CCTGAAGTT
* * *
43938318 GCAGT-GAGGCAGACTGAAATGACAAATCTTATCTCCCTGAAGTT
1 GCAGTGGA-GCAGACTAAAATCACAGATCTTATCTCCCTGAAGTT
*
43938362 GCAGTTGG-GCAGACTAAGTAAGCA-AG-TCTTATC-CTCCTGAAGTT
1 GCAG-TGGAGCAGACTAA--AATCACAGATCTTATCTC-CCTGAAGTT
* * *
43938406 GCAGT-GAGGCAGACTGAAATGACAAATCTTATCTCCCTGAAGTT
1 GCAGTGGA-GCAGACTAAAATCACAGATCTTATCTCCCTGAAGTT
* * * * *
43938450 GCAGTGGAGCGGATTAAAATCACAAATCTTATCTCTCTAAAGTT
1 GCAGTGGAGCAGACTAAAATCACAGATCTTATCTCCCTGAAGTT
* * *** *
43938494 GCAG-AGAGAAGA-TCGCATC-TAG-TCTTATCTCCCTGAAGTT
1 GCAGTGGAGCAGACTAAAATCACAGATCTTATCTCCCTGAAGTT
* *
43938534 GCAGTGGAGCAGGCTAAGTAAGCA-AG-TCTTATC-CTCCTGAAGTT
1 GCAGTGGAGCAGACTAA--AATCACAGATCTTATCTC-CCTGAAGTT
* ** * *
43938578 GCAGT-GAGGCAGACTGAAGATGGCAAATCTTACCTCCCTGAAGTT
1 GCAGTGGA-GCAGACT-AAAATCACAGATCTTATCTCCCTGAAGTT
* * * * * * *
43938623 GCAGTGGAGCAGATTATAACCGATA-ATCCTATCTTCTTGAAGTT
1 GCAGTGGAGCAGACTAAAATC-ACAGATCTTATCTCCCTGAAGTT
* * **
43938667 GCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTTTGAAGTT
1 GCAGTGGAGCAGACTAAAATCACAGATCTTATCTCCCTGAAGTT
* * *** *
43938711 GCAG-AGAGTAGA-TTGCATC-TAG-TCTTATCTCCCTGAAGTT
1 GCAGTGGAGCAGACTAAAATCACAGATCTTATCTCCCTGAAGTT
* * *
43938751 GCAGTGGGGCAGACTAAGTAAGCA-AG-TCTTATC-CTCCTAAAGTT
1 GCAGTGGAGCAGACTAA--AATCACAGATCTTATCTC-CCTGAAGTT
* ** * * *
43938795 GCAGT-GAGGCAGACTGAAGATGGCAAATCTTATCTTCCTAAAGTT
1 GCAGTGGA-GCAGACT-AAAATCACAGATCTTATCTCCCTGAAGTT
* * * * ** *
43938840 GCACTGGAACAAATTAAAGCCGACA-ATCCTATCTCCCTGAAGTT
1 GCAGTGGAGCAGACTAAAATC-ACAGATCTTATCTCCCTGAAGTT
* * * * * *
43938884 ACAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCTAAATTT
1 GCAGTGGAGCAGACTAAAATCACAGATCTTATCTCCCTGAAGTT
* *** *
43938928 GCAG-AGAGCAGA-TTGCATC-TAG-TCTTATCTCCCTGAAGTT
1 GCAGTGGAGCAGACTAAAATCACAGATCTTATCTCCCTGAAGTT
* * * * * *
43938968 GCAATGGAGCAGACT-AAGT-AGGCAAATCTTATATTCTTGAAGTT
1 GCAGTGGAGCAGACTAAAATCA--CAGATCTTATCTCCCTGAAGTT
* * * * * *
43939012 GCAGTGGAGAAGATTAAAGCTGATA-ATCCTATCTCCCTGAAGTT
1 GCAGTGGAGCAGACTAAA-ATCACAGATCTTATCTCCCTGAAGTT
**
43939056 GCAGTGGAATAGACTAA
1 GCAGTGGAGCAGACTAA
43939073 GGTAGCAAAT
Statistics
Matches: 703, Mismatches: 156, Indels: 144
0.70 0.16 0.14
Matches are distributed among these distances:
40 58 0.08
41 23 0.03
42 30 0.04
43 41 0.06
44 460 0.65
45 72 0.10
46 18 0.03
47 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (44 bp):
GCAGTGGAGCAGACTAAAATCACAGATCTTATCTCCCTGAAGTT
Found at i:43940310 original size:4 final size:4
Alignment explanation
Indices: 43940296--43940335 Score: 53
Period size: 4 Copynumber: 9.5 Consensus size: 4
43940286 TTGCATGTCA
*
43940296 TTAT CTTAT TTAT TTAT TTAT TTAT TTAT TCAT ATTAT TT
1 TTAT -TTAT TTAT TTAT TTAT TTAT TTAT TTAT -TTAT TT
43940336 CTATGAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
4 25 0.78
5 7 0.22
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (4 bp):
TTAT
Found at i:43947327 original size:11 final size:11
Alignment explanation
Indices: 43947307--43947350 Score: 79
Period size: 11 Copynumber: 4.0 Consensus size: 11
43947297 TTCAACAACA
43947307 TAAATCTTGTT
1 TAAATCTTGTT
*
43947318 TAAATTTTGTT
1 TAAATCTTGTT
43947329 TAAATCTTGTT
1 TAAATCTTGTT
43947340 TAAATCTTGTT
1 TAAATCTTGTT
43947351 CAACAACATA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.27, C:0.07, G:0.09, T:0.57
Consensus pattern (11 bp):
TAAATCTTGTT
Found at i:43947985 original size:45 final size:45
Alignment explanation
Indices: 43947924--43948013 Score: 126
Period size: 45 Copynumber: 2.0 Consensus size: 45
43947914 CAGTTGAGAC
43947924 ACACGCCCATGCCTCAGGCCATGTAACAATCGAAATAGAGACACA
1 ACACGCCCATGCCTCAGGCCATGTAACAATCGAAATAGAGACACA
* * ** * *
43947969 ACACGCCCGTGTCTCAGGCTGTGTAATAATCGAAATAGGGACACA
1 ACACGCCCATGCCTCAGGCCATGTAACAATCGAAATAGAGACACA
43948014 CAGCCGTGTC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.34, C:0.28, G:0.21, T:0.17
Consensus pattern (45 bp):
ACACGCCCATGCCTCAGGCCATGTAACAATCGAAATAGAGACACA
Found at i:43956140 original size:31 final size:31
Alignment explanation
Indices: 43956102--43956164 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
43956092 ACGTTTCACC
43956102 ATAGAATAAAGTCACCATCTAGAACAACCTT
1 ATAGAATAAAGTCACCATCTAGAACAACCTT
43956133 ATAGAATAAAGTCACCATCTAGAACAACCTT
1 ATAGAATAAAGTCACCATCTAGAACAACCTT
43956164 A
1 A
43956165 AAAAGAGGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.46, C:0.22, G:0.10, T:0.22
Consensus pattern (31 bp):
ATAGAATAAAGTCACCATCTAGAACAACCTT
Found at i:43958849 original size:24 final size:24
Alignment explanation
Indices: 43958822--43958940 Score: 130
Period size: 24 Copynumber: 5.0 Consensus size: 24
43958812 TTTATTGCAA
* *
43958822 TATTGAGTGGCTTGTCCATAACGT
1 TATTGAGTGGCTTGTCCACAACGC
* *
43958846 TATTGAGTGGTTTGTCCATAACGC
1 TATTGAGTGGCTTGTCCACAACGC
* *
43958870 TATTGAGTGGTTTGTCCACAAAGC
1 TATTGAGTGGCTTGTCCACAACGC
* * *
43958894 TATTGAGTGTCTTGGCCACAACGT
1 TATTGAGTGGCTTGTCCACAACGC
* * *
43958918 TAATGAGTGGTTTGACCACAACG
1 TATTGAGTGGCTTGTCCACAACG
43958941 ATGCAGTTTG
Statistics
Matches: 82, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 82 1.00
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.34
Consensus pattern (24 bp):
TATTGAGTGGCTTGTCCACAACGC
Found at i:43958990 original size:24 final size:24
Alignment explanation
Indices: 43958958--43959004 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
43958948 TTGACTGTGA
43958958 TATTGAGTGGCTCTG-CCACAACGT
1 TATTGAGTGG-TCTGACCACAACGT
*
43958982 TATTGAGTGGTTTGACCACAACG
1 TATTGAGTGGTCTGACCACAACG
43959005 ATGCAACTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 3 0.14
24 18 0.86
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (24 bp):
TATTGAGTGGTCTGACCACAACGT
Found at i:43958995 original size:64 final size:63
Alignment explanation
Indices: 43958894--43959045 Score: 214
Period size: 64 Copynumber: 2.4 Consensus size: 63
43958884 TCCACAAAGC
* ** **
43958894 TATTGAGTGTCTTGGCCACAACGTTAATGAGTGGTTTGACCACAACGATGCAGTTTGACTGTGA
1 TATTGAGTGGCTT-GCCACAACGTTAATGAGTGGTTTGACCACAACGATGCAACTTGACTGCAA
*
43958958 TATTGAGTGGCTCTGCCACAACGTTATTGAGTGGTTTGACCACAACGATGCAACTTGACTGCAA
1 TATTGAGTGGCT-TGCCACAACGTTAATGAGTGGTTTGACCACAACGATGCAACTTGACTGCAA
*
43959022 TATTGAGTGGCTAGGCCACAACGT
1 TATTGAGTGGCT-TGCCACAACGT
43959046 AGTGTGTTAT
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
64 78 0.99
65 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (63 bp):
TATTGAGTGGCTTGCCACAACGTTAATGAGTGGTTTGACCACAACGATGCAACTTGACTGCAA
Found at i:43960505 original size:48 final size:48
Alignment explanation
Indices: 43960434--43960552 Score: 168
Period size: 48 Copynumber: 2.5 Consensus size: 48
43960424 TTTACTGTAA
*
43960434 TATTGAGTGGCTTGACCACAACGTT-TGTGAGTGGCTTGACCACAATGC
1 TATTGAGTGGCTTGACCACAACGTTAT-TGAGTGGCTTGACCAAAATGC
*
43960482 TATTGAGTGGCTTGACCACAACGTTATTGAGTGGCTTGTCCAAAATGC
1 TATTGAGTGGCTTGACCACAACGTTATTGAGTGGCTTGACCAAAATGC
* ***
43960530 TACTGAGCAACTTGACCACAACG
1 TATTGAGTGGCTTGACCACAACG
43960553 ATGCAACTTG
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
48 63 0.98
49 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (48 bp):
TATTGAGTGGCTTGACCACAACGTTATTGAGTGGCTTGACCAAAATGC
Found at i:43960536 original size:24 final size:24
Alignment explanation
Indices: 43960434--43960550 Score: 128
Period size: 24 Copynumber: 4.9 Consensus size: 24
43960424 TTTACTGTAA
*
43960434 TATTGAGTGGCTTGACCACAACG-
1 TATTGAGTGGCTTGACCACAATGC
*
43960457 TTTGTGAGTGGCTTGACCACAATGC
1 TAT-TGAGTGGCTTGACCACAATGC
* *
43960482 TATTGAGTGGCTTGACCACAACGT
1 TATTGAGTGGCTTGACCACAATGC
* *
43960506 TATTGAGTGGCTTGTCCAAAATGC
1 TATTGAGTGGCTTGACCACAATGC
* ***
43960530 TACTGAGCAACTTGACCACAA
1 TATTGAGTGGCTTGACCACAA
43960551 CGATGCAACT
Statistics
Matches: 77, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
23 2 0.03
24 73 0.95
25 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.28
Consensus pattern (24 bp):
TATTGAGTGGCTTGACCACAATGC
Found at i:43960842 original size:180 final size:180
Alignment explanation
Indices: 43960540--43960877 Score: 559
Period size: 180 Copynumber: 1.9 Consensus size: 180
43960530 TACTGAGCAA
* * * *
43960540 CTTGACCACAACGATGCAACTTGACTACGATATTGAGTGGCTTTGCCACAACGTGGTGTGTTATT
1 CTTGACCACAACAATGCAACTTGACTACGATATTGAGTGGCTTGGCCACAACATGGTATGTTATT
* * * *
43960605 GGATGGACGAGTTTTGGGGAACACTTTATTGGTGTGTAGAGGAGATGGGTAGGAATGTTTTTGTA
66 GGATGGACGAGTTCTGGGAAACACTTTATTGGTGTGTAGAGGAAATGAGTAGGAATGTTTTTGTA
*
43960670 AAACTTGCACTGATTTCTAGAAAAAGCTCTGCCACAATGTTATTGAGTGG
131 AAACTTGCACTAATTTCTAGAAAAAGCTCTGCCACAATGTTATTGAGTGG
43960720 CTTGACCACAACAATGCAACTTGACTACGATATTGAGTGGCTTGGCCACAACATGGTATGTTATT
1 CTTGACCACAACAATGCAACTTGACTACGATATTGAGTGGCTTGGCCACAACATGGTATGTTATT
*
43960785 GGATGGACGAGTTCTGGGAAACTCTTTATTGGTGTGTAGAGGAAATGAGTAGGAATGTTTTTGTA
66 GGATGGACGAGTTCTGGGAAACACTTTATTGGTGTGTAGAGGAAATGAGTAGGAATGTTTTTGTA
* * *
43960850 AACCTTGCACTAATTTTTGGAAAAAGCT
131 AAACTTGCACTAATTTCTAGAAAAAGCT
43960878 TTGTATTGAC
Statistics
Matches: 145, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
180 145 1.00
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (180 bp):
CTTGACCACAACAATGCAACTTGACTACGATATTGAGTGGCTTGGCCACAACATGGTATGTTATT
GGATGGACGAGTTCTGGGAAACACTTTATTGGTGTGTAGAGGAAATGAGTAGGAATGTTTTTGTA
AAACTTGCACTAATTTCTAGAAAAAGCTCTGCCACAATGTTATTGAGTGG
Found at i:43963608 original size:26 final size:27
Alignment explanation
Indices: 43963579--43963633 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
43963569 AAGATGACTA
43963579 TATACAAAATT-TTAATAAATTAAA-AT
1 TATACAAAATTATTAA-AAATTAAATAT
* *
43963605 TATATAAAATTATTAAATATTAAATAT
1 TATACAAAATTATTAAAAATTAAATAT
43963632 TA
1 TA
43963634 AAATAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 17 0.68
27 8 0.32
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (27 bp):
TATACAAAATTATTAAAAATTAAATAT
Found at i:43963624 original size:15 final size:15
Alignment explanation
Indices: 43963606--43963642 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
43963596 AATTAAAATT
43963606 ATATAAAATTATTAA
1 ATATAAAATTATTAA
*
43963621 ATATTAAA-TATTAA
1 ATATAAAATTATTAA
43963635 A-ATAAAAT
1 ATATAAAAT
43963643 AAAATAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
13 5 0.26
14 7 0.37
15 7 0.37
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATATAAAATTATTAA
Found at i:43968147 original size:40 final size:39
Alignment explanation
Indices: 43968073--43968158 Score: 104
Period size: 40 Copynumber: 2.2 Consensus size: 39
43968063 AGAATGCACA
43968073 CTAAAAATCGAGCATTAGCGGCGCTTAGCATAAAACGCCG
1 CTAAAAATCGAGCATTAGCGGCGCTTAG-ATAAAACGCCG
* * *
43968113 CTAAAGATCTAGCATTAGCGGCGCACTTTG-TAAAACGCCG
1 CTAAAAATCGAGCATTAGCGGCG--CTTAGATAAAACGCCG
43968153 -TAAAAA
1 CTAAAAA
43968159 GTCGGACTTG
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
39 5 0.12
40 31 0.77
42 4 0.10
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.20
Consensus pattern (39 bp):
CTAAAAATCGAGCATTAGCGGCGCTTAGATAAAACGCCG
Found at i:43968531 original size:99 final size:99
Alignment explanation
Indices: 43968376--43968755 Score: 553
Period size: 99 Copynumber: 3.7 Consensus size: 99
43968366 GCAGCATACA
* * *
43968376 ATCTTAAGGTATATTAGAATTAGTGGCGCTTATACAAAAACGCCGCTAAAGCATAGTATTAGCGG
1 ATCTTGAGGTATATTAGAATTAGAGGCGCTTATGCAAAAACGCCGCTAAAGCATAGTATTAGCGG
43968441 CGCCTTTTATATCTTAACCAAAACCCAACGTACG
66 CGCCTTTTATATCTTAACCAAAACCCAACGTACG
43968475 ATCTTGAGGTATATTAGAATTAGAGGCGCTTATGCAAAAACGCCGCTAAAGCATAGTATTAGCGG
1 ATCTTGAGGTATATTAGAATTAGAGGCGCTTATGCAAAAACGCCGCTAAAGCATAGTATTAGCGG
43968540 CGCCTTTTATATCTTAACCAAAACCCAACGTACG
66 CGCCTTTTATATCTTAACCAAAACCCAACGTACG
43968574 ATCTTGAGGTATATTAGAATTAGAGGCGCTTATGCAAAAACGCCGCTAAAGCATAGTATTAGCGG
1 ATCTTGAGGTATATTAGAATTAGAGGCGCTTATGCAAAAACGCCGCTAAAGCATAGTATTAGCGG
* * *
43968639 CGCCTTATAAAAGGCGCCACAAAATATCTTAACCAAAACCCAGCGTACG
66 CGCCTT-T-------------TAT-ATCTTAACCAAAACCCAACGTACG
* *
43968688 ATCTTGAGGTATATTAGAATTAGTGGCGCTTATGCAAAAACGCCGCTAAAGCACAGTATTAGCGG
1 ATCTTGAGGTATATTAGAATTAGAGGCGCTTATGCAAAAACGCCGCTAAAGCATAGTATTAGCGG
43968753 CGC
66 CGC
43968756 ACTATATTAA
Statistics
Matches: 258, Mismatches: 8, Indels: 15
0.92 0.03 0.05
Matches are distributed among these distances:
99 167 0.65
100 1 0.00
113 1 0.00
114 89 0.34
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (99 bp):
ATCTTGAGGTATATTAGAATTAGAGGCGCTTATGCAAAAACGCCGCTAAAGCATAGTATTAGCGG
CGCCTTTTATATCTTAACCAAAACCCAACGTACG
Found at i:43968748 original size:114 final size:114
Alignment explanation
Indices: 43968552--43969417 Score: 1266
Period size: 114 Copynumber: 7.6 Consensus size: 114
43968542 CCTTTTATAT
* * ** * * *
43968552 CTTAACCAAAACCCAACGTACGATCTTGAGGTATATTAGAATTAGAGGCGCTTATGCAAAAACGC
1 CTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGAAAAAACGC
* * * *
43968617 CGCTAAAGCATAGTATTAGCGGCGCCTTATAAAAGGCGCCACAAAATAT
66 CGCTAAAGCATAGTATTAGCGGCGCATTATAAAAAGCGCCGCAAAATAG
* ** * *
43968666 CTTAACCAAAACCCAGCGTACGATCTTGAGGTATATTAGAATTAGTGGCGCTTATGCAAAAACGC
1 CTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGAAAAAACGC
* * **
43968731 CGCTAAAGCACAGTATTAGCGGCGCACTATATTAAGCGCCGCAAAATAG
66 CGCTAAAGCATAGTATTAGCGGCGCATTATAAAAAGCGCCGCAAAATAG
43968780 CTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGAAAAAACGC
1 CTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGAAAAAACGC
* * *
43968845 CGCTAAACCATTGTATTAGCGGTGCATTATAAAAAGCGCCGCAAAATAG
66 CGCTAAAGCATAGTATTAGCGGCGCATTATAAAAAGCGCCGCAAAATAG
* *
43968894 CTTAACCAAAACACAGCGTTTGGTCTTGAGATATATTAGAATTAGTGGCGCTTATGAAAAAACGC
1 CTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGAAAAAACGC
* * *
43968959 CGCTAAACCATTGTATTAGCGGTGCATTATAAAAAGCGCCGCAAAATAG
66 CGCTAAAGCATAGTATTAGCGGCGCATTATAAAAAGCGCCGCAAAATAG
* * *
43969008 CTTAACCAAAACACAGCGTTTGGTCTTGAGATATATTAGAATTAGTGGCGCTTATGAAAAAACAC
1 CTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGAAAAAACGC
* *
43969073 CGCTAAATCACT-GTATTAGCGGCGCATTATAAAAAGCGCCGCAAAATAT
66 CGCTAAAGCA-TAGTATTAGCGGCGCATTATAAAAAGCGCCGCAAAATAG
* * *
43969122 CTTAACCAAAATGCAGCGTTTTGTCTTGAAGTATATTAGAATTAGTGGCGCTTATGAAAAAACGC
1 CTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGAAAAAACGC
* *
43969187 CGCTAAAGCTTAGTATTAGCGGCGCAATATAAAAAGCGCCGCAAAATAG
66 CGCTAAAGCATAGTATTAGCGGCGCATTATAAAAAGCGCCGCAAAATAG
* **
43969236 CTTAACCAAAATGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATTCAAAAACGC
1 CTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGAAAAAACGC
* * * * *
43969301 CGCTAAAGCACAGTATTAGCAGCTCCTTATAAAAAGCGCCGCAAAATAT
66 CGCTAAAGCATAGTATTAGCGGCGCATTATAAAAAGCGCCGCAAAATAG
* * * *
43969350 CTTAACCAAAACGCAGCGTTTGGTCTTAAGGTATATTAGAATTGGTGGCGCTTATGCAAAAGCGC
1 CTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGAAAAAACGC
43969415 CGC
66 CGC
43969418 AAAATTGTTA
Statistics
Matches: 696, Mismatches: 54, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
113 1 0.00
114 694 1.00
115 1 0.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.25
Consensus pattern (114 bp):
CTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGAAAAAACGC
CGCTAAAGCATAGTATTAGCGGCGCATTATAAAAAGCGCCGCAAAATAG
Found at i:43969984 original size:7 final size:7
Alignment explanation
Indices: 43969974--43970061 Score: 70
Period size: 7 Copynumber: 12.6 Consensus size: 7
43969964 TTAATTGATA
43969974 GGTTTAG
1 GGTTTAG
*
43969981 GGTTTAA
1 GGTTTAG
*
43969988 GGTTTAT
1 GGTTTAG
*
43969995 AGTTT-G
1 GGTTTAG
*
43970001 GGATTTGG
1 GG-TTTAG
*
43970009 GGTTTGG
1 GGTTTAG
43970016 GGTTTAG
1 GGTTTAG
*
43970023 GGTTTAA
1 GGTTTAG
*
43970030 GGTTTAT
1 GGTTTAG
* *
43970037 AGTTTGG
1 GGTTTAG
43970044 GGTTTAG
1 GGTTTAG
*
43970051 GGTTTAC
1 GGTTTAG
43970058 GGTT
1 GGTT
43970062 AAGGCTTGGA
Statistics
Matches: 65, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
6 1 0.02
7 61 0.94
8 3 0.05
ACGTcount: A:0.15, C:0.01, G:0.39, T:0.45
Consensus pattern (7 bp):
GGTTTAG
Found at i:43970025 original size:42 final size:42
Alignment explanation
Indices: 43969974--43970055 Score: 146
Period size: 42 Copynumber: 2.0 Consensus size: 42
43969964 TTAATTGATA
*
43969974 GGTTTAGGGTTTAAGGTTTATAGTTTGGGATTTGGGGTTTGG
1 GGTTTAGGGTTTAAGGTTTATAGTTTGGGATTTAGGGTTTGG
*
43970016 GGTTTAGGGTTTAAGGTTTATAGTTTGGGGTTTAGGGTTT
1 GGTTTAGGGTTTAAGGTTTATAGTTTGGGATTTAGGGTTT
43970056 ACGGTTAAGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.15, C:0.00, G:0.39, T:0.46
Consensus pattern (42 bp):
GGTTTAGGGTTTAAGGTTTATAGTTTGGGATTTAGGGTTTGG
Found at i:43970677 original size:72 final size:72
Alignment explanation
Indices: 43970596--43970823 Score: 230
Period size: 72 Copynumber: 3.1 Consensus size: 72
43970586 TTTGCTTTTG
43970596 GTGGCGCTTTTTTGTAAACGCCGCAAAAGTGTATTATGAGTTAAGAAACTGTGTCGTTTGGCATT
1 GTGGCGCTTTTTTGTAAACGCCGCAAAAGTGTATTATGAGTTAAGAAACTGTGTCGTTTGGCATT
43970661 GTCTGTA
66 GTCTGTA
** * ** * * *
43970668 GTGGCGCTTTCCT-TAAAGCGCCGCAAATA-TGTTTTATGTTTTACATAAACGGTGTCGTTT-TC
1 GTGGCGCTTTTTTGTAAA-CGCCGCAAA-AGTGTATTATGAGTTA-AGAAACTGTGTCGTTTGGC
* * *
43970730 -TCTATATAAGTT
63 AT-TGTCT--GTA
** * *
43970742 GTGGCATTTTTTTGTAAACGTCGCAAAAGTGTATTATGAGTTAAGAAACTGCGTCGTTTGGCATT
1 GTGGCGCTTTTTTGTAAACGCCGCAAAAGTGTATTATGAGTTAAGAAACTGTGTCGTTTGGCATT
*
43970807 GTCTATA
66 GTCTGTA
43970814 GTGGCGCTTT
1 GTGGCGCTTT
43970824 CCTTAAAGCG
Statistics
Matches: 117, Mismatches: 29, Indels: 20
0.70 0.17 0.12
Matches are distributed among these distances:
71 5 0.04
72 44 0.38
73 29 0.25
74 34 0.29
75 5 0.04
ACGTcount: A:0.23, C:0.15, G:0.24, T:0.38
Consensus pattern (72 bp):
GTGGCGCTTTTTTGTAAACGCCGCAAAAGTGTATTATGAGTTAAGAAACTGTGTCGTTTGGCATT
GTCTGTA
Found at i:43970851 original size:72 final size:72
Alignment explanation
Indices: 43970629--43970851 Score: 211
Period size: 72 Copynumber: 3.1 Consensus size: 72
43970619 CAAAAGTGTA
* *
43970629 TTATGAGTTAAGAAACTGTGTCGTTTGGCATTGTCTGTAGTGGCGCTTTCCTTAAAGCGCCGCAA
1 TTATGAGTTAAGAAACTGTGTCGTTTGGCATTGTCTATAGTGGCGCTTTCCTTAAAGCGTCGCAA
43970694 ATATGTT
66 ATATGTT
** * * * * * * ** **
43970701 TTATGTTTTACATAAACGGTGTCGTTT-TC-TCTATATAAGTTGTGGCATTTTTTTGTAAA-CGT
1 TTATGAGTTA-AGAAACTGTGTCGTTTGGCAT-TGTCT-A-TAGTGGCGCTTTCCT-TAAAGCGT
*
43970763 CGCAAA-AGTGTA
61 CGCAAATA-TGTT
* *
43970775 TTATGAGTTAAGAAACTGCGTCGTTTGGCATTGTCTATAGTGGCGCTTTCCTTAAAGCGTCACAA
1 TTATGAGTTAAGAAACTGTGTCGTTTGGCATTGTCTATAGTGGCGCTTTCCTTAAAGCGTCGCAA
43970840 ATATGTT
66 ATATGTT
43970847 TTATG
1 TTATG
43970852 TTTTACATAA
Statistics
Matches: 111, Mismatches: 30, Indels: 20
0.69 0.19 0.12
Matches are distributed among these distances:
71 5 0.05
72 38 0.34
73 30 0.27
74 33 0.30
75 5 0.05
ACGTcount: A:0.24, C:0.15, G:0.22, T:0.39
Consensus pattern (72 bp):
TTATGAGTTAAGAAACTGTGTCGTTTGGCATTGTCTATAGTGGCGCTTTCCTTAAAGCGTCGCAA
ATATGTT
Found at i:43970860 original size:146 final size:146
Alignment explanation
Indices: 43970603--43970899 Score: 531
Period size: 146 Copynumber: 2.0 Consensus size: 146
43970593 TTGGTGGCGC
* *
43970603 TTTTTTGTAAACGCCGCAAAAGTGTATTATGAGTTAAGAAACTGTGTCGTTTGGCATTGTCTGTA
1 TTTTTTGTAAACGCCGCAAAAGTGTATTATGAGTTAAGAAACTGCGTCGTTTGGCATTGTCTATA
* * *
43970668 GTGGCGCTTTCCTTAAAGCGCCGCAAATATGTTTTATGTTTTACATAAACGGTGTCGTTTTCTCT
66 GTGGCGCTTTCCTTAAAGCGCCACAAATATGTTTTATGTTTTACATAAACGGTGCCATTTTCTCT
43970733 ATATAAGTTGTGGCAT
131 ATATAAGTTGTGGCAT
*
43970749 TTTTTTGTAAACGTCGCAAAAGTGTATTATGAGTTAAGAAACTGCGTCGTTTGGCATTGTCTATA
1 TTTTTTGTAAACGCCGCAAAAGTGTATTATGAGTTAAGAAACTGCGTCGTTTGGCATTGTCTATA
*
43970814 GTGGCGCTTTCCTTAAAGCGTCACAAATATGTTTTATGTTTTACATAAACGGTGCCATTTTCTCT
66 GTGGCGCTTTCCTTAAAGCGCCACAAATATGTTTTATGTTTTACATAAACGGTGCCATTTTCTCT
43970879 ATATAAGTTGTGGCAT
131 ATATAAGTTGTGGCAT
43970895 TTTTT
1 TTTTT
43970900 AAAAACGCCA
Statistics
Matches: 144, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
146 144 1.00
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.40
Consensus pattern (146 bp):
TTTTTTGTAAACGCCGCAAAAGTGTATTATGAGTTAAGAAACTGCGTCGTTTGGCATTGTCTATA
GTGGCGCTTTCCTTAAAGCGCCACAAATATGTTTTATGTTTTACATAAACGGTGCCATTTTCTCT
ATATAAGTTGTGGCAT
Found at i:43971123 original size:18 final size:18
Alignment explanation
Indices: 43971090--43971124 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
43971080 ATCTCCCCCA
*
43971090 AATCCCTAAAATTTCCCT
1 AATCCCTAAAAGTTCCCT
*
43971108 AATCCCTAACAGTTCCC
1 AATCCCTAAAAGTTCCC
43971125 CAAACCCGAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.37, G:0.03, T:0.29
Consensus pattern (18 bp):
AATCCCTAAAAGTTCCCT
Found at i:43972826 original size:20 final size:20
Alignment explanation
Indices: 43972798--43973051 Score: 152
Period size: 20 Copynumber: 12.7 Consensus size: 20
43972788 TTCTAATTAC
*
43972798 ATAAAATTAAGATAACTTAT
1 ATAATATTAAGATAACTTAT
43972818 ATAATATTAAGACT-ACTTAT
1 ATAATATTAAGA-TAACTTAT
* *
43972838 ATAATATTAAGATAAAATTTCT
1 ATAATATTAAGAT--AACTTAT
* * ** *
43972860 AATCACACATCAATTTCTAA-TTAC
1 -AT-A-ATATTAA--GATAACTTAT
*
43972884 ATAAAATTAAGATAACTTAT
1 ATAATATTAAGATAACTTAT
43972904 ATAATATTAAGACT-ACTTAT
1 ATAATATTAAGA-TAACTTAT
*
43972924 ATAATATTAAGATAAAATT-T
1 ATAATATTAAGAT-AACTTAT
* *
43972944 CT-A-ATT-ACATAACTTAT
1 ATAATATTAAGATAACTTAT
*
43972961 ATAATATTAAGGTAACTTAT
1 ATAATATTAAGATAACTTAT
* *
43972981 ATAATATTAGGATAAAATT-T
1 ATAATATTAAGAT-AACTTAT
* * **
43973001 CT-A-ATT-ACATAACTCGT
1 ATAATATTAAGATAACTTAT
*
43973018 TTAATATTAAGATAACTTAT
1 ATAATATTAAGATAACTTAT
43973038 ATAATATTAAGATA
1 ATAATATTAAGATA
43973052 CAATTTCTAA
Statistics
Matches: 177, Mismatches: 35, Indels: 44
0.69 0.14 0.17
Matches are distributed among these distances:
16 7 0.04
17 9 0.05
18 8 0.05
19 13 0.07
20 106 0.60
21 14 0.08
22 5 0.03
23 4 0.02
24 3 0.02
25 7 0.04
27 1 0.01
ACGTcount: A:0.48, C:0.09, G:0.05, T:0.39
Consensus pattern (20 bp):
ATAATATTAAGATAACTTAT
Found at i:43972891 original size:86 final size:86
Alignment explanation
Indices: 43972746--43972948 Score: 406
Period size: 86 Copynumber: 2.4 Consensus size: 86
43972736 ACACTTCATA
43972746 ACTTATATAATATTAAGATAAAATTTCTAATCACACATCAATTTCTAATTACATAAAATTAAGAT
1 ACTTATATAATATTAAGATAAAATTTCTAATCACACATCAATTTCTAATTACATAAAATTAAGAT
43972811 AACTTATATAATATTAAGACT
66 AACTTATATAATATTAAGACT
43972832 ACTTATATAATATTAAGATAAAATTTCTAATCACACATCAATTTCTAATTACATAAAATTAAGAT
1 ACTTATATAATATTAAGATAAAATTTCTAATCACACATCAATTTCTAATTACATAAAATTAAGAT
43972897 AACTTATATAATATTAAGACT
66 AACTTATATAATATTAAGACT
43972918 ACTTATATAATATTAAGATAAAATTTCTAAT
1 ACTTATATAATATTAAGATAAAATTTCTAAT
43972949 TACATAACTT
Statistics
Matches: 117, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 117 1.00
ACGTcount: A:0.48, C:0.11, G:0.03, T:0.38
Consensus pattern (86 bp):
ACTTATATAATATTAAGATAAAATTTCTAATCACACATCAATTTCTAATTACATAAAATTAAGAT
AACTTATATAATATTAAGACT
Found at i:43973072 original size:57 final size:57
Alignment explanation
Indices: 43972905--43973084 Score: 290
Period size: 57 Copynumber: 3.2 Consensus size: 57
43972895 ATAACTTATA
** *
43972905 TAATATTAAGACT-ACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTATA
1 TAATATTAAGA-TAACTTATATAATATTAAGATAAAATTTCTAATTACATAACTCGTT
* *
43972962 TAATATTAAGGTAACTTATATAATATTAGGATAAAATTTCTAATTACATAACTCGTT
1 TAATATTAAGATAACTTATATAATATTAAGATAAAATTTCTAATTACATAACTCGTT
*
43973019 TAATATTAAGATAACTTATATAATATTAAGATACAATTTCTAATTACATAACTCGTT
1 TAATATTAAGATAACTTATATAATATTAAGATAAAATTTCTAATTACATAACTCGTT
43973076 TAATATTAA
1 TAATATTAA
43973085 TTTCTAAGTA
Statistics
Matches: 114, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
56 1 0.01
57 113 0.99
ACGTcount: A:0.45, C:0.09, G:0.06, T:0.41
Consensus pattern (57 bp):
TAATATTAAGATAACTTATATAATATTAAGATAAAATTTCTAATTACATAACTCGTT
Found at i:43973169 original size:87 final size:84
Alignment explanation
Indices: 43972996--43973189 Score: 214
Period size: 87 Copynumber: 2.2 Consensus size: 84
43972986 ATTAGGATAA
* * * *
43972996 AATTTCTAATTACATAACTCGTT-TAATATTAAGATAACTTATATAATATTAAGATACAATTTCT
1 AATTTCTAATAACATAA-T--TTCTAAT-TTTAGATAACTTATACAATATTAAGATAAAATTTCT
*
43973060 AATTACATAACTCGTTTAATATT
62 AATTACATAACTCATTTAATATT
43973083 AATTTCTAAGTACACATCAATTTCTAATTTTAGATAACTTATACAATATTAAGATAAAATTT-TG
1 AATTTCTAA-TA-ACAT-AATTTCTAATTTTAGATAACTTATACAATATTAAGATAAAATTTCT-
*
43973147 AATTACATAACTTATATT-ATATT
62 AATTACATAACTCAT-TTAATATT
**
43973170 CCTTTCTAATAACATAATTT
1 AATTTCTAATAACATAATTT
43973190 ACTTAATACA
Statistics
Matches: 93, Mismatches: 8, Indels: 15
0.80 0.07 0.13
Matches are distributed among these distances:
84 5 0.05
85 4 0.04
86 3 0.03
87 67 0.72
88 7 0.08
89 5 0.05
90 2 0.02
ACGTcount: A:0.41, C:0.12, G:0.04, T:0.43
Consensus pattern (84 bp):
AATTTCTAATAACATAATTTCTAATTTTAGATAACTTATACAATATTAAGATAAAATTTCTAATT
ACATAACTCATTTAATATT
Found at i:43978700 original size:21 final size:21
Alignment explanation
Indices: 43978670--43978720 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
43978660 CTACAACTTA
* * *
43978670 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAAAGGCGGCAACGAGAG
*
43978691 AAGCAAAGGCTGCAACGAGAG
1 AAGCAAAGGCGGCAACGAGAG
43978712 AAGCAAAGG
1 AAGCAAAGG
43978721 TTCAAAAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.39, C:0.18, G:0.41, T:0.02
Consensus pattern (21 bp):
AAGCAAAGGCGGCAACGAGAG
Found at i:43979433 original size:41 final size:41
Alignment explanation
Indices: 43979334--43979452 Score: 157
Period size: 41 Copynumber: 2.9 Consensus size: 41
43979324 TTTGTTGTAA
* *
43979334 AAGCACCGCTAAAGAACATGACCCTTAGCGGCGTGTTTCTTG
1 AAGCGCCGCTAAAGAACATGACCTTTAGCGGCGT-TTTCTTG
* * * * *
43979376 AAGCGCCACTAAAGAACATGATCTTTAGCGTCGTTTTTTTT
1 AAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTTCTTG
*
43979417 AAGCGCCGCTAAAGAACAAGACCTTTAGCGGCGTTT
1 AAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTT
43979453 ATTTCTGTAA
Statistics
Matches: 66, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
41 37 0.56
42 29 0.44
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.27
Consensus pattern (41 bp):
AAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTTCTTG
Found at i:43981056 original size:86 final size:88
Alignment explanation
Indices: 43980931--43981104 Score: 316
Period size: 86 Copynumber: 2.0 Consensus size: 88
43980921 ATACATTATA
43980931 ATTTTTAAAAAGGGTAATATATATACATATAATTCAATAAACTTATAGCCATAATACACATAAAA
1 ATTTTTAAAAAGGGTAATATATATACATATAATTCAATAAACTTATAGCCATAATACACATAAAA
*
43980996 CGTAAAATAAAATGGAAAATACT
66 CGTAAAATAAAACGGAAAATACT
*
43981019 ATTTTTGAAAAGGGT-A-ATATATACATATAATTCAATAAACTTATAGCCATAATACACATAAAA
1 ATTTTTAAAAAGGGTAATATATATACATATAATTCAATAAACTTATAGCCATAATACACATAAAA
43981082 CGTAAAATAAAACGGAAAATACT
66 CGTAAAATAAAACGGAAAATACT
43981105 CAGCTTAATC
Statistics
Matches: 84, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
86 69 0.82
87 1 0.01
88 14 0.17
ACGTcount: A:0.52, C:0.11, G:0.09, T:0.29
Consensus pattern (88 bp):
ATTTTTAAAAAGGGTAATATATATACATATAATTCAATAAACTTATAGCCATAATACACATAAAA
CGTAAAATAAAACGGAAAATACT
Done.