Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 144 of 144
Found at i:44636815 original size:11 final size:11
Alignment explanation
Indices: 44636801--44636827 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
44636791 AAAAATCAAT
44636801 ACAAAAGTTTC
1 ACAAAAGTTTC
44636812 ACAAAAGTTTC
1 ACAAAAGTTTC
44636823 ACAAA
1 ACAAA
44636828 CTAATTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.22
Consensus pattern (11 bp):
ACAAAAGTTTC
Found at i:44641112 original size:40 final size:40
Alignment explanation
Indices: 44641057--44641213 Score: 226
Period size: 40 Copynumber: 3.9 Consensus size: 40
44641047 GCATGAGCAT
* *
44641057 TTGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAG
* *
44641097 TTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAG
*
44641137 TTGATATATCCGAGCTAAGACCCGAAGGC-ATTCGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAG
* * *
44641177 TTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGC
44641214 TTGCGGTTAT
Statistics
Matches: 104, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
39 3 0.03
40 98 0.94
41 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (40 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAG
Found at i:44641158 original size:80 final size:80
Alignment explanation
Indices: 44641057--44641209 Score: 252
Period size: 80 Copynumber: 1.9 Consensus size: 80
44641047 GCATGAGCAT
* * * *
44641057 TTGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGA
1 TTGATATATCCGAGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATACCCGGGCTAAGACCCGA
44641122 AGGCAATTATGCAAG
66 AGGCAATTATGCAAG
* *
44641137 TTGATATATCCGAGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATACCCGGGTTAAGACCCGA
1 TTGATATATCCGAGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATACCCGGGCTAAGACCCGA
44641202 AGGCAATT
66 AGGCAATT
44641210 GTGCTTGCGG
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
80 67 1.00
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (80 bp):
TTGATATATCCGAGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATACCCGGGCTAAGACCCGA
AGGCAATTATGCAAG
Found at i:44641225 original size:80 final size:79
Alignment explanation
Indices: 44641059--44641233 Score: 233
Period size: 80 Copynumber: 2.2 Consensus size: 79
44641049 ATGAGCATTT
* * *
44641059 GATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAG
1 GATATATC-CGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATACCCGGGCTAAGACCCGAAG
**
44641124 GCAATTATGCAAGTT
65 GCAATTATGCAAGCG
* *
44641139 GATATATCCGAGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAG
1 GATATATCCG-GCTAAGACCCGAAGGCATTCGTGCGAGTTGATATACCCGGGCTAAGACCCGAAG
* **
44641204 GCAATTGTGCTTGCG
65 GCAATTATGCAAGCG
*
44641219 GTTATATCCGGCTAA
1 GATATATCCGGCTAA
44641234 ATTTCGAAGA
Statistics
Matches: 83, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
79 6 0.07
80 77 0.93
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
GATATATCCGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGG
CAATTATGCAAGCG
Found at i:44643053 original size:16 final size:16
Alignment explanation
Indices: 44643032--44643063 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
44643022 TTTTGTGTAA
*
44643032 TGGGCTGTTAGTTTAG
1 TGGGCTGGTAGTTTAG
44643048 TGGGCTGGTAGTTTAG
1 TGGGCTGGTAGTTTAG
44643064 GTTATTGGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.06, G:0.41, T:0.41
Consensus pattern (16 bp):
TGGGCTGGTAGTTTAG
Found at i:44644013 original size:72 final size:72
Alignment explanation
Indices: 44643778--44644030 Score: 391
Period size: 73 Copynumber: 3.5 Consensus size: 72
44643768 ACATGTGAAC
* *
44643778 TGAGGCTCAACTCACTTT-TCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCT
1 TGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
* *
44643842 CAGCGTGTCC
63 CAACGTGTCT
* *
44643852 CGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCA
44643917 ACGTGTCT
65 ACGTGTCT
44643925 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
*
44643990 TGTGTCT
66 CGTGTCT
*
44643997 TGAGGCTCAACTCATTTCTCGCAATATAAGTTGA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
44644031 TTCTTTCAAA
Statistics
Matches: 167, Mismatches: 10, Indels: 6
0.91 0.05 0.03
Matches are distributed among these distances:
72 67 0.40
73 71 0.43
74 29 0.17
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (72 bp):
TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
CGTGTCT
Found at i:44644117 original size:88 final size:87
Alignment explanation
Indices: 44643963--44644208 Score: 289
Period size: 88 Copynumber: 2.8 Consensus size: 87
44643953 AGTTGAATTT
* ** * ** *
44643963 TGAAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGT
1 TGAAAACAGAAATTGAAAATACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
44644028 TGA-TTCTTTCAAAAACATAATAA
66 TGATTTCTTTCAAAAACA-AA-AA
* *
44644051 TGAAAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TGAAAACAGAAATTGAAAATACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
44644116 TGATTTTTTTGAAAAACAGAAA
66 TGATTTCTTTCAAAAACAAAAA
* **
44644138 TCAAAAGGC-TTAATTGAAAATACCTCGGCGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
1 TGAAAA--CAGAAATTGAAAATACCTC-G-GTGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
44644202 GAGTTGA
62 GAGTTGA
44644209 AATTAAAACA
Statistics
Matches: 136, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
87 7 0.05
88 74 0.54
89 14 0.10
90 41 0.30
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (87 bp):
TGAAAACAGAAATTGAAAATACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTCTTTCAAAAACAAAAA
Found at i:44644730 original size:75 final size:74
Alignment explanation
Indices: 44644430--44644766 Score: 421
Period size: 72 Copynumber: 4.5 Consensus size: 74
44644420 AGTGGGTAAT
* * *
44644430 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAACAGAAATTGAAAATACT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAACAGAAATTGAAAATACC
*
44644495 TCAGCATGTGAAC
65 TCAGC--GTG-TC
* *
44644508 C-GAGACTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
* *
44644572 CAACGTGTT
66 CAGCGTGTC
* ** * * *
44644581 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
44644644 CAGCGTGTC
66 CAGCGTGTC
* ** *
44644653 CTGAGGTTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATT-AAAATTAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA-AACAGAAATTGAAAA-TAC
44644717 CTCAGCGTGTC
64 CTCAGCGTGTC
*
44644728 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
44644767 GAAAAACAAA
Statistics
Matches: 228, Mismatches: 26, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
72 65 0.29
74 42 0.18
75 59 0.26
76 31 0.14
77 30 0.13
78 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (74 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
CAGCGTGTC
Found at i:44644736 original size:147 final size:147
Alignment explanation
Indices: 44644430--44644784 Score: 423
Period size: 147 Copynumber: 2.4 Consensus size: 147
44644420 AGTGGGTAAT
* * * *
44644430 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAACAGAAATTGAAAATACT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---ATTTTGAAAACAGAAATTGAAAATACC
44644495 TCAGCATGTGAACCGAGACTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAA
63 TCAGCA-GTGAACCGAGACTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAA
*
44644560 TTGAAAATACCTCAACGTGTT
127 TTGAAAATACCTCAACGTGTC
* ** * *
44644581 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCA
* ** ** * *
44644646 GC-GTG-TCCTGAGGTTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATT
66 GCAGTGAACC-GAGACTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAA-AACAGAAATT
*
44644709 -AAAATTACCTCAGCGTGTC
129 GAAAA-TACCTCAACGTGTC
* *
44644728 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTG-ATTTTGAAAAACAAAAATT-AAAA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTG-AAAACAGAAATTGAAAA
44644785 GGCTTAACTC
Statistics
Matches: 175, Mismatches: 25, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
145 2 0.01
146 53 0.30
147 62 0.35
148 28 0.16
151 30 0.17
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (147 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCA
GCAGTGAACCGAGACTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGA
AAATACCTCAACGTGTC
Found at i:44644926 original size:70 final size:71
Alignment explanation
Indices: 44644784--44644958 Score: 214
Period size: 70 Copynumber: 2.5 Consensus size: 71
44644774 AAAAATTAAA
* * * * * *
44644784 AGGCTTAACTCACCTCTCGCAATATGAG-TCA-ATTTAAAACATAAACTAAAAATACCTCGACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACAAAAACTAAAAATACCTCAACGT
44644847 GCCCCG
66 GCCCCG
* *
44644853 AGGCTCAACTCACTTCTCGCAATATAAGTTGATTTTTAAAA-AAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACAAAAACTAAAAATACCTCAACGT
* **
44644917 GTCTTG
66 GCCCCG
44644923 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
44644959 CCTTGGAAAG
Statistics
Matches: 91, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
69 26 0.29
70 58 0.64
71 7 0.08
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (71 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACAAAAACTAAAAATACCTCAACGT
GCCCCG
Found at i:44678970 original size:25 final size:25
Alignment explanation
Indices: 44678920--44678970 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
44678910 CTCTATGCAA
*
44678920 TTTTAGTATTTGTATTTTAATTTTT
1 TTTTAGTATTTGTATTTTAATATTT
*
44678945 TTTTAGTTTTTGTATTTTTAA-ATTT
1 TTTTAGTATTTGTA-TTTTAATATTT
44678970 T
1 T
44678971 GAAAATTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.20, C:0.00, G:0.08, T:0.73
Consensus pattern (25 bp):
TTTTAGTATTTGTATTTTAATATTT
Found at i:44682374 original size:22 final size:22
Alignment explanation
Indices: 44682342--44682385 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
44682332 GCAATACCAA
* *
44682342 CTACAGTTGCAAATGTAAGAGC
1 CTACAGCTGCAAATGCAAGAGC
44682364 CTACAGCTGCAAATGCAAGAGC
1 CTACAGCTGCAAATGCAAGAGC
44682386 GGTTAGCCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (22 bp):
CTACAGCTGCAAATGCAAGAGC
Found at i:44684130 original size:16 final size:16
Alignment explanation
Indices: 44684119--44684152 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
44684109 TCAAGAAAAT
44684119 AAAAAAAGAAGAAGAA
1 AAAAAAAGAAGAAGAA
*
44684135 AAGAAAAGAA-AAGAA
1 AAAAAAAGAAGAAGAA
44684150 AAA
1 AAA
44684153 GGAGAGGCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (16 bp):
AAAAAAAGAAGAAGAA
Found at i:44684138 original size:5 final size:5
Alignment explanation
Indices: 44684122--44684151 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
44684112 AGAAAATAAA
44684122 AAAAG AAGAAG AAAAG AAAAG AAAAG AAAA
1 AAAAG AA-AAG AAAAG AAAAG AAAAG AAAA
44684152 AGGAGAGGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:44685569 original size:89 final size:89
Alignment explanation
Indices: 44685464--44686126 Score: 805
Period size: 89 Copynumber: 7.5 Consensus size: 89
44685454 GACACTAGCA
* * * * * *
44685464 TTGCCTTCGTGTACTGACAGTGAAGTAGATCGAAGACACCAACCTTGCCTTTATGTACTGACAGC
1 TTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTTTCTGTACTGACAGC
* *
44685529 AGAGCAAACTGAAGATAGCAGATC
66 GGAGCAGACTGAAGATAGCAGATC
* * * * **
44685553 TTGCCTTCTTGTACTGACAGCGAAGTAGATCAAAGACACCAGCCTTACCTTCCTGTACTGACAAT
1 TTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTTTCTGTACTGACAGC
*
44685618 GGAGTAGACTGAAGATAGCAGATC
66 GGAGCAGACTGAAGATAGCAGATC
* * * *
44685642 TTGCCTTCCTGTACTGATAGCGAAGCAGATCGAATG-CACCAGCCTTGCCTTCCTGTACTGATAG
1 TTGCCTTCCTGTACTGACAGCGAAGCAGATC-AAAGACACCAGCCTTGCCTTTCTGTACTGACAG
*
44685706 CGGAGCAGACTGAAGATAGTAGATC
65 CGGAGCAGACTGAAGATAGCAGATC
* * *
44685731 TTACCTTCTTGTACTGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTTCCTGTACTGACAGC
1 TTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTTTCTGTACTGACAGC
*
44685796 AGAGCAGACTGAAGATAGCAGATC
66 GGAGCAGACTGAAGATAGCAGATC
* * *
44685820 TTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGACACTAGCCTTG-CTTTCTTGTACTGACAG
1 TTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTTTC-TGTACTGACAG
*
44685884 CGGAGCAGACTGAAGGTAGCAGATC
65 CGGAGCAGACTGAAGATAGCAGATC
* **
44685909 TTGCCTTCCTGTACTGACAGCGAAACAGATCAAAGACACCAGTTTTGCCTTTCTGTACTGACAGC
1 TTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTTTCTGTACTGACAGC
* * *
44685974 GGAGCAGAGTAAAGATAACAGATC
66 GGAGCAGACTGAAGATAGCAGATC
* * ** * * * * * ** *
44685998 TCGCCTTCCTATACAAACAACGAAGAAGATCGAAGACACTAGTCTTGCCTCCCTAAGT-TTG-CA
1 TTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTTTCT--GTACTGACA
* *
44686061 GTGAAGCAGACTGAAGATAGCAGATC
64 GCGGAGCAGACTGAAGATAGCAGATC
* *
44686087 TTGCCTTCTTGTACT-ACAGCGAAACAGATCAAAGACACCA
1 TTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACACCA
44686127 TAGTTTGCAG
Statistics
Matches: 494, Mismatches: 74, Indels: 13
0.85 0.13 0.02
Matches are distributed among these distances:
88 27 0.05
89 455 0.92
90 10 0.02
91 2 0.00
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.23
Consensus pattern (89 bp):
TTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTTTCTGTACTGACAGC
GGAGCAGACTGAAGATAGCAGATC
Found at i:44686591 original size:94 final size:94
Alignment explanation
Indices: 44686343--44686573 Score: 293
Period size: 94 Copynumber: 2.5 Consensus size: 94
44686333 ATACAAATCC
** * * ** *
44686343 TATCTCCCTGAAGTTACAGTAGAGCAGATTAAAACTATAAATCCTATACCTCTGAAGTTACAGTA
1 TATCTCCCAAAAGTTACAGTAGAGCAGACTAAAGCTACGAATCCTATACCTCTGAAGTTGCAGTA
*
44686408 GGTTGGATTAAATTTACCATGACAAGTCT
66 GGTCGGATTAAATTTACCATGACAAGTCT
* * * * *
44686437 TATCTCCCAAAAGTTGCAGTAGAGTATACTGAAGCTACTAATCCTATACCTCTGAAGTTGCAGTA
1 TATCTCCCAAAAGTTACAGTAGAGCAGACTAAAGCTACGAATCCTATACCTCTGAAGTTGCAGTA
44686502 GGTCGGATTAAATTTACCATGACAAGTCT
66 GGTCGGATTAAATTTACCATGACAAGTCT
** * *
44686531 TATCTCCCTGACGTTACAGTGGAGCAGACTAAAG-TCACGAATC
1 TATCTCCCAAAAGTTACAGTAGAGCAGACTAAAGCT-ACGAATC
44686574 TCGTCCCTTT
Statistics
Matches: 115, Mismatches: 21, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
93 1 0.01
94 114 0.99
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (94 bp):
TATCTCCCAAAAGTTACAGTAGAGCAGACTAAAGCTACGAATCCTATACCTCTGAAGTTGCAGTA
GGTCGGATTAAATTTACCATGACAAGTCT
Found at i:44693382 original size:55 final size:53
Alignment explanation
Indices: 44693321--44693496 Score: 201
Period size: 55 Copynumber: 3.2 Consensus size: 53
44693311 GAGATTGGCG
* *
44693321 CTAAGTGTGCGGGTTTAAATTGTGCAGCACTAAGTGTGCGAATTGACATGTAGCA
1 CTAAGTGTGCGAGTTT-AATTGTG-AGCACTAAGTGTGCGAGTTGACATGTAGCA
*
44693376 CTAAGTGTGCGAGTTTGACTATGT-AGCACTAAGTGTGCGAGTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTT-AAT-TGTGAGCACTAAGTGTGCGAGTTGAC-ATGTAGCA
* * * * *
44693431 CTAAGTGTGCGAGTATGATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAATTGTG-AGCACTAAGTGTGCGAGTTGA-CATGTAGCA
*
44693486 CTGAGTGTGCG
1 CTAAGTGTGCG
44693497 GACTTAATAA
Statistics
Matches: 105, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
53 2 0.02
54 22 0.21
55 78 0.74
56 3 0.03
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.31
Consensus pattern (53 bp):
CTAAGTGTGCGAGTTTAATTGTGAGCACTAAGTGTGCGAGTTGACATGTAGCA
Found at i:44693420 original size:27 final size:27
Alignment explanation
Indices: 44693346--44693496 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
44693336 TAAATTGTGC
*
44693346 AGCACTAAGTGTGCGAATTGAC-ATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
44693372 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
44693400 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
44693427 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
44693455 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
44693482 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
44693497 GACTTAATAA
Statistics
Matches: 118, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
26 16 0.14
27 55 0.47
28 47 0.40
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:44705996 original size:11 final size:10
Alignment explanation
Indices: 44705971--44706031 Score: 54
Period size: 10 Copynumber: 6.1 Consensus size: 10
44705961 ACCAATAAAA
44705971 TAAA-TGAGC
1 TAAATTGAGC
*
44705980 TGAATTGTAGC
1 TAAATTG-AGC
44705991 TAAATTGAGC
1 TAAATTGAGC
**
44706001 TCGATTGAGC
1 TAAATTGAGC
44706011 TGAAA-TGAGC
1 T-AAATTGAGC
*
44706021 TCAATTGAGC
1 TAAATTGAGC
44706031 T
1 T
44706032 GGTCGGAGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
9 5 0.12
10 26 0.63
11 10 0.24
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.30
Consensus pattern (10 bp):
TAAATTGAGC
Found at i:44706032 original size:20 final size:20
Alignment explanation
Indices: 44705972--44706032 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
44705962 CCAATAAAAT
*
44705972 AAATGAGCTGAATTGTAGCT-
1 AAATGAGCTCAATTG-AGCTG
*
44705992 AAATTGAGCTCGATTGAGCTG
1 AAA-TGAGCTCAATTGAGCTG
44706013 AAATGAGCTCAATTGAGCTG
1 AAATGAGCTCAATTGAGCTG
44706033 GTCGGAGTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (20 bp):
AAATGAGCTCAATTGAGCTG
Found at i:44707988 original size:23 final size:22
Alignment explanation
Indices: 44707936--44707988 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
44707926 TCCACGTCTT
*
44707936 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
44707958 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
44707981 TTTCTTTT
1 TTTCTTTT
44707989 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:44709092 original size:10 final size:10
Alignment explanation
Indices: 44709068--44709116 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
44709058 AGCTCGTTTC
*
44709068 CAGCTCACTT
1 CAGCTCAATT
* *
44709078 GAGCTCAAGT
1 CAGCTCAATT
44709088 CAGCTC-ATT
1 CAGCTCAATT
44709097 CGAGCTCAATT
1 C-AGCTCAATT
44709108 CAGCTCAAT
1 CAGCTCAAT
44709117 CTTAACCCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
9 3 0.09
10 25 0.78
11 4 0.12
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.27
Consensus pattern (10 bp):
CAGCTCAATT
Found at i:44709093 original size:20 final size:20
Alignment explanation
Indices: 44709068--44709114 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
44709058 AGCTCGTTTC
44709068 CAGCTCACTT-GAGCTCAAGT
1 CAGCTCA-TTCGAGCTCAAGT
*
44709088 CAGCTCATTCGAGCTCAATT
1 CAGCTCATTCGAGCTCAAGT
44709108 CAGCTCA
1 CAGCTCA
44709115 ATCTTAACCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 2 0.08
20 23 0.92
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (20 bp):
CAGCTCATTCGAGCTCAAGT
Found at i:44711750 original size:22 final size:23
Alignment explanation
Indices: 44711725--44711784 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
44711715 TGGACTGAAT
44711725 ATAAAAATTTAAACTAAAT-AAA
1 ATAAAAATTTAAACTAAATAAAA
*
44711747 ATAAATAA-ATAAA-TAAATAAAA
1 ATAAA-AATTTAAACTAAATAAAA
*
44711769 ATAAAACTTTACAACT
1 ATAAAAATTTA-AACT
44711785 TGGGCCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 6 0.20
22 19 0.63
23 4 0.13
24 1 0.03
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAAAATTTAAACTAAATAAAA
Found at i:44711752 original size:4 final size:4
Alignment explanation
Indices: 44711734--44711767 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
44711724 TATAAAAATT
44711734 TAAA CTAAA TAAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA TAAA
44711768 AATAAAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:44718386 original size:64 final size:64
Alignment explanation
Indices: 44718313--44718436 Score: 212
Period size: 64 Copynumber: 1.9 Consensus size: 64
44718303 TTGAGTTCGA
*
44718313 TTTTTGATGATTTTTACGTGTTTGAGATCATTGCTTTGTATTCTAGCTAGCCCATGCTTTTTGG
1 TTTTTGATGATTTTTACATGTTTGAGATCATTGCTTTGTATTCTAGCTAGCCCATGCTTTTTGG
* * *
44718377 TTTTTGATGATTTTTACATTTTTGAGATCGTTGCTTTGTATTCTAGCTAGTCCATGCTTT
1 TTTTTGATGATTTTTACATGTTTGAGATCATTGCTTTGTATTCTAGCTAGCCCATGCTTT
44718437 AATTTTCGAA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.16, C:0.14, G:0.19, T:0.52
Consensus pattern (64 bp):
TTTTTGATGATTTTTACATGTTTGAGATCATTGCTTTGTATTCTAGCTAGCCCATGCTTTTTGG
Found at i:44718703 original size:13 final size:13
Alignment explanation
Indices: 44718685--44718712 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
44718675 TTTAATTAAA
44718685 TTATGTGTATTTT
1 TTATGTGTATTTT
44718698 TTATGTGTATTTT
1 TTATGTGTATTTT
44718711 TT
1 TT
44718713 GTTGTTTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.71
Consensus pattern (13 bp):
TTATGTGTATTTT
Found at i:44719214 original size:27 final size:26
Alignment explanation
Indices: 44719172--44719225 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
44719162 AGAGATTTTG
* *
44719172 TGTAAGATCATGCCTGGGATATTGGCA
1 TGTAAGACCATACCTGGGATA-TGGCA
44719199 TGTAAGACCATACCTGGGATATGGCA
1 TGTAAGACCATACCTGGGATATGGCA
44719225 T
1 T
44719226 TGTTTGTGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 6 0.24
27 19 0.76
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
TGTAAGACCATACCTGGGATATGGCA
Found at i:44743514 original size:26 final size:26
Alignment explanation
Indices: 44743485--44743545 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 26
44743475 TCTCATTCCT
44743485 ATTTTACTCCC-AATAAAATTTTGA-A
1 ATTTTAC-CCCTAATAAAATTTTGACA
*
44743510 GATTTTACCCCTATTAAAATTTTGACA
1 -ATTTTACCCCTAATAAAATTTTGACA
44743537 ATTTTACCC
1 ATTTTACCC
44743546 ATGGTAAGAT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 3 0.09
26 28 0.88
27 1 0.03
ACGTcount: A:0.34, C:0.20, G:0.05, T:0.41
Consensus pattern (26 bp):
ATTTTACCCCTAATAAAATTTTGACA
Found at i:44743557 original size:26 final size:26
Alignment explanation
Indices: 44743498--44743558 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
44743488 TTACTCCCAA
* *
44743498 TAAAATTTTGAAGATTTTACCCCTAT
1 TAAAATTTTGAAGATTTTACCCATAG
*
44743524 TAAAATTTTGACA-ATTTTACCCATGG
1 TAAAATTTTGA-AGATTTTACCCATAG
*
44743550 TAAGATTTT
1 TAAAATTTT
44743559 AAAAAAAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 29 0.97
27 1 0.03
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.43
Consensus pattern (26 bp):
TAAAATTTTGAAGATTTTACCCATAG
Found at i:44754204 original size:23 final size:23
Alignment explanation
Indices: 44754174--44754222 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
44754164 AAACAGTAAT
*
44754174 TATTTTAAAAATTCATCTTCTTC
1 TATTTTAAAAATTCATCTTCTCC
*
44754197 TATTTTAAAAATTCGTCTTCTCC
1 TATTTTAAAAATTCATCTTCTCC
44754220 TAT
1 TAT
44754223 CTAGCAGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.02, T:0.51
Consensus pattern (23 bp):
TATTTTAAAAATTCATCTTCTCC
Found at i:44754690 original size:26 final size:26
Alignment explanation
Indices: 44754651--44754705 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
44754641 AACACACCAA
* *
44754651 TATCATAGCAAAGCTACCAGTAATAG
1 TATCACAGCAAAGCTACCAGTAACAG
* *
44754677 TATCACAGCGAAGCTGCCAGTAACAG
1 TATCACAGCAAAGCTACCAGTAACAG
44754703 TAT
1 TAT
44754706 ATGTGGCAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.22
Consensus pattern (26 bp):
TATCACAGCAAAGCTACCAGTAACAG
Found at i:44754918 original size:27 final size:27
Alignment explanation
Indices: 44754888--44754946 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
44754878 ATCTCCTAGA
44754888 GGTATAACAGTCATTTTACCCTATGGG
1 GGTATAACAGTCATTTTACCCTATGGG
** *
44754915 GGTATTTCGGTCATTTTACCCTATGGG
1 GGTATAACAGTCATTTTACCCTATGGG
44754942 GGTAT
1 GGTAT
44754947 TTCGATAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.20, C:0.17, G:0.25, T:0.37
Consensus pattern (27 bp):
GGTATAACAGTCATTTTACCCTATGGG
Found at i:44754947 original size:27 final size:27
Alignment explanation
Indices: 44754897--44755001 Score: 142
Period size: 27 Copynumber: 4.0 Consensus size: 27
44754887 AGGTATAACA
44754897 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
44754924 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
44754951 AT-AATTTACCCTAT-GGGGCATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
44754976 GTTACTTTACCCTATGGGGGTTTTTC
1 GTCATTTTACCCTATGGGGGTATTTC
44755002 AGTAATTTAT
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
25 11 0.16
26 22 0.32
27 36 0.52
ACGTcount: A:0.16, C:0.19, G:0.24, T:0.41
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:44754986 original size:52 final size:53
Alignment explanation
Indices: 44754902--44755010 Score: 159
Period size: 52 Copynumber: 2.1 Consensus size: 53
44754892 TAACAGTCAT
* *
44754902 TTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTC-GATAA
1 TTTACCCTATGGGGGCATTTCGGTCACTTTACCCTATGGGGGTATTTCAG-TAA
* *
44754955 TTTACCCTAT-GGGGCATTTCGGTTACTTTACCCTATGGGGGTTTTTCAGTAA
1 TTTACCCTATGGGGGCATTTCGGTCACTTTACCCTATGGGGGTATTTCAGTAA
44755007 TTTA
1 TTTA
44755011 TTGACCTCTC
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
52 40 0.78
53 11 0.22
ACGTcount: A:0.18, C:0.17, G:0.23, T:0.41
Consensus pattern (53 bp):
TTTACCCTATGGGGGCATTTCGGTCACTTTACCCTATGGGGGTATTTCAGTAA
Found at i:44755557 original size:56 final size:56
Alignment explanation
Indices: 44755451--44755562 Score: 174
Period size: 56 Copynumber: 2.0 Consensus size: 56
44755441 CAGATTCCTT
*
44755451 TCGATCCGAACACTCTTATTCTGCAAATCAATGATCTATCACACTCTTGGTTCCCA
1 TCGATCCGAACACTCTTATTCCGCAAATCAATGATCTATCACACTCTTGGTTCCCA
*
44755507 TCGATCCGAACACCTCTTATTCCGCAAATCAATGATC-ATCGCAC-CTTTGGTTCCCA
1 TCGATCCGAACA-CTCTTATTCCGCAAATCAATGATCTATCACACTC-TTGGTTCCCA
44755563 AGCAATGTGC
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
55 1 0.02
56 28 0.54
57 23 0.44
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.30
Consensus pattern (56 bp):
TCGATCCGAACACTCTTATTCCGCAAATCAATGATCTATCACACTCTTGGTTCCCA
Found at i:44760318 original size:34 final size:32
Alignment explanation
Indices: 44760275--44760344 Score: 86
Period size: 32 Copynumber: 2.1 Consensus size: 32
44760265 AATAAATCTC
*
44760275 TAGATGCATATATATAGTATATATAACAGAACCA
1 TAGAGGCATATATAT-GT-TATATAACAGAACCA
* * *
44760309 TAGAGGCATATATCTGTTATATAATAGGACCA
1 TAGAGGCATATATATGTTATATAACAGAACCA
44760341 TAGA
1 TAGA
44760345 TGTATGTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 17 0.53
33 2 0.06
34 13 0.41
ACGTcount: A:0.43, C:0.11, G:0.16, T:0.30
Consensus pattern (32 bp):
TAGAGGCATATATATGTTATATAACAGAACCA
Found at i:44760542 original size:3 final size:3
Alignment explanation
Indices: 44760534--44760565 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
44760524 ACACACACAC
44760534 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA AC
1 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA AC
44760566 CGAATTTATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.34, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:44762130 original size:30 final size:29
Alignment explanation
Indices: 44762065--44762131 Score: 71
Period size: 30 Copynumber: 2.3 Consensus size: 29
44762055 AGTTTAATTT
* *
44762065 CCAAACTTTGGGGCAAAAACATAATTATG
1 CCAAAGTTTGGGGCAAAAACATAATTATC
** * *
44762094 TAAAAGTTTAGGGGCAAAATCATAATTTTC
1 CCAAAGTTT-GGGGCAAAAACATAATTATC
44762124 CCAAAGTT
1 CCAAAGTT
44762132 GGAGTCGAGG
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
29 6 0.21
30 23 0.79
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.28
Consensus pattern (29 bp):
CCAAAGTTTGGGGCAAAAACATAATTATC
Found at i:44762551 original size:50 final size:50
Alignment explanation
Indices: 44762471--44762710 Score: 327
Period size: 50 Copynumber: 4.8 Consensus size: 50
44762461 TGGGTAAAGG
* *
44762471 GGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGGTGAGA
1 GGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGA
* *
44762521 GGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGA
1 GGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGA
* * *
44762571 GGTCCCATGTAAGAACATGTTTGGGACATGGCGTTGGCACCGAGATGAGA
1 GGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGA
** * * *
44762621 GGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCATCGATATGAGAA
1 GGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAG-A
** * *
44762672 CATCCCATGTAATACCATGTCTGGGACATGGCTTTGGCA
1 GGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
44762711 TGCTATTATT
Statistics
Matches: 167, Mismatches: 22, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
50 134 0.80
51 33 0.20
ACGTcount: A:0.25, C:0.21, G:0.32, T:0.23
Consensus pattern (50 bp):
GGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGA
Found at i:44778925 original size:40 final size:40
Alignment explanation
Indices: 44778894--44779183 Score: 440
Period size: 40 Copynumber: 7.3 Consensus size: 40
44778884 GGACTAAGAT
* * * *
44778894 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGTTATTAAA-TCCGGGTTAAGTC
* * * *
44778934 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
44778974 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
44779014 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
44779054 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
44779094 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * *
44779134 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
44779173 CCGAAGGCATT
1 CCGAAGGCATT
44779184 TGAACGAGGA
Statistics
Matches: 237, Mismatches: 12, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
39 34 0.14
40 200 0.84
41 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:44778978 original size:80 final size:80
Alignment explanation
Indices: 44778841--44779183 Score: 442
Period size: 80 Copynumber: 4.3 Consensus size: 80
44778831 TTGAATGCTG
* * * * * * **
44778841 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
* * *
44778904 TTGTGCGAGATA-CAAA
64 TCGTGCGAGTTATTAAA
* * * * *
44778920 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
44778985 CGTGCGAGTTATTAAA
65 CGTGCGAGTTATTAAA
44779001 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
44779066 GTGCGAGTTATTAAA
66 GTGCGAGTTATTAAA
44779081 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT-
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
44779145 GTGTGAGTTACTAAA
66 GTGCGAGTTATTAAA
* * *
44779160 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
44779184 TGAACGAGGA
Statistics
Matches: 238, Mismatches: 22, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
79 35 0.15
80 193 0.81
81 10 0.04
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
GTGCGAGTTATTAAA
Found at i:44779057 original size:120 final size:118
Alignment explanation
Indices: 44778841--44779185 Score: 442
Period size: 120 Copynumber: 2.9 Consensus size: 118
44778831 TTGAATGCTG
* * * * * * **
44778841 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCA-
* * * *
44778904 TTGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
63 TTGTGCGAGTTATAAA-TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
44778961 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT-
* * *
44779026 GTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
65 GTGCGAGTTA-TAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
44779081 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTG
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTG
* * * *
44779146 TGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
66 TGCGAGTTA-TAAATCCGGGTTAAGTCCCGAAGGCATTTG
44779186 AACGAGGAGC
Statistics
Matches: 200, Mismatches: 21, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
119 38 0.19
120 153 0.76
121 9 0.05
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (118 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTG
TGCGAGTTATAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:44784605 original size:43 final size:43
Alignment explanation
Indices: 44784506--44784608 Score: 134
Period size: 43 Copynumber: 2.4 Consensus size: 43
44784496 TTATATGAAA
* *
44784506 AAAAACACCACTAAAAAACATGACCTTTAGCGACGCTTTCCCC
1 AAAAACACCACTAAAGAACATGACCTTTAGCGACGCTTTCACC
* * * * *
44784549 ACAAACGCCACTAAAGAACATGACTTTTAGCGGCGCTTTTACC
1 AAAAACACCACTAAAGAACATGACCTTTAGCGACGCTTTCACC
*
44784592 AAAAACACTACTAAAGA
1 AAAAACACCACTAAAGA
44784609 TAGTAAAAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.41, C:0.28, G:0.12, T:0.19
Consensus pattern (43 bp):
AAAAACACCACTAAAGAACATGACCTTTAGCGACGCTTTCACC
Found at i:44787284 original size:14 final size:14
Alignment explanation
Indices: 44787265--44787291 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
44787255 GAAACACTTT
44787265 AAAAAAAAAGAAAA
1 AAAAAAAAAGAAAA
44787279 AAAAAAAAAGAAA
1 AAAAAAAAAGAAA
44787292 TATATATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAGAAAA
Found at i:44787413 original size:12 final size:12
Alignment explanation
Indices: 44787396--44787423 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
44787386 ATGATTAAGG
44787396 ACATTAATAGTA
1 ACATTAATAGTA
44787408 ACATTAATAGTA
1 ACATTAATAGTA
44787420 ACAT
1 ACAT
44787424 CATAAATAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.11, G:0.07, T:0.32
Consensus pattern (12 bp):
ACATTAATAGTA
Found at i:44788180 original size:14 final size:14
Alignment explanation
Indices: 44788161--44788187 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
44788151 GCTGCTTTGT
44788161 GTTGGATTTTCATC
1 GTTGGATTTTCATC
44788175 GTTGGATTTTCAT
1 GTTGGATTTTCAT
44788188 ATTACGAACG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.11, G:0.22, T:0.52
Consensus pattern (14 bp):
GTTGGATTTTCATC
Found at i:44788326 original size:16 final size:17
Alignment explanation
Indices: 44788307--44788341 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
44788297 ATTATTTAAT
44788307 ATATAAATT-AAAAACA
1 ATATAAATTAAAAAACA
44788323 ATATAAATTAAAAAACA
1 ATATAAATTAAAAAACA
44788340 AT
1 AT
44788342 CAGTTATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.26
Consensus pattern (17 bp):
ATATAAATTAAAAAACA
Found at i:44788426 original size:22 final size:22
Alignment explanation
Indices: 44788390--44788435 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
44788380 AATAATAGTT
**
44788390 TAATTTTTTTCATTTAAATAAA
1 TAATTTTTTAAATTTAAATAAA
* *
44788412 TAATTTTTTAAATTTTAATTAA
1 TAATTTTTTAAATTTAAATAAA
44788434 TA
1 TA
44788436 TTTAAAAGAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (22 bp):
TAATTTTTTAAATTTAAATAAA
Found at i:44788473 original size:16 final size:16
Alignment explanation
Indices: 44788455--44788512 Score: 71
Period size: 16 Copynumber: 3.4 Consensus size: 16
44788445 ATTAGATAAA
44788455 ATTTAAAATCTTGAAAATT
1 ATTTAAAAT-TTG-AAA-T
44788474 ATTTAAAATTTGAAAT
1 ATTTAAAATTTGAAAT
*
44788490 CTTTAAAATTTGAAATT
1 ATTTAAAATTTGAAA-T
44788507 ATTTAA
1 ATTTAA
44788513 TATATAAATT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
16 15 0.42
17 9 0.25
18 3 0.08
19 9 0.25
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (16 bp):
ATTTAAAATTTGAAAT
Found at i:44788473 original size:26 final size:26
Alignment explanation
Indices: 44788444--44788499 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
44788434 TATTTAAAAG
44788444 AATTAGATAAAATTTAAAATCTTGAA
1 AATTAGATAAAATTTAAAATCTTGAA
** * *
44788470 AATTATTTAAAATTTGAAATCTTTAA
1 AATTAGATAAAATTTAAAATCTTGAA
44788496 AATT
1 AATT
44788500 TGAAATTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.50, C:0.04, G:0.05, T:0.41
Consensus pattern (26 bp):
AATTAGATAAAATTTAAAATCTTGAA
Found at i:44789730 original size:50 final size:49
Alignment explanation
Indices: 44789628--44789760 Score: 124
Period size: 50 Copynumber: 2.7 Consensus size: 49
44789618 CTAATTAATC
* * *
44789628 TAAACCTTAAACCCCTAACCCCTAACCCTTAAACCCTGAATCATAAAACA
1 TAAACCCTAAACCCCTAACCCCTAAACCTTAAACCC-GAACCATAAAACA
* * **
44789678 TAAACCCTAAGCCCCTAACCCCTAAACCTTAAACTCC-AACCCTTAACCCA
1 TAAACCCTAAACCCCTAACCCCTAAACCTTAAAC-CCGAA-CCATAAAACA
* * * **
44789728 TAATCCCTAAACCCATAATCTATAAACCTTAAA
1 TAAACCCTAAACCCCTAACCCCTAAACCTTAAA
44789761 ATAGTAACTC
Statistics
Matches: 68, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
49 2 0.03
50 64 0.94
51 2 0.03
ACGTcount: A:0.41, C:0.37, G:0.02, T:0.21
Consensus pattern (49 bp):
TAAACCCTAAACCCCTAACCCCTAAACCTTAAACCCGAACCATAAAACA
Found at i:44789740 original size:15 final size:15
Alignment explanation
Indices: 44789717--44789747 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
44789707 TAAACTCCAA
*
44789717 CCCTTAACCCATAAT
1 CCCTAAACCCATAAT
44789732 CCCTAAACCCATAAT
1 CCCTAAACCCATAAT
44789747 C
1 C
44789748 TATAAACCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.42, G:0.00, T:0.23
Consensus pattern (15 bp):
CCCTAAACCCATAAT
Found at i:44789753 original size:15 final size:15
Alignment explanation
Indices: 44789722--44789755 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
44789712 TCCAACCCTT
*
44789722 AACCCATAATCCCTA
1 AACCCATAATCCATA
*
44789737 AACCCATAATCTATA
1 AACCCATAATCCATA
44789752 AACC
1 AACC
44789756 TTAAAATAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.35, G:0.00, T:0.21
Consensus pattern (15 bp):
AACCCATAATCCATA
Found at i:44789760 original size:22 final size:23
Alignment explanation
Indices: 44789735--44789785 Score: 54
Period size: 22 Copynumber: 2.3 Consensus size: 23
44789725 CCATAATCCC
44789735 TAAACCCA-TAA-TCTATAAACCT
1 TAAACCCAGTAACTCT-TAAACCT
**
44789757 TAAA-ATAGTAACTCTTAAACCT
1 TAAACCCAGTAACTCTTAAACCT
44789779 TAAACCC
1 TAAACCC
44789786 TAAACCAATA
Statistics
Matches: 22, Mismatches: 4, Indels: 5
0.71 0.13 0.16
Matches are distributed among these distances:
21 1 0.05
22 18 0.82
23 3 0.14
ACGTcount: A:0.45, C:0.25, G:0.02, T:0.27
Consensus pattern (23 bp):
TAAACCCAGTAACTCTTAAACCT
Found at i:44789800 original size:13 final size:14
Alignment explanation
Indices: 44789772--44789817 Score: 67
Period size: 14 Copynumber: 3.4 Consensus size: 14
44789762 TAGTAACTCT
* *
44789772 TAAACCTTAAACCC
1 TAAACCATATACCC
44789786 TAAACCA-ATACCC
1 TAAACCATATACCC
44789799 TAAACCATATACCC
1 TAAACCATATACCC
44789813 TAAAC
1 TAAAC
44789818 TGTAATGATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 12 0.41
14 17 0.59
ACGTcount: A:0.46, C:0.35, G:0.00, T:0.20
Consensus pattern (14 bp):
TAAACCATATACCC
Found at i:44789879 original size:14 final size:14
Alignment explanation
Indices: 44789834--44789881 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 14
44789824 GATAATTAAT
44789834 TTAATATTTTAAAA
1 TTAATATTTTAAAA
* * *
44789848 TTAGTA-CTT-AAT
1 TTAATATTTTAAAA
44789860 TTAATATTTTAAAA
1 TTAATATTTTAAAA
44789874 TTAATATT
1 TTAATATT
44789882 ATATCTTTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
12 7 0.27
13 4 0.15
14 15 0.58
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (14 bp):
TTAATATTTTAAAA
Found at i:44790305 original size:154 final size:154
Alignment explanation
Indices: 44790010--44790328 Score: 362
Period size: 154 Copynumber: 2.1 Consensus size: 154
44790000 AATATTTTTT
* ** * *
44790010 GCGGCG-TTTTTCAAAAAGCACCACTAATGCCACTAAAGCTCAACATAAAACAACAGCGTTGTGT
1 GCGGCGTTTTTTGAAAAA-CACTGCTAATGCCACTAAAGCTCAACATAAAACAACAGCGTTATGC
*
44790074 TTAATTTTTTGCGGCGTTTTTAAAAAATCGTCGCTAATGATCAACCTATAGCAGCGATTTCAAAA
65 TTAATTTTTTGCAGCGTTTTTAAAAAATCGTCGCTAATGATCAACCTATAGCAGCGATTTCAAAA
* *
44790139 AAGCGCCGCTAAAGCTCGATCTATA
130 AAGCGCCACTAAAGCTCGACCTATA
* * * *
44790164 GCGGTGTTTTTTGAAAAACACTGCTAATGCCA-TCAAATCTCAACATAAAACGAC-GGGTTATGC
1 GCGGCGTTTTTTGAAAAACACTGCTAATGCCACT-AAAGCTCAACATAAAACAACAGCGTTATGC
* * * * *
44790227 TTAATTTTTTTGCAGCGTTTTTCAAAAAGTGGT-GCTAATGGTCGACCTATAGCGGC-ATTTTTC
65 TTAA-TTTTTTGCAGCGTTTTT-AAAAAATCGTCGCTAATGATCAACCTATAGCAGCGA--TTTC
* *
44790290 -AAAAGGCTCCACTAAAGCTCGACCTATA
126 AAAAAAGCGCCACTAAAGCTCGACCTATA
*
44790318 GTGGCGTTTTT
1 GCGGCGTTTTT
44790329 AAAAAGTGCC
Statistics
Matches: 138, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
153 12 0.09
154 104 0.75
155 22 0.16
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (154 bp):
GCGGCGTTTTTTGAAAAACACTGCTAATGCCACTAAAGCTCAACATAAAACAACAGCGTTATGCT
TAATTTTTTGCAGCGTTTTTAAAAAATCGTCGCTAATGATCAACCTATAGCAGCGATTTCAAAAA
AGCGCCACTAAAGCTCGACCTATA
Found at i:44790365 original size:39 final size:40
Alignment explanation
Indices: 44790241--44790407 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
44790231 TTTTTTTGCA
* *** * *
44790241 GCGTTTTTCAAAAAGTGGTGCTAATGGTCGACCTATAGCG
1 GCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGCG
* * * * * *
44790281 GCATTTTTCAAAAGGCTCCACTAAAGCTCGACCTATAGTG
1 GCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGCG
* *
44790321 GCGTTTTT-AAAAAGTGCCGCTAATGCGT-GATCTATAGCG
1 GCGTTTTTCAAAAAGCGCCACTAATGC-TCGATCTATAGCG
* *
44790360 ACGTTTTTCAAAAAGCGTCACTAATGCTCGATCTATAGCG
1 GCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGCG
44790400 GCGTTTTT
1 GCGTTTTT
44790408 TATCCAAACA
Statistics
Matches: 101, Mismatches: 23, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
39 30 0.30
40 71 0.70
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.31
Consensus pattern (40 bp):
GCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGCG
Found at i:44790382 original size:79 final size:80
Alignment explanation
Indices: 44790241--44790407 Score: 214
Period size: 79 Copynumber: 2.1 Consensus size: 80
44790231 TTTTTTTGCA
** * *
44790241 GCGTTTTTCAAAAAGTGGTGCTAATGGTCGACCTATAGCGGCATTTTTCAAAAGGCTCCACTAAA
1 GCGTTTTTCAAAAAGTGCCGCTAATGGTCGACCTATAGCGACATTTTTCAAAAAGCTCCACTAAA
*
44790306 GCTCGACCTATAGTG
66 GCTCGACCTATAGCG
* *
44790321 GCGTTTTT-AAAAAGTGCCGCTAATGCGT-GATCTATAGCGACGTTTTTCAAAAAGCGT-CACTA
1 GCGTTTTTCAAAAAGTGCCGCTAATG-GTCGACCTATAGCGACATTTTTCAAAAAGC-TCCACTA
* *
44790383 ATGCTCGATCTATAGCG
64 AAGCTCGACCTATAGCG
44790400 GCGTTTTT
1 GCGTTTTT
44790408 TATCCAAACA
Statistics
Matches: 76, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
79 65 0.86
80 11 0.14
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.31
Consensus pattern (80 bp):
GCGTTTTTCAAAAAGTGCCGCTAATGGTCGACCTATAGCGACATTTTTCAAAAAGCTCCACTAAA
GCTCGACCTATAGCG
Found at i:44796059 original size:130 final size:130
Alignment explanation
Indices: 44795826--44796081 Score: 415
Period size: 130 Copynumber: 2.0 Consensus size: 130
44795816 ATTGACGCGG
44795826 CTGCCTACTTGGTGACTAATAAGGCTATACCTCTTTTGTATTCTTTATCTAATAAAATTTTCTTT
1 CTGCCTACTTGGTGACTAATAAGGCTATACCTCTTTTGTATTCTTTATCTAATAAAATTTTCTTT
* * * * *
44795891 CTCTATTAGTTGTACTTTTAATGTATGCACTTGCTTTTCCTTTCTCTACATTTATCTACTCTCGA
66 CTCTATCAATTGTACTTTCAATGTATGCACTTACTTTTCCTTTCTCTAAATTTATCTACTCTCGA
* *
44795956 CTGCCTACTTGGCT-ACTAATAAGGCTATACCTCTTTTGTATTCTTTATCTACTAAATTTTTCTT
1 CTGCCTACTTGG-TGACTAATAAGGCTATACCTCTTTTGTATTCTTTATCTAATAAAATTTTCTT
* *
44796020 TCTCTATCAATTGTACTTTCAATTTATGTACTTACTTTTCCTTTCTCTAAATTTATCTACTC
65 TCTCTATCAATTGTACTTTCAATGTATGCACTTACTTTTCCTTTCTCTAAATTTATCTACTC
44796082 GCATTTTCCT
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
130 115 0.99
131 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.08, T:0.48
Consensus pattern (130 bp):
CTGCCTACTTGGTGACTAATAAGGCTATACCTCTTTTGTATTCTTTATCTAATAAAATTTTCTTT
CTCTATCAATTGTACTTTCAATGTATGCACTTACTTTTCCTTTCTCTAAATTTATCTACTCTCGA
Done.