Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 25 of 144
Found at i:7585283 original size:53 final size:53
Alignment explanation
Indices: 7585204--7585310 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
7585194 GGTGGTCTAC
7585204 AAATAAATAAATTTTGTTCATACAGTATATCTAGAATAATGTTATTTGTTTTT
1 AAATAAATAAATTTTGTTCATACAGTATATCTAGAATAATGTTATTTGTTTTT
7585257 AAATAAATAAATTTTGTTCATACAGTATATCTAGAATAATGTTATTTGTTTTT
1 AAATAAATAAATTTTGTTCATACAGTATATCTAGAATAATGTTATTTGTTTTT
7585310 A
1 A
7585311 TAATTTGTTG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.47
Consensus pattern (53 bp):
AAATAAATAAATTTTGTTCATACAGTATATCTAGAATAATGTTATTTGTTTTT
Found at i:7585522 original size:10 final size:10
Alignment explanation
Indices: 7585507--7585532 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
7585497 TATAGCTTCA
7585507 TTTTATAATG
1 TTTTATAATG
7585517 TTTTATAATG
1 TTTTATAATG
7585527 TTTTAT
1 TTTTAT
7585533 TTTATTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (10 bp):
TTTTATAATG
Found at i:7586322 original size:55 final size:55
Alignment explanation
Indices: 7586255--7586385 Score: 192
Period size: 55 Copynumber: 2.4 Consensus size: 55
7586245 AATTCTCAAA
* * * *
7586255 AATATTACTTCTTTTGGATCGATTATTTTTATGTTTAAATCGATTGTCTTGTTGG
1 AATATTAGTTCTTTTGAATCGATTATTTATATGTTTAAATCGATTGTCATGTTGG
**
7586310 AATATTAGTTCTTTTGAATAAATTATTTATATGTTTAAATCGATTGTCATGTTGG
1 AATATTAGTTCTTTTGAATCGATTATTTATATGTTTAAATCGATTGTCATGTTGG
7586365 AATATT-GTTTCTTTTGAATCG
1 AATATTAG-TTCTTTTGAATCG
7586386 GTTGTTATGG
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 1 0.01
55 66 0.99
ACGTcount: A:0.26, C:0.08, G:0.15, T:0.51
Consensus pattern (55 bp):
AATATTAGTTCTTTTGAATCGATTATTTATATGTTTAAATCGATTGTCATGTTGG
Found at i:7586400 original size:34 final size:34
Alignment explanation
Indices: 7586347--7586411 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 34
7586337 TATATGTTTA
* * *
7586347 AATCGATTGTCATGTTGGAATATTGTTTCTTTTG
1 AATCGATTGTCATGGTGGAATACTGCTTCTTTTG
* *
7586381 AATCGGTTGTTATGGTGGAATACTGCTTCTT
1 AATCGATTGTCATGGTGGAATACTGCTTCTT
7586412 CTTCTTTATA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 26 1.00
ACGTcount: A:0.20, C:0.11, G:0.23, T:0.46
Consensus pattern (34 bp):
AATCGATTGTCATGGTGGAATACTGCTTCTTTTG
Found at i:7586515 original size:34 final size:31
Alignment explanation
Indices: 7586441--7586515 Score: 89
Period size: 31 Copynumber: 2.3 Consensus size: 31
7586431 TATATGTTTA
*
7586441 AATCGATTGTTATGTTGGAATACTATTTTTG
1 AATCGATTGTCATGTTGGAATACTATTTTTG
*
7586472 AATCTATTGTCATGTTGGAATA-TGATTTCTTTTG
1 AATCGATTGTCATGTTGGAATACT-A--T-TTTTG
7586506 AATCGATTGT
1 AATCGATTGT
7586516 TTATGTTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
30 1 0.03
31 21 0.57
33 1 0.03
34 14 0.38
ACGTcount: A:0.25, C:0.08, G:0.19, T:0.48
Consensus pattern (31 bp):
AATCGATTGTCATGTTGGAATACTATTTTTG
Found at i:7586530 original size:19 final size:19
Alignment explanation
Indices: 7586506--7586588 Score: 66
Period size: 19 Copynumber: 4.6 Consensus size: 19
7586496 ATTTCTTTTG
7586506 AATCGATTGTTTATGTTTA
1 AATCGATTGTTTATGTTTA
* **
7586525 AATCGATTG-TTATATTGG
1 AATCGATTGTTTATGTTTA
* * *
7586543 AAT--ATTGCTTCT-TTTG
1 AATCGATTGTTTATGTTTA
* *
7586559 AACCGATTGTTTGTGTTTA
1 AATCGATTGTTTATGTTTA
7586578 AATCGATTGTT
1 AATCGATTGTT
7586589 ACGTAGCATA
Statistics
Matches: 50, Mismatches: 10, Indels: 8
0.74 0.15 0.12
Matches are distributed among these distances:
16 9 0.18
17 3 0.06
18 16 0.32
19 22 0.44
ACGTcount: A:0.24, C:0.08, G:0.18, T:0.49
Consensus pattern (19 bp):
AATCGATTGTTTATGTTTA
Found at i:7586557 original size:53 final size:53
Alignment explanation
Indices: 7586472--7586589 Score: 166
Period size: 53 Copynumber: 2.2 Consensus size: 53
7586462 ACTATTTTTG
* * * * *
7586472 AATCTATTGTCATGTTGGAATATGATTTCTTTTGAATCGATTGTTTATGTTTA
1 AATCGATTGTTATATTGGAATATGACTTCTTTTGAACCGATTGTTTATGTTTA
*
7586525 AATCGATTGTTATATTGGAATATTG-CTTCTTTTGAACCGATTGTTTGTGTTTA
1 AATCGATTGTTATATTGGAATA-TGACTTCTTTTGAACCGATTGTTTATGTTTA
7586578 AATCGATTGTTA
1 AATCGATTGTTA
7586590 CGTAGCATAT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
53 56 0.97
54 2 0.03
ACGTcount: A:0.25, C:0.08, G:0.18, T:0.49
Consensus pattern (53 bp):
AATCGATTGTTATATTGGAATATGACTTCTTTTGAACCGATTGTTTATGTTTA
Found at i:7594686 original size:16 final size:17
Alignment explanation
Indices: 7594651--7594683 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7594641 AGGAAAATAA
*
7594651 AAAATTTTGAGATTTTT
1 AAAATTTCGAGATTTTT
7594668 AAAATTTCGAGATTTT
1 AAAATTTCGAGATTTT
7594684 AAATTTAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.03, G:0.12, T:0.48
Consensus pattern (17 bp):
AAAATTTCGAGATTTTT
Found at i:7595035 original size:20 final size:21
Alignment explanation
Indices: 7594991--7595029 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
7594981 CGAATCCCAA
7594991 GTTTAAGGTTTAGAATTCAGT
1 GTTTAAGGTTTAGAATTCAGT
7595012 GTTT-AGGTTT-GAGATTCA
1 GTTTAAGGTTTAGA-ATTCA
7595030 TGGTTTGGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 2 0.12
20 11 0.65
21 4 0.24
ACGTcount: A:0.26, C:0.05, G:0.26, T:0.44
Consensus pattern (21 bp):
GTTTAAGGTTTAGAATTCAGT
Found at i:7596280 original size:23 final size:24
Alignment explanation
Indices: 7596253--7596312 Score: 70
Period size: 23 Copynumber: 2.6 Consensus size: 24
7596243 TTTAATGTTC
**
7596253 ACGAATATGTTCATTTAAC-TTAA
1 ACGAATATGTTCATCAAACATTAA
* *
7596276 TCGAACATGTTCA-CAAACATTAA
1 ACGAATATGTTCATCAAACATTAA
7596299 ACGAATATGTTCAT
1 ACGAATATGTTCAT
7596313 GAACATATAA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
22 3 0.10
23 26 0.90
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (24 bp):
ACGAATATGTTCATCAAACATTAA
Found at i:7596334 original size:24 final size:23
Alignment explanation
Indices: 7596272--7596341 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
7596262 TTCATTTAAC
*
7596272 TTAATCGAACATGTTCACAAACA
1 TTAATCGAACATGTTCACGAACA
* * *
7596295 TTAAACGAATATGTTCATGAACA
1 TTAATCGAACATGTTCACGAACA
*
7596318 TATAATTGAACATGTTCACGAACA
1 T-TAATCGAACATGTTCACGAACA
7596342 ATGTTAATAA
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
23 20 0.53
24 18 0.47
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.29
Consensus pattern (23 bp):
TTAATCGAACATGTTCACGAACA
Found at i:7607492 original size:23 final size:24
Alignment explanation
Indices: 7607440--7607494 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 24
7607430 TCATCCACAA
*
7607440 AAAAAGAAAATTAAATAATAATAT
1 AAAAAGAGAATTAAATAATAATAT
**
7607464 TCAAAGAGAA-TAAATAAATAA-AT
1 AAAAAGAGAATTAAAT-AATAATAT
7607487 AAAAAGAG
1 AAAAAGAG
7607495 CAACCTTGAG
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
23 13 0.52
24 12 0.48
ACGTcount: A:0.69, C:0.02, G:0.09, T:0.20
Consensus pattern (24 bp):
AAAAAGAGAATTAAATAATAATAT
Found at i:7613376 original size:31 final size:29
Alignment explanation
Indices: 7613341--7613410 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 29
7613331 ATACCAAAAT
* *
7613341 TATACATTAACTATGGTTTAATGTGCAATTG
1 TATACATGAACTATGATTT--TGTGCAATTG
* *
7613372 TATACATGAACTTTGATTTTGTGCAATTT
1 TATACATGAACTATGATTTTGTGCAATTG
7613401 TATACATGAA
1 TATACATGAA
7613411 ATTTTGATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 19 0.54
31 16 0.46
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (29 bp):
TATACATGAACTATGATTTTGTGCAATTG
Found at i:7613394 original size:29 final size:30
Alignment explanation
Indices: 7613362--7613420 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
7613352 TATGGTTTAA
7613362 TGTGCAATTGTATACATG-AACTTTGATTT
1 TGTGCAATTGTATACATGAAACTTTGATTT
* *
7613391 TGTGCAATTTTATACATGAAATTTTGATTT
1 TGTGCAATTGTATACATGAAACTTTGATTT
7613421 GATCTAATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.29, C:0.08, G:0.15, T:0.47
Consensus pattern (30 bp):
TGTGCAATTGTATACATGAAACTTTGATTT
Found at i:7614757 original size:21 final size:23
Alignment explanation
Indices: 7614718--7614759 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
7614708 TATGTTTTCT
7614718 GACATTCAATAATAAATTTTTGA
1 GACATTCAATAATAAATTTTTGA
*
7614741 GACA-TCAA-AATATATTTTT
1 GACATTCAATAATAAATTTTT
7614760 ATTAAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 10 0.56
22 4 0.22
23 4 0.22
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (23 bp):
GACATTCAATAATAAATTTTTGA
Found at i:7615618 original size:20 final size:20
Alignment explanation
Indices: 7615575--7615619 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
7615565 TATAAAAAGT
* *
7615575 TTTAATATTTTTATAATTTT
1 TTTATTATTTTTATAATTTC
7615595 TTTATTATTTTTAT-ATTTGC
1 TTTATTATTTTTATAATTT-C
7615615 TTTAT
1 TTTAT
7615620 AAATACTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (20 bp):
TTTATTATTTTTATAATTTC
Found at i:7622818 original size:133 final size:132
Alignment explanation
Indices: 7622601--7622848 Score: 424
Period size: 133 Copynumber: 1.9 Consensus size: 132
7622591 TTGGTAGTTT
7622601 CTTTCGTTATTATAAAAAAATATGTTATTGGTCATCATACTTAGATAAGATTTAAAATTTAGTCT
1 CTTTCGTTATTATAAAAAAATATGTTATTGGTCATCATACTTAGATAAGATTTAAAATTTAGTCT
* **
7622666 CTATACTAAAATGTTTAAAACATAAGCCCTCTTGCTTTTCTAATTTAAAACATGCTATTAAATGT
66 ATATACTAAAATGGCTAAAACATAAGCCCTCTTGCTTTTCTAATTTAAAACATGCTATTAAATGT
7622731 TC
131 TC
* *
7622733 CTTTCGTTATTATAAAAAACATATGTTATTGGTCCTTATACTTAGATAAGATTTAAAATTTAGTC
1 CTTTCGTTATTATAAAAAA-ATATGTTATTGGTCATCATACTTAGATAAGATTTAAAATTTAGTC
* *
7622798 TATATACTTAAATGGCTAAAACATAAGCCCTCTTGCTTTTTTAATTTAAAA
65 TATATACTAAAATGGCTAAAACATAAGCCCTCTTGCTTTTCTAATTTAAAA
7622849 ATCACAGTCT
Statistics
Matches: 108, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
132 19 0.18
133 89 0.82
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.41
Consensus pattern (132 bp):
CTTTCGTTATTATAAAAAAATATGTTATTGGTCATCATACTTAGATAAGATTTAAAATTTAGTCT
ATATACTAAAATGGCTAAAACATAAGCCCTCTTGCTTTTCTAATTTAAAACATGCTATTAAATGT
TC
Found at i:7623467 original size:404 final size:403
Alignment explanation
Indices: 7622710--7629245 Score: 6323
Period size: 405 Copynumber: 16.1 Consensus size: 403
7622700 CTTTTCTAAT
** * *
7622710 TTAAAACATGCTATTAAATGTTCCTTTCGTTATTATAAAAAACATATGTTATTGGTCCTTATACT
1 TTAAAACATGCTATTAGTTGTTTCTTTCGTTATTATAAAAAA-ATATGTTATTGGTCTTTATACT
* *
7622775 TAGATAAGATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTTGCTTTTTT
65 TAGATAAGATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCT
* * **
7622840 AATTTAAAAATCACAGTCTCGGCAGTAAAATTATTAGTATTTTTCATCAAAATTTACAAACTTGA
130 AATTTAAAAATCACAGCCCCATCAGTAAAATTATTAGTA-TTTTCATCAAAATTTACAAACTTGA
* * *
7622905 CATGTTAATTAGATTACTCTCACATGAGGTTGACTATAATTGGCATCTTACATGAAGAAAGATTA
194 CATGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGACATCTTACATGAAGAAAGACTA
* * * * *
7622970 TGATATGATATTAACCTTTTGGTAGTCTAGAGTAACGGCTTTTAGCTTTTAATAAATGGCTAGAA
259 TGATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCTAAAA
* * * *
7623035 ATGGTAATTATAGATCATTTAACAAATGACACTCAACCCAATCAGCGTTGACTACAATTATTCAC
324 ATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCAGCGTTGACTACCATTATT-AA
7623100 T-TTATTTTTATTTGG
388 TGTTATTTTTATTTGG
* ** *
7623115 TTAAAACATGATATTAGTTGTTTCTTTCGTTATTATAAAAAATATATGGCATTCGTCTTTATACT
1 TTAAAACATGCTATTAGTTGTTTCTTTCGTTATTATAAAAAA-ATATGTTATTGGTCTTTATACT
* * *
7623180 TAGCTAATATTTAAAATTTAGTCTATAAACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCT
65 TAGATAAGATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCT
** * * * *
7623245 CGTTTAAAAATCACAGCCCCAACAATAAAATTATTTGTATTTTCATCAATATTTACAAACTTGAC
130 AATTTAAAAATCACAGCCCCATCAGTAAAATTATTAGTATTTTCATCAAAATTTACAAACTTGAC
* * * *
7623310 ATGTTAATTAGCCCACTCTCACTTGTGGTTGACTATAATTGACAT-TATACATGAAGAAAGACTA
195 ATGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGACATCT-TACATGAAGAAAGACTA
* * * * *
7623374 TGATATAATATTAACCTTATGGTAGTCAAGAGTAACGGCTAGTAGCTTTTAACAGATGGCTAAAA
259 TGATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCTAAAA
* * *
7623439 ATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCCGTGTTTG-CTACCATTATTGA
324 ATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCAGCG-TTGACTACCATTATTAA
* *
7623503 TATTATTTTTATTTGT
388 TGTTATTTTTATTTGG
* *
7623519 TTAAAACATGCTATTAGTTCTTTCTCTT-GTTATTATAAAAATATTATGTTATTGGTCTTTATAC
1 TTAAAACATGCTATTAGTTGTTTCT-TTCGTTATTATAAAAA-AATATGTTATTGGTCTTTATAC
* *
7623583 TTAGATAATATTTAAAA-TTATGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCACTTTT
64 TTAGATAAGATTTAAAATTTA-GTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTT
* * * *
7623647 GTAGTTTAAAAATCACAGCCCCGTCAGTAAAATTATTAGTATTTTCATCAAGATTTACAAACTTG
128 CTAATTTAAAAATCACAGCCCCATCAGTAAAATTATTAGTATTTTCATCAAAATTTACAAACTTG
* * * * *
7623712 ACTTGTTAATTAGAATACTCTCACATGAGTTTGACTATAATTGACATCTTACATGAAAAAAGATT
193 ACATGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGACATCTTACATGAAGAAAGACT
* * * * * * * *
7623777 ATGATAT-ACTTTTATCCTTATGATAGTCTAGAGCAACGTCTATAAGCTTTTAATAAATGGTTAA
258 ATGATATGA-TATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCTAA
* * * *
7623841 AAATGATAATTACAGATCATTTATCAAATGACACTCAACTCAATCCGTGTTTGA-TGA-CATTAT
322 AAATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCAGCG-TTGACT-ACCATTAT
* *
7623904 TAATGTTCTTTTTACTTGG
385 TAATGTTATTTTTATTTGG
* *
7623923 TTAAAACATGCTATTAGTTGTTTCTTTCGTTATTATAAAAAAAAATATGTCATTGGTCATTATAC
1 TTAAAACATGCTATTAGTTGTTTCTTTCGTTATTAT--AAAAAAATATGTTATTGGTCTTTATAC
* *** * * ** *
7623988 TTAGATAAGATTTAAAAGTTAGTCTCCGTACTTAAATGGTTAAAACATAAGGCCTCTTACTTTAC
64 TTAGATAAGATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTC
* * *** * * * *
7624053 TAATTTAAAAGTCACAACCTTTTTAGTAAACTTATTAGTATTTTAATCAAAATTTAAAAACTTGA
129 TAATTTAAAAATCACAGCCCCATCAGTAAAATTATTAGTATTTTCATCAAAATTTACAAACTTGA
* * * * *
7624118 CATGTTAATTAGACTACTCTCACACGAGGTTGACTATAATTGACGTCTTACATGAACAAATACTG
194 CATGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGACATCTTACATGAAGAAAGACTA
* *
7624183 TGATATGATATTAACATTATGGTAGTCTAGAGTAACGGCTATTAGCTTTTAATAGATGGCTAAAA
259 TGATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCTAAAA
* * * * * * *
7624248 ATGGTTATTACAGATCATTTATCAAATGACATTTAACCTAATCA-AGTTGGCTACCATTATTGAT
324 ATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCAGCGTTGACTACCATTATTAAT
* *
7624312 ATTATTTTT-TTGGGG
389 GTTATTTTTATT-TGG
* * * * * **
7624327 TTAAAACATGCTATTAATTGTTTCTTTTGTTATTAGAAAAAAAAATGTTATTAGTCCATATACTT
1 TTAAAACATGCTATTAGTTGTTTCTTTCGTTATTATAAAAAAATATGTTATTGGTCTTTATACTT
* * ** * *
7624392 AGATAAGATTTAAAATCTAGTCTATATACATAAATGGCTTGAACATAAGCCCCCTCTCTTTTCTA
66 AGATAAGATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTA
* * * * ** *
7624457 GTTTAAAAACCACAGTCCCATGAGTAAAATTATT-GATATTTTCATCATGATTTACAAGCTTGAC
131 ATTTAAAAATCACAGCCCCATCAGTAAAATTATTAG-TATTTTCATCAAAATTTACAAACTTGAC
* * * * *
7624521 ATGTTAATTAGACAACTCTCACACGAAGTTTACTATAATAGACATCTTACATGAAGAAAGACTAT
195 ATGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGACATCTTACATGAAGAAAGACTAT
* * * *
7624586 AATATCATATTAACCTTATGGTGGTCTAGAGTAACGGCTATTAGCTTTTAATAGATGGCTAAAAA
260 GATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCTAAAAA
* * * * * *
7624651 TGATAATTGCAGATCATTCAACAAATGACACTCAACCCAAT-ATGCTTTGGA-TACCATTATTGA
325 TGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCA-GCGTT-GACTACCATTATTAA
* * *
7624714 TATTATTTTTGTTTTTAG
388 TGTTA-TTTT-TATTTGG
* * * * *
7624732 TTAAAACATG-TTTTAGTTTGTTTCTTTCGTTATTAT-AAAAAACATCTAATTGGTCCTTATACT
1 TTAAAACATGCTATTAG-TTGTTTCTTTCGTTATTATAAAAAAATATGTTATTGGTCTTTATACT
* *
7624795 TAGATACGATTTAAAATTTAGTCTATATACTTAAATGGTTAAAACATAAGCCCTCTCGCTTTTCT
65 TAGATAAGATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCT
* ** * *
7624860 AATTTAAAAGTCACAATCTCATCAGTAAAATTATTAGTATTTTTTATCAAAATTTACAAACTTGA
130 AATTTAAAAATCACAGCCCCATCAGTAAAATTATTAGTA-TTTTCATCAAAATTTACAAACTTGA
* *
7624925 CATGTTAATTAGACTACTCTCACACGAGGTTGACTATAATTGGCATCTTACATGAAGAAAGACTA
194 CATGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGACATCTTACATGAAGAAAGACTA
* * * *
7624990 TGATATGATATTAACCTTTTGGTAGTCTAGAGTAACGACTTTTAGCTTTTAATAAATGGCTAGAA
259 TGATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCTAAAA
* * * *
7625055 ATGGTAATTACAAATCATTTAACAAATGACACTCAACCCAATCAGCGTTGACTACTATTATTCAC
324 ATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCAGCGTTGACTACCATTATT-AA
7625120 T-TTATTTTTATTTGG
388 TGTTATTTTTATTTGG
* * ** *
7625135 TTAAACCATGATATTAGTTGTTTCTTTCGTTATTATAAAAAAATATATGGCATTCGTCTTTATAC
1 TTAAAACATGCTATTAGTTGTTTCTTTCGTTATTAT-AAAAAA-ATATGTTATTGGTCTTTATAC
* * * ** * * * *
7625200 TTAGATAATATATAAAATTTAGTCTATAAACTTAAACAGCTTAAGCATAAGCCCTTTCACTTTTC
64 TTAGATAAGATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTC
* * ** * * * *
7625265 TCACTTAAAAATCACAGCCATATTAGTAAAATTATTGGTATTTTCATCAATATTTACTAACTTGA
129 TAATTTAAAAATCACAGCCCCATCAGTAAAATTATTAGTATTTTCATCAAAATTTACAAACTTGA
* *
7625330 CATGTTATTTAGCCTACTCTCACATGAGGTTGACTATAATTGACATCTTACAT-AGAGAAAGACT
194 CATGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGACATCTTACATGA-AGAAAGACT
* * * * *
7625394 ATGATATAATATTAACCTTATGGTAGTCAAGAGTAATGGCTAGTAGCTTTTAATAGATGGCTAAA
258 ATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCTAAA
* * *
7625459 AATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCCGCGTTGGCTACCATTATTGA
323 AATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCAGCGTTGACTACCATTATTAA
* *
7625524 TTTTCTTTTTATTTGG
388 TGTTATTTTTATTTGG
* * *
7625540 TTAAAACATGTTATTAGTTGTTTCTTTGGTTATTATAAAAAAAATTATGTTATTGGTCGTTATAC
1 TTAAAACATGCTATTAGTTGTTTCTTTCGTTATTAT-AAAAAAA-TATGTTATTGGTCTTTATAC
* * * * * *
7625605 TTAGATACGATTTAAAATTTATTCTATATACTTAAACGGCTAAAACATAATCTCTCTCGCTTTTG
64 TTAGATAAGATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTC
* * * * * * *
7625670 TAGTTTAAAAATCATAGCCCCATGAGTAAAATTATTGGTATTTTCATCGAGACTTACAAACTTGA
129 TAATTTAAAAATCACAGCCCCATCAGTAAAATTATTAGTATTTTCATCAAAATTTACAAACTTGA
*
7625735 CATGTTAATTAGACTACTCTCACGTGA-GTATGACTATAATTGACATCTTACATGAAGAAAGACT
194 CATGTTAATTAGACTACTCTCACATGAGGT-TGACTATAATTGACATCTTACATGAAGAAAGACT
* * * *
7625799 CTGATATGATATTAACCTTATGATTGTCAAGAGTAACGACTATTTA-CTTTTAATAGATGGCTAA
258 ATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTA-TTAGCTTTTAATAGATGGCTAA
* * * * * * *
7625863 AAATGGTATTTACAAATCATTTAACAAATGACACTCAACCC-ATTACGCGTTGGCTACCGTTAGT
322 AAATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCA-GCGTTGACTACCATTATT
* *
7625927 GATGTTTTTTTTATTTGG
386 AATGTTATTTTTATTTGG
*
7625945 TTAAAACATGCTATTAGTTGTTTCTTTGGTTATTATAAAAATATATATGTTATTGGTCTTTATAC
1 TTAAAACATGCTATTAGTTGTTTCTTTCGTTATTATAAAAA-A-ATATGTTATTGGTCTTTATAC
* * * *
7626010 TTAGATCATATTTAAAATCTAGTCTATAAACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTC
64 TTAGATAAGATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTC
* * * * * *
7626075 TCATTTAAAAATCACA-TCCCATGAGTAAAACTATTGGTATTTTCATCAAAATTTTCAAACTTGA
129 TAATTTAAAAATCACAGCCCCATCAGTAAAATTATTAGTATTTTCATCAAAATTTACAAACTTGA
* * *
7626139 CATGTTAATTAGCCTACTCTCACATGAGATAGACTATAATTGACATCTTACATGAAGAAAGACTA
194 CATGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGACATCTTACATGAAGAAAGACTA
* * * * *
7626204 TGATATAATATTAACATTATTGTAGTCTAGAGTAACGGCTATTAGCTTTTAATAGATGGCTTAAA
259 TGATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCTAAAA
* ** *
7626269 ATGGTAATTACAGATCATTTCTCAAATGACACTCAACCCAATCCA-CGTTGGTTACCATTATTGA
324 ATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAAT-CAGCGTTGACTACCATTATTAA
7626333 TGTTATTTTTATTTGG
388 TGTTATTTTTATTTGG
* * * *
7626349 TTAAAACATACTATTATTTTTTTCTTTCGTTATTAT-AAAAAA-ATGTTATTGGT-TCATATACT
1 TTAAAACATGCTATTAGTTGTTTCTTTCGTTATTATAAAAAAATATGTTATTGGTCT-TTATACT
* *
7626411 TAGATAAGATTTAAATTTTAGTATATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCT
65 TAGATAAGATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCT
* * * * *
7626476 AGTTT---AA--A-A-----AT---T---A-T-TGA-TATTTTCATCAAGATATAAAAACTTGAC
130 AATTTAAAAATCACAGCCCCATCAGTAAAATTATTAGTATTTTCATCAAAATTTACAAACTTGAC
* * *
7626521 ATGTTTATTAGACTACTCTCACATGAGGTTGACTATAATTGACATCTTACATGAAGAAAAACCAT
195 ATGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGACATCTTACATGAAGAAAGACTAT
* ** * * * * *
7626586 CATATCCTGTTAACGTTATGGTAATCTAGAGTAACAACTATTAGCTTTTAGTAGATGGCTAAAAA
260 GATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCTAAAAA
* * * *
7626651 TGGTAATTACATATCATTTATCAAATGACACTCAACCAAAT-TGTGTTCGA-TACCATTATTAAT
325 TGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCAGCGTT-GACTACCATTATTAAT
*
7626714 GTTATTTTTACTTGG
389 GTTATTTTTATTTGG
** * * *
7626729 TTAAAACATATTATTAGTCGTTTCTTTTGTTATTATAAAAAAATGTGTTATTGGTGC-TTATACT
1 TTAAAACATGCTATTAGTTGTTTCTTTCGTTATTATAAAAAAATATGTTATTGGT-CTTTATACT
* * * * *
7626793 TAAATAAGATTTAAAATTTAATCTATATACTAAAATGGCTAAAACATATGCCCTCTCGCTTTTTT
65 TAGATAAGATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCT
** * * * *
7626858 GGTTTAAAAATCACATCCCCATCAGTAAAATTATTAGCATTTTCATTAAAATTTAAAAACTTGAC
130 AATTTAAAAATCACAGCCCCATCAGTAAAATTATTAGTATTTTCATCAAAATTTACAAACTTGAC
* * ** * * * *
7626923 ATGTT-ATTAGACTACTCACGCATGACTTTGACTATAATTGACATATTACATGATGAAAAACGAT
195 ATGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGACATCTTACATGAAGAAAGACTAT
* * * * *
7626987 GATGTGGTATTAACCTTATGGTAGTCTAAAGTAACGACTATTGGCTTTTAATAGATGGCAAAAAA
260 GATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCTAAAAA
* * * * *
7627052 TGGTAGTTATAGATCATTTATCAAATGACACTCAAACCAATCCGTGTTTGA-TACCATTATTAAT
325 TGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCAGCG-TTGACTACCATTATTAAT
7627116 GTTATTTTTATTTGG
389 GTTATTTTTATTTGG
* * *** * * * *
7627131 TTAAAACATGCAATTTGGAATTTCTTTCGTTATTCTAAACAAAT-TATTATTGGTCATTATACTT
1 TTAAAACATGCTATTAGTTGTTTCTTTCGTTATTATAAAAAAATATGTTATTGGTCTTTATACTT
* * * **** * ***
7627195 AGATAAGATTTAAAATTTAGTTTTTATACTTAAATGGTTAAAACTTACTTAGATAAATTTTAAAT
66 AGATAAGATTTAAAATTTAGTCTATATACTTAAATGGCTAAAAC--A--TA-A-GCCCTCT-CGC
* * * ** **
7627260 TTTAATCTATATACTTAAACGGCTAAAACATAAGCCCTC-TCACT--TTTCTAGTTTAAAAATCA
124 TTT--TCTA-AT--TT-AA-----AAATCA-CAGCCC-CATCAGTAAAAT-TA--TT-AGTAT--
* * * ** * * * * * * * * * * *
7627322 CTGCCTCATGA-GTA-AAATTATTGATATTTTCATCAAGATTTAC-AT-ACTTGACATGTT-AAT
170 TTTCATCAAAATTTACAAA--CTTGACATGTTAAT-TAGA-CTACTCTCACATG--AGGTTGACT
* * *** * * *** * **
7627382 -TAATTAGACTTCTCTCACACG-AGGTTGACTATAAT-TGA-ATCTTACAGGAAGAAAGTCTATG
229 ATAATT-GACATCT-T-ACATGAAGAAAGACTATGATATGATAT-TAACCTTATGGTAGTCTA-G
* * * ** * * ** *
7627443 A-T-ATGA-TATTTACCTTGTGGTAG-T--CTAGAGTAATGATTATTAGTTTTTA-ATAGATTGC
289 AGTAACGACTA-TTAGCTTTTAATAGATGGCTA-A-AAATG-GTA--A--TTACAGAT-CATT--
* * ** * * * ** * *
7627501 TA-AAAATGGTA-ATTACAAATCATTTATCAAATGAC-ACTCA--ACTCTATATGTGT-TCTCTA
343 TATCAAAT-G-ACACT-CAACCCAATCAGC-GTTGACTAC-CATTA-T-TA-ATGT-TATTTTTA
** **
7627560 CCATTA
399 -TTTGG
* * * **
7627566 TTAATGCTATTTTTACTTTGTTAATACATGTTATTTGTCGTTTCTTTTATTATTATAAAAAAAAC
1 TTAA-------------------A-ACATGCTATTAGTTGTTTCTTTCGTTATTAT-AAAAAAA-
* * * * * *
7627631 TATATTATTGGTCATTATAATTAGATAAGATTTAAATTTTAGTCTCTATACTTAAATGGTTAAAA
44 TATGTTATTGGTCTTTATACTTAGATAAGATTTAAAATTTAGTCTATATACTTAAATGGCTAAAA
* *
7627696 CATAAGCCCTCTCGCTCTTCTAATTTAAAAATCACAGCCCCATCAGTAAAATTCTTAGTATTTTC
109 CATAAGCCCTCTCGCTTTTCTAATTTAAAAATCACAGCCCCATCAGTAAAATTATTAGTATTTTC
* * *
7627761 ATCGAAATTTACAAACTTGACATGTTAATTAGACTACTCTCACATAAGGTTTACTATAATTGACA
174 ATCAAAATTTACAAACTTGACATGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGACA
* * * *
7627826 TTTTACATGGAGAATGACTATGGTATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAG
239 TCTTACATGAAGAAAGACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAG
* * * *
7627891 ATTTTAATAGGTGACTAAAAATGGTAATTATAGATCATTTATCAAATGACACTCAACCCAATC--
304 CTTTTAATAGATGGCTAAAAATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCAG
* *
7627954 CGTGGTCGGTACCATTATTAATGTTATTTTTATTTGG
369 CGTTGAC--TACCATTATTAATGTTATTTTTATTTGG
* ** * * * *
7627991 TTAAAACATGCTATTTGTAATTTCTTTCGTTATTAT-AAAAAACATGGTATTGGTCATTGTACTT
1 TTAAAACATGCTATTAGTTGTTTCTTTCGTTATTATAAAAAAATATGTTATTGGTCTTTATACTT
* * * * * * * * * *
7628055 GGATAAGATTTAAAAATTAGTATTTGTACTTAAATGGTTAAAACTTAAGGCTTAT-GACTTTTCT
66 AGATAAGATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCG-CTTTTCT
* *** * * * *
7628119 AATTTGAAAATCACAGTTTCATC-GTTAAAATTATTTGCAATTTCATCAAAATTTGCAAACTTGA
130 AATTTAAAAATCACAGCCCCATCAG-TAAAATTATTAGTATTTTCATCAAAATTTACAAACTTGA
* * * * *
7628183 CATATTGATTAAATTACTCTCACATGAGGTTGACTATAATTGACATCTTACAAGAAGAAAGACTA
194 CATGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGACATCTTACATGAAGAAAGACTA
* * * * **
7628248 TGACATGCTATTAACCTTATGGTAGTCTAGAGTAACAACTGTTAGCTTTTAATAGATCACTAAAA
259 TGATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCTAAAA
* * **
7628313 ATTGTAATTACAGATTATTTATCAAATGACACTCAACCCAATTC-GTC-TTGGTTACCATTATTA
324 ATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAA-TCAG-CGTTGACTACCATTATTA
* *
7628376 ATGTTATTTTTACTTAG
387 ATGTTATTTTTATTTGG
* * ** * *
7628393 TTAAAACATGTTATTAATTGTTTCTTTCGTTATTAT-AAAAAATATGTTATTGGTCACTATGCGT
1 TTAAAACATGCTATTAGTTGTTTCTTTCGTTATTATAAAAAAATATGTTATTGGTCTTTATACTT
* * *** ** * * * *
7628457 AGATACGATTTAAAATTTATTCTCCGTACTTAAATGTTTAAAACATAAGCCCTTTTGCCTGTCTA
66 AGATAAGATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTA
* **
7628522 ATTTAAAAATCACAACCCCGCCAGTAAAATTATTAGTATTTTCATCAAAATTTACAAACTTGACA
131 ATTTAAAAATCACAGCCCCATCAGTAAAATTATTAGTATTTTCATCAAAATTTACAAACTTGACA
* ** * * * *
7628587 TGTTGATTAGACTTTTCTCACATGAGATTGACTATAATTAACATCGTAAATGAAGAAAGACTATG
196 TGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGACATCTTACATGAAGAAAGACTATG
* * *
7628652 ATATGATATTAAACTTATGGTAGTCTAGAGTAACGACTATTAGTTTTTCATAGATGGCTAAAAAA
261 ATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCT-AAAAA
* * * *
7628717 T-GTAATTACAGATCATTTATCAAATGACACTCAACCCAATCCGTGTTCG-TTGCCATTATTAAT
325 TGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCAGCGTT-GACTACCATTATTAAT
*
7628780 GTTATTTTTACTTGG
389 GTTATTTTTATTTGG
* * * *
7628795 TCT-AAGCATGTTATTA-TTCGTTT-ATT--TTGTTATAAAAAAAT-TGTTATTGGT-TATTATA
1 T-TAAAACATGCTATTAGTT-GTTTCTTTCGTTATTATAAAAAAATATGTTATTGGTCT-TTATA
* * * * * * * * *
7628853 TTTAAATAAAATTTAAAATTTAGACTTTGTACTTAAATGGTTAAAACATTAGCCCTCTTGCTTTT
63 CTTAGATAAGATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTT
* ** * *
7628918 CTAATTTAAAAATCACATCCTAATCAATAAAATTATTAGTATTTTCATCAAAAATTACAAACTTG
128 CTAATTTAAAAATCACAGCCCCATCAGTAAAATTATTAGTATTTTCATCAAAATTTACAAACTTG
* * * * * * *
7628983 ACATTTTGATTATACTATTCTCACATGAGGTTGACTATAATTGACGTC-TACATGAAGAAATACA
193 ACATGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGACATCTTACATGAAGAAAGACT
* * *
7629047 ATGATATGATATTAAGCTTTTGGTAGTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCAAAA
258 ATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCTAAA
** * * * * * *
7629112 AATAATAATTATAGATCATTTATCAAATGACATTCAAACCAATCCGTGTTCG-CTACAATTATTA
323 AATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCAGCGTT-GACTACCATTATTA
7629176 ATGTTATTTTTATTTTGG
387 ATGTTATTTTTA-TTTGG
* * ** *
7629194 TTAAAACATGTTATTTGTAATTTCTTTCGTTACTATAAAAAAATATGTTATT
1 TTAAAACATGCTATTAGTTGTTTCTTTCGTTATTATAAAAAAATATGTTATT
7629246 AATTATTATA
Statistics
Matches: 5065, Mismatches: 855, Indels: 424
0.80 0.13 0.07
Matches are distributed among these distances:
380 60 0.01
381 182 0.04
382 79 0.02
383 1 0.00
384 1 0.00
385 2 0.00
387 2 0.00
388 1 0.00
390 2 0.00
393 2 0.00
394 1 0.00
395 1 0.00
396 1 0.00
397 8 0.00
398 136 0.03
399 191 0.04
400 91 0.02
401 209 0.04
402 1021 0.20
403 100 0.02
404 1028 0.20
405 1358 0.27
406 119 0.02
407 2 0.00
408 3 0.00
410 2 0.00
411 1 0.00
413 2 0.00
414 2 0.00
418 1 0.00
419 7 0.00
420 8 0.00
421 3 0.00
422 8 0.00
423 3 0.00
424 20 0.00
425 34 0.01
426 33 0.01
427 19 0.00
428 16 0.00
429 13 0.00
430 8 0.00
431 13 0.00
432 20 0.00
433 25 0.00
434 34 0.01
435 45 0.01
436 9 0.00
437 7 0.00
438 6 0.00
439 9 0.00
440 6 0.00
441 1 0.00
445 2 0.00
446 2 0.00
448 2 0.00
449 4 0.00
451 2 0.00
452 2 0.00
453 1 0.00
454 3 0.00
455 23 0.00
456 7 0.00
457 1 0.00
458 60 0.01
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.38
Consensus pattern (403 bp):
TTAAAACATGCTATTAGTTGTTTCTTTCGTTATTATAAAAAAATATGTTATTGGTCTTTATACTT
AGATAAGATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTA
ATTTAAAAATCACAGCCCCATCAGTAAAATTATTAGTATTTTCATCAAAATTTACAAACTTGACA
TGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGACATCTTACATGAAGAAAGACTATG
ATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCTAAAAAT
GGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCAGCGTTGACTACCATTATTAATGT
TATTTTTATTTGG
Found at i:7627273 original size:50 final size:50
Alignment explanation
Indices: 7627190--7627288 Score: 128
Period size: 50 Copynumber: 2.0 Consensus size: 50
7627180 TTGGTCATTA
* * * * *
7627190 TACTTAGATAAGATTTAAAATTTAGTTTTTATACTTAAATGGTTAAAACT
1 TACTTAGATAAGATTTAAAATTTAATCTATATACTTAAACGGCTAAAACT
*
7627240 TACTTAGATAA-ATTTTAAATTTTAATCTATATACTTAAACGGCTAAAAC
1 TACTTAGATAAGA-TTTAAAATTTAATCTATATACTTAAACGGCTAAAAC
7627289 ATAAGCCCTC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
49 1 0.02
50 41 0.98
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.41
Consensus pattern (50 bp):
TACTTAGATAAGATTTAAAATTTAATCTATATACTTAAACGGCTAAAACT
Found at i:7628380 original size:402 final size:401
Alignment explanation
Indices: 7627240--7629259 Score: 2272
Period size: 402 Copynumber: 5.0 Consensus size: 401
7627230 GGTTAAAACT
* * * * * * * **
7627240 TACTTAGATAA-ATTTTAAATTTTAATCTATATACTTAAACGGCTAAAACATAAGCCCTCTCACT
1 TACTTAGATAAGA-TTTAAAATTTAGTATCTGTACTTAAATGGTTAAAACATAAGCCCT-TTGCT
* * * * * *
7627304 TTTCTAGTTTAAAAATCACTGCCTCATGAGTAAAATTATT-GATATTTTCATCAAGATTTACATA
64 TTTCTAATTTAAAAATCACAGCCCCATCAGTAAAATTATTAG-TATTTTCATCAAAATTTACAAA
* * * *
7627368 CTTGACATGTTAATTAATTAGACTTCTCTCACACGAGGTTGACTATAATTGA-ATCTTACAGGAA
128 CTTGACATGTTGATT-A--A-ACTACTCTCACATGAGGTTGACTATAATTGACATCTTACAAGAA
* * * * * *
7627432 GAAAGTCTATGATATGATATTTACCTTGTGGTAGTCTAGAGTAATGATTATTAGTTTTTAATAGA
189 GAAAGACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGCTTTTAATAGA
* * * * **
7627497 TTGCTAAAAATGGTAATTACAAATCATTTATCAAATGACACTCAACTCTATATGTGTTC-TCTAC
254 TGGCTAAAAATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCCGTGTTCGT-TAC
* * * **
7627561 CATTATTAATGCTATTTTTACTTT-GTTAATACATGTTATTTGTCGTTTCTTTTATTATTATAAA
318 CATTATTAATGTTATTTTTA-TTTGGTTAAAACATGTTATTTGTAGTTTCTTTCGTTATTAT--A
*
7627625 AAAAACTATATTATTGGTCATTA
380 AAAAAC-ATGTTATTGGTCATTA
* * * * * *
7627648 TAATTAGATAAGATTTAAATTTTAGTCTCTATACTTAAATGGTTAAAACATAAGCCCTCTCGCTC
1 TACTTAGATAAGATTTAAAATTTAGTATCTGTACTTAAATGGTTAAAACATAAGCCCT-TTGCTT
* *
7627713 TTCTAATTTAAAAATCACAGCCCCATCAGTAAAATTCTTAGTATTTTCATCGAAATTTACAAACT
65 TTCTAATTTAAAAATCACAGCCCCATCAGTAAAATTATTAGTATTTTCATCAAAATTTACAAACT
* * * * * * * *
7627778 TGACATGTTAATTAGACTACTCTCACATAAGGTTTACTATAATTGACATTTTACATGGAGAATGA
130 TGACATGTTGATTAAACTACTCTCACATGAGGTTGACTATAATTGACATCTTACAAGAAGAAAGA
* * * *
7627843 CTATGGTATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGATTTTAATAGGTGACTA
195 CTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCTA
* * *
7627908 AAAATGGTAATTATAGATCATTTATCAAATGACACTCAACCCAATCCGTGGTCGGTACCATTATT
260 AAAATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCCGTGTTCGTTACCATTATT
* * *
7627973 AATGTTATTTTTATTTGGTTAAAACATGCTATTTGTAATTTCTTTCGTTATTATAAAAAACATGG
325 AATGTTATTTTTATTTGGTTAAAACATGTTATTTGTAGTTTCTTTCGTTATTATAAAAAACATGT
*
7628038 TATTGGTCATTG
390 TATTGGTCATTA
* * * * *
7628050 TACTTGGATAAGATTTAAAAATTAGTATTTGTACTTAAATGGTTAAAACTTAAG-GCTTATGACT
1 TACTTAGATAAGATTTAAAATTTAGTATCTGTACTTAAATGGTTAAAACATAAGCCCTT-TG-CT
* *** * * * *
7628114 TTTCTAATTTGAAAATCACAGTTTCATC-GTTAAAATTATTTGCAATTTCATCAAAATTTGCAAA
64 TTTCTAATTTAAAAATCACAGCCCCATCAG-TAAAATTATTAGTATTTTCATCAAAATTTACAAA
* *
7628178 CTTGACATATTGATTAAATTACTCTCACATGAGGTTGACTATAATTGACATCTTACAAGAAGAAA
128 CTTGACATGTTGATTAAACTACTCTCACATGAGGTTGACTATAATTGACATCTTACAAGAAGAAA
* * * * **
7628243 GACTATGACATGCTATTAACCTTATGGTAGTCTAGAGTAACAACTGTTAGCTTTTAATAGATCAC
193 GACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGCTTTTAATAGATGGC
* * * * *
7628308 TAAAAATTGTAATTACAGATTATTTATCAAATGACACTCAACCCAATTCGTCTTGGTTACCATTA
258 TAAAAATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCCGTGTTCGTTACCATTA
* * ** * *
7628373 TTAATGTTATTTTTACTTAGTTAAAACATGTTATTAATTGTTTCTTTCGTTATTATAAAAAATAT
323 TTAATGTTATTTTTATTTGGTTAAAACATGTTATTTGTAGTTTCTTTCGTTATTATAAAAAACAT
*
7628438 GTTATTGGTCACTA
388 GTTATTGGTCATTA
* * * * * * * *
7628452 TGCGTAGATACGATTTAAAATTTATTCTCCGTACTTAAATGTTTAAAACATAAGCCCTTTTGCCT
1 TACTTAGATAAGATTTAAAATTTAGTATCTGTACTTAAATGGTTAAAACATAAGCCC-TTTGCTT
* * **
7628517 GTCTAATTTAAAAATCACAACCCCGCCAGTAAAATTATTAGTATTTTCATCAAAATTTACAAACT
65 TTCTAATTTAAAAATCACAGCCCCATCAGTAAAATTATTAGTATTTTCATCAAAATTTACAAACT
* ** * * *
7628582 TGACATGTTGATTAGACTTTTCTCACATGAGATTGACTATAATTAACATCGTA-AATGAAGAAAG
130 TGACATGTTGATTAAACTACTCTCACATGAGGTTGACTATAATTGACATCTTACAA-GAAGAAAG
* * *
7628646 ACTATGATATGATATTAAACTTATGGTAGTCTAGAGTAACGACTATTAGTTTTTCATAGATGGCT
194 ACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCT
*
7628711 AAAAAAT-GTAATTACAGATCATTTATCAAATGACACTCAACCCAATCCGTGTTCGTTGCCATTA
259 -AAAAATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCCGTGTTCGTTACCATTA
* * * * *
7628775 TTAATGTTATTTTTACTTGGTCT-AAGCATGTTATTAT-TCGTTTATTTTGTTA-TA-AAAAAA-
323 TTAATGTTATTTTTATTTGGT-TAAAACATGTTATT-TGTAGTTTCTTTCGTTATTATAAAAAAC
* *
7628835 TTGTTATTGGTTATTA
386 ATGTTATTGGTCATTA
* * * * *
7628851 TATTTAAATAAAATTTAAAATTTAG-ACTTTGTACTTAAATGGTTAAAACATTAGCCCTCTTGCT
1 TACTTAGATAAGATTTAAAATTTAGTA-TCTGTACTTAAATGGTTAAAACATAAGCCCT-TTGCT
* ** * *
7628915 TTTCTAATTTAAAAATCACATCCTAATCAATAAAATTATTAGTATTTTCATCAAAAATTACAAAC
64 TTTCTAATTTAAAAATCACAGCCCCATCAGTAAAATTATTAGTATTTTCATCAAAATTTACAAAC
* * * * * *
7628980 TTGACATTTTGATTATACTATTCTCACATGAGGTTGACTATAATTGACGTC-TACATGAAGAAAT
129 TTGACATGTTGATTAAACTACTCTCACATGAGGTTGACTATAATTGACATCTTACAAGAAGAAAG
* * * *
7629044 ACAATGATATGATATTAAGCTTTTGGTAGTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCA
194 ACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCT
** * * * * *
7629109 AAAAATAATAATTATAGATCATTTATCAAATGACATTCAAACCAATCCGTGTTCGCTACAATTAT
259 AAAAATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCCGTGTTCGTTACCATTAT
* * *
7629174 TAATGTTATTTTTATTTTGGTTAAAACATGTTATTTGTAATTTCTTTCGTTACTATAAAAAAATA
324 TAATGTTATTTTTA-TTTGGTTAAAACATGTTATTTGTAGTTTCTTTCGTTATTAT-AAAAAACA
** *
7629239 TGTTATTAATTATTA
387 TGTTATTGGTCATTA
7629254 TACTTA
1 TACTTA
7629260 TCTTTGTACT
Statistics
Matches: 1368, Mismatches: 218, Indels: 57
0.83 0.13 0.03
Matches are distributed among these distances:
397 6 0.00
398 136 0.10
399 191 0.14
400 9 0.01
401 8 0.01
402 655 0.48
403 36 0.03
404 32 0.02
405 168 0.12
407 1 0.00
408 124 0.09
409 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (401 bp):
TACTTAGATAAGATTTAAAATTTAGTATCTGTACTTAAATGGTTAAAACATAAGCCCTTTGCTTT
TCTAATTTAAAAATCACAGCCCCATCAGTAAAATTATTAGTATTTTCATCAAAATTTACAAACTT
GACATGTTGATTAAACTACTCTCACATGAGGTTGACTATAATTGACATCTTACAAGAAGAAAGAC
TATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCTAA
AAATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCCGTGTTCGTTACCATTATTA
ATGTTATTTTTATTTGGTTAAAACATGTTATTTGTAGTTTCTTTCGTTATTATAAAAAACATGTT
ATTGGTCATTA
Found at i:7638832 original size:16 final size:18
Alignment explanation
Indices: 7638793--7638826 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7638783 GAAGTTTATA
7638793 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
7638810 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
7638827 AATTTAGAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:7649739 original size:14 final size:14
Alignment explanation
Indices: 7649719--7649758 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
7649709 CTGATCTGCA
*
7649719 ATATATATATGAAT
1 ATATATATATAAAT
*
7649733 TTATATATATAAAT
1 ATATATATATAAAT
*
7649747 ATATGTATATAA
1 ATATATATATAA
7649759 CTGATCTGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (14 bp):
ATATATATATAAAT
Found at i:7651628 original size:13 final size:13
Alignment explanation
Indices: 7651610--7651634 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7651600 CCGAGTATGT
7651610 CGAGGATGAAGCC
1 CGAGGATGAAGCC
7651623 CGAGGATGAAGC
1 CGAGGATGAAGC
7651635 ACGATTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.40, T:0.08
Consensus pattern (13 bp):
CGAGGATGAAGCC
Found at i:7660399 original size:15 final size:15
Alignment explanation
Indices: 7660379--7660408 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7660369 ATGTACCATA
*
7660379 AATATTAAAATAAAT
1 AATATTAAAAGAAAT
7660394 AATATTAAAAGAAAT
1 AATATTAAAAGAAAT
7660409 CAAGTAGACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (15 bp):
AATATTAAAAGAAAT
Found at i:7663280 original size:51 final size:49
Alignment explanation
Indices: 7663213--7663311 Score: 146
Period size: 49 Copynumber: 2.0 Consensus size: 49
7663203 GGTTCACTGT
7663213 AATGGAATAGAGCTGTAATAAATAATTCAAT-TGTTTGGTTGAATGGAATGG
1 AATGGAATAGAGCTGTAAT-AAT-ATTC-ATGTGTTTGGTTGAATGGAATGG
* *
7663264 AATGGAATAGAGCTGTAATAGTATTCTTGTGTTTGGTTGAATGGAATG
1 AATGGAATAGAGCTGTAATAATATTCATGTGTTTGGTTGAATGGAATG
7663312 ATGTTGTAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
48 1 0.02
49 23 0.51
50 2 0.04
51 19 0.42
ACGTcount: A:0.33, C:0.04, G:0.27, T:0.35
Consensus pattern (49 bp):
AATGGAATAGAGCTGTAATAATATTCATGTGTTTGGTTGAATGGAATGG
Found at i:7666197 original size:3 final size:3
Alignment explanation
Indices: 7666183--7666232 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
7666173 AAATGACATT
* * * *
7666183 TTA TTA TT- TTA TTA TTA TTG TTA TTA TTA ATA CTA TTG TTA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7666229 TTA T
1 TTA T
7666233 GAAATAAATT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
2 4 0.11
3 34 0.89
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:7668543 original size:51 final size:51
Alignment explanation
Indices: 7668349--7668540 Score: 312
Period size: 51 Copynumber: 3.8 Consensus size: 51
7668339 TTTTAGTACT
* *
7668349 TCTGATCAGTGACAAGTGATAAGTGATAAGTGATAGCCTCAGCTACACTTA
1 TCTGATCAGTGACAAGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTA
*
7668400 TCTGATCAGTGACAAGTGATAAGTGATAAGTGATAGCTTCAGCTACACTTA
1 TCTGATCAGTGACAAGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTA
* * * *
7668451 TCTGATCAGTGACAAGTGGCAAGTGATAAGTGCTAGATTTAGCTACACTTA
1 TCTGATCAGTGACAAGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTA
*
7668502 TCTGATCAGTGACAAGTGGCAAGTGATAAGTGATAGCTT
1 TCTGATCAGTGACAAGTGACAAGTGATAAGTGATAGCTT
7668541 TAGTCAAACT
Statistics
Matches: 133, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 133 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (51 bp):
TCTGATCAGTGACAAGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTA
Found at i:7669605 original size:3 final size:3
Alignment explanation
Indices: 7669574--7669678 Score: 74
Period size: 3 Copynumber: 34.7 Consensus size: 3
7669564 CTTTTTATAT
*
7669574 TTA TCTA TTCA TTA TTA -TA TCA TTA -TA TTA TT- TTA TTA GTT- TTGCA
1 TTA T-TA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TT--A
* * * * * *
7669620 TTA TTA TTT TTG TTG TTA TTA TTA TTA TTA ATA TTA TTA TTG TTA TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7669668 TTA TTA TTA TT
1 TTA TTA TTA TT
7669679 TATGTCTTGC
Statistics
Matches: 82, Mismatches: 11, Indels: 18
0.74 0.10 0.16
Matches are distributed among these distances:
2 8 0.10
3 64 0.78
4 8 0.10
5 2 0.02
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:7671613 original size:46 final size:44
Alignment explanation
Indices: 7671509--7671616 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
7671499 TGTCTTTGAC
** * * *
7671509 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
7671553 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
7671599 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
7671617 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:7677289 original size:44 final size:45
Alignment explanation
Indices: 7677236--7677338 Score: 127
Period size: 44 Copynumber: 2.3 Consensus size: 45
7677226 TGTCTTTGAC
* * *
7677236 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATA-TATAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
** * *
7677280 ATGGACTTACATGGCTCAATCTTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATA-TTATAAT
7677326 ATGGACTTACATG
1 ATGGACTTACATG
7677339 GCTCATTTCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 32 0.64
46 18 0.36
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (45 bp):
ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
Found at i:7677337 original size:46 final size:44
Alignment explanation
Indices: 7677258--7677343 Score: 136
Period size: 46 Copynumber: 1.9 Consensus size: 44
7677248 GAATTATTCC
*
7677258 TGTCTCCAATGCCATATATAATATGGACTTACATGGCTCAATCT
1 TGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAATCT
*
7677302 TGTCTCCAAAGCCATATTTCTAATATGGACTTACATGGCTCA
1 TGTCTCCAAAGCCATA--TATAATATGGACTTACATGGCTCA
7677344 TTTCTGTTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 15 0.39
46 23 0.61
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (44 bp):
TGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAATCT
Found at i:7678300 original size:40 final size:40
Alignment explanation
Indices: 7678238--7678332 Score: 145
Period size: 40 Copynumber: 2.3 Consensus size: 40
7678228 CTTTTCTTTC
* *
7678238 TTTCTTTCCTTCCTTCCTTCTCTGTTTCGTTTTGCTCTCTG
1 TTTCTTT-CTTTCTCCCTTCTCTGTTTCGTTTTGCTCTCTG
*
7678279 TTTCTTTCTTTCTCCCTTCTCTGTTTTGTTTTGCTCTCTG
1 TTTCTTTCTTTCTCCCTTCTCTGTTTCGTTTTGCTCTCTG
7678319 TTTCTTTTCTTTCT
1 TTTC-TTTCTTTCT
7678333 TTCTTTGTCA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
40 34 0.68
41 16 0.32
ACGTcount: A:0.00, C:0.28, G:0.08, T:0.63
Consensus pattern (40 bp):
TTTCTTTCTTTCTCCCTTCTCTGTTTCGTTTTGCTCTCTG
Found at i:7678357 original size:8 final size:8
Alignment explanation
Indices: 7678346--7678377 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
7678336 TTTGTCATAT
7678346 ATATAATA
1 ATATAATA
7678354 ATATAATA
1 ATATAATA
7678362 ATATAATA
1 ATATAATA
7678370 ATATAATA
1 ATATAATA
7678378 TAAAACATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:7680847 original size:47 final size:47
Alignment explanation
Indices: 7680793--7681127 Score: 280
Period size: 47 Copynumber: 7.1 Consensus size: 47
7680783 CAACTCTGTT
* * *
7680793 TTGGACAGCAATTATTCAACAATTTAGACAGCA-ATAATATGCTC-AAA
1 TTGGACAGC-ATTATACAACAAATTAGACAGCATA-AATATACTCAAAA
* *
7680840 TTGGACAGCATTATACATCAAATTAGACAGCTTAAATATACTCAAAA
1 TTGGACAGCATTATACAACAAATTAGACAGCATAAATATACTCAAAA
* ** * * * *
7680887 TTGGACAGCATTATATATTAAAATGGACAGCATCAATACACTCAAAA
1 TTGGACAGCATTATACAACAAATTAGACAGCATAAATATACTCAAAA
** * * * * *
7680934 TTGGACAGCATTATACATTAAAATGGACAGCATCAGTACACTCAAAA
1 TTGGACAGCATTATACAACAAATTAGACAGCATAAATATACTCAAAA
* * ** * * * *
7680981 TTGGACAACATTACACATTAAAATGGACAGCATCAATACACTCAAAA
1 TTGGACAGCATTATACAACAAATTAGACAGCATAAATATACTCAAAA
** * * * * *
7681028 TTGGACAGCATTATACATTAAAATGGACAGCATCAATACATTCAAAA
1 TTGGACAGCATTATACAACAAATTAGACAGCATAAATATACTCAAAA
** * * *
7681075 TTGGACAGCATTATACATTAAAATGGACAGCATCAATATACTCAAAA
1 TTGGACAGCATTATACAACAAATTAGACAGCATAAATATACTCAAAA
7681122 -TGGACA
1 TTGGACA
7681128 TCAAATTTGG
Statistics
Matches: 264, Mismatches: 22, Indels: 5
0.91 0.08 0.02
Matches are distributed among these distances:
46 33 0.12
47 231 0.88
ACGTcount: A:0.44, C:0.18, G:0.13, T:0.25
Consensus pattern (47 bp):
TTGGACAGCATTATACAACAAATTAGACAGCATAAATATACTCAAAA
Found at i:7680887 original size:25 final size:24
Alignment explanation
Indices: 7680827--7681127 Score: 131
Period size: 22 Copynumber: 12.9 Consensus size: 24
7680817 TAGACAGCAA
*
7680827 TAATATGCTC-AAATTGGACAGC-
1 TAATATACTCAAAATTGGACAGCT
* *
7680849 -ATTATACATC-AAATTAGACAGCT
1 TAATATAC-TCAAAATTGGACAGCT
7680872 TAAATATACTCAAAATTGGACAGCAT
1 T-AATATACTCAAAATTGGACAGC-T
*
7680898 T-ATATA-TTAAAA-TGGACAGCAT
1 TAATATACTCAAAATTGGACAGC-T
* *
7680920 CAATACACTCAAAATTGGACAGC-
1 TAATATACTCAAAATTGGACAGCT
* *
7680943 -ATTATACATTAAAA-TGGACAGCAT
1 TAATATAC-TCAAAATTGGACAGC-T
* * * *
7680967 CAGTACACTCAAAATTGGACAACAT
1 TAATATACTCAAAATTGGACAGC-T
*
7680992 TACACAT--T-AAAA-TGGACAGCAT
1 TA-ATATACTCAAAATTGGACAGC-T
* *
7681014 CAATACACTCAAAATTGGACAGC-
1 TAATATACTCAAAATTGGACAGCT
* *
7681037 -ATTATACATTAAAA-TGGACAGCAT
1 TAATATAC-TCAAAATTGGACAGC-T
* * *
7681061 CAATACATTCAAAATTGGACAGC-
1 TAATATACTCAAAATTGGACAGCT
* *
7681084 -ATTATACATTAAAA-TGGACAGCAT
1 TAATATAC-TCAAAATTGGACAGC-T
*
7681108 CAATATACTCAAAA-TGGACA
1 TAATATACTCAAAATTGGACA
7681128 TCAAATTTGG
Statistics
Matches: 214, Mismatches: 37, Indels: 54
0.70 0.12 0.18
Matches are distributed among these distances:
21 7 0.03
22 71 0.33
23 29 0.14
24 38 0.18
25 66 0.31
26 3 0.01
ACGTcount: A:0.45, C:0.18, G:0.13, T:0.25
Consensus pattern (24 bp):
TAATATACTCAAAATTGGACAGCT
Found at i:7680935 original size:94 final size:94
Alignment explanation
Indices: 7680837--7681127 Score: 467
Period size: 94 Copynumber: 3.1 Consensus size: 94
7680827 TAATATGCTC
* * * * * *
7680837 AAATTGGACAGCATTATACATCAAATTAGACAGCTTAAATATACTCAAAATTGGACAGCATTATA
1 AAATTGGACAGCATTATACATTAAAATGGACAGCATCAATACACTCAAAATTGGACAGCATTATA
*
7680902 TATTAAAATGGACAGCATCAATACACTCA
66 CATTAAAATGGACAGCATCAATACACTCA
* * *
7680931 AAATTGGACAGCATTATACATTAAAATGGACAGCATCAGTACACTCAAAATTGGACAACATTACA
1 AAATTGGACAGCATTATACATTAAAATGGACAGCATCAATACACTCAAAATTGGACAGCATTATA
7680996 CATTAAAATGGACAGCATCAATACACTCA
66 CATTAAAATGGACAGCATCAATACACTCA
*
7681025 AAATTGGACAGCATTATACATTAAAATGGACAGCATCAATACATTCAAAATTGGACAGCATTATA
1 AAATTGGACAGCATTATACATTAAAATGGACAGCATCAATACACTCAAAATTGGACAGCATTATA
*
7681090 CATTAAAATGGACAGCATCAATATACTCA
66 CATTAAAATGGACAGCATCAATACACTCA
7681119 AAA-TGGACA
1 AAATTGGACA
7681128 TCAAATTTGG
Statistics
Matches: 182, Mismatches: 15, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
93 6 0.03
94 176 0.97
ACGTcount: A:0.45, C:0.18, G:0.13, T:0.24
Consensus pattern (94 bp):
AAATTGGACAGCATTATACATTAAAATGGACAGCATCAATACACTCAAAATTGGACAGCATTATA
CATTAAAATGGACAGCATCAATACACTCA
Found at i:7681048 original size:141 final size:141
Alignment explanation
Indices: 7680837--7681127 Score: 467
Period size: 141 Copynumber: 2.1 Consensus size: 141
7680827 TAATATGCTC
* * * * *
7680837 AAATTGGACAGCATTATACATCAAATTAGACAGCTTAAATATACTCAAAATTGGACAGCATTATA
1 AAATTGGACAACATTACACATCAAAATAGACAGCATAAATACACTCAAAATTGGACAGCATTATA
*
7680902 TATTAAAATGGACAGCATCAATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCAT
66 CATTAAAATGGACAGCATCAATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCAT
*
7680967 CAGTACACTCA
131 CAATACACTCA
* * *
7680978 AAATTGGACAACATTACACATTAAAATGGACAGCATCAATACACTCAAAATTGGACAGCATTATA
1 AAATTGGACAACATTACACATCAAAATAGACAGCATAAATACACTCAAAATTGGACAGCATTATA
*
7681043 CATTAAAATGGACAGCATCAATACATTCAAAATTGGACAGCATTATACATTAAAATGGACAGCAT
66 CATTAAAATGGACAGCATCAATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCAT
*
7681108 CAATATACTCA
131 CAATACACTCA
7681119 AAA-TGGACA
1 AAATTGGACA
7681128 TCAAATTTGG
Statistics
Matches: 138, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
140 6 0.04
141 132 0.96
ACGTcount: A:0.45, C:0.18, G:0.13, T:0.24
Consensus pattern (141 bp):
AAATTGGACAACATTACACATCAAAATAGACAGCATAAATACACTCAAAATTGGACAGCATTATA
CATTAAAATGGACAGCATCAATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCAT
CAATACACTCA
Found at i:7682146 original size:28 final size:26
Alignment explanation
Indices: 7682114--7682211 Score: 133
Period size: 28 Copynumber: 3.6 Consensus size: 26
7682104 TTAATAAGTA
*
7682114 CGCACACTTAGTGCTTAATAATCAAACT
1 CGCACACTTAGTGCTT--TAATTAAACT
*
7682142 CGCACACTTAGTGCTTTACATTATACT
1 CGCACACTTAGTGCTTTA-ATTAAACT
7682169 CGCACACTTAGTGCATTTCAATTAAACT
1 CGCACACTTAGTGC-TTT-AATTAAACT
7682197 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
7682212 AATCTCATTA
Statistics
Matches: 64, Mismatches: 3, Indels: 7
0.86 0.04 0.09
Matches are distributed among these distances:
26 2 0.03
27 21 0.33
28 40 0.62
29 1 0.02
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.32
Consensus pattern (26 bp):
CGCACACTTAGTGCTTTAATTAAACT
Found at i:7687681 original size:21 final size:21
Alignment explanation
Indices: 7687655--7687710 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
7687645 AACAGCGGTG
*
7687655 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
7687676 GCGGTGAGATTAGATACTGTA
1 GCGGTGAGATTAGATACTGTA
*
7687697 GCAGTGAGATTAGA
1 GCGGTGAGATTAGA
7687711 AACAGCGGTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.29, C:0.09, G:0.34, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:7690709 original size:6 final size:6
Alignment explanation
Indices: 7690698--7690741 Score: 70
Period size: 6 Copynumber: 7.2 Consensus size: 6
7690688 TTTGCAACCC
*
7690698 AAGGGG AAGGGG AAAGGG AAGGGG AAGGGG AAGGGG AAAGGGG A
1 AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG -AAGGGG A
7690742 GAAGAAGGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
6 29 0.83
7 6 0.17
ACGTcount: A:0.39, C:0.00, G:0.61, T:0.00
Consensus pattern (6 bp):
AAGGGG
Found at i:7692717 original size:17 final size:18
Alignment explanation
Indices: 7692690--7692723 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7692680 AGATTGTTTT
*
7692690 TAAAAATATTTTAAAATA
1 TAAAAATATTTCAAAATA
7692708 TAAAAA-ATTTCAAAAT
1 TAAAAATATTTCAAAAT
7692724 TTATTGTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (18 bp):
TAAAAATATTTCAAAATA
Found at i:7701702 original size:5 final size:5
Alignment explanation
Indices: 7701692--7701730 Score: 69
Period size: 5 Copynumber: 7.8 Consensus size: 5
7701682 TGGGCTGCTA
*
7701692 GACCT GACCT GACCT GACCT GACCT GACCT GATCT GACC
1 GACCT GACCT GACCT GACCT GACCT GACCT GACCT GACC
7701731 AGTGAGTCAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.21, C:0.38, G:0.21, T:0.21
Consensus pattern (5 bp):
GACCT
Found at i:7704444 original size:615 final size:618
Alignment explanation
Indices: 7702405--7705598 Score: 3906
Period size: 612 Copynumber: 5.1 Consensus size: 618
7702395 ATTCTAAAAT
* * *
7702405 ATTGAAGGCATTTGAAAATGGTCGTTGAAAAAAGATTATTATTTCAGTGCTAATAGGATTATGAG
1 ATTGAAGGCATTT-AGAATGGTCGTTG--AAAA-CTTATTAATTCAGTGCTAATAGGATTATGAG
* * * *
7702470 TGATATGATTAAATATTTTTTTATTTTTAATTTTCTAAATGATCCATAAGCCGACAATAAGATAA
62 TGATATGATTAAATATCTTTTCATTTTTAACTTTCCAAATGATCCATAAGCCGACAATAAGATAA
*
7702535 GTAAAGAACTCGTGATCTGTGTCACTAATAGCATCAATTGTATCAAGTCAA-CCTCATAGATTTT
127 GTAAAGAACTCGTGATCTGTGTCACTAATAGCATCAATTGTATCAAGTCAACCCT-GTAGATTTT
** * * *
7702599 GCGGTAACATCATGTGATGTAACTCATCCAATCTG-GATGACAGATGGCATCGAAACCAAACTAC
191 GAAGTAACGTCATGTGACGTAACTCATCCAATCTGAG-TGACAGATGGCATCAAAACCAAACTAC
* * * * *
7702663 TTAGCAAAATTACATTCATTGAATAACTTCTCGACAGTTTCGTTATACTCTTAACTCAAAGGACA
255 CTAGCAAAATTACATTCCTTGAATAACTTCTCGACAGTTTCGTTATGCTCCTAACACAAAGGACA
* *
7702728 TTCTGAAAGTGCATTAATTGAGCCATTCTGTAGCTCCA-TCATGTGGGAAGATGATTATGACAAA
320 TTCTGAAAGTGCATTAATTGAGCCCTTCTGTAGCTCCATTCATGTGGGAAGATGATTATGGCAAA
* * *
7702792 GTTTCCAAAAATAAAAAAAGTACCAGTATCTTGAATTTTTGAAATAACACAATCCCACTTTTATC
385 GTTTCCAAAAATAAAAAAAGTACCAATATCTTGAATTGTTGAAATAACACAATCCCACTTATATC
* * * *
7702857 TTTTGTAAAGAAATATATTTGGTATTGTTTAATGACGTAGGCATAATTTGTCAAGCCTCGTTAAA
450 TTTTGTAATGAAATATATTTGGTATTGTTTGATGACGTAGGCGTAATTTGTCGAGCCTCGTTAAA
* * * * *
7702922 TTTTTCATGTTCATTATTGTAATTTTGTAGGGTACAATTGAGATGATATATTGTGCTACTAGAAT
515 TTTCTCGTGTTC---A--G--A-----T----T---ATTGTGATGATATATTGTGTTATTAGAAT
* * * *
7702987 GAATTATAGGGAGATTTTTTCTAGGAGGTTAGGTTTTAAAACACTCAGATTTTGTCTG
561 AAATTATAGGGAGATTCTGTCTAGGAGGTTAGGTTTTAAAACACTCAGATTTAGTCTG
* * * *
7703045 ATTGAAGGCATTTAGAATGGTTGTTGAAAGCATATTACTTCAGTGCTAATAGGATTATGAGTGAT
1 ATTGAAGGCATTTAGAATGGTCGTTGAAAACTTATTAATTCAGTGCTAATAGGATTATGAGTGAT
* * *
7703110 ATGATTAAATATCTCTTCATTTTTAACTTTCCAAATGATCCATAAGCTGACAATAAAATAAGTAA
66 ATGATTAAATATCTTTTCATTTTTAACTTTCCAAATGATCCATAAGCCGACAATAAGATAAGTAA
* * * * * *
7703175 AGAACTCGTGGTCTATGTCACTAACAACATCAATTGTATCAAGTCAACTCTGCAGATTTTGAAGT
131 AGAACTCGTGATCTGTGTCACTAATAGCATCAATTGTATCAAGTCAACCCTGTAGATTTTGAAGT
* * * *
7703240 AACATCATGTGACGTAACTCATCCAATCTAAGTGACAGATGACATCCAAACCAAACTACCTAGCA
196 AACGTCATGTGACGTAACTCATCCAATCTGAGTGACAGATGGCATCAAAACCAAACTACCTAGCA
*
7703305 AAATTACATTCCTCGAATAACTTCTCGACAGTTTCGTTATGCTCCTAACACAAAGGACATTCTGA
261 AAATTACATTCCTTGAATAACTTCTCGACAGTTTCGTTATGCTCCTAACACAAAGGACATTCTGA
* * * *
7703370 AAATGCATTAATTGAGCCCTTTTGTAGCTCAATTCATGTGGGAAGATGATTATGGTAAAGTTTCC
326 AAGTGCATTAATTGAGCCCTTCTGTAGCTCCATTCATGTGGGAAGATGATTATGGCAAAGTTTCC
*
7703435 AAAAAT-AGAAAAGTA-C-----C----A-----G---------AATCCCACTTATATCTTTTGT
391 AAAAATAAAAAAAGTACCAATATCTTGAATTGTTGAAATAACACAATCCCACTTATATCTTTTGT
* * * * *
7703475 AATGAAATATATTTGGTATTGTTTGATGACGCAGGTGTAATTTATCGAGCCTCGATAAATTTCTT
456 AATGAAATATATTTGGTATTGTTTGATGACGTAGGCGTAATTTGTCGAGCCTCGTTAAATTTCTC
*
7703540 GTATTCTTTATTGTTATTTTGCAGGGTACAATTGTGATGATATATTGTGTTATTAGAATAAATTA
521 GTGTTC---A--G--A---T------T---ATTGTGATGATATATTGTGTTATTAGAATAAATTA
* * * *
7703605 TAGGGGGAATCTG-CTTAGGAGGTTAGGTTTTAAAACACTTAGATTTAGTCTA
567 TAGGGAGATTCTGTC-TAGGAGGTTAGGTTTTAAAACACTCAGATTTAGTCTG
* * * *
7703657 ATTCAAGGCATTGAGAATGGTCGTTGAAAGA-TTATTAATTCACTGCTAATAGGATTATGACTGA
1 ATTGAAGGCATTTAGAATGGTCGTTGAAA-ACTTATTAATTCAGTGCTAATAGGATTATGAGTGA
* * *
7703721 TATGATTAAATATATTTTCATTTTTAACTTTCCAAATGATTCATAAGCCGACAATAAGATAGGTA
65 TATGATTAAATATCTTTTCATTTTTAACTTTCCAAATGATCCATAAGCCGACAATAAGATAAGTA
* * *
7703786 GAGAACTCGTGATCTGTGTCACTAATAGCATCAATTGTATCAAGTCAACCCTATAAATTTTGAAG
130 AAGAACTCGTGATCTGTGTCACTAATAGCATCAATTGTATCAAGTCAACCCTGTAGATTTTGAAG
* * *
7703851 TAACGTCGTGTGACGTAACTCATCCAATCTGAGTGACAGATGGCATCCAAACCAAACTACCTAAC
195 TAACGTCATGTGACGTAACTCATCCAATCTGAGTGACAGATGGCATCAAAACCAAACTACCTAGC
*
7703916 AAAATTACATTCCTTGAATAACTTCTCGACAGTTTCGTTATGCTCTTAACACAAAGGACATTCTG
260 AAAATTACATTCCTTGAATAACTTCTCGACAGTTTCGTTATGCTCCTAACACAAAGGACATTCTG
* * * *
7703981 AAAGTGCATTAATTGAGCCCTTCTGTAGCTCTATTAATGTGGAAAGATGATTATGACAAAGTTTC
325 AAAGTGCATTAATTGAGCCCTTCTGTAGCTCCATTCATGTGGGAAGATGATTATGGCAAAGTTTC
* *
7704046 TAAAAATAAAAAAAGTACCAATATCTTGAATTGTTGAAATAAAACAATCCCACTT-TATCTTTTG
390 CAAAAATAAAAAAAGTACCAATATCTTGAATTGTTGAAATAACACAATCCCACTTATATCTTTTG
*
7704110 TAATGAGATATATTTGGTATTGTTTGATGACGTAGGCGTAATTTGTCGAGCCTCGTTAAATTTCT
455 TAATGAAATATATTTGGTATTGTTTGATGACGTAGGCGTAATTTGTCGAGCCTCGTTAAATTTCT
* *
7704175 CGTGTTCA-A-TATTGTGATGATATATTGTGCTATTACAATAAATTATAGGGAGATTCTGTCTAG
520 CGTGTTCAGATTATTGTGATGATATATTGTGTTATTAGAATAAATTATAGGGAGATTCTGTCTAG
* *
7704238 GAGGTTAGGTATTAAAACACTCAGATTTAGTTTG
585 GAGGTTAGGTTTTAAAACACTCAGATTTAGTCTG
* *
7704272 ATTGAAGGCATTTAGAATAGTCGTTGAAAACTTATTAATTCAGTGCTAATAGGATTATGATTGAT
1 ATTGAAGGCATTTAGAATGGTCGTTGAAAACTTATTAATTCAGTGCTAATAGGATTATGAGTGAT
7704337 ATGATTAAATATCTTTTCATTTTTAACTTTCCAAATGATCCATAAGCCGACAATAAGATAAGTAA
66 ATGATTAAATATCTTTTCATTTTTAACTTTCCAAATGATCCATAAGCCGACAATAAGATAAGTAA
* * * *
7704402 AGAACTCGTGATCTGTGTTACTAACAACATCAATTGTATCAAGTCAACCTTGTAGATTTTGAAGT
131 AGAACTCGTGATCTGTGTCACTAATAGCATCAATTGTATCAAGTCAACCCTGTAGATTTTGAAGT
7704467 AACGTCATGTGACGTAACTCATCCAATCTGAGTGACAGATGGCATCAAAACCAAACTACCTAGCA
196 AACGTCATGTGACGTAACTCATCCAATCTGAGTGACAGATGGCATCAAAACCAAACTACCTAGCA
* * * * * *
7704532 AAACTACATTCATTGAATAACTTCTAGACTA-TTTTGTTATGCTCCTAAAACAAATGACATTCTG
261 AAATTACATTCCTTGAATAACTTCTCGAC-AGTTTCGTTATGCTCCTAACACAAAGGACATTCTG
* *
7704596 AAAGTGCATTAATTGAGCCCTTCTGTAGCTCCATTCATGTGGGAAGATGATTATGGTAAAATTTC
325 AAAGTGCATTAATTGAGCCCTTCTGTAGCTCCATTCATGTGGGAAGATGATTATGGCAAAGTTTC
* * * **
7704661 TAGAAATAAAAAAAGTACCAGTATCTTGAATTGTTGAAATAGTACAATCCCACTTATATCTTTTG
390 CAAAAATAAAAAAAGTACCAATATCTTGAATTGTTGAAATAACACAATCCCACTTATATCTTTTG
* *
7704726 TAATGAAATATATTTGGTATTGTTTGACGACGTAGGCGTAATTTGTCAAGCCTCGTTAAATTTCT
455 TAATGAAATATATTTGGTATTGTTTGATGACGTAGGCGTAATTTGTCGAGCCTCGTTAAATTTCT
*
7704791 CGTGTTCTTTTTTTGTTATTTTGTAGGGTATAATTGTGATGATATATTGTGTTGTTAGAATAAAT
520 CGTGTTC----------A----G-A---T-T-ATTGTGATGATATATTGTGTTATTAGAATAAAT
* * * *
7704856 TA-AGGGAGACTCTGTCTAGGAGGTTAGGTTTTAAAACATTCAGATTTACTCTA
565 TATAGGGAGATTCTGTCTAGGAGGTTAGGTTTTAAAACACTCAGATTTAGTCTG
* * * *
7704909 ATTGAATGCATTTAGAATGGTCGTTGAAAGCTTATTCATTCAATGCTAATAGGATTATGAGTGAT
1 ATTGAAGGCATTTAGAATGGTCGTTGAAAACTTATTAATTCAGTGCTAATAGGATTATGAGTGAT
* * *
7704974 ATAATTAAATATCTTTTCATTTTTAACTTTCCAAATGATCCATAACCCAACAATAAGATAAGTAA
66 ATGATTAAATATCTTTTCATTTTTAACTTTCCAAATGATCCATAAGCCGACAATAAGATAAGTAA
* * * *
7705039 AGAACTTGTGATATGTGTCACTAATAGCATCAAGTGTATCAAGTCAACCCTGTAGATTTTGAAAT
131 AGAACTCGTGATCTGTGTCACTAATAGCATCAATTGTATCAAGTCAACCCTGTAGATTTTGAAGT
* * *
7705104 AATGTCATGTGACGTAACACATCCAATCTAAGTGACAGATGGCATCAAAACCAAACTACCTAGCA
196 AACGTCATGTGACGTAACTCATCCAATCTGAGTGACAGATGGCATCAAAACCAAACTACCTAGCA
* * * * * * *
7705169 AAATTACATTCCTTGAATAGCTTCTCGACAATTTCATTATGCTCCTAAAATAAAAGACATCCTGA
261 AAATTACATTCCTTGAATAACTTCTCGACAGTTTCGTTATGCTCCTAACACAAAGGACATTCTGA
*
7705234 AAGTGCATTAATTGAGCCCTTTTGTAGCTCCATTCATGTGGGAAGATGATTATGGCAAAGTTTCC
326 AAGTGCATTAATTGAGCCCTTCTGTAGCTCCATTCATGTGGGAAGATGATTATGGCAAAGTTTCC
** * * *
7705299 AAAAATAAAAAAAAGTATAAATATCTTGTATAGTTGAAATAGCACAATCCCACTTATATCTTTTG
391 AAAAAT-AAAAAAAGTACCAATATCTTGAATTGTTGAAATAACACAATCCCACTTATATCTTTTG
* *
7705364 TAATGAAATATATTTGGTATTGTTAGATGACGTAGGCGTAATTTG-CTGAGCCTCGTTAAATTTT
455 TAATGAAATATATTTGGTATTGTTTGATGACGTAGGCGTAATTTGTC-GAGCCTCGTTAAATTTC
* * * *
7705428 TTGTGTTCTATATTGTTATTTTGTAGGTCATAATTGTAATGATATATTGTTTTGTTAGAATAAAT
519 TCGTGTTC---------A----G-A--T--T-ATTGTGATGATATATTGTGTTATTAGAATAAAT
* *
7705493 TATAGGGAGATTCTGGCTAGGAGGTTAGGTTTTAAAACACTCAGATTTACTCTG
565 TATAGGGAGATTCTGTCTAGGAGGTTAGGTTTTAAAACACTCAGATTTAGTCTG
* * *
7705547 ATTGAAGGCATTTAGAATGATTGTT-AAAAGTTTATTAATTCAGTGCTAATAG
1 ATTGAAGGCATTTAGAATGGTCGTTGAAAA-CTTATTAATTCAGTGCTAATAG
7705599 TGTAACACCC
Statistics
Matches: 2263, Mismatches: 227, Indels: 130
0.86 0.09 0.05
Matches are distributed among these distances:
610 3 0.00
611 1 0.00
612 526 0.23
613 8 0.00
614 2 0.00
615 482 0.21
616 80 0.04
618 1 0.00
619 1 0.00
621 1 0.00
623 1 0.00
626 2 0.00
628 2 0.00
630 1 0.00
632 1 0.00
633 1 0.00
635 1 0.00
636 375 0.17
637 513 0.23
638 237 0.10
639 11 0.00
640 13 0.01
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (618 bp):
ATTGAAGGCATTTAGAATGGTCGTTGAAAACTTATTAATTCAGTGCTAATAGGATTATGAGTGAT
ATGATTAAATATCTTTTCATTTTTAACTTTCCAAATGATCCATAAGCCGACAATAAGATAAGTAA
AGAACTCGTGATCTGTGTCACTAATAGCATCAATTGTATCAAGTCAACCCTGTAGATTTTGAAGT
AACGTCATGTGACGTAACTCATCCAATCTGAGTGACAGATGGCATCAAAACCAAACTACCTAGCA
AAATTACATTCCTTGAATAACTTCTCGACAGTTTCGTTATGCTCCTAACACAAAGGACATTCTGA
AAGTGCATTAATTGAGCCCTTCTGTAGCTCCATTCATGTGGGAAGATGATTATGGCAAAGTTTCC
AAAAATAAAAAAAGTACCAATATCTTGAATTGTTGAAATAACACAATCCCACTTATATCTTTTGT
AATGAAATATATTTGGTATTGTTTGATGACGTAGGCGTAATTTGTCGAGCCTCGTTAAATTTCTC
GTGTTCAGATTATTGTGATGATATATTGTGTTATTAGAATAAATTATAGGGAGATTCTGTCTAGG
AGGTTAGGTTTTAAAACACTCAGATTTAGTCTG
Found at i:7705446 original size:637 final size:638
Alignment explanation
Indices: 7704185--7705598 Score: 2197
Period size: 637 Copynumber: 2.2 Consensus size: 638
7704175 CGTGTTCAAT
* * * *
7704185 ATTGTGATGATATATTGTGCTATTACAATAAATTATAGGGAGATTCTGTCTAGGAGGTTAGGTAT
1 ATTGTGATGATATATTGTGTTGTTAGAATAAATTATAGGGAGATTCTGTCTAGGAGGTTAGGTTT
* * * *
7704250 TAAAACACTCAGATTTAGTTTGATTGAAGGCATTTAGAATAGTCGTTGAAAACTTATTAATTCAG
66 TAAAACACTCAGATTTACTCTGATTGAAGGCATTTAGAATGGTCGTTGAAAGCTTATTAATTCAG
* *
7704315 TGCTAATAGGATTATGATTGATATGATTAAATATCTTTTCATTTTTAACTTTCCAAATGATCCAT
131 TGCTAATAGGATTATGAGTGATATAATTAAATATCTTTTCATTTTTAACTTTCCAAATGATCCAT
* * * * *
7704380 AAGCCGACAATAAGATAAGTAAAGAACTCGTGATCTGTGTTACTAACAACATCAATTGTATCAAG
196 AACCCAACAATAAGATAAGTAAAGAACTCGTGATATGTGTCACTAACAACATCAAGTGTATCAAG
* * * *
7704445 TCAACCTTGTAGATTTTGAAGTAACGTCATGTGACGTAACTCATCCAATCTGAGTGACAGATGGC
261 TCAACCCTGTAGATTTTGAAATAACGTCATGTGACGTAACACATCCAATCTAAGTGACAGATGGC
* **
7704510 ATCAAAACCAAACTACCTAGCAAAACTACATTCATTGAATAACTTCTAGACTATTTTGTTATGCT
326 ATCAAAACCAAACTACCTAGCAAAACTACATTCATTGAATAACTTCTAGACAATTTCATTATGCT
* *
7704575 CCTAAAACAAATGACATTCTGAAAGTGCATTAATTGAGCCCTTCTGTAGCTCCATTCATGTGGGA
391 CCTAAAACAAAAGACATCCTGAAAGTGCATTAATTGAGCCCTTCTGTAGCTCCATTCATGTGGGA
* * * * * * *
7704640 AGATGATTATGGTAAAATTTCTAGAAATAAAAAAAGTACCAGTATCTTGAATTGTTGAAATAGTA
456 AGATGATTATGGCAAAATTTCCAAAAATAAAAAAAGTACAAATATCTTGAATAGTTGAAATAGCA
*
7704705 CAATCCCACTTATATCTTTTGTAATGAAATATATTTGGTATTGTTTGACGACGTAGGCGTAATTT
521 CAATCCCACTTATATCTTTTGTAATGAAATATATTTGGTATTGTTAGACGACGTAGGCGTAATTT
* *
7704770 GTCAAGCCTCGTTAAATTTCTCGTGTTCTTTTTTTGTTATTTTGTAGGGT-ATA
586 GTCAAGCCTCGTTAAATTTCTCGTGTTCTTATATTGTTATTTTGTA-GGTCATA
*
7704823 ATTGTGATGATATATTGTGTTGTTAGAATAAATTA-AGGGAGACTCTGTCTAGGAGGTTAGGTTT
1 ATTGTGATGATATATTGTGTTGTTAGAATAAATTATAGGGAGATTCTGTCTAGGAGGTTAGGTTT
* * * * *
7704887 TAAAACATTCAGATTTACTCTAATTGAATGCATTTAGAATGGTCGTTGAAAGCTTATTCATTCAA
66 TAAAACACTCAGATTTACTCTGATTGAAGGCATTTAGAATGGTCGTTGAAAGCTTATTAATTCAG
7704952 TGCTAATAGGATTATGAGTGATATAATTAAATATCTTTTCATTTTTAACTTTCCAAATGATCCAT
131 TGCTAATAGGATTATGAGTGATATAATTAAATATCTTTTCATTTTTAACTTTCCAAATGATCCAT
* * *
7705017 AACCCAACAATAAGATAAGTAAAGAACTTGTGATATGTGTCACTAATAGCATCAAGTGTATCAAG
196 AACCCAACAATAAGATAAGTAAAGAACTCGTGATATGTGTCACTAACAACATCAAGTGTATCAAG
*
7705082 TCAACCCTGTAGATTTTGAAATAATGTCATGTGACGTAACACATCCAATCTAAGTGACAGATGGC
261 TCAACCCTGTAGATTTTGAAATAACGTCATGTGACGTAACACATCCAATCTAAGTGACAGATGGC
* * * *
7705147 ATCAAAACCAAACTACCTAGCAAAATTACATTCCTTGAATAGCTTCTCGACAATTTCATTATGCT
326 ATCAAAACCAAACTACCTAGCAAAACTACATTCATTGAATAACTTCTAGACAATTTCATTATGCT
* *
7705212 CCTAAAATAAAAGACATCCTGAAAGTGCATTAATTGAGCCCTTTTGTAGCTCCATTCATGTGGGA
391 CCTAAAACAAAAGACATCCTGAAAGTGCATTAATTGAGCCCTTCTGTAGCTCCATTCATGTGGGA
* * *
7705277 AGATGATTATGGCAAAGTTTCCAAAAATAAAAAAAAGTATAAATATCTTGTATAGTTGAAATAGC
456 AGATGATTATGGCAAAATTTCCAAAAAT-AAAAAAAGTACAAATATCTTGAATAGTTGAAATAGC
*
7705342 ACAATCCCACTTATATCTTTTGTAATGAAATATATTTGGTATTGTTAGATGACGTAGGCGTAATT
520 ACAATCCCACTTATATCTTTTGTAATGAAATATATTTGGTATTGTTAGACGACGTAGGCGTAATT
* * *
7705407 TG-CTGAGCCTCGTTAAATTTTTTGTGTTC-TATATTGTTATTTTGTAGGTCATA
585 TGTC-AAGCCTCGTTAAATTTCTCGTGTTCTTATATTGTTATTTTGTAGGTCATA
* * *
7705460 ATTGTAATGATATATTGTTTTGTTAGAATAAATTATAGGGAGATTCTGGCTAGGAGGTTAGGTTT
1 ATTGTGATGATATATTGTGTTGTTAGAATAAATTATAGGGAGATTCTGTCTAGGAGGTTAGGTTT
* * * *
7705525 TAAAACACTCAGATTTACTCTGATTGAAGGCATTTAGAATGATTGTTAAAAGTTTATTAATTCAG
66 TAAAACACTCAGATTTACTCTGATTGAAGGCATTTAGAATGGTCGTTGAAAGCTTATTAATTCAG
7705590 TGCTAATAG
131 TGCTAATAG
7705599 TGTAACACCC
Statistics
Matches: 702, Mismatches: 70, Indels: 8
0.90 0.09 0.01
Matches are distributed among these distances:
636 3 0.00
637 458 0.65
638 241 0.34
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.36
Consensus pattern (638 bp):
ATTGTGATGATATATTGTGTTGTTAGAATAAATTATAGGGAGATTCTGTCTAGGAGGTTAGGTTT
TAAAACACTCAGATTTACTCTGATTGAAGGCATTTAGAATGGTCGTTGAAAGCTTATTAATTCAG
TGCTAATAGGATTATGAGTGATATAATTAAATATCTTTTCATTTTTAACTTTCCAAATGATCCAT
AACCCAACAATAAGATAAGTAAAGAACTCGTGATATGTGTCACTAACAACATCAAGTGTATCAAG
TCAACCCTGTAGATTTTGAAATAACGTCATGTGACGTAACACATCCAATCTAAGTGACAGATGGC
ATCAAAACCAAACTACCTAGCAAAACTACATTCATTGAATAACTTCTAGACAATTTCATTATGCT
CCTAAAACAAAAGACATCCTGAAAGTGCATTAATTGAGCCCTTCTGTAGCTCCATTCATGTGGGA
AGATGATTATGGCAAAATTTCCAAAAATAAAAAAAGTACAAATATCTTGAATAGTTGAAATAGCA
CAATCCCACTTATATCTTTTGTAATGAAATATATTTGGTATTGTTAGACGACGTAGGCGTAATTT
GTCAAGCCTCGTTAAATTTCTCGTGTTCTTATATTGTTATTTTGTAGGTCATA
Found at i:7707022 original size:50 final size:50
Alignment explanation
Indices: 7706910--7707158 Score: 318
Period size: 50 Copynumber: 4.8 Consensus size: 50
7706900 GATAATAACA
* * * **
7706910 TGCCAAAGCCATGTCCTAGATATGGTCTTACATGGGATGTTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * *
7706961 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * *
7707011 TGCCAACGCCATGTCCCAGGCATTGTCTTACATGGGACCTCTCATCTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
7707061 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATGATCTCAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC--GG
*
7707116 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
7707159 TTACCTAAAT
Statistics
Matches: 172, Mismatches: 20, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
50 94 0.55
51 31 0.18
53 5 0.03
55 1 0.01
56 41 0.24
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:7715176 original size:13 final size:13
Alignment explanation
Indices: 7715158--7715221 Score: 119
Period size: 13 Copynumber: 4.9 Consensus size: 13
7715148 ACACTCAAAA
7715158 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
7715171 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
*
7715184 TTCTGAAAAGCAC
1 TTCTCAAAAGCAC
7715197 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
7715210 TTCTCAAAAGCA
1 TTCTCAAAAGCA
7715222 ATGAAGAACT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 49 1.00
ACGTcount: A:0.39, C:0.28, G:0.09, T:0.23
Consensus pattern (13 bp):
TTCTCAAAAGCAC
Found at i:7715747 original size:19 final size:21
Alignment explanation
Indices: 7715719--7715767 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
7715709 GGTTTTTTAC
*
7715719 TAAAATAATA-CAAAAGAA-A
1 TAAAAAAATACCAAAAGAATA
*
7715738 TAAAAAAATACCAAAATAATA
1 TAAAAAAATACCAAAAGAATA
7715759 TAAAAAAAT
1 TAAAAAAAT
7715768 TATTTACCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 9 0.35
20 7 0.27
21 10 0.38
ACGTcount: A:0.73, C:0.06, G:0.02, T:0.18
Consensus pattern (21 bp):
TAAAAAAATACCAAAAGAATA
Found at i:7715855 original size:27 final size:27
Alignment explanation
Indices: 7715813--7715875 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
7715803 GGTAATGGAA
*
7715813 TGGCGGCACCGATGGTGCCATTCTCAT
1 TGGCGGCACCGATGGTGCCATTCCCAT
*
7715840 TGGCGGCACCGGTGGTGCCATTCCCAT
1 TGGCGGCACCGATGGTGCCATTCCCAT
7715867 TGGCGGCAC
1 TGGCGGCAC
7715876 AGGACTAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.13, C:0.32, G:0.33, T:0.22
Consensus pattern (27 bp):
TGGCGGCACCGATGGTGCCATTCCCAT
Found at i:7717684 original size:18 final size:20
Alignment explanation
Indices: 7717645--7717691 Score: 62
Period size: 19 Copynumber: 2.4 Consensus size: 20
7717635 TGGTAAATAA
7717645 ATTTTTTATATTATTTTGGT
1 ATTTTTTATATTATTTTGGT
*
7717665 ATTTTTTAT-TTCTTTT-GT
1 ATTTTTTATATTATTTTGGT
7717683 ATTATTTTA
1 ATT-TTTTA
7717692 ATAAAAAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 5 0.20
19 11 0.44
20 9 0.36
ACGTcount: A:0.19, C:0.02, G:0.06, T:0.72
Consensus pattern (20 bp):
ATTTTTTATATTATTTTGGT
Found at i:7724106 original size:19 final size:19
Alignment explanation
Indices: 7724082--7724120 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7724072 GCTTAACTTC
7724082 AAATTA-ATGATAAATTTTA
1 AAATTATAT-ATAAATTTTA
*
7724101 AAATTATATATGAATTTTA
1 AAATTATATATAAATTTTA
7724120 A
1 A
7724121 TTACATATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 16 0.89
20 2 0.11
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (19 bp):
AAATTATATATAAATTTTA
Found at i:7724162 original size:27 final size:28
Alignment explanation
Indices: 7724105--7724166 Score: 83
Period size: 27 Copynumber: 2.2 Consensus size: 28
7724095 ATTTTAAAAT
*
7724105 TATATATGAATTTTAATTACATATTATA
1 TATATATGAATTTTAATTACATATTAAA
*
7724133 TATATAT-AATTTTAATTATAGT-TTAAA
1 TATATATGAATTTTAATTACA-TATTAAA
7724160 TATATAT
1 TATATAT
7724167 TTAAATTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.74
28 8 0.26
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.52
Consensus pattern (28 bp):
TATATATGAATTTTAATTACATATTAAA
Found at i:7724177 original size:31 final size:31
Alignment explanation
Indices: 7724129--7724199 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 31
7724119 AATTACATAT
* *
7724129 TATATATATATAATTTTAATTAT-AGTTTAAA
1 TATATATTTATAATTTTAATT-TGAATTTAAA
*
7724160 TATATATTTA-AATTTTTAATTTGAATTTAAT
1 TATATATTTATAA-TTTTAATTTGAATTTAAA
7724191 TATATATTT
1 TATATATTT
7724200 TAAAAAAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 3 0.09
31 32 0.91
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (31 bp):
TATATATTTATAATTTTAATTTGAATTTAAA
Found at i:7724281 original size:23 final size:23
Alignment explanation
Indices: 7724239--7724286 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
7724229 TATTAGATAA
*
7724239 ATATAATTATCTATGTATGTAAT
1 ATATAATTATCAATGTATGTAAT
*
7724262 ATATAATTATTCAATG-ATGTTAT
1 ATATAATTA-TCAATGTATGTAAT
7724285 AT
1 AT
7724287 GAATAATTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 17 0.77
24 5 0.23
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.48
Consensus pattern (23 bp):
ATATAATTATCAATGTATGTAAT
Found at i:7726921 original size:55 final size:55
Alignment explanation
Indices: 7726856--7726962 Score: 205
Period size: 55 Copynumber: 1.9 Consensus size: 55
7726846 TGTAGCCACC
*
7726856 TATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACTTATCACTTTGTCTCTGAT
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACTTATCACTTTGTCTCTGAT
7726911 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACTTATCACTTTGTCTCT
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACTTATCACTTTGTCTCT
7726963 TGATCAGATA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.43
Consensus pattern (55 bp):
TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACTTATCACTTTGTCTCTGAT
Found at i:7726960 original size:37 final size:37
Alignment explanation
Indices: 7726910--7726980 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
7726900 TTGTCTCTGA
7726910 TTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCAC
1 TTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCAC
7726947 TTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 TTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
7726981 TAAAGCTATC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (37 bp):
TTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCAC
Found at i:7727063 original size:98 final size:98
Alignment explanation
Indices: 7726943--7727950 Score: 1935
Period size: 98 Copynumber: 10.3 Consensus size: 98
7726933 ATAAGTGTAG
* * ** * *
7726943 CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
**
7727008 TGTCACTTGATCAGATAAGTGTAGCCGAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
*
7727041 TCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
7727106 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
7727139 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
7727204 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
7727237 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
7727302 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
7727335 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
7727400 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
7727433 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
7727498 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
7727531 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
7727596 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
7727629 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
7727694 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
7727727 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
7727792 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
7727825 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
7727890 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
7727923 CCACTTATCACTTTGTCACTTGATCAGA
1 CCACTTATCACTTTGTCACTTGATCAGA
7727951 AGTACTCAAA
Statistics
Matches: 900, Mismatches: 10, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 900 1.00
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (98 bp):
CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
Found at i:7730586 original size:23 final size:23
Alignment explanation
Indices: 7730551--7730672 Score: 154
Period size: 23 Copynumber: 5.3 Consensus size: 23
7730541 AGTATTATTG
* *
7730551 ATCAATGGTAGCTTCGGCAACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
7730574 TTCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
7730597 ATCAGTGGTAGCTTCAGCTGCAT
1 ATCAGTGGTAGCTTCGGCTACAT
* * *
7730620 TTCAGTGGTAGCTACGGCTACGT
1 ATCAGTGGTAGCTTCGGCTACAT
*
7730643 ATCAGTGGTAGCTTCGACTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
7730666 ATCAGTG
1 ATCAGTG
7730673 TGGCACTTAT
Statistics
Matches: 82, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 82 1.00
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:7730608 original size:46 final size:46
Alignment explanation
Indices: 7730551--7730672 Score: 181
Period size: 46 Copynumber: 2.7 Consensus size: 46
7730541 AGTATTATTG
* *
7730551 ATCAATGGTAGCTTCGGCAACATTTCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACGGCTACAT
* * *
7730597 ATCAGTGGTAGCTTCAGCTGCATTTCAGTGGTAGCTACGGCTACGT
1 ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACGGCTACAT
* *
7730643 ATCAGTGGTAGCTTCGACTACATATCAGTG
1 ATCAGTGGTAGCTTCGGCTACATTTCAGTG
7730673 TGGCACTTAT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 67 1.00
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (46 bp):
ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACGGCTACAT
Found at i:7733932 original size:23 final size:22
Alignment explanation
Indices: 7733889--7733932 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
7733879 TTCTAAGTCG
7733889 ATATTCAATTCAATTCCACACGT
1 ATATTCAATTCAATT-CACACGT
7733912 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
7733933 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.23, G:0.02, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACGT
Found at i:7734035 original size:45 final size:45
Alignment explanation
Indices: 7733980--7734070 Score: 130
Period size: 45 Copynumber: 2.0 Consensus size: 45
7733970 AGATACTCGT
* *
7733980 TGGATTCAGCACATAGCAACCA-CTTTATTAATCAAAGATGTCCGG
1 TGGAATCAGCACATAGCAACCACCTTT-CTAATCAAAGATGTCCGG
* *
7734025 TGGAATCAGCACATAGCAACCACCTTTCTAATCAATGATGTTCGG
1 TGGAATCAGCACATAGCAACCACCTTTCTAATCAAAGATGTCCGG
7734070 T
1 T
7734071 TCACATATTC
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
45 37 0.90
46 4 0.10
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (45 bp):
TGGAATCAGCACATAGCAACCACCTTTCTAATCAAAGATGTCCGG
Found at i:7734142 original size:51 final size:51
Alignment explanation
Indices: 7734084--7734261 Score: 202
Period size: 51 Copynumber: 3.5 Consensus size: 51
7734074 CATATTCACT
* *
7734084 TGCACATAGTACTACACATGTGACCACTACCATCCGATACACGTAGTATCC
1 TGCACATAGTACTACACACGTGACCACTACCATCCGATACACGTAGTAGCC
* * * * *
7734135 TGCACATAGTACTACACACGTGATCGA-AACTATCC-AGTACGCATAGTAGCC
1 TGCACATAGTACTACACACGTGA-CCACTACCATCCGA-TACACGTAGTAGCC
* * * *
7734186 TGCACATAGTACTACACATGCGA-C-CTATCATTCCGGTACACGTAGTAGCC
1 TGCACATAGTACTACACACGTGACCACTACCA-TCCGATACACGTAGTAGCC
7734236 TGCACATAGTACTACACACGTGACCA
1 TGCACATAGTACTACACACGTGACCA
7734262 TCACTTTCAC
Statistics
Matches: 102, Mismatches: 18, Indels: 13
0.77 0.14 0.10
Matches are distributed among these distances:
49 2 0.02
50 37 0.36
51 61 0.60
52 2 0.02
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.22
Consensus pattern (51 bp):
TGCACATAGTACTACACACGTGACCACTACCATCCGATACACGTAGTAGCC
Found at i:7740160 original size:14 final size:14
Alignment explanation
Indices: 7740138--7740168 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7740128 AAGAAAGATA
*
7740138 AAAATAATAATAAT
1 AAAACAATAATAAT
7740152 AAAACAATAATAAT
1 AAAACAATAATAAT
7740166 AAA
1 AAA
7740169 CTCAATGATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAACAATAATAAT
Found at i:7740300 original size:26 final size:27
Alignment explanation
Indices: 7740271--7740321 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
7740261 TTAAAATCTA
* *
7740271 AGTATAAGAATAATAAATAA-ATAAAT
1 AGTAAAAGAAAAATAAATAATATAAAT
*
7740297 AGTAAAATAAAAATAAATAATATAA
1 AGTAAAAGAAAAATAAATAATATAA
7740322 CAAATAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.25
Consensus pattern (27 bp):
AGTAAAAGAAAAATAAATAATATAAAT
Found at i:7740312 original size:22 final size:20
Alignment explanation
Indices: 7740273--7740355 Score: 87
Period size: 22 Copynumber: 3.9 Consensus size: 20
7740263 AAAATCTAAG
7740273 TATAAGAATAATAAATAAATAAA
1 TATAA-AATAA-AAATAAAT-AA
7740296 TAGTAAAATAAAAATAAATAA
1 TA-TAAAATAAAAATAAATAA
*
7740317 TATAACAAATAATAATAAATAA
1 TAT-A-AAATAAAAATAAATAA
7740339 TAATAAAAT-AAAATAAA
1 T-ATAAAATAAAAATAAA
7740356 ATGGGTAGCT
Statistics
Matches: 54, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
20 8 0.15
21 9 0.17
22 25 0.46
23 9 0.17
24 3 0.06
ACGTcount: A:0.71, C:0.01, G:0.02, T:0.25
Consensus pattern (20 bp):
TATAAAATAAAAATAAATAA
Found at i:7740318 original size:7 final size:7
Alignment explanation
Indices: 7740279--7740341 Score: 53
Period size: 7 Copynumber: 9.1 Consensus size: 7
7740269 TAAGTATAAG
7740279 AATAATA
1 AATAATA
7740286 AATAAATA
1 AAT-AATA
*
7740294 AATAGT-
1 AATAATA
7740300 AA-AATA
1 AATAATA
7740306 AA-AATA
1 AATAATA
7740312 AATAATA
1 AATAATA
*
7740319 TAACAA-A
1 -AATAATA
7740326 TAATAATA
1 -AATAATA
7740334 AATAATA
1 AATAATA
7740341 A
1 A
7740342 TAAAATAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
5 2 0.04
6 10 0.21
7 23 0.49
8 12 0.26
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (7 bp):
AATAATA
Found at i:7740334 original size:13 final size:12
Alignment explanation
Indices: 7740302--7740356 Score: 53
Period size: 11 Copynumber: 4.6 Consensus size: 12
7740292 TAAATAGTAA
7740302 AATAAAAATAAAT
1 AATAAAAAT-AAT
*
7740315 AATATAACA-AAT
1 AATA-AAAATAAT
7740327 AATAATAAATAAT
1 AATAA-AAATAAT
7740340 AAT-AAAATAA-
1 AATAAAAATAAT
7740350 AATAAAA
1 AATAAAA
7740357 TGGGTAGCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
10 3 0.08
11 10 0.28
12 10 0.28
13 10 0.28
14 3 0.08
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.24
Consensus pattern (12 bp):
AATAAAAATAAT
Found at i:7740348 original size:15 final size:14
Alignment explanation
Indices: 7740274--7740351 Score: 63
Period size: 15 Copynumber: 5.4 Consensus size: 14
7740264 AAATCTAAGT
*
7740274 ATAAGAATAAT-AA
1 ATAAAAATAATAAA
*
7740287 ATAAATAAATAGTAAA
1 AT-AA-AAATAATAAA
*
7740303 ATAAAAATAAATAAT
1 ATAAAAAT-AATAAA
7740318 ATAACAAATAAT--A
1 ATAA-AAATAATAAA
7740331 ATAAATAATAATAAA
1 ATAAA-AATAATAAA
7740346 ATAAAA
1 ATAAAA
7740352 TAAAATGGGT
Statistics
Matches: 52, Mismatches: 5, Indels: 15
0.72 0.07 0.21
Matches are distributed among these distances:
12 1 0.02
13 12 0.23
14 7 0.13
15 24 0.46
16 8 0.15
ACGTcount: A:0.72, C:0.01, G:0.03, T:0.24
Consensus pattern (14 bp):
ATAAAAATAATAAA
Found at i:7740356 original size:10 final size:10
Alignment explanation
Indices: 7740285--7740357 Score: 53
Period size: 10 Copynumber: 6.9 Consensus size: 10
7740275 TAAGAATAAT
7740285 AAAT-AAATA
1 AAATAAAATA
7740294 AATAGTAAAATA
1 AA-A-TAAAATA
7740306 AAA-ATAAATA
1 AAATA-AAATA
*
7740316 ATATAACAAATA
1 AAAT-A-AAATA
7740328 ATAAT-AAATA
1 A-AATAAAATA
7740338 ATAATAAAATA
1 A-AATAAAATA
7740349 AAATAAAAT
1 AAATAAAAT
7740358 GGGTAGCTTG
Statistics
Matches: 53, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
9 3 0.06
10 26 0.49
11 8 0.15
12 14 0.26
13 2 0.04
ACGTcount: A:0.73, C:0.01, G:0.01, T:0.25
Consensus pattern (10 bp):
AAATAAAATA
Found at i:7743614 original size:18 final size:19
Alignment explanation
Indices: 7743584--7743619 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
7743574 AATAAAATAA
7743584 AAACTAGAAAACAAAAATT
1 AAACTAGAAAACAAAAATT
7743603 AAACTA-AAAACAAAAAT
1 AAACTAGAAAACAAAAAT
7743620 AAAATGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.72, C:0.11, G:0.03, T:0.14
Consensus pattern (19 bp):
AAACTAGAAAACAAAAATT
Found at i:7749411 original size:12 final size:13
Alignment explanation
Indices: 7749374--7749405 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
7749364 CCACCAGGAG
*
7749374 AAAAAGAAAACAA
1 AAAAAGAAAAGAA
7749387 AAAAAGAAAAGAA
1 AAAAAGAAAAGAA
7749400 AAAAAG
1 AAAAAG
7749406 GAAGAAGCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.84, C:0.03, G:0.12, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAGAA
Found at i:7753040 original size:46 final size:46
Alignment explanation
Indices: 7752972--7753063 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
7752962 TGTCAGGGAA
*
7752972 AGAAGGCTGTGAATCAATGACAAGTTATTACATAATAATTAATAAT
1 AGAAAGCTGTGAATCAATGACAAGTTATTACATAATAATTAATAAT
7753018 AGAAAGCTGTGAATCAATGACAAGTTATTACATAATAATTAATAAT
1 AGAAAGCTGTGAATCAATGACAAGTTATTACATAATAATTAATAAT
7753064 GGTTTCAGTT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.47, C:0.09, G:0.14, T:0.30
Consensus pattern (46 bp):
AGAAAGCTGTGAATCAATGACAAGTTATTACATAATAATTAATAAT
Found at i:7765699 original size:6 final size:6
Alignment explanation
Indices: 7765690--7765723 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
7765680 GTGGTGATGT
*
7765690 GAGCGG GAGCGG GAGCGG GAGCGG GAGTGG GAGC
1 GAGCGG GAGCGG GAGCGG GAGCGG GAGCGG GAGC
7765724 AAAGCAGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.18, C:0.15, G:0.65, T:0.03
Consensus pattern (6 bp):
GAGCGG
Found at i:7766201 original size:44 final size:44
Alignment explanation
Indices: 7766129--7766222 Score: 113
Period size: 44 Copynumber: 2.1 Consensus size: 44
7766119 ACGACTAGCA
*
7766129 GAACAACGACCTCGCATCAGAGGTCAATTCGTGCGACAAACAGT
1 GAACAACGACCTCGCATCAGAGGTCAATTCATGCGACAAACAGT
* *
7766173 GAACAACGACC-CAGCATCCA-ATGG-CAATTCATGCGACGAATAGT
1 GAACAACGACCTC-GCAT-CAGA-GGTCAATTCATGCGACAAACAGT
7766217 GAACAA
1 GAACAA
7766223 GAAAAAAGCA
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
43 1 0.02
44 39 0.89
45 4 0.09
ACGTcount: A:0.37, C:0.27, G:0.21, T:0.15
Consensus pattern (44 bp):
GAACAACGACCTCGCATCAGAGGTCAATTCATGCGACAAACAGT
Found at i:7778568 original size:46 final size:46
Alignment explanation
Indices: 7778501--7778592 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
7778491 AAAAAGAAAA
*
7778501 TTACGGGCTATCAGGTCTGTTCCACTGCTAAAGGACTTTTCCCTAC
1 TTACGGGCTATCAGGTCTGTTCCACTGCTAAAGGACTGTTCCCTAC
7778547 TTACGGGCTATCAGGTCTGTTCCACTGCTAAAGGACTGTTCCCTAC
1 TTACGGGCTATCAGGTCTGTTCCACTGCTAAAGGACTGTTCCCTAC
7778593 ATTTTCACTG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.20, C:0.28, G:0.21, T:0.32
Consensus pattern (46 bp):
TTACGGGCTATCAGGTCTGTTCCACTGCTAAAGGACTGTTCCCTAC
Found at i:7780762 original size:10 final size:10
Alignment explanation
Indices: 7780729--7780782 Score: 60
Period size: 10 Copynumber: 5.5 Consensus size: 10
7780719 ATTCACATGC
7780729 ATTTTT-TTA
1 ATTTTTATTA
7780738 ATTTTTATTA
1 ATTTTTATTA
*
7780748 GTTATTTA-TA
1 ATT-TTTATTA
7780758 ATTATTTA-TA
1 ATT-TTTATTA
7780768 ATTTTTATTA
1 ATTTTTATTA
7780778 ATTTT
1 ATTTT
7780783 AAATTATTCG
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
9 10 0.25
10 26 0.65
11 4 0.10
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.69
Consensus pattern (10 bp):
ATTTTTATTA
Found at i:7788637 original size:39 final size:38
Alignment explanation
Indices: 7788594--7788671 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 38
7788584 GTTGCTCTCA
7788594 TAATTGTTTCTAACAGCATAAGCATGTATCTCTTTCCC
1 TAATTGTTTCTAACAGCATAAGCATGTATCTCTTTCCC
* *
7788632 NTAATTGTTTCTAACAGCATATGCATGTATTTCTTTCCC
1 -TAATTGTTTCTAACAGCATAAGCATGTATCTCTTTCCC
7788671 T
1 T
7788672 CCTTTCAGGT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
38 1 0.03
39 36 0.97
ACGTcount: A:0.24, C:0.22, G:0.10, T:0.42
Consensus pattern (38 bp):
TAATTGTTTCTAACAGCATAAGCATGTATCTCTTTCCC
Found at i:7791984 original size:48 final size:48
Alignment explanation
Indices: 7791918--7792013 Score: 156
Period size: 48 Copynumber: 2.0 Consensus size: 48
7791908 AGAATGAATG
* *
7791918 CCGAGACCTTAATTACGGAAGAAGTGTGACCCAACAAATTATTGCCGC
1 CCGAGACCTTAATCACGGAAGAAGTCTGACCCAACAAATTATTGCCGC
* *
7791966 CCGAGACCTTTATCACGGAAGAAGTCTGACCCAACAAGTTATTGCCGC
1 CCGAGACCTTAATCACGGAAGAAGTCTGACCCAACAAATTATTGCCGC
7792014 TATGAATATG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (48 bp):
CCGAGACCTTAATCACGGAAGAAGTCTGACCCAACAAATTATTGCCGC
Found at i:7794093 original size:13 final size:13
Alignment explanation
Indices: 7794077--7794101 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7794067 TTTAAAAATA
7794077 GTTTTTTAATTTT
1 GTTTTTTAATTTT
7794090 GTTTTTTAATTT
1 GTTTTTTAATTT
7794102 AAAAATTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (13 bp):
GTTTTTTAATTTT
Found at i:7794365 original size:19 final size:20
Alignment explanation
Indices: 7794331--7794375 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
7794321 GTCTCTCTCG
7794331 TCAAAA-ATTTTCAAAAA-T
1 TCAAAATATTTTCAAAAATT
7794349 TCAAAATATTTAT-AAAAATT
1 TCAAAATATTT-TCAAAAATT
7794369 TCAAAAT
1 TCAAAAT
7794376 TTATATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.25
19 9 0.38
20 9 0.38
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.36
Consensus pattern (20 bp):
TCAAAATATTTTCAAAAATT
Found at i:7794377 original size:18 final size:18
Alignment explanation
Indices: 7794331--7794380 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 18
7794321 GTCTCTCTCG
7794331 TCAAAAATTT-TCAAAAAT
1 TCAAAAATTTAT-AAAAAT
7794349 TCAAAATATTTATAAAAATT
1 TCAAAA-ATTTATAAAAA-T
7794369 TC-AAAATTTATA
1 TCAAAAATTTATA
7794381 TATATATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
18 13 0.45
19 12 0.41
20 4 0.14
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (18 bp):
TCAAAAATTTATAAAAAT
Found at i:7794382 original size:20 final size:19
Alignment explanation
Indices: 7794334--7794396 Score: 58
Period size: 20 Copynumber: 3.3 Consensus size: 19
7794324 TCTCTCGTCA
*
7794334 AAAATTTT-CAAAAA-TTC
1 AAAATTTTATAAAAATTTC
7794351 AAAATATTTATAAAAATTTC
1 AAAAT-TTTATAAAAATTTC
* * *
7794371 AAAATTTATATATATATTTA
1 AAAATTT-TATAAAAATTTC
7794391 AAAATT
1 AAAATT
7794397 CTAAAGAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
17 5 0.13
18 3 0.08
19 7 0.18
20 23 0.61
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (19 bp):
AAAATTTTATAAAAATTTC
Found at i:7813677 original size:3 final size:3
Alignment explanation
Indices: 7813671--7813767 Score: 115
Period size: 3 Copynumber: 31.7 Consensus size: 3
7813661 GTAAGTTATT
*
7813671 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATCT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
* * * *
7813717 ATT TTCA CTTA AT- CTA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA AT-A -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7813763 ATA AT
1 ATA AT
7813768 CTATTTTCAC
Statistics
Matches: 84, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
2 1 0.01
3 78 0.93
4 3 0.04
5 2 0.02
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:7813758 original size:53 final size:53
Alignment explanation
Indices: 7813678--7813786 Score: 218
Period size: 53 Copynumber: 2.1 Consensus size: 53
7813668 ATTATAATAA
7813678 TAATAATAATAATAATAATAATAATAATAATAATAATCTATTTTCACTTAATC
1 TAATAATAATAATAATAATAATAATAATAATAATAATCTATTTTCACTTAATC
7813731 TAATAATAATAATAATAATAATAATAATAATAATAATCTATTTTCACTTAATC
1 TAATAATAATAATAATAATAATAATAATAATAATAATCTATTTTCACTTAATC
7813784 TAA
1 TAA
7813787 ACAAGGAAAT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 56 1.00
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.39
Consensus pattern (53 bp):
TAATAATAATAATAATAATAATAATAATAATAATAATCTATTTTCACTTAATC
Found at i:7813798 original size:53 final size:53
Alignment explanation
Indices: 7813685--7813802 Score: 193
Period size: 53 Copynumber: 2.2 Consensus size: 53
7813675 TAATAATAAT
* *
7813685 AATAATAATAATAATAATAATAATAATAATCTATTTTCACTTAATCTAATAAT
1 AATAATAATAATAATAATAATAATAATAATCTATTTTCACTTAATCTAACAAG
7813738 AATAATAATAATAATAATAATAATAATAATCTATTTTCACTTAATCTAAACAAG
1 AATAATAATAATAATAATAATAATAATAATCTATTTTCACTTAATCT-AACAAG
*
7813792 GA-AATAATAAT
1 AATAATAATAAT
7813803 CTAAACAAGG
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
53 56 0.92
54 5 0.08
ACGTcount: A:0.54, C:0.08, G:0.02, T:0.36
Consensus pattern (53 bp):
AATAATAATAATAATAATAATAATAATAATCTATTTTCACTTAATCTAACAAG
Found at i:7813804 original size:20 final size:20
Alignment explanation
Indices: 7813779--7813818 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
7813769 TATTTTCACT
7813779 TAATCTAAACAAGGAAATAA
1 TAATCTAAACAAGGAAATAA
7813799 TAATCTAAACAAGGAAATAA
1 TAATCTAAACAAGGAAATAA
7813819 CAGTAAGTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.60, C:0.10, G:0.10, T:0.20
Consensus pattern (20 bp):
TAATCTAAACAAGGAAATAA
Found at i:7814370 original size:44 final size:44
Alignment explanation
Indices: 7814307--7814394 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
7814297 TTGAGCACCA
*
7814307 TGAGTACAGACAAGAATAGAAAAGCAACTAGTCCTTTTCCCTAC
1 TGAGTACAGACAAGAATAGAAAAGCAACTAGTCCTATTCCCTAC
7814351 TGAGTACAGACAAGAATAGAAAAGCAACTAGTCCTATTCCCTAC
1 TGAGTACAGACAAGAATAGAAAAGCAACTAGTCCTATTCCCTAC
7814395 ATGTATGATC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.40, C:0.23, G:0.16, T:0.22
Consensus pattern (44 bp):
TGAGTACAGACAAGAATAGAAAAGCAACTAGTCCTATTCCCTAC
Found at i:7818980 original size:29 final size:27
Alignment explanation
Indices: 7818940--7819005 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 27
7818930 TTTCTCTAAT
* *
7818940 TTTTTTATTTTC-TAACATATTTTTTGGA
1 TTTTTTATTTTCTTAA-A-AATTTTTGAA
7818968 TTTTTTATATTTCTTAAAAATTTTTGAA
1 TTTTTTAT-TTTCTTAAAAATTTTTGAA
7818996 TTTTTTATTT
1 TTTTTTATTT
7819006 CTAAATTATT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
27 2 0.06
28 24 0.71
29 5 0.15
30 3 0.09
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.67
Consensus pattern (27 bp):
TTTTTTATTTTCTTAAAAATTTTTGAA
Found at i:7825183 original size:21 final size:19
Alignment explanation
Indices: 7825149--7825192 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 19
7825139 AACATCAACA
7825149 TAAAATTTAAAAGAG-ACAT
1 TAAAATTTAAAAGAGTA-AT
7825168 TAAAATTTTCAAAAGAGTAAT
1 TAAAA-TTT-AAAAGAGTAAT
7825189 TAAA
1 TAAA
7825193 TGTGTTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 5 0.23
20 3 0.14
21 13 0.59
22 1 0.05
ACGTcount: A:0.57, C:0.05, G:0.09, T:0.30
Consensus pattern (19 bp):
TAAAATTTAAAAGAGTAAT
Found at i:7834896 original size:5 final size:5
Alignment explanation
Indices: 7834886--7834957 Score: 64
Period size: 5 Copynumber: 14.8 Consensus size: 5
7834876 TGTTAAAAAA
* *
7834886 ATATT ATATT ATAGTA ATGATT ATGTT -T-TT ATATT ATATT ATTATT
1 ATATT ATATT ATA-TT AT-ATT ATATT ATATT ATATT ATATT A-TATT
7834932 A-A-T ATATT ATATT ATATT ATA-T ATAT
1 ATATT ATATT ATATT ATATT ATATT ATAT
7834958 ACATAAAACA
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
3 4 0.07
4 8 0.14
5 32 0.57
6 11 0.20
7 1 0.02
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (5 bp):
ATATT
Found at i:7834939 original size:19 final size:19
Alignment explanation
Indices: 7834915--7834957 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
7834905 ATTATGTTTT
7834915 TATATTATATTATTATTA-A
1 TATATTATATTA-TATTATA
7834934 TATATTATATTATATTATA
1 TATATTATATTATATTATA
7834953 TATAT
1 TATAT
7834958 ACATAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TATATTATATTATATTATA
Found at i:7834990 original size:18 final size:19
Alignment explanation
Indices: 7834962--7835001 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
7834952 ATATATACAT
*
7834962 AAAACAAAAGAAAGAATAG
1 AAAACAAAAGAAAGAAAAG
7834981 AAAA-AAAAGAAAGAAAAG
1 AAAACAAAAGAAAGAAAAG
7834999 AAA
1 AAA
7835002 CAGAATAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.80, C:0.03, G:0.15, T:0.03
Consensus pattern (19 bp):
AAAACAAAAGAAAGAAAAG
Found at i:7835966 original size:44 final size:45
Alignment explanation
Indices: 7835871--7836004 Score: 162
Period size: 44 Copynumber: 3.0 Consensus size: 45
7835861 ACAGGACAGA
* *
7835871 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
7835917 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * *
7835961 ACAGGAATAATTCATGTAAGTCCATGTTAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
7836005 CAGGATATTG
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
44 37 0.49
45 1 0.01
46 37 0.49
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:7838625 original size:19 final size:19
Alignment explanation
Indices: 7838603--7838640 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
7838593 AAAATTGTAG
7838603 AAAAATA-TTAAAAAATAT
1 AAAAATATTTAAAAAATAT
*
7838621 AAAAATATTTAAAATATAT
1 AAAAATATTTAAAAAATAT
7838640 A
1 A
7838641 TAATTGTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
AAAAATATTTAAAAAATAT
Found at i:7838710 original size:10 final size:10
Alignment explanation
Indices: 7838697--7838757 Score: 61
Period size: 10 Copynumber: 6.0 Consensus size: 10
7838687 AAAATGTTTT
*
7838697 AAAATTATAAA
1 AAAATTAT-TA
7838708 AAAATTATTA
1 AAAATTATTA
*
7838718 AAAA-TAATA
1 AAAATTATTA
*
7838727 AAATATTATTT
1 AAA-ATTATTA
*
7838738 AAAATTTTTA
1 AAAATTATTA
7838748 AAAATTATTA
1 AAAATTATTA
7838758 GAATCGTAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
9 7 0.17
10 20 0.49
11 14 0.34
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (10 bp):
AAAATTATTA
Found at i:7839044 original size:19 final size:21
Alignment explanation
Indices: 7839017--7839072 Score: 62
Period size: 22 Copynumber: 2.7 Consensus size: 21
7839007 AATTCAAAAA
* *
7839017 TTTTAAATAATTTTTA-TA-G
1 TTTTTAATAATTTTTACAATG
*
7839036 TTTTTAATAATTATTTACAATT
1 TTTTTAATAATT-TTTACAATG
7839058 TTTTTAATAATTTTT
1 TTTTTAATAATTTTT
7839073 TCTATTTTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
19 11 0.35
20 4 0.13
21 4 0.13
22 12 0.39
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (21 bp):
TTTTTAATAATTTTTACAATG
Found at i:7839058 original size:39 final size:38
Alignment explanation
Indices: 7839015--7839160 Score: 105
Period size: 38 Copynumber: 4.0 Consensus size: 38
7839005 ACAATTCAAA
*
7839015 AATTTTAAATAATTTTTATAGTTTTTAATAATTATTTAC
1 AATTTTAAATAATTTTTATAATTTTTAATAATT-TTTAC
* **
7839054 AA--TT---T--TTTTAATAATTTTTTCT-A-TTTTAC
1 AATTTTAAATAATTTTTATAATTTTTAATAATTTTTAC
* *
7839083 AAATTTTAAATATTATTTTATAA-TTTTAATAACTTTTAC
1 -AATTTTAAATAAT-TTTTATAATTTTTAATAATTTTTAC
* *
7839122 AATTTTAAATTATTTTTAATAATATTTAATAATTATTTA
1 AATTTTAAATAATTTTT-ATAATTTTTAATAATT-TTTA
7839161 AAAAAATTAC
Statistics
Matches: 82, Mismatches: 11, Indels: 27
0.68 0.09 0.22
Matches are distributed among these distances:
29 5 0.06
30 3 0.04
31 1 0.01
32 15 0.18
34 1 0.01
35 1 0.01
37 12 0.15
38 23 0.28
39 17 0.21
40 4 0.05
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (38 bp):
AATTTTAAATAATTTTTATAATTTTTAATAATTTTTAC
Found at i:7839071 original size:10 final size:10
Alignment explanation
Indices: 7839015--7839161 Score: 76
Period size: 10 Copynumber: 14.9 Consensus size: 10
7839005 ACAATTCAAA
*
7839015 AATTTTAAAT
1 AATTTTTAAT
7839025 AATTTTT-AT
1 AATTTTTAAT
*
7839034 AGTTTTTAAT
1 AATTTTTAAT
7839044 AATTATTTACA-
1 AATT-TTTA-AT
*
7839055 ATTTTTTTAAT
1 A-ATTTTTAAT
**
7839066 AATTTTTTCT
1 AATTTTTAAT
7839076 -A-TTTTACA-
1 AATTTTTA-AT
*
7839084 AATTTTAAAT
1 AATTTTTAAT
*
7839094 -ATTATTTTAT
1 AATT-TTTAAT
7839104 AA-TTTTAAT
1 AATTTTTAAT
* *
7839113 AACTTTT-AC
1 AATTTTTAAT
*
7839122 AATTTTAAAT
1 AATTTTTAAT
*
7839132 TATTTTTAAT
1 AATTTTTAAT
*
7839142 AATATTTAAT
1 AATTTTTAAT
7839152 AATTATTTAA
1 AATT-TTTAA
7839162 AAAAATTACT
Statistics
Matches: 101, Mismatches: 22, Indels: 27
0.67 0.15 0.18
Matches are distributed among these distances:
8 4 0.04
9 27 0.27
10 51 0.50
11 16 0.16
12 3 0.03
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (10 bp):
AATTTTTAAT
Found at i:7839080 original size:19 final size:19
Alignment explanation
Indices: 7839016--7839080 Score: 51
Period size: 19 Copynumber: 3.3 Consensus size: 19
7839006 CAATTCAAAA
* *
7839016 ATTTTAAATAA-TTTTTAT
1 ATTTTTAATAATTTTTTCT
*
7839034 AGTTTTTAATAATTATTTACAAT
1 A-TTTTTAATAATT-TTTTC--T
*
7839057 TTTTTTAATAATTTTTTCT
1 ATTTTTAATAATTTTTTCT
7839076 ATTTT
1 ATTTT
7839081 ACAAATTTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 9
0.71 0.12 0.18
Matches are distributed among these distances:
18 1 0.03
19 14 0.39
20 1 0.03
21 7 0.19
22 12 0.33
23 1 0.03
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (19 bp):
ATTTTTAATAATTTTTTCT
Found at i:7842007 original size:6 final size:6
Alignment explanation
Indices: 7841996--7842025 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
7841986 TGGGAAATAT
7841996 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
7842026 CGAGCAATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:7844578 original size:23 final size:22
Alignment explanation
Indices: 7844543--7844585 Score: 77
Period size: 23 Copynumber: 1.9 Consensus size: 22
7844533 GTCAGCATTT
7844543 AATTAATTTTTTAAAATTTTAA
1 AATTAATTTTTTAAAATTTTAA
7844565 AATTATATTTTTTAAAATTTT
1 AATTA-ATTTTTTAAAATTTT
7844586 TAATTTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
AATTAATTTTTTAAAATTTTAA
Found at i:7844590 original size:22 final size:21
Alignment explanation
Indices: 7844540--7844590 Score: 75
Period size: 23 Copynumber: 2.3 Consensus size: 21
7844530 CATGTCAGCA
7844540 TTTAATTAATTTTTTAAAATT
1 TTTAATTAATTTTTTAAAATT
*
7844561 TTAAAATTATATTTTTTAAAATT
1 TT-TAATTA-ATTTTTTAAAATT
7844584 TTTAATT
1 TTTAATT
7844591 TTAAAAACCA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 2 0.08
22 9 0.35
23 15 0.58
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTAATTAATTTTTTAAAATT
Found at i:7844592 original size:15 final size:17
Alignment explanation
Indices: 7844557--7844596 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 17
7844547 AATTTTTTAA
7844557 AATTTTAAAATTATATT
1 AATTTTAAAATTATATT
7844574 --TTTTAAAATT-T-TT
1 AATTTTAAAATTATATT
7844587 AATTTTAAAA
1 AATTTTAAAA
7844597 ACCAGCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
13 2 0.10
14 1 0.05
15 18 0.86
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
AATTTTAAAATTATATT
Found at i:7849136 original size:21 final size:21
Alignment explanation
Indices: 7849113--7849152 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7849103 TTAATTATTA
*
7849113 AAAAATTT-AAATATATAAAG
1 AAAAATTTAAAAAATATAAAG
7849133 AAAAATTTAAAAAATATAAA
1 AAAAATTTAAAAAATATAAA
7849153 ACTTTCCCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.28
Consensus pattern (21 bp):
AAAAATTTAAAAAATATAAAG
Found at i:7862964 original size:14 final size:12
Alignment explanation
Indices: 7862952--7862997 Score: 56
Period size: 12 Copynumber: 3.6 Consensus size: 12
7862942 CACGTATATG
7862952 TATATAAAAATA
1 TATATAAAAATA
7862964 TATATAAAAATTA
1 TATATAAAAA-TA
*
7862977 TAAAATATAAAATA
1 T-ATATA-AAAATA
7862991 TATATAA
1 TATATAA
7862998 GTATGTATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
12 11 0.38
13 7 0.24
14 7 0.24
15 4 0.14
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
TATATAAAAATA
Found at i:7863011 original size:27 final size:26
Alignment explanation
Indices: 7862952--7863014 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 26
7862942 CACGTATATG
7862952 TATATA-AAAATATATATAAAAATTA
1 TATATATAAAATATATATAAAAATTA
* **
7862977 TAAAATATAAAATATATATAAGTATGTA
1 T-ATATATAAAATATATATAAAAAT-TA
7863005 TATATATAAA
1 TATATATAAA
7863015 TGAGGAAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
25 1 0.03
26 4 0.13
27 23 0.74
28 3 0.10
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (26 bp):
TATATATAAAATATATATAAAAATTA
Found at i:7870735 original size:25 final size:25
Alignment explanation
Indices: 7870682--7870735 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
7870672 CAGTCCGTTT
* * *
7870682 TTAATTAAAATTAAAATTAGTTTTT
1 TTAATTAAAATTAAAACTAATTTTA
7870707 TTAA-TAAAATTAAAACTAATTGTTA
1 TTAATTAAAATTAAAACTAATT-TTA
7870732 TTAA
1 TTAA
7870736 AATTAATTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 15 0.60
25 10 0.40
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (25 bp):
TTAATTAAAATTAAAACTAATTTTA
Found at i:7870754 original size:16 final size:16
Alignment explanation
Indices: 7870717--7870756 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
7870707 TTAATAAAAT
* *
7870717 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
7870733 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
7870749 TAAAATTA
1 TAAAATTA
7870757 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:7870824 original size:66 final size:59
Alignment explanation
Indices: 7870759--7870878 Score: 197
Period size: 59 Copynumber: 2.1 Consensus size: 59
7870749 TAAAATTATC
* *
7870759 AAATTAT-TAATTGTTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTA
1 AAATTATCAAATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTA
* *
7870817 CATTTATCAAATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTA
1 AAATTATCAAATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTA
7870876 AAA
1 AAA
7870879 CAAACTTGAT
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 5 0.09
59 50 0.91
ACGTcount: A:0.41, C:0.05, G:0.09, T:0.45
Consensus pattern (59 bp):
AAATTATCAAATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTA
Found at i:7870984 original size:22 final size:24
Alignment explanation
Indices: 7870944--7870987 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
7870934 AAATAAAATT
7870944 AAAATAAAAAACTATTATATTTTA
1 AAAATAAAAAACTATTATATTTTA
7870968 AAAATAAAAAA-TA-TATATTT
1 AAAATAAAAAACTATTATATTT
7870988 AATATTTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.35
23 2 0.10
24 11 0.55
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (24 bp):
AAAATAAAAAACTATTATATTTTA
Found at i:7874759 original size:16 final size:16
Alignment explanation
Indices: 7874738--7874768 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7874728 CAATTAGTGC
7874738 AAATCACATAGACGTA
1 AAATCACATAGACGTA
7874754 AAATCACATAGACGT
1 AAATCACATAGACGT
7874769 TGTTTCGGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.48, C:0.19, G:0.13, T:0.19
Consensus pattern (16 bp):
AAATCACATAGACGTA
Found at i:7879002 original size:42 final size:42
Alignment explanation
Indices: 7878943--7879026 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
7878933 GAATAATAGT
7878943 ATGGTAGTGTCTCTTTTCATCTACCATTGGATAAATTAAGTA
1 ATGGTAGTGTCTCTTTTCATCTACCATTGGATAAATTAAGTA
7878985 ATGGTAGTGTCTCTTTTCATCTACCATTGGATAAATTAAGTA
1 ATGGTAGTGTCTCTTTTCATCTACCATTGGATAAATTAAGTA
7879027 GACTAGGAAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (42 bp):
ATGGTAGTGTCTCTTTTCATCTACCATTGGATAAATTAAGTA
Found at i:7894909 original size:5 final size:6
Alignment explanation
Indices: 7894888--7894925 Score: 58
Period size: 6 Copynumber: 6.0 Consensus size: 6
7894878 ATAATCTCTA
7894888 TTTTCT ATTTTCT TTTTCT TTTTCT TTTTCT ATTTTCT
1 TTTTCT -TTTTCT TTTTCT TTTTCT TTTTCT -TTTTCT
7894926 GAAAATTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 18 0.60
7 12 0.40
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTCT
Found at i:7895539 original size:22 final size:21
Alignment explanation
Indices: 7895512--7895558 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
7895502 CCGGCCCGAT
*
7895512 TTTTAATAAACACAAAAAAATA
1 TTTTAA-AAACAAAAAAAAATA
* *
7895534 TTTTAAAAATAAAAAAAAATG
1 TTTTAAAAACAAAAAAAAATA
7895555 TTTT
1 TTTT
7895559 TAAAGTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (21 bp):
TTTTAAAAACAAAAAAAAATA
Found at i:7895559 original size:22 final size:21
Alignment explanation
Indices: 7895511--7895562 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
7895501 CCCGGCCCGA
*
7895511 TTTTTAATAAACACAAAAAAAT
1 TTTTTAA-AAACAAAAAAAAAT
* *
7895533 ATTTTAAAAATAAAAAAAAAT
1 TTTTTAAAAACAAAAAAAAAT
7895554 GTTTTTAAA
1 -TTTTTAAA
7895563 GTATTTTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 12 0.48
22 13 0.52
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35
Consensus pattern (21 bp):
TTTTTAAAAACAAAAAAAAAT
Found at i:7895582 original size:7 final size:7
Alignment explanation
Indices: 7895570--7895594 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7895560 AAAGTATTTT
7895570 AAAAATA
1 AAAAATA
7895577 AAAAATA
1 AAAAATA
7895584 AAAAATA
1 AAAAATA
7895591 AAAA
1 AAAA
7895595 TATATATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:7897097 original size:84 final size:86
Alignment explanation
Indices: 7896991--7897150 Score: 270
Period size: 85 Copynumber: 1.9 Consensus size: 86
7896981 TAATTAAGTT
*
7896991 CTTTTTTTTTACACTCAGTTGGGTA-TTAAACTTTCAAAATACACCAAAAAAGCCTTCAAACTTT
1 CTTTTTTTTTACACTCAGTTGGGTACTTAAACTTTCAAAATACACCAAAAAAGCCCTCAAACTTT
7897055 TT-AAAAAAAAGCCATTAAGC
66 TTCAAAAAAAAGCCATTAAGC
* * *
7897075 CTTTTTTTTTACACTCATTTGGGTACTTAAACTTTCAAAATACATCAAAAAGGCCCTCAAACTTT
1 CTTTTTTTTTACACTCAGTTGGGTACTTAAACTTTCAAAATACACCAAAAAAGCCCTCAAACTTT
7897140 TTCAAAAAAAA
66 TTCAAAAAAAA
7897151 ATTAAGCCCC
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
84 24 0.34
85 38 0.54
86 8 0.11
ACGTcount: A:0.39, C:0.19, G:0.07, T:0.34
Consensus pattern (86 bp):
CTTTTTTTTTACACTCAGTTGGGTACTTAAACTTTCAAAATACACCAAAAAAGCCCTCAAACTTT
TTCAAAAAAAAGCCATTAAGC
Found at i:7897168 original size:84 final size:84
Alignment explanation
Indices: 7896995--7897216 Score: 254
Period size: 85 Copynumber: 2.6 Consensus size: 84
7896985 TAAGTTCTTT
* * * *
7896995 TTTTTTACACTCAGTTGGGTA-TTAAACTTTCAAAATACACCAAAAAAGCCTTCAAACTTTTTAA
1 TTTTTTACACTCAATTGGGTACTTAAACTTTCAAAATACATCAAAAAGGCCCTCAAACTTTTTAA
**
7897059 AAAAAAGCCATTAAG-CCTTT
66 AAAAAA--CATTAAGCCCTGC
*
7897079 TTTTTTACACTCATTTGGGTACTTAAACTTTCAAAATACATCAAAAAGGCCCTCAAACTTTTTCA
1 TTTTTTACACTCAATTGGGTACTTAAACTTTCAAAATACATCAAAAAGGCCCTCAAACTTTTT-A
7897144 AAAAAAA-ATTAAGCCCCTGC
65 AAAAAAACATTAAG-CCCTGC
** * * * *
7897164 TTTTTTTTACTCAATTGGGTACTTGAA-TTGTCAAAATGCATTAAAAAGACCCT
1 TTTTTTACACTCAATTGGGTACTTAAACTT-TCAAAATACATCAAAAAGGCCCT
7897217 TTGACCGTTA
Statistics
Matches: 120, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
83 6 0.05
84 22 0.18
85 84 0.70
86 8 0.07
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.34
Consensus pattern (84 bp):
TTTTTTACACTCAATTGGGTACTTAAACTTTCAAAATACATCAAAAAGGCCCTCAAACTTTTTAA
AAAAAACATTAAGCCCTGC
Found at i:7897326 original size:12 final size:12
Alignment explanation
Indices: 7897309--7897336 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
7897299 GACATGTGAC
7897309 AAAAAAATTAAT
1 AAAAAAATTAAT
7897321 AAAAAAATTAAT
1 AAAAAAATTAAT
7897333 AAAA
1 AAAA
7897337 TTATAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
AAAAAAATTAAT
Found at i:7897338 original size:21 final size:20
Alignment explanation
Indices: 7897312--7897392 Score: 66
Period size: 18 Copynumber: 4.2 Consensus size: 20
7897302 ATGTGACAAA
7897312 AAAATTAATAAAAAAATTAAT
1 AAAATTAAT-AAAAAATTAAT
*
7897333 AAAATT-AT-AAAAATTATT
1 AAAATTAATAAAAAATTAAT
*
7897351 AAATTTTAATAAAAAA-TAA-
1 AAA-ATTAATAAAAAATTAAT
*
7897370 AAAA-TAAGAAAAAAATT-AT
1 AAAATTAA-TAAAAAATTAAT
7897389 AAAA
1 AAAA
7897393 ATCGTAAAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
17 3 0.06
18 19 0.39
19 10 0.20
20 6 0.12
21 11 0.22
ACGTcount: A:0.70, C:0.00, G:0.01, T:0.28
Consensus pattern (20 bp):
AAAATTAATAAAAAATTAAT
Found at i:7897447 original size:19 final size:19
Alignment explanation
Indices: 7897425--7897463 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7897415 TTGTGAATTT
7897425 TTATACAAAT-AATAAAAAA
1 TTATA-AAATGAATAAAAAA
*
7897444 TTATAAAATGCATAAAAAA
1 TTATAAAATGAATAAAAAA
7897463 T
1 T
7897464 AACCTTTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.64, C:0.05, G:0.03, T:0.28
Consensus pattern (19 bp):
TTATAAAATGAATAAAAAA
Done.