Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 26 of 144
Found at i:7903700 original size:35 final size:35
Alignment explanation
Indices: 7903660--7903726 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
7903650 TTTGTGTTTG
*
7903660 ATCTTTTCAATTTCTTCTTTATTTTACTTTTCTTA
1 ATCTTTTCAATTTCTTCTTTATTTTACCTTTCTTA
*
7903695 ATCTTTTCAATTTTTTCTTTATTTTACCTTTC
1 ATCTTTTCAATTTCTTCTTTATTTTACCTTTC
7903727 ATTACTTACA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.16, C:0.18, G:0.00, T:0.66
Consensus pattern (35 bp):
ATCTTTTCAATTTCTTCTTTATTTTACCTTTCTTA
Found at i:7912332 original size:39 final size:39
Alignment explanation
Indices: 7912278--7912357 Score: 115
Period size: 39 Copynumber: 2.1 Consensus size: 39
7912268 CTTCCGGCCA
* *
7912278 CCACCATCGTCGTTCATCAGTCAGGCAGTCACCACCGGT
1 CCACCATCATCGTTCACCAGTCAGGCAGTCACCACCGGT
* * *
7912317 CCACCATCATTGTTCACCAGTCAGGTAGTCACCATCGGT
1 CCACCATCATCGTTCACCAGTCAGGCAGTCACCACCGGT
7912356 CC
1 CC
7912358 TCCCGTCAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.23
Consensus pattern (39 bp):
CCACCATCATCGTTCACCAGTCAGGCAGTCACCACCGGT
Found at i:7913913 original size:17 final size:17
Alignment explanation
Indices: 7913887--7913920 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7913877 TTTTTAGGAG
7913887 AAATAAAAAAGATTTGA
1 AAATAAAAAAGATTTGA
*
7913904 AAATATAAAAGATTTGA
1 AAATAAAAAAGATTTGA
7913921 TTGTTTATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.12, T:0.26
Consensus pattern (17 bp):
AAATAAAAAAGATTTGA
Found at i:7920576 original size:57 final size:57
Alignment explanation
Indices: 7920504--7920733 Score: 460
Period size: 57 Copynumber: 4.0 Consensus size: 57
7920494 TATATGGTGA
7920504 TGTCTAATTTCTATAATAACATTTTGTTATGATATTGATTTTATTTTTACTTTATTT
1 TGTCTAATTTCTATAATAACATTTTGTTATGATATTGATTTTATTTTTACTTTATTT
7920561 TGTCTAATTTCTATAATAACATTTTGTTATGATATTGATTTTATTTTTACTTTATTT
1 TGTCTAATTTCTATAATAACATTTTGTTATGATATTGATTTTATTTTTACTTTATTT
7920618 TGTCTAATTTCTATAATAACATTTTGTTATGATATTGATTTTATTTTTACTTTATTT
1 TGTCTAATTTCTATAATAACATTTTGTTATGATATTGATTTTATTTTTACTTTATTT
7920675 TGTCTAATTTCTATAATAACATTTTGTTATGATATTGATTTTATTTTTACTTTATTT
1 TGTCTAATTTCTATAATAACATTTTGTTATGATATTGATTTTATTTTTACTTTATTT
7920732 TG
1 TG
7920734 ATAAATATGT
Statistics
Matches: 173, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 173 1.00
ACGTcount: A:0.26, C:0.07, G:0.07, T:0.60
Consensus pattern (57 bp):
TGTCTAATTTCTATAATAACATTTTGTTATGATATTGATTTTATTTTTACTTTATTT
Found at i:7920749 original size:38 final size:38
Alignment explanation
Indices: 7920707--7920783 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
7920697 TTTGTTATGA
7920707 TATTGATTTTATTTTTACTTTATTTTGATAAATATGTT
1 TATTGATTTTATTTTTACTTTATTTTGATAAATATGTT
*
7920745 TATTGATTTTATTTTTACTTTATTTTGATATATATGTT
1 TATTGATTTTATTTTTACTTTATTTTGATAAATATGTT
7920783 T
1 T
7920784 TCTTTTTTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.25, C:0.03, G:0.08, T:0.65
Consensus pattern (38 bp):
TATTGATTTTATTTTTACTTTATTTTGATAAATATGTT
Found at i:7922620 original size:27 final size:26
Alignment explanation
Indices: 7922582--7922677 Score: 95
Period size: 27 Copynumber: 3.6 Consensus size: 26
7922572 ATGTCACCTA
*
7922582 TCAGATATGCACCACCAGTGCGGCCTT
1 TCAGATAGGCACCACCAGTGC-GCCTT
7922609 TCAGATAGGCACCACCAGTGC-CGCTT
1 TCAGATAGGCACCACCAGTGCGC-CTT
*** * *
7922635 ATCAGATAGGGTTCACTAGTGTCGCCTA
1 -TCAGATAGGCACCACCAGTG-CGCCTT
7922663 TCAGATAGGCACCAC
1 TCAGATAGGCACCAC
7922678 ACCCCTATAC
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
25 1 0.02
26 3 0.05
27 48 0.86
28 3 0.05
29 1 0.02
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (26 bp):
TCAGATAGGCACCACCAGTGCGCCTT
Found at i:7924404 original size:18 final size:18
Alignment explanation
Indices: 7924377--7924469 Score: 150
Period size: 18 Copynumber: 5.2 Consensus size: 18
7924367 TACGACCGTT
7924377 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
7924395 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
7924413 TACAGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
7924431 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
7924449 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
7924467 TAC
1 TAC
7924470 AGTAGTTGGG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 68 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:7930991 original size:25 final size:28
Alignment explanation
Indices: 7930963--7931014 Score: 74
Period size: 25 Copynumber: 1.9 Consensus size: 28
7930953 AAAATTATAT
7930963 TTTAATC-TT-AAAATTA-AAAAAATAA
1 TTTAATCTTTAAAAATTATAAAAAATAA
7930988 TTTAATCTTTTAAAAATTATAAAAAAT
1 TTTAATC-TTTAAAAATTATAAAAAAT
7931015 TACTAAATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 7 0.30
27 2 0.09
28 7 0.30
29 7 0.30
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (28 bp):
TTTAATCTTTAAAAATTATAAAAAATAA
Found at i:7931347 original size:12 final size:10
Alignment explanation
Indices: 7931322--7931346 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7931312 AATTTCCCTC
7931322 TTTTTATATA
1 TTTTTATATA
7931332 TTTTTATATA
1 TTTTTATATA
7931342 TTTTT
1 TTTTT
7931347 TAATTTACAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTTATATA
Found at i:7935235 original size:26 final size:26
Alignment explanation
Indices: 7935185--7935247 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 26
7935175 TAATTGCTTA
7935185 ATAAATTATAAATTAATCGTATATAT-C
1 ATAAATT-TAAATTAATC-TATATATCC
7935212 ATAAATTTAAATTAAAT-TATTATATCC
1 ATAAATTTAAATT-AATCTA-TATATCC
7935239 ATCAAATTT
1 AT-AAATTT
7935248 TTTGATTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
25 2 0.06
26 11 0.34
27 13 0.41
28 6 0.19
ACGTcount: A:0.48, C:0.08, G:0.02, T:0.43
Consensus pattern (26 bp):
ATAAATTTAAATTAATCTATATATCC
Found at i:7936109 original size:12 final size:12
Alignment explanation
Indices: 7936088--7936144 Score: 55
Period size: 12 Copynumber: 4.7 Consensus size: 12
7936078 ACTAACTATT
7936088 ATAATATAAATTA
1 ATAAT-TAAATTA
*
7936101 ATCATTAAATTA
1 ATAATTAAATTA
*
7936113 AAAATT-AA-TA
1 ATAATTAAATTA
7936123 ATCAACTTAAATTA
1 AT-AA-TTAAATTA
7936137 ATAATTAA
1 ATAATTAA
7936145 CCGAAACAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
10 3 0.08
11 4 0.11
12 17 0.47
13 8 0.22
14 4 0.11
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (12 bp):
ATAATTAAATTA
Found at i:7936132 original size:19 final size:17
Alignment explanation
Indices: 7936094--7936141 Score: 51
Period size: 19 Copynumber: 2.7 Consensus size: 17
7936084 TATTATAATA
* *
7936094 TAAATTAATCATTAAAT
1 TAAATTAATAATCAAAT
*
7936111 TAAAAATTAATAATCAACT
1 T--AAATTAATAATCAAAT
7936130 TAAATTAATAAT
1 TAAATTAATAAT
7936142 TAACCGAAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 12 0.46
19 14 0.54
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (17 bp):
TAAATTAATAATCAAAT
Found at i:7938431 original size:24 final size:24
Alignment explanation
Indices: 7938387--7938441 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
7938377 CAAATATTTG
*
7938387 TAAAAT-AATATTAAAATTAACAA
1 TAAAATAAATATTAAAAGTAACAA
* *
7938410 TAAAATAAATGTTAATAGTAACAA
1 TAAAATAAATATTAAAAGTAACAA
*
7938434 TATAATAA
1 TAAAATAA
7938442 TAAAATAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.31
Consensus pattern (24 bp):
TAAAATAAATATTAAAAGTAACAA
Found at i:7943506 original size:39 final size:39
Alignment explanation
Indices: 7943426--7943598 Score: 152
Period size: 45 Copynumber: 4.2 Consensus size: 39
7943416 ATTTGCCGGC
* * *
7943426 TTACTGA-TCAGGCAC-TTATGTGCCGACTACTGTTACTG
1 TTACTGATTC-GGCACTTTGTGTGTCGAATACTGTTACTG
7943464 TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTG
1 TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTG
* *
7943503 TTACTGTTACCGACTCGGCACTTTGTGTGTCGAATACTGTTACCG
1 TTAC---T---GATTCGGCACTTTGTGTGTCGAATACTGTTACTG
* *
7943548 TTACTGTTACAGGTTCAGCACTTTGTGTGTTGAATACTGTTACTG
1 TTACTG----A--TTCGGCACTTTGTGTGTCGAATACTGTTACTG
7943593 TTACTG
1 TTACTG
7943599 TTATTGCTAC
Statistics
Matches: 112, Mismatches: 9, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
38 12 0.11
39 27 0.24
42 2 0.02
43 1 0.01
45 70 0.62
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (39 bp):
TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTG
Found at i:7943521 original size:45 final size:45
Alignment explanation
Indices: 7943453--7943601 Score: 235
Period size: 45 Copynumber: 3.3 Consensus size: 45
7943443 ATGTGCCGAC
*
7943453 TACTGTTACTGTTACTGATTCGGCACTTTGTGTGTCGAATACTGT
1 TACTGTTACTGTTACAGATTCGGCACTTTGTGTGTCGAATACTGT
* *
7943498 TACTGTTACTGTTACCGACTCGGCACTTTGTGTGTCGAATACTGT
1 TACTGTTACTGTTACAGATTCGGCACTTTGTGTGTCGAATACTGT
* * * *
7943543 TACCGTTACTGTTACAGGTTCAGCACTTTGTGTGTTGAATACTGT
1 TACTGTTACTGTTACAGATTCGGCACTTTGTGTGTCGAATACTGT
7943588 TACTGTTACTGTTA
1 TACTGTTACTGTTA
7943602 TTGCTACCGT
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 95 1.00
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.41
Consensus pattern (45 bp):
TACTGTTACTGTTACAGATTCGGCACTTTGTGTGTCGAATACTGT
Found at i:7943593 original size:6 final size:6
Alignment explanation
Indices: 7943582--7943630 Score: 53
Period size: 6 Copynumber: 7.8 Consensus size: 6
7943572 GTGTGTTGAA
* * *
7943582 TACTGT TACTGT TACTGT TATTGC TACCGT TACTGAT TACTGT TCACTG
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTG-T TACTGT T-ACTG
7943631 GTGTGTTTGG
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
6 25 0.71
7 10 0.29
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.45
Consensus pattern (6 bp):
TACTGT
Found at i:7965151 original size:17 final size:17
Alignment explanation
Indices: 7965120--7965242 Score: 61
Period size: 19 Copynumber: 6.8 Consensus size: 17
7965110 CATCAAAAGT
*
7965120 TATTAAAATTAATTAAAA
1 TATTAAAAAT-ATTAAAA
7965138 -ATTAGAAAATATTAAAA
1 TATTA-AAAATATTAAAA
*
7965155 TATTAAAAATTATATAAAT
1 TATTAAAAA-TAT-TAAAA
* * *
7965174 TA-TGAACATAATAAAA
1 TATTAAAAATATTAAAA
* * **
7965190 AATTATAAATTAAGAAAAA
1 TATTA-AAAAT-ATTAAAA
*
7965209 TATTTAAAAATATAAAATA
1 TA-TTAAAAATATTAAA-A
7965228 TTATTAAAAATATTA
1 -TATTAAAAATATTA
7965243 TAAAAATATA
Statistics
Matches: 79, Mismatches: 16, Indels: 19
0.69 0.14 0.17
Matches are distributed among these distances:
16 5 0.06
17 18 0.23
18 23 0.29
19 28 0.35
20 5 0.06
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.35
Consensus pattern (17 bp):
TATTAAAAATATTAAAA
Found at i:7965160 original size:35 final size:33
Alignment explanation
Indices: 7965120--7965230 Score: 91
Period size: 35 Copynumber: 3.2 Consensus size: 33
7965110 CATCAAAAGT
7965120 TATTAAAATTAATTAAAAATTAGAAAATATTAAAA
1 TATTAAAATTAA-TAAAAATTAGAAAATA-TAAAA
* *
7965155 TATTAAAAATT-ATATAAATTATGAACATAATAAAA
1 TATT-AAAATTAATAAAAATTA-GAAAAT-ATAAAA
* *
7965190 AATTATAAATTAAGAAAAATATTTA-AAAATATAAAA
1 TATTA-AAATTAA-TAAAA-A-TTAGAAAATATAAAA
7965226 TATTA
1 TATTA
7965231 TTAAAAATAT
Statistics
Matches: 61, Mismatches: 7, Indels: 15
0.73 0.08 0.18
Matches are distributed among these distances:
34 9 0.15
35 23 0.38
36 18 0.30
37 7 0.11
38 1 0.02
39 3 0.05
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (33 bp):
TATTAAAATTAATAAAAATTAGAAAATATAAAA
Found at i:7965163 original size:9 final size:9
Alignment explanation
Indices: 7965120--7965349 Score: 59
Period size: 9 Copynumber: 24.6 Consensus size: 9
7965110 CATCAAAAGT
*
7965120 TATTAAAAT
1 TATTAAAAA
7965129 TAATT-AAAA
1 T-ATTAAAAA
7965138 -ATTAGAAAA
1 TATTA-AAAA
7965147 TATT-AAAA
1 TATTAAAAA
7965155 TATTAAAAA
1 TATTAAAAA
*
7965164 T-TATATAAA
1 TAT-TAAAAA
* *
7965173 T-TATGAACA
1 TAT-TAAAAA
*
7965182 TAATAAAAA
1 TATTAAAAA
*
7965191 -ATTATAAAT
1 TATTA-AAAA
**
7965200 TAAGAAAAA
1 TATTAAAAA
7965209 TATTTAAAAA
1 TA-TTAAAAA
7965219 TA-TAAAATA
1 TATTAAAA-A
7965228 TTATTAAAAA
1 -TATTAAAAA
7965238 TATTATAAAA
1 TATTA-AAAA
*
7965248 -ATATAGAAA
1 TAT-TAAAAA
* *
7965257 TGTGCAAAAA
1 TAT-TAAAAA
7965267 -ATTATAAAA
1 TATTA-AAAA
* *
7965276 -ATGGAAAAT
1 TAT-TAAAAA
**
7965285 TACAAAAATA
1 TATTAAAA-A
7965295 TTATTACAAAA
1 -TATTA-AAAA
7965306 TATTCAAAAA
1 TATT-AAAAA
*
7965316 TAATATAAAA
1 TATTA-AAAA
7965326 T-TTAAAAAAA
1 TATT--AAAAA
7965336 TATTAAAAA
1 TATTAAAAA
7965345 TATTA
1 TATTA
7965350 CAATTTTACA
Statistics
Matches: 163, Mismatches: 31, Indels: 54
0.66 0.12 0.22
Matches are distributed among these distances:
7 3 0.02
8 18 0.11
9 74 0.45
10 52 0.32
11 13 0.08
12 3 0.02
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.32
Consensus pattern (9 bp):
TATTAAAAA
Found at i:7965239 original size:12 final size:11
Alignment explanation
Indices: 7965204--7965251 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
7965194 ATAAATTAAG
7965204 AAAAATATT-T
1 AAAAATATTAT
7965214 -AAAA-A-TAT
1 AAAAATATTAT
7965222 -AAAATATTATT
1 AAAAATATTA-T
7965233 AAAAATATTAT
1 AAAAATATTAT
7965244 AAAAATAT
1 AAAAATAT
7965252 AGAAATGTGC
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
7 1 0.03
8 6 0.18
9 5 0.15
10 2 0.06
11 10 0.30
12 9 0.27
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
AAAAATATTAT
Found at i:7965695 original size:16 final size:16
Alignment explanation
Indices: 7965676--7965713 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
7965666 TTTTCATTTT
7965676 TTTGTAATTTATAAAA
1 TTTGTAATTTATAAAA
* *
7965692 TTTGTAATTTTTAATA
1 TTTGTAATTTATAAAA
7965708 TTTGTA
1 TTTGTA
7965714 CAAAATTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (16 bp):
TTTGTAATTTATAAAA
Found at i:7972088 original size:15 final size:15
Alignment explanation
Indices: 7972068--7972097 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7972058 TTTTTTCTAC
*
7972068 TTCTTTTTATTTTAT
1 TTCTTTTAATTTTAT
7972083 TTCTTTTAATTTTAT
1 TTCTTTTAATTTTAT
7972098 GCTTTAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.77
Consensus pattern (15 bp):
TTCTTTTAATTTTAT
Found at i:7977596 original size:13 final size:13
Alignment explanation
Indices: 7977580--7977609 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
7977570 ATTGTCATGT
7977580 AATTGTTTTTCTG
1 AATTGTTTTTCTG
7977593 AATTGTTTTTCTG
1 AATTGTTTTTCTG
7977606 AATT
1 AATT
7977610 TAGCTGATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.20, C:0.07, G:0.13, T:0.60
Consensus pattern (13 bp):
AATTGTTTTTCTG
Found at i:7978577 original size:82 final size:81
Alignment explanation
Indices: 7978486--7978735 Score: 187
Period size: 78 Copynumber: 3.1 Consensus size: 81
7978476 CATATAAGAA
7978486 TATTAATTATTAAGAATTTTATTAAATTATATATTTTAAGTATAATATATTTAATAATAATTATG
1 TATTAATTATTAAGAATTTTATTAAATTATATATTTTAA-TATAATATATTTAATAATAATTATG
7978551 TTTAAATATGATTAAAT
65 TTTAAATATGATTAAAT
* * * * * * * * **
7978568 TATTTATTATT---CATATTAATAATCTTATCAAAATTTAA-ATAACA-ATAACAATAATAATT-
1 TATTAATTATTAAGAATTTTATTAA-ATTAT-ATATTTTAATATAATATAT-TTAATAATAATTA
**** * *
7978627 TACCAAAACA-AATT---T
63 TGTTTAAATATGATTAAAT
* * *
7978642 CTAGTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATGTTTAATAATAATTAT
1 -TATTAATTATTAAGAATTTTATTAAATTATATATTTTAA-TATAATATATTTAATAATAATTAT
*
7978707 GTTTAAATATGATTAAAA
64 GTTTAAATATGATTAAAT
*
7978725 TATTTATTATT
1 TATTAATTATT
7978736 GATAATAATA
Statistics
Matches: 115, Mismatches: 38, Indels: 30
0.63 0.21 0.16
Matches are distributed among these distances:
74 1 0.01
75 9 0.08
76 7 0.06
77 7 0.06
78 29 0.25
79 29 0.25
80 7 0.06
81 7 0.06
82 19 0.17
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.47
Consensus pattern (81 bp):
TATTAATTATTAAGAATTTTATTAAATTATATATTTTAATATAATATATTTAATAATAATTATGT
TTAAATATGATTAAAT
Found at i:7978655 original size:157 final size:157
Alignment explanation
Indices: 7978489--7978798 Score: 539
Period size: 157 Copynumber: 2.0 Consensus size: 157
7978479 ATAAGAATAT
*
7978489 TAATTATTAAGAATTTTATTAAATTATATATTTTAAGTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAAGTAAAATATATTTAATAATAATTATGTTT
* *
7978554 AAATATGATTAAATTATTTATTATTCATATTAATAATCTTATCAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTCATAATAATAATCTTATCAAAATTTAAATAACAATAACAA
7978619 TAATAATTTACCAAAACAAATTTCTAG
131 TAATAATTTACCAAAACAAATTTCTAG
* *
7978646 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATGTTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAAGTAAAATATATTTAATAATAATTATGTTT
* *
7978711 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTCATAATAATAATCTTATCAAAATTTAAATAACAATAACAA
* *
7978776 TAATCATTTACCAAAATAAATTT
131 TAATAATTTACCAAAACAAATTT
7978799 ATGCTAAGGG
Statistics
Matches: 144, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
157 144 1.00
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAAGTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAAATATTTATTATTCATAATAATAATCTTATCAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTCTAG
Found at i:7978950 original size:16 final size:16
Alignment explanation
Indices: 7978929--7978996 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
7978919 GATTTGCTAT
7978929 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
7978945 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
7978961 TACACTTCTAATCCAA
1 TACACCTCTAATCCAA
*
7978977 TACATCTCTAATCCAA
1 TACACCTCTAATCCAA
7978993 TACA
1 TACA
7978997 GCGAACCAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.38, C:0.34, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:7979985 original size:22 final size:23
Alignment explanation
Indices: 7979960--7980004 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
7979950 TTTTTTTTTC
*
7979960 AAACTATGCATT-TTAATTTAAT
1 AAACTATGCATTATTAATATAAT
* *
7979982 AAACTTTTCATTATTAATATAAT
1 AAACTATGCATTATTAATATAAT
7980005 TAATTATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.42, C:0.09, G:0.02, T:0.47
Consensus pattern (23 bp):
AAACTATGCATTATTAATATAAT
Found at i:7984195 original size:18 final size:17
Alignment explanation
Indices: 7984171--7984213 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
7984161 CGAAATCGAG
*
7984171 TAATTAATTGAA-TTAA
1 TAATTAATCGAACTTAA
7984187 CTAAATTAATCGAACTTAA
1 -T-AATTAATCGAACTTAA
7984206 TAATTAAT
1 TAATTAAT
7984214 ATTATATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 8 0.35
18 11 0.48
19 4 0.17
ACGTcount: A:0.49, C:0.07, G:0.05, T:0.40
Consensus pattern (17 bp):
TAATTAATCGAACTTAA
Found at i:7989546 original size:47 final size:47
Alignment explanation
Indices: 7989492--7989583 Score: 184
Period size: 47 Copynumber: 2.0 Consensus size: 47
7989482 TATTTAATCT
7989492 TCAATACTTACGTATTCTATTTCGGATATTATTCTCTCTCAACCTAG
1 TCAATACTTACGTATTCTATTTCGGATATTATTCTCTCTCAACCTAG
7989539 TCAATACTTACGTATTCTATTTCGGATATTATTCTCTCTCAACCT
1 TCAATACTTACGTATTCTATTTCGGATATTATTCTCTCTCAACCT
7989584 GGCTAACAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.25, C:0.24, G:0.08, T:0.43
Consensus pattern (47 bp):
TCAATACTTACGTATTCTATTTCGGATATTATTCTCTCTCAACCTAG
Found at i:7990230 original size:19 final size:16
Alignment explanation
Indices: 7990188--7990223 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
7990178 TTTCTTCATA
7990188 ATATATAAATAATATT
1 ATATATAAATAATATT
7990204 ATATATAAATAATATT
1 ATATATAAATAATATT
7990220 ATAT
1 ATAT
7990224 TAGATAAGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
ATATATAAATAATATT
Found at i:8002450 original size:27 final size:27
Alignment explanation
Indices: 8002419--8002474 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
8002409 AATGTCTGGT
8002419 ACACTAGAGCTAGCAATATAAGTTCTA
1 ACACTAGAGCTAGCAATATAAGTTCTA
8002446 ACACTAGAGCTAGCAATATAAGTTCTA
1 ACACTAGAGCTAGCAATATAAGTTCTA
8002473 AC
1 AC
8002475 TGCTAATAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.25
Consensus pattern (27 bp):
ACACTAGAGCTAGCAATATAAGTTCTA
Found at i:8004135 original size:49 final size:49
Alignment explanation
Indices: 8004070--8004170 Score: 184
Period size: 49 Copynumber: 2.1 Consensus size: 49
8004060 GAACCATGTC
*
8004070 TCAGTTCATTGGCAAGGAAACATAAAAATAAATGATACGGTTAACCACA
1 TCAGTTCATTGGCAAGGAAACATAAAAATAAATGATAAGGTTAACCACA
*
8004119 TCAGTTCATTGGCAAGGAAACTTAAAAATAAATGATAAGGTTAACCACA
1 TCAGTTCATTGGCAAGGAAACATAAAAATAAATGATAAGGTTAACCACA
8004168 TCA
1 TCA
8004171 CATAATCTGC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.45, C:0.16, G:0.16, T:0.24
Consensus pattern (49 bp):
TCAGTTCATTGGCAAGGAAACATAAAAATAAATGATAAGGTTAACCACA
Found at i:8009698 original size:76 final size:77
Alignment explanation
Indices: 8009606--8009757 Score: 270
Period size: 76 Copynumber: 2.0 Consensus size: 77
8009596 AAGATTACTT
*
8009606 ATTTGAATTTAATTACAAACAATAAAATCTTAAAAAT-AAAAAATGATTATAATATACAAGTAAT
1 ATTTGAATTTAATTACAAACAATAAAATCTTAAAAATAAAAAAATAATTATAATATACAAGTAAT
8009670 CACAAACAATTA
66 CACAAACAATTA
*
8009682 ATTTGAATTTAATTACAAACAATCAAATCTTAAAAATAAAAAAATAATTATAATATACAAGTAAT
1 ATTTGAATTTAATTACAAACAATAAAATCTTAAAAATAAAAAAATAATTATAATATACAAGTAAT
*
8009747 TACAAACAATT
66 CACAAACAATT
8009758 CTGGCAAACC
Statistics
Matches: 72, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
76 36 0.50
77 36 0.50
ACGTcount: A:0.57, C:0.09, G:0.03, T:0.31
Consensus pattern (77 bp):
ATTTGAATTTAATTACAAACAATAAAATCTTAAAAATAAAAAAATAATTATAATATACAAGTAAT
CACAAACAATTA
Found at i:8011442 original size:11 final size:11
Alignment explanation
Indices: 8011426--8011450 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8011416 ATTTTTTAAC
8011426 TTTAAAATACT
1 TTTAAAATACT
8011437 TTTAAAATACT
1 TTTAAAATACT
8011448 TTT
1 TTT
8011451 TTTTAAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (11 bp):
TTTAAAATACT
Found at i:8011456 original size:15 final size:14
Alignment explanation
Indices: 8011436--8011498 Score: 51
Period size: 15 Copynumber: 4.4 Consensus size: 14
8011426 TTTAAAATAC
8011436 TTTTAAAATACTTTT
1 TTTTAAAATA-TTTT
8011451 TTTT-AAAT-TTTT
1 TTTTAAAATATTTT
**
8011463 TTAATTTTAATA-TTT
1 TT--TTAAAATATTTT
8011478 TTTTAAAATACTTTT
1 TTTTAAAATA-TTTT
8011493 TTTTAA
1 TTTTAA
8011499 TTTTAAAATA
Statistics
Matches: 39, Mismatches: 3, Indels: 12
0.72 0.06 0.22
Matches are distributed among these distances:
12 6 0.15
13 6 0.15
14 6 0.15
15 21 0.54
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTTAAAATATTTT
Found at i:8011477 original size:17 final size:17
Alignment explanation
Indices: 8011451--8011515 Score: 64
Period size: 17 Copynumber: 4.0 Consensus size: 17
8011441 AAATACTTTT
8011451 TTTTAA-ATTTTTTTAA
1 TTTTAATATTTTTTTAA
8011467 TTTTAATATTTTTTTAA
1 TTTTAATATTTTTTTAA
** *
8011484 -AATACT-TTTTTTTAA
1 TTTTAATATTTTTTTAA
* *
8011499 TTTTAAAATATTTTTAA
1 TTTTAATATTTTTTTAA
8011516 AATACTTTTT
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
15 9 0.24
16 11 0.29
17 18 0.47
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTAATATTTTTTTAA
Found at i:8011493 original size:41 final size:42
Alignment explanation
Indices: 8011417--8011502 Score: 129
Period size: 42 Copynumber: 2.1 Consensus size: 42
8011407 TTATTTTTTA
8011417 TTTTTTAACTTTAAAATACTTTTAAAATACTTTTTTTTAAAT
1 TTTTTTAACTTTAAAATACTTTTAAAATACTTTTTTTTAAAT
* * **
8011459 TTTTTTAATTTTAATATTTTTTTAAAATACTTTTTTTT-AAT
1 TTTTTTAACTTTAAAATACTTTTAAAATACTTTTTTTTAAAT
8011500 TTT
1 TTT
8011503 AAAATATTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
41 6 0.15
42 34 0.85
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (42 bp):
TTTTTTAACTTTAAAATACTTTTAAAATACTTTTTTTTAAAT
Found at i:8011499 original size:32 final size:31
Alignment explanation
Indices: 8011458--8011552 Score: 127
Period size: 32 Copynumber: 3.0 Consensus size: 31
8011448 TTTTTTTAAA
8011458 TTTTTTTAATTTTAATATTTTTTTAAAATAC
1 TTTTTTTAATTTTAATATTTTTTTAAAATAC
* *
8011489 TTTTTTTTAATTTTAAAATATTTTTAAAATAC
1 -TTTTTTTAATTTTAATATTTTTTTAAAATAC
* *
8011521 TTTTTTTAATTTTTATTTTAATTTTTAAAATA
1 TTTTTTTAATTTTAATATT--TTTTTAAAATA
8011553 AATTTTTGGT
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
31 15 0.27
32 29 0.53
33 11 0.20
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (31 bp):
TTTTTTTAATTTTAATATTTTTTTAAAATAC
Found at i:8016438 original size:58 final size:58
Alignment explanation
Indices: 8016368--8016483 Score: 205
Period size: 58 Copynumber: 2.0 Consensus size: 58
8016358 GTTAATCTAA
*
8016368 GCTTAACATAATCTAAACTTGAAATAATTCAAACTCAAAGACAACCAAATTTAAGCAC
1 GCTTAACATAATCTAAACTTGAAATAATTCAAACTCAAAGACAACCAAATCTAAGCAC
* *
8016426 GCTTAACATAATCTAAACTTGAAATTATTCAAACTCAAAGACAATCAAATCTAAGCAC
1 GCTTAACATAATCTAAACTTGAAATAATTCAAACTCAAAGACAACCAAATCTAAGCAC
8016484 TCGAATCCGC
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.47, C:0.21, G:0.07, T:0.25
Consensus pattern (58 bp):
GCTTAACATAATCTAAACTTGAAATAATTCAAACTCAAAGACAACCAAATCTAAGCAC
Found at i:8024597 original size:61 final size:61
Alignment explanation
Indices: 8024502--8024618 Score: 216
Period size: 61 Copynumber: 1.9 Consensus size: 61
8024492 AACAATAATG
* *
8024502 GAGCATCTATTTGGAGAAAAAGCTCAAGCTTTTATTGTCACATTGTTGATAATCATCTGCA
1 GAGCATCTATTAGGAGAAAAAGCTCAAGCTTTTATTGTCACATTGTTGAAAATCATCTGCA
8024563 GAGCATCTATTAGGAGAAAAAGCTCAAGCTTTTATTGTCACATTGTTGAAAATCAT
1 GAGCATCTATTAGGAGAAAAAGCTCAAGCTTTTATTGTCACATTGTTGAAAATCAT
8024619 TAGGTATTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
61 54 1.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.33
Consensus pattern (61 bp):
GAGCATCTATTAGGAGAAAAAGCTCAAGCTTTTATTGTCACATTGTTGAAAATCATCTGCA
Found at i:8029766 original size:3 final size:3
Alignment explanation
Indices: 8029758--8029788 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
8029748 CTTTACACTC
8029758 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
8029789 ATTATATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:8030584 original size:21 final size:20
Alignment explanation
Indices: 8030551--8030589 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
8030541 AACATCAGAT
*
8030551 TTTTTTTAACTTAAATTTTAG
1 TTTTTATAACTT-AATTTTAG
*
8030572 TTTTTATATCTTAATTTT
1 TTTTTATAACTTAATTTT
8030590 GAAATATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.67
Consensus pattern (20 bp):
TTTTTATAACTTAATTTTAG
Found at i:8044990 original size:27 final size:28
Alignment explanation
Indices: 8044939--8045019 Score: 78
Period size: 27 Copynumber: 2.9 Consensus size: 28
8044929 TTGGAATATT
* *
8044939 TAATAATTATTAATTAT-TTTATAATTTG
1 TAAT-ATTGTTAATAATATTTATAATTTG
*
8044967 T-ATATT-TTAATAATCATTTATAATTTT
1 TAATATTGTTAATAAT-ATTTATAATTTG
*
8044994 TACATCTTGTTAATAATATTTATAAT
1 TA-ATATTGTTAATAATATTTATAAT
8045020 ATTAATGAGT
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
25 7 0.16
26 3 0.07
27 13 0.29
28 1 0.02
29 13 0.29
30 8 0.18
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (28 bp):
TAATATTGTTAATAATATTTATAATTTG
Found at i:8048684 original size:6 final size:6
Alignment explanation
Indices: 8048645--8048757 Score: 118
Period size: 6 Copynumber: 18.8 Consensus size: 6
8048635 AAGCGGTAGT
* * * * * * * *
8048645 AGGAGT AGGAGT AGCAGC ACGAGT AGGAGC AGGTGC AGGTGC AGGTGC
1 AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC
* *
8048693 AGGAGC ACGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC ACGAGC
1 AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC
* *
8048741 AGGAGC CGGAGC CGGAG
1 AGGAGC AGGAGC AGGAG
8048758 TCGAAGCCGG
Statistics
Matches: 93, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 93 1.00
ACGTcount: A:0.29, C:0.19, G:0.47, T:0.05
Consensus pattern (6 bp):
AGGAGC
Found at i:8049610 original size:10 final size:9
Alignment explanation
Indices: 8049582--8049716 Score: 87
Period size: 9 Copynumber: 14.4 Consensus size: 9
8049572 CTAATTTTGT
8049582 AAAATTATA
1 AAAATTATA
8049591 AAAA-TATA
1 AAAATTATA
8049599 AAAATTTATA
1 AAAA-TTATA
*
8049609 AAAATGATTA
1 AAAATTA-TA
*
8049619 AATATTAATA
1 AAAATT-ATA
8049629 AAAA-TATTA
1 AAAATTA-TA
8049638 AAGAA-TATTA
1 AA-AATTA-TA
*
8049648 AAAATTAGA
1 AAAATTATA
*
8049657 AAAAATATA
1 AAAATTATA
* *
8049666 AATATTGTAA
1 AAAATTAT-A
* *
8049676 AAAATAAAA
1 AAAATTATA
8049685 AAAATTATA
1 AAAATTATA
*
8049694 AAATTTTATA
1 AAA-ATTATA
*
8049704 AAAAGTATA
1 AAAATTATA
8049713 AAAA
1 AAAA
8049717 AATTATGAAA
Statistics
Matches: 98, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
8 9 0.09
9 45 0.46
10 43 0.44
11 1 0.01
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (9 bp):
AAAATTATA
Found at i:8049639 original size:29 final size:31
Alignment explanation
Indices: 8049596--8049665 Score: 85
Period size: 29 Copynumber: 2.4 Consensus size: 31
8049586 TTATAAAAAT
* *
8049596 ATAAAAATTTATAAA-AATGATTAAATATTA-
1 ATAAAAATATATAAAGAAT-ATTAAAAATTAG
8049626 ATAAAAATAT-TAAAGAATATTAAAAATTAG
1 ATAAAAATATATAAAGAATATTAAAAATTAG
8049656 A-AAAAATATA
1 ATAAAAATATA
8049666 AATATTGTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
29 22 0.63
30 13 0.37
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.31
Consensus pattern (31 bp):
ATAAAAATATATAAAGAATATTAAAAATTAG
Found at i:8049678 original size:28 final size:28
Alignment explanation
Indices: 8049646--8049736 Score: 87
Period size: 28 Copynumber: 3.2 Consensus size: 28
8049636 TAAAGAATAT
* * *
8049646 TAAAAATTAGAAAAAATATAAATATTGTA
1 TAAAAATAAAAAAAATTATAAA-ATTGTA
*
8049675 -AAAAATAAAAAAAATTATAAAATTTTA
1 TAAAAATAAAAAAAATTATAAAATTGTA
* *
8049702 TAAAAAGTATAAAAAAATTATGAAA-TGCA
1 TAAAAA-TA-AAAAAAATTATAAAATTGTA
8049731 TAAAAA
1 TAAAAA
8049737 ATCCTTTAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
27 5 0.10
28 23 0.44
29 10 0.19
30 14 0.27
ACGTcount: A:0.66, C:0.01, G:0.05, T:0.27
Consensus pattern (28 bp):
TAAAAATAAAAAAAATTATAAAATTGTA
Found at i:8049706 original size:19 final size:19
Alignment explanation
Indices: 8049582--8049716 Score: 91
Period size: 19 Copynumber: 7.2 Consensus size: 19
8049572 CTAATTTTGT
8049582 AAAA-TTATAAAAA-TATA
1 AAAATTTATAAAAATTATA
*
8049599 AAAATTTATAAAAATGATTA
1 AAAATTTATAAAAATTA-TA
* *
8049619 AATATTAATAAAAA-TATTA
1 AAAATTTATAAAAATTA-TA
* *
8049638 AAGAATAT-TAAAAATTAGA
1 AA-AATTTATAAAAATTATA
* * *
8049657 AAAA-ATATAAATATTGTA
1 AAAATTTATAAAAATTATA
* * *
8049675 AAAAATAAAAAAAATTATA
1 AAAATTTATAAAAATTATA
* *
8049694 AAATTTTATAAAAAGTATA
1 AAAATTTATAAAAATTATA
8049713 AAAA
1 AAAA
8049717 AATTATGAAA
Statistics
Matches: 89, Mismatches: 22, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
17 6 0.07
18 23 0.26
19 42 0.47
20 18 0.20
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (19 bp):
AAAATTTATAAAAATTATA
Found at i:8049717 original size:10 final size:10
Alignment explanation
Indices: 8049582--8049722 Score: 68
Period size: 10 Copynumber: 14.8 Consensus size: 10
8049572 CTAATTTTGT
8049582 AAAATTAT-A
1 AAAATTATAA
8049591 AAAA-TATAA
1 AAAATTATAA
*
8049600 AAATTTAT-A
1 AAAATTATAA
* *
8049609 AAAATGATTA
1 AAAATTATAA
*
8049619 AATATTA-ATA
1 AAAATTATA-A
8049629 AAAA-TATTAA
1 AAAATTA-TAA
* *
8049639 AGAA-TATTA
1 AAAATTATAA
*
8049648 AAAATTAGAA
1 AAAATTATAA
8049658 AAAA-TAT-A
1 AAAATTATAA
* *
8049666 AATATTGTAA
1 AAAATTATAA
*
8049676 AAAA-TAAAA
1 AAAATTATAA
8049685 AAAATTATAA
1 AAAATTATAA
**
8049695 AATTTTAT-A
1 AAAATTATAA
*
8049704 AAAAGTATAAA
1 AAAATTAT-AA
8049715 AAAATTAT
1 AAAATTAT
8049723 GAAATGCATA
Statistics
Matches: 95, Mismatches: 25, Indels: 22
0.67 0.18 0.15
Matches are distributed among these distances:
8 7 0.07
9 39 0.41
10 40 0.42
11 9 0.09
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (10 bp):
AAAATTATAA
Found at i:8049737 original size:30 final size:27
Alignment explanation
Indices: 8049581--8049738 Score: 72
Period size: 29 Copynumber: 5.6 Consensus size: 27
8049571 TCTAATTTTG
* * *
8049581 TAAAATTAT-AAAAATATAAAAATTTA
1 TAAAATCATAAAAAATAAAAAAAATTA
* * *
8049607 TAAAAATGATTAAATATTAATAAAAATATTA
1 T-AAAATCA-TAAAAAATAA-AAAAA-ATTA
* *
8049638 -AAGAAT-ATTAAAAATTAGAAAAAA-TA
1 TAA-AATCA-TAAAAAATAAAAAAAATTA
**
8049664 TAAATATTGTAAAAAATAAAAAAAATTA
1 TAAA-ATCATAAAAAATAAAAAAAATTA
* *
8049692 TAAAATTTTATAAAAAGTATAAAAAAATTA
1 TAAAA--TCATAAAAAATA-AAAAAAATTA
*
8049722 TGAAATGCATAAAAAAT
1 TAAAAT-CATAAAAAAT
8049739 CCTTTAATCA
Statistics
Matches: 103, Mismatches: 15, Indels: 25
0.72 0.10 0.17
Matches are distributed among these distances:
26 4 0.04
27 26 0.25
28 13 0.13
29 35 0.34
30 22 0.21
31 3 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (27 bp):
TAAAATCATAAAAAATAAAAAAAATTA
Found at i:8049959 original size:10 final size:10
Alignment explanation
Indices: 8049946--8050119 Score: 71
Period size: 9 Copynumber: 17.6 Consensus size: 10
8049936 ATTTCTTTAC
8049946 ATTTTTTATA
1 ATTTTTTATA
**
8049956 ATTTTCTTACG
1 ATTTT-TTATA
* *
8049967 ACTTTATA-A
1 ATTTTTTATA
*
8049976 AATTT-TATA
1 ATTTTTTATA
*
8049985 ATTTTTTCT-
1 ATTTTTTATA
*
8049994 ATATTTCTAT-
1 AT-TTTTTATA
*
8050004 ATATTTTATA
1 ATTTTTTATA
* *
8050014 AATTTTTATG
1 ATTTTTTATA
8050024 A-TTTTTA-A
1 ATTTTTTATA
*
8050032 ATTTTTTCTA
1 ATTTTTTATA
*
8050042 A-TTTTAAT-
1 ATTTTTTATA
8050050 ATTTTTTA-A
1 ATTTTTTATA
8050059 ATTTTTTATTA
1 ATTTTTTA-TA
* *
8050070 ATATTTAAT-
1 ATTTTTTATA
8050079 ATTTTTTATA
1 ATTTTTTATA
8050089 ACTTTTATTCATA
1 A-TTTT-TT-ATA
*
8050102 TTTAATTTTATA
1 ATT--TTTTATA
8050114 ATTTTT
1 ATTTTT
8050120 GCCACATGTC
Statistics
Matches: 121, Mismatches: 26, Indels: 34
0.67 0.14 0.19
Matches are distributed among these distances:
8 4 0.03
9 52 0.43
10 31 0.26
11 18 0.15
12 9 0.07
13 5 0.04
14 2 0.02
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.63
Consensus pattern (10 bp):
ATTTTTTATA
Found at i:8050045 original size:27 final size:27
Alignment explanation
Indices: 8050025--8050086 Score: 97
Period size: 27 Copynumber: 2.2 Consensus size: 27
8050015 ATTTTTATGA
8050025 TTTTTAAATTTTTTCTAATTTTAATAT
1 TTTTTAAATTTTTTCTAATTTTAATAT
*
8050052 TTTTTAAATTTTTTATTAATATTTAATAT
1 TTTTTAAATTTTTT-CTAAT-TTTAATAT
8050081 TTTTTA
1 TTTTTA
8050087 TAACTTTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 14 0.44
28 4 0.12
29 14 0.44
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.68
Consensus pattern (27 bp):
TTTTTAAATTTTTTCTAATTTTAATAT
Found at i:8050061 original size:17 final size:17
Alignment explanation
Indices: 8050026--8050063 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
8050016 TTTTTATGAT
*
8050026 TTTTAAATTTTTTCTAA
1 TTTTAAATTTTTTCAAA
8050043 TTTTAATATTTTTT-AAA
1 TTTTAA-ATTTTTTCAAA
8050060 TTTT
1 TTTT
8050064 TTATTAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTTAAATTTTTTCAAA
Found at i:8050077 original size:29 final size:29
Alignment explanation
Indices: 8050025--8050107 Score: 109
Period size: 29 Copynumber: 2.9 Consensus size: 29
8050015 ATTTTTATGA
*
8050025 TTTTTAAATTTTTT-CTAAT-TTTAATAT
1 TTTTTAAATTTTTTATTAATATTTAATAT
8050052 TTTTTAAATTTTTTATTAATATTTAATAT
1 TTTTTAAATTTTTTATTAATATTTAATAT
* *
8050081 TTTTTATAA-CTTTTATTCATATTTAAT
1 TTTTTA-AATTTTTTATTAATATTTAAT
8050108 TTTATAATTT
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
27 14 0.28
28 4 0.08
29 30 0.60
30 2 0.04
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (29 bp):
TTTTTAAATTTTTTATTAATATTTAATAT
Found at i:8052705 original size:13 final size:13
Alignment explanation
Indices: 8052689--8052713 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8052679 ATAAACACAA
8052689 AAAATAAGAAAAT
1 AAAATAAGAAAAT
8052702 AAAATAAGAAAA
1 AAAATAAGAAAA
8052714 ACACAAGAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.08, T:0.12
Consensus pattern (13 bp):
AAAATAAGAAAAT
Found at i:8053594 original size:139 final size:139
Alignment explanation
Indices: 8053364--8053697 Score: 368
Period size: 139 Copynumber: 2.4 Consensus size: 139
8053354 GAAGTTTGTG
* * * * * ** **
8053364 GTTTTAGTCTGCTCCACTGCAACGTCAGGGAGATAAGACTT-GTATCTTCAACCTGTTAAACTGC
1 GTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGA-TTAGTAGCTTCAGTCTGCCAAACTGC
* * ** * *
8053428 GATTTCAGGGAGATAAGGTTTGATATGATAAGATCTAATTCC-A-CCTACTGCAACTTCAGAGGT
65 AACTTCAGGGAGATAAGACTTGATATGATAAAATCTAA-TCCGACCCT-CTGCAACTTCAAAGGT
* *
8053491 ATATGATTCATT
128 ATAGGATTCATC
**
8053503 GTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTCAGTCTGCCCCACTGCA
1 GTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTCAGTCTGCCAAACTGCA
* * * *
8053568 ACTTCAGGGAGATACGACTTGTTATGATAAAATTTAATCCGACCCTTTGCAACTTCAAAGGTATA
66 ACTTCAGGGAGATAAGACTTGATATGATAAAATCTAATCCGACCCTCTGCAACTTCAAAGGTATA
*
8053633 GGATTCCTC
131 GGATTCATC
* * * *
8053642 GTTTTAATCCGCTTCACTGCAACTTCAGGGACATAGGATTAGTGGCTTTAGTCTGC
1 GTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTCAGTCTGC
8053698 TCCCTTTTGT
Statistics
Matches: 164, Mismatches: 28, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
138 5 0.03
139 156 0.95
140 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.31
Consensus pattern (139 bp):
GTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTCAGTCTGCCAAACTGCA
ACTTCAGGGAGATAAGACTTGATATGATAAAATCTAATCCGACCCTCTGCAACTTCAAAGGTATA
GGATTCATC
Found at i:8057683 original size:30 final size:29
Alignment explanation
Indices: 8057649--8057713 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
8057639 TAATCCACCA
8057649 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
8057679 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
8057709 CCCAA
1 CCCAA
8057714 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:8057687 original size:31 final size:30
Alignment explanation
Indices: 8057656--8057713 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
8057646 CCACCCAACT
8057656 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
8057686 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
8057714 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:8060466 original size:24 final size:24
Alignment explanation
Indices: 8060439--8060490 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
8060429 TTAGTAAGTC
*
8060439 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
8060463 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
8060487 AAAT
1 AAAT
8060491 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:8061290 original size:95 final size:97
Alignment explanation
Indices: 8061163--8061352 Score: 303
Period size: 95 Copynumber: 2.0 Consensus size: 97
8061153 TCATACTTAC
* *
8061163 TTTCTTCTCTAGTTGGATATTTAATTGGACATTGGAAACCCTTATGATCTTGTGAACTACACTAA
1 TTTCTTCTCTAGTTAGATATTTAATTGGACATTGGAAACCCTTATGATCTTGTGAACTACACCAA
* *
8061228 TAACATTTCATAAAAGGTGATAGCTCAATCGT
66 TAACATTGCACAAAAGGTGATAGCTCAATCGT
* *
8061260 TTTC-TCTCTATTTAGAT-TTTAATTGGACATTGGAAACCCTTATGATCTTTTGAACTACACCAA
1 TTTCTTCTCTAGTTAGATATTTAATTGGACATTGGAAACCCTTATGATCTTGTGAACTACACCAA
*
8061323 TAACATTGCACAAAATGTGATAGCTCAATC
66 TAACATTGCACAAAAGGTGATAGCTCAATC
8061353 CTATTCCTCC
Statistics
Matches: 86, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
95 71 0.83
96 11 0.13
97 4 0.05
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (97 bp):
TTTCTTCTCTAGTTAGATATTTAATTGGACATTGGAAACCCTTATGATCTTGTGAACTACACCAA
TAACATTGCACAAAAGGTGATAGCTCAATCGT
Found at i:8063181 original size:24 final size:25
Alignment explanation
Indices: 8063137--8063184 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
8063127 AAACAACTCT
*
8063137 AAAAGAAACTTAAAAGTAATTCTTG
1 AAAAGAAACTCAAAAGTAATTCTTG
8063162 AAAA-AAACTCAAAGAG-AATTCTT
1 AAAAGAAACTCAAA-AGTAATTCTT
8063185 ATCAACTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.54, C:0.10, G:0.10, T:0.25
Consensus pattern (25 bp):
AAAAGAAACTCAAAAGTAATTCTTG
Found at i:8065677 original size:103 final size:104
Alignment explanation
Indices: 8065498--8065762 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 104
8065488 AACCGTTATT
* * * *
8065498 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
8065563 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
8065601 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
8065665 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
8065705 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
8065763 TTATGTACAA
Statistics
Matches: 149, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
102 1 0.01
103 82 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:8066124 original size:30 final size:29
Alignment explanation
Indices: 8066090--8066154 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
8066080 TAATCCACCA
8066090 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
8066120 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
8066150 CCCAA
1 CCCAA
8066155 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:8066128 original size:31 final size:30
Alignment explanation
Indices: 8066097--8066154 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
8066087 CCACCCAACT
8066097 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
8066127 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
8066155 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:8070366 original size:15 final size:16
Alignment explanation
Indices: 8070346--8070376 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
8070336 ATAAATATAT
8070346 ATAAAAAT-CATACAA
1 ATAAAAATACATACAA
8070361 ATAAAAATACATACAA
1 ATAAAAATACATACAA
8070377 GTATACATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.68, C:0.13, G:0.00, T:0.19
Consensus pattern (16 bp):
ATAAAAATACATACAA
Found at i:8071744 original size:13 final size:13
Alignment explanation
Indices: 8071728--8071752 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8071718 CAAACACAAA
8071728 AAAATAAGAAAAT
1 AAAATAAGAAAAT
8071741 AAAATAAGAAAA
1 AAAATAAGAAAA
8071753 ACACAAGAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.08, T:0.12
Consensus pattern (13 bp):
AAAATAAGAAAAT
Found at i:8080158 original size:3 final size:3
Alignment explanation
Indices: 8080150--8080198 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
8080140 AGGCACCCTT
8080150 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
8080198 T
1 T
8080199 TGTACTAGTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:8081543 original size:7 final size:7
Alignment explanation
Indices: 8081531--8081555 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8081521 GTAATCAAAC
8081531 GTTACAA
1 GTTACAA
8081538 GTTACAA
1 GTTACAA
8081545 GTTACAA
1 GTTACAA
8081552 GTTA
1 GTTA
8081556 ATAATATTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (7 bp):
GTTACAA
Found at i:8081601 original size:14 final size:15
Alignment explanation
Indices: 8081568--8081609 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
8081558 AATATTAGTG
8081568 ATTAAAATATAATAA
1 ATTAAAATATAATAA
*
8081583 ATTAAAATTTAAT-A
1 ATTAAAATATAATAA
*
8081597 ATTAAAATGTAAT
1 ATTAAAATATAAT
8081610 CTAAATCATA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (15 bp):
ATTAAAATATAATAA
Found at i:8089486 original size:36 final size:36
Alignment explanation
Indices: 8089439--8089576 Score: 258
Period size: 36 Copynumber: 3.8 Consensus size: 36
8089429 ATTCTTACCA
8089439 TTCATCTCGAGCAAATGGATATTTCATGTTTGGTAT
1 TTCATCTCGAGCAAATGGATATTTCATGTTTGGTAT
*
8089475 TTCATCTCGAGCAAATGGATATTTCATGTTTGATAT
1 TTCATCTCGAGCAAATGGATATTTCATGTTTGGTAT
*
8089511 TTCATATCGAGCAAATGGATATTTCATGTTTGGTAT
1 TTCATCTCGAGCAAATGGATATTTCATGTTTGGTAT
8089547 TTCATCTCGAGCAAATGGATATTTCATGTT
1 TTCATCTCGAGCAAATGGATATTTCATGTT
8089577 AAGAGTTAAG
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 98 1.00
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (36 bp):
TTCATCTCGAGCAAATGGATATTTCATGTTTGGTAT
Found at i:8095291 original size:18 final size:18
Alignment explanation
Indices: 8095268--8095303 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
8095258 TTTGAATGTG
8095268 TATATTTTAATAATTTTA
1 TATATTTTAATAATTTTA
*
8095286 TATATTTTTATAATTTTA
1 TATATTTTAATAATTTTA
8095304 AAAATAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TATATTTTAATAATTTTA
Found at i:8103862 original size:45 final size:45
Alignment explanation
Indices: 8103798--8103887 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
8103788 GAAGATTATA
8103798 AATGATAGGATAAGGCGAAGTAGATGTTGAAGATCCATATGGAGG
1 AATGATAGGATAAGGCGAAGTAGATGTTGAAGATCCATATGGAGG
8103843 AATGATAGGATAAGGCGAAGTAGATGTTGAAGATCCATATGGAGG
1 AATGATAGGATAAGGCGAAGTAGATGTTGAAGATCCATATGGAGG
8103888 CAATTGTCAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.38, C:0.07, G:0.33, T:0.22
Consensus pattern (45 bp):
AATGATAGGATAAGGCGAAGTAGATGTTGAAGATCCATATGGAGG
Found at i:8105335 original size:15 final size:14
Alignment explanation
Indices: 8105295--8105343 Score: 57
Period size: 14 Copynumber: 3.5 Consensus size: 14
8105285 AAAACTATTC
*
8105295 AAAATAAAATAAAT
1 AAAATAAAATTAAT
8105309 AAAA-ACAAATTAAT
1 AAAATA-AAATTAAT
8105323 AAAATTAAAATT-AT
1 AAAA-TAAAATTAAT
8105337 AAAATAA
1 AAAATAA
8105344 TGAATTTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
13 4 0.13
14 21 0.68
15 5 0.16
16 1 0.03
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (14 bp):
AAAATAAAATTAAT
Found at i:8109631 original size:20 final size:20
Alignment explanation
Indices: 8109606--8109645 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8109596 ATCATCTTCT
* *
8109606 AAAAAATATAAAAATTATAA
1 AAAAAACATAAAAAATATAA
8109626 AAAAAACATAAAAAATATAA
1 AAAAAACATAAAAAATATAA
8109646 TAATAAACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.20
Consensus pattern (20 bp):
AAAAAACATAAAAAATATAA
Found at i:8112595 original size:37 final size:37
Alignment explanation
Indices: 8112531--8112602 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
8112521 TTTTCATAAT
* * *
8112531 TTCACTTTTTCACTTTTAATCACTATTCAATTCAAAA
1 TTCACTTTTCCACTTTCAATCAATATTCAATTCAAAA
8112568 TTCACTTTTCCA-TTTCAAGTCAATATTCAATTCAA
1 TTCACTTTTCCACTTTCAA-TCAATATTCAATTCAA
8112603 TTCCACACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
36 5 0.16
37 26 0.84
ACGTcount: A:0.32, C:0.22, G:0.01, T:0.44
Consensus pattern (37 bp):
TTCACTTTTCCACTTTCAATCAATATTCAATTCAAAA
Found at i:8112633 original size:23 final size:22
Alignment explanation
Indices: 8112590--8112633 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
8112580 TTTCAAGTCA
8112590 ATATTCAATTCAATTCCACACAT
1 ATATTCAATTCAATT-CACACAT
8112613 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
8112634 TTAATCGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACAT
Found at i:8112758 original size:23 final size:23
Alignment explanation
Indices: 8112732--8112807 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
8112722 ATAAGTGCCA
8112732 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
8112755 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
8112778 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
8112801 CACTGAT
1 CACTGAT
8112808 CAATAACACT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:8113290 original size:30 final size:30
Alignment explanation
Indices: 8113256--8113314 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
8113246 TCCTTGACTC
8113256 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
8113286 AAACTTTTGCATATTTACACTTTTGCCCC
1 AAACTTTGGCAAAATTACAATTTTGCCCC
8113315 AAAGCTCGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:8121176 original size:42 final size:42
Alignment explanation
Indices: 8121129--8121212 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
8121119 TGCTTGCATT
8121129 AGGCTGATACTTGCCATATATGATAATCATGCCAAGGAACTC
1 AGGCTGATACTTGCCATATATGATAATCATGCCAAGGAACTC
8121171 AGGCTGATACTTGCCATATATGATAATCATGCCAAGGAACTC
1 AGGCTGATACTTGCCATATATGATAATCATGCCAAGGAACTC
8121213 TATTTCTTCT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (42 bp):
AGGCTGATACTTGCCATATATGATAATCATGCCAAGGAACTC
Found at i:8121273 original size:22 final size:22
Alignment explanation
Indices: 8121246--8121290 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
8121236 TCTTGCTTTC
8121246 AAAAAGCATGATTCCGTGTTGA
1 AAAAAGCATGATTCCGTGTTGA
8121268 AAAAAGCATGATTCCGTGTTGA
1 AAAAAGCATGATTCCGTGTTGA
8121290 A
1 A
8121291 GGATTATTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.27
Consensus pattern (22 bp):
AAAAAGCATGATTCCGTGTTGA
Found at i:8121987 original size:51 final size:51
Alignment explanation
Indices: 8121874--8121987 Score: 122
Period size: 52 Copynumber: 2.2 Consensus size: 51
8121864 ACTTATACAG
** * * *
8121874 ACAATAATGCACAAGAGGACTATGACTCATTAAACTTTATCAAAATTAAAGT
1 ACAATAATTTACAAGAGGACGATGACTCATTAAACTTTA-CAAAAGTAAAGC
* * * *
8121926 TCAATAATTTACAAGAGTACGATGACTCACTTATACTTTA-ATAAGTAAAGC
1 ACAATAATTTACAAGAGGACGATGACTCA-TTAAACTTTACAAAAGTAAAGC
8121977 ACAATAATTTA
1 ACAATAATTTA
8121988 TAAAAGGAAG
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
51 18 0.35
52 24 0.47
53 9 0.18
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.30
Consensus pattern (51 bp):
ACAATAATTTACAAGAGGACGATGACTCATTAAACTTTACAAAAGTAAAGC
Found at i:8135080 original size:31 final size:31
Alignment explanation
Indices: 8135039--8135106 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
8135029 TTACAATTTG
* *
8135039 GTCACTGAACTATTCGAAAGTTTTCATTTAA
1 GTCACTGAACTATTCAAAAATTTTCATTTAA
* * *
8135070 GTCATTGAACTATTTAAAAATTTTTATTTAA
1 GTCACTGAACTATTCAAAAATTTTCATTTAA
8135101 GTCACT
1 GTCACT
8135107 AGGTTGTTAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.43
Consensus pattern (31 bp):
GTCACTGAACTATTCAAAAATTTTCATTTAA
Found at i:8137665 original size:19 final size:18
Alignment explanation
Indices: 8137610--8137661 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
8137600 TCTTAAATAT
8137610 TTATATAATTATATATAAA
1 TTATATAATTATATAT-AA
*
8137629 TTAT-TCAATTTTGATATAA
1 TTATAT-AATTAT-ATATAA
8137648 TTATATAATTATAT
1 TTATATAATTATAT
8137662 TATATTTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
18 3 0.11
19 20 0.71
20 5 0.18
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (18 bp):
TTATATAATTATATATAA
Found at i:8138600 original size:34 final size:34
Alignment explanation
Indices: 8138557--8138625 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
8138547 ATATCCAAAA
8138557 TCTTGCTACCCTATTACCACCTACTGCCATCTTT
1 TCTTGCTACCCTATTACCACCTACTGCCATCTTT
8138591 TCTTGCTACCCTATTACCACCTACTGCCATCTTT
1 TCTTGCTACCCTATTACCACCTACTGCCATCTTT
8138625 T
1 T
8138626 TTGATCTTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.17, C:0.38, G:0.06, T:0.39
Consensus pattern (34 bp):
TCTTGCTACCCTATTACCACCTACTGCCATCTTT
Found at i:8143107 original size:20 final size:20
Alignment explanation
Indices: 8143071--8143110 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
8143061 TCCTATTGTT
8143071 GTTTTGTTACTGTTTGCTGC
1 GTTTTGTTACTGTTTGCTGC
*
8143091 GTTTCTGTTTCTG-TTGCTGC
1 GTTT-TGTTACTGTTTGCTGC
8143111 TTCCGTCATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.03, C:0.17, G:0.25, T:0.55
Consensus pattern (20 bp):
GTTTTGTTACTGTTTGCTGC
Found at i:8144156 original size:43 final size:43
Alignment explanation
Indices: 8144107--8144244 Score: 138
Period size: 43 Copynumber: 3.2 Consensus size: 43
8144097 CAAGATCTTT
8144107 TGTCTTCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTG
1 TGTCTTCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTG
* * * * * * * *
8144150 TGTCTTCGATCTGCTTCGCTGTCA-ATGCAGAAA-A-GCAAGATCTTT
1 TGTCTTCAACCAGC-T--CTATCACA-ACCGAAAGAGGCAAGGT-TTG
8144195 TGTCTTCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTG
1 TGTCTTCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTG
8144238 TGTCTTC
1 TGTCTTC
8144245 GATCTGCTTC
Statistics
Matches: 71, Mismatches: 16, Indels: 16
0.69 0.16 0.16
Matches are distributed among these distances:
42 10 0.14
43 22 0.31
44 14 0.20
45 15 0.21
46 10 0.14
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (43 bp):
TGTCTTCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTG
Found at i:8144188 original size:88 final size:88
Alignment explanation
Indices: 8143955--8144280 Score: 394
Period size: 88 Copynumber: 3.7 Consensus size: 88
8143945 AGCTCCAATG
** * * * *
8143955 CAACCGATGGAGGCAAGGCTTTGT-T-TTTGATCTGCTTTGCTGTTAATGCAAGAAGGCAAGATC
1 CAACCGAAAGAGGCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATC
** * * * *
8144018 TGCT-TCTTTAACTAGCTCCA-CTG
65 TTTTGTCTTCAACCAGCTCTATC-A
* ** * * * *
8144041 CAATCGATGGACGCAAGGCTTTGT-T-TTCAATCTGCTTCGCTGTTAATGTAGGAAGGCAAGATC
1 CAACCGAAAGAGGCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATC
8144104 TTTTGTCTTCAACCAGCTCTATCA
65 TTTTGTCTTCAACCAGCTCTATCA
* *
8144128 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAAGCAAGATCT
1 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
8144193 TTTGTCTTCAACCAGCTCTATCA
66 TTTGTCTTCAACCAGCTCTATCA
8144216 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
1 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
8144281 GTAACTTCAT
Statistics
Matches: 212, Mismatches: 24, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
86 63 0.30
87 28 0.13
88 121 0.57
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (88 bp):
CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
TTTGTCTTCAACCAGCTCTATCA
Found at i:8144274 original size:44 final size:44
Alignment explanation
Indices: 8144138--8144276 Score: 120
Period size: 44 Copynumber: 3.2 Consensus size: 44
8144128 CAACCGAAAG
*
8144138 AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAA
1 AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
* * * * * * ** ** * * *
8144182 AAGCAAGATCTTTTGTCTTCAACCAGC-TCTATCACAACCGAAAG-
1 AGGCAAGGT-TTGTGTCTTCGATCTGCTTCGCTGTCAA-TGCAGGA
8144226 AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
1 AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
8144270 AGGCAAG
1 AGGCAAG
8144277 ATCTGTAACT
Statistics
Matches: 64, Mismatches: 27, Indels: 8
0.65 0.27 0.08
Matches are distributed among these distances:
43 16 0.25
44 33 0.52
45 15 0.23
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.28
Consensus pattern (44 bp):
AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
Found at i:8155075 original size:12 final size:12
Alignment explanation
Indices: 8155058--8155085 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
8155048 AGCTTCAGTC
8155058 GCCGTCCGTCGT
1 GCCGTCCGTCGT
8155070 GCCGTCCGTCGT
1 GCCGTCCGTCGT
8155082 GCCG
1 GCCG
8155086 GCGTTGCTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.43, G:0.36, T:0.21
Consensus pattern (12 bp):
GCCGTCCGTCGT
Found at i:8155380 original size:20 final size:20
Alignment explanation
Indices: 8155344--8155383 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
8155334 TCCTATTGTT
8155344 GTTTTGTTACTGTTTGCTGC
1 GTTTTGTTACTGTTTGCTGC
*
8155364 GTTTCTGTTTCTG-TTGCTGC
1 GTTT-TGTTACTGTTTGCTGC
8155384 TTCCGTCATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.03, C:0.17, G:0.25, T:0.55
Consensus pattern (20 bp):
GTTTTGTTACTGTTTGCTGC
Found at i:8155620 original size:14 final size:14
Alignment explanation
Indices: 8155601--8155629 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
8155591 TGTCTTATTG
8155601 TCTTTTCAAAGCTA
1 TCTTTTCAAAGCTA
8155615 TCTTTTCAAAGCTA
1 TCTTTTCAAAGCTA
8155629 T
1 T
8155630 TTACTAAGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.21, G:0.07, T:0.45
Consensus pattern (14 bp):
TCTTTTCAAAGCTA
Found at i:8156193 original size:12 final size:12
Alignment explanation
Indices: 8156176--8156200 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8156166 GTACAGTATC
8156176 TTTCTCATTGAA
1 TTTCTCATTGAA
8156188 TTTCTCATTGAA
1 TTTCTCATTGAA
8156200 T
1 T
8156201 GAATGCAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.08, T:0.52
Consensus pattern (12 bp):
TTTCTCATTGAA
Found at i:8168788 original size:21 final size:21
Alignment explanation
Indices: 8168764--8168806 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
8168754 TTAATAATTT
8168764 TTTATATGAAATTTTAA-TTAA
1 TTTAT-TGAAATTTTAACTTAA
* *
8168785 TTTATTTAATTTTTAACTTAA
1 TTTATTGAAATTTTAACTTAA
8168806 T
1 T
8168807 AAATTGCCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.58
Consensus pattern (21 bp):
TTTATTGAAATTTTAACTTAA
Found at i:8175975 original size:66 final size:66
Alignment explanation
Indices: 8175869--8175997 Score: 258
Period size: 66 Copynumber: 2.0 Consensus size: 66
8175859 CATTTCAGAG
8175869 AGCACACTCCCGCGAACCTCATCCTTACAGCGGGATTACCAGTCCAGGCTAAATCCCCTGCAAGA
1 AGCACACTCCCGCGAACCTCATCCTTACAGCGGGATTACCAGTCCAGGCTAAATCCCCTGCAAGA
8175934 T
66 T
8175935 AGCACACTCCCGCGAACCTCATCCTTACAGCGGGATTACCAGTCCAGGCTAAATCCCCTGCAA
1 AGCACACTCCCGCGAACCTCATCCTTACAGCGGGATTACCAGTCCAGGCTAAATCCCCTGCAA
8175998 TATAAACTCA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.27, C:0.37, G:0.18, T:0.18
Consensus pattern (66 bp):
AGCACACTCCCGCGAACCTCATCCTTACAGCGGGATTACCAGTCCAGGCTAAATCCCCTGCAAGA
T
Found at i:8179081 original size:9 final size:9
Alignment explanation
Indices: 8179067--8179091 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
8179057 TTCTTGTCCG
8179067 ATTTTGATA
1 ATTTTGATA
8179076 ATTTTGATA
1 ATTTTGATA
8179085 ATTTTGA
1 ATTTTGA
8179092 GATTGTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (9 bp):
ATTTTGATA
Found at i:8182397 original size:21 final size:22
Alignment explanation
Indices: 8182368--8182408 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
8182358 CAATATATCA
8182368 ATTTAAATT-TAAATTTTATATG
1 ATTTAAATTGT-AATTTTATATG
8182390 ATTT-AATTGTAATTTTATA
1 ATTTAAATTGTAATTTTATA
8182409 AAAAAATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (22 bp):
ATTTAAATTGTAATTTTATATG
Found at i:8192902 original size:36 final size:36
Alignment explanation
Indices: 8192855--8192926 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
8192845 TGAGGGAAAG
8192855 AAAACTAGTCTGTGAGCATGGAAGCAGTAAACTACA
1 AAAACTAGTCTGTGAGCATGGAAGCAGTAAACTACA
*
8192891 AAAACTAGTCTGTGAGCATGGAAGTAGTAAACTACA
1 AAAACTAGTCTGTGAGCATGGAAGCAGTAAACTACA
8192927 TAAGCTCATC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.21
Consensus pattern (36 bp):
AAAACTAGTCTGTGAGCATGGAAGCAGTAAACTACA
Found at i:8194417 original size:2 final size:2
Alignment explanation
Indices: 8194410--8194471 Score: 124
Period size: 2 Copynumber: 31.0 Consensus size: 2
8194400 TTGGGAGAAT
8194410 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
8194452 AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG
8194472 CGCAAAAGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 60 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8198799 original size:19 final size:19
Alignment explanation
Indices: 8198775--8198812 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
8198765 TATCAAATAA
* *
8198775 AAAATTCATGTGTAAAATT
1 AAAATTCATATATAAAATT
8198794 AAAATTCATATATAAAATT
1 AAAATTCATATATAAAATT
8198813 GCATAAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (19 bp):
AAAATTCATATATAAAATT
Found at i:8198821 original size:29 final size:30
Alignment explanation
Indices: 8198787--8198868 Score: 112
Period size: 29 Copynumber: 2.7 Consensus size: 30
8198777 AATTCATGTG
*
8198787 TAAAATTAAAATTCATATATAAAATTG-CA
1 TAAAATTAAAATTTATATATAAAATTGACA
* *
8198816 TAAAATTAAAATTTATGTATAACATTGTACA
1 TAAAATTAAAATTTATATATAAAATTG-ACA
*
8198847 TTAAATTAAAATTTATATATAA
1 TAAAATTAAAATTTATATATAA
8198869 TTTTCAGAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 24 0.52
31 22 0.48
ACGTcount: A:0.52, C:0.05, G:0.04, T:0.39
Consensus pattern (30 bp):
TAAAATTAAAATTTATATATAAAATTGACA
Found at i:8205478 original size:18 final size:18
Alignment explanation
Indices: 8205452--8205486 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8205442 TAAATTATGC
*
8205452 ATAACAAAATAAAAATAT
1 ATAAAAAAATAAAAATAT
*
8205470 ATAAAAAAATCAAAATA
1 ATAAAAAAATAAAAATA
8205487 GAGCATTTGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.20
Consensus pattern (18 bp):
ATAAAAAAATAAAAATAT
Found at i:8206156 original size:14 final size:14
Alignment explanation
Indices: 8206137--8206167 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8206127 ATTGAACCTA
8206137 AAATTTAAAATTTG
1 AAATTTAAAATTTG
*
8206151 AAATTTGAAATTTG
1 AAATTTAAAATTTG
8206165 AAA
1 AAA
8206168 AGTAAAATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.39
Consensus pattern (14 bp):
AAATTTAAAATTTG
Found at i:8206736 original size:5 final size:5
Alignment explanation
Indices: 8206704--8206733 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
8206694 ATAGAATTTA
*
8206704 GTTCG GTTCG GTTCG GTTCG GTTCG ATTCG
1 GTTCG GTTCG GTTCG GTTCG GTTCG GTTCG
8206734 ATTTTGAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.03, C:0.20, G:0.37, T:0.40
Consensus pattern (5 bp):
GTTCG
Found at i:8207452 original size:29 final size:29
Alignment explanation
Indices: 8207410--8207471 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
8207400 TTTTATTAAA
* *
8207410 ATGAAGAGACTAAAAAAACTTAAAATAGT
1 ATGAAAAGACTAAAAAAACTTAAAATAAT
* * *
8207439 ATGAAAAGACTAAAATATCTTAGAATAAT
1 ATGAAAAGACTAAAAAAACTTAAAATAAT
8207468 ATGA
1 ATGA
8207472 CTAATTATAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.56, C:0.06, G:0.13, T:0.24
Consensus pattern (29 bp):
ATGAAAAGACTAAAAAAACTTAAAATAAT
Found at i:8215031 original size:2 final size:2
Alignment explanation
Indices: 8215024--8215060 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
8215014 TAATATCTCA
8215024 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
8215061 ACCTGTTCTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8224234 original size:26 final size:27
Alignment explanation
Indices: 8224181--8224234 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
8224171 ACTACACAAG
* *
8224181 ATTTTTAAAAATTTTAATTAAACCTTA
1 ATTTTTAAAAATTCTAATTAAACATTA
* *
8224208 ATTTTTAAAAGTTCTCATTAAA-ATTA
1 ATTTTTAAAAATTCTAATTAAACATTA
8224234 A
1 A
8224235 ACTCAAAAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.46
Consensus pattern (27 bp):
ATTTTTAAAAATTCTAATTAAACATTA
Found at i:8225945 original size:19 final size:19
Alignment explanation
Indices: 8225921--8225957 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
8225911 CCAATTTTGT
8225921 ATATAATCTTATAAATTTA
1 ATATAATCTTATAAATTTA
8225940 ATATAATCTTATAAATTT
1 ATATAATCTTATAAATTT
8225958 TCAAACTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATAATCTTATAAATTTA
Found at i:8226090 original size:6 final size:7
Alignment explanation
Indices: 8226073--8226099 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
8226063 CTTTATATGT
8226073 TTTTTAA
1 TTTTTAA
8226080 TTTTTAA
1 TTTTTAA
8226087 TTTTTAA
1 TTTTTAA
8226094 TTTTTA
1 TTTTTA
8226100 TAAATTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTTTAA
Found at i:8227579 original size:13 final size:13
Alignment explanation
Indices: 8227563--8227615 Score: 61
Period size: 13 Copynumber: 4.1 Consensus size: 13
8227553 TTTAAACTAA
*
8227563 ACTTTTCAAAAGT
1 ACTTTTCAAAAGC
*
8227576 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
* *
8227589 ACTTTTCCACAGC
1 ACTTTTCAAAAGC
*
8227602 ACTTTTTAAAAGC
1 ACTTTTCAAAAGC
8227615 A
1 A
8227616 ATGAAGAACT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 32 1.00
ACGTcount: A:0.36, C:0.25, G:0.08, T:0.32
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:8238402 original size:44 final size:44
Alignment explanation
Indices: 8238352--8238441 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
8238342 AACCCCTTTT
8238352 AACTCTTACATATAATGACAACAATATCGATGTAAATCGAGTTA
1 AACTCTTACATATAATGACAACAATATCGATGTAAATCGAGTTA
8238396 AACTCTTACATATAATGACAACAATATCGATGTAAATCGAGTTA
1 AACTCTTACATATAATGACAACAATATCGATGTAAATCGAGTTA
8238440 AA
1 AA
8238442 ACTTAGTTAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.44, C:0.16, G:0.11, T:0.29
Consensus pattern (44 bp):
AACTCTTACATATAATGACAACAATATCGATGTAAATCGAGTTA
Found at i:8255587 original size:17 final size:18
Alignment explanation
Indices: 8255565--8255598 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
8255555 GGATGACTAT
8255565 ATAAAAATT-TTAAATAA
1 ATAAAAATTATTAAATAA
8255582 ATAAAAATTATTAAATA
1 ATAAAAATTATTAAATA
8255599 TTAAATTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
ATAAAAATTATTAAATAA
Found at i:8255624 original size:26 final size:25
Alignment explanation
Indices: 8255569--8255635 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 25
8255559 GACTATATAA
* *
8255569 AAATTTTAAATAAATAAAAATTATT
1 AAATATTAAATAAATAAAAATAATT
*
8255594 AAATATTAAATTAAATTAAAATAA-T
1 AAATATTAAA-TAAATAAAAATAATT
8255619 ATAATA-TAATATAAATA
1 A-AATATTAA-ATAAATA
8255636 TTTTTAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
25 19 0.54
26 16 0.46
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (25 bp):
AAATATTAAATAAATAAAAATAATT
Found at i:8272949 original size:26 final size:24
Alignment explanation
Indices: 8272920--8272968 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
8272910 TATTAAAGTA
8272920 TATTAAATTATATTTATATAATATAT
1 TATTAAATTA-ATTTATAT-ATATAT
*
8272946 TATTAAATTAATTTGTATATATA
1 TATTAAATTAATTTATATATATA
8272969 GTCATAAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.23
25 7 0.32
26 10 0.45
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (24 bp):
TATTAAATTAATTTATATATATAT
Found at i:8278070 original size:29 final size:27
Alignment explanation
Indices: 8278016--8278080 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 27
8278006 TTAATCACTC
* *
8278016 ATTTTTATCTTTTTATAAATTGATTTT
1 ATTTTTTTCTTTTTATAAATTAATTTT
*
8278043 CTTTTTTTCTTTTTATAGAATTAAATTTT
1 ATTTTTTTCTTTTTATA-AATT-AATTTT
*
8278072 AATTTTTTC
1 ATTTTTTTC
8278081 CCAGGGAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 15 0.48
28 4 0.13
29 12 0.39
ACGTcount: A:0.25, C:0.06, G:0.03, T:0.66
Consensus pattern (27 bp):
ATTTTTTTCTTTTTATAAATTAATTTT
Found at i:8278289 original size:44 final size:43
Alignment explanation
Indices: 8278236--8278335 Score: 112
Period size: 44 Copynumber: 2.3 Consensus size: 43
8278226 ATTGAATTAT
* *
8278236 TTGAG-TTTTTATAGGGAAAAACTATTTTATTTTTTTAATTTCC
1 TTGAGTTTTTTATAGGGAAAAACCATTTTATCTTTTTAATTT-C
* * * * *
8278279 TTGGGTTTTTTTTAGGGAAGACCCATTTTCTCTTTTTAATTTC
1 TTGAGTTTTTTATAGGGAAAAACCATTTTATCTTTTTAATTTC
*
8278322 TTTAGTTTTTTATA
1 TTGAGTTTTTTATA
8278336 ATTATTTTTT
Statistics
Matches: 46, Mismatches: 10, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
43 16 0.35
44 30 0.65
ACGTcount: A:0.22, C:0.09, G:0.13, T:0.56
Consensus pattern (43 bp):
TTGAGTTTTTTATAGGGAAAAACCATTTTATCTTTTTAATTTC
Found at i:8283973 original size:19 final size:19
Alignment explanation
Indices: 8283934--8283973 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
8283924 TTTCAAAATT
*
8283934 TTTAATTATAATTAAGTAA
1 TTTAATTATAATTAAGAAA
8283953 TTTAATTA-AATTAGAGAAA
1 TTTAATTATAATTA-AGAAA
8283972 TT
1 TT
8283974 ATTAAATATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.45
Consensus pattern (19 bp):
TTTAATTATAATTAAGAAA
Found at i:8289588 original size:21 final size:22
Alignment explanation
Indices: 8289564--8289606 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
8289554 AATTAGATGT
8289564 GCTA-TAATATTTTTAGGAGGG
1 GCTACTAATATTTTTAGGAGGG
*
8289585 GCTACTTATATTTTTAGGAGGG
1 GCTACTAATATTTTTAGGAGGG
8289607 TTATAATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.26, C:0.07, G:0.28, T:0.40
Consensus pattern (22 bp):
GCTACTAATATTTTTAGGAGGG
Found at i:8297740 original size:20 final size:19
Alignment explanation
Indices: 8297708--8297748 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 19
8297698 TTATGCCAAC
8297708 AAATAATTTAAAAATTATAA
1 AAATAATTTAAAAATTA-AA
8297728 AAAT-ATTTAAAAAATTAAA
1 AAATAATTT-AAAAATTAAA
8297747 AA
1 AA
8297749 TTAAAAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
AAATAATTTAAAAATTAAA
Found at i:8297746 original size:27 final size:26
Alignment explanation
Indices: 8297715--8297768 Score: 74
Period size: 25 Copynumber: 2.0 Consensus size: 26
8297705 AACAAATAAT
8297715 TTAAAAATTATAAAAATATT-TAAAAAA
1 TTAAAAA-T-TAAAAATATTATAAAAAA
*
8297742 TTAAAAATTAAAAATATTATATAAAA
1 TTAAAAATTAAAAATATTATAAAAAA
8297768 T
1 T
8297769 ACAAAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 10 0.40
26 8 0.32
27 7 0.28
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (26 bp):
TTAAAAATTAAAAATATTATAAAAAA
Found at i:8298444 original size:3 final size:3
Alignment explanation
Indices: 8298436--8298460 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
8298426 GTCTTCATTT
8298436 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
8298461 TAAAAGTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Done.