Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 27 of 144
Found at i:8304081 original size:20 final size:20
Alignment explanation
Indices: 8304058--8304097 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
8304048 ATTATATATG
*
8304058 TGAAGTTTAAATTATGATTT
1 TGAAATTTAAATTATGATTT
* *
8304078 TGAAATTTTAATTTTGATTT
1 TGAAATTTAAATTATGATTT
8304098 AATTGTAACA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (20 bp):
TGAAATTTAAATTATGATTT
Found at i:8304811 original size:5 final size:5
Alignment explanation
Indices: 8304801--8304826 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
8304791 AGCACAAGGT
8304801 TTTTG TTTTG TTTTG TTTTG TTTTG T
1 TTTTG TTTTG TTTTG TTTTG TTTTG T
8304827 ACTTGTAACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81
Consensus pattern (5 bp):
TTTTG
Found at i:8311153 original size:3 final size:3
Alignment explanation
Indices: 8311145--8311187 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
8311135 CTGAACATGA
*
8311145 AAT AAT AAT AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
8311188 TGGGGAAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:8319410 original size:22 final size:19
Alignment explanation
Indices: 8319365--8319401 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
8319355 ATAATTTTCA
8319365 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
8319384 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
8319402 AGATATGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:8319785 original size:10 final size:11
Alignment explanation
Indices: 8319765--8319789 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8319755 GTAATATACG
8319765 AAAAAGAAAAA
1 AAAAAGAAAAA
8319776 AAAAAGAAAAA
1 AAAAAGAAAAA
8319787 AAA
1 AAA
8319790 TTTTTTTGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAA
Found at i:8323027 original size:322 final size:322
Alignment explanation
Indices: 8322442--8323088 Score: 1294
Period size: 322 Copynumber: 2.0 Consensus size: 322
8322432 AGGGGCAAAG
8322442 TTTTGTCTTAGGAACAATGAATTGTTGGCCTTTTGATTGCTTATCGTCTAAAGAAATGAATTATT
1 TTTTGTCTTAGGAACAATGAATTGTTGGCCTTTTGATTGCTTATCGTCTAAAGAAATGAATTATT
8322507 CCTTCAGATTTTAACTTTAAATGTCCAATTCCATGTTGGAATTATACACTCCAGGAATTTTACAT
66 CCTTCAGATTTTAACTTTAAATGTCCAATTCCATGTTGGAATTATACACTCCAGGAATTTTACAT
8322572 TGTTCTTAACAGCTTTAAATTACAATGTTTGGAGAGAGAAAATTAGATAAAAGGGAAGCAGCTGA
131 TGTTCTTAACAGCTTTAAATTACAATGTTTGGAGAGAGAAAATTAGATAAAAGGGAAGCAGCTGA
8322637 AAATTGACCACTATTATCATGCTGATAATGGAAGTTATTCTGGAACGAGCTAGATGGGATTCCAT
196 AAATTGACCACTATTATCATGCTGATAATGGAAGTTATTCTGGAACGAGCTAGATGGGATTCCAT
8322702 GGCCATTAGCCTAAGGACTGAAATAGGGCGGTGCAAGAGGGACTCCGTAAGCATAAGTAAAA
261 GGCCATTAGCCTAAGGACTGAAATAGGGCGGTGCAAGAGGGACTCCGTAAGCATAAGTAAAA
8322764 TTTTGTCTTAGGAACAATGAATTGTTGGCCTTTTGATTGCTTATCGTCTAAAGAAATGAATTATT
1 TTTTGTCTTAGGAACAATGAATTGTTGGCCTTTTGATTGCTTATCGTCTAAAGAAATGAATTATT
8322829 CCTTCAGATTTTAACTTTAAATGTCCAATTCCATGTTGGAATTATACACTCCAGGAATTTTACAT
66 CCTTCAGATTTTAACTTTAAATGTCCAATTCCATGTTGGAATTATACACTCCAGGAATTTTACAT
8322894 TGTTCTTAACAGCTTTAAATTACAATGTTTGGAGAGAGAAAATTAGATAAAAGGGAAGCAGCTGA
131 TGTTCTTAACAGCTTTAAATTACAATGTTTGGAGAGAGAAAATTAGATAAAAGGGAAGCAGCTGA
8322959 AAATTGACCACTATTATCATGCTGATAATGGAAGTTATTCTGGAACGAGCTAGATGGGATTCCAT
196 AAATTGACCACTATTATCATGCTGATAATGGAAGTTATTCTGGAACGAGCTAGATGGGATTCCAT
8323024 GGCCATTAGCCTAAGGACTGAAATAGGGCGGTGCAAGAGGGACTCCGTAAGCATAAGTAAAA
261 GGCCATTAGCCTAAGGACTGAAATAGGGCGGTGCAAGAGGGACTCCGTAAGCATAAGTAAAA
8323086 TTT
1 TTT
8323089 GGAGGTGGTG
Statistics
Matches: 325, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
322 325 1.00
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.32
Consensus pattern (322 bp):
TTTTGTCTTAGGAACAATGAATTGTTGGCCTTTTGATTGCTTATCGTCTAAAGAAATGAATTATT
CCTTCAGATTTTAACTTTAAATGTCCAATTCCATGTTGGAATTATACACTCCAGGAATTTTACAT
TGTTCTTAACAGCTTTAAATTACAATGTTTGGAGAGAGAAAATTAGATAAAAGGGAAGCAGCTGA
AAATTGACCACTATTATCATGCTGATAATGGAAGTTATTCTGGAACGAGCTAGATGGGATTCCAT
GGCCATTAGCCTAAGGACTGAAATAGGGCGGTGCAAGAGGGACTCCGTAAGCATAAGTAAAA
Found at i:8335097 original size:27 final size:27
Alignment explanation
Indices: 8335034--8335086 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
8335024 GTCGCGTCTG
8335034 TCAAATAGGCACGACTAATCGAGCCTA
1 TCAAATAGGCACGACTAATCGAGCCTA
*
8335061 TCAAATAGGCGCGACTAATCGAGCCT
1 TCAAATAGGCACGACTAATCGAGCCT
8335087 GATAGGTAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.34, C:0.26, G:0.21, T:0.19
Consensus pattern (27 bp):
TCAAATAGGCACGACTAATCGAGCCTA
Found at i:8335257 original size:14 final size:15
Alignment explanation
Indices: 8335240--8335269 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
8335230 GAGAGAAAGG
8335240 AGAAGAAA-AAAAAA
1 AGAAGAAAGAAAAAA
8335254 AGAAGAAAGAAAAAA
1 AGAAGAAAGAAAAAA
8335269 A
1 A
8335270 AAGGTAAGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (15 bp):
AGAAGAAAGAAAAAA
Found at i:8335404 original size:34 final size:32
Alignment explanation
Indices: 8335357--8335473 Score: 77
Period size: 33 Copynumber: 3.7 Consensus size: 32
8335347 GCTTTTTATA
*
8335357 ATTATTTTAAAATTAATTTGTTAGTAATTTAGG
1 ATTATGTTAAAATT-ATTTGTTAGTAATTTAGG
8335390 ATTATGTTATAAATT-TTTG-T-GT--TTGTA--
1 ATTATGTTA-AAATTATTTGTTAGTAATT-TAGG
* *
8335417 ATTATTTTAAAATTTATTTATTAGTAATTTAGG
1 ATTATGTTAAAA-TTATTTGTTAGTAATTTAGG
* * *
8335450 GTTAAGTTATAAATTGTTGTGTTA
1 ATTATGTTA-AAATTATT-TGTTA
8335474 ATTTAGTATT
Statistics
Matches: 64, Mismatches: 8, Indels: 23
0.67 0.08 0.24
Matches are distributed among these distances:
26 3 0.05
27 10 0.16
28 5 0.08
29 3 0.05
30 4 0.06
31 3 0.05
32 6 0.09
33 18 0.28
34 12 0.19
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (32 bp):
ATTATGTTAAAATTATTTGTTAGTAATTTAGG
Found at i:8335429 original size:60 final size:60
Alignment explanation
Indices: 8335355--8335472 Score: 191
Period size: 60 Copynumber: 2.0 Consensus size: 60
8335345 TTGCTTTTTA
* * *
8335355 TAATTATTTTAAAATTAATTTGTTAGTAATTTAGGATTATGTTATAAATTTTTGTGTTTG
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTGTGTTTG
* *
8335415 TAATTATTTTAAAATTTATTTATTAGTAATTTAGGGTTAAGTTATAAATTGTTGTGTT
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTGTGTT
8335473 AATTTAGTAT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 53 1.00
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (60 bp):
TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTGTGTTTG
Found at i:8335976 original size:15 final size:16
Alignment explanation
Indices: 8335940--8335976 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
8335930 TTTGTGATTT
8335940 TTTAATGTAATTTTTA
1 TTTAATGTAATTTTTA
*
8335956 TATAATGTAA-TTTTA
1 TTTAATGTAATTTTTA
8335971 TTTAAT
1 TTTAAT
8335977 TTTATTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.59
Consensus pattern (16 bp):
TTTAATGTAATTTTTA
Found at i:8339628 original size:13 final size:14
Alignment explanation
Indices: 8339607--8339643 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
8339597 AAATATATAT
8339607 AAAATTTTTAATGC
1 AAAATTTTTAATGC
8339621 AAAATTTTTAATGC
1 AAAATTTTTAATGC
8339635 AAAATTTTT
1 AAAATTTTT
8339644 CATTCAGAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.46
Consensus pattern (14 bp):
AAAATTTTTAATGC
Found at i:8339954 original size:27 final size:27
Alignment explanation
Indices: 8339924--8340025 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 27
8339914 GCCTCTGAGT
* * *
8339924 TAGGCACAACTAGTCACTCCTGTTAGA
1 TAGGCTCAACTAGTCACGCCTGTCAGA
*
8339951 TAGGCTCAACTAGTCACGCCTGCCAGA
1 TAGGCTCAACTAGTCACGCCTGTCAGA
* * *
8339978 TAAGCTCAACTAGTCACGCCTCTGAGA
1 TAGGCTCAACTAGTCACGCCTGTCAGA
* *
8340005 TAGGCTTAACTAGTCGCGCCT
1 TAGGCTCAACTAGTCACGCCT
8340026 ATCAAATACC
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 64 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (27 bp):
TAGGCTCAACTAGTCACGCCTGTCAGA
Found at i:8340131 original size:18 final size:18
Alignment explanation
Indices: 8340106--8340140 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
8340096 TATTTTATTA
8340106 AATAAAAAAA-TAATTTT
1 AATAAAAAAATTAATTTT
8340123 AATATAAAAAATTAATTT
1 AATA-AAAAAATTAATTT
8340141 GCGCCTGTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 6 0.38
19 6 0.38
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
AATAAAAAAATTAATTTT
Found at i:8340131 original size:19 final size:18
Alignment explanation
Indices: 8340103--8340140 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
8340093 TAATATTTTA
8340103 TTAAATAAAAAAATAATT
1 TTAAATAAAAAAATAATT
*
8340121 TTAATATAAAAAATTAATT
1 TTAA-ATAAAAAAATAATT
8340140 T
1 T
8340141 GCGCCTGTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
TTAAATAAAAAAATAATT
Found at i:8343855 original size:17 final size:19
Alignment explanation
Indices: 8343819--8343856 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
8343809 AATAAAAAAA
8343819 TTAAACTATTAATTTGGGTT
1 TTAAACTATTAA-TTGGGTT
8343839 TTAAA-TATTAA-TGGGTT
1 TTAAACTATTAATTGGGTT
8343856 T
1 T
8343857 AGGCTTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.39
19 6 0.33
20 5 0.28
ACGTcount: A:0.32, C:0.03, G:0.16, T:0.50
Consensus pattern (19 bp):
TTAAACTATTAATTGGGTT
Found at i:8344871 original size:6 final size:6
Alignment explanation
Indices: 8344860--8344885 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
8344850 ATTAAATTCT
8344860 TAAAAA TAAAAA TAAAAA TAAAAA TA
1 TAAAAA TAAAAA TAAAAA TAAAAA TA
8344886 TAAAGTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
TAAAAA
Found at i:8344875 original size:20 final size:19
Alignment explanation
Indices: 8344834--8344875 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
8344824 CCTTAATTTA
*
8344834 AAATTTTAAAAAATAAATT
1 AAATTTTAAAAAATAAAAT
8344853 AAATTCTT-AAAAATAAAAAT
1 AAATT-TTAAAAAAT-AAAAT
8344873 AAA
1 AAA
8344876 AATAAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (19 bp):
AAATTTTAAAAAATAAAAT
Found at i:8352440 original size:17 final size:15
Alignment explanation
Indices: 8352400--8352502 Score: 70
Period size: 17 Copynumber: 6.7 Consensus size: 15
8352390 TTATTTTTTA
8352400 AAATATATAAAATTT
1 AAATATATAAAATTT
*
8352415 AAATTTATAAAATTT
1 AAATATATAAAATTT
* *
8352430 AAAGTCATATATAATTA
1 AAA-T-ATATAAAATTT
*
8352447 AAATATACAAAA---
1 AAATATATAAAATTT
* *
8352459 AGAT-TATAATATTTT
1 AAATATATAA-AATTT
8352474 GAAATATATATAAATTT
1 -AAATATATA-AAATTT
8352491 ATAATATATAAA
1 A-AATATATAAA
8352503 TTAATAAAAA
Statistics
Matches: 67, Mismatches: 11, Indels: 19
0.69 0.11 0.20
Matches are distributed among these distances:
11 4 0.06
12 4 0.06
15 23 0.34
16 8 0.12
17 27 0.40
18 1 0.01
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (15 bp):
AAATATATAAAATTT
Found at i:8352503 original size:15 final size:15
Alignment explanation
Indices: 8352479--8352509 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8352469 ATTTTGAAAT
*
8352479 ATATATAAATTTATA
1 ATATATAAATTAATA
8352494 ATATATAAATTAATA
1 ATATATAAATTAATA
8352509 A
1 A
8352510 AAATTAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
ATATATAAATTAATA
Found at i:8352572 original size:15 final size:14
Alignment explanation
Indices: 8352548--8352577 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
8352538 AGAATAAAAA
8352548 ATTATAAAATATAT
1 ATTATAAAATATAT
8352562 ATTATATAAATATAT
1 ATTATA-AAATATAT
8352577 A
1 A
8352578 AAAAAAACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
ATTATAAAATATAT
Found at i:8352917 original size:18 final size:18
Alignment explanation
Indices: 8352874--8352918 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
8352864 TATTTATTAA
*
8352874 TTTATATATTTTTAAGAT
1 TTTATTTATTTTTAAGAT
*
8352892 TTTTTTTATTTTTAA-AT
1 TTTATTTATTTTTAAGAT
8352909 TTGTATTTAT
1 TT-TATTTAT
8352919 CATGTTGCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (18 bp):
TTTATTTATTTTTAAGAT
Found at i:8359858 original size:37 final size:37
Alignment explanation
Indices: 8359801--8359991 Score: 188
Period size: 37 Copynumber: 4.9 Consensus size: 37
8359791 TATGATCACT
*
8359801 TATCAC-TTGTC-CCTGATCAGATAAGTGTAGCCACC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
* *
8359836 TATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACT
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
*
8359873 TATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCAC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAG-C----C-A-C-C
* * * *
8359918 TTATCACTTTGTCACTTGATCAGATAAGGGTAGCTAAACT
1 -TATCACTTTGTCTCTTGATCAGATAAGTGTAGC--CACC
*
8359958 TATCACTTTGTCTCTTGATCAGATAAGTATAGCC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCC
8359992 GTAGCTATCA
Statistics
Matches: 128, Mismatches: 17, Indels: 20
0.78 0.10 0.12
Matches are distributed among these distances:
35 6 0.05
36 4 0.03
37 52 0.41
38 1 0.01
39 30 0.23
41 1 0.01
42 2 0.02
43 1 0.01
44 1 0.01
45 1 0.01
46 29 0.23
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.35
Consensus pattern (37 bp):
TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
Found at i:8359936 original size:46 final size:46
Alignment explanation
Indices: 8359869--8360162 Score: 350
Period size: 52 Copynumber: 6.3 Consensus size: 46
8359859 TAAGTGTAGC
*
8359869 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
8359915 CACTTATCACTTTGTCACTTGATCAGATAAG----G--GTAGCTA-
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
* * *
8359954 AACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGTAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
8360000 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
* *
8360052 TACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
8360104 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
8360150 TACTTATCACTTT
1 CACTTATCACTTT
8360163 CCACTTGTCA
Statistics
Matches: 222, Mismatches: 13, Indels: 26
0.85 0.05 0.10
Matches are distributed among these distances:
39 29 0.13
40 6 0.03
42 1 0.00
43 1 0.00
45 7 0.03
46 84 0.38
49 2 0.01
52 92 0.41
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
Found at i:8360138 original size:98 final size:101
Alignment explanation
Indices: 8359955--8360182 Score: 354
Period size: 98 Copynumber: 2.2 Consensus size: 101
8359945 GGGTAGCTAA
* * *
8359955 ACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGTAGCTATCACTTATCACTTTTCACTTG
1 ACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTTCA--T-
8360020 TCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATC
62 TCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATC
*
8360060 ACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCAC-TTT-A-TCAC
1 ACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTTCATTCAC
8360122 TTGATCAGATAAGTATAGCCGAAGCTATTACTTATC
66 TTGATCAGATAAGTATAGCCGAAGCTATTACTTATC
*
8360158 ACTTTCCACTTGTCACTTGATCAGA
1 ACTTTTCACTTGTCACTTGATCAGA
8360183 AGTACTCAAA
Statistics
Matches: 118, Mismatches: 5, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
98 64 0.54
102 1 0.01
103 3 0.03
104 42 0.36
105 8 0.07
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (101 bp):
ACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTTCATTCAC
TTGATCAGATAAGTATAGCCGAAGCTATTACTTATC
Found at i:8367515 original size:30 final size:29
Alignment explanation
Indices: 8367425--8367518 Score: 82
Period size: 30 Copynumber: 3.1 Consensus size: 29
8367415 TTTGGTCATT
* *
8367425 CAATTATGATGTTTTTTAAAATTGATCACC
1 CAATTATGAT-TTTTTTTAATTTGATCACC
* * * *
8367455 TAACTATGGATTTGTTTCTT-CTTTGGTCACC
1 CAATTAT-GATTT-TTT-TTAATTTGATCACC
8367486 CAATTATGAATTTTTTTTAATTTGATCACC
1 CAATTATG-ATTTTTTTTAATTTGATCACC
8367516 CAA
1 CAA
8367519 CTAATCGATT
Statistics
Matches: 49, Mismatches: 10, Indels: 10
0.71 0.14 0.14
Matches are distributed among these distances:
29 2 0.04
30 23 0.47
31 23 0.47
32 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.11, T:0.46
Consensus pattern (29 bp):
CAATTATGATTTTTTTTAATTTGATCACC
Found at i:8367726 original size:22 final size:22
Alignment explanation
Indices: 8367684--8367736 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
8367674 CTAAAAAATA
*
8367684 AAAAAAATACATAAATATTTTT
1 AAAAATATACATAAATATTTTT
*
8367706 AAAAATATA-ATAATATTTTTTT
1 AAAAATATACATAA-ATATTTTT
8367728 AAAAATATA
1 AAAAATATA
8367737 TAAAATAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 4 0.14
22 24 0.86
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (22 bp):
AAAAATATACATAAATATTTTT
Found at i:8367742 original size:51 final size:52
Alignment explanation
Indices: 8367677--8367839 Score: 143
Period size: 51 Copynumber: 3.1 Consensus size: 52
8367667 CCTAATTCTA
* * * **
8367677 AAAAATAAAAAAAATACATAAATATTTTTAAAAATATAATAATAT-T-TTTTT
1 AAAAATATATAAAATACATAAATATTTTCAAAAA-ATAATAATATATAACTTT
* * *
8367728 AAAAATATATAAAATAAAAAAATATTGTTGACAATAAATAATAATATATAAACTTT
1 AAAAATATATAAAATACATAAATATT-TT--CAAAAAATAATAATATAT-AACTTT
* * *
8367784 AAAAGTATATAAAAATACATTAATATTTTCAAAAAATATATAATA-ATAAATTT
1 AAAAATATAT-AAAATACATAAATATTTTCAAAAAATA-ATAATATATAACTTT
8367837 AAA
1 AAA
8367840 TTATATATTA
Statistics
Matches: 90, Mismatches: 14, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
51 22 0.24
52 2 0.02
53 18 0.20
54 15 0.17
55 6 0.07
56 14 0.16
57 13 0.14
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.35
Consensus pattern (52 bp):
AAAAATATATAAAATACATAAATATTTTCAAAAAATAATAATATATAACTTT
Found at i:8370041 original size:24 final size:24
Alignment explanation
Indices: 8370007--8370053 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
8369997 GTACTTCTTA
*
8370007 TTAATTACTCTTCGGAGCTACCCG
1 TTAATTACTCTTCGGAACTACCCG
* *
8370031 TTAATTGCTCTTTGGAACTACCC
1 TTAATTACTCTTCGGAACTACCC
8370054 ATTATAGGCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.36
Consensus pattern (24 bp):
TTAATTACTCTTCGGAACTACCCG
Found at i:8381617 original size:21 final size:21
Alignment explanation
Indices: 8381578--8381617 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8381568 CAAAAAAAAT
**
8381578 TGCTATTTTTTGTTATTTTAA
1 TGCTATTTTTTACTATTTTAA
*
8381599 TGCTATTTTTTACTGTTTT
1 TGCTATTTTTTACTATTTT
8381618 CTTCCTATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.15, C:0.07, G:0.10, T:0.68
Consensus pattern (21 bp):
TGCTATTTTTTACTATTTTAA
Found at i:8383805 original size:16 final size:15
Alignment explanation
Indices: 8383749--8383810 Score: 56
Period size: 16 Copynumber: 4.1 Consensus size: 15
8383739 TAGATTTTTT
*
8383749 TTAAAAAATAAAATAA
1 TTAAAAAATTAAAT-A
* *
8383765 TTATAAAA-TATA-A
1 TTAAAAAATTAAATA
*
8383778 TTAAAATATTAAATA
1 TTAAAAAATTAAATA
8383793 TTAAAAAAGTTAAATA
1 TTAAAAAA-TTAAATA
8383809 TT
1 TT
8383811 TTTATTATAT
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
13 7 0.19
14 3 0.08
15 10 0.28
16 16 0.44
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (15 bp):
TTAAAAAATTAAATA
Found at i:8385199 original size:2 final size:2
Alignment explanation
Indices: 8385192--8385230 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
8385182 CACTCCCCTC
* *
8385192 CT CT CT CT CT CT CT CT CC CT CT CT CC CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
8385231 CTTTGCAATG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (2 bp):
CT
Found at i:8412960 original size:20 final size:20
Alignment explanation
Indices: 8412908--8412961 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 20
8412898 TGTCATGCGA
*
8412908 ATAAAGAAT-T-TAAAAATT
1 ATAAAGAATATATAAAAATG
* *
8412926 ATAAA-ATAAAAATAAAAATG
1 ATAAAGA-ATATATAAAAATG
8412946 ATAAAGAATATATAAA
1 ATAAAGAATATATAAA
8412962 TATTTCATAG
Statistics
Matches: 27, Mismatches: 5, Indels: 6
0.71 0.13 0.16
Matches are distributed among these distances:
17 1 0.04
18 6 0.22
20 19 0.70
21 1 0.04
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.26
Consensus pattern (20 bp):
ATAAAGAATATATAAAAATG
Found at i:8415049 original size:33 final size:33
Alignment explanation
Indices: 8415012--8415094 Score: 89
Period size: 33 Copynumber: 2.5 Consensus size: 33
8415002 TCAAAAACCT
8415012 CAGACTTGAAATCACTTCTTTTATCATAAA-TCC
1 CAGACTTGAAATCACTTCTTTTATCATAAACT-C
* * *
8415045 CAGACTTGAAGGTC-CTTCTTTTATTATGAACTC
1 CAGACTTGAA-ATCACTTCTTTTATCATAAACTC
* *
8415078 CAGACTTCAAATTACTT
1 CAGACTTGAAATCACTT
8415095 ACCTTGGCAT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
32 1 0.02
33 37 0.90
34 3 0.07
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (33 bp):
CAGACTTGAAATCACTTCTTTTATCATAAACTC
Found at i:8417219 original size:4 final size:4
Alignment explanation
Indices: 8417210--8417248 Score: 78
Period size: 4 Copynumber: 9.8 Consensus size: 4
8417200 CAGTTTCTTC
8417210 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT
8417249 GCTCAAACCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.51
Consensus pattern (4 bp):
TGTA
Found at i:8422791 original size:22 final size:22
Alignment explanation
Indices: 8422762--8422827 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
8422752 TGCACTAATG
8422762 AACAGAGAGCACTAAAGTGCTA
1 AACAGAGAGCACTAAAGTGCTA
*
8422784 TACAGAGAGCAC-AAATGTGCTA
1 AACAGAGAGCACTAAA-GTGCTA
* *
8422806 AACAGAGAGCACTGACGTGCTA
1 AACAGAGAGCACTAAAGTGCTA
8422828 GTAATCAAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
21 3 0.08
22 34 0.89
23 1 0.03
ACGTcount: A:0.41, C:0.20, G:0.24, T:0.15
Consensus pattern (22 bp):
AACAGAGAGCACTAAAGTGCTA
Found at i:8423500 original size:19 final size:19
Alignment explanation
Indices: 8423476--8423514 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
8423466 GTGTTTTATT
8423476 TTACAAATCAATCCTTTAC
1 TTACAAATCAATCCTTTAC
8423495 TTACAAATCAATCCTTTAC
1 TTACAAATCAATCCTTTAC
8423514 T
1 T
8423515 AACTTCTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.26, G:0.00, T:0.38
Consensus pattern (19 bp):
TTACAAATCAATCCTTTAC
Found at i:8423829 original size:5 final size:5
Alignment explanation
Indices: 8423819--8423857 Score: 71
Period size: 5 Copynumber: 8.0 Consensus size: 5
8423809 TTCTTTTATT
8423819 ATATA ATATA ATATA ATATA ATATA ATATA ATAT- ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
8423858 CTTAACTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.12
5 29 0.88
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:8425859 original size:13 final size:13
Alignment explanation
Indices: 8425856--8425905 Score: 55
Period size: 13 Copynumber: 3.5 Consensus size: 13
8425846 CAACCCAATT
8425856 ACCCAATTACCCA
1 ACCCAATTACCCA
*
8425869 ACACAATTACCAACCCA
1 ACCCAATT----ACCCA
8425886 ACCCAATTACCCA
1 ACCCAATTACCCA
8425899 ACCCAAT
1 ACCCAAT
8425906 AAAACTAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
13 19 0.61
17 12 0.39
ACGTcount: A:0.42, C:0.44, G:0.00, T:0.14
Consensus pattern (13 bp):
ACCCAATTACCCA
Found at i:8425886 original size:17 final size:18
Alignment explanation
Indices: 8425843--8425904 Score: 72
Period size: 17 Copynumber: 3.3 Consensus size: 18
8425833 AAAACCCGTT
*
8425843 ACCCAACCCAATTACCCAA
1 ACCCAACACAATTACCC-A
8425862 TTACCCAACACAATTA-CCA
1 --ACCCAACACAATTACCCA
*
8425881 ACCCAACCCAATTACCCA
1 ACCCAACACAATTACCCA
8425899 ACCCAA
1 ACCCAA
8425905 TAAAACTAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
17 13 0.34
18 9 0.24
19 1 0.03
20 2 0.05
21 13 0.34
ACGTcount: A:0.42, C:0.45, G:0.00, T:0.13
Consensus pattern (18 bp):
ACCCAACACAATTACCCA
Found at i:8425943 original size:38 final size:39
Alignment explanation
Indices: 8425886--8425963 Score: 131
Period size: 38 Copynumber: 2.0 Consensus size: 39
8425876 TACCAACCCA
*
8425886 ACCCAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
1 ACCCAATTACCCAACCCAATAAAAATAAAACTAAAGTCT
*
8425925 ACCCAATTA-TCAACCCAATAAAAATAAAACTAAAGTCT
1 ACCCAATTACCCAACCCAATAAAAATAAAACTAAAGTCT
8425963 A
1 A
8425964 ACTCTTTAGT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
38 28 0.76
39 9 0.24
ACGTcount: A:0.51, C:0.27, G:0.03, T:0.19
Consensus pattern (39 bp):
ACCCAATTACCCAACCCAATAAAAATAAAACTAAAGTCT
Found at i:8426168 original size:37 final size:37
Alignment explanation
Indices: 8426097--8426171 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 37
8426087 TGTTAATTTC
* ** *
8426097 AAGAATTATGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGAATTATGTAATATTTTTAATTATACACTGATTCA
*
8426134 AAGACTTATGTAATATTTTTAATTATACACTGATTCA
1 AAGAATTATGTAATATTTTTAATTATACACTGATTCA
8426171 A
1 A
8426172 TTCGGGTAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.37, C:0.07, G:0.12, T:0.44
Consensus pattern (37 bp):
AAGAATTATGTAATATTTTTAATTATACACTGATTCA
Found at i:8426184 original size:9 final size:9
Alignment explanation
Indices: 8426170--8426200 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
8426160 ACACTGATTC
8426170 AATTCGGGT
1 AATTCGGGT
8426179 AATTCGGGT
1 AATTCGGGT
*
8426188 AATTCGGTT
1 AATTCGGGT
8426197 AATT
1 AATT
8426201 TTTAACTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.26, C:0.10, G:0.26, T:0.39
Consensus pattern (9 bp):
AATTCGGGT
Found at i:8428709 original size:23 final size:23
Alignment explanation
Indices: 8428656--8428709 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
8428646 ACTAGTGATA
*
8428656 AATACATTATTTTAAATATAAAT
1 AATACAATATTTTAAATATAAAT
**
8428679 AATA-AATATATTTAAATA-ATTT
1 AATACAATAT-TTTAAATATAAAT
8428701 AATACAATA
1 AATACAATA
8428710 ATACATAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 10 0.38
23 16 0.62
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.41
Consensus pattern (23 bp):
AATACAATATTTTAAATATAAAT
Found at i:8431956 original size:67 final size:66
Alignment explanation
Indices: 8431805--8431956 Score: 162
Period size: 67 Copynumber: 2.3 Consensus size: 66
8431795 GGGACATTAA
* * *
8431805 ACCATAGCTCGGATATGACAACATAGAGAATCCGCTAGGACATTAACAATGGGGTATAAAGTGTA
1 ACCATAGCTC-GATATGGCAACATAAAGAATCCGCTAGGACATAAACAATGGGGTATAAAGTGTA
8431870 AG
65 AG
* * * * * * * *
8431872 ACCATAACTTGGTTATGGCAACATAAAGAGTCTGTTAGGATACTAAAC-ATGGGGTATAATGTGT
1 ACCATAGC-TCGATATGGCAACATAAAGAATCCGCTAGGACA-TAAACAATGGGGTATAAAGTGT
8431936 AAG
64 AAG
8431939 ACCATAGCTCGACTATGG
1 ACCATAGCTCGA-TATGG
8431957 GGTATAAATC
Statistics
Matches: 68, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
66 2 0.03
67 61 0.90
68 5 0.07
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (66 bp):
ACCATAGCTCGATATGGCAACATAAAGAATCCGCTAGGACATAAACAATGGGGTATAAAGTGTAA
G
Found at i:8432384 original size:18 final size:19
Alignment explanation
Indices: 8432336--8432376 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
8432326 ATGACTATAG
* *
8432336 AAAAATTAAAATTAATTCT
1 AAAAAATAAAATAAATTCT
8432355 AAAAAATAAAATAAATT-T
1 AAAAAATAAAATAAATTCT
8432373 AAAA
1 AAAA
8432377 GGTAAAATGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (19 bp):
AAAAAATAAAATAAATTCT
Found at i:8435871 original size:21 final size:21
Alignment explanation
Indices: 8435845--8435890 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
8435835 TATGATGTAG
*
8435845 TTCTCTATTATTAGTTGGATT
1 TTCTCTATTATTAGCTGGATT
*
8435866 TTCTCTTTTATTAGCTGGATT
1 TTCTCTATTATTAGCTGGATT
8435887 TTCT
1 TTCT
8435891 TTAAACAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.15, C:0.13, G:0.13, T:0.59
Consensus pattern (21 bp):
TTCTCTATTATTAGCTGGATT
Found at i:8438043 original size:31 final size:31
Alignment explanation
Indices: 8437998--8438072 Score: 116
Period size: 31 Copynumber: 2.4 Consensus size: 31
8437988 AGTTAGTGGC
*
8437998 TATTATGTGTCTTTATATTAAGAGTTAGATTG
1 TATTTTGT-TCTTTATATTAAGAGTTAGATTG
*
8438030 TATTTTGTTCTTTATATTAGGAGTTAGATTG
1 TATTTTGTTCTTTATATTAAGAGTTAGATTG
8438061 TATTTTG-TCTTT
1 TATTTTGTTCTTT
8438073 TTAACCTCTG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
30 5 0.12
31 29 0.71
32 7 0.17
ACGTcount: A:0.23, C:0.04, G:0.17, T:0.56
Consensus pattern (31 bp):
TATTTTGTTCTTTATATTAAGAGTTAGATTG
Found at i:8438357 original size:20 final size:19
Alignment explanation
Indices: 8438329--8438391 Score: 67
Period size: 20 Copynumber: 3.3 Consensus size: 19
8438319 TGTGGTTTTT
*
8438329 TAAATAATTATTAAACAATA
1 TAAAAAATTATTAAA-AATA
8438349 TAAAAAATTATTAAAAA-A
1 TAAAAAATTATTAAAAATA
* *
8438367 T-TAAATTTATTAAAAATAA
1 TAAAAAATTATTAAAAAT-A
8438386 TAAAAA
1 TAAAAA
8438392 GTATTTAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
17 13 0.36
18 2 0.06
19 4 0.11
20 17 0.47
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (19 bp):
TAAAAAATTATTAAAAATA
Found at i:8438365 original size:11 final size:11
Alignment explanation
Indices: 8438328--8438369 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
8438318 ATGTGGTTTT
*
8438328 TTAAATAATTA
1 TTAAAAAATTA
*
8438339 TTAAACAA-TA
1 TTAAAAAATTA
8438349 -TAAAAAATTA
1 TTAAAAAATTA
8438359 TTAAAAAATTA
1 TTAAAAAATTA
8438370 AATTTATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
9 6 0.22
10 4 0.15
11 17 0.63
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (11 bp):
TTAAAAAATTA
Found at i:8439213 original size:30 final size:30
Alignment explanation
Indices: 8439177--8439245 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
8439167 CTTACAAGGA
8439177 CGTTCAAGAACTTGAGAAGAC-CTGATATCT
1 CGTTCAAGAACTTGAGAAGACTC-GATATCT
** *
8439207 CGTTCAAGAGTTTGGGAAGACTCGATATCT
1 CGTTCAAGAACTTGAGAAGACTCGATATCT
*
8439237 TGTTCAAGA
1 CGTTCAAGA
8439246 TCTTCAGATT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 33 0.97
31 1 0.03
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.29
Consensus pattern (30 bp):
CGTTCAAGAACTTGAGAAGACTCGATATCT
Found at i:8440838 original size:19 final size:18
Alignment explanation
Indices: 8440790--8440841 Score: 95
Period size: 18 Copynumber: 2.8 Consensus size: 18
8440780 TACCGCTATA
8440790 TAACGGCCGCTATTTCGG
1 TAACGGCCGCTATTTCGG
8440808 TAACGGCCGCTATTTCGG
1 TAACGGCCGCTATTTCGG
8440826 TAACGGACCGCTATTT
1 TAACGG-CCGCTATTT
8440842 AAATCCCTGG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
18 24 0.73
19 9 0.27
ACGTcount: A:0.19, C:0.27, G:0.25, T:0.29
Consensus pattern (18 bp):
TAACGGCCGCTATTTCGG
Found at i:8441637 original size:18 final size:18
Alignment explanation
Indices: 8441614--8441649 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
8441604 TACATAGATT
8441614 TTTTAATATCTATTTAAA
1 TTTTAATATCTATTTAAA
8441632 TTTTAATATCTATTTAAA
1 TTTTAATATCTATTTAAA
8441650 ATTGGCGCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTTAATATCTATTTAAA
Found at i:8443060 original size:37 final size:37
Alignment explanation
Indices: 8443019--8443232 Score: 365
Period size: 37 Copynumber: 5.8 Consensus size: 37
8443009 TTTGAGTACT
8443019 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
* *
8443056 TCTGATCAAGAGACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
8443093 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
8443130 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
* *
8443167 TCTGATCAAGAGACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
** *
8443204 TCTGATCAAGTGATAAAGTGATAAGTGGT
1 TCTGATCAAGAAACAAAGTGATAAGTGGT
8443233 AGCTTCAGCT
Statistics
Matches: 168, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 168 1.00
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.27
Consensus pattern (37 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
Found at i:8443303 original size:45 final size:46
Alignment explanation
Indices: 8443194--8443317 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
8443184 GTGATAAGTG
* *
8443194 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
*
8443240 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCT-A
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
8443285 GCTACACTTATCTGATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
8443318 AGGTCATATG
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 21 0.28
46 41 0.55
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
Found at i:8450794 original size:37 final size:37
Alignment explanation
Indices: 8450753--8450891 Score: 233
Period size: 37 Copynumber: 3.8 Consensus size: 37
8450743 TTTGAGTACT
8450753 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
8450790 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
8450827 TCTGATCAAGAGACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
** *
8450864 TCTGATCAAGTGATAAAGTGATAAGTGG
1 TCTGATCAAGAAACAAAGTGATAAGTGG
8450892 TAGCTTCAGC
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.26
Consensus pattern (37 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
Found at i:8450963 original size:45 final size:46
Alignment explanation
Indices: 8450854--8450977 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
8450844 GTGATAAGTG
* *
8450854 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
*
8450900 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCT-A
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
8450945 GCTACACTTATCTGATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
8450978 AGGTCATATG
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 21 0.28
46 41 0.55
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
Found at i:8455105 original size:12 final size:12
Alignment explanation
Indices: 8455090--8455116 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8455080 CCCATATTAA
8455090 TTTTTATATAAT
1 TTTTTATATAAT
8455102 TTTTTATATAAT
1 TTTTTATATAAT
8455114 TTT
1 TTT
8455117 AAAATATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (12 bp):
TTTTTATATAAT
Found at i:8455250 original size:30 final size:30
Alignment explanation
Indices: 8455214--8455279 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
8455204 ACTTAAATAA
8455214 TAACAAATGTCTCTAAAATAATAACAAAAT
1 TAACAAATGTCTCTAAAATAATAACAAAAT
* *
8455244 TAACAAATGTCTTTAAACTAATAACAAAAT
1 TAACAAATGTCTCTAAAATAATAACAAAAT
8455274 TAACAA
1 TAACAA
8455280 TAAAATAAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.56, C:0.14, G:0.03, T:0.27
Consensus pattern (30 bp):
TAACAAATGTCTCTAAAATAATAACAAAAT
Found at i:8457163 original size:9 final size:9
Alignment explanation
Indices: 8457144--8457215 Score: 51
Period size: 9 Copynumber: 8.0 Consensus size: 9
8457134 TAATAATATT
8457144 AAAAT-ATA
1 AAAATAATA
8457152 AAAATAATA
1 AAAATAATA
8457161 AAAATAAT-
1 AAAATAATA
*
8457169 AAAGTAATTA
1 AAAATAA-TA
*
8457179 AAAATCATA
1 AAAATAATA
* *
8457188 CTATATAAT-
1 -AAAATAATA
*
8457197 AAAGTAATA
1 AAAATAATA
8457206 AAAGATAATA
1 AAA-ATAATA
8457216 CTATATATAC
Statistics
Matches: 48, Mismatches: 10, Indels: 10
0.71 0.15 0.15
Matches are distributed among these distances:
8 16 0.33
9 17 0.35
10 15 0.31
ACGTcount: A:0.67, C:0.03, G:0.04, T:0.26
Consensus pattern (9 bp):
AAAATAATA
Found at i:8457176 original size:17 final size:16
Alignment explanation
Indices: 8457141--8457183 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
8457131 TGGTAATAAT
8457141 ATTAAAATATAAAAATA
1 ATTAAAA-ATAAAAATA
8457158 A-TAAAAATAATAAAGTA
1 ATTAAAAATAA-AAA-TA
8457175 ATTAAAAAT
1 ATTAAAAAT
8457184 CATACTATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
15 4 0.17
16 8 0.35
17 4 0.17
18 7 0.30
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (16 bp):
ATTAAAAATAAAAATA
Found at i:8457182 original size:28 final size:27
Alignment explanation
Indices: 8457149--8457330 Score: 95
Period size: 28 Copynumber: 6.5 Consensus size: 27
8457139 ATATTAAAAT
8457149 ATAAAAATAATA-AAAATAATAAAGTA
1 ATAAAAATAATACAAAATAATAAAGTA
* * *
8457175 ATTAAAAATCATACTATATAATAAAGTA
1 A-TAAAAATAATACAAAATAATAAAGTA
* * *
8457203 ATAAAAGATAATACTATATATACATGTACGTA
1 ATAAAA-ATAATAC-A-AAATA-AT-AAAGTA
** * *
8457235 ATATATGTATATTA-GAAATAAT-AA-TCA
1 ATA-A-AAATAATACAAAATAATAAAGT-A
*
8457262 AAAAATAATAATA-AAAATAATAAAGTA
1 ATAAA-AATAATACAAAATAATAAAGTA
* * *
8457289 ATTAAAAATTATACTAAATAATGAAGTA
1 A-TAAAAATAATACAAAATAATAAAGTA
8457317 ATAAAAGATAATAC
1 ATAAAA-ATAATAC
8457331 TATATATACA
Statistics
Matches: 117, Mismatches: 23, Indels: 30
0.69 0.14 0.18
Matches are distributed among these distances:
26 15 0.13
27 34 0.29
28 42 0.36
29 2 0.02
30 9 0.08
31 2 0.02
32 7 0.06
33 6 0.05
ACGTcount: A:0.60, C:0.04, G:0.06, T:0.29
Consensus pattern (27 bp):
ATAAAAATAATACAAAATAATAAAGTA
Found at i:8457269 original size:14 final size:12
Alignment explanation
Indices: 8457250--8457284 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
8457240 TGTATATTAG
8457250 AAATAATAATCAAA
1 AAATAATAAT--AA
8457264 AAATAATAATAA
1 AAATAATAATAA
8457276 AAATAATAA
1 AAATAATAA
8457285 AGTAATTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 11 0.52
14 10 0.48
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (12 bp):
AAATAATAATAA
Found at i:8457410 original size:114 final size:114
Alignment explanation
Indices: 8457154--8457373 Score: 413
Period size: 114 Copynumber: 1.9 Consensus size: 114
8457144 AAAATATAAA
*
8457154 AATAATAAAAATAATAAAGTAATTAAAAATCATACTATATAATAAAGTAATAAAAGATAATACTA
1 AATAATAAAAATAATAAAGTAATTAAAAATCATACTAAATAATAAAGTAATAAAAGATAATACTA
8457219 TATATACATGTACGTAATATATGTATATTAGAAATAATAATCAAAAAAT
66 TATATACATGTACGTAATATATGTATATTAGAAATAATAATCAAAAAAT
* *
8457268 AATAATAAAAATAATAAAGTAATTAAAAATTATACTAAATAATGAAGTAATAAAAGATAATACTA
1 AATAATAAAAATAATAAAGTAATTAAAAATCATACTAAATAATAAAGTAATAAAAGATAATACTA
8457333 TATATACATGTACGTAATATATGTATATTAGAAATAATAAT
66 TATATACATGTACGTAATATATGTATATTAGAAATAATAAT
8457374 AGGAGTTATA
Statistics
Matches: 103, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
114 103 1.00
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.31
Consensus pattern (114 bp):
AATAATAAAAATAATAAAGTAATTAAAAATCATACTAAATAATAAAGTAATAAAAGATAATACTA
TATATACATGTACGTAATATATGTATATTAGAAATAATAATCAAAAAAT
Found at i:8461123 original size:83 final size:83
Alignment explanation
Indices: 8460984--8461149 Score: 323
Period size: 83 Copynumber: 2.0 Consensus size: 83
8460974 TTTATTTTAT
8460984 CATTATAAATTATTTCACAACCTTTGATATTCTGAATTTCAACACTAACATCTAATTCACAACTT
1 CATTATAAATTATTTCACAACCTTTGATATTCTGAATTTCAACACTAACATCTAATTCACAACTT
8461049 TTTCACAATTAGGTCCTA
66 TTTCACAATTAGGTCCTA
8461067 CATTATAAATTATTTCACAACCTTTGATATTCTGAATTTCAACACTAACATCTAATTCACAACTT
1 CATTATAAATTATTTCACAACCTTTGATATTCTGAATTTCAACACTAACATCTAATTCACAACTT
*
8461132 TTTTACAATTAGGTCCTA
66 TTTCACAATTAGGTCCTA
8461150 AATACCATTT
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 82 1.00
ACGTcount: A:0.35, C:0.21, G:0.05, T:0.39
Consensus pattern (83 bp):
CATTATAAATTATTTCACAACCTTTGATATTCTGAATTTCAACACTAACATCTAATTCACAACTT
TTTCACAATTAGGTCCTA
Found at i:8463090 original size:30 final size:30
Alignment explanation
Indices: 8463055--8463134 Score: 92
Period size: 30 Copynumber: 2.7 Consensus size: 30
8463045 CAAGAAAACT
*
8463055 GAATAAAGAAATCCAAGATAGAGAAACCCA
1 GAATAAAGAAATCCAAGATAAAGAAACCCA
* *
8463085 GAATAAAGAAATCC-AGAATAAAGAGATCCA
1 GAATAAAGAAATCCAAG-ATAAAGAAACCCA
*
8463115 GGATAAAGAAA-CCTAAGATA
1 GAATAAAGAAATCC-AAGATA
8463135 CGATACTATG
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
29 4 0.09
30 37 0.86
31 2 0.05
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.12
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAAACCCA
Found at i:8463094 original size:15 final size:15
Alignment explanation
Indices: 8463055--8463125 Score: 90
Period size: 15 Copynumber: 4.7 Consensus size: 15
8463045 CAAGAAAACT
8463055 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
* *
8463070 -AGATAGAGAAACCCA
1 GA-ATAAAGAAATCCA
8463085 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
8463100 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
8463115 GGATAAAGAAA
1 GAATAAAGAAA
8463126 CCTAAGATAC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
14 1 0.02
15 45 0.96
16 1 0.02
ACGTcount: A:0.58, C:0.13, G:0.18, T:0.11
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:8463134 original size:15 final size:14
Alignment explanation
Indices: 8463057--8463134 Score: 59
Period size: 15 Copynumber: 5.2 Consensus size: 14
8463047 AGAAAACTGA
8463057 ATAAAGAAATCCAAG
1 ATAAAGAAA-CCAAG
* *
8463072 ATAGAGAAACCCAG
1 ATAAAGAAACCAAG
8463086 AATAAAGAAATCC-AG
1 -ATAAAGAAA-CCAAG
* *
8463101 AATAAAGAGATCCAGG
1 -ATAAAGA-AACCAAG
8463117 ATAAAGAAACCTAAG
1 ATAAAGAAACC-AAG
8463132 ATA
1 ATA
8463135 CGATACTATG
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
14 7 0.14
15 40 0.78
16 4 0.08
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.13
Consensus pattern (14 bp):
ATAAAGAAACCAAG
Found at i:8467978 original size:62 final size:62
Alignment explanation
Indices: 8467852--8467978 Score: 166
Period size: 62 Copynumber: 2.1 Consensus size: 62
8467842 GTAGATTTTG
* ****
8467852 AAAAACAGAAATTAAAAGGCTCAAGTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAA
1 AAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAAA
* * * *
8467914 AAAAATAGAAATTAAAAGGTTCAACTCACCTCTTGCAATATGAGTTGA-TTTTTGAAAAACA
1 AAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAAA
8467975 AAAA
1 AAAA
8467979 TTGAAAACAG
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
61 12 0.21
62 44 0.79
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.29
Consensus pattern (62 bp):
AAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAAA
Found at i:8467984 original size:14 final size:14
Alignment explanation
Indices: 8467965--8467998 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
8467955 GAGTTGATTT
8467965 TTGAAAAACAAAAA
1 TTGAAAAACAAAAA
*
8467979 TTG-AAAACAGAAA
1 TTGAAAAACAAAAA
8467992 TTGAAAA
1 TTGAAAA
8467999 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.65, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
TTGAAAAACAAAAA
Found at i:8468204 original size:54 final size:53
Alignment explanation
Indices: 8468122--8468225 Score: 174
Period size: 54 Copynumber: 1.9 Consensus size: 53
8468112 GACCCGAGGC
8468122 TCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
1 TCAACTCACCTCTCGCAATATAAGTTGATTTTTG-AAAACAGAAATTAAAAGGT
*
8468176 TCAACTCACCTCTCGCAATATGAA-TTGATTTTTGAAAACATAAATTAAAA
1 TCAACTCACCTCTCGCAATAT-AAGTTGATTTTTGAAAACAGAAATTAAAA
8468226 CAGAAATTGG
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
53 15 0.31
54 31 0.65
55 2 0.04
ACGTcount: A:0.41, C:0.17, G:0.11, T:0.31
Consensus pattern (53 bp):
TCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAACAGAAATTAAAAGGT
Found at i:8468319 original size:153 final size:155
Alignment explanation
Indices: 8468020--8468312 Score: 398
Period size: 153 Copynumber: 1.9 Consensus size: 155
8468010 GCCCCGAGGC
* * *
8468020 TCAACTCACCTCTCGCAATATGAGTAGATTTTTGAAAAATATAAATTAAAAACAGAATTTGAAAA
1 TCAACTCACCTCTCGCAATATGAATAGATTTTTGAAAAACATAAATTAAAAACAGAATTGGAAAA
* * *
8468085 ATAGAATCTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGA
66 ATAAAATCTCAAAATACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGA
8468150 TTTTTGAAAAACAGAAATTAAAAGGT
130 TTTTTGAAAAACAGAAATTAAAAGGT
*
8468176 TCAACTCACCTCTCGCAATATGAATTGATTTTTG-AAAACATAAATT-AAAACAGAAATTGGAAG
1 TCAACTCACCTCTCGCAATATGAATAGATTTTTGAAAAACATAAATTAAAAACAG-AATTGGAA-
* * * * * *
8468239 AACA-AAAAT-TCAAAATACTTCAGC-GTGTCCTGAGGCTCAACTCATCTTTCGCAATATGAGTT
64 AA-ATAAAATCTCAAAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATAAGTT
8468301 GATTTTTGAAAA
128 GATTTTTGAAAA
8468313 GTAGAAACAG
Statistics
Matches: 121, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
153 45 0.37
154 7 0.06
155 30 0.25
156 38 0.31
157 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.28
Consensus pattern (155 bp):
TCAACTCACCTCTCGCAATATGAATAGATTTTTGAAAAACATAAATTAAAAACAGAATTGGAAAA
ATAAAATCTCAAAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGAT
TTTTGAAAAACAGAAATTAAAAGGT
Found at i:8468375 original size:79 final size:79
Alignment explanation
Indices: 8468239--8468391 Score: 243
Period size: 79 Copynumber: 1.9 Consensus size: 79
8468229 AAATTGGAAG
* * *
8468239 AACAAAAATTCAAAATACTTCAGCGTGTCCTGAGGCTCAACTCATCTTTCGCAATATGAGTTGAT
1 AACAAAAATTCAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
8468304 TTTTGAAAAGTAGA
66 TTTTGAAAAGTAGA
* * * *
8468318 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAAAAATTCAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
8468383 TTTTGAAAA
66 TTTTGAAAA
8468392 CATGAATTAA
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
79 67 1.00
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (79 bp):
AACAAAAATTCAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGAAAAGTAGA
Found at i:8468422 original size:15 final size:15
Alignment explanation
Indices: 8468402--8468430 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8468392 CATGAATTAA
8468402 AACAGAAATTGAAAG
1 AACAGAAATTGAAAG
8468417 AACAGAAATTGAAA
1 AACAGAAATTGAAA
8468431 ATACTTCAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.07, G:0.17, T:0.14
Consensus pattern (15 bp):
AACAGAAATTGAAAG
Found at i:8468489 original size:99 final size:99
Alignment explanation
Indices: 8468318--8468688 Score: 715
Period size: 99 Copynumber: 3.7 Consensus size: 99
8468308 GAAAAGTAGA
* * *
8468318 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACTTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
8468383 TTTTGAAAACATGAATTAAAACAGAAATTGAAAG
66 TTTTGAAAACATGAATTAAAACAGAAATTGAAAG
8468417 AACAGAAATTGAAAATACTTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACTTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
8468482 TTTTGAAAACATGAATTAAAACAGAAATTGAAAG
66 TTTTGAAAACATGAATTAAAACAGAAATTGAAAG
8468516 AACAGAAATTGAAAATACTTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACTTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
8468581 TTTTGAAAACATGAATTAAAACAGAAATTGAAAG
66 TTTTGAAAACATGAATTAAAACAGAAATTGAAAG
8468615 AACAGAAATTGAAAATACTTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACTTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
8468680 TTTTGAAAA
66 TTTTGAAAA
8468689 GCAGAAACAA
Statistics
Matches: 269, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
99 269 1.00
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (99 bp):
AACAGAAATTGAAAATACTTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGAAAACATGAATTAAAACAGAAATTGAAAG
Found at i:8468521 original size:15 final size:15
Alignment explanation
Indices: 8468501--8468529 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8468491 CATGAATTAA
8468501 AACAGAAATTGAAAG
1 AACAGAAATTGAAAG
8468516 AACAGAAATTGAAA
1 AACAGAAATTGAAA
8468530 ATACTTCAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.07, G:0.17, T:0.14
Consensus pattern (15 bp):
AACAGAAATTGAAAG
Found at i:8468620 original size:15 final size:15
Alignment explanation
Indices: 8468600--8468628 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8468590 CATGAATTAA
8468600 AACAGAAATTGAAAG
1 AACAGAAATTGAAAG
8468615 AACAGAAATTGAAA
1 AACAGAAATTGAAA
8468629 ATACTTCAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.07, G:0.17, T:0.14
Consensus pattern (15 bp):
AACAGAAATTGAAAG
Found at i:8468751 original size:79 final size:79
Alignment explanation
Indices: 8468615--8468842 Score: 297
Period size: 74 Copynumber: 2.9 Consensus size: 79
8468605 AAATTGAAAG
* * *
8468615 AACAGAAATTGAAAA-TACTTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AACAAAAATT-AAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
8468679 TTTTTGAAAAGCAGA
65 TTTTTGAAAAGCAGA
8468694 AACAAAAATTAAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAAAAATTAAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
***
8468759 TTTT-----TTTGA
66 TTTTGAAAAGCAGA
* * * * * *
8468768 AAGATAAATTGAAATTACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAAGATGAGTTGAT
1 AACAAAAATTAAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
8468833 TTTTGAAAAG
66 TTTTGAAAAG
8468843 TATAAATTAA
Statistics
Matches: 130, Mismatches: 13, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
74 65 0.50
78 4 0.03
79 61 0.47
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.28
Consensus pattern (79 bp):
AACAAAAATTAAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGAAAAGCAGA
Found at i:8471221 original size:89 final size:89
Alignment explanation
Indices: 8471070--8471247 Score: 356
Period size: 89 Copynumber: 2.0 Consensus size: 89
8471060 TTTAATTCTT
8471070 GATGTATTCTAAGATATCATAAAACTATGGCCGTCCCTCTGGCTCTTTTTCAATGCTGAAACAAT
1 GATGTATTCTAAGATATCATAAAACTATGGCCGTCCCTCTGGCTCTTTTTCAATGCTGAAACAAT
8471135 GTGCTGGGACTTCATATATGCTTA
66 GTGCTGGGACTTCATATATGCTTA
8471159 GATGTATTCTAAGATATCATAAAACTATGGCCGTCCCTCTGGCTCTTTTTCAATGCTGAAACAAT
1 GATGTATTCTAAGATATCATAAAACTATGGCCGTCCCTCTGGCTCTTTTTCAATGCTGAAACAAT
8471224 GTGCTGGGACTTCATATATGCTTA
66 GTGCTGGGACTTCATATATGCTTA
8471248 TTTGAAGAGG
Statistics
Matches: 89, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 89 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (89 bp):
GATGTATTCTAAGATATCATAAAACTATGGCCGTCCCTCTGGCTCTTTTTCAATGCTGAAACAAT
GTGCTGGGACTTCATATATGCTTA
Found at i:8480792 original size:20 final size:20
Alignment explanation
Indices: 8480767--8480807 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
8480757 ATATTCACCC
8480767 AACATAGCGATGAAATCGAT
1 AACATAGCGATGAAATCGAT
* * *
8480787 AACATAGTGTTTAAATCGAT
1 AACATAGCGATGAAATCGAT
8480807 A
1 A
8480808 CGTTGCCTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.12, G:0.17, T:0.27
Consensus pattern (20 bp):
AACATAGCGATGAAATCGAT
Found at i:8481143 original size:25 final size:25
Alignment explanation
Indices: 8481090--8481144 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
8481080 ATAAATAGTA
*
8481090 ATAGTGTTAGAAATATATACTATAT
1 ATAGTGTTAGAAATATATACTATAG
* *
8481115 ATAGTGTTTGAAGTATATAC-ATAAG
1 ATAGTGTTAGAAATATATACTAT-AG
8481140 ATAGT
1 ATAGT
8481145 AAAAATATAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 2 0.08
25 24 0.92
ACGTcount: A:0.42, C:0.04, G:0.16, T:0.38
Consensus pattern (25 bp):
ATAGTGTTAGAAATATATACTATAG
Found at i:8481626 original size:9 final size:9
Alignment explanation
Indices: 8481607--8481678 Score: 51
Period size: 9 Copynumber: 8.0 Consensus size: 9
8481597 TAATAATATT
8481607 AAAAT-ATA
1 AAAATAATA
8481615 AAAATAATA
1 AAAATAATA
8481624 AAAATAAT-
1 AAAATAATA
*
8481632 AAAGTAATTA
1 AAAATAA-TA
*
8481642 AAAATCATA
1 AAAATAATA
* *
8481651 CTATATAAT-
1 -AAAATAATA
*
8481660 AAAGTAATA
1 AAAATAATA
8481669 AAAGATAATA
1 AAA-ATAATA
8481679 CTATATATAC
Statistics
Matches: 48, Mismatches: 10, Indels: 10
0.71 0.15 0.15
Matches are distributed among these distances:
8 16 0.33
9 17 0.35
10 15 0.31
ACGTcount: A:0.67, C:0.03, G:0.04, T:0.26
Consensus pattern (9 bp):
AAAATAATA
Found at i:8481639 original size:17 final size:16
Alignment explanation
Indices: 8481604--8481646 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
8481594 TGGTAATAAT
8481604 ATTAAAATATAAAAATA
1 ATTAAAA-ATAAAAATA
8481621 A-TAAAAATAATAAAGTA
1 ATTAAAAATAA-AAA-TA
8481638 ATTAAAAAT
1 ATTAAAAAT
8481647 CATACTATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
15 4 0.17
16 8 0.35
17 4 0.17
18 7 0.30
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (16 bp):
ATTAAAAATAAAAATA
Found at i:8481645 original size:28 final size:27
Alignment explanation
Indices: 8481612--8481679 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 27
8481602 ATATTAAAAT
8481612 ATAAAAATAATA-AAAATAATAAAGTA
1 ATAAAAATAATACAAAATAATAAAGTA
* * *
8481638 ATTAAAAATCATACTATATAATAAAGTA
1 A-TAAAAATAATACAAAATAATAAAGTA
8481666 ATAAAAGATAATAC
1 ATAAAA-ATAATAC
8481680 TATATATACA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
26 1 0.03
27 15 0.43
28 19 0.54
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.26
Consensus pattern (27 bp):
ATAAAAATAATACAAAATAATAAAGTA
Found at i:8481930 original size:28 final size:28
Alignment explanation
Indices: 8481892--8481948 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 28
8481882 AAAAAAAAAA
*
8481892 AATAAAGTAATTAAAA-ATCATACTATAT
1 AATAAAGTAA-TAAAAGATAATACTATAT
8481920 AATAAAGTAATAAAAGATAATACTATAT
1 AATAAAGTAATAAAAGATAATACTATAT
8481948 A
1 A
8481949 TACATGTACG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (28 bp):
AATAAAGTAATAAAAGATAATACTATAT
Found at i:8482100 original size:265 final size:263
Alignment explanation
Indices: 8481623--8482150 Score: 1020
Period size: 265 Copynumber: 2.0 Consensus size: 263
8481613 TAAAAATAAT
*
8481623 AAAAATAATAAAGTAATTAAAAATCATACTATATAATAAAGTAATAAAAGATAATACTATATATA
1 AAAAAAAATAAAGTAATTAAAAATCATACTATATAATAAAGTAATAAAAGATAATACTATATATA
8481688 CATGTACGTAATATATGTATATTAGAAATAATAATAGGAGTTAATAATAATATAAATATCATATA
66 CATGTACGTAATATATGTATATTAGAAATAATAATAGGAGTTAATAATAATATAAATATCATATA
*
8481753 CATAAAAATAATAATAATAACAATAGATAACGTAATAATAAAAAATGAATGACAAAATTAATTAT
131 CATAAAAATAATAATAACAACAATAGATAACGTAATAATAAAAAATGAATGACAAAATTAATTAT
8481818 TAAAATGTCAAAATGATAGAAAGGATTGAATCGAAAACAAAATAGAAAGCTCGGGATAGATTTTA
196 TAAAATGTCAAAATGATAGAAAGGATTGAATCGAAAACAAAATAGAAAGCTCGGGATAGATTTTA
8481883 AAA
261 AAA
8481886 AAAAAAAATAAAGTAATTAAAAATCATACTATATAATAAAGTAATAAAAGATAATACTATATATA
1 AAAAAAAATAAAGTAATTAAAAATCATACTATATAATAAAGTAATAAAAGATAATACTATATATA
8481951 CATGTACGTAATATATGTATATTAGAAATAATAATAGGAGTTATAATAATAATATAAATATCATA
66 CATGTACGTAATATATGTATATTAGAAATAATAATAGGAG-T-TAATAATAATATAAATATCATA
8482016 TACATAAAAATAATAATAACAACAATAGATAACGTAATAATAAAAAATGAATGACAAAATTAATT
129 TACATAAAAATAATAATAACAACAATAGATAACGTAATAATAAAAAATGAATGACAAAATTAATT
8482081 ATTAAAATGTCAAAATGATAGAAAGGATTGAATCGAAAACAAAATAGAAAGCTCGGGATAGATTT
194 ATTAAAATGTCAAAATGATAGAAAGGATTGAATCGAAAACAAAATAGAAAGCTCGGGATAGATTT
8482146 TAAAA
259 TAAAA
8482151 TATAAAACAA
Statistics
Matches: 261, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
263 104 0.40
264 1 0.00
265 156 0.60
ACGTcount: A:0.56, C:0.06, G:0.10, T:0.28
Consensus pattern (263 bp):
AAAAAAAATAAAGTAATTAAAAATCATACTATATAATAAAGTAATAAAAGATAATACTATATATA
CATGTACGTAATATATGTATATTAGAAATAATAATAGGAGTTAATAATAATATAAATATCATATA
CATAAAAATAATAATAACAACAATAGATAACGTAATAATAAAAAATGAATGACAAAATTAATTAT
TAAAATGTCAAAATGATAGAAAGGATTGAATCGAAAACAAAATAGAAAGCTCGGGATAGATTTTA
AAA
Found at i:8484115 original size:14 final size:15
Alignment explanation
Indices: 8484085--8484117 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
8484075 CCTTAATTAA
8484085 AATTTATTTTAACTT
1 AATTTATTTTAACTT
*
8484100 AATTTA-TTTCACTT
1 AATTTATTTTAACTT
8484114 AATT
1 AATT
8484118 AATACTAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (15 bp):
AATTTATTTTAACTT
Found at i:8490599 original size:18 final size:18
Alignment explanation
Indices: 8490576--8490623 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
8490566 GTTAGAATTT
*
8490576 TTAAAAATTGTAAAAAAA
1 TTAAAAATTATAAAAAAA
* *
8490594 TTAAAAAATATATAAAAA
1 TTAAAAATTATAAAAAAA
8490612 TTATAAAATTAT
1 TTA-AAAATTAT
8490624 GTAACAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 18 0.72
19 7 0.28
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (18 bp):
TTAAAAATTATAAAAAAA
Found at i:8504348 original size:16 final size:16
Alignment explanation
Indices: 8504319--8504361 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
8504309 TTCACTTATT
*
8504319 ATTAGATAATTAAATTTA
1 ATTA-ATAAATAAA-TTA
8504337 ATT-ATAAATAAATTA
1 ATTAATAAATAAATTA
8504352 ATTAATAAAT
1 ATTAATAAAT
8504362 TTTGATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 6 0.26
16 14 0.61
18 3 0.13
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (16 bp):
ATTAATAAATAAATTA
Found at i:8508076 original size:19 final size:19
Alignment explanation
Indices: 8508052--8508089 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
8508042 TAAATGAGTA
8508052 GAAGAATATAGTTTAGATT
1 GAAGAATATAGTTTAGATT
8508071 GAAGAATATAGTTTAGATT
1 GAAGAATATAGTTTAGATT
8508090 TAAGTTGATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.37
Consensus pattern (19 bp):
GAAGAATATAGTTTAGATT
Found at i:8513595 original size:19 final size:20
Alignment explanation
Indices: 8513562--8513600 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
8513552 TTTATTTATA
* *
8513562 AAATTATTATTTTAATAAAT
1 AAATTATTATATTAAAAAAT
8513582 AAATT-TTATATTAAAAAAT
1 AAATTATTATATTAAAAAAT
8513601 GAGTATTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AAATTATTATATTAAAAAAT
Found at i:8515405 original size:33 final size:33
Alignment explanation
Indices: 8515365--8515434 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
8515355 AAAGAAAAGT
8515365 TTTTCTTACATGTCCTTTTCATTTGGTCTTGTC
1 TTTTCTTACATGTCCTTTTCATTTGGTCTTGTC
8515398 TTTTCTTACATGTCCTTTTCATTTGGTCTTGTC
1 TTTTCTTACATGTCCTTTTCATTTGGTCTTGTC
8515431 TTTT
1 TTTT
8515435 TGTTTAGAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.09, C:0.20, G:0.11, T:0.60
Consensus pattern (33 bp):
TTTTCTTACATGTCCTTTTCATTTGGTCTTGTC
Found at i:8515435 original size:19 final size:19
Alignment explanation
Indices: 8515375--8515434 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 19
8515365 TTTTCTTACA
8515375 TGTCCTTTTCATTTGGTCT
1 TGTCCTTTTCATTTGGTCT
* *
8515394 TGT-CTTTTC--TT--ACA
1 TGTCCTTTTCATTTGGTCT
8515408 TGTCCTTTTCATTTGGTCT
1 TGTCCTTTTCATTTGGTCT
8515427 TGT-CTTTT
1 TGTCCTTTT
8515435 TGTTTAGAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 11
0.68 0.09 0.23
Matches are distributed among these distances:
14 4 0.12
15 6 0.19
16 2 0.06
17 2 0.06
18 11 0.34
19 7 0.22
ACGTcount: A:0.07, C:0.20, G:0.13, T:0.60
Consensus pattern (19 bp):
TGTCCTTTTCATTTGGTCT
Found at i:8516888 original size:51 final size:51
Alignment explanation
Indices: 8516812--8516915 Score: 172
Period size: 51 Copynumber: 2.0 Consensus size: 51
8516802 GCCATCTATT
* *
8516812 GGTGTGTCTACTTGTGTGGATGTTGGGGTTGAAATGGAGAATGGGTTGTTG
1 GGTGTGTCTACTTGTGGGGATGTTGGGATTGAAATGGAGAATGGGTTGTTG
**
8516863 GGTGTGTCTACTTGTGGGGATGTTGGGATTGGGATGGAGAATGGGTTGTTG
1 GGTGTGTCTACTTGTGGGGATGTTGGGATTGAAATGGAGAATGGGTTGTTG
8516914 GG
1 GG
8516916 ATTTCTAGAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.14, C:0.04, G:0.46, T:0.36
Consensus pattern (51 bp):
GGTGTGTCTACTTGTGGGGATGTTGGGATTGAAATGGAGAATGGGTTGTTG
Found at i:8522552 original size:18 final size:18
Alignment explanation
Indices: 8522529--8522564 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
8522519 ACAACGTTAA
8522529 AGAACCCTAGAAAATTTT
1 AGAACCCTAGAAAATTTT
*
8522547 AGAACCCTAGATAATTTT
1 AGAACCCTAGAAAATTTT
8522565 TTTTCTTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.31
Consensus pattern (18 bp):
AGAACCCTAGAAAATTTT
Found at i:8522945 original size:23 final size:19
Alignment explanation
Indices: 8522896--8522932 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8522886 CCCTGTTTTA
*
8522896 CCCTCTGCCTCTTCTGTTC
1 CCCTTTGCCTCTTCTGTTC
8522915 CCCTTTGCCTCTTCTGTT
1 CCCTTTGCCTCTTCTGTT
8522933 TCGCCCGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.00, C:0.43, G:0.11, T:0.46
Consensus pattern (19 bp):
CCCTTTGCCTCTTCTGTTC
Found at i:8522974 original size:15 final size:15
Alignment explanation
Indices: 8522954--8523015 Score: 65
Period size: 15 Copynumber: 4.1 Consensus size: 15
8522944 GCTCCCTCCG
* *
8522954 TTTCTTTTCTTTTCT
1 TTTCTTTGCTTTGCT
8522969 TTTCTTTGCTTTGCT
1 TTTCTTTGCTTTGCT
8522984 TTCTCCTTTGCTTT-C-
1 TT-T-CTTTGCTTTGCT
*
8522999 TTCCTTTGCTTTGCT
1 TTTCTTTGCTTTGCT
8523014 TT
1 TT
8523016 CTCCAGTCGA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
13 9 0.22
14 1 0.03
15 19 0.47
16 2 0.05
17 9 0.22
ACGTcount: A:0.00, C:0.24, G:0.08, T:0.68
Consensus pattern (15 bp):
TTTCTTTGCTTTGCT
Found at i:8522994 original size:12 final size:13
Alignment explanation
Indices: 8522977--8523010 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
8522967 CTTTTCTTTG
8522977 CTTTGCTTTC-TC
1 CTTTGCTTTCTTC
8522989 CTTTGCTTTCTTC
1 CTTTGCTTTCTTC
8523002 CTTTGCTTT
1 CTTTGCTTT
8523011 GCTTTCTCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.00, C:0.29, G:0.09, T:0.62
Consensus pattern (13 bp):
CTTTGCTTTCTTC
Found at i:8523035 original size:31 final size:30
Alignment explanation
Indices: 8522972--8523041 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
8522962 CTTTTCTTTT
* * *
8522972 CTTTGCTTTGCTTTCTCCTTTGCTTTCTTC
1 CTTTGCTTTGCTTTCTCCGTCGCTATCTTC
8523002 CTTTGCTTTGCTTTCTCCAGTCGAC-ATCTTC
1 CTTTGCTTTGCTTTCTCC-GTCG-CTATCTTC
8523033 CTTTGCTTT
1 CTTTGCTTT
8523042 CTCCAGTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
30 18 0.51
31 16 0.46
32 1 0.03
ACGTcount: A:0.04, C:0.30, G:0.11, T:0.54
Consensus pattern (30 bp):
CTTTGCTTTGCTTTCTCCGTCGCTATCTTC
Found at i:8525351 original size:18 final size:18
Alignment explanation
Indices: 8525305--8525352 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
8525295 TATAAGAATA
*
8525305 TTAATTATTA-ATA-ATT
1 TTAATTATAATATATATT
8525321 TT-ATTA-AATTATATATT
1 TTAATTATAA-TATATATT
8525338 TTAATTATAATATAT
1 TTAATTATAATATAT
8525353 TTAATAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
14 1 0.04
15 4 0.15
16 5 0.19
17 5 0.19
18 9 0.35
19 2 0.08
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TTAATTATAATATATATT
Found at i:8525357 original size:15 final size:15
Alignment explanation
Indices: 8525322--8525373 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
8525312 TTAATAATTT
*
8525322 TATTAAATTAT-ATA
1 TATTTAATTATAATA
8525336 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
8525350 TATTTAATAATAAT-
1 TATTTAATTATAATA
8525364 TATGTTAATT
1 TAT-TTAATT
8525374 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:8525431 original size:66 final size:62
Alignment explanation
Indices: 8525374--8525564 Score: 186
Period size: 61 Copynumber: 3.2 Consensus size: 62
8525364 TATGTTAATT
8525374 TATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAA
1 TATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAA
* * * * * * * *
8525436 GA-ATTTTATTA-AATTATATATT-TTAATT-A-T-AATAT-ATTTAATAATAATT-A-TGTTAA
1 TATATTTTA-TAGTATCATATATTATGATTTGAGTAAAT-TCATATAAGAAT-ATTAATTATTAA
8525492 TTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAA
1 --TATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAA
*
8525556 GA-ATTTTAT
1 TATATTTTAT
8525565 TAAATTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 29
0.68 0.12 0.20
Matches are distributed among these distances:
56 5 0.05
57 12 0.12
58 8 0.08
59 16 0.16
60 8 0.08
61 23 0.23
62 9 0.09
63 12 0.12
64 5 0.05
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (62 bp):
TATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAA
Found at i:8525471 original size:120 final size:120
Alignment explanation
Indices: 8525288--8525609 Score: 619
Period size: 120 Copynumber: 2.7 Consensus size: 120
8525278 ATTGTTTTAT
*
8525288 TAAATT-ATATAAGAATATTAATTATTAATAATTTTATTAAATTATATATTTTAATTATAATATA
1 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
8525352 TTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAG
66 TTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAG
8525407 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
1 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
8525472 TTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAG
66 TTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAG
*
8525527 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATGATATA
1 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
8525592 TTTAATAATAATTATGTT
66 TTTAATAATAATTATGTT
8525610 TAAATATGAT
Statistics
Matches: 200, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
119 6 0.03
120 194 0.97
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.50
Consensus pattern (120 bp):
TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
TTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAG
Found at i:8525477 original size:15 final size:15
Alignment explanation
Indices: 8525442--8525493 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
8525432 TTAAGAATTT
*
8525442 TATTAAATTAT-ATA
1 TATTTAATTATAATA
8525456 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
8525470 TATTTAATAATAAT-
1 TATTTAATTATAATA
8525484 TATGTTAATT
1 TAT-TTAATT
8525494 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:8539857 original size:31 final size:31
Alignment explanation
Indices: 8539817--8539882 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
8539807 CCACACAATG
* **
8539817 ATCATTAAACCATTTGAAAGATTTTATTTAA
1 ATCACTAAACCATTCAAAAGATTTTATTTAA
* *
8539848 ATCACTAAACTATTCAAAAGTTTTTATTTAA
1 ATCACTAAACCATTCAAAAGATTTTATTTAA
8539879 ATCA
1 ATCA
8539883 ATTGGTTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.42, C:0.12, G:0.05, T:0.41
Consensus pattern (31 bp):
ATCACTAAACCATTCAAAAGATTTTATTTAA
Found at i:8543985 original size:31 final size:31
Alignment explanation
Indices: 8543932--8543994 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
8543922 AAATTATTAT
*
8543932 TGAACTATTTGAAAATTTTTATTTAAGTCAC
1 TGAACTATTCGAAAATTTTTATTTAAGTCAC
* *
8543963 TGAATTATTCGAAATTTTTTATTTAAGTCAC
1 TGAACTATTCGAAAATTTTTATTTAAGTCAC
8543994 T
1 T
8543995 ACACTGAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.48
Consensus pattern (31 bp):
TGAACTATTCGAAAATTTTTATTTAAGTCAC
Found at i:8545600 original size:20 final size:20
Alignment explanation
Indices: 8545571--8545608 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
8545561 TAAATATATT
8545571 TTTATAAATTATTTAATAAA
1 TTTATAAATTATTTAATAAA
*
8545591 TTTATTAATTATTTAATA
1 TTTATAAATTATTTAATA
8545609 TTAAAACTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TTTATAAATTATTTAATAAA
Found at i:8546455 original size:18 final size:18
Alignment explanation
Indices: 8546414--8546452 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
8546404 AAAATATAAA
*
8546414 TTAATATTTTTATATTTT
1 TTAATAATTTTATATTTT
8546432 TTAATAATTTTA-ATTTT
1 TTAATAATTTTATATTTT
8546449 TTAA
1 TTAA
8546453 ATATATATCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTAATAATTTTATATTTT
Found at i:8556845 original size:22 final size:22
Alignment explanation
Indices: 8556767--8556845 Score: 63
Period size: 22 Copynumber: 3.6 Consensus size: 22
8556757 ATATCCAAAC
* *
8556767 AATAACAATAAAATAGTAGCAA
1 AATAATAATAAAATAGTAACAA
* *
8556789 CATAATAGTAAAAT-GTTAACAA
1 AATAATAATAAAATAG-TAACAA
* * *
8556811 AATAGA-GAGAAAATAGCAACAA
1 AATA-ATAATAAAATAGTAACAA
8556833 AATAATAATAAAA
1 AATAATAATAAAA
8556846 AAACAGTATT
Statistics
Matches: 42, Mismatches: 11, Indels: 8
0.69 0.18 0.13
Matches are distributed among these distances:
21 2 0.05
22 38 0.90
23 2 0.05
ACGTcount: A:0.63, C:0.08, G:0.10, T:0.19
Consensus pattern (22 bp):
AATAATAATAAAATAGTAACAA
Found at i:8559188 original size:82 final size:81
Alignment explanation
Indices: 8559002--8559189 Score: 261
Period size: 82 Copynumber: 2.3 Consensus size: 81
8558992 TTACTTCATG
* * * *
8559002 ATACCTTTAATTTAAATATTTTTATAGTTTTTTCTTAAAATATTTACTTTAAAAAATATATAAAA
1 ATACCTTTAATTTTAATATTTTTATAGTTTTTCCTTAAAATATTTAATTTAAAAAACATATAAAA
8559067 TTATTAAAACACATAA
66 TTATTAAAACACATAA
*
8559083 ATACC-TTAATTTTAAAACATTTTTATAGTTTTTCCTTAAAATATTTAATTTAAAAAACATATAA
1 ATACCTTTAATTTT--AATATTTTTATAGTTTTTCCTTAAAATATTTAATTTAAAAAACATATAA
* *
8559147 AATTATTAAAAGACATTA
64 AATTATTAAAACACATAA
* *
8559165 ATACCTTTAAATTTTTATTTTTTTA
1 ATACCTTT-AATTTTAATATTTTTA
8559190 AAATGAATCT
Statistics
Matches: 93, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
80 7 0.08
81 5 0.05
82 73 0.78
83 2 0.02
84 6 0.06
ACGTcount: A:0.44, C:0.08, G:0.02, T:0.47
Consensus pattern (81 bp):
ATACCTTTAATTTTAATATTTTTATAGTTTTTCCTTAAAATATTTAATTTAAAAAACATATAAAA
TTATTAAAACACATAA
Found at i:8559440 original size:77 final size:77
Alignment explanation
Indices: 8559313--8559463 Score: 293
Period size: 77 Copynumber: 2.0 Consensus size: 77
8559303 TGAATTTGTT
*
8559313 AATTTTTGTCGTGACCAAACAGTAACAATTAAATCTGTTAAGCTAAATTCTGCTATTAGTCCTCT
1 AATTTTAGTCGTGACCAAACAGTAACAATTAAATCTGTTAAGCTAAATTCTGCTATTAGTCCTCT
8559378 ATTATGCGTGTC
66 ATTATGCGTGTC
8559390 AATTTTAGTCGTGACCAAACAGTAACAATTAAATCTGTTAAGCTAAATTCTGCTATTAGTCCTCT
1 AATTTTAGTCGTGACCAAACAGTAACAATTAAATCTGTTAAGCTAAATTCTGCTATTAGTCCTCT
8559455 ATTATGCGT
66 ATTATGCGT
8559464 AAATATGTAG
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 73 1.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (77 bp):
AATTTTAGTCGTGACCAAACAGTAACAATTAAATCTGTTAAGCTAAATTCTGCTATTAGTCCTCT
ATTATGCGTGTC
Found at i:8562655 original size:18 final size:17
Alignment explanation
Indices: 8562627--8562661 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8562617 ATTTTTAAGA
*
8562627 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8562644 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8562662 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8562915 original size:16 final size:16
Alignment explanation
Indices: 8562894--8562932 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
8562884 TTGATTTGCT
*
8562894 ATTACACAGCTTTTCC
1 ATTACACAGCTATTCC
**
8562910 ATTACACCTCTATTCC
1 ATTACACAGCTATTCC
8562926 ATTACAC
1 ATTACAC
8562933 CTCTAATCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTACACAGCTATTCC
Found at i:8562933 original size:16 final size:16
Alignment explanation
Indices: 8562907--8562979 Score: 110
Period size: 16 Copynumber: 4.6 Consensus size: 16
8562897 ACACAGCTTT
* *
8562907 TCCATTACACCTCTAT
1 TCCAATACACCTCTAA
*
8562923 TCCATTACACCTCTAA
1 TCCAATACACCTCTAA
8562939 TCCAATACACCTCTAA
1 TCCAATACACCTCTAA
*
8562955 TCCAATACACCTTTAA
1 TCCAATACACCTCTAA
8562971 TCCAATACA
1 TCCAATACA
8562980 GCGAACATGA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 54 1.00
ACGTcount: A:0.34, C:0.36, G:0.00, T:0.30
Consensus pattern (16 bp):
TCCAATACACCTCTAA
Found at i:8563491 original size:18 final size:18
Alignment explanation
Indices: 8563465--8563521 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
8563455 TTAAAATTCA
8563465 AAATATTTATATAATTTTC
1 AAAT-TTTATATAATTTTC
* *
8563484 AAATTTTATAT-TTTTTA
1 AAATTTTATATAATTTTC
** *
8563501 AAAAATTATAAAATTTTC
1 AAATTTTATATAATTTTC
8563519 AAA
1 AAA
8563522 AAAAATCTAA
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
17 12 0.40
18 14 0.47
19 4 0.13
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (18 bp):
AAATTTTATATAATTTTC
Found at i:8563798 original size:24 final size:25
Alignment explanation
Indices: 8563765--8563811 Score: 87
Period size: 24 Copynumber: 1.9 Consensus size: 25
8563755 ATCAACTTGA
8563765 TTAACTCGAAATTTTTTACTCAAGC
1 TTAACTCGAAATTTTTTACTCAAGC
8563790 TTAA-TCGAAATTTTTTACTCAA
1 TTAACTCGAAATTTTTTACTCAA
8563812 ACGCTTACCC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (25 bp):
TTAACTCGAAATTTTTTACTCAAGC
Found at i:8564312 original size:16 final size:15
Alignment explanation
Indices: 8564286--8564315 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
8564276 TCCTAGGCAT
8564286 ACAAATACAGATAAC
1 ACAAATACAGATAAC
8564301 ACAAATTACAGATAA
1 ACAAA-TACAGATAA
8564316 AAATATTACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.60, C:0.17, G:0.07, T:0.17
Consensus pattern (15 bp):
ACAAATACAGATAAC
Found at i:8568856 original size:18 final size:18
Alignment explanation
Indices: 8568829--8568864 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8568819 TTCACATGAA
*
8568829 GAAATCTAATAACCATAT
1 GAAATATAATAACCATAT
*
8568847 GAAATATAATAATCATAT
1 GAAATATAATAACCATAT
8568865 TGAAGATAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.06, T:0.31
Consensus pattern (18 bp):
GAAATATAATAACCATAT
Found at i:8581424 original size:18 final size:17
Alignment explanation
Indices: 8581396--8581430 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8581386 NNNNTTAAGA
*
8581396 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8581413 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8581431 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8581684 original size:16 final size:16
Alignment explanation
Indices: 8581663--8581701 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
8581653 TTGATTTGCT
*
8581663 ATTACACAGCTTTTCC
1 ATTACACAGCTATTCC
**
8581679 ATTACACCTCTATTCC
1 ATTACACAGCTATTCC
8581695 ATTACAC
1 ATTACAC
8581702 CTCTAATCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTACACAGCTATTCC
Done.