Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 29 of 144
Found at i:8847595 original size:228 final size:228
Alignment explanation
Indices: 8847183--8847824 Score: 743
Period size: 228 Copynumber: 2.8 Consensus size: 228
8847173 GGAGACGAAG
* * * * *
8847183 AACAAGGTGAAGTGTAGACTCTTTCTGAATGTTATAATCAGCCAAAGTCCTCCCATCTTCCAATT
1 AACAAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCAGCCAAGGTCCTCCCATCTTCCAATT
* * * ** * * * * *
8847248 GTTTGCCGGCAAAGATGAGCCTTTGCTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTTGCC
66 GTTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGTGGGATCCCTTCCTTGTCTTGAATCTTGGCC
* * * * * * * *
8847313 TTAACATTGTCAATGGTATCGGAGCTTTCAACCTCCAAGGTGATTGTTTTGCCGGTCAAAGTCTT
131 TTAACGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTT
8847378 GACAAAAATCTGCAT-CCCTCCACGAA-GCCTCAA
196 GACAAAAATCTGCATGCCC-CCACGAAGGCCT-AA
*
8847411 AACAAGGTGAAGGGTGGATTCCTTT-TGGATATTATAATCAGCCAAGGTCCTCCCATCTTCCAAT
1 AACAAGGTGAAGGGTGGATT-CTTTCTGGATGTTATAATCAGCCAAGGTCCTCCCATCTTCCAAT
* * * *
8847475 TGTTTGCCAGCGAAGATCAAACGCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGAATCTTGGC
65 TGTTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGTGGGATCCCTTCCTTGTCTTGAATCTTGGC
* * * * * *
8847540 CTTAACGTTGTCGATGGTGTCGGAACTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTTT
130 CTTAACGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCT
* * *
8847605 TGACAAAGATTTGCATGCCCCCACGAAGGCGTAA
195 TGACAAAAATCTGCATGCCCCCACGAAGGCCTAA
* * * * ** * * **
8847639 GACGAGGTGGAGGGTGGATTCTTTCTGGATGTTATAATC-GGCAAGGGTCCGACCGTCTTCGAGC
1 AACAAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCAGCCAA-GGTCCTCCCATCTTCCAAT
* * *
8847703 TGTTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGTGGGATCCCTTCCTTGTCTTGGATCTTGGC
65 TGTTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGTGGGATCCCTTCCTTGTCTTGAATCTTGGC
* * *
8847768 CTTGACGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGTGTTATGGTCTTGCCGGT
130 CTTAACGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGGGTGATGGTCTTGCCGGT
8847825 AAGGGTTTTC
Statistics
Matches: 349, Mismatches: 60, Indels: 10
0.83 0.14 0.02
Matches are distributed among these distances:
227 8 0.02
228 331 0.95
229 10 0.03
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.30
Consensus pattern (228 bp):
AACAAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCAGCCAAGGTCCTCCCATCTTCCAATT
GTTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGTGGGATCCCTTCCTTGTCTTGAATCTTGGCC
TTAACGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTT
GACAAAAATCTGCATGCCCCCACGAAGGCCTAA
Found at i:8848233 original size:18 final size:18
Alignment explanation
Indices: 8848210--8848258 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
8848200 AATATAAAAT
8848210 TATTCACGTATACGATAC
1 TATTCACGTATACGATAC
* *
8848228 TATTCACGTATATGGTAC
1 TATTCACGTATACGATAC
*
8848246 TGTTCACGTATAC
1 TATTCACGTATAC
8848259 AGTAGTTGGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (18 bp):
TATTCACGTATACGATAC
Found at i:8875933 original size:4 final size:4
Alignment explanation
Indices: 8875924--8875953 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
8875914 TTTGTTTCTC
*
8875924 ATCT ATCT ATCT ATTT ATCT ATCT ATCT AT
1 ATCT ATCT ATCT ATCT ATCT ATCT ATCT AT
8875954 ATATTGTGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.00, T:0.53
Consensus pattern (4 bp):
ATCT
Found at i:8887235 original size:31 final size:30
Alignment explanation
Indices: 8887195--8887262 Score: 102
Period size: 31 Copynumber: 2.3 Consensus size: 30
8887185 CCTACCCAAG
8887195 TTCT-TTTCTAAGCCTCCATGTTCAGCAGA
1 TTCTGTTTCTAAGCCTCCATGTTCAGCAGA
* *
8887224 TTCTGTNTTCTAAGCCTCCATGTTGAGCAGG
1 TTCTGT-TTCTAAGCCTCCATGTTCAGCAGA
8887255 TTCTGTTT
1 TTCTGTTT
8887263 TAGGTCTTAC
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
29 4 0.11
30 3 0.09
31 28 0.80
ACGTcount: A:0.16, C:0.24, G:0.18, T:0.41
Consensus pattern (30 bp):
TTCTGTTTCTAAGCCTCCATGTTCAGCAGA
Found at i:8895266 original size:19 final size:17
Alignment explanation
Indices: 8895242--8895276 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
8895232 ATTGTTTAGA
8895242 TATTGTATAATTCTTGTTT
1 TATTGT-TAATT-TTGTTT
8895261 TATTGTTAATTTTGTT
1 TATTGTTAATTTTGTT
8895277 ACTATTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 5 0.31
19 6 0.38
ACGTcount: A:0.20, C:0.03, G:0.11, T:0.66
Consensus pattern (17 bp):
TATTGTTAATTTTGTTT
Found at i:8896554 original size:22 final size:21
Alignment explanation
Indices: 8896524--8896569 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
8896514 TTTTTCCCAT
**
8896524 GTTAGGTTTTTCGTTTTTAGG
1 GTTAGGTTTAGCGTTTTTAGG
*
8896545 GTTAGAGTTTAGGGTTTTTAGG
1 GTTAG-GTTTAGCGTTTTTAGG
8896567 GTT
1 GTT
8896570 TTGGAGGAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.13, C:0.02, G:0.33, T:0.52
Consensus pattern (21 bp):
GTTAGGTTTAGCGTTTTTAGG
Found at i:8896774 original size:11 final size:11
Alignment explanation
Indices: 8896760--8896846 Score: 51
Period size: 11 Copynumber: 8.3 Consensus size: 11
8896750 GAGAAATTTA
8896760 AGAGGAAATTG
1 AGAGGAAATTG
*
8896771 AGAGAAAATTG
1 AGAGGAAATTG
**
8896782 AGATTAAA-T-
1 AGAGGAAATTG
* *
8896791 A-TGG-ATTTG
1 AGAGGAAATTG
8896800 AGA-GAAATTTG
1 AGAGGAAA-TTG
*
8896811 -GAAGGAATTTG
1 AG-AGGAAATTG
*
8896822 AGAGCAAATTG
1 AGAGGAAATTG
8896833 AGAGGAAATTG
1 AGAGGAAATTG
8896844 AGA
1 AGA
8896847 AAATAATTGA
Statistics
Matches: 55, Mismatches: 13, Indels: 16
0.65 0.15 0.19
Matches are distributed among these distances:
7 1 0.02
8 1 0.02
9 3 0.05
10 3 0.05
11 43 0.78
12 4 0.07
ACGTcount: A:0.45, C:0.01, G:0.30, T:0.24
Consensus pattern (11 bp):
AGAGGAAATTG
Found at i:8896844 original size:22 final size:22
Alignment explanation
Indices: 8896797--8896850 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
8896787 AAATATGGAT
*
8896797 TTGAGAGAAATTTGGAAGGAAT
1 TTGAGAGAAATTTGGAAGGAAA
8896819 TTGAGAGCAAA-TT-GAGAGGAAA
1 TTGAGAG-AAATTTGGA-AGGAAA
8896841 TTGAGA-AAAT
1 TTGAGAGAAAT
8896851 AATTGAGAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
20 3 0.11
21 2 0.07
22 20 0.71
23 3 0.11
ACGTcount: A:0.44, C:0.02, G:0.30, T:0.24
Consensus pattern (22 bp):
TTGAGAGAAATTTGGAAGGAAA
Found at i:8903557 original size:18 final size:19
Alignment explanation
Indices: 8903534--8903569 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
8903524 ATTTAATTTC
*
8903534 AAAAAAATGT-TACAAAAG
1 AAAAAAAAGTATACAAAAG
8903552 AAAAAAAAGTATACAAAA
1 AAAAAAAAGTATACAAAA
8903570 CTTTCATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.72, C:0.06, G:0.08, T:0.14
Consensus pattern (19 bp):
AAAAAAAAGTATACAAAAG
Found at i:8908230 original size:2 final size:2
Alignment explanation
Indices: 8908225--8908251 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8908215 CATATATACA
8908225 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
8908252 TAGTGACAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:8911147 original size:75 final size:75
Alignment explanation
Indices: 8911065--8911261 Score: 378
Period size: 75 Copynumber: 2.6 Consensus size: 75
8911055 TCAAATTAGT
8911065 TATAAATTTTAAATATTTTTTAAGTTATTAATATTAATTTATTATAATTTGTTGTTAATATTTTA
1 TATAAATTTTAAATATTTTTTAAGTTATTAATATTAATTTATTATAATTTGTTGTTAATATTTTA
8911130 ATATATGAAA
66 ATATATGAAA
8911140 TATAAATTTTAAATATTTTTTAAGTTATTAATATTAATTTATTATAATTTGTTGTTAATATTTTA
1 TATAAATTTTAAATATTTTTTAAGTTATTAATATTAATTTATTATAATTTGTTGTTAATATTTTA
8911205 ATATATGAAA
66 ATATATGAAA
8911215 TATAAATTTTAAATATTTTTTAAGTTATTAATATTAA-TTATTTATAA
1 TATAAATTTTAAATATTTTTTAAGTTATTAATATTAATTTA-TTATAA
8911262 AATTTAATTC
Statistics
Matches: 121, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
74 3 0.02
75 118 0.98
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (75 bp):
TATAAATTTTAAATATTTTTTAAGTTATTAATATTAATTTATTATAATTTGTTGTTAATATTTTA
ATATATGAAA
Found at i:8911148 original size:44 final size:44
Alignment explanation
Indices: 8911094--8911223 Score: 126
Period size: 44 Copynumber: 3.2 Consensus size: 44
8911084 TTAAGTTATT
*
8911094 AATATTAATTTATTATAATTTGTTGTTAATATTTTAATATATGA
1 AATATAAATTTATTATAATTTGTTGTTAATATTTTAATATATGA
*
8911138 AATATAAA-TT-TTA-AATATT-TT-TT-A-A-GTT-AT-TA--A
1 AATATAAATTTATTATAAT-TTGTTGTTAATATTTTAATATATGA
*
8911171 TAT-T-AATTTATTATAATTTGTTGTTAATATTTTAATATATGA
1 AATATAAATTTATTATAATTTGTTGTTAATATTTTAATATATGA
8911213 AATATAAATTT
1 AATATAAATTT
8911224 TAAATATTTT
Statistics
Matches: 66, Mismatches: 5, Indels: 30
0.65 0.05 0.30
Matches are distributed among these distances:
31 2 0.03
32 3 0.05
33 8 0.12
34 5 0.08
35 4 0.06
36 3 0.05
37 3 0.05
38 3 0.05
39 3 0.05
40 4 0.06
41 5 0.08
42 8 0.12
43 3 0.05
44 12 0.18
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (44 bp):
AATATAAATTTATTATAATTTGTTGTTAATATTTTAATATATGA
Found at i:8914303 original size:27 final size:27
Alignment explanation
Indices: 8914267--8914319 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
8914257 AACAGAATAG
* *
8914267 GCAAACGAAAACAGGGGAG-AAAGGAAA
1 GCAAAAGAAAA-AGGGAAGCAAAGGAAA
8914294 GCAAAAGAAAAAGGGAAGCAAAGGAA
1 GCAAAAGAAAAAGGGAAGCAAAGGAA
8914320 GAAAATTTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.58, C:0.09, G:0.32, T:0.00
Consensus pattern (27 bp):
GCAAAAGAAAAAGGGAAGCAAAGGAAA
Found at i:8922812 original size:18 final size:17
Alignment explanation
Indices: 8922780--8922813 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
8922770 AGGATGTTAT
*
8922780 AATTTAAATTTTTTTAA
1 AATTTAAATTATTTTAA
8922797 AATTTCAAATTATTTTA
1 AATTT-AAATTATTTTA
8922814 TTGTAGTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (17 bp):
AATTTAAATTATTTTAA
Found at i:8926658 original size:11 final size:11
Alignment explanation
Indices: 8926629--8926681 Score: 56
Period size: 11 Copynumber: 4.8 Consensus size: 11
8926619 AAACACAACC
8926629 TTATAGAAAAA-
1 TTATA-AAAAAT
8926640 TT-TAAAAAAT
1 TTATAAAAAAT
8926650 TTATAAAAAAT
1 TTATAAAAAAT
* *
8926661 TATTTAAAAAAA
1 T-TATAAAAAAT
8926673 TTATAAAAA
1 TTATAAAAA
8926682 CTGATTAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
9 5 0.14
10 4 0.11
11 18 0.50
12 9 0.25
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (11 bp):
TTATAAAAAAT
Found at i:8926670 original size:13 final size:14
Alignment explanation
Indices: 8926648--8926676 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
8926638 AATTTAAAAA
8926648 ATTTATAAAAAATT
1 ATTTATAAAAAATT
8926662 ATTTA-AAAAAATT
1 ATTTATAAAAAATT
8926675 AT
1 AT
8926677 AAAAACTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
ATTTATAAAAAATT
Found at i:8926933 original size:96 final size:96
Alignment explanation
Indices: 8926769--8926961 Score: 332
Period size: 96 Copynumber: 2.0 Consensus size: 96
8926759 GTGATTAAAC
* * * *
8926769 TTATAACGGGTTTTGAGTATGAGGTTTGAAAAATAATGAGTTTAGTGTTTGGTGGTTTAAGGTTA
1 TTATAACGGGTTCTGAGTATGAGGTTTGAAAAAGAATAAGTTTAGTGTTTGGTAGTTTAAGGTTA
* *
8926834 ATAATAAGTAATGGTTTTGATTAAGGAGTAA
66 ATAACAAGTAATGATTTTGATTAAGGAGTAA
8926865 TTATAACGGGTTCTGAGTATGAGGTTTGAAAAAGAATAAGTTTAGTGTTTGGTAGTTTAAGGTTA
1 TTATAACGGGTTCTGAGTATGAGGTTTGAAAAAGAATAAGTTTAGTGTTTGGTAGTTTAAGGTTA
8926930 ATAACAAGTAATGATTTTGATTAAGGAGTAA
66 ATAACAAGTAATGATTTTGATTAAGGAGTAA
8926961 T
1 T
8926962 GATACGAGAA
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
96 91 1.00
ACGTcount: A:0.34, C:0.02, G:0.26, T:0.38
Consensus pattern (96 bp):
TTATAACGGGTTCTGAGTATGAGGTTTGAAAAAGAATAAGTTTAGTGTTTGGTAGTTTAAGGTTA
ATAACAAGTAATGATTTTGATTAAGGAGTAA
Found at i:8927140 original size:21 final size:23
Alignment explanation
Indices: 8927116--8927162 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
8927106 AAGAAAATCT
8927116 AAAAAAT-TATAT-AAATTATTA
1 AAAAAATGTATATAAAATTATTA
*
8927137 AAAAATTGGTATATAAAATTATTA
1 AAAAAAT-GTATATAAAATTATTA
8927161 AA
1 AA
8927163 TATTATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 6 0.27
23 5 0.23
24 11 0.50
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (23 bp):
AAAAAATGTATATAAAATTATTA
Found at i:8934230 original size:21 final size:20
Alignment explanation
Indices: 8934198--8934238 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
8934188 AAATCATGGA
*
8934198 TAATGTATTTAACTTCTCAG
1 TAATATATTTAACTTCTCAG
*
8934218 TAATATATATTAACTTTTCAG
1 TAATATAT-TTAACTTCTCAG
8934239 AGTGCCCTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.34, C:0.12, G:0.07, T:0.46
Consensus pattern (20 bp):
TAATATATTTAACTTCTCAG
Found at i:8935568 original size:23 final size:23
Alignment explanation
Indices: 8935542--8935592 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
8935532 ATAAGTTACA
8935542 TAAATTTATTTCGGAATTAAATT
1 TAAATTTATTTCGGAATTAAATT
8935565 TAAATTTATTTCGGAATTAAATT
1 TAAATTTATTTCGGAATTAAATT
8935588 TAAAT
1 TAAAT
8935593 ATTTTTAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.41, C:0.04, G:0.08, T:0.47
Consensus pattern (23 bp):
TAAATTTATTTCGGAATTAAATT
Found at i:8937659 original size:19 final size:19
Alignment explanation
Indices: 8937630--8937678 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 19
8937620 TCTTCTGACC
8937630 AAAATAGAAAA-TAT-ATCAA
1 AAAATA-AAAAGTATAAT-AA
8937649 AAAACTAAAAAGTATAATAA
1 AAAA-TAAAAAGTATAATAA
8937669 AAAATAAAAA
1 AAAATAAAAA
8937679 ATTTACATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
19 14 0.52
20 11 0.41
21 2 0.07
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.18
Consensus pattern (19 bp):
AAAATAAAAAGTATAATAA
Found at i:8937679 original size:20 final size:19
Alignment explanation
Indices: 8937630--8937680 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
8937620 TCTTCTGACC
*
8937630 AAAATAGAAAATATATCAA
1 AAAATAAAAAATATATCAA
*
8937649 AAAACTAAAAAGTATAAT-AA
1 AAAA-TAAAAAATAT-ATCAA
8937669 AAAATAAAAAAT
1 AAAATAAAAAAT
8937681 TTACATATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 11 0.41
20 14 0.52
21 2 0.07
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.20
Consensus pattern (19 bp):
AAAATAAAAAATATATCAA
Found at i:8938438 original size:23 final size:23
Alignment explanation
Indices: 8938412--8938455 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
8938402 ATAATCATGA
8938412 CATAA-AAGCAAACAAAACTGTGC
1 CATAAGAA-CAAACAAAACTGTGC
*
8938435 CATAAGAATAAACAAAACTGT
1 CATAAGAACAAACAAAACTGT
8938456 CGTGAGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.55, C:0.18, G:0.11, T:0.16
Consensus pattern (23 bp):
CATAAGAACAAACAAAACTGTGC
Found at i:8950399 original size:15 final size:15
Alignment explanation
Indices: 8950376--8950405 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8950366 AAATTTATCA
*
8950376 AAATTATGTAGATAC
1 AAATGATGTAGATAC
8950391 AAATGATGTAGATAC
1 AAATGATGTAGATAC
8950406 TAAGAATCCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.07, G:0.17, T:0.30
Consensus pattern (15 bp):
AAATGATGTAGATAC
Found at i:8950681 original size:57 final size:57
Alignment explanation
Indices: 8950592--8950706 Score: 221
Period size: 57 Copynumber: 2.0 Consensus size: 57
8950582 AAAGCAAAAA
*
8950592 GATGTTTAGGATTTGTATACATGCAGATAATGCTATTGCTATTAAGGAATGTTGCTG
1 GATGTTTAGGATTTGTATACATGCAGACAATGCTATTGCTATTAAGGAATGTTGCTG
8950649 GATGTTTAGGATTTGTATACATGCAGACAATGCTATTGCTATTAAGGAATGTTGCTG
1 GATGTTTAGGATTTGTATACATGCAGACAATGCTATTGCTATTAAGGAATGTTGCTG
8950706 G
1 G
8950707 GCTTCTATTA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.28, C:0.10, G:0.25, T:0.37
Consensus pattern (57 bp):
GATGTTTAGGATTTGTATACATGCAGACAATGCTATTGCTATTAAGGAATGTTGCTG
Found at i:8958211 original size:15 final size:14
Alignment explanation
Indices: 8958179--8958216 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
8958169 TTTGAAAAAT
8958179 GTTTATTAA--TAA
1 GTTTATTAATTTAA
8958191 GTTTATTAATTTAA
1 GTTTATTAATTTAA
8958205 GGTTTATTAATT
1 -GTTTATTAATT
8958217 CATTTTTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 9 0.39
14 3 0.13
15 11 0.48
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.55
Consensus pattern (14 bp):
GTTTATTAATTTAA
Found at i:8967486 original size:13 final size:13
Alignment explanation
Indices: 8967468--8967496 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
8967458 TCTTAAGCGA
8967468 TTTGCATAATTAG
1 TTTGCATAATTAG
8967481 TTTGCATAATTAG
1 TTTGCATAATTAG
8967494 TTT
1 TTT
8967497 TCTTTGGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.07, G:0.14, T:0.52
Consensus pattern (13 bp):
TTTGCATAATTAG
Found at i:8969038 original size:2 final size:2
Alignment explanation
Indices: 8969033--8969065 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
8969023 ATAATATATA
8969033 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
8969066 ATTCTCGTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:8973543 original size:23 final size:23
Alignment explanation
Indices: 8973517--8973566 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
8973507 GGATTGCATG
* *
8973517 TAGAACCAATGAA-TGAAAATAAA
1 TAGAAACAATGAAGT-AAAAGAAA
*
8973540 TAGAAACGATGAAGTAAAAGAAA
1 TAGAAACAATGAAGTAAAAGAAA
8973563 TAGA
1 TAGA
8973567 TCGCATGAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 22 0.96
24 1 0.04
ACGTcount: A:0.60, C:0.06, G:0.18, T:0.16
Consensus pattern (23 bp):
TAGAAACAATGAAGTAAAAGAAA
Found at i:8974157 original size:23 final size:24
Alignment explanation
Indices: 8974123--8974464 Score: 292
Period size: 23 Copynumber: 14.7 Consensus size: 24
8974113 TTATTATCAT
*
8974123 CAAAATTTGACAGCATGTATAT-A-
1 CAAAATTGGACAGCATGTAT-TCAC
*
8974146 CAAAATTGGACAGCATTTATTCAC
1 CAAAATTGGACAGCATGTATTCAC
* * *
8974170 CAAAATTGGGCAGCATATATGT-AG
1 CAAAATTGGACAGCATGTAT-TCAC
*
8974194 C-AATTTGGACAGCACT-TATTCA-
1 CAAAATTGGACAGCA-TGTATTCAC
8974216 CAAAATTGGACAGCATGTATAT-A-
1 CAAAATTGGACAGCATGTAT-TCAC
*
8974239 CAAAATTGGACAGCATTTATTCAC
1 CAAAATTGGACAGCATGTATTCAC
* * *
8974263 CAAAATTGGGCAGCATATATGT-AG
1 CAAAATTGGACAGCATGTAT-TCAC
*
8974287 C-AATTTGGACAGCACT-TATTCA-
1 CAAAATTGGACAGCA-TGTATTCAC
8974309 CAAAATTGGACAGCATGTATAT-A-
1 CAAAATTGGACAGCATGTAT-TCAC
*
8974332 CAAAATTGGACAGCATTTATTCAC
1 CAAAATTGGACAGCATGTATTCAC
* * *
8974356 CAAAATTGGGCAGCATATATGT-AG
1 CAAAATTGGACAGCATGTAT-TCAC
*
8974380 C-AATTTGGACAGCACT-TATTCA-
1 CAAAATTGGACAGCA-TGTATTCAC
8974402 CAAAATTGGACAGCATGTATAT-A-
1 CAAAATTGGACAGCATGTAT-TCAC
*
8974425 CAAAATTGGACAGCATTTATTCAC
1 CAAAATTGGACAGCATGTATTCAC
*
8974449 CAAAATTGGGCAGCAT
1 CAAAATTGGACAGCAT
8974465 ATATGTAGCA
Statistics
Matches: 269, Mismatches: 24, Indels: 51
0.78 0.07 0.15
Matches are distributed among these distances:
22 13 0.05
23 172 0.64
24 81 0.30
25 3 0.01
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (24 bp):
CAAAATTGGACAGCATGTATTCAC
Found at i:8974282 original size:93 final size:93
Alignment explanation
Indices: 8974123--8974478 Score: 703
Period size: 93 Copynumber: 3.8 Consensus size: 93
8974113 TTATTATCAT
*
8974123 CAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAAATTGGGCAGCATAT
1 CAAAATTGGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAAATTGGGCAGCATAT
8974188 ATGTAGCAATTTGGACAGCACTTATTCA
66 ATGTAGCAATTTGGACAGCACTTATTCA
8974216 CAAAATTGGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAAATTGGGCAGCATAT
1 CAAAATTGGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAAATTGGGCAGCATAT
8974281 ATGTAGCAATTTGGACAGCACTTATTCA
66 ATGTAGCAATTTGGACAGCACTTATTCA
8974309 CAAAATTGGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAAATTGGGCAGCATAT
1 CAAAATTGGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAAATTGGGCAGCATAT
8974374 ATGTAGCAATTTGGACAGCACTTATTCA
66 ATGTAGCAATTTGGACAGCACTTATTCA
8974402 CAAAATTGGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAAATTGGGCAGCATAT
1 CAAAATTGGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAAATTGGGCAGCATAT
8974467 ATGTAGCAATTT
66 ATGTAGCAATTT
8974479 TTGACCATTA
Statistics
Matches: 262, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 262 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (93 bp):
CAAAATTGGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAAATTGGGCAGCATAT
ATGTAGCAATTTGGACAGCACTTATTCA
Found at i:8975273 original size:27 final size:28
Alignment explanation
Indices: 8975169--8975289 Score: 147
Period size: 28 Copynumber: 4.4 Consensus size: 28
8975159 TTTAATAAGT
* *
8975169 TCGCACACTTAGTG-TTCAATAATCAAAC
1 TCGCACACTTAGTGCTTC-ACAATTAAAC
** *
8975197 TCGCACACTTAGTGCTTTGCCATTAAAC
1 TCGCACACTTAGTGCTTCACAATTAAAC
*
8975225 TCGCACACTTAGTGCTTTACAATTAAAC
1 TCGCACACTTAGTGCTTCACAATTAAAC
*
8975253 TCGCACAC-TAGTGCTTCACAATTAAAT
1 TCGCACACTTAGTGCTTCACAATTAAAC
*
8975280 TTGCACACTT
1 TCGCACACTT
8975290 GGCATCGAAA
Statistics
Matches: 81, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
27 24 0.30
28 55 0.68
29 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.31
Consensus pattern (28 bp):
TCGCACACTTAGTGCTTCACAATTAAAC
Found at i:8990007 original size:91 final size:92
Alignment explanation
Indices: 8989912--8990099 Score: 247
Period size: 92 Copynumber: 2.1 Consensus size: 92
8989902 ATTCTTAATT
* * * * * *
8989912 AAAAAAAAAGTAATTAAGCCCCTA-TTTTTTTACACTC-ATTTAGGTACTTGAACTTTTAAAATG
1 AAAAAAAAAGCAATTAAGCACCTACTTTTTTTACACTCAATTGA-ATACTTAAACTTTCAAAATG
*
8989975 CATCAAAAA-AGCCCTCAAACCTTTTCAA
65 CATCAAAAAGA-CCCTAAAACCTTTTCAA
*
8990003 AAAAAAAAAGCAATTAAGCACCTACTTTTTTTGCACTCAATTGAATACTTAAACTTTCAAAATGC
1 AAAAAAAAAGCAATTAAGCACCTACTTTTTTTACACTCAATTGAATACTTAAACTTTCAAAATGC
*
8990068 ATCAAAAAGACCCTAAAACTTTTTCAA
66 ATCAAAAAGACCCTAAAACCTTTTCAA
*
8990095 CAAAA
1 AAAAA
8990100 GCAATTAAGT
Statistics
Matches: 84, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
91 22 0.26
92 57 0.68
93 5 0.06
ACGTcount: A:0.44, C:0.20, G:0.07, T:0.30
Consensus pattern (92 bp):
AAAAAAAAAGCAATTAAGCACCTACTTTTTTTACACTCAATTGAATACTTAAACTTTCAAAATGC
ATCAAAAAGACCCTAAAACCTTTTCAA
Found at i:8990135 original size:9 final size:9
Alignment explanation
Indices: 8990118--8990354 Score: 74
Period size: 9 Copynumber: 25.2 Consensus size: 9
8990108 GTTACTGCTC
*
8990118 TTATTAAAA
1 TTATAAAAA
8990127 TTATAAAAA
1 TTATAAAAA
* *
8990136 -AATTAAAA
1 TTATAAAAA
* *
8990144 TCAATAAAAT
1 T-TATAAAAA
*
8990154 TTATAAATA
1 TTATAAAAA
8990163 TTATTAAAATA
1 TTA-TAAAA-A
*
8990174 TAATAAAAAA
1 TTAT-AAAAA
*
8990184 TT-T-CAAA
1 TTATAAAAA
*
8990191 -TACTAAATAT
1 TTA-TAAA-AA
8990201 TTATTAAAAA
1 TTA-TAAAAA
*
8990211 TTAGAAAAA
1 TTATAAAAA
*
8990220 ATATAAAAA
1 TTATAAAAA
*
8990229 TCATAAAAA
1 TTATAAAAA
*
8990238 ATATAAAAAA
1 TTAT-AAAAA
*
8990248 TTGT-AAAA
1 TTATAAAAA
*
8990256 TTTTATAAAA
1 TTATA-AAAA
*
8990266 TATATAGAAA
1 T-TATAAAAA
*
8990276 TATAAAAAAA
1 T-TATAAAAA
8990286 TTATAAAAA
1 TTATAAAAA
* *
8990295 TTTTATAAAG
1 TTATA-AAAA
*
8990305 TCATAAGCAAA
1 TTATAA--AAA
*
8990316 TTATGCAAAA
1 TTAT-AAAAA
8990326 TGTA-AAGAAA
1 T-TATAA-AAA
*
8990336 -TATAAATA
1 TTATAAAAA
8990344 TTATAAAAA
1 TTATAAAAA
8990353 TT
1 TT
8990355 TAGTACCAAA
Statistics
Matches: 165, Mismatches: 41, Indels: 44
0.66 0.16 0.18
Matches are distributed among these distances:
6 1 0.01
7 3 0.02
8 18 0.11
9 63 0.38
10 56 0.34
11 23 0.14
12 1 0.01
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (9 bp):
TTATAAAAA
Found at i:8990203 original size:47 final size:46
Alignment explanation
Indices: 8990118--8990228 Score: 118
Period size: 47 Copynumber: 2.4 Consensus size: 46
8990108 GTTACTGCTC
*
8990118 TTATTAAAATTATAAAAAAATTAAAATCAATAAAATTTA-TAAATA
1 TTATTAAAATTATAAAAAAATTAAAATCAATAAAATTTATTAAAAA
* * *
8990163 TTATTAAAATATAATAAAAAATTTCAAAT-ACTAAATATTTATTAAAAA
1 TTATTAAAAT-T-ATAAAAAAATTAAAATCAATAAA-ATTTATTAAAAA
** *
8990211 TTAGAAAAAATATAAAAA
1 TTATTAAAATTATAAAAA
8990229 TCATAAAAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
45 10 0.18
46 13 0.24
47 20 0.36
48 12 0.22
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.34
Consensus pattern (46 bp):
TTATTAAAATTATAAAAAAATTAAAATCAATAAAATTTATTAAAAA
Found at i:8990265 original size:38 final size:40
Alignment explanation
Indices: 8990221--8990303 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 40
8990211 TTAGAAAAAA
*
8990221 TATAAAAATCATA-AAAAATAT-AAAAAATTGT-AAAATTT
1 TATAAAAAT-ATATAAAAATATAAAAAAATTATAAAAATTT
*
8990259 TAT-AAAATATATAGAAATATAAAAAAATTATAAAAATTT
1 TATAAAAATATATAAAAATATAAAAAAATTATAAAAATTT
8990298 TATAAA
1 TATAAA
8990304 GTCATAAGCA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
36 3 0.08
37 12 0.31
38 12 0.31
39 10 0.26
40 2 0.05
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (40 bp):
TATAAAAATATATAAAAATATAAAAAAATTATAAAAATTT
Found at i:8990556 original size:19 final size:18
Alignment explanation
Indices: 8990534--8990581 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
8990524 TATTTTTAAG
8990534 ATTTTTATAAAAAATTCTA
1 ATTTTTA-AAAAAATTCTA
* * *
8990553 ATTTTTAATAAATTTTTA
1 ATTTTTAAAAAAATTCTA
8990571 ATTTTTAAAAA
1 ATTTTTAAAAA
8990582 TTTTATTAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 18 0.72
19 7 0.28
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (18 bp):
ATTTTTAAAAAAATTCTA
Found at i:8990744 original size:87 final size:89
Alignment explanation
Indices: 8990645--8990816 Score: 242
Period size: 88 Copynumber: 2.0 Consensus size: 89
8990635 ATAAGACCAT
* * *
8990645 GGGCTTAATTGCTT-ATTTGAAAAATTTTGAGGGTCTTTTTGAGGCATTTTGAAAGTTCAAGTAC
1 GGGCTTAATTGCTTCATTTGAAAAAGTTTGAGGGCCTTTTTGAGGCATTTTAAAAGTTCAAGT-C
8990709 CT-AATTGAGTG-AAAAAAAAGTAG
65 CTCAATTGAGTGCAAAAAAAAGTAG
* * * * *
8990732 GGGCTTTATTGCTTCTTTTGAAGAAGTTTGAGGGCCTTTTTGATGCATTTTAAAAGTTCAAGTGC
1 GGGCTTAATTGCTTCATTTGAAAAAGTTTGAGGGCCTTTTTGAGGCATTTTAAAAGTTCAAGTCC
8990797 TCAATTGAGTGCAAAAAAAA
66 TCAATTGAGTGCAAAAAAAA
8990817 AAAAAGCTTA
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
87 15 0.20
88 51 0.69
89 8 0.11
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (89 bp):
GGGCTTAATTGCTTCATTTGAAAAAGTTTGAGGGCCTTTTTGAGGCATTTTAAAAGTTCAAGTCC
TCAATTGAGTGCAAAAAAAAGTAG
Found at i:8990831 original size:88 final size:87
Alignment explanation
Indices: 8990647--8990842 Score: 227
Period size: 88 Copynumber: 2.3 Consensus size: 87
8990637 AAGACCATGG
* * *
8990647 GCTTAATTGCTTATTTGAAAAATTTTGAGGGTCTTTTTGAGGCATTTTGAAAGTTCAAGTACCTA
1 GCTTAATTGCTTATTTGAAAAAGTTTGAGGGCCTTTTTGAGGCATTTTAAAAGTTCAAGTACCTA
* ***
8990712 ATTGAGTGAAAAAAAAGTAGGG
66 ATTGAGTGAAAAAAAAGAAAAA
* * * * *
8990734 GCTTTATTGCTTCTTTTGAAGAAGTTTGAGGGCCTTTTTGATGCATTTTAAAAGTTCAAGT-GCT
1 GCTTAATTGCTT-ATTTGAAAAAGTTTGAGGGCCTTTTTGAGGCATTTTAAAAGTTCAAGTACCT
8990798 CAATTGAGTGCAAAAAAAA-AAAAA
65 -AATTGAGTG-AAAAAAAAGAAAAA
*
8990822 GCTTAATTGC-TATTTAAAAAA
1 GCTTAATTGCTTATTTGAAAAA
8990843 AAATCTAAAA
Statistics
Matches: 90, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
86 7 0.08
87 14 0.16
88 61 0.68
89 8 0.09
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.36
Consensus pattern (87 bp):
GCTTAATTGCTTATTTGAAAAAGTTTGAGGGCCTTTTTGAGGCATTTTAAAAGTTCAAGTACCTA
ATTGAGTGAAAAAAAAGAAAAA
Found at i:8992902 original size:24 final size:24
Alignment explanation
Indices: 8992874--8992982 Score: 164
Period size: 24 Copynumber: 4.5 Consensus size: 24
8992864 ACGATTTGAA
*
8992874 GCTCCCATAGGAGGACCACCTCTT
1 GCTCCCATAGGAGGACCACCCCTT
8992898 GCTCCCATAGGAGGACCACCCCTT
1 GCTCCCATAGGAGGACCACCCCTT
*
8992922 GCTCCCATCGGAGGACCACCCCTT
1 GCTCCCATAGGAGGACCACCCCTT
* * *
8992946 GCTCCCATCGAAGGACCACCTCTT
1 GCTCCCATAGGAGGACCACCCCTT
*
8992970 GCTCCCCTAGGAG
1 GCTCCCATAGGAG
8992983 AAAATTCTTC
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 78 1.00
ACGTcount: A:0.19, C:0.41, G:0.21, T:0.18
Consensus pattern (24 bp):
GCTCCCATAGGAGGACCACCCCTT
Found at i:9008760 original size:2 final size:2
Alignment explanation
Indices: 9008753--9008778 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
9008743 ATTTTTAAAG
9008753 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
9008779 CTTTAAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9011980 original size:124 final size:125
Alignment explanation
Indices: 9011756--9012092 Score: 570
Period size: 125 Copynumber: 2.7 Consensus size: 125
9011746 TGTTTTTGGT
*
9011756 CAAATAGTATAAAATCGATTCTACCAGGATGC-ACTTTGAGAAGAAATTGTGAAATCGCGCCCTC
1 CAAATAGTATAAAATCGCTTCTACCAGGATGCTA-TTTGAGAAGAAATTGTGAAATCGCGCCCTC
* *
9011820 GTGGACGCGATTTTGCTACAGTAGGTCATGTCAGAAATAA-TTTTTTTTGACGTTTCTGAG
65 GTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTTTTCACGTTTCTGAG
* * * *
9011880 CAAATAGTATAAAATCGCCTATACTAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGACCTCG
1 CAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
*
9011945 TGGATGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTTTTCACGTTTCTGAG
66 TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTTTTCACGTTTCTGAG
9012005 CAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
1 CAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
*
9012070 TGGACGCGATTTTACTACAGTAG
66 TGGACGCGATTTTGCTACAGTAG
9012093 CAAGTTTGGG
Statistics
Matches: 197, Mismatches: 14, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
124 95 0.48
125 102 0.52
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (125 bp):
CAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTTTTCACGTTTCTGAG
Found at i:9014416 original size:11 final size:13
Alignment explanation
Indices: 9014392--9014423 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
9014382 TAGTTTATTA
9014392 ATATTTTAATATG
1 ATATTTTAATATG
9014405 AT-TTTTAA-ATG
1 ATATTTTAATATG
9014416 ATATTTTA
1 ATATTTTA
9014424 TTAATTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.28
12 11 0.61
13 2 0.11
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (13 bp):
ATATTTTAATATG
Found at i:9017338 original size:10 final size:10
Alignment explanation
Indices: 9017323--9017347 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
9017313 CAAATCTAAC
9017323 ATTATGTAAA
1 ATTATGTAAA
9017333 ATTATGTAAA
1 ATTATGTAAA
9017343 ATTAT
1 ATTAT
9017348 TAAGTCCCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (10 bp):
ATTATGTAAA
Found at i:9017390 original size:55 final size:55
Alignment explanation
Indices: 9017331--9017782 Score: 431
Period size: 55 Copynumber: 8.0 Consensus size: 55
9017321 ACATTATGTA
9017331 AAATTATGTAAAATTATTAAGTCCCAAAATTTTGTTAATGGTTAGTAAAATTATC
1 AAATTATGTAAAATTATTAAGTCCCAAAATTTTGTTAATGGTTAGTAAAATTATC
* * * ***
9017386 AAATTATGTAAAATTATGTAAAATTATTAAGCCAAAATTTTTTTAATTAAACTAGGTAAAATTAT
1 AAATTATGTAAAATTAT-T---A--AGT--CCCAAAATTTTGTTAA-T-GGTTA-GTAAAATTAT
9017451 C
55 C
* * *
9017452 AAATCATGTAAAATTATTAAGTCGCAAAATTTTGTTAATAGTTAG------TA--
1 AAATTATGTAAAATTATTAAGTCCCAAAATTTTGTTAATGGTTAGTAAAATTATC
9017499 AAATTATGTAAAATTATTAAGTCCCAAAATTTTGTTAATGGTTAGTAAAATTATC
1 AAATTATGTAAAATTATTAAGTCCCAAAATTTTGTTAATGGTTAGTAAAATTATC
* * * **
9017554 AAATTATGTAAAATTATGTAAAATTATTAAGCCAAAAAATTT-TTAATTAAATTAGGTAAAATTA
1 AAATTATGTAAAATTAT-T---A--AGT---CCCAAAATTTTGTTAA-T-GGTTA-GTAAAATTA
9017618 TC
54 TC
9017620 AAATTATGTAAAATTATTAAGTCCCAAAATTTTGTTAATGGTTAGTAAAATTATC
1 AAATTATGTAAAATTATTAAGTCCCAAAATTTTGTTAATGGTTAGTAAAATTATC
* *
9017675 AAATTATGTTAAATTATTAAGT-CCAACAATTGTGTTAATGGTTAGTAAAATTATC
1 AAATTATGTAAAATTATTAAGTCCCAA-AATTTTGTTAATGGTTAGTAAAATTATC
* * *
9017730 AAATTATGTTAAATTATTAAGT-CCAACAATTGTGTTAATGGCTAGTAAAATTA
1 AAATTATGTAAAATTATTAAGTCCCAA-AATTTTGTTAATGGTTAGTAAAATTA
9017783 AGTTAGGGTT
Statistics
Matches: 335, Mismatches: 29, Indels: 66
0.78 0.07 0.15
Matches are distributed among these distances:
47 42 0.13
49 2 0.01
53 2 0.01
54 4 0.01
55 146 0.44
56 8 0.02
57 11 0.03
58 17 0.05
59 2 0.01
60 4 0.01
61 4 0.01
62 2 0.01
63 18 0.05
64 11 0.03
65 7 0.02
66 55 0.16
ACGTcount: A:0.44, C:0.07, G:0.11, T:0.39
Consensus pattern (55 bp):
AAATTATGTAAAATTATTAAGTCCCAAAATTTTGTTAATGGTTAGTAAAATTATC
Found at i:9017401 original size:10 final size:10
Alignment explanation
Indices: 9017386--9017412 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
9017376 TAAAATTATC
9017386 AAATTATGTA
1 AAATTATGTA
9017396 AAATTATGTA
1 AAATTATGTA
9017406 AAATTAT
1 AAATTAT
9017413 TAAGCCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (10 bp):
AAATTATGTA
Found at i:9017501 original size:21 final size:21
Alignment explanation
Indices: 9017477--9017550 Score: 60
Period size: 21 Copynumber: 3.3 Consensus size: 21
9017467 ATTAAGTCGC
9017477 AAAATTTTGTTAATAGTTAGT
1 AAAATTTTGTTAATAGTTAGT
* *
9017498 AAAATTATGTAAAATTA-TTAAGT
1 AAAATTTTGT-TAA-TAGTT-AGT
*
9017521 CCCAAAATTTTGTTAATGGTTAGT
1 ---AAAATTTTGTTAATAGTTAGT
9017545 AAAATT
1 AAAATT
9017551 ATCAAATTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 14
0.68 0.08 0.23
Matches are distributed among these distances:
21 15 0.37
22 4 0.10
23 5 0.12
24 4 0.10
25 4 0.10
26 9 0.22
ACGTcount: A:0.42, C:0.04, G:0.12, T:0.42
Consensus pattern (21 bp):
AAAATTTTGTTAATAGTTAGT
Found at i:9017527 original size:26 final size:25
Alignment explanation
Indices: 9017452--9017529 Score: 67
Period size: 26 Copynumber: 3.2 Consensus size: 25
9017442 TAAAATTATC
*
9017452 AAATCATGTAAAATTATTAAGTCGCA
1 AAATTATGTAAAATTATTAAGTC-CA
* *
9017478 AAATTTTGT-TAA-TAGTT-AGT--A
1 AAATTATGTAAAATTA-TTAAGTCCA
9017499 AAATTATGTAAAATTATTAAGTCCCA
1 AAATTATGTAAAATTATTAAGT-CCA
9017525 AAATT
1 AAATT
9017530 TTGTTAATGG
Statistics
Matches: 40, Mismatches: 5, Indels: 14
0.68 0.08 0.24
Matches are distributed among these distances:
21 9 0.22
22 4 0.10
23 5 0.12
24 5 0.12
25 4 0.10
26 13 0.32
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (25 bp):
AAATTATGTAAAATTATTAAGTCCA
Found at i:9017527 original size:47 final size:47
Alignment explanation
Indices: 9017452--9017552 Score: 175
Period size: 47 Copynumber: 2.1 Consensus size: 47
9017442 TAAAATTATC
* *
9017452 AAATCATGTAAAATTATTAAGTCGCAAAATTTTGTTAATAGTTAGTA
1 AAATTATGTAAAATTATTAAGTCCCAAAATTTTGTTAATAGTTAGTA
*
9017499 AAATTATGTAAAATTATTAAGTCCCAAAATTTTGTTAATGGTTAGTA
1 AAATTATGTAAAATTATTAAGTCCCAAAATTTTGTTAATAGTTAGTA
9017546 AAATTAT
1 AAATTAT
9017553 CAAATTATGT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 51 1.00
ACGTcount: A:0.43, C:0.06, G:0.12, T:0.40
Consensus pattern (47 bp):
AAATTATGTAAAATTATTAAGTCCCAAAATTTTGTTAATAGTTAGTA
Found at i:9017565 original size:65 final size:66
Alignment explanation
Indices: 9017496--9017636 Score: 207
Period size: 66 Copynumber: 2.2 Consensus size: 66
9017486 TTAATAGTTA
* * **
9017496 GTAAAATTATGTAAAATTATTAAGTCCCAAAATTTTGTTAA-T-GGTTA-GTAAAATTATCAAAT
1 GTAAAATTATGTAAAATTATTAAG-CCAAAAAATTT-TTAATTAAATTAGGTAAAATTATCAAAT
9017558 TAT
64 TAT
9017561 GTAAAATTATGTAAAATTATTAAGCCAAAAAATTTTTAATTAAATTAGGTAAAATTATCAAATTA
1 GTAAAATTATGTAAAATTATTAAGCCAAAAAATTTTTAATTAAATTAGGTAAAATTATCAAATTA
9017626 T
66 T
9017627 GTAAAATTAT
1 GTAAAATTAT
9017637 TAAGTCCCAA
Statistics
Matches: 69, Mismatches: 4, Indels: 5
0.88 0.05 0.06
Matches are distributed among these distances:
63 4 0.06
64 10 0.14
65 27 0.39
66 28 0.41
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.39
Consensus pattern (66 bp):
GTAAAATTATGTAAAATTATTAAGCCAAAAAATTTTTAATTAAATTAGGTAAAATTATCAAATTA
T
Found at i:9017569 original size:10 final size:10
Alignment explanation
Indices: 9017554--9017580 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
9017544 TAAAATTATC
9017554 AAATTATGTA
1 AAATTATGTA
9017564 AAATTATGTA
1 AAATTATGTA
9017574 AAATTAT
1 AAATTAT
9017581 TAAGCCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (10 bp):
AAATTATGTA
Found at i:9017612 original size:168 final size:168
Alignment explanation
Indices: 9017328--9017746 Score: 669
Period size: 168 Copynumber: 2.4 Consensus size: 168
9017318 CTAACATTAT
9017328 GTAAAATTATGTAAAATTATTAAGTCCCAAAATTTTGTTAATGGTTAGTAAAATTATCAAATTAT
1 GTAAAATTATGTAAAATTATTAAGTCCCAAAATTTTGTTAATGGTTAGTAAAATTATCAAATTAT
**
9017393 GTAAAATTATGTAAAATTATTAAGCCAAAATTTTTTTAATTAAACTAGGTAAAATTATCAAATCA
66 GTAAAATTATGTAAAATTATTAAGCCAAAAAATTTTTAATTAAACTAGGTAAAATTATCAAATCA
*
9017458 TGTAAAATTATTAAGTCGCAAAATTTTGTTAATAGTTA
131 TGTAAAATTATTAAGTCCCAAAATTTTGTTAATAGTTA
9017496 GTAAAATTATGTAAAATTATTAAGTCCCAAAATTTTGTTAATGGTTAGTAAAATTATCAAATTAT
1 GTAAAATTATGTAAAATTATTAAGTCCCAAAATTTTGTTAATGGTTAGTAAAATTATCAAATTAT
* *
9017561 GTAAAATTATGTAAAATTATTAAGCCAAAAAATTTTTAATTAAATTAGGTAAAATTATCAAATTA
66 GTAAAATTATGTAAAATTATTAAGCCAAAAAATTTTTAATTAAACTAGGTAAAATTATCAAATCA
*
9017626 TGTAAAATTATTAAGTCCCAAAATTTTGTTAATGGTTA
131 TGTAAAATTATTAAGTCCCAAAATTTTGTTAATAGTTA
* *
9017664 GTAAAATTATCAAATTATGTTAAATTATTAAGT-CCAACAATTGTGTTAATGGTTAGTAAAATTA
1 G------TA--AAATTATGTAAAATTATTAAGTCCCAA-AATTTTGTTAATGGTTAGTAAAATTA
*
9017728 TCAAATTATGTTAAATTAT
57 TCAAATTATGTAAAATTAT
9017747 TAAGTCCAAC
Statistics
Matches: 233, Mismatches: 9, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
168 163 0.70
174 2 0.01
175 4 0.02
176 64 0.27
ACGTcount: A:0.44, C:0.06, G:0.10, T:0.40
Consensus pattern (168 bp):
GTAAAATTATGTAAAATTATTAAGTCCCAAAATTTTGTTAATGGTTAGTAAAATTATCAAATTAT
GTAAAATTATGTAAAATTATTAAGCCAAAAAATTTTTAATTAAACTAGGTAAAATTATCAAATCA
TGTAAAATTATTAAGTCCCAAAATTTTGTTAATAGTTA
Found at i:9017625 original size:18 final size:18
Alignment explanation
Indices: 9017602--9017636 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
9017592 ATTTTTAATT
9017602 AAATTAGGTAAAATTATC
1 AAATTAGGTAAAATTATC
*
9017620 AAATTATGTAAAATTAT
1 AAATTAGGTAAAATTAT
9017637 TAAGTCCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.51, C:0.03, G:0.09, T:0.37
Consensus pattern (18 bp):
AAATTAGGTAAAATTATC
Found at i:9017801 original size:18 final size:18
Alignment explanation
Indices: 9017778--9018109 Score: 259
Period size: 18 Copynumber: 19.1 Consensus size: 18
9017768 TGGCTAGTAA
9017778 AATTAAGTTAGGGTTTTT
1 AATTAAGTTAGGGTTTTT
*
9017796 AATTAAGTTAGGATTTTT
1 AATTAAGTTAGGGTTTTT
*
9017814 AATTAAATTA-GGTTTTT
1 AATTAAGTTAGGGTTTTT
* *
9017831 AATTAACTTA-AG---TT
1 AATTAAGTTAGGGTTTTT
* *
9017845 -A--AGGTTAGGATTTTT
1 AATTAAGTTAGGGTTTTT
9017860 AATTAAATTAGGTTAGGGTTTTT
1 AATT--A--A-GTTAGGGTTTTT
9017883 AATTAAGTTA-GG----T
1 AATTAAGTTAGGGTTTTT
** * *
9017896 --TTGGGTTTGGGCTTTT
1 AATTAAGTTAGGGTTTTT
9017912 AATTAAGTTAGGGTTTTT
1 AATTAAGTTAGGGTTTTT
9017930 AATTAAGTT-GGTGTTTTT
1 AATTAAGTTAGG-GTTTTT
**
9017948 AATTAAGTTA-GG-TTAG
1 AATTAAGTTAGGGTTTTT
** *
9017964 GGTTAGGGTTAGGGTTTTT
1 AATTA-AGTTAGGGTTTTT
*
9017983 AATTAAGTTAGGATTTTT
1 AATTAAGTTAGGGTTTTT
*
9018001 AATTAAATTAGGGTTTTT
1 AATTAAGTTAGGGTTTTT
*
9018019 TATTAAGTTAGGGTTTTT
1 AATTAAGTTAGGGTTTTT
*
9018037 AATTAAATTAGGGTTTTT
1 AATTAAGTTAGGGTTTTT
* *
9018055 AACTAAGTTAAGGTTTTT
1 AATTAAGTTAGGGTTTTT
*
9018073 AATTAAATTAGGGTTTTT
1 AATTAAGTTAGGGTTTTT
* *
9018091 AATTAAATTAAGGTTTTT
1 AATTAAGTTAGGGTTTTT
9018109 A
1 A
9018110 TTACATCAAA
Statistics
Matches: 248, Mismatches: 42, Indels: 48
0.73 0.12 0.14
Matches are distributed among these distances:
11 9 0.04
12 2 0.01
13 2 0.01
14 2 0.01
15 2 0.01
16 7 0.03
17 25 0.10
18 176 0.71
19 6 0.02
20 1 0.00
21 1 0.00
23 15 0.06
ACGTcount: A:0.30, C:0.01, G:0.21, T:0.49
Consensus pattern (18 bp):
AATTAAGTTAGGGTTTTT
Found at i:9017863 original size:29 final size:28
Alignment explanation
Indices: 9017821--9017879 Score: 82
Period size: 29 Copynumber: 2.1 Consensus size: 28
9017811 TTTAATTAAA
*
9017821 TTAGGTTTTTAATTAACTTAAGTTAAGG
1 TTAGGTTTTTAATTAAATTAAGTTAAGG
* *
9017849 TTAGGATTTTTAATTAAATTAGGTTAGGG
1 TTAGG-TTTTTAATTAAATTAAGTTAAGG
9017878 TT
1 TT
9017880 TTTAATTAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 5 0.19
29 22 0.81
ACGTcount: A:0.31, C:0.02, G:0.20, T:0.47
Consensus pattern (28 bp):
TTAGGTTTTTAATTAAATTAAGTTAAGG
Found at i:9017893 original size:23 final size:23
Alignment explanation
Indices: 9017784--9017967 Score: 132
Period size: 23 Copynumber: 8.4 Consensus size: 23
9017774 GTAAAATTAA
9017784 GTTAGGGTTTTTAATTAAGTTAG
1 GTTAGGGTTTTTAATTAAGTTAG
*
9017807 G--A---TTTTTAATTAAATTAG
1 GTTAGGGTTTTTAATTAAGTTAG
9017825 GTT----TTTAATTAACTTAAGTTAAG
1 GTTAGGGTTT--TTAA-TTAAGTT-AG
* *
9017848 GTTAGGATTTTTAATTAAATTAG
1 GTTAGGGTTTTTAATTAAGTTAG
9017871 GTTAGGGTTTTTAATTAAGTTAG
1 GTTAGGGTTTTTAATTAAGTTAG
* *
9017894 GTTTGGGTTTGGGCTT--TTAA-TTAA
1 GTTAGGGTTT----TTAATTAAGTTAG
9017918 GTTAGGGTTTTTAATTAAGTT-G
1 GTTAGGGTTTTTAATTAAGTTAG
9017940 G-T---GTTTTTAATTAAGTTAG
1 GTTAGGGTTTTTAATTAAGTTAG
9017959 GTTAGGGTT
1 GTTAGGGTT
9017968 AGGGTTAGGG
Statistics
Matches: 130, Mismatches: 9, Indels: 44
0.71 0.05 0.24
Matches are distributed among these distances:
18 31 0.24
19 5 0.04
20 3 0.02
21 6 0.05
22 11 0.08
23 43 0.33
24 18 0.14
25 8 0.06
27 5 0.04
ACGTcount: A:0.27, C:0.01, G:0.23, T:0.49
Consensus pattern (23 bp):
GTTAGGGTTTTTAATTAAGTTAG
Found at i:9017912 original size:52 final size:47
Alignment explanation
Indices: 9017794--9017938 Score: 143
Period size: 52 Copynumber: 3.0 Consensus size: 47
9017784 GTTAGGGTTT
* * *
9017794 TTAA-TTAA-GTTAGGATTTTTAATTAAATTA-GGTTTTTAATTAAC
1 TTAAGTTAAGGTTAGGACTTTTAATTAAGTTAGGGTTTTTAATTAAG
*
9017838 TTAAGTTAAGGTTAGGATTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAG
1 TTAAGTTAAGGTTAGGACTTTTAATT--A--A-GTTAGGGTTTTTAATTAAG
* ** * *
9017890 TTAGGTTTGGGTTTGGGCTTTTAATTAAGTTAGGGTTTTTAATTAAG
1 TTAAGTTAAGGTTAGGACTTTTAATTAAGTTAGGGTTTTTAATTAAG
9017937 TT
1 TT
9017939 GGTGTTTTTA
Statistics
Matches: 85, Mismatches: 8, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
44 4 0.05
45 4 0.05
46 16 0.19
47 21 0.25
48 2 0.02
50 2 0.02
51 3 0.04
52 33 0.39
ACGTcount: A:0.30, C:0.01, G:0.20, T:0.49
Consensus pattern (47 bp):
TTAAGTTAAGGTTAGGACTTTTAATTAAGTTAGGGTTTTTAATTAAG
Found at i:9018161 original size:25 final size:26
Alignment explanation
Indices: 9018105--9018168 Score: 94
Period size: 25 Copynumber: 2.5 Consensus size: 26
9018095 AAATTAAGGT
9018105 TTTTATTACATCAAATAGAACATCTA
1 TTTTATTACATCAAATAGAACATCTA
* * *
9018131 TTTTATTATATTAAATA-AACTTCTA
1 TTTTATTACATCAAATAGAACATCTA
9018156 TTTTATTACATCA
1 TTTTATTACATCA
9018169 GATAATAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
25 18 0.55
26 15 0.45
ACGTcount: A:0.39, C:0.12, G:0.02, T:0.47
Consensus pattern (26 bp):
TTTTATTACATCAAATAGAACATCTA
Found at i:9018604 original size:18 final size:18
Alignment explanation
Indices: 9018577--9018611 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9018567 GGAAAAAGGA
* *
9018577 TACATGTAAGGGTTAGGG
1 TACATATAAGGGCTAGGG
9018595 TACATATAAGGGCTAGG
1 TACATATAAGGGCTAGG
9018612 AAACACACCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.34, T:0.26
Consensus pattern (18 bp):
TACATATAAGGGCTAGGG
Found at i:9019379 original size:37 final size:37
Alignment explanation
Indices: 9019315--9019471 Score: 199
Period size: 37 Copynumber: 4.0 Consensus size: 37
9019305 TACGTATGAT
*
9019315 CACTTATCAC-TTGTCCCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
*
9019351 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
9019388 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T--AGC
*
9019431 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGC
1 ---CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
9019471 C
1 C
9019472 GAAGCTATCA
Statistics
Matches: 107, Mismatches: 4, Indels: 19
0.82 0.03 0.15
Matches are distributed among these distances:
36 10 0.09
37 54 0.50
39 2 0.02
40 4 0.04
41 1 0.01
42 1 0.01
43 3 0.03
44 2 0.02
46 30 0.28
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
Found at i:9019441 original size:46 final size:46
Alignment explanation
Indices: 9019388--9019610 Score: 257
Period size: 52 Copynumber: 4.6 Consensus size: 46
9019378 TAAGTGTAGC
* *
9019388 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
* * *
9019434 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
*
9019480 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
* *
9019532 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
*
9019584 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
9019611 AGTACTCAAA
Statistics
Matches: 161, Mismatches: 9, Indels: 14
0.88 0.05 0.08
Matches are distributed among these distances:
46 68 0.42
49 1 0.01
50 1 0.01
51 3 0.02
52 88 0.55
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
Found at i:9019507 original size:52 final size:52
Alignment explanation
Indices: 9019431--9019604 Score: 267
Period size: 52 Copynumber: 3.3 Consensus size: 52
9019421 TAGCTAAAGC
* * *
9019431 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
9019484 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
* ** *
9019536 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
9019588 TATCACTTTATCACTTG
1 TATCACTTT-TCACTTG
9019605 ATCAGAAGTA
Statistics
Matches: 112, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
52 94 0.84
53 18 0.16
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.36
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
Found at i:9019576 original size:98 final size:98
Alignment explanation
Indices: 9019387--9019610 Score: 244
Period size: 98 Copynumber: 2.3 Consensus size: 98
9019377 ATAAGTGTAG
* * * *
9019387 CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTC
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGCCAC
*
9019452 TTGATCAGATAAGTATAGCCGAAGCTATCA-CTTA
66 TTGATCAGATAAGTATAGCCGAAGCTA-AAGC-TA
* * *
9019486 TCACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT-CCAC
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGCCAC
* * *
9019549 TTG-TCACTTGATCAG-ATAAG-TGTAGCTAAAGCTA
66 TTGATCA---GATAAGTAT-AGCCGAAGCTAAAGCTA
*
9019583 CCACTTATCACTTTATCACTTGATCAGA
1 CCACTTATCACTTTGTCACTTGATCAGA
9019611 AGTACTCAAA
Statistics
Matches: 105, Mismatches: 14, Indels: 13
0.80 0.11 0.10
Matches are distributed among these distances:
96 3 0.03
97 17 0.16
98 69 0.66
99 16 0.15
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (98 bp):
CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGCCAC
TTGATCAGATAAGTATAGCCGAAGCTAAAGCTA
Found at i:9022784 original size:29 final size:30
Alignment explanation
Indices: 9022742--9022805 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 30
9022732 GCCATTGATG
*
9022742 AAAATATAAAAAAATTTAAAATTATTTTTA
1 AAAATATAAAAAAATTTAAAATTATTTTCA
9022772 AAAATAT-AAAAAATTTAAAATTATTTTCA
1 AAAATATAAAAAAATTTAAAATTATTTTCA
9022801 AAAAT
1 AAAAT
9022806 GAAATTGAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 26 0.79
30 7 0.21
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (30 bp):
AAAATATAAAAAAATTTAAAATTATTTTCA
Found at i:9022860 original size:40 final size:40
Alignment explanation
Indices: 9022816--9022904 Score: 160
Period size: 40 Copynumber: 2.2 Consensus size: 40
9022806 GAAATTGAGG
*
9022816 GGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAA
1 GGAAATTGAAATTAAATATGGATTTGAGAGAATTTTAGAA
*
9022856 GGAAATTGAAATTAAATATGGGTTTGAGAGAATTTTAGAA
1 GGAAATTGAAATTAAATATGGATTTGAGAGAATTTTAGAA
9022896 GGAAATTGA
1 GGAAATTGA
9022905 GAGGATTAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.43, C:0.00, G:0.26, T:0.31
Consensus pattern (40 bp):
GGAAATTGAAATTAAATATGGATTTGAGAGAATTTTAGAA
Found at i:9024062 original size:17 final size:17
Alignment explanation
Indices: 9024014--9024060 Score: 62
Period size: 16 Copynumber: 2.8 Consensus size: 17
9024004 ATTCAATATT
*
9024014 TAAT-TTTTAGATTT-A
1 TAATATTTTATATTTAA
9024029 TAATATTTTATATTTAA
1 TAATATTTTATATTTAA
9024046 TAATATATTTATATT
1 TAATAT-TTTATATT
9024061 AAAAGTCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 4 0.14
16 9 0.32
17 7 0.25
18 8 0.29
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (17 bp):
TAATATTTTATATTTAA
Found at i:9033030 original size:19 final size:18
Alignment explanation
Indices: 9032991--9033033 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
9032981 CCTTTAATAT
*
9032991 TTTTTAAAATTTTTATGA
1 TTTTTAAAATTATTATGA
9033009 TTTTTAAAATATATTA-GAA
1 TTTTTAAAAT-TATTATG-A
9033028 TTTTTA
1 TTTTTA
9033034 CATGTATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (18 bp):
TTTTTAAAATTATTATGA
Found at i:9034645 original size:12 final size:12
Alignment explanation
Indices: 9034615--9034647 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
9034605 TATATATTTT
9034615 AAAATT-ATATA
1 AAAATTAATATA
9034626 AAAA-TAATATA
1 AAAATTAATATA
9034637 AAAATTAATAT
1 AAAATTAATAT
9034648 GGGCGGGTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:9035105 original size:19 final size:20
Alignment explanation
Indices: 9035078--9035115 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
9035068 TTTTAAATAT
*
9035078 TATATTTTA-ATATTTAAAA
1 TATAGTTTACATATTTAAAA
*
9035097 TATAGTTTACATGTTTAAA
1 TATAGTTTACATATTTAAA
9035116 TTAAATTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (20 bp):
TATAGTTTACATATTTAAAA
Found at i:9046533 original size:15 final size:15
Alignment explanation
Indices: 9046513--9046546 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
9046503 CCCTTTCACA
* *
9046513 TTCCTCTTCCTTTCT
1 TTCCTCCTCCTCTCT
9046528 TTCCTCCTCCTCTCT
1 TTCCTCCTCCTCTCT
9046543 TTCC
1 TTCC
9046547 GTTCCTTGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (15 bp):
TTCCTCCTCCTCTCT
Found at i:9054002 original size:23 final size:24
Alignment explanation
Indices: 9053976--9054023 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
9053966 AATTGTATTT
*
9053976 TTTACTATAAT-AAAAATATACAA
1 TTTAATATAATAAAAAATATACAA
* *
9053999 TTTAATTTCATAAAAAATATACAA
1 TTTAATATAATAAAAAATATACAA
9054023 T
1 T
9054024 CTTTGACTCC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 8 0.38
24 13 0.62
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (24 bp):
TTTAATATAATAAAAAATATACAA
Found at i:9054894 original size:7 final size:7
Alignment explanation
Indices: 9054882--9054908 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
9054872 CATTGCTTCT
9054882 CCCATTA
1 CCCATTA
9054889 CCCATTA
1 CCCATTA
9054896 CCCATTA
1 CCCATTA
9054903 CCCATT
1 CCCATT
9054909 TTCTTTTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.44, G:0.00, T:0.30
Consensus pattern (7 bp):
CCCATTA
Found at i:9055609 original size:21 final size:20
Alignment explanation
Indices: 9055584--9055625 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
9055574 ATTTTCTAAA
9055584 TATAAAAATTTGGGATTTTTT
1 TATAAAAATTT-GGATTTTTT
* *
9055605 TATAAATATTTTGATTTTTT
1 TATAAAAATTTGGATTTTTT
9055625 T
1 T
9055626 TTTGTAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.60
Consensus pattern (20 bp):
TATAAAAATTTGGATTTTTT
Found at i:9056189 original size:15 final size:16
Alignment explanation
Indices: 9056169--9056201 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9056159 GATATGTCAC
*
9056169 AATTTT-ATTTTTTAA
1 AATTTTGATTATTTAA
9056184 AATTTTGATTATTTAA
1 AATTTTGATTATTTAA
9056200 AA
1 AA
9056202 AAATCATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (16 bp):
AATTTTGATTATTTAA
Found at i:9060858 original size:32 final size:32
Alignment explanation
Indices: 9060816--9060886 Score: 97
Period size: 32 Copynumber: 2.2 Consensus size: 32
9060806 TTTGTTGGTT
*
9060816 TTGAAATTATTATGTCTTAAATTTGTTAGATA
1 TTGAAATTATTATGTCTTAAACTTGTTAGATA
* * * *
9060848 TTGAATTTATTATGTTTTAAGCTTGTTGGATA
1 TTGAAATTATTATGTCTTAAACTTGTTAGATA
9060880 TTGAAAT
1 TTGAAAT
9060887 GATTGACAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.03, G:0.15, T:0.51
Consensus pattern (32 bp):
TTGAAATTATTATGTCTTAAACTTGTTAGATA
Found at i:9061800 original size:20 final size:20
Alignment explanation
Indices: 9061775--9061843 Score: 84
Period size: 20 Copynumber: 3.2 Consensus size: 20
9061765 TAATACCTAC
9061775 ATTCGAATATATATATACAT
1 ATTCGAATATATATATACAT
*
9061795 ATTCGAATACATAGCTAATACAT
1 ATTCGAATATATA--T-ATACAT
9061818 ACATTCGAATATATATATACAT
1 --ATTCGAATATATATATACAT
9061840 ATTC
1 ATTC
9061844 ATCATATACA
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
20 16 0.38
22 7 0.17
23 7 0.17
25 12 0.29
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.36
Consensus pattern (20 bp):
ATTCGAATATATATATACAT
Found at i:9061807 original size:45 final size:45
Alignment explanation
Indices: 9061754--9061843 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
9061744 ATTTATACCT
*
9061754 GAATACATAGCTAATACCTACATTCGAATATATATATACATATTC
1 GAATACATAGCTAATACATACATTCGAATATATATATACATATTC
9061799 GAATACATAGCTAATACATACATTCGAATATATATATACATATTC
1 GAATACATAGCTAATACATACATTCGAATATATATATACATATTC
9061844 ATCATATACA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (45 bp):
GAATACATAGCTAATACATACATTCGAATATATATATACATATTC
Found at i:9061826 original size:25 final size:25
Alignment explanation
Indices: 9061754--9061828 Score: 97
Period size: 25 Copynumber: 3.2 Consensus size: 25
9061744 ATTTATACCT
*
9061754 GAATACATAGCTAATACCTACATTC
1 GAATACATAGCTAATACATACATTC
*
9061779 GAATATATA--T-ATACAT--ATTC
1 GAATACATAGCTAATACATACATTC
9061799 GAATACATAGCTAATACATACATTC
1 GAATACATAGCTAATACATACATTC
9061824 GAATA
1 GAATA
9061829 TATATATACA
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
20 12 0.29
22 6 0.14
23 7 0.17
25 17 0.40
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.31
Consensus pattern (25 bp):
GAATACATAGCTAATACATACATTC
Found at i:9065646 original size:41 final size:41
Alignment explanation
Indices: 9065480--9065635 Score: 235
Period size: 41 Copynumber: 3.8 Consensus size: 41
9065470 TTTATCGTTA
* * * *
9065480 GTGACATAATTCAGACTTTACGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
9065521 GTGA-A-ATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACA-T-TTCAGACTATAAGTCTAGCAGGCTTAATGCCG
9065562 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
9065603 GTGACACATTTCGGACTATAAGTCTAGCAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
9065636 AAGAGCCGGT
Statistics
Matches: 107, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 102 0.95
42 2 0.02
43 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (41 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
Found at i:9065910 original size:33 final size:32
Alignment explanation
Indices: 9065854--9065917 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
9065844 ATATGTATAT
9065854 ATATATATATATGTTGCATTCGGCATAGGTGG
1 ATATATATATATGTTGCATTCGGCATAGGTGG
* *
9065886 ATATATTTATGTGTATGCATTCGGCATAGGTG
1 ATATATATATATGT-TGCATTCGGCATAGGTG
9065918 AAAATAAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.09, G:0.25, T:0.39
Consensus pattern (32 bp):
ATATATATATATGTTGCATTCGGCATAGGTGG
Found at i:9065934 original size:33 final size:33
Alignment explanation
Indices: 9065861--9065934 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 33
9065851 TATATATATA
* * **
9065861 TATATGT-TGCATTCGGCATAGGTGGATATATT
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
9065893 TATGTGTATGCATTCGGCATAGGTGAAAATAAG
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
9065926 TGTATGTAT
1 TATATGTAT
9065935 CTATGCATTC
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
32 6 0.18
33 28 0.82
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (33 bp):
TATATGTATGCATTCGGCATAGGTGAAAATAAG
Found at i:9072552 original size:34 final size:34
Alignment explanation
Indices: 9072509--9072579 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
9072499 ATGCAAATAT
*
9072509 CATCACTTTATGCTATAGGACTTTAACCAAAGAA
1 CATCACTTTATGCTATAGAACTTTAACCAAAGAA
9072543 CATCACTTTATGCTATAGAACTTTAACCAAAGAA
1 CATCACTTTATGCTATAGAACTTTAACCAAAGAA
9072577 CAT
1 CAT
9072580 TCTTGTTGGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (34 bp):
CATCACTTTATGCTATAGAACTTTAACCAAAGAA
Found at i:9085042 original size:6 final size:6
Alignment explanation
Indices: 9085031--9085081 Score: 102
Period size: 6 Copynumber: 8.5 Consensus size: 6
9085021 AATATATCTC
9085031 TGGCAG TGGCAG TGGCAG TGGCAG TGGCAG TGGCAG TGGCAG TGGCAG
1 TGGCAG TGGCAG TGGCAG TGGCAG TGGCAG TGGCAG TGGCAG TGGCAG
9085079 TGG
1 TGG
9085082 TAAGAGGCAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.16, C:0.16, G:0.51, T:0.18
Consensus pattern (6 bp):
TGGCAG
Found at i:9085723 original size:25 final size:26
Alignment explanation
Indices: 9085680--9085731 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
9085670 TAATATTATT
*
9085680 TTATATTTATATATTATATATAAATAA
1 TTATATTTATATA-TATATAAAAATAA
*
9085707 TTATATTTATCTA-ATATAAAAATAA
1 TTATATTTATATATATATAAAAATAA
9085732 ATGAATATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 11 0.48
27 12 0.52
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (26 bp):
TTATATTTATATATATATAAAAATAA
Found at i:9086049 original size:55 final size:55
Alignment explanation
Indices: 9085984--9086094 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
9085974 ACGCTATAGT
9085984 ATCGCTACAGTATCTAATCTCACCGCCACCGCTATTTTTACACTAACTGCAGGTA
1 ATCGCTACAGTATCTAATCTCACCGCCACCGCTATTTTTACACTAACTGCAGGTA
9086039 ATCGCTACAGTATCTAATCTCACCGCCACCGCTATTTTTACACTAACTGCAGGTA
1 ATCGCTACAGTATCTAATCTCACCGCCACCGCTATTTTTACACTAACTGCAGGTA
9086094 A
1 A
9086095 ACGCACTACC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.29
Consensus pattern (55 bp):
ATCGCTACAGTATCTAATCTCACCGCCACCGCTATTTTTACACTAACTGCAGGTA
Found at i:9086646 original size:22 final size:21
Alignment explanation
Indices: 9086621--9086673 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
9086611 TTATCACGTG
*
9086621 TATTTTTTAAAATATTTTATTA
1 TATTTTTTAAAATA-TTTATCA
*
9086643 TATTTTTATAACATATTTATCA
1 TATTTTT-TAAAATATTTATCA
9086665 T-TTTTTTAA
1 TATTTTTTAA
9086674 TTTTATTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 3 0.11
21 5 0.18
22 14 0.50
23 6 0.21
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (21 bp):
TATTTTTTAAAATATTTATCA
Found at i:9087105 original size:43 final size:44
Alignment explanation
Indices: 9087042--9087174 Score: 161
Period size: 43 Copynumber: 3.1 Consensus size: 44
9087032 CGCTATTGTC
9087042 AACGCCGCTAT-AGATCAAGACCTTTAGCGACGCTTTTTCCAAA
1 AACGCCGCTATAAGATCAAGACCTTTAGCGACGCTTTTTCCAAA
* * *
9087085 AACGCCGCTATAAG-TTAAGACCTTTAGCGGCGCTTTTTCCACA
1 AACGCCGCTATAAGATCAAGACCTTTAGCGACGCTTTTTCCAAA
* * *
9087128 AACACCGCTAT-AGAACAA-ACCTTTAGCG-CGC-TTCTCACAAA
1 AACGCCGCTATAAGATCAAGACCTTTAGCGACGCTTTTTC-CAAA
9087169 AACGCC
1 AACGCC
9087175 ACTAAAAACA
Statistics
Matches: 78, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
40 4 0.05
41 11 0.14
42 12 0.15
43 49 0.63
44 2 0.03
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (44 bp):
AACGCCGCTATAAGATCAAGACCTTTAGCGACGCTTTTTCCAAA
Found at i:9090294 original size:147 final size:147
Alignment explanation
Indices: 9090120--9090384 Score: 417
Period size: 147 Copynumber: 1.8 Consensus size: 147
9090110 AAAATTGTTA
* * * *
9090120 AAAACGCCACAAAAAATTATTTTATTTGGAATAAAACGATACTGTTTTCCTATA-T-AAAATGGC
1 AAAACACCACAAAAAATTATTTCATTTGGAATAAAACGACACTGTTTTCCTATACTAAAAATCGC
9090183 GCTAATTTTTTAAACTAAAATTATTTTTTTGTGGCGTTTTTTATAAAAACGCCGCTATTGCTCAC
66 GCT-ATTTTTTAAACTAAAATTA-TTTTTTGTGGCGTTTTTTATAAAAACGCCGCTATTGCTCAC
9090248 TTTTGAGGCATTTTTATAT
129 TTTTGAGGCATTTTTATAT
* * *
9090267 AAAACACCGCAAAAAATTATTTCATTTGGAATAAAACGACACTGTTTTGCTATACTAAAAATCTC
1 AAAACACCACAAAAAATTATTTCATTTGGAATAAAACGACACTGTTTTCCTATACTAAAAATCGC
* *
9090332 GCTATTTTTTAAAGTAAATTTATTTTTTGTGGCGTTTTTTATAAAAACGCCGC
66 GCTATTTTTTAAACTAAAATTATTTTTTGTGGCGTTTTTTATAAAAACGCCGC
9090385 AAAAAATTAT
Statistics
Matches: 107, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
147 80 0.75
148 18 0.17
149 9 0.08
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.39
Consensus pattern (147 bp):
AAAACACCACAAAAAATTATTTCATTTGGAATAAAACGACACTGTTTTCCTATACTAAAAATCGC
GCTATTTTTTAAACTAAAATTATTTTTTGTGGCGTTTTTTATAAAAACGCCGCTATTGCTCACTT
TTGAGGCATTTTTATAT
Found at i:9090437 original size:108 final size:108
Alignment explanation
Indices: 9090258--9090518 Score: 477
Period size: 108 Copynumber: 2.4 Consensus size: 108
9090248 TTTTGAGGCA
*
9090258 TTTTTATATAAAACACCGCAAAAAATTATTTCATTTGGAATAAAACGACACTGTTTTGCTATACT
1 TTTTTATA-AAAACGCCGCAAAAAATTATTTCATTTGGAATAAAACGACACTGTTTTGCTATACT
9090323 AAAAATCTCGCTATTTTTTAAAGTAAATTTATTTTTTGTGGCGT
65 AAAAATCTCGCTATTTTTTAAAGTAAATTTATTTTTTGTGGCGT
9090367 TTTTTATAAAAACGCCGCAAAAAATTATTTCATTTGGAATAAAACGACACTGTTTTGCTATACTA
1 TTTTTATAAAAACGCCGCAAAAAATTATTTCATTTGGAATAAAACGACACTGTTTTGCTATACTA
9090432 AAAATCTCGCTATTTTTTAAAGTAAATTTATTTTTTGTGGCGT
66 AAAATCTCGCTATTTTTTAAAGTAAATTTATTTTTTGTGGCGT
* * *
9090475 TTTTTATAAAAACGCCGCAAAAAATTATTTTATTTTGAACAAAA
1 TTTTTATAAAAACGCCGCAAAAAATTATTTCATTTGGAATAAAA
9090519 TAACATTTTA
Statistics
Matches: 148, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
108 140 0.95
109 8 0.05
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (108 bp):
TTTTTATAAAAACGCCGCAAAAAATTATTTCATTTGGAATAAAACGACACTGTTTTGCTATACTA
AAAATCTCGCTATTTTTTAAAGTAAATTTATTTTTTGTGGCGT
Found at i:9090803 original size:14 final size:14
Alignment explanation
Indices: 9090784--9090847 Score: 67
Period size: 14 Copynumber: 4.5 Consensus size: 14
9090774 ACCCTTGAAT
9090784 CCCTAAATCCTAAC
1 CCCTAAATCCTAAC
9090798 CCCTAAATCACTAA-
1 CCCTAAATC-CTAAC
* *
9090812 CTCTTAATCCTTAAC
1 CCCTAAATCC-TAAC
* *
9090827 CCCTAACTACTAAC
1 CCCTAAATCCTAAC
9090841 CCCTAAA
1 CCCTAAA
9090848 CCTTAAATCC
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
13 1 0.03
14 29 0.73
15 10 0.25
ACGTcount: A:0.36, C:0.39, G:0.00, T:0.25
Consensus pattern (14 bp):
CCCTAAATCCTAAC
Found at i:9090851 original size:28 final size:29
Alignment explanation
Indices: 9090784--9090853 Score: 81
Period size: 28 Copynumber: 2.4 Consensus size: 29
9090774 ACCCTTGAAT
9090784 CCCTAAATCC-TAACCCCTAAATCACTAAC
1 CCCTAAA-CCTTAACCCCTAAATCACTAAC
* * * *
9090813 TCTTAATCCTTAACCCCTAACT-ACTAAC
1 CCCTAAACCTTAACCCCTAAATCACTAAC
9090841 CCCTAAACCTTAA
1 CCCTAAACCTTAA
9090854 ATCCCGACCC
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
28 18 0.55
29 15 0.45
ACGTcount: A:0.36, C:0.39, G:0.00, T:0.26
Consensus pattern (29 bp):
CCCTAAACCTTAACCCCTAAATCACTAAC
Found at i:9091107 original size:22 final size:21
Alignment explanation
Indices: 9091060--9091107 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
9091050 ACCCCAGCCT
*
9091060 TTAAACCATAAATCATAACCC
1 TTAAACCATAAATCATAAACC
*
9091081 CTAAACC-TATAATCCATAAACC
1 TTAAACCATA-AAT-CATAAACC
9091103 TTAAA
1 TTAAA
9091108 ATGGTAACAC
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 2 0.09
21 9 0.41
22 11 0.50
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.25
Consensus pattern (21 bp):
TTAAACCATAAATCATAAACC
Found at i:9091389 original size:41 final size:41
Alignment explanation
Indices: 9091332--9091411 Score: 124
Period size: 41 Copynumber: 2.0 Consensus size: 41
9091322 ATTTAAAATC
* *
9091332 CCTGAGTATTAGCGGCGCTTTCCCAAAAACGTCGCTAAAGA
1 CCTGAGCATTAGCGGCGCTTTCCCAAAAACGCCGCTAAAGA
**
9091373 CCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAA
1 CCTGAGCATTAGCGGCGCTTTCCCAAAAACGCCGCTAAA
9091412 TCCCCGAAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (41 bp):
CCTGAGCATTAGCGGCGCTTTCCCAAAAACGCCGCTAAAGA
Found at i:9091625 original size:73 final size:73
Alignment explanation
Indices: 9091384--9091610 Score: 395
Period size: 73 Copynumber: 3.1 Consensus size: 73
9091374 CTGAGCATTA
* * * *
9091384 GCGGCGCTTTCTT-AAAAACGCCGCTAAATCCCCGAAAGCT-CAAAAACGGCATCGTTGGGTTTA
1 GCGGCGC-TTCTTAAAAAACGCCGCTAAATCACCGAAAGCTAAAAAAACGGCGTCGTTGGGCTTA
9091447 GGTTTTTTT
65 GGTTTTTTT
9091456 GCGGCGCTTCTTAAAAAACGCCGCTAAATCACCGAAAGCTAAAAAAACGGCGTCGTTGGGCTTAG
1 GCGGCGCTTCTTAAAAAACGCCGCTAAATCACCGAAAGCTAAAAAAACGGCGTCGTTGGGCTTAG
9091521 GTTTTTTT
66 GTTTTTTT
9091529 GCGGCGCTTCTTAAAAAACGCCGCTAAATCACCGAAAGCTAAAAAAACGGCGTCGTTGGGCTTAG
1 GCGGCGCTTCTTAAAAAACGCCGCTAAATCACCGAAAGCTAAAAAAACGGCGTCGTTGGGCTTAG
9091594 GTTTTTTT
66 GTTTTTTT
9091602 GCGGCGCTT
1 GCGGCGCTT
9091611 TCCCAAAAAC
Statistics
Matches: 149, Mismatches: 4, Indels: 3
0.96 0.03 0.02
Matches are distributed among these distances:
71 5 0.03
72 33 0.22
73 111 0.74
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (73 bp):
GCGGCGCTTCTTAAAAAACGCCGCTAAATCACCGAAAGCTAAAAAAACGGCGTCGTTGGGCTTAG
GTTTTTTT
Found at i:9091660 original size:114 final size:113
Alignment explanation
Indices: 9091529--9091738 Score: 341
Period size: 114 Copynumber: 1.8 Consensus size: 113
9091519 AGGTTTTTTT
*
9091529 GCGGCGCTTCTTAAAAAACGCCGCTAAATCACCGAAAGCTAAAAAAACGGCGTCGTTGGGCTTAG
1 GCGGCGCTTCTTAAAAAACGCCGCTAAATCACCGAAAGCTAAAAAAACGGCATCGTTGGGCTTAG
*
9091594 GTTTTTTTGCGGCGCTTTCCCAAAAACGCCGCCAAAGACCTGAACATTA
66 GTTTTTTGGCGGCGC-TTCCCAAAAACGCCGCCAAAGACCTGAACATTA
* * * *
9091643 GCGGCGCTTTCTT-AAAAACGCCGCTAGATCCCCGAAAGCTCAGAAAACGGCATCGTTGGGCTTA
1 GCGGCGC-TTCTTAAAAAACGCCGCTAAATCACCGAAAGCTAAAAAAACGGCATCGTTGGGCTTA
9091707 GGTTTTTTGGCGGCGCTTCCCAAAAACGCCGC
65 GGTTTTTTGGCGGCGCTTCCCAAAAACGCCGC
9091739 TAAATCCCCG
Statistics
Matches: 89, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
113 16 0.18
114 68 0.76
115 5 0.06
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.22
Consensus pattern (113 bp):
GCGGCGCTTCTTAAAAAACGCCGCTAAATCACCGAAAGCTAAAAAAACGGCATCGTTGGGCTTAG
GTTTTTTGGCGGCGCTTCCCAAAAACGCCGCCAAAGACCTGAACATTA
Found at i:9091737 original size:72 final size:73
Alignment explanation
Indices: 9091656--9091815 Score: 250
Period size: 72 Copynumber: 2.2 Consensus size: 73
9091646 GCGCTTTCTT
* * * *
9091656 AAAAACGCCGCTAGATCCCCGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTTTTTTGGCGGC
1 AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCAGCGTTGGGCCTAGATTTTTTGGCGGC
9091721 GCTT-CCC
66 GCTTCCCC
* * *
9091728 AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAGCGGCGGCGTTGGGCCTAGATTTTTTTGCGGC
1 AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCAGCGTTGGGCCTAGATTTTTTGGCGGC
9091793 GCTTCCCC
66 GCTTCCCC
9091801 AAAAACGCCGCTAAA
1 AAAAACGCCGCTAAA
9091816 GACCTGAGCA
Statistics
Matches: 80, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
72 62 0.77
73 18 0.22
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (73 bp):
AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCAGCGTTGGGCCTAGATTTTTTGGCGGC
GCTTCCCC
Found at i:9091807 original size:259 final size:259
Alignment explanation
Indices: 9091343--9091815 Score: 768
Period size: 259 Copynumber: 1.8 Consensus size: 259
9091333 CTGAGTATTA
* * *
9091343 GCGGCGCTTTCCCAAAAACGTCGCTAAAGACCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGC
1 GCGGCGCTTTCCCAAAAACGCCGCCAAAGACCTGAACATTAGCGGCGCTTTCTTAAAAACGCCGC
* * *
9091408 TAAATCCCCGAAAGCTCAAAAACGGCATCGTTGGGTTTAGGTTTTTTTGCGGCGCTTCTTAAAAA
66 TAAATCCCCGAAAGCTCAAAAACGGCATCGTTGGGCTTAGGTTTTTTGGCGGCGCTTCTCAAAAA
* * *
9091473 ACGCCGCTAAATCACCGAAAGCTAAAAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTT
131 ACGCCGCTAAATCACCGAAAGCTAAAAAAACGGCGGCGTTGGGCCTAGATTTTTTTGCGGCGCTT
**
9091538 CTTAAAAAACGCCGCTAAATCACCGAAAGCTAAAAAAACGGCGTCGTTGGGCTTAGGTTTTTTT
196 CCCAAAAAACGCCGCTAAATCACCGAAAGCTAAAAAAACGGCGTCGTTGGGCTTAGGTTTTTTT
9091602 GCGGCGCTTTCCCAAAAACGCCGCCAAAGACCTGAACATTAGCGGCGCTTTCTTAAAAACGCCGC
1 GCGGCGCTTTCCCAAAAACGCCGCCAAAGACCTGAACATTAGCGGCGCTTTCTTAAAAACGCCGC
* *
9091667 TAGATCCCCGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTTTTTTGGCGGCGCTTC-CCAAA
66 TAAATCCCCGAAAGCTCA-AAAACGGCATCGTTGGGCTTAGGTTTTTTGGCGGCGCTTCTCAAAA
* * * *
9091731 AACGCCGCTAAATCCCCGAAAGCTCAGAAAGCGGCGGCGTTGGGCCTAGATTTTTTTGCGGCGCT
130 AACGCCGCTAAATCACCGAAAGCTAAAAAAACGGCGGCGTTGGGCCTAGATTTTTTTGCGGCGCT
*
9091796 TCCCCAAAAACGCCGCTAAA
195 TCCCAAAAAACGCCGCTAAA
9091816 GACCTGAGCA
Statistics
Matches: 195, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
259 157 0.81
260 38 0.19
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.23
Consensus pattern (259 bp):
GCGGCGCTTTCCCAAAAACGCCGCCAAAGACCTGAACATTAGCGGCGCTTTCTTAAAAACGCCGC
TAAATCCCCGAAAGCTCAAAAACGGCATCGTTGGGCTTAGGTTTTTTGGCGGCGCTTCTCAAAAA
ACGCCGCTAAATCACCGAAAGCTAAAAAAACGGCGGCGTTGGGCCTAGATTTTTTTGCGGCGCTT
CCCAAAAAACGCCGCTAAATCACCGAAAGCTAAAAAAACGGCGTCGTTGGGCTTAGGTTTTTTT
Found at i:9091809 original size:186 final size:186
Alignment explanation
Indices: 9091456--9091909 Score: 705
Period size: 186 Copynumber: 2.4 Consensus size: 186
9091446 AGGTTTTTTT
* *
9091456 GCGGCGC-TTCTTAAAAAACGCCGCTAAATCACCGAAAGCTAAAAAAACGGCGTCGTTGGGCTTA
1 GCGGCGCTTTCTT-AAAAACGCCGCTAAATCACCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTA
* *
9091520 GGTTTTTTTGCGGCGCTTCTTAAAAAACGCCGCTAAATCACCGAAAGCTAAAAAAACGGCGTCGT
65 GG-TTTTTTGCGGCGCTTCTCAAAAAACGCCGCTAAATCACCGAAAGCTAAAAAAACGGCGGCGT
* * *
9091585 TGGGCTTAGGTTTTTTTGCGGCGCTTTCCCAAAAACGCCGCCAAAGACCTGAACATTA
129 TGGGCCTAGATTTTTTTGCGGCGCTTCCCCAAAAACGCCGCCAAAGACCTGAACATTA
* * *
9091643 GCGGCGCTTTCTTAAAAACGCCGCTAGATCCCCGAAAGCTCAGAAAACGGCATCGTTGGGCTTAG
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCACCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG
* * * * *
9091708 GTTTTTTGGCGGCGCTTC-CCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAGCGGCGGCGTT
66 GTTTTTT-GCGGCGCTTCTCAAAAAACGCCGCTAAATCACCGAAAGCTAAAAAAACGGCGGCGTT
* *
9091772 GGGCCTAGATTTTTTTGCGGCGCTTCCCCAAAAACGCCGCTAAAGACCTGAGCATTA
130 GGGCCTAGATTTTTTTGCGGCGCTTCCCCAAAAACGCCGCCAAAGACCTGAACATTA
*
9091829 GCGGCGCTTTCTTAAAAACGCCGCTAAATCACTGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCACCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG
9091894 GTTTTTTGCGGCGCTT
66 GTTTTTTGCGGCGCTT
9091910 TCTGGAAAAT
Statistics
Matches: 244, Mismatches: 21, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
185 9 0.04
186 165 0.68
187 65 0.27
188 5 0.02
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.23
Consensus pattern (186 bp):
GCGGCGCTTTCTTAAAAACGCCGCTAAATCACCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG
GTTTTTTGCGGCGCTTCTCAAAAAACGCCGCTAAATCACCGAAAGCTAAAAAAACGGCGGCGTTG
GGCCTAGATTTTTTTGCGGCGCTTCCCCAAAAACGCCGCCAAAGACCTGAACATTA
Found at i:9095760 original size:51 final size:50
Alignment explanation
Indices: 9095658--9095818 Score: 286
Period size: 51 Copynumber: 3.2 Consensus size: 50
9095648 TGAGTACTTC
*
9095658 TGATCAGTGACAAGTGATAAGTGGTAGTTTAGCTACACTTATCTGATCAG
1 TGATAAGTGACAAGTGATAAGTGGTAGTTTAGCTACACTTATCTGATCAG
9095708 TGATAAGTGACAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAG
1 TGATAAGTGACAAGTGATAAGTGGTAG-TTTAGCTACACTTATCTGATCAG
*
9095759 TGATAAGTGACAAGTGATAAGTGGTAGCTTTAGCTGCACTTATCTGATCAG
1 TGATAAGTGACAAGTGATAAGTGGTAG-TTTAGCTACACTTATCTGATCAG
9095810 TGATAAGTG
1 TGATAAGTG
9095819 GTAGCTTAGT
Statistics
Matches: 107, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
50 26 0.24
51 81 0.76
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.32
Consensus pattern (50 bp):
TGATAAGTGACAAGTGATAAGTGGTAGTTTAGCTACACTTATCTGATCAG
Found at i:9095836 original size:87 final size:88
Alignment explanation
Indices: 9095720--9095905 Score: 293
Period size: 87 Copynumber: 2.1 Consensus size: 88
9095710 ATAAGTGACA
* *
9095720 AGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGATAAGTGACAAGTGATAAGTGGTA
1 AGTGATAAGTGGTAGTCTTAGCTACACTTATCTGATCAGTGACAAGTGACAAGTGATAAGTGGTA
* *
9095785 GCTTTAGCTGCACTTATCTGATC
66 GCTTTAGCTACACTTATCTAATC
* * *
9095808 AGTGATAAGTGGTAG-CTTAGTTATACTTATCTGATCGGTGACAAGTGACAAGTGATAAGTGGTA
1 AGTGATAAGTGGTAGTCTTAGCTACACTTATCTGATCAGTGACAAGTGACAAGTGATAAGTGGTA
9095872 GCTTTAGCTACACTTATCTAATC
66 GCTTTAGCTACACTTATCTAATC
*
9095895 AGTGACAAGTG
1 AGTGATAAGTG
9095906 ACAAGTGATA
Statistics
Matches: 90, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
87 75 0.83
88 15 0.17
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (88 bp):
AGTGATAAGTGGTAGTCTTAGCTACACTTATCTGATCAGTGACAAGTGACAAGTGATAAGTGGTA
GCTTTAGCTACACTTATCTAATC
Found at i:9095843 original size:36 final size:37
Alignment explanation
Indices: 9095771--9095854 Score: 116
Period size: 36 Copynumber: 2.3 Consensus size: 37
9095761 ATAAGTGACA
*
9095771 AGTGATAAGTGGTAGCTTTAGCTGCACTTATCTGATC
1 AGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATC
* *
9095808 AGTGATAAGTGGTAGC-TTAGTTATACTTATCTGATC
1 AGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATC
* *
9095844 GGTGACAAGTG
1 AGTGATAAGTG
9095855 ACAAGTGATA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 26 0.62
37 16 0.38
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.35
Consensus pattern (37 bp):
AGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATC
Found at i:9095905 original size:51 final size:50
Alignment explanation
Indices: 9095808--9095916 Score: 173
Period size: 51 Copynumber: 2.2 Consensus size: 50
9095798 TTATCTGATC
* * * *
9095808 AGTGATAAGTGGTAGCTTAGTTATACTTATCTGATCGGTGACAAGTGACA
1 AGTGATAAGTGGTAGCTTAGCTACACTTATCTAATCAGTGACAAGTGACA
9095858 AGTGATAAGTGGTAGCTTTAGCTACACTTATCTAATCAGTGACAAGTGACA
1 AGTGATAAGTGGTAGC-TTAGCTACACTTATCTAATCAGTGACAAGTGACA
9095909 AGTGATAA
1 AGTGATAA
9095917 ATGTGATCCA
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
50 16 0.30
51 38 0.70
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (50 bp):
AGTGATAAGTGGTAGCTTAGCTACACTTATCTAATCAGTGACAAGTGACA
Found at i:9098507 original size:30 final size:30
Alignment explanation
Indices: 9098473--9098537 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 30
9098463 TTACGAGGAT
*
9098473 GTTCAAGAACTTGAAAAGACACGATATTTC
1 GTTCAAGAACTTGAAAAGACACGATATCTC
* * ** *
9098503 GTTCAGGAGCTTGGGAAGACTCGATATCTC
1 GTTCAAGAACTTGAAAAGACACGATATCTC
9098533 GTTCA
1 GTTCA
9098538 GGAGCTTAGG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (30 bp):
GTTCAAGAACTTGAAAAGACACGATATCTC
Found at i:9098538 original size:30 final size:30
Alignment explanation
Indices: 9098488--9098551 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
9098478 AGAACTTGAA
* *
9098488 AAGACACGATATTTCGTTCAGGAGCTTGGG
1 AAGACACGATATCTCGTTCAGGAGCTTAGG
*
9098518 AAGACTCGATATCTCGTTCAGGAGCTTAGG
1 AAGACACGATATCTCGTTCAGGAGCTTAGG
9098548 AAGA
1 AAGA
9098552 TTCTATATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (30 bp):
AAGACACGATATCTCGTTCAGGAGCTTAGG
Found at i:9100922 original size:26 final size:26
Alignment explanation
Indices: 9100769--9100927 Score: 109
Period size: 26 Copynumber: 6.4 Consensus size: 26
9100759 TGGCTATCCG
* *
9100769 GAGC-TCCTGATTAAAGGCTCTTCGT
1 GAGCTTCCTGATTAATGGCTCTTTGT
* ** * *
9100794 GAGCTTTCTGATTAAAAGTTTTTTGT
1 GAGCTTCCTGATTAATGGCTCTTTGT
* *
9100820 GAACTTCCTGATT-ATGGCTC-TTAT
1 GAGCTTCCTGATTAATGGCTCTTTGT
* ****
9100844 GAGCTTCCTG-TTATATAGC-CAGAAT
1 GAGCTTCCTGATTA-ATGGCTCTTTGT
*
9100869 AAGCTTCCTGA-T-A-GGCTCTTTGT
1 GAGCTTCCTGATTAATGGCTCTTTGT
*
9100892 TAGCTTCCTGATTAATGGCTCTTTGT
1 GAGCTTCCTGATTAATGGCTCTTTGT
9100918 GAGCTTCCTG
1 GAGCTTCCTG
9100928 TTATATAACT
Statistics
Matches: 101, Mismatches: 24, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
22 2 0.02
23 15 0.15
24 14 0.14
25 24 0.24
26 46 0.46
ACGTcount: A:0.20, C:0.19, G:0.21, T:0.40
Consensus pattern (26 bp):
GAGCTTCCTGATTAATGGCTCTTTGT
Found at i:9103049 original size:19 final size:19
Alignment explanation
Indices: 9103009--9103059 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
9102999 ATATAAATCA
*
9103009 TTATTAAAAA-TATAAAAT
1 TTATAAAAAATTATAAAAT
*
9103027 TTATAAAAAAATTATGAAA-
1 TTAT-AAAAAATTATAAAAT
*
9103046 TTATTAAAAATTAT
1 TTATAAAAAATTAT
9103060 CTAAGTTCAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
18 13 0.46
19 9 0.32
20 6 0.21
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (19 bp):
TTATAAAAAATTATAAAAT
Found at i:9103057 original size:18 final size:18
Alignment explanation
Indices: 9102992--9103059 Score: 68
Period size: 19 Copynumber: 3.7 Consensus size: 18
9102982 TATTTTAAAA
9102992 ATTAAAAA-TATAAATCATT
1 ATTAAAAATTATAAA--ATT
9103011 ATTAAAAA-TATAAAATTT
1 ATTAAAAATTATAAAA-TT
* *
9103029 ATAAAAAAATTATGAAATT
1 AT-TAAAAATTATAAAATT
9103048 ATTAAAAATTAT
1 ATTAAAAATTAT
9103060 CTAAGTTCAT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
17 1 0.02
18 13 0.30
19 23 0.53
20 6 0.14
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (18 bp):
ATTAAAAATTATAAAATT
Found at i:9104752 original size:14 final size:14
Alignment explanation
Indices: 9104733--9104761 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
9104723 ATCAAGAAAA
9104733 AAATTATGTATAAG
1 AAATTATGTATAAG
9104747 AAATTATGTATAAG
1 AAATTATGTATAAG
9104761 A
1 A
9104762 CTTACAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (14 bp):
AAATTATGTATAAG
Found at i:9108195 original size:21 final size:21
Alignment explanation
Indices: 9108145--9108206 Score: 56
Period size: 21 Copynumber: 2.9 Consensus size: 21
9108135 CTAACTCAAC
*
9108145 CCCAAATCTTTAAACCCTAAAT
1 CCCAAA-CTCTAAACCCTAAAT
* *
9108167 CTCTAACTCTAAACCTCT-AAT
1 CCCAAACTCTAAACC-CTAAAT
9108188 CCCAAACTC-ATAACCCTAA
1 CCCAAACTCTA-AACCCTAA
9108207 TTACCCCAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
20 3 0.09
21 23 0.72
22 6 0.19
ACGTcount: A:0.39, C:0.35, G:0.00, T:0.26
Consensus pattern (21 bp):
CCCAAACTCTAAACCCTAAAT
Found at i:9108333 original size:14 final size:14
Alignment explanation
Indices: 9108310--9108380 Score: 65
Period size: 14 Copynumber: 5.0 Consensus size: 14
9108300 AACCCGATCT
*
9108310 TTAACCCCTAAACC
1 TTAAACCCTAAACC
*
9108324 TTAAATCCTAAA-C
1 TTAAACCCTAAACC
*
9108337 TGTTAACCCTAAACC
1 T-TAAACCCTAAACC
9108352 TTAAAACCCTAAA-C
1 TT-AAACCCTAAACC
*
9108366 TTATAACCCTCAACC
1 TTA-AACCCTAAACC
9108381 CCTAACATAT
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
13 3 0.07
14 31 0.67
15 12 0.26
ACGTcount: A:0.39, C:0.34, G:0.01, T:0.25
Consensus pattern (14 bp):
TTAAACCCTAAACC
Found at i:9108362 original size:29 final size:27
Alignment explanation
Indices: 9108308--9108380 Score: 92
Period size: 29 Copynumber: 2.6 Consensus size: 27
9108298 CTAACCCGAT
*
9108308 CTTTAACCCCTAAACCTTAAATCCTAAA
1 CTTTAA-CCCTAAACCTTAAACCCTAAA
9108336 CTGTTAACCCTAAACCTTAAAACCCTAAA
1 CT-TTAACCCTAAACCTT-AAACCCTAAA
*
9108365 CTTATAACCCTCAACC
1 CTT-TAACCCTAAACC
9108381 CCTAACATAT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
28 14 0.35
29 26 0.65
ACGTcount: A:0.38, C:0.34, G:0.01, T:0.26
Consensus pattern (27 bp):
CTTTAACCCTAAACCTTAAACCCTAAA
Found at i:9108404 original size:21 final size:21
Alignment explanation
Indices: 9108358--9108407 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
9108348 AACCTTAAAA
*
9108358 CCCTAAACTTATAACCCTCAAC
1 CCCT-AACATATAACCCTCAAC
*
9108380 CCCTAACATATAA-CCTCTAAT
1 CCCTAACATATAACCCTC-AAC
9108401 CCCTAAC
1 CCCTAAC
9108408 CCCTAAACCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 4 0.16
21 17 0.68
22 4 0.16
ACGTcount: A:0.36, C:0.40, G:0.00, T:0.24
Consensus pattern (21 bp):
CCCTAACATATAACCCTCAAC
Found at i:9108956 original size:16 final size:15
Alignment explanation
Indices: 9108930--9108962 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
9108920 TTATCCATTT
9108930 TTAAAAAATATTCAA
1 TTAAAAAATATTCAA
9108945 TTAAAAATATATTCAA
1 TTAAAAA-ATATTCAA
9108961 TT
1 TT
9108963 TTAATTAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (15 bp):
TTAAAAAATATTCAA
Found at i:9109087 original size:42 final size:41
Alignment explanation
Indices: 9109031--9109211 Score: 254
Period size: 41 Copynumber: 4.4 Consensus size: 41
9109021 GCGCTTTACA
* *
9109031 AAAAATGCCACTAAAGGTCTGCGCATTAGCGGCGCTTCATG
1 AAAAATGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTCTTG
* * *
9109072 AAAAAATGCCGCTAAAGGTCAGTGCATTAGCGGCGCTTCCTG
1 -AAAAATGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTCTTG
* *
9109114 AAAAACGCCGCTAAAGGTCTGTGCATTAGCGGCGCTTCTTG
1 AAAAATGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTCTTG
** *
9109155 AAAAATGCCGCTAAAGGTCCACGCATTAGCGACGCTTCTTG
1 AAAAATGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTCTTG
*
9109196 AAAAACGCCGCTAAAG
1 AAAAATGCCGCTAAAG
9109212 ACCCACAAGG
Statistics
Matches: 126, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
41 89 0.71
42 37 0.29
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.21
Consensus pattern (41 bp):
AAAAATGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTCTTG
Found at i:9109108 original size:83 final size:83
Alignment explanation
Indices: 9109018--9109191 Score: 237
Period size: 83 Copynumber: 2.1 Consensus size: 83
9109008 ATATGTTTTT
*
9109018 GCGGCGCTTTAC-AAAAAATGCCACTAAAGGTCTGCGCATTAGCGGCGCTTCATGAAAAAATGCC
1 GCGGCGCTTTACTAAAAAACGCCACTAAAGGTCTGCGCATTAGCGGCGCTTCATG-AAAAATGCC
*
9109082 GCTAAAGGT-CAGTGCATTA
65 GCTAAAGGTCCA-CGCATTA
* * * * *
9109101 GCGGCGC-TTCCTGAAAAACGCCGCTAAAGGTCTGTGCATTAGCGGCGCTTCTTGAAAAATGCCG
1 GCGGCGCTTTACTAAAAAACGCCACTAAAGGTCTGCGCATTAGCGGCGCTTCATGAAAAATGCCG
9109165 CTAAAGGTCCACGCATTA
66 CTAAAGGTCCACGCATTA
*
9109183 GCGACGCTT
1 GCGGCGCTT
9109192 CTTGAAAAAC
Statistics
Matches: 80, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
82 33 0.41
83 47 0.59
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.22
Consensus pattern (83 bp):
GCGGCGCTTTACTAAAAAACGCCACTAAAGGTCTGCGCATTAGCGGCGCTTCATGAAAAATGCCG
CTAAAGGTCCACGCATTA
Found at i:9114909 original size:20 final size:20
Alignment explanation
Indices: 9114871--9114909 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
9114861 TCGTATAAAC
*
9114871 AAAAATATTATTTAAAAAAT
1 AAAAATATTATATAAAAAAT
9114891 AAAAATATT-TATAAGAAAA
1 AAAAATATTATATAA-AAAA
9114910 GAGTATATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (20 bp):
AAAAATATTATATAAAAAAT
Found at i:9122268 original size:83 final size:82
Alignment explanation
Indices: 9122109--9122270 Score: 218
Period size: 83 Copynumber: 2.0 Consensus size: 82
9122099 TTACGTTTTG
* *** * *
9122109 TAAAAGTGGTTAATTTTTAATTTTGGTTTTTTTAATATGTTTAAATTTGATATTTAATCCTTATA
1 TAAAAGTGGTTAATTTTCAATTTTGGTTCAATCAATATGCTTAAATTTGATATTTAATCCTTATA
*
9122174 TTTTAATTTCTAACCTA
66 ATTTAATTTCTAACCTA
* *
9122191 TAAAAGTGGTTAATTTTCAGTTTTGG-TCAATCAATATGCTTAAATTTGAGATTTTTAATCCTTA
1 TAAAAGTGGTTAATTTTCAATTTTGGTTCAATCAATATGCTTAAATTT--GATATTTAATCCTTA
9122255 TAATTTAATTTCTAAC
64 TAATTTAATTTCTAAC
9122271 ATAATTTGGT
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
81 16 0.23
82 24 0.35
83 29 0.42
ACGTcount: A:0.31, C:0.08, G:0.10, T:0.51
Consensus pattern (82 bp):
TAAAAGTGGTTAATTTTCAATTTTGGTTCAATCAATATGCTTAAATTTGATATTTAATCCTTATA
ATTTAATTTCTAACCTA
Found at i:9123404 original size:151 final size:151
Alignment explanation
Indices: 9123126--9123425 Score: 528
Period size: 151 Copynumber: 2.0 Consensus size: 151
9123116 TGGGTGAAGC
* * *
9123126 GGAATTTTATTTATACAGCATTTTATTTATACGATGAACTTAAAAAACTAATTTTTATTATATTT
1 GGAATTTTATTTATACAACATTTTATTTATACGATGAACTTAAAAAAATAATTTTCATTATATTT
* * *
9123191 AAGAATTTTTTACATTCACTAATCATATTAGATTTTGATTAAATTTGAAGTCGAATAAATTCGGA
66 AAGAACTTTTCACATTCACTAATCACATTAGATTTTGATTAAATTTGAAGTCGAATAAATTCGGA
9123256 TCCTTTAAATAAGAAAAAAGT
131 TCCTTTAAATAAGAAAAAAGT
9123277 GGAATTTTATTTATACAACATTTTATTTATACGATGAACTTAAAAAAATAATTTTCATTATATTT
1 GGAATTTTATTTATACAACATTTTATTTATACGATGAACTTAAAAAAATAATTTTCATTATATTT
* *
9123342 AAGAACTTTTCACATTCACTAATCACATTAGATTTTGATTATATTTGAAGTCGAATAGATTCGGA
66 AAGAACTTTTCACATTCACTAATCACATTAGATTTTGATTAAATTTGAAGTCGAATAAATTCGGA
9123407 TCCTTTAAATAAGAAAAAA
131 TCCTTTAAATAAGAAAAAA
9123426 AGTTCTCTCA
Statistics
Matches: 141, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
151 141 1.00
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.41
Consensus pattern (151 bp):
GGAATTTTATTTATACAACATTTTATTTATACGATGAACTTAAAAAAATAATTTTCATTATATTT
AAGAACTTTTCACATTCACTAATCACATTAGATTTTGATTAAATTTGAAGTCGAATAAATTCGGA
TCCTTTAAATAAGAAAAAAGT
Found at i:9125485 original size:15 final size:16
Alignment explanation
Indices: 9125462--9125517 Score: 78
Period size: 17 Copynumber: 3.4 Consensus size: 16
9125452 TTTTTATGTT
*
9125462 TTATATATATTATTTTA
1 TTATATATA-TATTATA
9125479 TTATATAATATATTATA
1 TTATAT-ATATATTATA
9125496 TTATAT-TATATTATA
1 TTATATATATATTATA
9125511 TTATATA
1 TTATATA
9125518 AATTAAATAG
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
15 15 0.42
17 18 0.50
18 3 0.08
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TTATATATATATTATA
Found at i:9125489 original size:5 final size:5
Alignment explanation
Indices: 9125462--9125516 Score: 71
Period size: 5 Copynumber: 11.2 Consensus size: 5
9125452 TTTTTATGTT
9125462 TTATA -TATA TTAT- TT-TA TTATA TAATATA TTATA TTATA TTATA TTATA
1 TTATA TTATA TTATA TTATA TTATA T--TATA TTATA TTATA TTATA TTATA
9125511 TTATA T
1 TTATA T
9125517 AAATTAAATA
Statistics
Matches: 45, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
3 1 0.02
4 8 0.18
5 31 0.69
7 5 0.11
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TTATA
Done.