Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 35 of 144
Found at i:10489360 original size:51 final size:51
Alignment explanation
Indices: 10489292--10489403 Score: 188
Period size: 51 Copynumber: 2.2 Consensus size: 51
10489282 ATCACATTTA
*
10489292 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
1 TCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
* *
10489343 TCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCACTTG
1 TCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
*
10489394 TCACTGATCA
1 TCACTTATCA
10489404 GAAGTACTCA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (51 bp):
TCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
Found at i:10493889 original size:11 final size:11
Alignment explanation
Indices: 10493873--10493906 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
10493863 TTCCCCCCTC
10493873 CCTTCTCTCTT
1 CCTTCTCTCTT
10493884 CCTTCTCTCTT
1 CCTTCTCTCTT
*
10493895 CCCTCTCTCTT
1 CCTTCTCTCTT
10493906 C
1 C
10493907 TTTTTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (11 bp):
CCTTCTCTCTT
Found at i:10494392 original size:6 final size:6
Alignment explanation
Indices: 10494392--10494425 Score: 59
Period size: 6 Copynumber: 5.5 Consensus size: 6
10494382 TTATTAGTAT
10494392 TATTAG TATTAG TATTAG TATTATG TATTAG TAT
1 TATTAG TATTAG TATTAG TATTA-G TATTAG TAT
10494426 ATATTTTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (6 bp):
TATTAG
Found at i:10494849 original size:64 final size:64
Alignment explanation
Indices: 10494775--10494906 Score: 164
Period size: 64 Copynumber: 2.1 Consensus size: 64
10494765 GTCGTATTAT
*
10494775 TATATTTTAATATTA-TA-TTATATAATTATA-TA-TACATATATCTTTTATATATATTATCATT
1 TATATTTTAATATTATTAGTTATAT-ATTACACTATTACATATAT-TTTTATA-ATATTAT-ATT
10494836 GTA
62 GTA
* * *
10494839 TATATTTTAATATTATTAGTTATATTTTACACTATTATATATATTTTTCTAATATTATATTGTA
1 TATATTTTAATATTATTAGTTATATATTACACTATTACATATATTTTTATAATATTATATTGTA
10494903 TATA
1 TATA
10494907 CTGTCGTTTA
Statistics
Matches: 60, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
64 25 0.42
65 13 0.22
66 14 0.23
67 8 0.13
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (64 bp):
TATATTTTAATATTATTAGTTATATATTACACTATTACATATATTTTTATAATATTATATTGTA
Found at i:10494881 original size:19 final size:18
Alignment explanation
Indices: 10494837--10494896 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 18
10494827 ATTATCATTG
10494837 TATATATTTTAATATTAT
1 TATATATTTTAATATTAT
10494855 TAGTTATATTTTACACTATTAT
1 TA--TATATTTTA-A-TATTAT
*
10494877 ATATATTTTTCTAATATTAT
1 -TATATATTT-TAATATTAT
10494897 ATTGTATATA
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
18 2 0.06
20 15 0.43
21 8 0.23
22 8 0.23
23 2 0.06
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (18 bp):
TATATATTTTAATATTAT
Found at i:10495340 original size:38 final size:37
Alignment explanation
Indices: 10495256--10495350 Score: 97
Period size: 38 Copynumber: 2.5 Consensus size: 37
10495246 TATACGTACT
*
10495256 TATACATACTTAAATATATTTTTCATATTTCATAATTC
1 TATACATACTTAAATATATTTTGCATATTT-ATAATTC
* *
10495294 T-TATATACTTACATATATTTATGCATATTT-TACA-TC
1 TATACATACTTAAATATATTT-TGCATATTTATA-ATTC
*
10495330 ATATACATACTTATATATATT
1 -TATACATACTTAAATATATT
10495351 CTTTATATTC
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
36 4 0.08
37 19 0.40
38 25 0.52
ACGTcount: A:0.37, C:0.13, G:0.01, T:0.49
Consensus pattern (37 bp):
TATACATACTTAAATATATTTTGCATATTTATAATTC
Found at i:10500327 original size:16 final size:16
Alignment explanation
Indices: 10500306--10500341 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
10500296 AGGACTCTTT
10500306 TTGAGATCATCCTATC
1 TTGAGATCATCCTATC
*
10500322 TTGAGATCATTCTATC
1 TTGAGATCATCCTATC
10500338 TTGA
1 TTGA
10500342 TCCATATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.25, C:0.19, G:0.14, T:0.42
Consensus pattern (16 bp):
TTGAGATCATCCTATC
Found at i:10503063 original size:20 final size:20
Alignment explanation
Indices: 10503038--10503076 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
10503028 AAACAATAAA
*
10503038 AAATAATGTTATTTTAATTC
1 AAATAATATTATTTTAATTC
*
10503058 AAATAATATTTTTTTAATT
1 AAATAATATTATTTTAATT
10503077 ATTCCAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (20 bp):
AAATAATATTATTTTAATTC
Found at i:10517973 original size:21 final size:21
Alignment explanation
Indices: 10517948--10518000 Score: 106
Period size: 21 Copynumber: 2.5 Consensus size: 21
10517938 AAACGAAAAC
10517948 AGAGAAAGAAAGAAAAGGAAA
1 AGAGAAAGAAAGAAAAGGAAA
10517969 AGAGAAAGAAAGAAAAGGAAA
1 AGAGAAAGAAAGAAAAGGAAA
10517990 AGAGAAAGAAA
1 AGAGAAAGAAA
10518001 AGAGAAAAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (21 bp):
AGAGAAAGAAAGAAAAGGAAA
Found at i:10517974 original size:17 final size:18
Alignment explanation
Indices: 10517953--10518008 Score: 69
Period size: 21 Copynumber: 2.9 Consensus size: 18
10517943 AAAACAGAGA
10517953 AAGAAAGAAAAGGAAAAGAG
1 AAGAAAGAAAAGG-AAA-AG
10517973 AAAGAAAGAAAAGGAAAAG
1 -AAGAAAGAAAAGGAAAAG
10517992 -AGAAAGAAAAGAGAAAA
1 AAGAAAGAAAAG-GAAAA
10518009 AGTTAGGATT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
17 11 0.32
18 5 0.15
19 2 0.06
20 3 0.09
21 13 0.38
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (18 bp):
AAGAAAGAAAAGGAAAAG
Found at i:10517979 original size:11 final size:11
Alignment explanation
Indices: 10517948--10518007 Score: 74
Period size: 11 Copynumber: 5.6 Consensus size: 11
10517938 AAACGAAAAC
10517948 AGAGAAAG-AA
1 AGAGAAAGAAA
10517958 AGA-AAAGGAAA
1 AGAGAAA-GAAA
10517969 AGAGAAAG-AA
1 AGAGAAAGAAA
10517979 AGA-AAAGGAAA
1 AGAGAAA-GAAA
10517990 AGAGAAAGAAA
1 AGAGAAAGAAA
10518001 AGAGAAA
1 AGAGAAA
10518008 AAGTTAGGAT
Statistics
Matches: 44, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
9 6 0.14
10 10 0.23
11 22 0.50
12 6 0.14
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (11 bp):
AGAGAAAGAAA
Found at i:10518912 original size:37 final size:38
Alignment explanation
Indices: 10518820--10518928 Score: 112
Period size: 37 Copynumber: 2.8 Consensus size: 38
10518810 CTTCGACTTC
* *
10518820 AAGTCGATGAGACACTGGGTGTCAATTATTTACTTCGGATT
1 AAGTCGATGAGGCACTGGGTGTCAA--A-TTATTTCGGATT
* * *
10518861 AATTTGATGAGGCACTGGGTGCCAAATTATTTCGG-TT
1 AAGTCGATGAGGCACTGGGTGTCAAATTATTTCGGATT
* * *
10518898 TAGTCGATGAGGCACTAGGTGTCAACTTATT
1 AAGTCGATGAGGCACTGGGTGTCAAATTATT
10518929 GCTTCGAATT
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
37 27 0.47
38 8 0.14
39 1 0.02
41 21 0.37
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.34
Consensus pattern (38 bp):
AAGTCGATGAGGCACTGGGTGTCAAATTATTTCGGATT
Found at i:10523472 original size:5 final size:5
Alignment explanation
Indices: 10523462--10523490 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
10523452 CAGCCACTGC
10523462 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
10523491 GGTTTTCTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:10525816 original size:18 final size:18
Alignment explanation
Indices: 10525777--10525818 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
10525767 ATTGTGTTTC
10525777 CTTAAAATTTGATTTCTT
1 CTTAAAATTTGATTTCTT
*
10525795 -TTAAAATTATTATTT-TT
1 CTTAAAATT-TGATTTCTT
10525812 CTTAAAA
1 CTTAAAA
10525819 ACTTGAGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (18 bp):
CTTAAAATTTGATTTCTT
Found at i:10534497 original size:30 final size:34
Alignment explanation
Indices: 10534437--10534502 Score: 95
Period size: 30 Copynumber: 2.1 Consensus size: 34
10534427 TAATTCATAA
*
10534437 ATTAATATCAATAATTCTATTAATATTTAAAAAT
1 ATTAATATCAATAATTCCATTAATATTTAAAAAT
10534471 ATTAAT-TCAATAA-TCCA-TAA-ATTTAAAAAT
1 ATTAATATCAATAATTCCATTAATATTTAAAAAT
10534501 AT
1 AT
10534503 ATATTAACTA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
30 12 0.39
31 3 0.10
32 3 0.10
33 7 0.23
34 6 0.19
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.41
Consensus pattern (34 bp):
ATTAATATCAATAATTCCATTAATATTTAAAAAT
Found at i:10540879 original size:13 final size:13
Alignment explanation
Indices: 10540843--10540882 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
10540833 AGTTTGGCAA
*
10540843 TGCTTTTGAAAAT
1 TGCTTTTGAAAAG
* *
10540856 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
10540869 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
10540882 T
1 T
10540883 TTCGTTTAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:10546630 original size:9 final size:9
Alignment explanation
Indices: 10546607--10546649 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
10546597 GAATAGATTT
10546607 TTAATTAAA
1 TTAATTAAA
* *
10546616 TAAATTTAA
1 TTAATTAAA
10546625 TTAATTGAAA
1 TTAATT-AAA
10546635 TT-ATTAAA
1 TTAATTAAA
10546643 TTAATTA
1 TTAATTA
10546650 CACCTTGAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
8 5 0.18
9 19 0.68
10 4 0.14
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (9 bp):
TTAATTAAA
Found at i:10558152 original size:9 final size:9
Alignment explanation
Indices: 10558132--10558198 Score: 91
Period size: 9 Copynumber: 7.4 Consensus size: 9
10558122 TTTGGTTAAA
10558132 AATTAACCG
1 AATTAACCG
10558141 AATT-ACCTG
1 AATTAACC-G
10558150 AATTAACCG
1 AATTAACCG
*
10558159 AATTAACCA
1 AATTAACCG
*
10558168 AATTACCCG
1 AATTAACCG
10558177 AATTAACCG
1 AATTAACCG
*
10558186 AATTAACCA
1 AATTAACCG
10558195 AATT
1 AATT
10558199 GAATCACTAC
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
8 3 0.06
9 45 0.88
10 3 0.06
ACGTcount: A:0.45, C:0.22, G:0.07, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:10558164 original size:27 final size:27
Alignment explanation
Indices: 10558132--10558198 Score: 116
Period size: 27 Copynumber: 2.5 Consensus size: 27
10558122 TTTGGTTAAA
* *
10558132 AATTAACCGAATTACCTGAATTAACCG
1 AATTAACCAAATTACCCGAATTAACCG
10558159 AATTAACCAAATTACCCGAATTAACCG
1 AATTAACCAAATTACCCGAATTAACCG
10558186 AATTAACCAAATT
1 AATTAACCAAATT
10558199 GAATCACTAC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.45, C:0.22, G:0.07, T:0.25
Consensus pattern (27 bp):
AATTAACCAAATTACCCGAATTAACCG
Found at i:10566258 original size:92 final size:92
Alignment explanation
Indices: 10566142--10566329 Score: 297
Period size: 92 Copynumber: 2.0 Consensus size: 92
10566132 GCATAATTTA
* * *
10566142 TGTTGTGATTTCACTATTTAATAAATCTTGTCGAGAAGTGGCATTTATTTTTAACATTGCACTAT
1 TGTTGCGATTTCACTACTTAATAAATCTTGTCGAGAAGTGGCACTTATTTTTAACATTGCACTAT
10566207 TTTAAGTTATTTTAACT-TTTTGAAACT
66 TTTAAGTTATTTTAA-TATTTTGAAACT
* *
10566234 TGTTGCGATTTCACTACTTAATAAATCTTGTCGAGTAGTGGCACTTATTTTTAGCATTGCACTAT
1 TGTTGCGATTTCACTACTTAATAAATCTTGTCGAGAAGTGGCACTTATTTTTAACATTGCACTAT
* *
10566299 TTTAAGTTGTTTTGATATTTTGAAACT
66 TTTAAGTTATTTTAATATTTTGAAACT
10566326 TGTT
1 TGTT
10566330 TTGAGTTTTG
Statistics
Matches: 88, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
91 1 0.01
92 87 0.99
ACGTcount: A:0.26, C:0.12, G:0.15, T:0.47
Consensus pattern (92 bp):
TGTTGCGATTTCACTACTTAATAAATCTTGTCGAGAAGTGGCACTTATTTTTAACATTGCACTAT
TTTAAGTTATTTTAATATTTTGAAACT
Found at i:10570072 original size:14 final size:15
Alignment explanation
Indices: 10570053--10570085 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
10570043 AACCTATATT
10570053 ATTTAATTT-TACTA
1 ATTTAATTTCTACTA
*
10570067 ATTTAATTTCTATTA
1 ATTTAATTTCTACTA
10570082 ATTT
1 ATTT
10570086 CGAAAGTGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
ATTTAATTTCTACTA
Found at i:10572368 original size:64 final size:64
Alignment explanation
Indices: 10572246--10572369 Score: 140
Period size: 64 Copynumber: 1.9 Consensus size: 64
10572236 ATCCCAATCT
* * * ** * * * *
10572246 GTATTGATCTTGCACGTGTTGCGGATATACCGTAGCTCTTTGTGAGCATTCTGTTATATGATCG
1 GTATTGATCATGCACGTATTGCGGACATACCACAGCTCTTTATGAGCATCCCGATATATGATCG
* * *
10572310 GTATTGATCATGCATGTATTGCGGACATACCACATCTCTTTATGAGCGTCCCGATATATG
1 GTATTGATCATGCACGTATTGCGGACATACCACAGCTCTTTATGAGCATCCCGATATATG
10572370 GCTCTTCATG
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
64 48 1.00
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.36
Consensus pattern (64 bp):
GTATTGATCATGCACGTATTGCGGACATACCACAGCTCTTTATGAGCATCCCGATATATGATCG
Found at i:10574660 original size:14 final size:14
Alignment explanation
Indices: 10574641--10574671 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
10574631 TTTGCCTCTT
10574641 TTTTAAGTTTTGAG
1 TTTTAAGTTTTGAG
10574655 TTTTAAGTTTTGAG
1 TTTTAAGTTTTGAG
10574669 TTT
1 TTT
10574672 CAGATTTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.19, T:0.61
Consensus pattern (14 bp):
TTTTAAGTTTTGAG
Found at i:10574700 original size:21 final size:20
Alignment explanation
Indices: 10574642--10574700 Score: 55
Period size: 21 Copynumber: 2.9 Consensus size: 20
10574632 TTGCCTCTTT
* *
10574642 TTTAAGTTTTGAGTTTTAAGT
1 TTTAAGTTTT-AGTTTTTAGG
* * *
10574663 TTTGAGTTTCAGATTTTAGG
1 TTTAAGTTTTAGTTTTTAGG
10574683 TTTAAGGTTTTAGTTTTT
1 TTTAA-GTTTTAGTTTTT
10574701 TAATGTTGGG
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
20 11 0.38
21 18 0.62
ACGTcount: A:0.20, C:0.02, G:0.20, T:0.58
Consensus pattern (20 bp):
TTTAAGTTTTAGTTTTTAGG
Found at i:10580745 original size:231 final size:226
Alignment explanation
Indices: 10580276--10580776 Score: 621
Period size: 226 Copynumber: 2.2 Consensus size: 226
10580266 ATTAATTATT
* *** **
10580276 ACTTATGGCATCAAAGAAGAGCTTTATAAGAAAGAAACAAAAGAGGGCTGAGTGTGATACTTAAT
1 ACTTATGGCATCAAAGAAGAGCATTATAAGAAAGAAACAAAAGACAACTGAGTGCAATACTTAAT
* * *
10580341 TACCATTTGATCAAAATTACCTTTGTTGGTGCAAGAAGATTATGAGTATTTGTTTCCATTGGTAA
66 TACCATTTGATCAAAATTACCCTTGTTGGTGAAAGAAGATTATGAGTATTTGTCTCCATTGGTAA
* * *
10580406 GGTTCTTCATTTTTTTAAAGAAATGAATATTGTTGTGTACTTGTAATTGTTGATTTTGGGAAATA
131 GATTCTTCATTTTTTTAAAGAAACGAATATTGTTGTGTACTTGTAATTGTTGATTTTGAGAAATA
* * *
10580471 TTTACTTGATTGATGAGATTTATTAATGCTC
196 TTTACTTGATTGATAAGATTTATTAAAGATC
* * * * *
10580502 ACTTAAGGCATCAAAGAA-AGGCATTATAAAAAAGAAACAAATGACAATTGAGTGCAATACTTGA
1 ACTTATGGCATCAAAGAAGA-GCATTATAAGAAAGAAACAAAAGACAACTGAGTGCAATACTTAA
* * *
10580566 TTATCATTTGATCAGAATTACCCTTGTTGGTGAAAGAATATTATG-GCTATTTG-CTCCATTGGT
65 TTACCATTTGATCAAAATTACCCTTGTTGGTGAAAGAAGATTATGAG-TATTTGTCTCCATTGGT
* ** *
10580629 AATATTCTTGCATTTCTTTTTCTTGAGAAACGAGTATTGTTGTGTACTTGGTAATTGTTGATTTT
129 AAGATTCTT-CA--T-TTTTT-TAAAGAAACGAATATTGTTGTGTACTT-GTAATTGTTGATTTT
* * * *
10580694 GAGAAATATTTGCTTGGTTGATAATATTTTTTAAAGATC
188 GAGAAATATTTACTTGATTGATAAGATTTATTAAAGATC
*
10580733 ACTTATGGCATCAAAGAAGAGTATTATAAGAAAGAAACAAAAGA
1 ACTTATGGCATCAAAGAAGAGCATTATAAGAAAGAAACAAAAGA
10580777 TAATTAAGTG
Statistics
Matches: 231, Mismatches: 35, Indels: 13
0.83 0.13 0.05
Matches are distributed among these distances:
225 18 0.08
226 99 0.43
228 1 0.00
229 5 0.02
230 23 0.10
231 84 0.36
232 1 0.00
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37
Consensus pattern (226 bp):
ACTTATGGCATCAAAGAAGAGCATTATAAGAAAGAAACAAAAGACAACTGAGTGCAATACTTAAT
TACCATTTGATCAAAATTACCCTTGTTGGTGAAAGAAGATTATGAGTATTTGTCTCCATTGGTAA
GATTCTTCATTTTTTTAAAGAAACGAATATTGTTGTGTACTTGTAATTGTTGATTTTGAGAAATA
TTTACTTGATTGATAAGATTTATTAAAGATC
Found at i:10580802 original size:231 final size:226
Alignment explanation
Indices: 10580276--10580814 Score: 645
Period size: 231 Copynumber: 2.4 Consensus size: 226
10580266 ATTAATTATT
****
10580276 ACTTATGGCATCAAAGAAGAGCT-TTATAAGAAAGAAACAAAAGAGGGCTGAGTGTGATACTTAA
1 ACTTATGGCATCAAAGAAGAG-TATTATAAGAAAGAAACAAAAGACAATTGAGTGTGATACTTAA
* * * *
10580340 TTACCATTTGATCAAAATTACCTTTGTTGGTGCAAGAAGATTATGAGTATTTGTTTCCATTGGTA
65 TTATCATTTGATCAAAATTACCCTTGTTGGTGAAAGAAGATTATGAGTATTTGTCTCCATTGGTA
* * *
10580405 AGGTTCTTCATTTTTTTAAAGAAATGAATATTGTTGTGTACTTGTAATTGTTGATTTTGGGAAAT
130 AGATTCTTCATTTTTTTAAAGAAACGAATATTGTTGTGTACTTGTAATTGTTGATTTTGAGAAAT
* * *
10580470 ATTTACTTGATTGATGAGATTTATTAATGCTC
195 ATTTACTTGATTGATAAGATTTATTAAAGATC
* * * * ** *
10580502 ACTTAAGGCATCAAAGAA-AGGCATTATAAAAAAGAAACAAATGACAATTGAGTGCAATACTTGA
1 ACTTATGGCATCAAAGAAGA-GTATTATAAGAAAGAAACAAAAGACAATTGAGTGTGATACTTAA
* *
10580566 TTATCATTTGATCAGAATTACCCTTGTTGGTGAAAGAATATTATG-GCTATTTG-CTCCATTGGT
65 TTATCATTTGATCAAAATTACCCTTGTTGGTGAAAGAAGATTATGAG-TATTTGTCTCCATTGGT
* ** *
10580629 AATATTCTTGCATTTCTTTTTCTTGAGAAACGAGTATTGTTGTGTACTTGGTAATTGTTGATTTT
129 AAGATTCTT-CA--T-TTTTT-TAAAGAAACGAATATTGTTGTGTACTT-GTAATTGTTGATTTT
* * * *
10580694 GAGAAATATTTGCTTGGTTGATAATATTTTTTAAAGATC
188 GAGAAATATTTACTTGATTGATAAGATTTATTAAAGATC
* * ** *
10580733 ACTTATGGCATCAAAGAAGAGTATTATAAGAAAGAAACAAAAGATAATTAAGTGTGATGGTCAAT
1 ACTTATGGCATCAAAGAAGAGTATTATAAGAAAGAAACAAAAGACAATTGAGTGTGATACTTAAT
10580798 TATCATTTGATCAAAAT
66 TATCATTTGATCAAAAT
10580815 AAGTTTGTTT
Statistics
Matches: 259, Mismatches: 44, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
225 18 0.07
226 98 0.38
228 1 0.00
229 5 0.02
230 23 0.09
231 113 0.44
232 1 0.00
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.37
Consensus pattern (226 bp):
ACTTATGGCATCAAAGAAGAGTATTATAAGAAAGAAACAAAAGACAATTGAGTGTGATACTTAAT
TATCATTTGATCAAAATTACCCTTGTTGGTGAAAGAAGATTATGAGTATTTGTCTCCATTGGTAA
GATTCTTCATTTTTTTAAAGAAACGAATATTGTTGTGTACTTGTAATTGTTGATTTTGAGAAATA
TTTACTTGATTGATAAGATTTATTAAAGATC
Found at i:10589237 original size:365 final size:365
Alignment explanation
Indices: 10588567--10589288 Score: 1363
Period size: 365 Copynumber: 2.0 Consensus size: 365
10588557 TGCCTGCCCC
10588567 CTAGATTCGCCTCTGACTGTCTGTGAATACAGTTAGGTTATTTAACTATATGGTAACTTTAACAA
1 CTAGATTCGCCTCTGACTGTCTGTGAATACAGTTAGGTTATTTAACTATATGGTAACTTTAACAA
10588632 AGCATTTGGAGAGAATATATGCAATTACAAAGCAGGATAACATCAAACAAACTTCCTATTTAATA
66 AGCATTTGGAGAGAATATATGCAATTACAAAGCAGGATAACATCAAACAAACTTCCTATTTAATA
10588697 TTATCTGTCATGCGTGTTATCTTTTTCCTGCTCAAAATATTGTTAAATTTTAAAGGGATACACCA
131 TTATCTGTCATGCGTGTTATCTTTTTCCTGCTCAAAATATTGTTAAATTTTAAAGGGATACACCA
* *
10588762 AAAGTGTTTTTCTTATGTTACTAGTGTAGCTGTTGATTGAAACTAGTATAATGTATGGTATGATT
196 AAAGTGTTTTTCTTATGTTACTAGTGTAGATGTTGACTGAAACTAGTATAATGTATGGTATGATT
*
10588827 TTAAATTTCTTTTTCCAAAATATGCTTGCTGAGATGTTGGTTTCTTAAATTGTTAAAACAAGTTT
261 TTAAATTTCTTCTTCCAAAATATGCTTGCTGAGATGTTGGTTTCTTAAATTGTTAAAACAAGTTT
10588892 GTAAGAAGCACAATTTTCAAACTCATCATGGATAAACTCA
326 GTAAGAAGCACAATTTTCAAACTCATCATGGATAAACTCA
*
10588932 CTAGATTCGCCTCTGACTGTCTGTGTATACAGTTAGGTTATTTAACTATATGGTAACTTTAACAA
1 CTAGATTCGCCTCTGACTGTCTGTGAATACAGTTAGGTTATTTAACTATATGGTAACTTTAACAA
10588997 AGCATTTGGAGAGAATATATGCAATTACAAAGCAGGATAACATCAAACAAACTTCCTATTTAATA
66 AGCATTTGGAGAGAATATATGCAATTACAAAGCAGGATAACATCAAACAAACTTCCTATTTAATA
* * *
10589062 TTTTTTGTCATGCGTGTTATCTTTTTCTTGCTCAAAATATTGTTAAATTTTAAAGGGATACACCA
131 TTATCTGTCATGCGTGTTATCTTTTTCCTGCTCAAAATATTGTTAAATTTTAAAGGGATACACCA
10589127 AAAGTGTTTTTCTTATGTTACTAGTGTAGATGTTGACTGAAACTAGTATAATGTATGGTATGATT
196 AAAGTGTTTTTCTTATGTTACTAGTGTAGATGTTGACTGAAACTAGTATAATGTATGGTATGATT
*
10589192 TTAAATTTCTTCTTCCAAAATATGCTTGCTGAGATGTTGGTTTCTTAAATTGTTAAGACAAGTTT
261 TTAAATTTCTTCTTCCAAAATATGCTTGCTGAGATGTTGGTTTCTTAAATTGTTAAAACAAGTTT
*
10589257 GTAAGAAGCACAATTTTCAAACTCCTCATGGA
326 GTAAGAAGCACAATTTTCAAACTCATCATGGA
10589289 AACTCATGCT
Statistics
Matches: 348, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
365 348 1.00
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (365 bp):
CTAGATTCGCCTCTGACTGTCTGTGAATACAGTTAGGTTATTTAACTATATGGTAACTTTAACAA
AGCATTTGGAGAGAATATATGCAATTACAAAGCAGGATAACATCAAACAAACTTCCTATTTAATA
TTATCTGTCATGCGTGTTATCTTTTTCCTGCTCAAAATATTGTTAAATTTTAAAGGGATACACCA
AAAGTGTTTTTCTTATGTTACTAGTGTAGATGTTGACTGAAACTAGTATAATGTATGGTATGATT
TTAAATTTCTTCTTCCAAAATATGCTTGCTGAGATGTTGGTTTCTTAAATTGTTAAAACAAGTTT
GTAAGAAGCACAATTTTCAAACTCATCATGGATAAACTCA
Found at i:10590918 original size:41 final size:41
Alignment explanation
Indices: 10590873--10590954 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
10590863 TATAGCTTTA
10590873 TGTGTTTTGAGTAATCTTTTGCATAATAATCAGTCATTTTG
1 TGTGTTTTGAGTAATCTTTTGCATAATAATCAGTCATTTTG
10590914 TGTGTTTTGAGTAATCTTTTGCATAATAATCAGTCATTTTG
1 TGTGTTTTGAGTAATCTTTTGCATAATAATCAGTCATTTTG
10590955 ACTTTGCTAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.24, C:0.10, G:0.17, T:0.49
Consensus pattern (41 bp):
TGTGTTTTGAGTAATCTTTTGCATAATAATCAGTCATTTTG
Found at i:10598476 original size:3 final size:3
Alignment explanation
Indices: 10598468--10598493 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
10598458 TAACTCTTCA
10598468 CTT CTT CTT CTT CTT CTT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CT
10598494 CTGGGATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:10598876 original size:2 final size:2
Alignment explanation
Indices: 10598869--10598913 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
10598859 GCTTTTTATC
10598869 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
10598911 AG A
1 AG A
10598914 ACGGCTTTCC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:10601331 original size:25 final size:25
Alignment explanation
Indices: 10601283--10601329 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
10601273 TTAAATTTTG
10601283 TATTAATATTAAATAAATATAAATA
1 TATTAATATTAAATAAATATAAATA
*
10601308 TATTAATATTGAATAAA-ATAAA
1 TATTAATATTAAATAAATATAAA
10601330 ATCCCTAAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (25 bp):
TATTAATATTAAATAAATATAAATA
Found at i:10611434 original size:2 final size:2
Alignment explanation
Indices: 10611427--10611487 Score: 113
Period size: 2 Copynumber: 30.5 Consensus size: 2
10611417 GGGAGGGAAG
*
10611427 GA GA GA GA GA GA GA GA GA GA TA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
10611469 GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA G
10611488 GGGGAATGAG
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 57 1.00
ACGTcount: A:0.49, C:0.00, G:0.49, T:0.02
Consensus pattern (2 bp):
GA
Found at i:10614700 original size:176 final size:180
Alignment explanation
Indices: 10614306--10614718 Score: 534
Period size: 176 Copynumber: 2.3 Consensus size: 180
10614296 AGTATAATTT
* *
10614306 GCAACGAGTTTTTCAACTTACACGTGCTTTATTTTATATTCTTGAATTAATTTTTTTTTATATTT
1 GCAATGAGTTTATCAACTTACACGTGCTTTATTTTATATTCTTGAATTAATTTTTTTTTATATTT
* * *
10614371 TAATGCAAAGATTTATAGTTTCAATGTAACCAATTTATCGACTTATAGATGTTCTACTATATGCT
66 CAATGCAAAGATTTATAGTTTCAATGTAACCAATTTATCGACTTACAGATG-TCTACTATAT-CA
* * * * *
10614436 TTTGAATTTTTTTTACGTATTTATTGATGTGCACATTACTTATCTCATACTTT
129 TATGAATTTTTTTTA-GTATTTATTGATGTACACATTAATTATCACATACTTG
* * *
10614489 ACAATGAGTTTGTCAACTTACACGTGCTTTATTTTATATTCTTGAATTAATTTTTTTCTTCTATT
1 GCAATGAGTTTATCAACTTACACGTGCTTTATTTTATATTCTTGAATTAATTTTTTT-TTATATT
* **
10614554 TCAATGCAAAGATTTATAGTTTCAATTGTGACCGGTTTATCGACTTACACG-TG-CT-CTAT-T-
65 TCAATGCAAAGATTTATAGTTTCAA-TGTAACCAATTTATCGACTTACA-GATGTCTACTATATC
*
10614614 ATAT-AATTTTTTTT-GTATTTATTGATGTACATATTAATTATCACATACTTG
128 ATATGAATTTTTTTTAGTATTTATTGATGTACACATTAATTATCACATACTTG
* * **
10614665 GCAATGAGTTTATCGACTTACACGTGCTCTATTTTATATTCTTGACCTAATTTT
1 GCAATGAGTTTATCAACTTACACGTGCTTTATTTTATATTCTTGAATTAATTTT
10614719 GGTTTATCGT
Statistics
Matches: 205, Mismatches: 22, Indels: 13
0.85 0.09 0.05
Matches are distributed among these distances:
176 80 0.39
178 10 0.05
179 2 0.01
181 1 0.00
182 4 0.02
183 56 0.27
184 30 0.15
185 21 0.10
186 1 0.00
ACGTcount: A:0.27, C:0.14, G:0.11, T:0.48
Consensus pattern (180 bp):
GCAATGAGTTTATCAACTTACACGTGCTTTATTTTATATTCTTGAATTAATTTTTTTTTATATTT
CAATGCAAAGATTTATAGTTTCAATGTAACCAATTTATCGACTTACAGATGTCTACTATATCATA
TGAATTTTTTTTAGTATTTATTGATGTACACATTAATTATCACATACTTG
Found at i:10615966 original size:6 final size:6
Alignment explanation
Indices: 10615949--10616011 Score: 81
Period size: 6 Copynumber: 10.5 Consensus size: 6
10615939 AATATATATG
* * **
10615949 GAGGGG GAGGGA GAGGGA GAAGGA GAATGA GAGGGA GAGGGA GAGGGA
1 GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA
*
10615997 GAGGGA AAGGGA GAG
1 GAGGGA GAGGGA GAG
10616012 AGTAGGGGGA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.37, C:0.00, G:0.62, T:0.02
Consensus pattern (6 bp):
GAGGGA
Found at i:10622591 original size:21 final size:22
Alignment explanation
Indices: 10622532--10622591 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
10622522 CAGAAGCAAT
*
10622532 ATACGACACATAAAGTGCCTGA
1 ATACGACACATATAGTGCCTGA
** *
10622554 A-ACGACACACGTGGTGCCT-A
1 ATACGACACATATAGTGCCTGA
10622574 ATACGACACATATAGTGC
1 ATACGACACATATAGTGC
10622592 TTGATCGGCA
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
20 2 0.07
21 27 0.90
22 1 0.03
ACGTcount: A:0.37, C:0.25, G:0.20, T:0.18
Consensus pattern (22 bp):
ATACGACACATATAGTGCCTGA
Found at i:10623754 original size:28 final size:30
Alignment explanation
Indices: 10623717--10623773 Score: 91
Period size: 28 Copynumber: 2.0 Consensus size: 30
10623707 ATTATTTAAT
10623717 TAATAAATATCT-TTTACTTAAA-AATAAA
1 TAATAAATATCTATTTACTTAAATAATAAA
*
10623745 TAATAAATATCTATTTGCTTAAATAATAA
1 TAATAAATATCTATTTACTTAAATAATAA
10623774 GTAAATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 12 0.46
29 9 0.35
30 5 0.19
ACGTcount: A:0.51, C:0.07, G:0.02, T:0.40
Consensus pattern (30 bp):
TAATAAATATCTATTTACTTAAATAATAAA
Found at i:10625412 original size:13 final size:13
Alignment explanation
Indices: 10625396--10625430 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
10625386 TAATAACATA
10625396 AAATAAAATAT-TT
1 AAATAAAA-ATCTT
10625409 AAATAAAAATCTT
1 AAATAAAAATCTT
10625422 AAATAAAAA
1 AAATAAAAA
10625431 ATAAAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 2 0.10
13 19 0.90
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.29
Consensus pattern (13 bp):
AAATAAAAATCTT
Found at i:10625454 original size:13 final size:14
Alignment explanation
Indices: 10625436--10625468 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
10625426 AAAAAATAAA
10625436 AAAAATAAA-AACC
1 AAAAATAAAGAACC
*
10625449 AAAAATAAAGAACT
1 AAAAATAAAGAACC
10625463 AAAAAT
1 AAAAAT
10625469 GGGAGAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.76, C:0.09, G:0.03, T:0.12
Consensus pattern (14 bp):
AAAAATAAAGAACC
Found at i:10626290 original size:6 final size:6
Alignment explanation
Indices: 10626279--10626310 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
10626269 GATTAACATG
10626279 AAATAA AAATAA AAATAA AAATAA AAATAA AA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AA
10626311 TAATTAATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:10629387 original size:14 final size:14
Alignment explanation
Indices: 10629370--10629400 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
10629360 AGAATTATTT
*
10629370 TAATCTAAATTTAC
1 TAATCTAAATTAAC
10629384 TAATCTAAATTAAC
1 TAATCTAAATTAAC
10629398 TAA
1 TAA
10629401 GAACGTGACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.39
Consensus pattern (14 bp):
TAATCTAAATTAAC
Found at i:10637523 original size:144 final size:142
Alignment explanation
Indices: 10637248--10637535 Score: 504
Period size: 144 Copynumber: 2.0 Consensus size: 142
10637238 TGAGCTACAA
*
10637248 AGAAAGGTTGAAGAATTTAAGCAAAGAGAAGCTTATCTAGAAAATGAACTTGCAAATATGCGGGT
1 AGAAAGGTTGAAGAATCTAAGCAAAGAGAAGCTTATCTAGAAAATGAACTTGCAAATATGCGGGT
* *
10637313 TCTCGTTGCCAGATTAAGAAAAAATCCAATGGAGTAGATACTTGAAACTGTAGTTTCCGAATCAA
66 TCTCGTTGCCAAATTAAAAAAAAATCCAATGGAGTAGATACTTGAAACTGTAGTTTCCGAATCAA
10637378 CTGAAGGGAAAC
131 CTGAAGGGAAAC
* *
10637390 AGAAAGGTTGAAGAATCTAAGCAAAGAGAAGCTTATCTAGAAAATGATCCTTGCAAATATGTGGG
1 AGAAAGGTTGAAGAATCTAAGCAAAGAGAAGCTTATCTAGAAAATGA-ACTTGCAAATATGCGGG
*
10637455 TTCTCGTTGCCAAATTAAAAAGAAAATCCAATGGAGTTGATACTTGAAACTGTAGTTTCCGAATC
65 TTCTCGTTGCCAAATTAAAAA-AAAATCCAATGGAGTAGATACTTGAAACTGTAGTTTCCGAATC
10637520 AACTGAAGGGAAAC
129 AACTGAAGGGAAAC
10637534 AG
1 AG
10637536 TGAGATGCGT
Statistics
Matches: 138, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
142 46 0.33
143 34 0.25
144 58 0.42
ACGTcount: A:0.40, C:0.14, G:0.22, T:0.24
Consensus pattern (142 bp):
AGAAAGGTTGAAGAATCTAAGCAAAGAGAAGCTTATCTAGAAAATGAACTTGCAAATATGCGGGT
TCTCGTTGCCAAATTAAAAAAAAATCCAATGGAGTAGATACTTGAAACTGTAGTTTCCGAATCAA
CTGAAGGGAAAC
Found at i:10638513 original size:15 final size:17
Alignment explanation
Indices: 10638478--10638515 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
10638468 CGGGGGCAGC
10638478 GGGAT-GAGGAGCGATA
1 GGGATGGAGGAGCGATA
10638494 GGGATGGAGGAGC-A-A
1 GGGATGGAGGAGCGATA
10638509 GGGATGG
1 GGGATGG
10638516 GCAGTGATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.38
16 6 0.29
17 7 0.33
ACGTcount: A:0.29, C:0.05, G:0.55, T:0.11
Consensus pattern (17 bp):
GGGATGGAGGAGCGATA
Found at i:10639118 original size:54 final size:54
Alignment explanation
Indices: 10638998--10639104 Score: 205
Period size: 54 Copynumber: 2.0 Consensus size: 54
10638988 CCCTGAAAGG
10638998 ATGAAAATGAGGATTGGCACTATTAGCATAAGGGTTCTTGCCAACTTTTACCTA
1 ATGAAAATGAGGATTGGCACTATTAGCATAAGGGTTCTTGCCAACTTTTACCTA
*
10639052 ATGAAAATGAGGATTGGCACTATTAGCATATGGGTTCTTGCCAACTTTTACCT
1 ATGAAAATGAGGATTGGCACTATTAGCATAAGGGTTCTTGCCAACTTTTACCT
10639105 TCAGCTTTTG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.33
Consensus pattern (54 bp):
ATGAAAATGAGGATTGGCACTATTAGCATAAGGGTTCTTGCCAACTTTTACCTA
Found at i:10639645 original size:25 final size:25
Alignment explanation
Indices: 10639616--10639663 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
10639606 AAATAGAAAA
*
10639616 TATATACAAGTATAATTTCAGCACT
1 TATATACAAATATAATTTCAGCACT
* *
10639641 TATATATAAATATAATTTGAGCA
1 TATATACAAATATAATTTCAGCA
10639664 TTTTGAAAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (25 bp):
TATATACAAATATAATTTCAGCACT
Found at i:10640228 original size:3 final size:3
Alignment explanation
Indices: 10640220--10640265 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
10640210 CTACCTCAAC
10640220 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
10640266 TGTTTAATGC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:10641991 original size:43 final size:41
Alignment explanation
Indices: 10641933--10642087 Score: 163
Period size: 43 Copynumber: 3.7 Consensus size: 41
10641923 TGTATTTTCG
*
10641933 TGTAAGACCACGTCTGGGACGTTGGCATCGAATTGTGTATACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCG-ATTGTG-ATAAA
* * ***
10641976 TGTAAGACCATGTCTGGGACATTGGCATCGTATT-TGATTTG
1 TGTAAGACCACGTCTGGGACGTTGGCATCG-ATTGTGATAAA
10642017 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATGTGATTAAA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT-TGTGA-TAAA
*
10642060 TGTAAGCCCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
10642088 TGTACGAGCC
Statistics
Matches: 93, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
40 2 0.02
41 29 0.31
42 6 0.06
43 55 0.59
44 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (41 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATTGTGATAAA
Found at i:10642036 original size:84 final size:84
Alignment explanation
Indices: 10641932--10642087 Score: 212
Period size: 84 Copynumber: 1.9 Consensus size: 84
10641922 ATGTATTTTC
* *
10641932 GTGTAAGACCACGTCTGGGAC-GTTGGCATCGA-ATTGTG-TATACATGTAAGACCATGTCTGGG
1 GTGTAAGACCACGTCTGGGACAG-TGGCATCGATA-TGTGAT-TAAATGTAAGACCACGTCTGGG
10641994 ACATTGGCATCGTATTTGATTT
63 ACATTGGCATCGTATTTGATTT
*
10642016 GTGTAAGACC-CTGTCTGGGACAGTGGCATCGATATGTGATTAAATGTAAGCCCACGTCTGGGAC
1 GTGTAAGACCAC-GTCTGGGACAGTGGCATCGATATGTGATTAAATGTAAGACCACGTCTGGGAC
*
10642080 GTTGGCAT
65 ATTGGCAT
10642088 TGTACGAGCC
Statistics
Matches: 64, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
83 1 0.02
84 60 0.94
85 3 0.05
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (84 bp):
GTGTAAGACCACGTCTGGGACAGTGGCATCGATATGTGATTAAATGTAAGACCACGTCTGGGACA
TTGGCATCGTATTTGATTT
Found at i:10647164 original size:80 final size:82
Alignment explanation
Indices: 10647080--10647265 Score: 261
Period size: 84 Copynumber: 2.3 Consensus size: 82
10647070 AGTTCATTGG
* ** * *
10647080 CTTACACGTGTTCTATTATATGTTTTTTTTTTGTA-TATTG-TG-CATATTACTTATCGCATACT
1 CTTACACGTGCTCTATTATAT-AATTTTTTTTGTATTATTGATGACATATTAATTATCACATACT
10647142 TTACAATGAGTTTATCGA
65 TTACAATGAGTTTATCGA
10647160 CTTACACGTGCTCTATTATATAATTTTTTTTGTATTTATTGATGTACATATTAATTATCACATAC
1 CTTACACGTGCTCTATTATATAATTTTTTTTGTA-TTATTGATG-ACATATTAATTATCACATAC
*
10647225 TTTGCAATGAGTTTATCGA
64 TTTACAATGAGTTTATCGA
*
10647244 CTTACACGTGCTCTATTTTATA
1 CTTACACGTGCTCTATTATATA
10647266 TTATTGACCT
Statistics
Matches: 94, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
79 11 0.12
80 20 0.21
81 5 0.05
82 2 0.02
84 56 0.60
ACGTcount: A:0.26, C:0.15, G:0.11, T:0.48
Consensus pattern (82 bp):
CTTACACGTGCTCTATTATATAATTTTTTTTGTATTATTGATGACATATTAATTATCACATACTT
TACAATGAGTTTATCGA
Found at i:10648599 original size:2 final size:2
Alignment explanation
Indices: 10648594--10648639 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
10648584 TATATATGGG
*
10648594 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GG GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
10648636 GA GA
1 GA GA
10648640 TGCAGCTGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:10648698 original size:2 final size:2
Alignment explanation
Indices: 10648693--10648723 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
10648683 AATATATATG
10648693 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
10648724 GGAGGGAGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:10651491 original size:6 final size:6
Alignment explanation
Indices: 10651476--10651516 Score: 73
Period size: 6 Copynumber: 6.7 Consensus size: 6
10651466 CTATTATATG
10651476 TTTTATT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
1 TTTTA-T TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
10651517 TGTGTTTATT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 29 0.85
7 5 0.15
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:10652456 original size:17 final size:17
Alignment explanation
Indices: 10652434--10652473 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
10652424 ACGATAGGGG
10652434 TTTTAATTAGAAAGAGA
1 TTTTAATTAGAAAGAGA
10652451 TTTTAATTAGAAAGAGA
1 TTTTAATTAGAAAGAGA
*
10652468 TATTAA
1 TTTTAA
10652474 CATAATTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.47, C:0.00, G:0.15, T:0.38
Consensus pattern (17 bp):
TTTTAATTAGAAAGAGA
Found at i:10655543 original size:41 final size:41
Alignment explanation
Indices: 10655487--10655578 Score: 177
Period size: 41 Copynumber: 2.3 Consensus size: 41
10655477 TTCAACTTGA
10655487 AGCATTC-ACTTAAATAGACTAACTTCAATCTCTTCTTGTT
1 AGCATTCAACTTAAATAGACTAACTTCAATCTCTTCTTGTT
10655527 AGCATTCAACTTAAATAGACTAACTTCAATCTCTTCTTGTT
1 AGCATTCAACTTAAATAGACTAACTTCAATCTCTTCTTGTT
10655568 AGCATTCAACT
1 AGCATTCAACT
10655579 CCAAAGATAT
Statistics
Matches: 51, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
40 7 0.14
41 44 0.86
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.38
Consensus pattern (41 bp):
AGCATTCAACTTAAATAGACTAACTTCAATCTCTTCTTGTT
Found at i:10662166 original size:34 final size:34
Alignment explanation
Indices: 10662120--10662187 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
10662110 CTTGCAATGA
*
10662120 CAGCTCACTCCAGAACTATAATAAAAAGCATTGC
1 CAGCTCAATCCAGAACTATAATAAAAAGCATTGC
10662154 CAGCTCAATCCAGAACTATAATAAAAAGCATTGC
1 CAGCTCAATCCAGAACTATAATAAAAAGCATTGC
10662188 TCTTTCTTAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.43, C:0.25, G:0.12, T:0.21
Consensus pattern (34 bp):
CAGCTCAATCCAGAACTATAATAAAAAGCATTGC
Found at i:10663768 original size:11 final size:12
Alignment explanation
Indices: 10663726--10663769 Score: 56
Period size: 11 Copynumber: 3.7 Consensus size: 12
10663716 AAAAAATTAG
10663726 TTAATTAATATAA
1 TTAATTAA-ATAA
10663739 TTAACTTAAAT-A
1 TTAA-TTAAATAA
10663751 TTAATTAAATAA
1 TTAATTAAATAA
10663763 TT-ATTAA
1 TTAATTAA
10663770 GATTCTTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
11 11 0.38
12 8 0.28
13 6 0.21
14 4 0.14
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (12 bp):
TTAATTAAATAA
Found at i:10663945 original size:30 final size:29
Alignment explanation
Indices: 10663883--10663955 Score: 76
Period size: 30 Copynumber: 2.5 Consensus size: 29
10663873 AATTTTAAAT
** *
10663883 TAATTATACTTAAAATTTTATTCAAGTAA
1 TAATTATTTTTAAAATTTTATTCAAATAA
* *
10663912 TAATTTTATTTTAAAATTTTTATT-AAATTA
1 TAATTAT-TTTTAAAA-TTTTATTCAAATAA
10663942 TAATTATTTTTAAA
1 TAATTATTTTTAAA
10663956 TAAAGATATT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
29 13 0.36
30 16 0.44
31 7 0.19
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.53
Consensus pattern (29 bp):
TAATTATTTTTAAAATTTTATTCAAATAA
Found at i:10664328 original size:16 final size:17
Alignment explanation
Indices: 10664309--10664341 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
10664299 ATAATTTTAC
*
10664309 TTTTATTAA-TTTAAAA
1 TTTTATAAATTTTAAAA
10664325 TTTTATAAATTTTAAAA
1 TTTTATAAATTTTAAAA
10664342 AAAATTCCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TTTTATAAATTTTAAAA
Found at i:10667104 original size:12 final size:12
Alignment explanation
Indices: 10667087--10667118 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
10667077 TAGTAGAGTC
*
10667087 ATGATGGTGGTG
1 ATGATGATGGTG
10667099 ATGATGATGGTG
1 ATGATGATGGTG
10667111 ATGATGAT
1 ATGATGAT
10667119 AAGAGGAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.25, C:0.00, G:0.41, T:0.34
Consensus pattern (12 bp):
ATGATGATGGTG
Found at i:10667107 original size:15 final size:15
Alignment explanation
Indices: 10667087--10667118 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
10667077 TAGTAGAGTC
*
10667087 ATGATGGTGGTGATG
1 ATGATGGTGATGATG
10667102 ATGATGGTGATGATG
1 ATGATGGTGATGATG
10667117 AT
1 AT
10667119 AAGAGGAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.00, G:0.41, T:0.34
Consensus pattern (15 bp):
ATGATGGTGATGATG
Found at i:10668131 original size:80 final size:82
Alignment explanation
Indices: 10668032--10668261 Score: 284
Period size: 80 Copynumber: 2.8 Consensus size: 82
10668022 ATTTGTCCCG
* * *
10668032 AAAATGAAAATTTTAAATTTAATCCTCTTATAAATAAATAATTTATAAATTAATATATAGTAAAT
1 AAAATAAAAATTTTAAATTTAATCCTCTTATAAATAAATAAATTATAAATTAATATATAGTAAAA
* *
10668097 TTGTATTTTGTCC-CTC
66 TTGTACTTTGACCTCTC
* * ** *
10668113 ACAATAATAATTTT-AATTTAATCCTCTTATAAATGGATAAATTACAAATTAATATTATAGTAAA
1 AAAATAAAAATTTTAAATTTAATCCTCTTATAAATAAATAAATTATAAATTAATA-TATAGTAAA
*
10668177 ATTGTACTTTGACCTCTT
65 ATTGTACTTTGACCTCTC
* * * * * *
10668195 AAAATAAAAATTTTCAATTCAGTCCTCTTATAAATAAAGAAATCATAATTTAATATATAGTAAAA
1 AAAATAAAAATTTTAAATTTAATCCTCTTATAAATAAATAAATTATAAATTAATATATAGTAAAA
10668260 TT
66 TT
10668262 ACACTTTAGT
Statistics
Matches: 125, Mismatches: 21, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
80 36 0.29
81 31 0.25
82 26 0.21
83 32 0.26
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (82 bp):
AAAATAAAAATTTTAAATTTAATCCTCTTATAAATAAATAAATTATAAATTAATATATAGTAAAA
TTGTACTTTGACCTCTC
Found at i:10668353 original size:23 final size:22
Alignment explanation
Indices: 10668311--10668375 Score: 62
Period size: 23 Copynumber: 2.9 Consensus size: 22
10668301 CCTTCAAAAA
10668311 ATAACAAAATTATAAATTAATAC-
1 ATAA-AAAATTATAAATTAAT-CT
**
10668334 ATAATAAAATTATATTTTAATCT
1 ATAA-AAAATTATAAATTAATCT
10668357 ATGAAAAAATTAT-AATTAA
1 AT-AAAAAATTATAAATTAA
10668376 ATTTTGGCCC
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
22 5 0.14
23 28 0.80
24 2 0.06
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.37
Consensus pattern (22 bp):
ATAAAAAATTATAAATTAATCT
Found at i:10668835 original size:17 final size:19
Alignment explanation
Indices: 10668802--10668846 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 19
10668792 TATTATAAGC
10668802 AATAT-AAA-AATAAATT-
1 AATATAAAATAATAAATTA
*
10668818 AATA-AAAATAATATATTA
1 AATATAAAATAATAAATTA
10668836 AATATAAAATA
1 AATATAAAATA
10668847 GTCAAATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
16 7 0.29
17 7 0.29
18 4 0.17
19 6 0.25
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
AATATAAAATAATAAATTA
Found at i:10674855 original size:20 final size:21
Alignment explanation
Indices: 10674832--10674870 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
10674822 TTTTTTCCTT
*
10674832 TTCCCATTTTC-TTTTATTCC
1 TTCCCATTTCCATTTTATTCC
10674852 TTCCCATTTCCATTTTATT
1 TTCCCATTTCCATTTTATT
10674871 TTTTCTTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.13, C:0.28, G:0.00, T:0.59
Consensus pattern (21 bp):
TTCCCATTTCCATTTTATTCC
Found at i:10675585 original size:98 final size:100
Alignment explanation
Indices: 10675416--10675596 Score: 294
Period size: 98 Copynumber: 1.8 Consensus size: 100
10675406 TTCTATTAAT
* *
10675416 ATATATTACTATTGTACCAAATATTTATTAAAGGAAAAAGGATGAATAATCGTATTGGCATGGCC
1 ATATATTACTATTGTACCAAATATTTATTAAAAGAAAAAGAATGAATAATCGTATTGGCATGGCC
10675481 GTAG-AAAAG-AAAGAGTTTATAACTATCACACAC
66 GTAGAAAAAGAAAAGAGTTTATAACTATCACACAC
* * * *
10675514 ATATATTAGTATTGTACCCAATTTTTATTAAAAGAAAAAGAATGAATAATTGTATTGGCATGGCC
1 ATATATTACTATTGTACCAAATATTTATTAAAAGAAAAAGAATGAATAATCGTATTGGCATGGCC
10675579 GTAGAAAAAGAAAAGAGT
66 GTAGAAAAAGAAAAGAGT
10675597 GTTTTATGGG
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
98 63 0.84
99 5 0.07
100 7 0.09
ACGTcount: A:0.44, C:0.10, G:0.17, T:0.29
Consensus pattern (100 bp):
ATATATTACTATTGTACCAAATATTTATTAAAAGAAAAAGAATGAATAATCGTATTGGCATGGCC
GTAGAAAAAGAAAAGAGTTTATAACTATCACACAC
Found at i:10677556 original size:31 final size:28
Alignment explanation
Indices: 10677496--10677558 Score: 72
Period size: 31 Copynumber: 2.1 Consensus size: 28
10677486 AAATTTGGGA
* * *
10677496 TTTTTTTTTTAATTTGAATTTTCTTTAT
1 TTTTTTTTTTAATTTGAATTATATGTAT
10677524 TTTTTATTTTTATATTTTGAATTATATGTAT
1 TTTTT-TTTTTA-A-TTTGAATTATATGTAT
10677555 TTTT
1 TTTT
10677559 AGATTATTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 5 0.17
29 6 0.21
30 1 0.03
31 17 0.59
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.73
Consensus pattern (28 bp):
TTTTTTTTTTAATTTGAATTATATGTAT
Found at i:10685508 original size:22 final size:21
Alignment explanation
Indices: 10685466--10685510 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
10685456 TATAACAAAG
**
10685466 TTTTAATTTAATATGTTTAAT
1 TTTTAATTTAATATGAATAAT
*
10685487 TTTTAAATTTAATTTGAATAAT
1 TTTT-AATTTAATATGAATAAT
10685509 TT
1 TT
10685511 CACTCGATTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (21 bp):
TTTTAATTTAATATGAATAAT
Found at i:10687057 original size:4 final size:4
Alignment explanation
Indices: 10687048--10687078 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
10687038 AAAGAAAAAA
10687048 AGTG AGTG AGTG AGTG AGTG AGTG AGTG AGT
1 AGTG AGTG AGTG AGTG AGTG AGTG AGTG AGT
10687079 TTTACATTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.48, T:0.26
Consensus pattern (4 bp):
AGTG
Found at i:10690593 original size:44 final size:45
Alignment explanation
Indices: 10690510--10690603 Score: 104
Period size: 45 Copynumber: 2.1 Consensus size: 45
10690500 TCAACTTAGT
* *
10690510 TAAACTATTAAAAATTAAAAATTCGTAAAAGAATATAAAA-ATTG
1 TAAAATATTAAAAATTAAAAAGTCGTAAAAGAATATAAAATATTG
* * *
10690554 TAAAATATTAAGAATGTAAAAAGT-GTAAAAATAAT-TAAAATTTTG
1 TAAAATATTAAAAAT-TAAAAAGTCGT-AAAAGAATATAAAATATTG
10690599 TAAAA
1 TAAAA
10690604 ATGCTTAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
44 20 0.48
45 22 0.52
ACGTcount: A:0.59, C:0.02, G:0.09, T:0.31
Consensus pattern (45 bp):
TAAAATATTAAAAATTAAAAAGTCGTAAAAGAATATAAAATATTG
Found at i:10691051 original size:22 final size:20
Alignment explanation
Indices: 10690989--10691066 Score: 63
Period size: 20 Copynumber: 3.9 Consensus size: 20
10690979 TTTAATACTT
* *
10690989 TTTTACATA-TTTTTAAT-A
1 TTTTACAAATTTTTTTATAA
**
10691007 TTTTA-ATAATTTTTTTACCA
1 TTTTACA-AATTTTTTTATAA
10691027 TTTTAACAAAATTTTTTTATAA
1 TTTT-AC-AAATTTTTTTATAA
*
10691049 TTTTACAATTTTTTTTAT
1 TTTTACAAATTTTTTTAT
10691067 TTTTTTAGTT
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
17 1 0.02
18 6 0.12
19 6 0.12
20 16 0.33
21 3 0.06
22 15 0.31
23 1 0.02
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTACAAATTTTTTTATAA
Found at i:10702009 original size:26 final size:25
Alignment explanation
Indices: 10701980--10702044 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
10701970 CTAAATAACA
10701980 AGCCACAAAGGCTTTTCCACAAGATT
1 AGCCACAAAGGCTTTT-CACAAGATT
**
10702006 AGCCACAAAAACTTTTCACAAGATT
1 AGCCACAAAGGCTTTTCACAAGATT
10702031 AGCCACAAAGGCTT
1 AGCCACAAAGGCTT
10702045 CCTAAGTAAC
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
25 21 0.60
26 14 0.40
ACGTcount: A:0.38, C:0.26, G:0.14, T:0.22
Consensus pattern (25 bp):
AGCCACAAAGGCTTTTCACAAGATT
Found at i:10708255 original size:12 final size:12
Alignment explanation
Indices: 10708234--10708283 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
10708224 AAAAACGAAA
*
10708234 TGATTAAAAACT
1 TGATGAAAAACT
* *
10708246 TGATGGAAAATT
1 TGATGAAAAACT
*
10708258 TTATGAAAAGACT
1 TGATGAAAA-ACT
10708271 TGATGAAAAACT
1 TGATGAAAAACT
10708283 T
1 T
10708284 AAAAAGAACT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
12 20 0.67
13 10 0.33
ACGTcount: A:0.46, C:0.06, G:0.16, T:0.32
Consensus pattern (12 bp):
TGATGAAAAACT
Found at i:10712238 original size:4 final size:4
Alignment explanation
Indices: 10712231--10712256 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
10712221 ATTTATTATT
10712231 GAAA GAAA GAAA GAAA GAAA GAAA GA
1 GAAA GAAA GAAA GAAA GAAA GAAA GA
10712257 GACTCCAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:10715898 original size:17 final size:18
Alignment explanation
Indices: 10715865--10715900 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
10715855 GTTTTTAAAT
*
10715865 TTAAAAAGCTATTAAAAA
1 TTAAAAAGCTATAAAAAA
10715883 TTAAAAAG-TATAAAAAA
1 TTAAAAAGCTATAAAAAA
10715900 T
1 T
10715901 ATTTTTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.28
Consensus pattern (18 bp):
TTAAAAAGCTATAAAAAA
Found at i:10717312 original size:64 final size:64
Alignment explanation
Indices: 10717233--10717362 Score: 251
Period size: 64 Copynumber: 2.0 Consensus size: 64
10717223 TATGAATTTT
10717233 AAGCATATTTACATTTATGCAAAGAAAGAAAAAGAAAAAGCTCATACCAAATTCAAAGTAACAA
1 AAGCATATTTACATTTATGCAAAGAAAGAAAAAGAAAAAGCTCATACCAAATTCAAAGTAACAA
*
10717297 AAGCATATTTACATTTATGGAAAGAAAGAAAAAGAAAAAGCTCATACCAAATTCAAAGTAACAA
1 AAGCATATTTACATTTATGCAAAGAAAGAAAAAGAAAAAGCTCATACCAAATTCAAAGTAACAA
10717361 AA
1 AA
10717363 ATGGAAGAAA
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.55, C:0.13, G:0.12, T:0.20
Consensus pattern (64 bp):
AAGCATATTTACATTTATGCAAAGAAAGAAAAAGAAAAAGCTCATACCAAATTCAAAGTAACAA
Found at i:10729642 original size:36 final size:36
Alignment explanation
Indices: 10729543--10729627 Score: 143
Period size: 36 Copynumber: 2.3 Consensus size: 36
10729533 TACGTGGACG
*
10729543 AAAATCGCTCCCTCAAGGGCAAGTTTTGTTGCCACAT
1 AAAA-CGCTCCCTCAAGGGCGAGTTTTGTTGCCACAT
*
10729580 AAAACGCTCCCTCAATGGCGAGTTTTGTTGCCACAT
1 AAAACGCTCCCTCAAGGGCGAGTTTTGTTGCCACAT
10729616 AAAACGCTCCCT
1 AAAACGCTCCCT
10729628 TGGGGACGCG
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
36 42 0.91
37 4 0.09
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (36 bp):
AAAACGCTCCCTCAAGGGCGAGTTTTGTTGCCACAT
Found at i:10730197 original size:124 final size:125
Alignment explanation
Indices: 10729900--10730436 Score: 842
Period size: 125 Copynumber: 4.3 Consensus size: 125
10729890 ATTTATTAAG
* * *
10729900 GAAATCTCTCCCACGTGGACGCGCTTTTGCTACAGTAAGTCCTGAAAAAATAATTTTGAGTTGAC
1 GAAATCGCTCTCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTTGAGTTGAC
* **
10729965 GTTTCTGAGCAAATAGTAT-AAAAACGCTTCAAGCAAGATGTTTTATCAGAAGAATTTCT
66 GATTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAAGATACTTTATCAGAAGAATTTCT
* * * * *
10730024 AAAATCGCTCCCACGTGAACGTGCTTTTGCTACAATAGGTCCTGAAAAAATAATTTTGAGTTGAC
1 GAAATCGCTCTCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTTGAGTTGAC
* *
10730089 GATTCTGAGCAAATAGTATAAAAAACGCTTCAAGTAGGATACTTTATCAGAAGAATTTCT
66 GATTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAAGATACTTTATCAGAAGAATTTCT
*
10730149 GAAATCGCTCTCACGTGGACGCGCTTTTGCTATAGTAGGTCCTGAAAAAATAATTTTGAGTTGAC
1 GAAATCGCTCTCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTTGAGTTGAC
* *
10730214 GATTCTGAGCAAATAGTATAAAAAACGCTTCAAGTAGGATACTTTATCAGAAGAATTTCT
66 GATTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAAGATACTTTATCAGAAGAATTTCT
* *
10730274 GAAATCGCTCTCACGTGGACGCGCTTTTGCTATAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
1 GAAATCGCTCTCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTTGAGTTGAC
* **
10730339 GTTTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAAGATGTTTTATCAGAAGAATTTCT
66 GATTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAAGATACTTTATCAGAAGAATTTCT
* * * *
10730399 GAAATCGCTCTCACGTAGACACGTTTTTACTACAGTAG
1 GAAATCGCTCTCACGTGGACGCGCTTTTGCTACAGTAG
10730437 CATGTTTGGG
Statistics
Matches: 384, Mismatches: 28, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
124 77 0.20
125 307 0.80
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (125 bp):
GAAATCGCTCTCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTTGAGTTGAC
GATTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAAGATACTTTATCAGAAGAATTTCT
Found at i:10737454 original size:3 final size:3
Alignment explanation
Indices: 10737440--10737479 Score: 71
Period size: 3 Copynumber: 13.0 Consensus size: 3
10737430 TACCGTCTCC
10737440 CTT CTCT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CT-T CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
10737480 TTTTCTTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 33 0.92
4 3 0.08
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:10738962 original size:19 final size:19
Alignment explanation
Indices: 10738938--10738974 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
10738928 GGAGCTTAAG
10738938 ATGGTAGATTGAGAATGCC
1 ATGGTAGATTGAGAATGCC
10738957 ATGGTAGATTGAGAATGC
1 ATGGTAGATTGAGAATGC
10738975 TAACTTTGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.27
Consensus pattern (19 bp):
ATGGTAGATTGAGAATGCC
Found at i:10740910 original size:24 final size:23
Alignment explanation
Indices: 10740882--10740932 Score: 66
Period size: 24 Copynumber: 2.2 Consensus size: 23
10740872 TTAGTAGGTC
*
10740882 AAATAAACTATGCTAATAAATGTT
1 AAATAAACTATGCTAA-AAATATT
* *
10740906 AAATATATTATGCTAAAAATATT
1 AAATAAACTATGCTAAAAATATT
10740929 AAAT
1 AAAT
10740933 CTTCTAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 10 0.42
24 14 0.58
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (23 bp):
AAATAAACTATGCTAAAAATATT
Found at i:10742485 original size:6 final size:6
Alignment explanation
Indices: 10742468--10742496 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
10742458 AATTATTTCC
10742468 TAAATA -AAATA TAAATA TAAATA TAAATA
1 TAAATA TAAATA TAAATA TAAATA TAAATA
10742497 ATATAATTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
TAAATA
Found at i:10743597 original size:3 final size:3
Alignment explanation
Indices: 10743589--10743631 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
10743579 TCTCTTGAAC
10743589 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
10743632 GTCTTACCCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:10748072 original size:19 final size:19
Alignment explanation
Indices: 10748036--10748078 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
10748026 ATATTGTATA
*
10748036 TATTAAAATGCTTTAATTT
1 TATTAAAATGATTTAATTT
*
10748055 TATTAAAAT-ATTTAA-AT
1 TATTAAAATGATTTAATTT
10748072 TATTAAA
1 TATTAAA
10748079 TAAATTAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 8 0.36
18 5 0.23
19 9 0.41
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (19 bp):
TATTAAAATGATTTAATTT
Found at i:10748550 original size:3 final size:3
Alignment explanation
Indices: 10748542--10748577 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
10748532 CTCTATCTTA
10748542 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
10748578 CTTCATTAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:10752611 original size:5 final size:5
Alignment explanation
Indices: 10752601--10752626 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
10752591 ATTCCTTCAA
10752601 AAAAG AAAAG AAAAG AAAAG AAAAG A
1 AAAAG AAAAG AAAAG AAAAG AAAAG A
10752627 GAAGGTGCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:10756497 original size:46 final size:46
Alignment explanation
Indices: 10756430--10756521 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 46
10756420 TAAGCAGGAT
* *
10756430 GCAGCTGGATGTTCTAATATGGCGAGGGAACAAATCAGGTGAATAC
1 GCAGCCGGATGTTCTAATATGGCGAGGGAACAAATCAGGCGAATAC
10756476 GCAGCCGGATGTTCTAATATGGCGAGGGAACAAATCAGGCGAATAC
1 GCAGCCGGATGTTCTAATATGGCGAGGGAACAAATCAGGCGAATAC
10756522 ACAGTCCAAG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.20
Consensus pattern (46 bp):
GCAGCCGGATGTTCTAATATGGCGAGGGAACAAATCAGGCGAATAC
Found at i:10762776 original size:32 final size:32
Alignment explanation
Indices: 10762701--10762776 Score: 82
Period size: 32 Copynumber: 2.4 Consensus size: 32
10762691 TACACATCTC
* *
10762701 TGTGGCACATATGGCCTAATTAGCCTAGCCCG
1 TGTGGCACACATGGCCTAACTAGCCTAGCCCG
* * **
10762733 TGTTGCGCACATGGCCTAACTAG-CTCAGCTTG
1 TGTGGCACACATGGCCTAACTAGCCT-AGCCCG
10762765 TGTGGCACACAT
1 TGTGGCACACAT
10762777 AGTTGCGTTG
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
31 2 0.06
32 33 0.94
ACGTcount: A:0.21, C:0.28, G:0.25, T:0.26
Consensus pattern (32 bp):
TGTGGCACACATGGCCTAACTAGCCTAGCCCG
Found at i:10763870 original size:18 final size:18
Alignment explanation
Indices: 10763845--10763894 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
10763835 GGCCAATCTG
10763845 GGCATGTGGGCTCACAC-
1 GGCATGTGGGCTCACACT
10763862 GGACATGTGGGCTCACACT
1 GG-CATGTGGGCTCACACT
*
10763881 GGCATATGGGCTCA
1 GGCATGTGGGCTCA
10763895 AAATTTTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 2 0.07
18 26 0.87
19 2 0.07
ACGTcount: A:0.20, C:0.26, G:0.34, T:0.20
Consensus pattern (18 bp):
GGCATGTGGGCTCACACT
Found at i:10770024 original size:20 final size:21
Alignment explanation
Indices: 10769985--10770027 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
10769975 TTCTATATAT
*
10769985 TTTTAAAAAATATCAGTTTAA
1 TTTTAAAAAAAATCAGTTTAA
*
10770006 TTTTAAAAAAAAT-ATTTTAA
1 TTTTAAAAAAAATCAGTTTAA
10770026 TT
1 TT
10770028 ACTATTTCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (21 bp):
TTTTAAAAAAAATCAGTTTAA
Found at i:10770777 original size:5 final size:5
Alignment explanation
Indices: 10770767--10770814 Score: 89
Period size: 5 Copynumber: 9.8 Consensus size: 5
10770757 AGTCAATTAT
10770767 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA T-AAA TAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAA
10770815 TAACATTGTA
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.10
5 38 0.90
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
TAAAA
Found at i:10772519 original size:6 final size:6
Alignment explanation
Indices: 10772504--10772536 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
10772494 GATACATGTC
*
10772504 TTTT-G TTTTGG TTTTGG TTTTGG TTTTGA TTTT
1 TTTTGG TTTTGG TTTTGG TTTTGG TTTTGG TTTT
10772537 TAGGTGGCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
5 4 0.15
6 22 0.85
ACGTcount: A:0.03, C:0.00, G:0.24, T:0.73
Consensus pattern (6 bp):
TTTTGG
Found at i:10775552 original size:19 final size:19
Alignment explanation
Indices: 10775528--10775564 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
10775518 TTAAAATTTT
10775528 ATTTTAATATAATATTAAC
1 ATTTTAATATAATATTAAC
10775547 ATTTTAATATAATATTAA
1 ATTTTAATATAATATTAA
10775565 TATTGACATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTTTAATATAATATTAAC
Found at i:10775573 original size:25 final size:24
Alignment explanation
Indices: 10775517--10775573 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
10775507 TTATAAAAAA
* * *
10775517 ATTAAAATTTTATTTTAATATAAT
1 ATTAACATTTTAATATAATATAAT
10775541 ATTAACATTTTAATATAATATTAAT
1 ATTAACATTTTAATATAATA-TAAT
*
10775566 ATTGACAT
1 ATTAACAT
10775574 CCTTTTATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 17 0.61
25 11 0.39
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.49
Consensus pattern (24 bp):
ATTAACATTTTAATATAATATAAT
Found at i:10785449 original size:13 final size:14
Alignment explanation
Indices: 10785420--10785446 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
10785410 TTTTATTTAA
10785420 AAACTTATATTTTT
1 AAACTTATATTTTT
10785434 AAACTTATATTTT
1 AAACTTATATTTT
10785447 AAAAACAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (14 bp):
AAACTTATATTTTT
Found at i:10785529 original size:7 final size:7
Alignment explanation
Indices: 10785517--10785542 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
10785507 AAAAAATATT
10785517 TAAAATA
1 TAAAATA
10785524 TAAAATA
1 TAAAATA
10785531 TAAAATA
1 TAAAATA
10785538 TAAAA
1 TAAAA
10785543 GATATAGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
TAAAATA
Found at i:10786683 original size:34 final size:34
Alignment explanation
Indices: 10786640--10786710 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
10786630 CCTGCAAAAA
10786640 ATAAAATTTTGATTTAGTTTATAAATATAAAGAT
1 ATAAAATTTTGATTTAGTTTATAAATATAAAGAT
10786674 ATAAAATTTTGATTTAGTTTATAAATATAAAGAT
1 ATAAAATTTTGATTTAGTTTATAAATATAAAGAT
10786708 ATA
1 ATA
10786711 CGCTAATAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (34 bp):
ATAAAATTTTGATTTAGTTTATAAATATAAAGAT
Found at i:10789403 original size:15 final size:16
Alignment explanation
Indices: 10789374--10789403 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10789364 GGTTAATTTA
10789374 AAAGAAAAGTAAGAGG
1 AAAGAAAAGTAAGAGG
10789390 AAAGAAAA-TAAGAG
1 AAAGAAAAGTAAGAG
10789404 AGACGATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.67, C:0.00, G:0.27, T:0.07
Consensus pattern (16 bp):
AAAGAAAAGTAAGAGG
Found at i:10799645 original size:24 final size:26
Alignment explanation
Indices: 10799617--10799672 Score: 80
Period size: 27 Copynumber: 2.2 Consensus size: 26
10799607 TATAGGGGTA
10799617 TAGTG-CC-TATCTGATAGGCGGCAC
1 TAGTGACCTTATCTGATAGGCGGCAC
10799641 TAGTGATCCTTATCTGATAGGCGGCAC
1 TAGTGA-CCTTATCTGATAGGCGGCAC
*
10799668 CAGTG
1 TAGTG
10799673 GCATTTTCTC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 5 0.18
26 2 0.07
27 21 0.75
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGTGACCTTATCTGATAGGCGGCAC
Found at i:10802796 original size:62 final size:62
Alignment explanation
Indices: 10802730--10803044 Score: 540
Period size: 62 Copynumber: 5.1 Consensus size: 62
10802720 CAATGTACCT
*
10802730 AATTTATATTACAAAATTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAACAA
1 AATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAACAA
* * * *
10802792 AATTTATATTACAAAGTTTGGTCCAATTTTTAATGTTATAATATATTTAATTTATATAACCA
1 AATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAACAA
* *
10802854 AATTTATATTACAAAGTTTGTTCTAATTTTTAATGTTTTAATGTATTTAATTTATATAACAA
1 AATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAACAA
*
10802916 AATTTATATTACAAAGTTTGTTCCAATTTTTAATATTGTAATGTATTTAATTTATATAACAA
1 AATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAACAA
* *
10802978 AATTTATATTACAAAGTTTGTTCCAATTTTTAATATTGTAATGTATTTAATTTATATTACAA
1 AATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAACAA
10803040 AATTT
1 AATTT
10803045 GTTCCAAGTT
Statistics
Matches: 239, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 239 1.00
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.49
Consensus pattern (62 bp):
AATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAACAA
Found at i:10803031 original size:48 final size:47
Alignment explanation
Indices: 10802978--10803075 Score: 151
Period size: 48 Copynumber: 2.1 Consensus size: 47
10802968 TATATAACAA
* *
10802978 AATTTATATTACAAAGTTTGTTCCAATTTTTAATATTGTAATGTATTT
1 AATTTATATTACAAAATTTGTTCCAAGTTTTAATATTGTAATGT-TTT
* *
10803026 AATTTATATTACAAAATTTGTTCCAAGTTTTAGTCTTGTAATGTTTT
1 AATTTATATTACAAAATTTGTTCCAAGTTTTAATATTGTAATGTTTT
10803073 AAT
1 AAT
10803076 GTTGCAATTA
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
47 6 0.13
48 40 0.87
ACGTcount: A:0.33, C:0.07, G:0.09, T:0.51
Consensus pattern (47 bp):
AATTTATATTACAAAATTTGTTCCAAGTTTTAATATTGTAATGTTTT
Found at i:10804282 original size:14 final size:14
Alignment explanation
Indices: 10804263--10804297 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
10804253 CAAATTACAT
10804263 GTTAGAATAGTATC
1 GTTAGAATAGTATC
10804277 GTTAGAATAGTATC
1 GTTAGAATAGTATC
*
10804291 ATTAGAA
1 GTTAGAA
10804298 AAAAAATGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.40, C:0.06, G:0.20, T:0.34
Consensus pattern (14 bp):
GTTAGAATAGTATC
Found at i:10806355 original size:17 final size:17
Alignment explanation
Indices: 10806333--10806365 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
10806323 CCACCCTCTC
10806333 CTTCTTCTTC-TTCTTCT
1 CTTCTT-TTCTTTCTTCT
10806350 CTTCTTTTCTTTCTTC
1 CTTCTTTTCTTTCTTC
10806366 AAAAACTCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (17 bp):
CTTCTTTTCTTTCTTCT
Found at i:10810537 original size:6 final size:6
Alignment explanation
Indices: 10810526--10810555 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
10810516 TTTGCATCTG
10810526 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
10810556 TTAGAATTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
ATTTTT
Found at i:10811421 original size:20 final size:23
Alignment explanation
Indices: 10811390--10811440 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 23
10811380 TATTATAATG
*
10811390 TTTTTAAGT-AAATTA-TTAGTT
1 TTTTTAAGTAAAATTACTGAGTT
10811411 TTTTTAA-TAAAATTACTGAGTT
1 TTTTTAAGTAAAATTACTGAGTT
10811433 TATTTTAA
1 T-TTTTAA
10811441 AAGAATCTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 1 0.04
21 13 0.50
22 6 0.23
23 6 0.23
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.55
Consensus pattern (23 bp):
TTTTTAAGTAAAATTACTGAGTT
Found at i:10818671 original size:18 final size:18
Alignment explanation
Indices: 10818648--10818704 Score: 96
Period size: 18 Copynumber: 3.2 Consensus size: 18
10818638 CCCAACTACT
* *
10818648 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTGCC
10818666 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTGCC
10818684 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTGCC
10818702 GTA
1 GTA
10818705 AACGGTCGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (18 bp):
GTATACGTGAATAGTGCC
Found at i:10822886 original size:27 final size:26
Alignment explanation
Indices: 10822854--10822941 Score: 77
Period size: 26 Copynumber: 3.2 Consensus size: 26
10822844 AATTTTAATT
10822854 TTTTTAATTTTTAAGAACATTTTTTAA
1 TTTTTAATTTTTAA-AACATTTTTTAA
* * **
10822881 TTTTTATTTTTTAAACCATTTTTGGA
1 TTTTTAATTTTTAAAACATTTTTTAA
* * *
10822907 GTTGTAATTTTTAATAATATTTTATTGAA
1 TTTTTAATTTTTAA-AACATTTT-TT-AA
10822936 TTTTTA
1 TTTTTA
10822942 TAAATTAAAT
Statistics
Matches: 45, Mismatches: 13, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
26 20 0.44
27 19 0.42
28 1 0.02
29 5 0.11
ACGTcount: A:0.30, C:0.03, G:0.07, T:0.60
Consensus pattern (26 bp):
TTTTTAATTTTTAAAACATTTTTTAA
Found at i:10832465 original size:6 final size:6
Alignment explanation
Indices: 10832454--10832480 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
10832444 TCAAAATTTT
10832454 ATTATA ATTATA ATTATA ATTATA ATT
1 ATTATA ATTATA ATTATA ATTATA ATT
10832481 TATTTAGACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
ATTATA
Found at i:10836623 original size:9 final size:9
Alignment explanation
Indices: 10836609--10836645 Score: 56
Period size: 9 Copynumber: 3.9 Consensus size: 9
10836599 TTAACAAAAC
10836609 TTTTAATAT
1 TTTTAATAT
10836618 TTTTAACATAT
1 TTTT-A-ATAT
10836629 TTTTAATAT
1 TTTTAATAT
10836638 TTTTAATA
1 TTTTAATA
10836646 AATTATATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 16 0.62
10 2 0.08
11 8 0.31
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (9 bp):
TTTTAATAT
Found at i:10837599 original size:31 final size:31
Alignment explanation
Indices: 10837561--10837695 Score: 113
Period size: 31 Copynumber: 4.4 Consensus size: 31
10837551 AAAAAAAAGA
10837561 TTAGGTACCAAATTAGGAAAAAGAGTCAAGT
1 TTAGGTACCAAATTAGGAAAAAGAGTCAAGT
*
10837592 TTAGGTACCAAATT-GGATCCCAAA-A---AA-T
1 TTAGGTACCAAATTAGGA---AAAAGAGTCAAGT
* * * * *
10837620 ATTAAGTACCAACTTAAGAAAATGTGTCAAGT
1 -TTAGGTACCAAATTAGGAAAAAGAGTCAAGT
*
10837652 TTAGGTACCAAATTAGGAAAAAGTGTCAAGT
1 TTAGGTACCAAATTAGGAAAAAGAGTCAAGT
10837683 TT-GTGTACCAAAT
1 TTAG-GTACCAAAT
10837696 CGGACCAAGA
Statistics
Matches: 82, Mismatches: 11, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
27 2 0.02
28 1 0.01
29 14 0.17
30 6 0.07
31 54 0.66
32 2 0.02
33 3 0.04
ACGTcount: A:0.42, C:0.13, G:0.19, T:0.27
Consensus pattern (31 bp):
TTAGGTACCAAATTAGGAAAAAGAGTCAAGT
Found at i:10837631 original size:60 final size:60
Alignment explanation
Indices: 10837553--10837665 Score: 172
Period size: 60 Copynumber: 1.9 Consensus size: 60
10837543 AATCGAACAA
* *
10837553 AAAAAAGATTAGGTACCAAATTAGGAAAAAGAGTCAAGTTTAGGTACCAAATTGGATCCC
1 AAAAAAGATTAAGTACCAAATTAAGAAAAAGAGTCAAGTTTAGGTACCAAATTGGATCCC
* * * *
10837613 AAAAAATATTAAGTACCAACTTAAGAAAATGTGTCAAGTTTAGGTACCAAATT
1 AAAAAAGATTAAGTACCAAATTAAGAAAAAGAGTCAAGTTTAGGTACCAAATT
10837666 AGGAAAAAGT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
60 47 1.00
ACGTcount: A:0.46, C:0.12, G:0.17, T:0.25
Consensus pattern (60 bp):
AAAAAAGATTAAGTACCAAATTAAGAAAAAGAGTCAAGTTTAGGTACCAAATTGGATCCC
Found at i:10837751 original size:91 final size:91
Alignment explanation
Indices: 10837561--10837755 Score: 238
Period size: 91 Copynumber: 2.1 Consensus size: 91
10837551 AAAAAAAAGA
*
10837561 TTAGGTACCAAATTAGGAAAAAGAGTCAAGTTTAGGTACCAAATTGGATCCCAAAAAATATTAAG
1 TTAGGTACCAAATTAGGAAAAAGAGTCAAGTTTAGGTACCAAATCGGATCCCAAAAAATATTAAG
* * *
10837626 TACCAACTTAAGAAAATGTGTCAAGT
66 TACCAAATTAAGAAAAAGTGTCAAAT
* *
10837652 TTAGGTACCAAATTAGGAAAAAGTGTCAAGTTT-GTGTACCAAATCGGA--CCAAGAAAAAATTT
1 TTAGGTACCAAATTAGGAAAAAGAGTCAAGTTTAG-GTACCAAATCGGATCCCAA-AAAATA-TT
*
10837714 ATGTACCAAATT-AGTAAAAAGTGT-AAAT
63 AAGTACCAAATTAAG-AAAAAGTGTCAAAT
*
10837742 TTCATGTACCAAAT
1 TT-AGGTACCAAAT
10837756 GTTATATTAA
Statistics
Matches: 91, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
89 4 0.04
90 13 0.14
91 74 0.81
ACGTcount: A:0.44, C:0.13, G:0.17, T:0.27
Consensus pattern (91 bp):
TTAGGTACCAAATTAGGAAAAAGAGTCAAGTTTAGGTACCAAATCGGATCCCAAAAAATATTAAG
TACCAAATTAAGAAAAAGTGTCAAAT
Found at i:10841417 original size:25 final size:25
Alignment explanation
Indices: 10841370--10841427 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
10841360 TATATGCTAA
* *
10841370 TTAAACATTCCAAATTTGGAAATTC
1 TTAAACATTCCAAACTTGAAAATTC
* * *
10841395 TTAAACATTTCAGACTTGAAAATTT
1 TTAAACATTCCAAACTTGAAAATTC
*
10841420 TTCAACAT
1 TTAAACAT
10841428 CAGTTGGGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.38
Consensus pattern (25 bp):
TTAAACATTCCAAACTTGAAAATTC
Found at i:10841492 original size:8 final size:7
Alignment explanation
Indices: 10841473--10841503 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
10841463 ATAGTATAAG
10841473 TAAAAAT
1 TAAAAAT
10841480 TAAAAAT
1 TAAAAAT
10841487 TAAAAAT
1 TAAAAAT
10841494 TAAAATAT
1 TAAAA-AT
10841502 TA
1 TA
10841504 GCATATTGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 19 0.83
8 4 0.17
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (7 bp):
TAAAAAT
Found at i:10851551 original size:5 final size:5
Alignment explanation
Indices: 10851541--10851608 Score: 77
Period size: 5 Copynumber: 13.2 Consensus size: 5
10851531 AAGTATGTTT
*
10851541 TTATA TTATA TTAT- TGT-TA ATATA TTATA TTATA TTATA TTATA TTATA
1 TTATA TTATA TTATA T-TATA TTATA TTATA TTATA TTATA TTATA TTATA
10851590 TTATTA TATATA TATATA T
1 TTA-TA T-TATA T-TATA T
10851609 AACAAAAGAA
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
4 3 0.05
5 39 0.70
6 12 0.21
7 2 0.04
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (5 bp):
TTATA
Found at i:10851609 original size:10 final size:10
Alignment explanation
Indices: 10851560--10851609 Score: 51
Period size: 8 Copynumber: 5.7 Consensus size: 10
10851550 ATTATTGTTA
10851560 ATATAT-TAT
1 ATATATATAT
10851569 AT-TATAT-T
1 ATATATATAT
10851577 ATAT-TATAT
1 ATATATATAT
10851586 -TATAT-TAT
1 ATATATATAT
10851594 -TATATATAT
1 ATATATATAT
10851603 ATATATA
1 ATATATA
10851610 ACAAAAGAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
8 20 0.57
9 9 0.26
10 6 0.17
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
ATATATATAT
Found at i:10852752 original size:27 final size:28
Alignment explanation
Indices: 10852694--10852752 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 28
10852684 ATCTAATGCC
**
10852694 TTATTGGTGTGTTTGGGAGGATATGATA
1 TTATTGGTGTGTTAAGGAGGATATGATA
*
10852722 -TATTGGTGTGTTAAGGAGGAT-TTATA
1 TTATTGGTGTGTTAAGGAGGATATGATA
10852748 TTATT
1 TTATT
10852753 CCGGGTGTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 4 0.15
27 23 0.85
ACGTcount: A:0.24, C:0.00, G:0.31, T:0.46
Consensus pattern (28 bp):
TTATTGGTGTGTTAAGGAGGATATGATA
Found at i:10853036 original size:17 final size:17
Alignment explanation
Indices: 10853016--10853048 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
10853006 GTGAATACAA
10853016 ATTGCAATA-GAATTGAT
1 ATTG-AATATGAATTGAT
10853033 ATTGAATATGAATTGA
1 ATTGAATATGAATTGA
10853049 AATGAACTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.42, C:0.03, G:0.18, T:0.36
Consensus pattern (17 bp):
ATTGAATATGAATTGAT
Found at i:10855205 original size:61 final size:61
Alignment explanation
Indices: 10855136--10855254 Score: 177
Period size: 61 Copynumber: 2.0 Consensus size: 61
10855126 GAATAACTCT
*
10855136 TTTCTAGTAGTTGTCTTACAGTACAAAGATTCTGATAGT-TTTATGGTACAAATAAATCTCC
1 TTTCTAGTAGTTGTCTTACACTACAAAGATTCTGATA-TATTTATGGTACAAATAAATCTCC
* * * *
10855197 TTTCTAGTAGTTGTCTTACACTATAGAGATTCTGATATATTTTTGGTATAAATAAATC
1 TTTCTAGTAGTTGTCTTACACTACAAAGATTCTGATATATTTATGGTACAAATAAATC
10855255 ATCTGGAATA
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
60 1 0.02
61 51 0.98
ACGTcount: A:0.31, C:0.13, G:0.14, T:0.42
Consensus pattern (61 bp):
TTTCTAGTAGTTGTCTTACACTACAAAGATTCTGATATATTTATGGTACAAATAAATCTCC
Found at i:10871943 original size:27 final size:27
Alignment explanation
Indices: 10871912--10871970 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
10871902 GCCATAGGAG
*
10871912 AATATTTACACGCTATATAGATAGGGT
1 AATATTTACACGCTATACAGATAGGGT
10871939 AATATTTACACGCTATACAGATAGGGT
1 AATATTTACACGCTATACAGATAGGGT
*
10871966 TATAT
1 AATAT
10871971 GTGATCTGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34
Consensus pattern (27 bp):
AATATTTACACGCTATACAGATAGGGT
Found at i:10881144 original size:13 final size:13
Alignment explanation
Indices: 10881137--10881171 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
10881127 AAATTTTTTA
10881137 AAAGAATTTCTTC
1 AAAGAATTTCTTC
10881150 AAAGAATTTCTTC
1 AAAGAATTTCTTC
10881163 AAAGAATTT
1 AAAGAATTT
10881172 TCTCTCTACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.37
Consensus pattern (13 bp):
AAAGAATTTCTTC
Found at i:10887498 original size:19 final size:21
Alignment explanation
Indices: 10887451--10887503 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
10887441 TATATTAAAT
*
10887451 ATATATTTTATTTTTAATCAA
1 ATATATATTATTTTTAATCAA
10887472 ATATATATTATTTTTAATCAA
1 ATATATATTATTTTTAATCAA
10887493 ATATATATTAT
1 ATATATATTAT
10887504 ATATATTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.55
Consensus pattern (21 bp):
ATATATATTATTTTTAATCAA
Done.