Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 36 of 144
Found at i:10891215 original size:25 final size:25
Alignment explanation
Indices: 10891187--10891276 Score: 110
Period size: 25 Copynumber: 3.6 Consensus size: 25
10891177 GTGAGTTGTA
*
10891187 TATCGGGAAGCTCATGATAGCCAAT
1 TATCGGGAAGCTCATGAGAGCCAAT
* *
10891212 TATCGAGAAGCTCATAAGAGCC-AT
1 TATCGGGAAGCTCATGAGAGCCAAT
* *
10891236 TAATTGGGAAGCTCATGAGAGCCAAA
1 T-ATCGGGAAGCTCATGAGAGCCAAT
*
10891262 TATCGGGATGCTCAT
1 TATCGGGAAGCTCAT
10891277 ATAAGCTGTG
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
24 3 0.06
25 49 0.91
26 2 0.04
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.23
Consensus pattern (25 bp):
TATCGGGAAGCTCATGAGAGCCAAT
Found at i:10893375 original size:57 final size:59
Alignment explanation
Indices: 10893301--10893430 Score: 164
Period size: 57 Copynumber: 2.3 Consensus size: 59
10893291 TCTAAATGAG
*
10893301 TTCATTTCACATTTTGGAGAAAACC-ACATTCATTTCCAAATGATTT-C-ATTTCTCCATT
1 TTCATTTCACATTTTGGAGAAAACCTACA-TAATTTCCAAAT-ATTTCCTATTTCTCCATT
* *
10893359 TTCATTT-TCATTTTGGAGAAAACCTTCATAATTTCCAAATATTTCCTATTTCTCCATT
1 TTCATTTCACATTTTGGAGAAAACCTACATAATTTCCAAATATTTCCTATTTCTCCATT
*
10893417 TTTATTT-A-ATTTTG
1 TTCATTTCACATTTTG
10893431 TTCATTTGAT
Statistics
Matches: 64, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
56 4 0.06
57 34 0.53
58 26 0.41
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (59 bp):
TTCATTTCACATTTTGGAGAAAACCTACATAATTTCCAAATATTTCCTATTTCTCCATT
Found at i:10900086 original size:26 final size:26
Alignment explanation
Indices: 10900057--10900107 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
10900047 ATTTATTTAT
10900057 AATCATGCTTCGCAAAATTAAACAAA
1 AATCATGCTTCGCAAAATTAAACAAA
*
10900083 AATCATGCTTCGCCAAATTAAACAA
1 AATCATGCTTCGCAAAATTAAACAA
10900108 TAATGCTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.47, C:0.22, G:0.08, T:0.24
Consensus pattern (26 bp):
AATCATGCTTCGCAAAATTAAACAAA
Found at i:10910609 original size:20 final size:18
Alignment explanation
Indices: 10910584--10910625 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
10910574 TTCCATAAAA
10910584 TTTTACAATTTTTTATATT
1 TTTTACAA-TTTTTATATT
*
10910603 CTTTTACGATTTTTATATT
1 -TTTTACAATTTTTATATT
10910622 TTTT
1 TTTT
10910626 CTAATCTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.19
19 10 0.48
20 7 0.33
ACGTcount: A:0.21, C:0.07, G:0.02, T:0.69
Consensus pattern (18 bp):
TTTTACAATTTTTATATT
Found at i:10910869 original size:88 final size:85
Alignment explanation
Indices: 10910770--10910935 Score: 242
Period size: 88 Copynumber: 1.9 Consensus size: 85
10910760 TTTGAGGGTC
* * * * *
10910770 TTTTTTATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAAAAAAGTAGGGGCTTAATTGC
1 TTTTTAATGCATTTTAAAAGTTCAAGTACCCAAATGAGTAC-AAAAAAA--AGGGACTTAATTGC
* *
10910835 TTTTTTGAAAAGGTTTCAAGGCA
63 TTTTTTAAAAAAGTTTCAAGGCA
10910858 TTTTTAATGCATTTTAAAAGTTCAAGTACCCAAATGAGTACAAAAAAAAGGGACTTAATTGCTTT
1 TTTTTAATGCATTTTAAAAGTTCAAGTACCCAAATGAGTACAAAAAAAAGGGACTTAATTGCTTT
10910923 TTTAAAAAAGTTT
66 TTTAAAAAAGTTT
10910936 GAGGATTTTT
Statistics
Matches: 71, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
85 27 0.38
87 7 0.10
88 37 0.52
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.36
Consensus pattern (85 bp):
TTTTTAATGCATTTTAAAAGTTCAAGTACCCAAATGAGTACAAAAAAAAGGGACTTAATTGCTTT
TTTAAAAAAGTTTCAAGGCA
Found at i:10911626 original size:21 final size:21
Alignment explanation
Indices: 10911566--10911614 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
10911556 CTTAAATTTA
10911566 TTCTTGAGGTC-TCGAGACATG
1 TTCTTGAGGTCAT-GAGACATG
*
10911587 TTTTTGAGGTCATGAGACATG
1 TTCTTGAGGTCATGAGACATG
10911608 TTCTTGA
1 TTCTTGA
10911615 TGTATTGAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 24 0.96
22 1 0.04
ACGTcount: A:0.20, C:0.14, G:0.27, T:0.39
Consensus pattern (21 bp):
TTCTTGAGGTCATGAGACATG
Found at i:10914462 original size:45 final size:45
Alignment explanation
Indices: 10914404--10914491 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
10914394 ATAGAATAGA
10914404 AAAAAAAAAATTTTTTCTATTAATTATCAAT-TAATTAATATTAAG
1 AAAAAAAAAATTTTTTCTATTAATTATCAATAT-ATTAATATTAAG
*
10914449 AAAAAAAATATTTTTTCTATTAATTATCAATATATTAATATTA
1 AAAAAAAAAATTTTTTCTATTAATTATCAATATATTAATATTA
10914492 GAGTTAAATA
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
45 40 0.98
46 1 0.02
ACGTcount: A:0.50, C:0.05, G:0.01, T:0.44
Consensus pattern (45 bp):
AAAAAAAAAATTTTTTCTATTAATTATCAATATATTAATATTAAG
Found at i:10916045 original size:77 final size:77
Alignment explanation
Indices: 10915916--10916071 Score: 276
Period size: 77 Copynumber: 2.0 Consensus size: 77
10915906 TTGGACGTGA
*
10915916 CACATGAAGTGCCAGATATACGCAAAGTGACTTCATAAAAGTGTTCCAAGAAATCCCTCAAGTTT
1 CACATGAAGTGCCAGATATACGCAAAGTGACTTCATAAAAATGTTCCAAGAAATCCCTCAAGTTT
10915981 CTAACATTATCC
66 CTAACATTATCC
* * *
10915993 CACATGAAGTGTCAGATATACGCAAAGTGACTTCATAAAAATGTTTCGAGAAATCCCTCAAGTTT
1 CACATGAAGTGCCAGATATACGCAAAGTGACTTCATAAAAATGTTCCAAGAAATCCCTCAAGTTT
10916058 CTAACATTATCC
66 CTAACATTATCC
10916070 CA
1 CA
10916072 ATCATCCACA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
77 75 1.00
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (77 bp):
CACATGAAGTGCCAGATATACGCAAAGTGACTTCATAAAAATGTTCCAAGAAATCCCTCAAGTTT
CTAACATTATCC
Found at i:10917752 original size:57 final size:57
Alignment explanation
Indices: 10917590--10917874 Score: 305
Period size: 56 Copynumber: 5.1 Consensus size: 57
10917580 ATTTTTCAAT
* * * * * * *
10917590 AGCAT-AATAATGCTTACTTTGAGACACTGAAGCAACA-CTTTAATTTAATTTAGGAC
1 AGCATGAA-AATGCTCAATTTGAAACACTAAAACAACAGCTTTAATTCAATTTAAGAC
* * * * *
10917646 AACAT-AATAATACTCAATTTGAAACA-TTAAACAGCAGC-TTAATTTAATTTAAGAC
1 AGCATGAA-AATGCTCAATTTGAAACACTAAAACAACAGCTTTAATTCAATTTAAGAC
* * * *
10917701 AGCATGAAAATGCTCAATTTGATACACTAAAACACCAACTTTAATTCAATTTATGAC
1 AGCATGAAAATGCTCAATTTGAAACACTAAAACAACAGCTTTAATTCAATTTAAGAC
* * *
10917758 AGTATGAAAATGCTCAATTTGAAACACTAAAACAACAGC-TTCATTCAATTTAAGAT
1 AGCATGAAAATGCTCAATTTGAAACACTAAAACAACAGCTTTAATTCAATTTAAGAC
* *
10917814 AGTATGAAAATGCTCAATTTGAAACACTCAAAA-AACAGCTTTAATTCAATTTATGAC
1 AGCATGAAAATGCTCAATTTGAAACACT-AAAACAACAGCTTTAATTCAATTTAAGAC
10917871 AGCA
1 AGCA
10917875 AGCAAACAGC
Statistics
Matches: 195, Mismatches: 28, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
55 43 0.22
56 81 0.42
57 71 0.36
ACGTcount: A:0.43, C:0.16, G:0.11, T:0.30
Consensus pattern (57 bp):
AGCATGAAAATGCTCAATTTGAAACACTAAAACAACAGCTTTAATTCAATTTAAGAC
Found at i:10917825 original size:113 final size:112
Alignment explanation
Indices: 10917626--10917874 Score: 331
Period size: 113 Copynumber: 2.2 Consensus size: 112
10917616 CTGAAGCAAC
* * * * * *
10917626 ACTTTAATTTAATTTAGGACAACATAATAATACTCAATTTGAAACATTAAACAGCAGCTTAATTT
1 ACTTTAATTCAATTTATGACAGCATAATAATACTCAATTTGAAACATAAAACAACAGCTTAATTC
* *
10917691 AATTTAAGACAGCATGAAAATGCTCAATTTGATACACT-AAAACACCA
66 AATTTAAGACAGCATGAAAATGCTCAATTTGAAACACTCAAAA-AACA
* * *
10917738 ACTTTAATTCAATTTATGACAGTATGAA-AATGCTCAATTTGAAACACTAAAACAACAGCTTCAT
1 ACTTTAATTCAATTTATGACAGCAT-AATAATACTCAATTTGAAACA-TAAAACAACAGCTTAAT
* *
10917802 TCAATTTAAGATAGTATGAAAATGCTCAATTTGAAACACTCAAAAAACA
64 TCAATTTAAGACAGCATGAAAATGCTCAATTTGAAACACTCAAAAAACA
*
10917851 GCTTTAATTCAATTTATGACAGCA
1 ACTTTAATTCAATTTATGACAGCA
10917875 AGCAAACAGC
Statistics
Matches: 119, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
112 38 0.32
113 77 0.65
114 4 0.03
ACGTcount: A:0.44, C:0.16, G:0.10, T:0.31
Consensus pattern (112 bp):
ACTTTAATTCAATTTATGACAGCATAATAATACTCAATTTGAAACATAAAACAACAGCTTAATTC
AATTTAAGACAGCATGAAAATGCTCAATTTGAAACACTCAAAAAACA
Found at i:10918638 original size:6 final size:6
Alignment explanation
Indices: 10918627--10918686 Score: 84
Period size: 6 Copynumber: 9.7 Consensus size: 6
10918617 ACTTTTAGAC
*
10918627 TTTAGT TTTAGT TTTAGT TTTAGT TTTAGT TTTAGT TTTAGAAT TTTATT
1 TTTAGT TTTAGT TTTAGT TTTAGT TTTAGT TTTAGT TTTAG--T TTTAGT
*
10918677 TTTATT TTTA
1 TTTAGT TTTA
10918687 AATTATTTGT
Statistics
Matches: 51, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
6 46 0.90
8 5 0.10
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (6 bp):
TTTAGT
Found at i:10918730 original size:18 final size:18
Alignment explanation
Indices: 10918707--10918750 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
10918697 AATTTGTATG
*
10918707 ATTGGGTTAGGTTGGGTA
1 ATTGGGTTAGGTTGGATA
*
10918725 ATTGGGTTGGGTTGGATA
1 ATTGGGTTAGGTTGGATA
*
10918743 CTTGGGTT
1 ATTGGGTT
10918751 TGGATTTGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (18 bp):
ATTGGGTTAGGTTGGATA
Found at i:10920151 original size:6 final size:6
Alignment explanation
Indices: 10920134--10920171 Score: 58
Period size: 6 Copynumber: 6.2 Consensus size: 6
10920124 ACCCTTCTTC
*
10920134 TCCCCTT TCCCCT TCCCCT TCCCTT TCCCCT TCCCCT T
1 TCCCC-T TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT T
10920172 GGGTTGCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
6 24 0.83
7 5 0.17
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (6 bp):
TCCCCT
Found at i:10920171 original size:18 final size:18
Alignment explanation
Indices: 10920136--10920171 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
10920126 CCTTCTTCTC
10920136 CCCTTTCCCCTTCCCCTT
1 CCCTTTCCCCTTCCCCTT
10920154 CCCTTTCCCCTTCCCCTT
1 CCCTTTCCCCTTCCCCTT
10920172 GGGTTGCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (18 bp):
CCCTTTCCCCTTCCCCTT
Found at i:10920453 original size:11 final size:12
Alignment explanation
Indices: 10920429--10920467 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
10920419 CGTTCTCACT
10920429 AAAATCGGTAAA
1 AAAATCGGTAAA
10920441 AAAATCGGTAAA
1 AAAATCGGTAAA
*
10920453 AAAATCGATAAA
1 AAAATCGGTAAA
10920465 AAA
1 AAA
10920468 TCGACGGTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.64, C:0.08, G:0.13, T:0.15
Consensus pattern (12 bp):
AAAATCGGTAAA
Found at i:10920817 original size:12 final size:13
Alignment explanation
Indices: 10920794--10920819 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10920784 TCAATGAACC
10920794 CTTAATTTTTTTG
1 CTTAATTTTTTTG
10920807 CTTAATTTTTTTG
1 CTTAATTTTTTTG
10920820 GTACTCAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.69
Consensus pattern (13 bp):
CTTAATTTTTTTG
Found at i:10922275 original size:12 final size:12
Alignment explanation
Indices: 10922245--10922283 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
10922235 ATGCAACAGG
10922245 AAACCAGCA-GC
1 AAACCAGCATGC
10922256 AAACCAGCATGC
1 AAACCAGCATGC
* *
10922268 AGACCAGCATCC
1 AAACCAGCATGC
10922280 AAAC
1 AAAC
10922284 TGAACCAGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
11 9 0.38
12 15 0.62
ACGTcount: A:0.44, C:0.36, G:0.15, T:0.05
Consensus pattern (12 bp):
AAACCAGCATGC
Found at i:10928459 original size:90 final size:92
Alignment explanation
Indices: 10928306--10928494 Score: 355
Period size: 90 Copynumber: 2.1 Consensus size: 92
10928296 ACATTGATTT
10928306 TTTAATATATTTGTACAAACTATTTTTATATTGTTTCATTTAATAAAATAAAAGTTATTTTTAAT
1 TTTAATATATTTGTACAAACTATTTTTATATTGTTTCATTTAATAAAATAAAAGTTATTTTTAAT
10928371 ATTTTAATAGTAA-TT-TTTTTATATA
66 ATTTTAATAGTAATTTATTTTTATATA
10928396 TTTAATATATTTGTACAAACTATTTTTATATTGTTTCATTTAATAAAATAAAAGTTATTTTTAAT
1 TTTAATATATTTGTACAAACTATTTTTATATTGTTTCATTTAATAAAATAAAAGTTATTTTTAAT
*
10928461 ATTTTAATAGTAATTTATTTTTATATT
66 ATTTTAATAGTAATTTATTTTTATATA
10928488 TTTAATA
1 TTTAATA
10928495 AAATAGAAGT
Statistics
Matches: 96, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
90 78 0.81
91 2 0.02
92 16 0.17
ACGTcount: A:0.38, C:0.03, G:0.04, T:0.55
Consensus pattern (92 bp):
TTTAATATATTTGTACAAACTATTTTTATATTGTTTCATTTAATAAAATAAAAGTTATTTTTAAT
ATTTTAATAGTAATTTATTTTTATATA
Found at i:10934351 original size:126 final size:126
Alignment explanation
Indices: 10934126--10934520 Score: 470
Period size: 126 Copynumber: 3.1 Consensus size: 126
10934116 GGCCAAATAA
* * * * *
10934126 GAACTACTGTAGAAAAAGAGCGTCCACATGAGAGCATTTTTCAGTAATTTTGTTGACAGTGTATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
* * * * * * * *
10934191 CTGCTTAAAG-AGTTATTGACACTATTTGTTCAGAACCATATTTTCAAAGTTATTTTTTCAG
66 CTGCTTGAAGCA-TTTTTTACAATATTTGTTCAGAACCGTCTTCTCAAAATTATTTTTTCAG
* * * *
10934252 GAACTACTATAGAAAAAGAGCATCCACGTGGGTGCTTTTTTTAGTAATTTTGCTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
* * * * *
10934317 CTGGTTGAGGCATTTTTTACAATATTTGTTCAGAACTGTCTTCTCAAAATTACTTTTTCAA
66 CTGCTTGAAGCATTTTTTACAATATTTGTTCAGAACCGTCTTCTCAAAATTATTTTTTCAG
* * * * * *
10934378 TAACTATTTTAGAAAAAGAGCGTACACGTGGGAGCTTTTTTCAGTAATTTTGCTGAAAGTGCATA
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
* *
10934443 CTGCTTGAAGCGTTTTTTACATTATCTT-TTCAGAACCGTCTTCTCAAAATTATTTTTTCAG
66 CTGCTTGAAGCATTTTTTACAATAT-TTGTTCAGAACCGTCTTCTCAAAATTATTTTTTCAG
* *
10934504 AAACTATTGTAGAAAAA
1 GAACTACTGTAGAAAAA
10934521 AACCAAAGTT
Statistics
Matches: 227, Mismatches: 40, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
126 224 0.99
127 3 0.01
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.37
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
CTGCTTGAAGCATTTTTTACAATATTTGTTCAGAACCGTCTTCTCAAAATTATTTTTTCAG
Found at i:10934628 original size:34 final size:34
Alignment explanation
Indices: 10934590--10934694 Score: 131
Period size: 34 Copynumber: 3.1 Consensus size: 34
10934580 AACTAAACTA
*
10934590 TAATTTAATTAATTTTTTTTAAAACCCTAAATCC
1 TAATTTAATTAATTTTTTTTAAAACCCTAAAACC
* *
10934624 TAATTTAATTAA-TTTGTTTAAAACCCCAAAAACC
1 TAATTTAATTAATTTTTTTTAAAA-CCCTAAAACC
** * *
10934658 TAATTTAATTAATTTTTTAAAAAAACCTAAACCC
1 TAATTTAATTAATTTTTTTTAAAACCCTAAAACC
10934692 TAA
1 TAA
10934695 ACATACCAAA
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
33 10 0.17
34 42 0.70
35 8 0.13
ACGTcount: A:0.44, C:0.15, G:0.01, T:0.40
Consensus pattern (34 bp):
TAATTTAATTAATTTTTTTTAAAACCCTAAAACC
Found at i:10937732 original size:25 final size:25
Alignment explanation
Indices: 10937698--10937803 Score: 119
Period size: 25 Copynumber: 4.2 Consensus size: 25
10937688 TACATCAATA
10937698 ATTAAAATAAGGACTTTAATATTTT
1 ATTAAAATAAGGACTTTAATATTTT
* *
10937723 ATTAAAATAAGGAC--TAATCA-ATA
1 ATTAAAATAAGGACTTTAAT-ATTTT
10937746 ATTAAAATAAGGACTTTAATATTTT
1 ATTAAAATAAGGACTTTAATATTTT
* *
10937771 ATTAAAAATCAAGAAATTTAATATTTT
1 ATT-AAAAT-AAGGACTTTAATATTTT
*
10937798 AATAAA
1 ATTAAA
10937804 GAAATTTAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
23 19 0.28
24 2 0.03
25 22 0.32
26 8 0.12
27 17 0.25
ACGTcount: A:0.51, C:0.05, G:0.07, T:0.38
Consensus pattern (25 bp):
ATTAAAATAAGGACTTTAATATTTT
Found at i:10937749 original size:23 final size:23
Alignment explanation
Indices: 10937691--10937760 Score: 88
Period size: 23 Copynumber: 3.0 Consensus size: 23
10937681 TAAAAATTAC
10937691 ATCAATAATTAAAATAAGGACTTTA
1 ATCAATAATTAAAATAAGGAC--TA
* *
10937716 AT-ATTTTATTAAAATAAGGACTA
1 ATCA-ATAATTAAAATAAGGACTA
10937739 ATCAATAATTAAAATAAGGACT
1 ATCAATAATTAAAATAAGGACT
10937761 TTAATATTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
23 20 0.51
24 2 0.05
25 17 0.44
ACGTcount: A:0.51, C:0.07, G:0.09, T:0.33
Consensus pattern (23 bp):
ATCAATAATTAAAATAAGGACTA
Found at i:10941244 original size:29 final size:28
Alignment explanation
Indices: 10941212--10941298 Score: 74
Period size: 28 Copynumber: 3.1 Consensus size: 28
10941202 TCATAAGAAC
10941212 ATTTTATGAAATTATATTTAATAATAATT
1 ATTTTAT-AAATTATATTTAATAATAATT
* * *
10941241 A-TTT-TAAATTGTATTAAATCAT-A-T
1 ATTTTATAAATTATATTTAATAATAATT
* *
10941265 ATTTTAATTAAAATATATTTAATATTAATT
1 ATTTT-A-TAAATTATATTTAATAATAATT
10941295 ATTT
1 ATTT
10941299 CAAATTTTCA
Statistics
Matches: 44, Mismatches: 8, Indels: 11
0.70 0.13 0.17
Matches are distributed among these distances:
24 2 0.05
25 4 0.09
26 14 0.32
27 1 0.02
28 16 0.36
29 2 0.05
30 5 0.11
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (28 bp):
ATTTTATAAATTATATTTAATAATAATT
Found at i:10941294 original size:54 final size:54
Alignment explanation
Indices: 10941224--10941428 Score: 175
Period size: 54 Copynumber: 3.6 Consensus size: 54
10941214 TTTATGAAAT
10941224 TATATTTAATAATAATTATTTTAAATTGTATTAAATCATATATTTTAATTAAAA
1 TATATTTAATAATAATTATTTTAAATTGTATTAAATCATATATTTTAATTAAAA
* * * * * *
10941278 TATATTTAATATTAATTATTTCAAATTTTCATT-TATCATATATTATGATTTGAGTAAA
1 TATATTTAATAATAATTATTTTAAATTGT-ATTAAATCATATATT-TTAATT-A--AAA
* * * * *
10941336 T-TCATATAAGAAT-ATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAA
1 TAT-ATTTAATAATAATT-ATT-TT-A-AATTGTATTAAATCATATATTTTAATTAAAA
10941393 TATATTTAATAATAATTATGTTTAAATATG-ATTAAA
1 TATATTTAATAATAATTAT-TTTAAAT-TGTATTAAA
10941429 ATATTTATTA
Statistics
Matches: 118, Mismatches: 18, Indels: 29
0.72 0.11 0.18
Matches are distributed among these distances:
54 36 0.31
55 16 0.14
56 3 0.03
57 19 0.16
58 19 0.16
59 2 0.02
60 8 0.07
61 15 0.13
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (54 bp):
TATATTTAATAATAATTATTTTAAATTGTATTAAATCATATATTTTAATTAAAA
Found at i:10941397 original size:16 final size:16
Alignment explanation
Indices: 10941376--10941417 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
10941366 TTATTAAATT
*
10941376 ATATATTTTAATTATA
1 ATATATTTTAATAATA
10941392 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
10941407 AT-TATGTTTAA
1 ATATAT-TTTAA
10941418 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:10941402 original size:15 final size:15
Alignment explanation
Indices: 10941367--10941408 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
10941357 TTAAGAATTT
*
10941367 TATTAAATTAT-ATA
1 TATTTAATTATAATA
10941381 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
10941395 TATTTAATAATAAT
1 TATTTAATTATAAT
10941409 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:10941635 original size:18 final size:17
Alignment explanation
Indices: 10941607--10941641 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
10941597 ATTATTAAGA
*
10941607 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
10941624 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
10941642 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:10943018 original size:19 final size:19
Alignment explanation
Indices: 10942996--10943034 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
10942986 AAATTTTATT
*
10942996 TTATATTAATAATTAAATA
1 TTATAATAATAATTAAATA
*
10943015 TTATAATAATATTTAAATA
1 TTATAATAATAATTAAATA
10943034 T
1 T
10943035 CAATTTAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
TTATAATAATAATTAAATA
Found at i:10944274 original size:2 final size:2
Alignment explanation
Indices: 10944267--10944292 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10944257 AAAGCAAATA
10944267 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
10944293 TGCTTTCTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:10945893 original size:21 final size:21
Alignment explanation
Indices: 10945869--10945910 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
10945859 TATGCGAATC
*
10945869 TTTTCTT-TTTTGGTGTTTGTT
1 TTTTCTTGTTTTGAT-TTTGTT
10945890 TTTTCTTGTTTTGATTTTGTT
1 TTTTCTTGTTTTGATTTTGTT
10945911 GGTGAGTGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.02, C:0.05, G:0.17, T:0.76
Consensus pattern (21 bp):
TTTTCTTGTTTTGATTTTGTT
Found at i:10951858 original size:67 final size:67
Alignment explanation
Indices: 10951750--10951909 Score: 275
Period size: 67 Copynumber: 2.4 Consensus size: 67
10951740 AAGTGAAATG
* * *
10951750 CAAATTGTAAATGAAAAATACCAATCGATTCATAACCCTTAACCTTGTTAATCGATTTCTAACCA
1 CAAATTGCAGATGAAAAATACCAATCGATTCATAACCCTTAACCCTGTTAATCGATTTCTAACCA
10951815 AA
66 AA
* *
10951817 CAAATTGCAGATGAAAAATACCAATTGATTTATAACCCTTAACCCTGTTAATCGATTTCTAACCA
1 CAAATTGCAGATGAAAAATACCAATCGATTCATAACCCTTAACCCTGTTAATCGATTTCTAACCA
10951882 AA
66 AA
10951884 CAAATTGCAGATGAAAAATACCAATC
1 CAAATTGCAGATGAAAAATACCAATC
10951910 TTTTCCTCCC
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 87 1.00
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (67 bp):
CAAATTGCAGATGAAAAATACCAATCGATTCATAACCCTTAACCCTGTTAATCGATTTCTAACCA
AA
Found at i:10954591 original size:15 final size:16
Alignment explanation
Indices: 10954571--10954601 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
10954561 AAAATATCTT
10954571 ATAAAATA-TAATATA
1 ATAAAATATTAATATA
10954586 ATAAAATATTAATATA
1 ATAAAATATTAATATA
10954602 TATATATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
ATAAAATATTAATATA
Found at i:10954860 original size:22 final size:21
Alignment explanation
Indices: 10954825--10954865 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
10954815 AAATAATATT
* *
10954825 AATAAAATATTAAACATTAATC
1 AATAAAAAACTAAA-ATTAATC
10954847 AATAAAAAACTAAAATTAA
1 AATAAAAAACTAAAATTAA
10954866 AATGTAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (21 bp):
AATAAAAAACTAAAATTAATC
Found at i:10959415 original size:24 final size:24
Alignment explanation
Indices: 10959381--10959432 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
10959371 TTTCTAGAAG
* * *
10959381 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAGCACAATAT
*
10959405 ATTTAGCATTTATTAGCACAATAT
1 ATTTAGCATTTATGAGCACAATAT
10959429 ATTT
1 ATTT
10959433 GACTTTGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.06, G:0.10, T:0.48
Consensus pattern (24 bp):
ATTTAGCATTTATGAGCACAATAT
Found at i:10966916 original size:3 final size:3
Alignment explanation
Indices: 10966908--10966933 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
10966898 ATAACACATA
10966908 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
10966934 GTAGTAGTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:10976352 original size:24 final size:24
Alignment explanation
Indices: 10976320--10976369 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
10976310 TCAATCGAAC
10976320 TGTATGTGGAGAACCATTCTCTAT
1 TGTATGTGGAGAACCATTCTCTAT
*
10976344 TGTATGTGGAGAATCATTCTCTAT
1 TGTATGTGGAGAACCATTCTCTAT
10976368 TG
1 TG
10976370 GGACACATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.14, G:0.22, T:0.40
Consensus pattern (24 bp):
TGTATGTGGAGAACCATTCTCTAT
Found at i:10978104 original size:15 final size:14
Alignment explanation
Indices: 10978083--10978118 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
10978073 ATAATCCTTA
*
10978083 ATAATTATCTTAAT
1 ATAATTATCCTAAT
10978097 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
10978112 ATAATTA
1 ATAATTA
10978119 AAATAGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:10981242 original size:2 final size:2
Alignment explanation
Indices: 10981235--10981303 Score: 138
Period size: 2 Copynumber: 34.5 Consensus size: 2
10981225 GTAAAACTGA
10981235 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
10981277 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
10981304 AGGTAATTAT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 67 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:10983463 original size:54 final size:54
Alignment explanation
Indices: 10983356--10983467 Score: 127
Period size: 54 Copynumber: 2.1 Consensus size: 54
10983346 CACAGCCTAA
* * * * *
10983356 GACATGGCCGTGTGTATCAAGTCAGTGAGTTATACGGCCTAGCACATGGCCTGC
1 GACATGGCCATGTGTATCAAGTCAGAGAGTTACACGGCCTAGCACACGACCTGC
** * *
10983410 GACATGGCCATGTGTCA-CAAGTCAGAGAGTTACACGGTTTGGCATACGACCTGC
1 GACATGGCCATGTGT-ATCAAGTCAGAGAGTTACACGGCCTAGCACACGACCTGC
10983464 GACA
1 GACA
10983468 CGGTTGCGTG
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
54 47 0.98
55 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (54 bp):
GACATGGCCATGTGTATCAAGTCAGAGAGTTACACGGCCTAGCACACGACCTGC
Found at i:10983926 original size:31 final size:29
Alignment explanation
Indices: 10983891--10983948 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 29
10983881 CAAAAGAACC
10983891 TAATT-GATATAACTTCAATAGTTTAGGGATG
1 TAATTAGA-ATAA-TTCAA-AGTTTAGGGATG
*
10983922 TAATTAGAATAATTTAAAGTTTAGGGA
1 TAATTAGAATAATTCAAAGTTTAGGGA
10983949 CTAATTTAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 10 0.40
30 4 0.16
31 9 0.36
32 2 0.08
ACGTcount: A:0.40, C:0.03, G:0.19, T:0.38
Consensus pattern (29 bp):
TAATTAGAATAATTCAAAGTTTAGGGATG
Found at i:10985036 original size:11 final size:11
Alignment explanation
Indices: 10985006--10985090 Score: 78
Period size: 11 Copynumber: 8.2 Consensus size: 11
10984996 AAATAAAAAT
10985006 AAAAATTTTAA
1 AAAAATTTTAA
*
10985017 AAAGTATTTTAA
1 AAA-AATTTTAA
10985029 AAAAATTTT--
1 AAAAATTTTAA
10985038 -AAAA--TTAA
1 AAAAATTTTAA
10985046 AAAAA--TTAA
1 AAAAATTTTAA
10985055 AAAAGTATTTTAA
1 AAAA--ATTTTAA
10985068 AAAAATTTTAA
1 AAAAATTTTAA
10985079 AAAAA-TTTAA
1 AAAAATTTTAA
10985089 AA
1 AA
10985091 TTAAAAAAAT
Statistics
Matches: 64, Mismatches: 2, Indels: 17
0.77 0.02 0.20
Matches are distributed among these distances:
6 2 0.03
8 4 0.06
9 12 0.19
10 7 0.11
11 21 0.33
12 10 0.16
13 8 0.12
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (11 bp):
AAAAATTTTAA
Found at i:10985050 original size:9 final size:9
Alignment explanation
Indices: 10985025--10985108 Score: 66
Period size: 9 Copynumber: 9.0 Consensus size: 9
10985015 AAAAAGTATT
10985025 TTAAAAAAA
1 TTAAAAAAA
**
10985034 TT-TTAAAA
1 TTAAAAAAA
10985042 TTAAAAAAA
1 TTAAAAAAA
10985051 TTAAAAAAGTA
1 TTAAAAAA--A
10985062 TTTTAAAAAAA
1 --TTAAAAAAA
10985073 TTTTAAAAAAA
1 --TTAAAAAAA
*
10985084 TT--TAAAA
1 TTAAAAAAA
10985091 TTAAAAAAA
1 TTAAAAAAA
10985100 TTAAAAAAA
1 TTAAAAAAA
10985109 GTATTTTAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
7 6 0.10
8 6 0.10
9 29 0.47
11 13 0.21
13 8 0.13
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.31
Consensus pattern (9 bp):
TTAAAAAAA
Found at i:10985060 original size:39 final size:38
Alignment explanation
Indices: 10985001--10985135 Score: 145
Period size: 39 Copynumber: 3.5 Consensus size: 38
10984991 TTTAAAAATA
* *
10985001 AAAAT-AAAAATTTTAAAAAGTATTTTAAAAAAATTTT
1 AAAATAAAAAAATTAAAAAAGTATTTTAAAAAAATTTT
10985038 AAAATTAAAAAAATTAAAAAAGTATTTTAAAAAAATTTT
1 AAAA-TAAAAAAATTAAAAAAGTATTTTAAAAAAATTTT
*
10985077 AAAA-AAATTTAAAATTAAAAAA--A-TTAAAAAAAGTATTTT
1 AAAATAAA---AAAATTAAAAAAGTATTTTAAAAAA--ATTTT
*
10985116 AAAATAAAAAAATAAAAAAA
1 AAAATAAAAAAATTAAAAAA
10985136 TAAAAATATA
Statistics
Matches: 86, Mismatches: 4, Indels: 16
0.81 0.04 0.15
Matches are distributed among these distances:
37 26 0.30
38 2 0.02
39 43 0.50
40 15 0.17
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (38 bp):
AAAATAAAAAAATTAAAAAAGTATTTTAAAAAAATTTT
Found at i:10985079 original size:50 final size:51
Alignment explanation
Indices: 10985010--10985119 Score: 188
Period size: 50 Copynumber: 2.2 Consensus size: 51
10985000 AAAAATAAAA
*
10985010 ATTTTAAAAAGTATTTTAAAAAAATTTTAAAATTAAAAAAATT-AAAAAAGT
1 ATTTTAAAAAGAATTTTAAAAAAA-TTTAAAATTAAAAAAATTAAAAAAAGT
10985061 ATTTTAAAAA-AATTTTAAAAAAATTTAAAATTAAAAAAATTAAAAAAAGT
1 ATTTTAAAAAGAATTTTAAAAAAATTTAAAATTAAAAAAATTAAAAAAAGT
10985111 ATTTTAAAA
1 ATTTTAAAA
10985120 TAAAAAAATA
Statistics
Matches: 57, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
49 18 0.32
50 29 0.51
51 10 0.18
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.35
Consensus pattern (51 bp):
ATTTTAAAAAGAATTTTAAAAAAATTTAAAATTAAAAAAATTAAAAAAAGT
Found at i:10985106 original size:16 final size:16
Alignment explanation
Indices: 10985075--10985106 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
10985065 TAAAAAAATT
*
10985075 TTAAAAAAATTTAAAA
1 TTAAAAAAATTAAAAA
10985091 TTAAAAAAATTAAAAA
1 TTAAAAAAATTAAAAA
10985107 AAGTATTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (16 bp):
TTAAAAAAATTAAAAA
Found at i:10985132 original size:7 final size:8
Alignment explanation
Indices: 10985116--10985141 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
10985106 AAAGTATTTT
10985116 AAAATAAA
1 AAAATAAA
10985124 AAAATAAA
1 AAAATAAA
10985132 AAAATAAA
1 AAAATAAA
10985140 AA
1 AA
10985142 TATATATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAATAAA
Found at i:10985133 original size:50 final size:49
Alignment explanation
Indices: 10985027--10985134 Score: 146
Period size: 50 Copynumber: 2.1 Consensus size: 49
10985017 AAAGTATTTT
**
10985027 AAAAAAATTTTAAAATTAAAAAAATTAAAAAAGTATTTTAAAAAAATTTT
1 AAAAAAATTTTAAAATTAAAAAAATTAAAAAAGTATTTTAAAAAAA-TAA
*
10985077 AAAAAAA-TTTAAAATTAAAAAAATTAAAAAAAGTATTTTAAAATAAAAAA
1 AAAAAAATTTTAAAATTAAAAAAATT-AAAAAAGTATTTTAAAA-AAATAA
10985127 ATAAAAAA
1 A-AAAAAA
10985135 ATAAAAATAT
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
49 18 0.35
50 25 0.48
51 9 0.17
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (49 bp):
AAAAAAATTTTAAAATTAAAAAAATTAAAAAAGTATTTTAAAAAAATAA
Found at i:11006651 original size:14 final size:14
Alignment explanation
Indices: 11006632--11006712 Score: 58
Period size: 14 Copynumber: 5.8 Consensus size: 14
11006622 ATATGTGGAT
11006632 TATATAAAAATATA
1 TATATAAAAATATA
11006646 TATATAAATAATATA
1 TATATAAA-AATATA
* ***
11006661 CATATTTTAATATA
1 TATATAAAAATATA
*
11006675 TA-A-AAACATATA
1 TATATAAAAATATA
* * *
11006687 TATATATAGATATG
1 TATATAAAAATATA
11006701 TATATATAAAAT
1 TATATA-AAAAT
11006713 TGAGTATTTA
Statistics
Matches: 49, Mismatches: 14, Indels: 7
0.70 0.20 0.10
Matches are distributed among these distances:
12 7 0.14
13 2 0.04
14 27 0.55
15 13 0.27
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (14 bp):
TATATAAAAATATA
Found at i:11006655 original size:39 final size:39
Alignment explanation
Indices: 11006612--11006699 Score: 106
Period size: 39 Copynumber: 2.2 Consensus size: 39
11006602 ATGTAGATGA
* *
11006612 AAAT-ATATACATATGTGGATTATATAAAAATATATATAT
1 AAATAATATACATAT-TGGAATATATAAAAACATATATAT
**
11006651 AAATAATATACATATTTTAATATATAAAAACATATATAT
1 AAATAATATACATATTGGAATATATAAAAACATATATAT
*
11006690 ATATAGATAT
1 AAATA-ATAT
11006700 GTATATATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
39 28 0.67
40 14 0.33
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.39
Consensus pattern (39 bp):
AAATAATATACATATTGGAATATATAAAAACATATATAT
Found at i:11006847 original size:3 final size:3
Alignment explanation
Indices: 11006841--11006891 Score: 68
Period size: 3 Copynumber: 17.3 Consensus size: 3
11006831 AAAAAAAGAC
* * *
11006841 ATA ATA ATA ACA ACA ATA ATA ATA ATA ATA ATA ATA ATA ATT A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
11006888 ATA A
1 ATA A
11006892 AATTGCTAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
2 1 0.02
3 42 0.98
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:11008602 original size:70 final size:70
Alignment explanation
Indices: 11008489--11008638 Score: 196
Period size: 70 Copynumber: 2.1 Consensus size: 70
11008479 TGTTAGAAAC
* * *
11008489 TTTAATGAAACAGGGCGTCACAGCTAGGATCTAAGTCGTGTTCAAAACGACTT-GTTTTGAGTCA
1 TTTAATGAAACAAGGCGTCACAGCTAGGATCTAAGTCGTGTTCAAAAC-AATTCATTTTGAGTCA
*
11008553 ATACCG
65 ATACCA
* ** *
11008559 TTTAATGAAACAATGCGTCGTAGCTAAGG-TCTGAGTCGTGTTCAAAACAATTCATTTTGAGTCA
1 TTTAATGAAACAAGGCGTCACAGCT-AGGATCTAAGTCGTGTTCAAAACAATTCATTTTGAGTCA
11008623 ATACCA
65 ATACCA
11008629 TTTAATGAAA
1 TTTAATGAAA
11008639 ATGGTGTGTT
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
69 3 0.04
70 64 0.91
71 3 0.04
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.31
Consensus pattern (70 bp):
TTTAATGAAACAAGGCGTCACAGCTAGGATCTAAGTCGTGTTCAAAACAATTCATTTTGAGTCAA
TACCA
Found at i:11010515 original size:17 final size:17
Alignment explanation
Indices: 11010493--11010533 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
11010483 AGGTTTCTTA
11010493 TATTTTATATTTTATT-T
1 TATTTTA-ATTTTATTAT
11010510 TATTTTAATTTTATTAT
1 TATTTTAATTTTATTAT
11010527 TATTTTA
1 TATTTTA
11010534 CTAAAGAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 8 0.35
17 15 0.65
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
TATTTTAATTTTATTAT
Found at i:11010522 original size:11 final size:10
Alignment explanation
Indices: 11010500--11010533 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 10
11010490 TTATATTTTA
11010500 TATTTTATTT
1 TATTTTATTT
11010510 TATTTTAATTT
1 TATTTT-ATTT
11010521 TATTATTATTT
1 TATT-TTATTT
11010532 TA
1 TA
11010534 CTAAAGAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 6 0.27
11 14 0.64
12 2 0.09
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (10 bp):
TATTTTATTT
Found at i:11010529 original size:6 final size:5
Alignment explanation
Indices: 11010500--11010533 Score: 50
Period size: 5 Copynumber: 6.4 Consensus size: 5
11010490 TTATATTTTA
11010500 TATTT TATTT TATTT TAATTT TATTAT TATTT TA
1 TATTT TATTT TATTT T-ATTT TATT-T TATTT TA
11010534 CTAAAGAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
5 17 0.63
6 10 0.37
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (5 bp):
TATTT
Found at i:11010608 original size:14 final size:12
Alignment explanation
Indices: 11010579--11010612 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 12
11010569 TCTCTTTCAC
11010579 TTTTTCTTTTTA
1 TTTTTCTTTTTA
11010591 TTTTTCTTTCTCTA
1 TTTTTCTTT-T-TA
11010605 TTTTTCTT
1 TTTTTCTT
11010613 CAGATTTCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 9 0.45
13 1 0.05
14 10 0.50
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTTCTTTTTA
Found at i:11011656 original size:21 final size:21
Alignment explanation
Indices: 11011632--11011705 Score: 148
Period size: 21 Copynumber: 3.5 Consensus size: 21
11011622 AAGTGTTCAT
11011632 TGATTATGTAAGTCCAGAAAA
1 TGATTATGTAAGTCCAGAAAA
11011653 TGATTATGTAAGTCCAGAAAA
1 TGATTATGTAAGTCCAGAAAA
11011674 TGATTATGTAAGTCCAGAAAA
1 TGATTATGTAAGTCCAGAAAA
11011695 TGATTATGTAA
1 TGATTATGTAA
11011706 ACTAAGTTTG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 53 1.00
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.31
Consensus pattern (21 bp):
TGATTATGTAAGTCCAGAAAA
Found at i:11011857 original size:214 final size:214
Alignment explanation
Indices: 11011488--11011875 Score: 776
Period size: 214 Copynumber: 1.8 Consensus size: 214
11011478 TAGTGATTTG
11011488 GTAAACTAAGTTTGAAATGTGAGAATGATTGGATGTGATAATTGAAAGTGTGTGCGTTGTTGTTC
1 GTAAACTAAGTTTGAAATGTGAGAATGATTGGATGTGATAATTGAAAGTGTGTGCGTTGTTGTTC
11011553 CCTCAATTTGTATCCGAATACGAATATGTCTGATTCTGACTCTGAATCTACTAAATTGTACTAAT
66 CCTCAATTTGTATCCGAATACGAATATGTCTGATTCTGACTCTGAATCTACTAAATTGTACTAAT
11011618 TACAAAGTGTTCATTGATTATGTAAGTCCAGAAAATGATTATGTAAGTCCAGAAAATGATTATGT
131 TACAAAGTGTTCATTGATTATGTAAGTCCAGAAAATGATTATGTAAGTCCAGAAAATGATTATGT
11011683 AAGTCCAGAAAATGATTAT
196 AAGTCCAGAAAATGATTAT
11011702 GTAAACTAAGTTTGAAATGTGAGAATGATTGGATGTGATAATTGAAAGTGTGTGCGTTGTTGTTC
1 GTAAACTAAGTTTGAAATGTGAGAATGATTGGATGTGATAATTGAAAGTGTGTGCGTTGTTGTTC
11011767 CCTCAATTTGTATCCGAATACGAATATGTCTGATTCTGACTCTGAATCTACTAAATTGTACTAAT
66 CCTCAATTTGTATCCGAATACGAATATGTCTGATTCTGACTCTGAATCTACTAAATTGTACTAAT
11011832 TACAAAGTGTTCATTGATTATGTAAGTCCAGAAAATGATTATGT
131 TACAAAGTGTTCATTGATTATGTAAGTCCAGAAAATGATTATGT
11011876 TCAATTCTGT
Statistics
Matches: 174, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
214 174 1.00
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.36
Consensus pattern (214 bp):
GTAAACTAAGTTTGAAATGTGAGAATGATTGGATGTGATAATTGAAAGTGTGTGCGTTGTTGTTC
CCTCAATTTGTATCCGAATACGAATATGTCTGATTCTGACTCTGAATCTACTAAATTGTACTAAT
TACAAAGTGTTCATTGATTATGTAAGTCCAGAAAATGATTATGTAAGTCCAGAAAATGATTATGT
AAGTCCAGAAAATGATTAT
Found at i:11014133 original size:14 final size:14
Alignment explanation
Indices: 11014111--11014140 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
11014101 TATACTTAGT
11014111 TTAACTTTAATTAA
1 TTAACTTTAATTAA
*
11014125 TTAAGTTTAATTAA
1 TTAACTTTAATTAA
11014139 TT
1 TT
11014141 TAATCTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.53
Consensus pattern (14 bp):
TTAACTTTAATTAA
Found at i:11018140 original size:21 final size:21
Alignment explanation
Indices: 11018116--11018189 Score: 148
Period size: 21 Copynumber: 3.5 Consensus size: 21
11018106 AAGTGTTCAT
11018116 TGATTATGTAAGTCCAGAAAA
1 TGATTATGTAAGTCCAGAAAA
11018137 TGATTATGTAAGTCCAGAAAA
1 TGATTATGTAAGTCCAGAAAA
11018158 TGATTATGTAAGTCCAGAAAA
1 TGATTATGTAAGTCCAGAAAA
11018179 TGATTATGTAA
1 TGATTATGTAA
11018190 ACTAAGTTTG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 53 1.00
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.31
Consensus pattern (21 bp):
TGATTATGTAAGTCCAGAAAA
Found at i:11020617 original size:14 final size:14
Alignment explanation
Indices: 11020595--11020624 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
11020585 TATACTTAGT
11020595 TTAACTTTAATTAA
1 TTAACTTTAATTAA
*
11020609 TTAAGTTTAATTAA
1 TTAACTTTAATTAA
11020623 TT
1 TT
11020625 TAATCTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.53
Consensus pattern (14 bp):
TTAACTTTAATTAA
Found at i:11024997 original size:10 final size:10
Alignment explanation
Indices: 11024982--11025140 Score: 83
Period size: 10 Copynumber: 16.3 Consensus size: 10
11024972 GAATGAGAGG
11024982 GAAAGAAGAA
1 GAAAGAAGAA
11024992 GAAAG-A-AA
1 GAAAGAAGAA
11025000 GAAAG-A-AA
1 GAAAGAAGAA
11025008 GAAAGAA-AA
1 GAAAGAAGAA
11025017 GGAAAGAA-AA
1 -GAAAGAAGAA
* *
11025027 GGAAAGGAGAG
1 -GAAAGAAGAA
11025038 GAAAGAAAGAA
1 GAAAG-AAGAA
11025049 -AAAGAAGGAA
1 GAAAGAA-GAA
*
11025059 -AGGAGAAGAA
1 GA-AAGAAGAA
*
11025069 GAAAAAAGAAA
1 GAAAGAAG-AA
11025080 GAAA-AAGAA
1 GAAAGAAGAA
11025089 GGAAAGAA-AA
1 -GAAAGAAGAA
*
11025099 GGAAAGGAGAA
1 -GAAAGAAGAA
11025110 GAGAAG-AGAA
1 GA-AAGAAGAA
*
11025120 -AAA-AAAAA
1 GAAAGAAGAA
*
11025128 GAAAGAAAAA
1 GAAAGAAGAA
11025138 GAA
1 GAA
11025141 GAGGAAATGA
Statistics
Matches: 125, Mismatches: 9, Indels: 30
0.76 0.05 0.18
Matches are distributed among these distances:
8 20 0.16
9 12 0.10
10 71 0.57
11 22 0.18
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (10 bp):
GAAAGAAGAA
Found at i:11025047 original size:34 final size:34
Alignment explanation
Indices: 11025004--11025172 Score: 135
Period size: 34 Copynumber: 4.7 Consensus size: 34
11024994 AAGAAAGAAA
*
11025004 GAAAGAAAGAAAAGGAAAGAAAAGGAAAGGAGAG
1 GAAAGAAAGAAAAAGAAAGAAAAGGAAAGGAGAG
* * *
11025038 GAAAGAAAGAAAAAG-AAGGAAAGGAGAAGAAGAA
1 GAAAGAAAGAAAAAGAAAGAAAAGGA-AAGGAGAG
*
11025072 AAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAG
1 GAAAGAAAG--AAA-AA-GAAAGAAAAGGAAAGGAG-AG
* * * *
11025111 AGAAGAGAAAAAAAAAAGAAAGAAAAAGAAGAGGAAAT
1 -GAA-AG-AAAGAAAAAGAAAGAAAAGGAA-AGGAGAG
* *
11025149 GAAGGAAAAAAAAAGAAA-AAAAGG
1 GAAAGAAAGAAAAAGAAAGAAAAGG
11025173 TAATTTTTAT
Statistics
Matches: 109, Mismatches: 15, Indels: 22
0.75 0.10 0.15
Matches are distributed among these distances:
33 9 0.08
34 33 0.30
35 13 0.12
36 4 0.04
37 5 0.05
38 19 0.17
39 16 0.15
40 5 0.05
41 2 0.02
42 3 0.03
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.01
Consensus pattern (34 bp):
GAAAGAAAGAAAAAGAAAGAAAAGGAAAGGAGAG
Found at i:11025092 original size:52 final size:52
Alignment explanation
Indices: 11025001--11025098 Score: 50
Period size: 52 Copynumber: 1.9 Consensus size: 52
11024991 AGAAAGAAAG
*
11025001 AAAGAAAGAAAGAA-AAGGAAAGAAAAGGAAAGGAG-AG-GAA-AGAAAGAAAA
1 AAAGAAAGAAA-AAGAAGGAAAGAAAAGGAAAGAAGAAGAGAAGAGAAA-AAAA
* * * *
11025051 AGAAGGAAAGGAGAAGAA-GAAAAAAGAAAGAAA-AAGAAG-GAA-AGAAAA
1 A-AA-GAAAGAAAAAGAAGGAAAGAA-AAGGAAAGAAGAAGAGAAGAGAAAA
11025099 GGAAAGGAGA
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
50 1 0.03
51 13 0.34
52 24 0.63
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (52 bp):
AAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGAAGAAGAGAAGAGAAAAAAA
Found at i:11025094 original size:72 final size:74
Alignment explanation
Indices: 11024981--11025172 Score: 229
Period size: 72 Copynumber: 2.6 Consensus size: 74
11024971 AGAATGAGAG
11024981 GGAAAGAAGAAGAAAGAAAGAAAGAAAGAAAGAAAAGGAAAGAAAAGGAAAGGAG-AG-GAA-AG
1 GGAAAGAAGAAG-AAGAAAGAAAGAAAGAAAGAAAAGGAAAGAAAAGGAAAGGAGAAGAGAAGAG
11025043 AAAGAAAAAGAA
65 AAA-AAAAA-AA
*
11025055 GGAAAGGAGAAGAAGAAA-AAAGAAAGAAA-AAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAGAG
1 GGAAAGAAGAAGAAGAAAGAAAGAAAGAAAGAA-AAGGAAAGAAAAGGAAAGGAGAAGAGAAGAG
11025118 AAAAAAAAAA
65 AAAAAAAAAA
* * * * *
11025128 -GAAAGAAAAAGAAG-AGGAAATGAAGGAAAAAAAAAGAAA-AAAAGG
1 GGAAAGAAGAAGAAGAAAGAAA-GAAAGAAAGAAAAGGAAAGAAAAGG
11025173 TAATTTTTAT
Statistics
Matches: 105, Mismatches: 6, Indels: 16
0.83 0.05 0.13
Matches are distributed among these distances:
71 3 0.03
72 53 0.50
73 23 0.22
74 21 0.20
75 5 0.05
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.01
Consensus pattern (74 bp):
GGAAAGAAGAAGAAGAAAGAAAGAAAGAAAGAAAAGGAAAGAAAAGGAAAGGAGAAGAGAAGAGA
AAAAAAAAA
Found at i:11025169 original size:44 final size:44
Alignment explanation
Indices: 11024983--11025170 Score: 152
Period size: 44 Copynumber: 4.2 Consensus size: 44
11024973 AATGAGAGGG
* * *
11024983 AAAGAAGAAGAAAGAAAGAAAGAAAGAAAGAAAAGGA-AAGAAAAGGA
1 AAAGAA-AAAAAAGAAAG-AA-AAAGAAAGGAAAGGAGAAGAAAA-AA
* * ** *
11025030 AAGGAGAGGAAAGAAAGAAAAAG-AAGGAAAGGAGAAGAAGAAA
1 AAAGAAAAAAAAGAAAGAAAAAGAAAGGAAAGGAGAAGAAAAAA
* * * *
11025073 AAAGAAAGAAAAAGAAGGAAAGA-AAAGGAAAGGAGAAGAGAAGA
1 AAAGAAA-AAAAAGAAAGAAAAAGAAAGGAAAGGAGAAGAAAAAA
* * *
11025117 GAA-AAAAAAAAGAAAGAAAAAGAAGAGGAAATGA-AGGAAAAAA
1 AAAGAAAAAAAAGAAAGAAAAAGAA-AGGAAAGGAGAAGAAAAAA
11025160 AAAGAAAAAAA
1 AAAGAAAAAAA
11025171 GGTAATTTTT
Statistics
Matches: 112, Mismatches: 23, Indels: 15
0.75 0.15 0.10
Matches are distributed among these distances:
42 13 0.12
43 28 0.25
44 55 0.49
45 2 0.02
46 10 0.09
47 4 0.04
ACGTcount: A:0.71, C:0.00, G:0.28, T:0.01
Consensus pattern (44 bp):
AAAGAAAAAAAAGAAAGAAAAAGAAAGGAAAGGAGAAGAAAAAA
Found at i:11026079 original size:318 final size:318
Alignment explanation
Indices: 11025497--11026269 Score: 1296
Period size: 318 Copynumber: 2.4 Consensus size: 318
11025487 GATTATATAT
* * * *
11025497 TTAACAAATTTCAAACATTATACACTAAAATAATGTAAAATGATAAAATTAGAAATTACGAA-AA
1 TTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATGATAAAATTAGAAATTAC-AATAT
* *
11025561 TTTTTAAAATAATATAATACGGATAAAAAAATACGAACAAATGGCCGAAATAAGAGTGTATTACT
65 TTTTTAAAATAATATAATGCGGATAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTATTACT
* * * *
11025626 AACTTTTTTAAAAATTCAGAAATAATTAATACAAAAATTTCAAACAAAATGCACTGAAACAGTAT
130 AACTTTTTAAAAAATTCAGAAATAATTAATACAAAAATTTCAAAAAAAATGAACTGAAACAATAT
* *
11025691 AAAATAATAAAATACAAAAATAATATATTTTTATTGAAAGTAATAAAAATCAGAAAAATAATACG
195 AAAATAATAAAATACAAAAATAATATATTTTTACTGAAAGGAATAAAAATCAGAAAAATAATACG
11025756 AGCAAAGGCAGGGATAAGGTTTTTTTCTTACACCAAATTAATTTAAAAAACACACTAAA
260 AGCAAAGGCAGGGATAAGGTTTTTTTCTTACACCAAATTAATTTAAAAAACACACTAAA
*
11025815 TTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATGATAAATTTAGAAATTACAATATT
1 TTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATGATAAAATTAGAAATTACAATATT
* *
11025880 TTTTAAAATAATAAAATGCGGATAAAAAAATACGAACAAATGGTCGAAGTAAGAGTGTATTACTA
66 TTTTAAAATAATATAATGCGGATAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTATTACTA
* *
11025945 ACTTTTTAAAAAATTCAGAAATAATTAATATAAAAATTTCAAAAAAAATGAACTGAAATAATATA
131 ACTTTTTAAAAAATTCAGAAATAATTAATACAAAAATTTCAAAAAAAATGAACTGAAACAATATA
* *
11026010 AAATAATAAAATACAAAAATAATATATTTTTACTGAAAGGAATAAAAATCGGGAAAATAATACGA
196 AAATAATAAAATACAAAAATAATATATTTTTACTGAAAGGAATAAAAATCAGAAAAATAATACGA
*
11026075 GCAAAGGTAGGGATAAGGTTTTTTTCTTACACCAAATTAATTTAAAAAACACACTAAA
261 GCAAAGGCAGGGATAAGGTTTTTTTCTTACACCAAATTAATTTAAAAAACACACTAAA
* * *
11026133 TTAATAAATTTAAAAAATTATGCACTGAAATAATGTAAAATGATAAAATTAGAAATTACGATATT
1 TTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATGATAAAATTAGAAATTACAATATT
* * *
11026198 TTTTAGAGTAATATAATGCAGATAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTATTACTA
66 TTTTAAAATAATATAATGCGGATAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTATTACTA
11026263 ACTTTTT
131 ACTTTTT
11026270 TAAGATTATA
Statistics
Matches: 425, Mismatches: 29, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
317 2 0.00
318 423 1.00
ACGTcount: A:0.51, C:0.09, G:0.10, T:0.29
Consensus pattern (318 bp):
TTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATGATAAAATTAGAAATTACAATATT
TTTTAAAATAATATAATGCGGATAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTATTACTA
ACTTTTTAAAAAATTCAGAAATAATTAATACAAAAATTTCAAAAAAAATGAACTGAAACAATATA
AAATAATAAAATACAAAAATAATATATTTTTACTGAAAGGAATAAAAATCAGAAAAATAATACGA
GCAAAGGCAGGGATAAGGTTTTTTTCTTACACCAAATTAATTTAAAAAACACACTAAA
Found at i:11026409 original size:150 final size:150
Alignment explanation
Indices: 11025495--11026742 Score: 729
Period size: 160 Copynumber: 8.0 Consensus size: 150
11025485 AAGATTATAT
* *
11025495 ATTTAACAAATTTCAAACATTATACACTAAAATAATGTAAAATGATAAAATTAGAAATTACGAAA
1 ATTTAAAAAATTTCAAACATTATACACTGAAATAATGTAAAATGATAAAATTAGAAATTAC-AAA
11025560 ATTTTTAAAATAATATAATACGGATAAAAAAATACGAACAAATGGCCGAAATAAGAGTGTATTAC
65 ATTTTTAAAATAATATAATACGGATAAAAAAATACGAACAAATGGCCGAAATAAGAGTGTATTAC
11025625 TAACTTTTTTAAAAATTCAGAAATA
130 TAAC-TTTTTAAAAATT---AAATA
** * * * * * * *
11025650 ATTAATACAAAAATTTCAAACAAAATGCACTGAAACAGTATAAAATAATAAAA-TACAAAAATA-
1 ATT--TA-AAAAATTTCAAACATTATACACTGAAATAATGTAAAATGATAAAATTA-GAAATTAC
* * * * * * **
11025713 ATATATTTTTATTGAAAGTAATA-AAAATCAGA-AAAATAATACGAGCAAA-GGCAGGGATAAG-
62 A-AAATTTTTA---AAA-TAATATAATA-CGGATAAAAAAATACGAACAAATGGCCGAAATAAGA
* * * ** *
11025774 GTTTTTTTCTTACACCAAATTAATTTAAAAAACACACTA
121 GTGTATTAC-TA-A-C---TT--TTTAAAAATTA-AATA
* * * *
11025813 AATTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATGATAAATTTAGAAATTACAATA
1 ATTTAAAAAATTTCAAACATTATACACTGAAATAATGTAAAATGATAAAATTAGAAATTACAA-A
* * * * *
11025878 TTTTTTAAAATAATAAAATGCGGATAAAAAAATACGAACAAATGGTCGAAGTAAGAGTGTATTAC
65 ATTTTTAAAATAATATAATACGGATAAAAAAATACGAACAAATGGCCGAAATAAGAGTGTATTAC
11025943 TAACTTTTTAAAAAATTCAGAAATA
130 TAACTTTTT-AAAAATT---AAATA
* ** * * * *
11025968 ATTAATATAAAAATTTCAAAAAAAATGA-ACTGAAATAATATAAAATAATAAAA-TACAAAAATA
1 ATT--TA-AAAAATTTCAAACATTAT-ACACTGAAATAATGTAAAATGATAAAATTA-GAAATTA
* * * * * * ** **
11026031 -ATATATTTTTACTGAAAGGAATA-AAAATCGG-GAAAATAATACGAGCAAA-GGTAGGGATAAG
61 CA-AAATTTTTA---AAA-TAATATAATA-CGGATAAAAAAATACGAACAAATGGCCGAAATAAG
* * * ** *
11026092 -GTTTTTTTCTTACACCAAATTAATTTAAAAAACACACTA
120 AGTGTATTAC-TA-A-C---TT--TTTAAAAATTA-AATA
* * * * * *
11026131 AATTAATAAATTTAAAAAATTATGCACTGAAATAATGTAAAATGATAAAATTAGAAATTACGATA
1 ATTTAAAAAATTTCAAACATTATACACTGAAATAATGTAAAATGATAAAATTAGAAATTAC-AAA
* * * * * *
11026196 TTTTTTAGAGTAATATAATGCAGATAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTATTAC
65 ATTTTTAAAATAATATAATACGGATAAAAAAATACGAACAAATGGCCGAAATAAGAGTGTATTAC
* * *
11026261 TAACTTTTTTAAGATTATAT-
130 TAACTTTTTAAAAATTAAATA
* *
11026281 ATTTAACAAATTTCAAACATTATACACTAAAATAATGTAAAATGATAAAATTAGAAATTACGAAA
1 ATTTAAAAAATTTCAAACATTATACACTGAAATAATGTAAAATGATAAAATTAGAAATTAC-AAA
11026346 ATTTTTAAAATAATATAATACGGATAAAAAAATACGAACAAATGGCCGAAATAAGAGTGTATTAC
65 ATTTTTAAAATAATATAATACGGATAAAAAAATACGAACAAATGGCCGAAATAAGAGTGTATTAC
11026411 TAACTTTTTTAAAAATTCAGAAATA
130 TAAC-TTTTTAAAAATT---AAATA
** * * * * * * *
11026436 ATTAATACAAAAATTTCAAACAAAATGCACTGAAACAGTATAAAATAATAAAA-TACAAAAATA-
1 ATT--TA-AAAAATTTCAAACATTATACACTGAAATAATGTAAAATGATAAAATTA-GAAATTAC
* * * * * *
11026499 ATATATTTTTATTGAAAGTAATA-AAAATCGG-GAAAATAATACGAGCAAA-GGCACG-GATAAG
62 A-AAATTTTTA---AAA-TAATATAATA-CGGATAAAAAAATACGAACAAATGGC-CGAAATAAG
* * * ** *
11026560 -GTTTTTTTCTTACACCAAATTAATTTAAAAAACACACTA
120 AGTGTATTAC-TA-A-C---TT--TTTAAAAATTA-AATA
* * * *
11026599 AATTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATGATAAATTTAGAAATTACAATA
1 ATTTAAAAAATTTCAAACATTATACACTGAAATAATGTAAAATGATAAAATTAGAAATTACAA-A
* * * * *
11026664 TTTTTTAAAATAATAAAATGCGGATAAAAAAATACGAACAAATGGTCGAAGTAAGAGTGTATTAC
65 ATTTTTAAAATAATATAATACGGATAAAAAAATACGAACAAATGGCCGAAATAAGAGTGTATTAC
11026729 TAACTTTTTAAAAA
130 TAACTTTTTAAAAA
11026743 AATATAATGC
Statistics
Matches: 820, Mismatches: 184, Indels: 181
0.69 0.16 0.15
Matches are distributed among these distances:
150 121 0.15
151 11 0.01
152 18 0.02
153 5 0.01
154 9 0.01
155 11 0.01
156 3 0.00
157 60 0.07
158 205 0.25
159 57 0.07
160 213 0.26
161 58 0.07
162 4 0.00
163 19 0.02
164 2 0.00
165 21 0.03
166 3 0.00
ACGTcount: A:0.51, C:0.09, G:0.10, T:0.29
Consensus pattern (150 bp):
ATTTAAAAAATTTCAAACATTATACACTGAAATAATGTAAAATGATAAAATTAGAAATTACAAAA
TTTTTAAAATAATATAATACGGATAAAAAAATACGAACAAATGGCCGAAATAAGAGTGTATTACT
AACTTTTTAAAAATTAAATA
Found at i:11026415 original size:468 final size:468
Alignment explanation
Indices: 11025815--11026737 Score: 1578
Period size: 468 Copynumber: 2.0 Consensus size: 468
11025805 ACACACTAAA
* * * * *
11025815 TTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATGATAAATTTAGAAATTACAATATT
1 TTAACAAATTTCAAACATTATACACTAAAATAATGTAAAATGATAAAATTAGAAATTACAATAAT
* * *
11025880 TTTTAAAATAATAAAATGCGGATAAAAAAATACGAACAAATGGTCGAAGTAAGAGTGTATTACTA
66 TTTTAAAATAATAAAATACGGATAAAAAAATACGAACAAATGGCCGAAATAAGAGTGTATTACTA
* *
11025945 ACTTTTTAAAAAATTCAGAAATAATTAATATAAAAATTTCAAAAAAAATGAACTGAAATAATATA
131 ACTTTTTAAAAAATTCAGAAATAATTAATACAAAAATTTCAAAAAAAATGAACTGAAACAATATA
11026010 AAATAATAAAATACAAAAATAATATATTTTTACTGAAAGGAATAAAAATCGGGAAAATAATACGA
196 AAATAATAAAATACAAAAATAATATATTTTTACTGAAAGGAATAAAAATCGGGAAAATAATACGA
* *
11026075 GCAAAGGTAGGGATAAGGTTTTTTTCTTACACCAAATTAATTTAAAAAACACACTAAATTAATAA
261 GCAAAGGCACGGATAAGGTTTTTTTCTTACACCAAATTAATTTAAAAAACACACTAAATTAATAA
* *
11026140 ATTTAAAAAATTATGCACTGAAATAATGTAAAATGATAAAATTAGAAATTACGATATTTTTTAGA
326 ATTTAAAAAATTATGCACTGAAATAATGTAAAATGATAAAATTAGAAATTACAATATTTTTTAAA
* *
11026205 GTAATATAATGCAGATAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTATTACTAACTTTTT
391 ATAATAAAATGCAGATAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTATTACTAACTTTTT
11026270 TAAGATTATATAT
456 TAAGATTATATAT
11026283 TTAACAAATTTCAAACATTATACACTAAAATAATGTAAAATGATAAAATTAGAAATTACGAA-AA
1 TTAACAAATTTCAAACATTATACACTAAAATAATGTAAAATGATAAAATTAGAAATTAC-AATAA
*
11026347 TTTTTAAAATAATATAATACGGATAAAAAAATACGAACAAATGGCCGAAATAAGAGTGTATTACT
65 TTTTTAAAATAATAAAATACGGATAAAAAAATACGAACAAATGGCCGAAATAAGAGTGTATTACT
* * * *
11026412 AACTTTTTTAAAAATTCAGAAATAATTAATACAAAAATTTCAAACAAAATGCACTGAAACAGTAT
130 AACTTTTTAAAAAATTCAGAAATAATTAATACAAAAATTTCAAAAAAAATGAACTGAAACAATAT
* *
11026477 AAAATAATAAAATACAAAAATAATATATTTTTATTGAAAGTAATAAAAATCGGGAAAATAATACG
195 AAAATAATAAAATACAAAAATAATATATTTTTACTGAAAGGAATAAAAATCGGGAAAATAATACG
11026542 AGCAAAGGCACGGATAAGGTTTTTTTCTTACACCAAATTAATTTAAAAAACACACTAAATTAATA
260 AGCAAAGGCACGGATAAGGTTTTTTTCTTACACCAAATTAATTTAAAAAACACACTAAATTAATA
* * *
11026607 AATTTCAAACATTATGCACTGAAATAATGTAAAATGATAAATTTAGAAATTACAATATTTTTTAA
325 AATTTAAAAAATTATGCACTGAAATAATGTAAAATGATAAAATTAGAAATTACAATATTTTTTAA
* *
11026672 AATAATAAAATGCGGATAAAAAAATACGAACAAATGGTCGAAGTAAGAGTGTATTACTAACTTTT
390 AATAATAAAATGCAGATAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTATTACTAACTTTT
11026737 T
455 T
11026738 AAAAAAATAT
Statistics
Matches: 426, Mismatches: 28, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
468 424 1.00
469 2 0.00
ACGTcount: A:0.51, C:0.09, G:0.11, T:0.30
Consensus pattern (468 bp):
TTAACAAATTTCAAACATTATACACTAAAATAATGTAAAATGATAAAATTAGAAATTACAATAAT
TTTTAAAATAATAAAATACGGATAAAAAAATACGAACAAATGGCCGAAATAAGAGTGTATTACTA
ACTTTTTAAAAAATTCAGAAATAATTAATACAAAAATTTCAAAAAAAATGAACTGAAACAATATA
AAATAATAAAATACAAAAATAATATATTTTTACTGAAAGGAATAAAAATCGGGAAAATAATACGA
GCAAAGGCACGGATAAGGTTTTTTTCTTACACCAAATTAATTTAAAAAACACACTAAATTAATAA
ATTTAAAAAATTATGCACTGAAATAATGTAAAATGATAAAATTAGAAATTACAATATTTTTTAAA
ATAATAAAATGCAGATAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTATTACTAACTTTTT
TAAGATTATATAT
Found at i:11026737 original size:69 final size:69
Alignment explanation
Indices: 11026655--11026811 Score: 255
Period size: 68 Copynumber: 2.3 Consensus size: 69
11026645 AAATTTAGAA
* *
11026655 ATTAC-AATATTTTTTAAAATAATAAAATGCGGATAAAAAAATACGAACAAATGGTCGAAGTAAG
1 ATTACTAA-ATTTTTTAAAAAAATAAAATGCGGATAAAAAAATACGAACAAATGGCCGAAGTAAG
11026719 AGTGT
65 AGTGT
* *
11026724 ATTACT-AACTTTTTAAAAAAATATAATGCGGATAAAAAAATACGAACAAATGGCCGAAGTAAGA
1 ATTACTAAATTTTTTAAAAAAATAAAATGCGGATAAAAAAATACGAACAAATGGCCGAAGTAAGA
11026788 GTGT
66 GTGT
11026792 ATTACTAAATTTTTTAAAAA
1 ATTACTAAATTTTTTAAAAA
11026812 TTTAGAAATA
Statistics
Matches: 81, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
68 63 0.78
69 18 0.22
ACGTcount: A:0.49, C:0.08, G:0.14, T:0.29
Consensus pattern (69 bp):
ATTACTAAATTTTTTAAAAAAATAAAATGCGGATAAAAAAATACGAACAAATGGCCGAAGTAAGA
GTGT
Found at i:11027035 original size:160 final size:160
Alignment explanation
Indices: 11026846--11027358 Score: 473
Period size: 160 Copynumber: 3.2 Consensus size: 160
11026836 TTCAAACAAA
11026846 ATGCACTGAAATAATATAAAATAATAAAATACAAAAATAATATATTTTTACTGAAAGTAATAAAA
1 ATGCACTGAAATAATATAAAATAATAAAATACAAAAATAATATATTTTTACTGAAAGTAATAAAA
*
11026911 ATCGGGAAAATAATACGAGCAAAGGTAGGGATAAGGTTTTTTTCTTACACCAAATTAATTTAAAA
66 ATCGGGAAAATAATACGAGCAAAGGGAGGGATAAGGTTTTTTTCTTACACCAAATTAATTTAAAA
11026976 AACACACTAAATTAATAAATTTAAAAAATT
131 AACACACTAAATTAATAAATTTAAAAAATT
* * * * ** * *
11027006 ATGCACTGAAATAATGTAAAATGATAAAATTA-GAAATTACGATATTTTT--T-AGAGTAAT-AT
1 ATGCACTGAAATAATATAAAATAATAAAA-TACAAAAATAATATATTTTTACTGAAAGTAATAAA
** * * * ** * * * * *
11027066 AATGCAGATAAAAAAATACGAACAAATGGCCGAAGTAAGAG----TGTATT--ACTAAATT-TTT
65 AAT-C-GGGAAAATAATACGAGCAAAGGGAGGGA-TAAG-GTTTTTTTCTTACACCAAATTAATT
* *
11027124 TAAAAATTTAGA-AAT-AATTAATACAAATATTTCAAACAAA--
126 TAAAAA---ACACACTAAATTAAT---AA-ATTT-AAA-AAATT
*
11027164 ATGCACTGAAATAATATAAAATAATAAAATACAAAAATAATATATTTTTACTGAAAATAATAAAA
1 ATGCACTGAAATAATATAAAATAATAAAATACAAAAATAATATATTTTTACTGAAAGTAATAAAA
* *
11027229 ATTGGGAAAATAATATGAGCAAAGGGCAGGGATAAGGGTTTTTTCTTTCTTACACCAAATTAATT
66 ATCGGGAAAATAATACGAGCAAAGGG-AGGGATAA-GG--TTTT-TTTCTTACACCAAATTAATT
* *
11027294 TAAAAAACACACTAAATTAATAAATTTCAAACATT
126 TAAAAAACACACTAAATTAATAAATTTAAAAAATT
* *
11027329 ATGCACTGAAATAATGTAAAATGATAAAAT
1 ATGCACTGAAATAATATAAAATAATAAAAT
11027359 TAGAAATTAC
Statistics
Matches: 266, Mismatches: 52, Indels: 65
0.69 0.14 0.17
Matches are distributed among these distances:
153 8 0.03
154 14 0.05
155 2 0.01
156 10 0.04
157 12 0.05
158 64 0.24
159 7 0.03
160 66 0.25
161 11 0.04
162 4 0.02
163 2 0.01
164 2 0.01
165 32 0.12
166 2 0.01
167 6 0.02
168 2 0.01
169 14 0.05
170 8 0.03
ACGTcount: A:0.51, C:0.09, G:0.11, T:0.30
Consensus pattern (160 bp):
ATGCACTGAAATAATATAAAATAATAAAATACAAAAATAATATATTTTTACTGAAAGTAATAAAA
ATCGGGAAAATAATACGAGCAAAGGGAGGGATAAGGTTTTTTTCTTACACCAAATTAATTTAAAA
AACACACTAAATTAATAAATTTAAAAAATT
Found at i:11027078 original size:386 final size:386
Alignment explanation
Indices: 11026344--11027129 Score: 1374
Period size: 386 Copynumber: 2.0 Consensus size: 386
11026334 GAAATTACGA
*
11026344 AAATTTTTAAAATAATATAATACGGATAAAAAAATACGAACAAATGGCCGAAATAAGAGTGTATT
1 AAATTTTTAAAAAAATATAATACGGATAAAAAAATACGAACAAATGGCCGAAATAAGAGTGTATT
* *
11026409 ACTAACTTTTTTAAAAATTCAGAAATAATTAATACAAAAATTTCAAACAAAATGCACTGAAACAG
66 ACTAAATTTTTTAAAAATTCAGAAATAATTAATACAAAAATTTCAAACAAAATGCACTGAAACAA
*
11026474 TATAAAATAATAAAATACAAAAATAATATATTTTTATTGAAAGTAATAAAAATCGGGAAAATAAT
131 TATAAAATAATAAAATACAAAAATAATATATTTTTACTGAAAGTAATAAAAATCGGGAAAATAAT
11026539 ACGAGCAAAGGCACGGATAAGGTTTTTTTCTTACACCAAATTAATTTAAAAAACACACTAAATTA
196 ACGAGCAAAGGCACGGATAAGGTTTTTTTCTTACACCAAATTAATTTAAAAAACACACTAAATTA
* * *
11026604 ATAAATTTCAAACATTATGCACTGAAATAATGTAAAATGATAAATTTAGAAATTACAATATTTTT
261 ATAAATTTAAAAAATTATGCACTGAAATAATGTAAAATGATAAAATTAGAAATTACAATATTTTT
* *
11026669 TAAAATAATAAAATGCGGATAAAAAAATACGAACAAATGGTCGAAGTAAGAGTGTATTACT
326 TAAAATAATAAAATGCAGATAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTATTACT
* * *
11026730 AACTTTTTAAAAAAATATAATGCGGATAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTATT
1 AAATTTTTAAAAAAATATAATACGGATAAAAAAATACGAACAAATGGCCGAAATAAGAGTGTATT
* * *
11026795 ACTAAATTTTTTAAAAATTTAGAAATAATTAATACAAATATTTCAAACAAAATGCACTGAAATAA
66 ACTAAATTTTTTAAAAATTCAGAAATAATTAATACAAAAATTTCAAACAAAATGCACTGAAACAA
11026860 TATAAAATAATAAAATACAAAAATAATATATTTTTACTGAAAGTAATAAAAATCGGGAAAATAAT
131 TATAAAATAATAAAATACAAAAATAATATATTTTTACTGAAAGTAATAAAAATCGGGAAAATAAT
* *
11026925 ACGAGCAAAGGTAGGGATAAGGTTTTTTTCTTACACCAAATTAATTTAAAAAACACACTAAATTA
196 ACGAGCAAAGGCACGGATAAGGTTTTTTTCTTACACCAAATTAATTTAAAAAACACACTAAATTA
*
11026990 ATAAATTTAAAAAATTATGCACTGAAATAATGTAAAATGATAAAATTAGAAATTACGATATTTTT
261 ATAAATTTAAAAAATTATGCACTGAAATAATGTAAAATGATAAAATTAGAAATTACAATATTTTT
* * *
11027055 TAGAGTAATATAATGCAGATAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTATTACT
326 TAAAATAATAAAATGCAGATAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTATTACT
*
11027116 AAATTTTTTAAAAA
1 AAATTTTTAAAAAA
11027130 TTTAGAAATA
Statistics
Matches: 377, Mismatches: 23, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
386 377 1.00
ACGTcount: A:0.51, C:0.09, G:0.11, T:0.29
Consensus pattern (386 bp):
AAATTTTTAAAAAAATATAATACGGATAAAAAAATACGAACAAATGGCCGAAATAAGAGTGTATT
ACTAAATTTTTTAAAAATTCAGAAATAATTAATACAAAAATTTCAAACAAAATGCACTGAAACAA
TATAAAATAATAAAATACAAAAATAATATATTTTTACTGAAAGTAATAAAAATCGGGAAAATAAT
ACGAGCAAAGGCACGGATAAGGTTTTTTTCTTACACCAAATTAATTTAAAAAACACACTAAATTA
ATAAATTTAAAAAATTATGCACTGAAATAATGTAAAATGATAAAATTAGAAATTACAATATTTTT
TAAAATAATAAAATGCAGATAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTATTACT
Found at i:11032817 original size:18 final size:19
Alignment explanation
Indices: 11032777--11032831 Score: 60
Period size: 18 Copynumber: 2.9 Consensus size: 19
11032767 TTACAAATTT
*
11032777 TAAAAATGATA-AAAATAC
1 TAAAAATGACATAAAATAC
*
11032795 AAAAAATGACATAAAA-AC
1 TAAAAATGACATAAAATAC
11032813 TAAAAATGGTACATAAAAT
1 TAAAAAT-G-ACATAAAAT
11032832 TATTAACCCT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 17 0.57
19 5 0.17
20 8 0.27
ACGTcount: A:0.65, C:0.07, G:0.07, T:0.20
Consensus pattern (19 bp):
TAAAAATGACATAAAATAC
Found at i:11032911 original size:4 final size:4
Alignment explanation
Indices: 11032902--11032930 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
11032892 CTAAAGCATA
11032902 ATCC ATCC ATCC ATCC ATCC AT-C ATCC AT
1 ATCC ATCC ATCC ATCC ATCC ATCC ATCC AT
11032931 GACCTTAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
3 3 0.12
4 21 0.88
ACGTcount: A:0.28, C:0.45, G:0.00, T:0.28
Consensus pattern (4 bp):
ATCC
Found at i:11037154 original size:39 final size:39
Alignment explanation
Indices: 11037020--11037154 Score: 128
Period size: 40 Copynumber: 3.4 Consensus size: 39
11037010 GTTTGGAACA
**
11037020 AAAGCGCCACAAAAAATAGAGCATTAGCGGCGATTTAGCC
1 AAAGCGCCACAAAAAATAGAGCATTAGCGGCG-TTTATAC
* ** *
11037060 AAAGCGCCACTAAAGGTAGAGCATCAGCGGCGTTTATAC
1 AAAGCGCCACAAAAAATAGAGCATTAGCGGCGTTTATAC
* * * * * *
11037099 GGAAGCGCCGCTAAAAATAG-GAATTAACGGCGTTTTATAT
1 -AAAGCGCCACAAAAAATAGAGCATTAGCGGCG-TTTATAC
11037139 AAAGCGCCACAAAAAA
1 AAAGCGCCACAAAAAA
11037155 CCTAAGACGA
Statistics
Matches: 76, Mismatches: 17, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
39 27 0.36
40 49 0.64
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.17
Consensus pattern (39 bp):
AAAGCGCCACAAAAAATAGAGCATTAGCGGCGTTTATAC
Found at i:11037284 original size:25 final size:25
Alignment explanation
Indices: 11037256--11037326 Score: 68
Period size: 25 Copynumber: 3.2 Consensus size: 25
11037246 TTTTCGTCTA
11037256 AGCGCCGCTAATGCTCCGAGTCTTT
1 AGCGCCGCTAATGCTCCGAGTCTTT
* *
11037281 AGCGGCGCT--T--T-C--GTC-TA
1 AGCGCCGCTAATGCTCCGAGTCTTT
11037298 AGCGCCGCTAATGCTCCGAGTCTTT
1 AGCGCCGCTAATGCTCCGAGTCTTT
11037323 AGCG
1 AGCG
11037327 GCGTTTTCGT
Statistics
Matches: 34, Mismatches: 4, Indels: 16
0.63 0.07 0.30
Matches are distributed among these distances:
17 9 0.26
18 3 0.09
19 1 0.03
20 1 0.03
21 2 0.06
22 1 0.03
23 1 0.03
24 3 0.09
25 13 0.38
ACGTcount: A:0.15, C:0.31, G:0.27, T:0.27
Consensus pattern (25 bp):
AGCGCCGCTAATGCTCCGAGTCTTT
Found at i:11037297 original size:42 final size:42
Alignment explanation
Indices: 11037195--11037416 Score: 349
Period size: 42 Copynumber: 5.3 Consensus size: 42
11037185 TTTTTAAACA
*
11037195 TTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCT-CGGGTC
1 TTTAGCGGCGTTTTCGTCTAAGCGCCGCTAATGCTCCGGGTC
* *
11037236 TATAGCGGCGTTTTCGTCTAAGCGCCGCTAATGCTCCGAGTC
1 TTTAGCGGCGTTTTCGTCTAAGCGCCGCTAATGCTCCGGGTC
* *
11037278 TTTAGCGGCGCTTTCGTCTAAGCGCCGCTAATGCTCCGAGTC
1 TTTAGCGGCGTTTTCGTCTAAGCGCCGCTAATGCTCCGGGTC
11037320 TTTAGCGGCGTTTTCGTCTAAGCGCCGCTAATGCTCCGGGTC
1 TTTAGCGGCGTTTTCGTCTAAGCGCCGCTAATGCTCCGGGTC
* * *
11037362 TATAGCGGCGTTTTCGCCTATGCGCCGCTAATGCT-CGGGTC
1 TTTAGCGGCGTTTTCGTCTAAGCGCCGCTAATGCTCCGGGTC
*
11037403 TTTAGCGGCATTTT
1 TTTAGCGGCGTTTT
11037417 TATATATGCG
Statistics
Matches: 168, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
41 51 0.30
42 117 0.70
ACGTcount: A:0.14, C:0.27, G:0.27, T:0.32
Consensus pattern (42 bp):
TTTAGCGGCGTTTTCGTCTAAGCGCCGCTAATGCTCCGGGTC
Found at i:11037428 original size:125 final size:125
Alignment explanation
Indices: 11037195--11037439 Score: 366
Period size: 125 Copynumber: 2.0 Consensus size: 125
11037185 TTTTTAAACA
* *
11037195 TTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGGGTCTATAGCGGCGTTTTCGTCTAAGCG
1 TTTAGCGGCGTTTTCGTCTAAGCGCCGCTAATGCTCGGGTCTATAGCGGCGTTTTCGCCTAAGCG
* * * *
11037260 CCGCTAATGCTCCGAGTCTTTAGCGGCGCTTTCGTCTAAGCGCCGCTAATGCTCCGAGTC
66 CCGCTAATGCTCCGAGTCTTTAGCGGCACTTTCATATAAGCGCCACTAATGCTCCGAGTC
*
11037320 TTTAGCGGCGTTTTCGTCTAAGCGCCGCTAATGCTCCGGGTCTATAGCGGCGTTTTCGCCTATGC
1 TTTAGCGGCGTTTTCGTCTAAGCGCCGCTAATGCT-CGGGTCTATAGCGGCGTTTTCGCCTAAGC
* * * * *
11037385 GCCGCTAATGCT-CGGGTCTTTAGCGGCATTTTTATATATGCGCCACTAATTCTCC
65 GCCGCTAATGCTCCGAGTCTTTAGCGGCACTTTCATATAAGCGCCACTAATGCTCC
11037440 TGTATTCAGC
Statistics
Matches: 107, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
125 68 0.64
126 39 0.36
ACGTcount: A:0.15, C:0.28, G:0.26, T:0.32
Consensus pattern (125 bp):
TTTAGCGGCGTTTTCGTCTAAGCGCCGCTAATGCTCGGGTCTATAGCGGCGTTTTCGCCTAAGCG
CCGCTAATGCTCCGAGTCTTTAGCGGCACTTTCATATAAGCGCCACTAATGCTCCGAGTC
Found at i:11038341 original size:16 final size:16
Alignment explanation
Indices: 11038320--11038350 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11038310 AGGGTTATGC
*
11038320 TTTAGGGGTTAAGGGA
1 TTTAGGGGTAAAGGGA
11038336 TTTAGGGGTAAAGGG
1 TTTAGGGGTAAAGGG
11038351 TTAGGGGGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.00, G:0.45, T:0.29
Consensus pattern (16 bp):
TTTAGGGGTAAAGGGA
Found at i:11039615 original size:25 final size:22
Alignment explanation
Indices: 11039561--11039617 Score: 60
Period size: 25 Copynumber: 2.4 Consensus size: 22
11039551 CACGATTTCA
*
11039561 TTTCCCCAATTTCCCAACTTCT
1 TTTCCCCAATTTCCCAACTTAT
*
11039583 TTTCCCCCAATTTCCCCCAAGTTAT
1 TTT-CCCCAATTT--CCCAACTTAT
11039608 TCTTCCCCAA
1 T-TTCCCCAA
11039618 AGTATTTTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
22 3 0.10
23 9 0.31
25 15 0.52
26 2 0.07
ACGTcount: A:0.19, C:0.42, G:0.02, T:0.37
Consensus pattern (22 bp):
TTTCCCCAATTTCCCAACTTAT
Found at i:11039629 original size:14 final size:15
Alignment explanation
Indices: 11039593--11039631 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
11039583 TTTCCCCCAA
*
11039593 TTTCCCCCAAGTTAT
1 TTTCCCCAAAGTTAT
11039608 TCTTCCCCAAAG-TAT
1 T-TTCCCCAAAGTTAT
11039623 TTTCCCCAA
1 TTTCCCCAA
11039632 TTTCCCAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 8 0.36
15 5 0.23
16 9 0.41
ACGTcount: A:0.23, C:0.36, G:0.05, T:0.36
Consensus pattern (15 bp):
TTTCCCCAAAGTTAT
Found at i:11039895 original size:33 final size:33
Alignment explanation
Indices: 11039853--11039920 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
11039843 CATCTATGTT
*
11039853 ATTCGAGTTAAATGAGATGAGTGTTGGGTATGA
1 ATTCGAGTTAAATGAGATGAGTGTTAGGTATGA
*
11039886 ATTCGAGTTAAATGAGATTAGTGTTAGGTATGA
1 ATTCGAGTTAAATGAGATGAGTGTTAGGTATGA
11039919 AT
1 AT
11039921 ATATGTATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.32, C:0.03, G:0.29, T:0.35
Consensus pattern (33 bp):
ATTCGAGTTAAATGAGATGAGTGTTAGGTATGA
Found at i:11040183 original size:17 final size:17
Alignment explanation
Indices: 11040161--11040198 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
11040151 ATCCCAGGAA
11040161 CTTGCAGCCTCTACTTC
1 CTTGCAGCCTCTACTTC
*
11040178 CTTGCAGCCTTTACTTC
1 CTTGCAGCCTCTACTTC
11040195 CTTG
1 CTTG
11040199 TGAACTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.11, C:0.37, G:0.13, T:0.39
Consensus pattern (17 bp):
CTTGCAGCCTCTACTTC
Found at i:11040487 original size:60 final size:60
Alignment explanation
Indices: 11040420--11040610 Score: 140
Period size: 60 Copynumber: 3.1 Consensus size: 60
11040410 CAGCTACCGT
*
11040420 CAACCTCACACCCAAAACCCCAGTCAACCCGAACATCATCATAACCAAATCCACTACCAG
1 CAACCTCACACCCAAAACCCAAGTCAACCCGAACATCATCATAACCAAATCCACTACCAG
* *** * * * * * ** *
11040480 CAACCTCAGTAAAAAAAAAACTAAATCAGAGTCC--AGATCA-C-T-ACTTCAGCTTGCAGCTAC
1 CAACCTCA--CACCCAAAACCCAAGTCA-A-CCCGAACATCATCATAAC--CA-AATCCA-CTAC
*
11040540 CAT
58 CAG
*
11040543 CAACCTCACACCCAAAACCCTAGTCAACCCGAACATCATCATAACCAAATCCACTACCAG
1 CAACCTCACACCCAAAACCCAAGTCAACCCGAACATCATCATAACCAAATCCACTACCAG
11040603 CAACCTCA
1 CAACCTCA
11040611 GTAAAAAAAA
Statistics
Matches: 90, Mismatches: 28, Indels: 26
0.62 0.19 0.18
Matches are distributed among these distances:
59 4 0.04
60 24 0.27
61 21 0.23
62 21 0.23
63 16 0.18
64 4 0.04
ACGTcount: A:0.40, C:0.38, G:0.07, T:0.15
Consensus pattern (60 bp):
CAACCTCACACCCAAAACCCAAGTCAACCCGAACATCATCATAACCAAATCCACTACCAG
Found at i:11040572 original size:123 final size:123
Alignment explanation
Indices: 11040376--11040622 Score: 476
Period size: 123 Copynumber: 2.0 Consensus size: 123
11040366 CACACTATTC
*
11040376 ACTAAATCAGAGTCCAGATCACTACTTCAGCTTGCAGCTACCGTCAACCTCACACCCAAAACCCC
1 ACTAAATCAGAGTCCAGATCACTACTTCAGCTTGCAGCTACCATCAACCTCACACCCAAAACCCC
11040441 AGTCAACCCGAACATCATCATAACCAAATCCACTACCAGCAACCTCAGTAAAAAAAAA
66 AGTCAACCCGAACATCATCATAACCAAATCCACTACCAGCAACCTCAGTAAAAAAAAA
*
11040499 ACTAAATCAGAGTCCAGATCACTACTTCAGCTTGCAGCTACCATCAACCTCACACCCAAAACCCT
1 ACTAAATCAGAGTCCAGATCACTACTTCAGCTTGCAGCTACCATCAACCTCACACCCAAAACCCC
11040564 AGTCAACCCGAACATCATCATAACCAAATCCACTACCAGCAACCTCAGTAAAAAAAAA
66 AGTCAACCCGAACATCATCATAACCAAATCCACTACCAGCAACCTCAGTAAAAAAAAA
11040622 A
1 A
11040623 ACACACCAGA
Statistics
Matches: 122, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 122 1.00
ACGTcount: A:0.40, C:0.34, G:0.09, T:0.17
Consensus pattern (123 bp):
ACTAAATCAGAGTCCAGATCACTACTTCAGCTTGCAGCTACCATCAACCTCACACCCAAAACCCC
AGTCAACCCGAACATCATCATAACCAAATCCACTACCAGCAACCTCAGTAAAAAAAAA
Found at i:11041425 original size:24 final size:24
Alignment explanation
Indices: 11041398--11041450 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
11041388 TATTTGTATA
11041398 ATATTTGTAACTAAAATTAATATT
1 ATATTTGTAACTAAAATTAATATT
*
11041422 ATATTTGTATCTAAAATTAATATT
1 ATATTTGTAACTAAAATTAATATT
11041446 ATATT
1 ATATT
11041451 ATAAAATACT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (24 bp):
ATATTTGTAACTAAAATTAATATT
Found at i:11041602 original size:22 final size:22
Alignment explanation
Indices: 11041557--11041602 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
11041547 AACTTAATTA
*
11041557 ATTAATATTATACATAACTTAC
1 ATTAATATTATACATAACTGAC
11041579 ATTAATATTATACATAGA-TGAC
1 ATTAATATTATACATA-ACTGAC
11041601 AT
1 AT
11041603 AACTTAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.04, T:0.39
Consensus pattern (22 bp):
ATTAATATTATACATAACTGAC
Found at i:11041605 original size:56 final size:56
Alignment explanation
Indices: 11041542--11041692 Score: 293
Period size: 56 Copynumber: 2.7 Consensus size: 56
11041532 TATTGTAAGG
*
11041542 GACATAACTTAATTAATTAATATTATACATAACTTACATTAATATTATACATAGAT
1 GACATAACTTAATTAATTAATATTATACATAACTTACATTAATATTATACATAAAT
11041598 GACATAACTTAATTAATTAATATTATACATAACTTACATTAATATTATACATAAAT
1 GACATAACTTAATTAATTAATATTATACATAACTTACATTAATATTATACATAAAT
11041654 GACATAACTTAATTAATTAATATTATACATAACTTACAT
1 GACATAACTTAATTAATTAATATTATACATAACTTACAT
11041693 AAATTAATTA
Statistics
Matches: 94, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 94 1.00
ACGTcount: A:0.47, C:0.11, G:0.03, T:0.39
Consensus pattern (56 bp):
GACATAACTTAATTAATTAATATTATACATAACTTACATTAATATTATACATAAAT
Found at i:11041658 original size:22 final size:22
Alignment explanation
Indices: 11041613--11041658 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
11041603 AACTTAATTA
* *
11041613 ATTAATATTATACATAACTTAC
1 ATTAATATTATACATAAATGAC
11041635 ATTAATATTATACATAAATGAC
1 ATTAATATTATACATAAATGAC
11041657 AT
1 AT
11041659 AACTTAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.48, C:0.11, G:0.02, T:0.39
Consensus pattern (22 bp):
ATTAATATTATACATAAATGAC
Found at i:11041678 original size:34 final size:34
Alignment explanation
Indices: 11041635--11041781 Score: 180
Period size: 34 Copynumber: 4.5 Consensus size: 34
11041625 CATAACTTAC
11041635 ATTAATATTATACATAAATGACATAACTTAATTA
1 ATTAATATTATACATAAATGACATAACTTAATTA
* * *
11041669 ATTAATATTATACATAACTTACATAAATTAATTA
1 ATTAATATTATACATAAATGACATAACTTAATTA
* * *
11041703 GTT-A-A-TATACATAAATTACATAACTT-A--C
1 ATTAATATTATACATAAATGACATAACTTAATTA
* *
11041731 ATTAATATGATACATAAATGACATAACTTAGTTA
1 ATTAATATTATACATAAATGACATAACTTAATTA
11041765 ATTAATATTATACATAA
1 ATTAATATTATACATAA
11041782 CTTACAACTT
Statistics
Matches: 94, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
28 2 0.02
29 1 0.01
30 2 0.02
31 38 0.40
32 1 0.01
33 1 0.01
34 49 0.52
ACGTcount: A:0.49, C:0.10, G:0.03, T:0.38
Consensus pattern (34 bp):
ATTAATATTATACATAAATGACATAACTTAATTA
Found at i:11041693 original size:9 final size:9
Alignment explanation
Indices: 11041679--11041907 Score: 60
Period size: 9 Copynumber: 26.7 Consensus size: 9
11041669 ATTAATATTA
11041679 TACATAACT
1 TACATAACT
*
11041688 TACATAAAT
1 TACATAACT
* *
11041697 TA-ATTAGT
1 TACATAACT
11041705 TA-AT-A-T
1 TACATAACT
*
11041711 -ACATAAAT
1 TACATAACT
11041719 TACATAACT
1 TACATAACT
*
11041728 TACATTAATAT
1 TACA-TAA-CT
*
11041739 GATACATAAAT
1 --TACATAACT
*
11041750 GACATAACT
1 TACATAACT
**
11041759 TAGTTAA-T
1 TACATAACT
*
11041767 TA-AT-ATT
1 TACATAACT
11041774 ATACATAACT
1 -TACATAACT
11041784 TAC--AACT
1 TACATAACT
11041791 TACATAACT
1 TACATAACT
**
11041800 TACATATTTT
1 TACATA-ACT
*
11041810 TA-ATTA-T
1 TACATAACT
* *
11041817 T-CGTAAAT
1 TACATAACT
11041825 TACATAACT
1 TACATAACT
* *
11041834 TACTTAATT
1 TACATAACT
*
11041843 TTCATAA--
1 TACATAACT
*
11041850 TAAATAACT
1 TACATAACT
*
11041859 TACATAAAT
1 TACATAACT
* *
11041868 AAC-T-TCT
1 TACATAACT
11041875 TACATAACT
1 TACATAACT
** *
11041884 TATGTGACT
1 TACATAACT
11041893 TACATAACT
1 TACATAACT
11041902 TACATA
1 TACATA
11041908 GCATAATTTT
Statistics
Matches: 159, Mismatches: 39, Indels: 44
0.66 0.16 0.18
Matches are distributed among these distances:
5 1 0.01
6 4 0.03
7 23 0.14
8 18 0.11
9 95 0.60
10 8 0.05
11 3 0.02
12 3 0.02
13 4 0.03
ACGTcount: A:0.44, C:0.14, G:0.03, T:0.39
Consensus pattern (9 bp):
TACATAACT
Found at i:11041715 original size:56 final size:54
Alignment explanation
Indices: 11041542--11041716 Score: 230
Period size: 56 Copynumber: 3.1 Consensus size: 54
11041532 TATTGTAAGG
*
11041542 GACATAACTTAATTAATTAATATTATACATAACTTACATTAA-TATTATACATAGAT
1 GACATAACTTAATTAATTAATATTATACATAACTTACATAAATTATTATA-AT--AT
*
11041598 GACATAACTTAATTAATTAATATTATACATAACTTACATTAA-TATTATACATAAAT
1 GACATAACTTAATTAATTAATATTATACATAACTTACATAAATTATTATA-AT--AT
11041654 GACATAACTTAATTAATTAATATTATACATAACTTACATAAATTAATTAGTTAATAT
1 GACATAACTTAATTAATTAATATTATACATAACTTACATAAATT-ATTA--TAATAT
11041711 -ACATAA
1 GACATAA
11041717 ATTACATAAC
Statistics
Matches: 113, Mismatches: 2, Indels: 8
0.92 0.02 0.07
Matches are distributed among these distances:
56 102 0.90
57 3 0.03
58 4 0.04
59 2 0.02
60 2 0.02
ACGTcount: A:0.48, C:0.10, G:0.03, T:0.39
Consensus pattern (54 bp):
GACATAACTTAATTAATTAATATTATACATAACTTACATAAATTATTATAATAT
Found at i:11041755 original size:96 final size:90
Alignment explanation
Indices: 11041579--11041787 Score: 303
Period size: 96 Copynumber: 2.3 Consensus size: 90
11041569 CATAACTTAC
* *
11041579 ATTAATATTATACATAGA-TGACATAACTTAATTAATTAATATTATACATAACTTACATTAATAT
1 ATTAATATTATACATA-ACTTACATAAATTAATTAATTAATATTATACATAACTTACATTAATAT
*
11041643 TATACATAAATGACATAACTTAATTA
65 GATACATAAATGACATAACTTAATTA
*
11041669 ATTAATATTATACATAACTTACATAAATTAATTAGTTAATATACATAAATTACATAACTTACATT
1 ATTAATATTATACATAACTTACATAAATTAATTAATTAATAT---T--A-TACATAACTTACATT
*
11041734 AATATGATACATAAATGACATAACTTAGTTA
60 AATATGATACATAAATGACATAACTTAATTA
11041765 ATTAATATTATACATAACTTACA
1 ATTAATATTATACATAACTTACA
11041788 ACTTACATAA
Statistics
Matches: 107, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
89 1 0.01
90 37 0.35
93 1 0.01
95 1 0.01
96 67 0.63
ACGTcount: A:0.48, C:0.11, G:0.03, T:0.38
Consensus pattern (90 bp):
ATTAATATTATACATAACTTACATAAATTAATTAATTAATATTATACATAACTTACATTAATATG
ATACATAAATGACATAACTTAATTA
Found at i:11041862 original size:34 final size:34
Alignment explanation
Indices: 11041787--11041865 Score: 86
Period size: 34 Copynumber: 2.3 Consensus size: 34
11041777 CATAACTTAC
* * ***
11041787 AACTTACATAACTTACATATTTTTAATTATTCGT
1 AACTTACATAACTTACATAATTTTAATAATAAAT
* * *
11041821 AAATTACATAACTTACTTAATTTTCATAATAAAT
1 AACTTACATAACTTACATAATTTTAATAATAAAT
11041855 AACTTACATAA
1 AACTTACATAA
11041866 ATAACTTCTT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.43, C:0.14, G:0.01, T:0.42
Consensus pattern (34 bp):
AACTTACATAACTTACATAATTTTAATAATAAAT
Found at i:11041938 original size:25 final size:25
Alignment explanation
Indices: 11041909--11041964 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
11041899 ACTTACATAG
* *
11041909 CATAATTTTCATAATACACAACTTA
1 CATAATTTGCATAATAAACAACTTA
** *
11041934 CATAATTTGGGTAATAAATAACTTA
1 CATAATTTGCATAATAAACAACTTA
11041959 CATAAT
1 CATAAT
11041965 ACATAACTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.45, C:0.14, G:0.05, T:0.36
Consensus pattern (25 bp):
CATAATTTGCATAATAAACAACTTA
Found at i:11041964 original size:16 final size:16
Alignment explanation
Indices: 11041945--11041978 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
11041935 ATAATTTGGG
11041945 TAATAAATAACTTACA
1 TAATAAATAACTTACA
*
11041961 TAATACATAACTTACA
1 TAATAAATAACTTACA
11041977 TA
1 TA
11041979 GCTTAACTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.53, C:0.15, G:0.00, T:0.32
Consensus pattern (16 bp):
TAATAAATAACTTACA
Found at i:11052493 original size:66 final size:66
Alignment explanation
Indices: 11052344--11052474 Score: 183
Period size: 66 Copynumber: 2.0 Consensus size: 66
11052334 AGCAAATTAC
* * * * * *
11052344 ACAACTTAAAGCGGAGGCAACATCGAGAGAAGCTGATGTTCAAAAAAGATATGAAGAACTCCAGC
1 ACAACTTAAAACAGATGCAGCAGCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGC
11052409 T
66 T
*
11052410 ACAACTTAAAACAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACGAAA-ATATGAAGAACTCCAG
1 ACAACTTAAAACAGATGCAGCAGCGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCCAG
11052474 C
65 C
11052475 AGCAGCTTAG
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
66 54 0.95
67 3 0.05
ACGTcount: A:0.43, C:0.19, G:0.23, T:0.15
Consensus pattern (66 bp):
ACAACTTAAAACAGATGCAGCAGCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGC
T
Found at i:11052505 original size:66 final size:66
Alignment explanation
Indices: 11052369--11052513 Score: 170
Period size: 66 Copynumber: 2.2 Consensus size: 66
11052359 GGCAACATCG
*
11052369 AGAGAAGCTGATGTTCAAAAAAGATATGAAGAACTCCAGCTACAACTTAAAACAGATGCAGCAGC
1 AGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGCTACAACTTAAAACAGATGCAGCAGC
*
11052434 G
66 A
* * * *
11052435 AGAGAAGCTGAGGTTCAACGAAA-ATATGAAGAACTCCAGC-AGCAGCTTAGAGCAGATGC-GAC
1 AGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCCAGCTA-CAACTTAAAACAGATGCAG-C
*
11052497 AGTA
63 AGCA
*
11052501 AGAGAAGCAGAGG
1 AGAGAAGCTGAGG
11052514 CGGCAGCGAG
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
65 2 0.03
66 63 0.93
67 3 0.04
ACGTcount: A:0.42, C:0.17, G:0.26, T:0.14
Consensus pattern (66 bp):
AGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGCTACAACTTAAAACAGATGCAGCAGC
A
Found at i:11052525 original size:21 final size:21
Alignment explanation
Indices: 11052504--11052596 Score: 123
Period size: 21 Copynumber: 4.4 Consensus size: 21
11052494 GACAGTAAGA
* *
11052504 GAAGCAGAGGCGGCAGCGAGA
1 GAAGCAGAGGCTGCAGCGAGG
* * *
11052525 GAAGAACAGGCTGCAGCAAGG
1 GAAGCAGAGGCTGCAGCGAGG
**
11052546 GAAGCAGAGGCTAAAGCGAGG
1 GAAGCAGAGGCTGCAGCGAGG
11052567 GAAGCAGAGGCTGCAGCGAGG
1 GAAGCAGAGGCTGCAGCGAGG
11052588 GAAGCAGAG
1 GAAGCAGAG
11052597 CAGCGTCAAA
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 60 1.00
ACGTcount: A:0.35, C:0.17, G:0.44, T:0.03
Consensus pattern (21 bp):
GAAGCAGAGGCTGCAGCGAGG
Found at i:11052950 original size:43 final size:42
Alignment explanation
Indices: 11052902--11053107 Score: 195
Period size: 43 Copynumber: 4.7 Consensus size: 42
11052892 ATCTGCCAAA
* *
11052902 TTTAGCGGCGTTTTTGGTAAAAGCGCTGCTATAGATTAGGGTC
1 TTTAGCGGCGTTTTTGG-AAAAGCGCCGCTATAGATCAGGGTC
** * *
11052945 TTTAGCGGCGTTTTTGCGCGAAGCGCCACTATATAGA-CAAAGGGTA
1 TTTAGCGGCGTTTTTG-GAAAAGCGCCGC--TATAGATC--AGGGTC
*
11052991 TTTAGCGGCGTTTTCTGGATAAGCGCCGCTATAGATCAGGGTC
1 TTTAGCGGCGTTTT-TGGAAAAGCGCCGCTATAGATCAGGGTC
* *
11053034 TATT-GCGGCGTTTGTGGGGAAAA-TGCCGCTATAGATCAGGGTC
1 T-TTAGCGGCGTTT-T-TGGAAAAGCGCCGCTATAGATCAGGGTC
11053077 TATT-GCGGCGTTTTTGGGAAAAGCGCCGCTA
1 T-TTAGCGGCGTTTTT-GGAAAAGCGCCGCTA
11053108 AAGACCATGA
Statistics
Matches: 136, Mismatches: 16, Indels: 22
0.78 0.09 0.13
Matches are distributed among these distances:
42 7 0.05
43 77 0.57
44 15 0.11
45 7 0.05
46 28 0.21
47 2 0.01
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.30
Consensus pattern (42 bp):
TTTAGCGGCGTTTTTGGAAAAGCGCCGCTATAGATCAGGGTC
Found at i:11053066 original size:89 final size:89
Alignment explanation
Indices: 11052901--11053107 Score: 223
Period size: 89 Copynumber: 2.4 Consensus size: 89
11052891 AATCTGCCAA
* * *
11052901 ATTTAGCGGCGTTTTTGGTAAAAGCGCTGCTATAGATTAGGGTCTTTAGCGGCGTTTTTGCGCGA
1 ATTTAGCGGCGTTTTTGGTAAAAGCGCCGCTATAGATCAGGGTCTTTAGCGGCGTTTGTGCGCGA
*
11052966 AGCGCCACTATATAGACAAAGGGT
66 AACGCCACTATATAGACAAAGGGT
* *
11052990 ATTTAGCGGCGTTTTCTGG-ATAAGCGCCGCTATAGATCAGGGTCTATT-GCGGCGTTTGTG-GG
1 ATTTAGCGGCGTTTT-TGGTAAAAGCGCCGCTATAGATCAGGGTCT-TTAGCGGCGTTTGTGCGC
* *
11053052 GAAAATGCCGC--TATAGATC--AGGGT
64 G-AAACGCCACTATATAGA-CAAAGGGT
* *
11053076 CTATT-GCGGCGTTTTTGGGAAAAGCGCCGCTA
1 AT-TTAGCGGCGTTTTTGGTAAAAGCGCCGCTA
11053108 AAGACCATGA
Statistics
Matches: 102, Mismatches: 10, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
85 3 0.03
86 28 0.27
87 8 0.08
88 3 0.03
89 55 0.54
90 5 0.05
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (89 bp):
ATTTAGCGGCGTTTTTGGTAAAAGCGCCGCTATAGATCAGGGTCTTTAGCGGCGTTTGTGCGCGA
AACGCCACTATATAGACAAAGGGT
Found at i:11053122 original size:43 final size:42
Alignment explanation
Indices: 11052904--11053171 Score: 151
Period size: 43 Copynumber: 6.1 Consensus size: 42
11052894 CTGCCAAATT
* * ** * *
11052904 TAGCGGCGTTTTTGGTAAAAGCGCTGCTATAGATTAGGGTCTT
1 TAGCGGCGTTTTTGG-AAAAGCGCCGCTAAAGACCAGGATCTA
** * * * * *
11052947 TAGCGGCGTTTTTGCGCGAAGCGCCACTATATAGACAAAGGGTATT
1 TAGCGGCGTTTTTG-GAAAAGCGCCGCTA-A-AGAC-CAGGATCTA
* * * *
11052993 TAGCGGCGTTTTCTGGATAAGCGCCGCTATAGATCAGGGTCTA
1 TAGCGGCGTTTT-TGGAAAAGCGCCGCTAAAGACCAGGATCTA
* * * * * *
11053036 TTGCGGCGTTTGTGGGGAAAA-TGCCGCTATAGATCAGGGTCTA
1 TAGCGGCGTTT-T-TGGAAAAGCGCCGCTAAAGACCAGGATCTA
* *
11053079 TTGCGGCGTTTTTGGGAAAAGCGCCGCTAAAGACCATGATCTA
1 TAGCGGCGTTTTT-GGAAAAGCGCCGCTAAAGACCAGGATCTA
* ** * **
11053122 TAGCGGCGCTTATATAAAAAAACGCCGCTAAAGACCCTGATCTA
1 TAGCGGCG-TT-TTTGGAAAAGCGCCGCTAAAGACCAGGATCTA
11053166 TAGCGG
1 TAGCGG
11053172 TGCTTTCAAC
Statistics
Matches: 182, Mismatches: 33, Indels: 19
0.78 0.14 0.08
Matches are distributed among these distances:
42 7 0.04
43 95 0.52
44 43 0.24
45 5 0.03
46 30 0.16
47 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (42 bp):
TAGCGGCGTTTTTGGAAAAGCGCCGCTAAAGACCAGGATCTA
Found at i:11053154 original size:44 final size:44
Alignment explanation
Indices: 11053095--11053240 Score: 167
Period size: 43 Copynumber: 3.4 Consensus size: 44
11053085 CGTTTTTGGG
*
11053095 AAAAGCGCCGCTAAAGACCATGATCTATAGCGGCGCTTATATAA
1 AAAAACGCCGCTAAAGACCATGATCTATAGCGGCGCTTATATAA
* * *
11053139 AAAAACGCCGCTAAAGACCCTGATCTATAGCGGTGCTT-TCA-AC
1 AAAAACGCCGCTAAAGACCATGATCTATAGCGGCGCTTAT-ATAA
* *
11053182 AAAAACGCCGCTAAAGACACCA--ATCTATAGCGGCGGTTATAT-T
1 AAAAACGCCGCTAAAG--ACCATGATCTATAGCGGCGCTTATATAA
*
11053225 AAAAATGCCGCTAAAG
1 AAAAACGCCGCTAAAG
11053241 CTCTTAGTCT
Statistics
Matches: 88, Mismatches: 9, Indels: 11
0.81 0.08 0.10
Matches are distributed among these distances:
43 48 0.55
44 37 0.42
45 3 0.03
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (44 bp):
AAAAACGCCGCTAAAGACCATGATCTATAGCGGCGCTTATATAA
Found at i:11054024 original size:27 final size:28
Alignment explanation
Indices: 11053981--11054035 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
11053971 AAATAAATAC
*
11053981 TAATAGTTTTATTTAAAC-ATAATTAAA
1 TAATAGTTTCATTTAAACAATAATTAAA
*
11054008 TAATAG-TTCATTATAAACAATTATTAAA
1 TAATAGTTTCATT-TAAACAATAATTAAA
11054036 ACCCTATACC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 5 0.21
27 11 0.46
28 8 0.33
ACGTcount: A:0.49, C:0.05, G:0.04, T:0.42
Consensus pattern (28 bp):
TAATAGTTTCATTTAAACAATAATTAAA
Found at i:11055826 original size:23 final size:22
Alignment explanation
Indices: 11055798--11055840 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
11055788 AAATTAAATC
11055798 TCTAAGATTACAAAATCATATAT
1 TCTAAGATTAC-AAATCATATAT
*
11055821 TCTAAGATTACATATCATAT
1 TCTAAGATTACAAATCATAT
11055841 TCAAGATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.37
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATAT
Found at i:11055848 original size:19 final size:20
Alignment explanation
Indices: 11055798--11055933 Score: 93
Period size: 19 Copynumber: 6.8 Consensus size: 20
11055788 AAATTAAATC
*
11055798 TCTAAGATTACAAAATCATATAT
1 TCTAAGATTAC-ATATC--ATAT
11055821 TCTAAGATTACATATCATAT
1 TCTAAGATTACATATCATAT
* *
11055841 TC-AAGATTATATATCAT-C
1 TCTAAGATTACATATCATAT
*
11055859 TCTAAGATTGCATATCATA-
1 TCTAAGATTACATATCATAT
* *
11055878 TATAAGATTGCATAT-ATCAT
1 TCTAAGATTACATATCAT-AT
** * *
11055898 ATCTTGGACTGCATATCATA-
1 -TCTAAGATTACATATCATAT
*
11055918 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
11055934 CTCAAAAATT
Statistics
Matches: 94, Mismatches: 13, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
18 4 0.04
19 55 0.59
20 6 0.06
21 12 0.13
22 6 0.06
23 11 0.12
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (20 bp):
TCTAAGATTACATATCATAT
Found at i:11055911 original size:40 final size:39
Alignment explanation
Indices: 11055821--11055932 Score: 129
Period size: 40 Copynumber: 2.8 Consensus size: 39
11055811 AATCATATAT
* * *
11055821 TCTAAGATTACATATCATATTCAAGATT--ATATATCATC
1 TCTAAGACTGCATATCATATT-AAGATTGCATATATCATA
*
11055859 TCTAAGATTGCATATCATATATAAGATTGCATATATCATA
1 TCTAAGACTGCATATCATAT-TAAGATTGCATATATCATA
**
11055899 TCTTGGACTGCATATCATATCTAAGATTGCATAT
1 TCTAAGACTGCATATCATAT-TAAGATTGCATAT
11055933 CCTCAAAAAT
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
38 25 0.38
39 1 0.02
40 39 0.60
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (39 bp):
TCTAAGACTGCATATCATATTAAGATTGCATATATCATA
Found at i:11056199 original size:45 final size:44
Alignment explanation
Indices: 11056147--11056343 Score: 171
Period size: 44 Copynumber: 4.5 Consensus size: 44
11056137 CTTCAATCTA
11056147 CTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT-CTTCAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTG-CATCCTT-AGTCTG
*
11056192 C-CTCACTGCAACTTCA-GGAGGATAAGACTTGCTTCCTTAGTCTG
1 CTC-CACTGCAACTTCAGGGA-GATAAGACTTGCATCCTTAGTCTG
* * * *
11056236 CTCCACTGCAACTTCAGGGAGATAAGACTAG-ATGC-GA-TCTT
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGCATCCTTAGTCTG
* * * *
11056277 CT-CTCTGCAACTTCAGAGG-GATAAGATCTGTG-AT-TTTAATCCG
1 CTCCACTGCAACTTCAG-GGAGATAAGA-CT-TGCATCCTTAGTCTG
*
11056320 CTCCACTGTAACTTCAGGGAGATA
1 CTCCACTGCAACTTCAGGGAGATA
11056344 GGATTGTCGA
Statistics
Matches: 126, Mismatches: 14, Indels: 25
0.76 0.08 0.15
Matches are distributed among these distances:
40 20 0.16
41 9 0.07
42 5 0.04
43 8 0.06
44 52 0.41
45 32 0.25
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTTGCATCCTTAGTCTG
Found at i:11056249 original size:44 final size:45
Alignment explanation
Indices: 11056137--11056264 Score: 174
Period size: 45 Copynumber: 2.9 Consensus size: 45
11056127 GGAATTAGTG
* *
11056137 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
*
11056182 CTTCAGTCTGC-CTCACTGCAACTTCA-GGAGGATAAGACTTG-CTT
1 CTTCAGTCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCCAT
11056226 CCTT-AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACT
1 -CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACT
11056265 AGATGCGATC
Statistics
Matches: 75, Mismatches: 3, Indels: 11
0.84 0.03 0.12
Matches are distributed among these distances:
44 35 0.47
45 40 0.53
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (45 bp):
CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
Found at i:11056327 original size:84 final size:86
Alignment explanation
Indices: 11056147--11056343 Score: 217
Period size: 84 Copynumber: 2.3 Consensus size: 86
11056137 CTTCAATCTA
*
11056147 CTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGACTAG-CATC-TCAGTCTGCCTCACTGCAACTTCAGGAG
* * *
11056212 GATAAGACTTGCTTCCTTAGTCTG
64 GATAAGACTTGATT-CTTAATCCG
* * *
11056236 CTCCACTGCAACTTCAGGGAGATAAGACTAG-AT-GC-GATCT-TCTCTCTGCAACTTCA-GAGG
1 CTCCACTGCAACTTCAGGGAGATAAGACTAGCATCTCAG-TCTGCCTCACTGCAACTTCAGGA-G
11056296 GATAAGATCTGTGATT-TTAATCCG
64 GATAAGA-CT-TGATTCTTAATCCG
*
11056320 CTCCACTGTAACTTCAGGGAGATA
1 CTCCACTGCAACTTCAGGGAGATA
11056344 GGATTGTCGA
Statistics
Matches: 96, Mismatches: 8, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
83 2 0.02
84 52 0.54
85 6 0.06
86 4 0.04
87 2 0.02
89 30 0.31
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (86 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTAGCATCTCAGTCTGCCTCACTGCAACTTCAGGAGGA
TAAGACTTGATTCTTAATCCG
Found at i:11056672 original size:132 final size:132
Alignment explanation
Indices: 11056358--11056973 Score: 982
Period size: 132 Copynumber: 4.7 Consensus size: 132
11056348 TGTCGATTTT
* * * * *
11056358 AATCTACTTCCAACTATCTTGGAAAGATATGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
* * * *
11056423 GGGAGATAAGATCTACAATCTTCAACCTACTCCGTTGCTGCTCA-GGAAACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
11056487 TA
131 TA
* * * *
11056489 AATCTGCTTCCCACTATCTTGGAAAAATAAGATTTGTCGTCTTCGATCTGCTCTACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
*
11056554 GGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGATGCTCAGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
11056619 TA
131 TA
* * *
11056621 AATCTGCTTTCCACTATCTTGGAAATATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
*
11056686 GGGAGATAAGATATACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
11056751 TA
131 TA
* * *
11056753 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCTGTCTTCGATCTACTCCACTACTACTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
* *
11056818 GGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGATAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
11056883 TA
131 TA
* *
11056885 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGTTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
* *
11056950 AGGATATAAGATCTACAATTTTCA
66 GGGAGATAAGATCTACAATTTTCA
11056974 CTGATCTGTT
Statistics
Matches: 449, Mismatches: 35, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
131 100 0.22
132 349 0.78
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (132 bp):
AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
GGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
TA
Found at i:11058136 original size:20 final size:20
Alignment explanation
Indices: 11058108--11058150 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
11058098 TGGCCTCTCC
*
11058108 TTTTACTTTTACTTTTTCTT
1 TTTTACTTTTACCTTTTCTT
* *
11058128 TTTTCCTTTTTCCTTTTCTT
1 TTTTACTTTTACCTTTTCTT
11058148 TTT
1 TTT
11058151 CCTCTTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTTACTTTTACCTTTTCTT
Found at i:11058143 original size:21 final size:21
Alignment explanation
Indices: 11058114--11058159 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
11058104 CTCCTTTTAC
*
11058114 TTTTACTTTTTCTTTTTTC-CT
1 TTTTAC-TTTTCTTTTTCCTCT
*
11058135 TTTTCCTTTTCTTTTTCCTCT
1 TTTTACTTTTCTTTTTCCTCT
11058156 TTTT
1 TTTT
11058160 TTTTGAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTTACTTTTCTTTTTCCTCT
Found at i:11058157 original size:14 final size:14
Alignment explanation
Indices: 11058113--11058158 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
11058103 TCTCCTTTTA
11058113 CTTTTACTTTTTCT
1 CTTTTACTTTTTCT
* *
11058127 TTTTTCCTTTTTC-
1 CTTTTACTTTTTCT
11058140 CTTTT-CTTTTTCCT
1 CTTTTACTTTTT-CT
11058154 CTTTT
1 CTTTT
11058159 TTTTTGAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 6 0.22
13 5 0.19
14 16 0.59
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.74
Consensus pattern (14 bp):
CTTTTACTTTTTCT
Found at i:11059249 original size:82 final size:82
Alignment explanation
Indices: 11059109--11059272 Score: 310
Period size: 82 Copynumber: 2.0 Consensus size: 82
11059099 GAATGAAAAA
* *
11059109 ATATTGGCTCAAATGCAAAGATGTATGTTATTAGAATAATGATGTTCAGACATGAGCCTATTTCA
1 ATATTGGCTCAAATACAAAGATGTATGTTATTAGAATAATGATGTTCAGACATAAGCCTATTTCA
11059174 CAAAGGAATTCCTATCG
66 CAAAGGAATTCCTATCG
11059191 ATATTGGCTCAAATACAAAGATGTATGTTATTAGAATAATGATGTTCAGACATAAGCCTATTTCA
1 ATATTGGCTCAAATACAAAGATGTATGTTATTAGAATAATGATGTTCAGACATAAGCCTATTTCA
11059256 CAAAGGAATTCCTATCG
66 CAAAGGAATTCCTATCG
11059273 TTTTTAGGCT
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 80 1.00
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.32
Consensus pattern (82 bp):
ATATTGGCTCAAATACAAAGATGTATGTTATTAGAATAATGATGTTCAGACATAAGCCTATTTCA
CAAAGGAATTCCTATCG
Found at i:11061948 original size:31 final size:31
Alignment explanation
Indices: 11061910--11061968 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
11061900 TCTTTTTTAA
*
11061910 AAAAAATTTCCCCAGTGGAGTCGCCAAGCTG
1 AAAAAATTTCCCCAGCGGAGTCGCCAAGCTG
11061941 AAAAAATTTCCCCAGCGGAGTCGCCAAG
1 AAAAAATTTCCCCAGCGGAGTCGCCAAG
11061969 TTGTCGAAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.34, C:0.27, G:0.22, T:0.17
Consensus pattern (31 bp):
AAAAAATTTCCCCAGCGGAGTCGCCAAGCTG
Found at i:11062535 original size:98 final size:98
Alignment explanation
Indices: 11062361--11062557 Score: 358
Period size: 98 Copynumber: 2.0 Consensus size: 98
11062351 GTACAATAAA
*
11062361 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
11062426 CCTCTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
*
11062459 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
11062524 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
11062557 A
1 A
11062558 TTATTTTTAA
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 95 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.27
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:11063320 original size:19 final size:19
Alignment explanation
Indices: 11063293--11063443 Score: 185
Period size: 19 Copynumber: 7.8 Consensus size: 19
11063283 AATCATATAT
11063293 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
* ** *
11063312 TCCAAGATTATATATCATC
1 TCTAAGATTGCATATCATA
11063331 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
* ** *
11063350 TCCAAGATTATATATCATC
1 TCTAAGATTGCATATCATA
11063369 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
11063388 TATAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
**
11063409 TCTTGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
11063428 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
11063444 CTCAAAAATT
Statistics
Matches: 108, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
19 92 0.85
21 16 0.15
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:11063442 original size:40 final size:38
Alignment explanation
Indices: 11063293--11063436 Score: 216
Period size: 38 Copynumber: 3.7 Consensus size: 38
11063283 AATCATATAT
11063293 TCTAAGATTGCATATCATATCCAAGATTATATATCATC
1 TCTAAGATTGCATATCATATCCAAGATTATATATCATC
11063331 TCTAAGATTGCATATCATATCCAAGATTATATATCATC
1 TCTAAGATTGCATATCATATCCAAGATTATATATCATC
** *
11063369 TCTAAGATTGCATATCATATATAAGATTGCATATATCATA
1 TCTAAGATTGCATATCATATCCAAGATT--ATATATCATC
** *
11063409 TCTTGGATTGCATATCATATCTAAGATT
1 TCTAAGATTGCATATCATATCCAAGATT
11063437 GCATATCCTC
Statistics
Matches: 98, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
38 64 0.65
40 34 0.35
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (38 bp):
TCTAAGATTGCATATCATATCCAAGATTATATATCATC
Found at i:11063609 original size:19 final size:19
Alignment explanation
Indices: 11063571--11063606 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
11063561 ACTGGTCCAA
*
11063571 TTAAAACATTATTAAAAAT
1 TTAAAAAATTATTAAAAAT
11063590 TTAAAAAATT-TTAAAAA
1 TTAAAAAATTATTAAAAA
11063607 ATTCCAATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (19 bp):
TTAAAAAATTATTAAAAAT
Found at i:11075188 original size:23 final size:23
Alignment explanation
Indices: 11075146--11075189 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
11075136 TTTTTATATC
*
11075146 ATATTAAACATCAAATTAATTAT
1 ATATTAAACATAAAATTAATTAT
11075169 ATATTAAACA-AAAATATAATT
1 ATATTAAACATAAAAT-TAATT
11075190 CAATTCAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (23 bp):
ATATTAAACATAAAATTAATTAT
Done.