genome.fa.s11.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  43  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13146991--13147840	425	2.0	425	96	0	1583	28	19	13	38	1.90
13148607--13148643	18	2.1	18	94	0	65	48	8	10	32	1.67
13151177--13151263	42	2.1	42	80	8	97	18	27	24	29	1.98
13153849--13153942	43	2.2	43	82	0	107	31	15	26	25	1.96
13154728--13154803	38	2.0	38	86	0	107	25	10	15	48	1.77
13154720--13154823	38	2.9	34	77	13	102	25	11	18	45	1.83
13154834--13154972	69	2.0	69	88	0	206	27	15	15	41	1.87
13154834--13154989	69	2.3	69	86	0	186	27	16	14	41	1.87
13163702--13164252	290	1.9	290	94	0	978	24	13	16	46	1.82
13177820--13177860	21	1.9	22	85	5	57	58	2	4	34	1.32
13181322--13181469	59	2.5	59	98	0	287	41	9	27	21	1.84
13185941--13185965	6	4.2	6	100	0	50	16	0	84	0	0.63
13186688--13186729	20	2.2	20	86	4	59	9	11	16	61	1.55
13189069--13189258	50	3.7	50	81	4	209	25	28	20	25	1.99
13199003--13199033	16	1.9	16	93	0	53	74	9	3	12	1.19
13199118--13199196	32	2.5	31	79	4	86	49	8	3	37	1.52
13203494--13203519	5	5.2	5	100	0	52	0	57	0	42	0.98
13203837--13203927	22	4.1	22	87	5	139	30	29	0	39	1.57
13203899--13203957	30	2.0	30	93	0	100	30	35	0	33	1.58
13203877--13203979	52	2.0	51	85	9	138	32	33	0	34	1.58
13203929--13203970	22	1.9	22	90	0	66	33	33	0	33	1.58
13204014--13204067	28	1.9	28	92	7	92	38	0	1	59	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13204016--13204075	28	2.1	28	87	6	86	40	0	1	58	1.08
13204159--13204221	24	2.7	23	75	18	58	28	0	4	66	1.12
13206000--13206062	29	2.2	28	82	5	72	42	15	12	28	1.84
13210234--13210282	26	1.9	25	91	4	80	32	8	12	46	1.71
13213390--13213438	22	2.3	21	89	6	80	38	10	28	22	1.87
13220373--13220424	16	3.2	16	71	15	52	38	3	9	48	1.54
13225238--13225288	18	2.8	18	84	0	66	37	29	5	27	1.80
13230340--13230377	20	1.9	20	89	10	60	63	0	0	36	0.95
13230340--13230382	20	2.3	19	84	15	54	65	0	0	34	0.93
13236484--13236541	29	2.0	29	83	6	73	46	8	10	34	1.69
13239723--13239764	21	2.0	22	90	4	68	11	4	0	83	0.79
13240649--13240678	16	1.9	15	93	6	51	43	6	0	50	1.28
13248182--13248211	3	10.0	3	100	0	60	66	0	33	0	0.92
13251962--13252001	21	1.9	21	84	0	53	50	12	5	32	1.62
13252516--13252544	11	2.7	11	94	5	51	41	20	0	37	1.53
13255699--13255727	14	2.1	14	93	6	51	68	3	0	27	1.05
13261099--13261153	3	18.3	3	76	0	56	58	3	3	34	1.33
13261795--13261842	7	6.4	7	77	13	51	77	4	16	2	1.03
13262340--13262420	39	2.1	39	95	0	144	19	14	8	56	1.64
13262740--13263007	30	8.9	30	95	2	468	37	8	0	53	1.33
13262740--13263004	89	2.9	89	93	2	451	37	8	0	53	1.32
13265090--13265156	22	3.0	22	86	4	91	56	16	26	0	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13265103--13265176	22	3.4	21	84	3	85	52	17	28	1	1.53
13265103--13265176	21	3.4	21	83	3	85	52	17	28	1	1.53
13266538--13266578	20	2.0	20	85	0	55	63	0	2	34	1.08
13266553--13266607	18	2.9	19	81	7	67	60	0	1	38	1.08
13266539--13266624	38	2.3	38	74	13	88	60	0	1	38	1.04
13266544--13266608	18	3.5	19	81	8	62	61	0	1	36	1.05
13266578--13266631	26	2.1	27	86	6	76	51	1	0	46	1.11
13266954--13267049	19	5.1	18	83	9	97	28	4	2	65	1.22
13267145--13267352	87	2.4	87	82	4	265	36	9	19	35	1.83
13270114--13270175	17	3.7	17	72	16	58	48	0	0	51	1.00
13273589--13273631	19	2.3	19	100	0	86	18	30	0	51	1.47
13286168--13286209	21	2.0	21	81	9	50	28	0	4	66	1.12
13286982--13287010	2	14.5	2	100	0	58	0	48	0	51	1.00
13293264--13293730	206	2.3	199	84	5	591	40	10	19	29	1.84
13298229--13298289	31	2.0	31	86	0	86	39	19	0	40	1.52
13300227--13300275	21	2.3	21	78	0	53	38	0	16	44	1.48
13323605--13323662	30	1.9	30	89	0	89	41	3	24	31	1.71
13323874--13323905	13	2.5	13	94	0	55	31	0	12	56	1.37
13324000--13324241	50	4.7	50	86	4	297	26	24	29	19	1.99
13324000--13324249	100	2.4	103	88	6	364	26	24	29	20	1.99
13326988--13327254	104	2.6	104	94	0	462	30	30	20	18	1.96
13327583--13327646	29	2.2	29	81	10	76	31	26	6	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13327590--13327646	29	1.9	30	85	3	80	31	22	7	38	1.81
13336054--13336085	13	2.5	13	94	0	55	31	0	12	56	1.37
13336180--13336470	50	5.7	50	95	2	492	26	23	31	18	1.97
13338666--13338722	29	2.0	29	89	0	87	33	28	14	24	1.94
13344120--13344520	203	2.0	202	89	1	615	29	14	17	38	1.89
13344878--13344918	16	2.5	17	92	4	66	41	4	14	39	1.67
13357402--13357440	2	19.5	2	100	0	78	51	0	48	0	1.00
13358366--13358398	14	2.4	14	94	0	57	57	9	6	27	1.53
13361215--13361435	83	2.7	83	81	5	227	32	9	12	46	1.72
13361258--13361435	83	2.1	82	86	4	241	32	7	12	47	1.71
13374214--13374267	16	3.2	17	79	10	67	61	20	1	16	1.44
13374124--13374449	175	1.9	173	82	5	406	45	21	12	19	1.84
13382033--13382122	44	2.0	44	85	4	119	50	10	11	28	1.70
13390717--13390762	17	2.7	18	77	12	53	34	0	10	54	1.36
13391181--13391211	13	2.4	13	100	0	62	38	0	19	41	1.51
13402417--13402530	57	2.0	57	98	0	219	36	12	16	34	1.86
13405517--13405551	17	2.1	17	88	0	52	37	31	5	25	1.80
13412170--13412219	24	2.1	24	100	0	100	60	20	4	16	1.52
13413380--13413440	23	2.4	27	84	15	87	45	4	4	44	1.46
13413797--13413848	15	3.2	15	73	19	50	40	1	3	53	1.30
13416642--13416739	50	2.0	50	97	0	187	54	14	8	23	1.67
13418200--13418242	2	21.5	2	100	0	86	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13424271--13424318	21	2.3	21	88	0	69	33	14	18	33	1.91
13425231--13425267	16	2.3	17	86	13	60	37	0	0	62	0.96
13426420--13426457	20	1.9	19	94	5	67	36	2	0	60	1.11
13426421--13426464	20	2.2	20	88	8	63	36	2	2	59	1.23
13442060--13442089	16	1.9	15	93	6	51	30	13	0	56	1.37
13444105--13444193	46	1.9	46	86	0	124	20	31	28	20	1.97
13444473--13444523	20	2.6	19	81	12	59	29	7	1	60	1.36
13447191--13447247	30	1.9	30	82	7	71	42	1	1	54	1.21
13461949--13462074	6	21.0	6	68	18	50	54	0	43	0	1.11
13462792--13462843	16	3.2	16	78	5	52	17	1	15	65	1.36
13462792--13462855	27	2.3	27	81	7	67	17	1	12	68	1.28
13462942--13462981	20	2.0	20	90	0	62	27	10	12	50	1.72
13462927--13462993	34	1.9	35	90	3	109	31	8	13	46	1.74
13465919--13465995	24	3.2	24	64	20	61	50	9	7	32	1.63
13483097--13483143	24	2.0	24	84	16	62	19	12	2	65	1.35
13485396--13485441	21	2.2	21	84	7	58	47	0	2	50	1.13
13502053--13502116	26	2.4	26	82	15	69	42	7	0	50	1.31
13502928--13502966	18	2.2	17	86	4	51	2	7	10	79	1.02
13511670--13511792	42	2.9	41	85	4	165	18	19	18	43	1.89
13511842--13511884	20	2.2	20	91	0	68	30	9	13	46	1.75
13527203--13527483	139	2.0	139	90	0	445	44	13	26	15	1.83
13532422--13532461	20	2.0	21	90	5	64	42	10	0	47	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13535146--13535178	15	2.2	15	94	0	57	24	3	0	72	0.98
13542858--13542902	24	1.9	24	86	13	67	66	0	6	26	1.16
13546934--13546975	20	2.1	20	86	0	57	47	0	7	45	1.30
13549119--13549383	103	2.6	104	91	0	424	29	30	20	19	1.97
13549711--13549775	30	2.2	29	81	8	76	30	27	6	35	1.81
13549718--13549775	30	1.9	30	85	0	80	31	24	6	37	1.82
13556715--13556938	104	2.2	104	93	1	378	31	31	19	17	1.95
13557267--13557330	30	2.2	29	81	10	76	29	28	6	35	1.82
13557274--13557330	30	1.9	30	85	3	80	29	24	7	38	1.82
13565871--13565918	21	2.2	21	79	13	53	47	2	2	47	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144