Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 44 of 144
Found at i:13567065 original size:18 final size:19
Alignment explanation
Indices: 13567033--13567068 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
13567023 ATTTACAAAA
13567033 AAATTAAAATGATAAAATT
1 AAATTAAAATGATAAAATT
*
13567052 AAATT-AAATTATAAAAT
1 AAATTAAAATGATAAAAT
13567069 ACCAATTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (19 bp):
AAATTAAAATGATAAAATT
Found at i:13570404 original size:25 final size:25
Alignment explanation
Indices: 13570352--13570403 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
13570342 TTGAATATTA
* *
13570352 TTTAATTTATTTTCATTTATGTAAT
1 TTTAATTAATTTTCATTTATATAAT
*
13570377 TTTAATTAATTTTTATTT-TATAAT
1 TTTAATTAATTTTCATTTATATAAT
13570401 TTT
1 TTT
13570404 TTATAATAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 8 0.33
25 16 0.67
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (25 bp):
TTTAATTAATTTTCATTTATATAAT
Found at i:13574943 original size:9 final size:9
Alignment explanation
Indices: 13574929--13574978 Score: 59
Period size: 9 Copynumber: 5.6 Consensus size: 9
13574919 CATTTGAATA
13574929 AATAATTAT
1 AATAATTAT
13574938 AATAATTAT
1 AATAATTAT
13574947 AATAATTAT
1 AATAATTAT
13574956 -ATACA-TAT
1 AATA-ATTAT
*
13574964 AATATTTAT
1 AATAATTAT
13574973 ATATAA
1 A-ATAA
13574979 CTTAAACAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
8 6 0.17
9 26 0.74
10 3 0.09
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (9 bp):
AATAATTAT
Found at i:13576521 original size:18 final size:18
Alignment explanation
Indices: 13576498--13576536 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
13576488 ATGCCAGGTG
*
13576498 TGTATCCTAGCCCTTATA
1 TGTATCCTAACCCTTATA
13576516 TGTATCCTAACCCTTATA
1 TGTATCCTAACCCTTATA
13576534 TGT
1 TGT
13576537 TTCATTTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.26, G:0.10, T:0.41
Consensus pattern (18 bp):
TGTATCCTAACCCTTATA
Found at i:13576988 original size:24 final size:24
Alignment explanation
Indices: 13576961--13577008 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
13576951 CATTTAATAA
13576961 AATA-AAAATTGTTTTGAATATTTT
1 AATAGAAAATTGTTTT-AATATTTT
* *
13576985 AATAGTAAATTGTTTTTATATTTT
1 AATAGAAAATTGTTTTAATATTTT
13577009 TTCCTATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (24 bp):
AATAGAAAATTGTTTTAATATTTT
Found at i:13578438 original size:49 final size:50
Alignment explanation
Indices: 13578361--13578455 Score: 165
Period size: 49 Copynumber: 1.9 Consensus size: 50
13578351 TGGCTTTTAG
*
13578361 TACACAATGCGTTATGATATTACTTAAAGCTCCAAAATAGACGCTTAATA
1 TACACAATGCGTCATGATATTACTTAAAGCTCCAAAATAGACGCTTAATA
*
13578411 TACA-AATGCGTCCTGATATTACTTAAAGCTCCAAAATAGACGCTT
1 TACACAATGCGTCATGATATTACTTAAAGCTCCAAAATAGACGCTT
13578456 GACCACTTGG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
49 39 0.91
50 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.29
Consensus pattern (50 bp):
TACACAATGCGTCATGATATTACTTAAAGCTCCAAAATAGACGCTTAATA
Found at i:13580345 original size:125 final size:126
Alignment explanation
Indices: 13580120--13580367 Score: 304
Period size: 125 Copynumber: 2.0 Consensus size: 126
13580110 GGCCAAGCTA
*
13580120 GAACTACTGTAGAAAAAGAGCATCCACGTAAGAACTTTTTTCAGTAATTTTGCTAACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCAGCCACGTAAGAAC-TTTTTCAGTAATTTTGCTAACAGTGCATC
* * * * ** *
13580185 TTGCTTGAAATGTTTTTGACACTATTTTTTTAGAACCGTCTTCTCAAAATT-ATTTTTACAG
65 CTACTTGAAACGTTTTTAACACTAGCTTTTCAGAACCGTCTTCTCAAAATTAATTTTTACAG
* ** **
13580246 GAACTACTGTAGAAAAAGAGCGGCCACGTGGGAGA-TTTTTCAGTAATTTTGCTGATTA-TGCAT
1 GAACTACTGTAGAAAAAGAGCAGCCACGTAAGA-ACTTTTTCAGTAATTTTGCT-AACAGTGCAT
* * *
13580309 CCTATTTGAAGCGTTTTTAACATTAGCTTTTCAGAACCGTCTTCTCAAAATTAATTTTT
64 CCTACTTGAAACGTTTTTAACACTAGCTTTTCAGAACCGTCTTCTCAAAATTAATTTTT
13580368 CTAAAACTAC
Statistics
Matches: 103, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
125 65 0.63
126 37 0.36
127 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.38
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGAGCAGCCACGTAAGAACTTTTTCAGTAATTTTGCTAACAGTGCATCC
TACTTGAAACGTTTTTAACACTAGCTTTTCAGAACCGTCTTCTCAAAATTAATTTTTACAG
Found at i:13580530 original size:34 final size:34
Alignment explanation
Indices: 13580490--13580606 Score: 164
Period size: 34 Copynumber: 3.4 Consensus size: 34
13580480 TTTTAAAAAA
13580490 ATAAACCCTAATTTAATTAATTTATTTAAAACCC
1 ATAAACCCTAATTTAATTAATTTATTTAAAACCC
13580524 ATAAACCCTAATTTAATTAATTTATTTAAAACCC
1 ATAAACCCTAATTTAATTAATTTATTTAAAACCC
* * *** *
13580558 TTAAAACCTAATTTAATTAATTTTAAAAAAAACTC
1 ATAAACCCTAATTTAATTAA-TTTATTTAAAACCC
13580593 -TAAACCCTAATTTA
1 ATAAACCCTAATTTA
13580607 TTTTTTAAAA
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
34 65 0.87
35 10 0.13
ACGTcount: A:0.46, C:0.16, G:0.00, T:0.38
Consensus pattern (34 bp):
ATAAACCCTAATTTAATTAATTTATTTAAAACCC
Found at i:13588213 original size:196 final size:196
Alignment explanation
Indices: 13587879--13588270 Score: 784
Period size: 196 Copynumber: 2.0 Consensus size: 196
13587869 CTCAGCCCGA
13587879 TTAGTTAATAGGATATATAAATTTCACAATCTAATTTTCACTTTTATTTCAAGAATTCATTTTCA
1 TTAGTTAATAGGATATATAAATTTCACAATCTAATTTTCACTTTTATTTCAAGAATTCATTTTCA
13587944 ATATCAATTATACTTTTTCCCTTCACTAAGTAAAACACAGTTCAATACCAACACATATTTTCCTT
66 ATATCAATTATACTTTTTCCCTTCACTAAGTAAAACACAGTTCAATACCAACACATATTTTCCTT
13588009 AGTCAATTTAATTTTTTTCAAATTCAATTCAATAAAGTTACTTACCTTATTATATGCTTACCATA
131 AGTCAATTTAATTTTTTTCAAATTCAATTCAATAAAGTTACTTACCTTATTATATGCTTACCATA
13588074 C
196 C
13588075 TTAGTTAATAGGATATATAAATTTCACAATCTAATTTTCACTTTTATTTCAAGAATTCATTTTCA
1 TTAGTTAATAGGATATATAAATTTCACAATCTAATTTTCACTTTTATTTCAAGAATTCATTTTCA
13588140 ATATCAATTATACTTTTTCCCTTCACTAAGTAAAACACAGTTCAATACCAACACATATTTTCCTT
66 ATATCAATTATACTTTTTCCCTTCACTAAGTAAAACACAGTTCAATACCAACACATATTTTCCTT
13588205 AGTCAATTTAATTTTTTTCAAATTCAATTCAATAAAGTTACTTACCTTATTATATGCTTACCATA
131 AGTCAATTTAATTTTTTTCAAATTCAATTCAATAAAGTTACTTACCTTATTATATGCTTACCATA
13588270 C
196 C
13588271 ACATAATTTA
Statistics
Matches: 196, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
196 196 1.00
ACGTcount: A:0.35, C:0.18, G:0.05, T:0.42
Consensus pattern (196 bp):
TTAGTTAATAGGATATATAAATTTCACAATCTAATTTTCACTTTTATTTCAAGAATTCATTTTCA
ATATCAATTATACTTTTTCCCTTCACTAAGTAAAACACAGTTCAATACCAACACATATTTTCCTT
AGTCAATTTAATTTTTTTCAAATTCAATTCAATAAAGTTACTTACCTTATTATATGCTTACCATA
C
Found at i:13589388 original size:234 final size:234
Alignment explanation
Indices: 13588979--13589453 Score: 941
Period size: 234 Copynumber: 2.0 Consensus size: 234
13588969 TCATTTGTTT
13588979 AATTTTATGCATTAGTTAATAATAATATATTATTATAATCATATAATAATATTTTATTCACAAAT
1 AATTTTATGCATTAGTTAATAATAATATATTATTATAATCATATAATAATATTTTATTCACAAAT
13589044 ATCTTTTACTTAAATTATAAGAAAATGTTTTATTTTTATTACAAGAGTGTTTTTATATATTTTAC
66 ATCTTTTACTTAAATTATAAGAAAATGTTTTATTTTTATTACAAGAGTGTTTTTATATATTTTAC
13589109 ACATGTATTATTTTATCACCACACAATTGTCTTTATCTTATTTGTTCCTTATAATATATTATCTT
131 ACATGTATTATTTTATCACCACACAATTGTCTTTATCTTATTTGTTCCTTATAATATATTATCTT
13589174 AATTTTAATTAATATAATTTATAATATTTTAATTTAATA
196 AATTTTAATTAATATAATTTATAATATTTTAATTTAATA
13589213 AATTTTATGCATTAGTTAATAATAATATATTATTATAATCATATAATAATATTTTATTCACAAAT
1 AATTTTATGCATTAGTTAATAATAATATATTATTATAATCATATAATAATATTTTATTCACAAAT
13589278 ATCTTTTACTTAAATTATAAGAAAATGTTTTATTTTTATTACAAGAGTGTTTTTATATATTTTAC
66 ATCTTTTACTTAAATTATAAGAAAATGTTTTATTTTTATTACAAGAGTGTTTTTATATATTTTAC
13589343 ACATGTATTATTTTATCACCACACAATTGTCTTTATCTTATTTGTTCCTTATAATATATTATCTT
131 ACATGTATTATTTTATCACCACACAATTGTCTTTATCTTATTTGTTCCTTATAATATATTATCTT
13589408 AATTTTAATTAATATAATTTATAATATTTTAATTTAATA
196 AATTTTAATTAATATAATTTATAATATTTTAATTTAATA
13589447 ATATTTT
1 A-ATTTT
13589454 TATAATATAA
Statistics
Matches: 240, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
234 235 0.98
235 5 0.02
ACGTcount: A:0.37, C:0.08, G:0.04, T:0.51
Consensus pattern (234 bp):
AATTTTATGCATTAGTTAATAATAATATATTATTATAATCATATAATAATATTTTATTCACAAAT
ATCTTTTACTTAAATTATAAGAAAATGTTTTATTTTTATTACAAGAGTGTTTTTATATATTTTAC
ACATGTATTATTTTATCACCACACAATTGTCTTTATCTTATTTGTTCCTTATAATATATTATCTT
AATTTTAATTAATATAATTTATAATATTTTAATTTAATA
Found at i:13589440 original size:15 final size:16
Alignment explanation
Indices: 13589422--13589453 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
13589412 TTAATTAATA
13589422 TAATTT-ATAATATTT
1 TAATTTAATAATATTT
13589437 TAATTTAATAATATTT
1 TAATTTAATAATATTT
13589453 T
1 T
13589454 TATAATATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTAATAATATTT
Found at i:13589444 original size:25 final size:26
Alignment explanation
Indices: 13589409--13589461 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 26
13589399 TATTATCTTA
13589409 ATTTTAATTAAT-ATA-ATTTATAAT
1 ATTTTAATTAATAATATATTTATAAT
*
13589433 ATTTTAATTTAATAATATTTTTATAAT
1 ATTTTAA-TTAATAATATATTTATAAT
13589460 AT
1 AT
13589462 AAATCAAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 7 0.28
25 5 0.20
26 3 0.12
27 10 0.40
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (26 bp):
ATTTTAATTAATAATATATTTATAAT
Found at i:13596093 original size:18 final size:18
Alignment explanation
Indices: 13596072--13596107 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
13596062 TTTATATTTT
*
13596072 AATTAAATTAAATTAAAA
1 AATTAAATTAAATGAAAA
*
13596090 AATTCAATTAAATGAAAA
1 AATTAAATTAAATGAAAA
13596108 TAAAAATATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (18 bp):
AATTAAATTAAATGAAAA
Found at i:13597212 original size:29 final size:29
Alignment explanation
Indices: 13597180--13597235 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
13597170 TCAAGTCAAC
*
13597180 AAATAATTTGAAAATAAAAAAATAAAAAA
1 AAATAATTTAAAAATAAAAAAATAAAAAA
* *
13597209 AAATAATTTAAAAATTAAAATATAAAA
1 AAATAATTTAAAAATAAAAAAATAAAA
13597236 TATAAAAAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (29 bp):
AAATAATTTAAAAATAAAAAAATAAAAAA
Found at i:13599177 original size:25 final size:25
Alignment explanation
Indices: 13599123--13599170 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
13599113 AAAGCTCGTG
* * *
13599123 TGAGTTGTATAACGGGAAGCTCACT
1 TGAGCTGTATATCGGGAAGTTCACT
*
13599148 CGAGCTGTATATCGGGAAGTTCA
1 TGAGCTGTATATCGGGAAGTTCA
13599171 TATGAGCCAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (25 bp):
TGAGCTGTATATCGGGAAGTTCACT
Found at i:13599189 original size:25 final size:25
Alignment explanation
Indices: 13599161--13599216 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
13599151 GCTGTATATC
*
13599161 GGGAAGTTCATA-TGAGCCATAAATT
1 GGGAAGTTCA-AGAGAGCCATAAATT
*
13599186 GGGAAGTTCAAGAGAGCCATTAATT
1 GGGAAGTTCAAGAGAGCCATAAATT
13599211 GGGAAG
1 GGGAAG
13599217 CTCGTGAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 1 0.04
25 27 0.96
ACGTcount: A:0.36, C:0.11, G:0.30, T:0.23
Consensus pattern (25 bp):
GGGAAGTTCAAGAGAGCCATAAATT
Found at i:13612999 original size:18 final size:17
Alignment explanation
Indices: 13612962--13613000 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
13612952 TTATAAAACT
*
13612962 AATAAATTATTTTATCA
1 AATAAATTATTTAATCA
*
13612979 AATAAATTTATTTAATTA
1 AATAAA-TTATTTAATCA
13612997 AATA
1 AATA
13613001 GTTTAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (17 bp):
AATAAATTATTTAATCA
Found at i:13613781 original size:19 final size:20
Alignment explanation
Indices: 13613748--13613804 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
13613738 ACAACAAAAA
*
13613748 TTATAAAATAATTCAAAATAAT
1 TTATAAAA-ATTTCAAAAT-AT
*
13613770 TT-T-TAAATTTCAAAATAT
1 TTATAAAAATTTCAAAATAT
13613788 TTATAAAAATTTCAAAA
1 TTATAAAAATTTCAAAA
13613805 AAAATTCTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
18 4 0.13
19 10 0.33
20 13 0.43
21 1 0.03
22 2 0.07
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.40
Consensus pattern (20 bp):
TTATAAAAATTTCAAAATAT
Found at i:13615219 original size:21 final size:20
Alignment explanation
Indices: 13615194--13615233 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
13615184 CTTCCCCCAT
*
13615194 TCTCAATTGATTCTTTTTTTC
1 TCTCAACTG-TTCTTTTTTTC
*
13615215 TCTCACCTGTTCTTTTTTT
1 TCTCAACTGTTCTTTTTTT
13615234 TACTACTTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.10, C:0.23, G:0.05, T:0.62
Consensus pattern (20 bp):
TCTCAACTGTTCTTTTTTTC
Found at i:13622967 original size:45 final size:46
Alignment explanation
Indices: 13622903--13622994 Score: 150
Period size: 45 Copynumber: 2.0 Consensus size: 46
13622893 GAATCCTTCT
* *
13622903 TCTAAACTGCCACTAATATAGATCATTTTTTCCACTG-ATATTAAA
1 TCTAAACTGCCACAAATATAGATCATTTTTTCAACTGCATATTAAA
*
13622948 TCTAAACTGCCACAAATATAGATCATTTTTTCAATTGCATATTAAA
1 TCTAAACTGCCACAAATATAGATCATTTTTTCAACTGCATATTAAA
13622994 T
1 T
13622995 GCTTTTGTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
45 34 0.79
46 9 0.21
ACGTcount: A:0.37, C:0.18, G:0.07, T:0.38
Consensus pattern (46 bp):
TCTAAACTGCCACAAATATAGATCATTTTTTCAACTGCATATTAAA
Found at i:13630552 original size:62 final size:63
Alignment explanation
Indices: 13630485--13630611 Score: 186
Period size: 62 Copynumber: 2.0 Consensus size: 63
13630475 TGCGCTTACA
* * *
13630485 TTTTTTCTCAATCCATTTAAAGATCATGTTAAC-TTA-ATATCATATTTTTCTTATACATTAAG
1 TTTTTTCTCAATCCATTTAAAGATCATCTTAACATCATATATCA-ATTTATCTTATACATTAAG
* *
13630547 TTTTTTCTCAATCCATTTAAAGATCATCTTAACATCATTTGTCAATTTATCTTATACATTAAG
1 TTTTTTCTCAATCCATTTAAAGATCATCTTAACATCATATATCAATTTATCTTATACATTAAG
13630610 TT
1 TT
13630612 AACAAATAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
62 32 0.55
63 22 0.38
64 4 0.07
ACGTcount: A:0.31, C:0.16, G:0.05, T:0.48
Consensus pattern (63 bp):
TTTTTTCTCAATCCATTTAAAGATCATCTTAACATCATATATCAATTTATCTTATACATTAAG
Found at i:13630706 original size:12 final size:12
Alignment explanation
Indices: 13630689--13630723 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
13630679 TGAAGTACTA
13630689 TAGATTGTCATG
1 TAGATTGTCATG
13630701 TAGATTGTCATG
1 TAGATTGTCATG
* *
13630713 CAGGTTGTCAT
1 TAGATTGTCAT
13630724 ATTTAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.23, C:0.11, G:0.26, T:0.40
Consensus pattern (12 bp):
TAGATTGTCATG
Found at i:13640421 original size:29 final size:29
Alignment explanation
Indices: 13640372--13640428 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
13640362 CAGCGATGCC
* *
13640372 TTCGAACCAATAACTCAGATATCACTTGG
1 TTCGAACCAACAACTCAGATACCACTTGG
*
13640401 TTCGAACCAACAGA-TCGGATACCACTTG
1 TTCGAACCAACA-ACTCAGATACCACTTG
13640429 TCACGGGGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 23 0.96
30 1 0.04
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (29 bp):
TTCGAACCAACAACTCAGATACCACTTGG
Found at i:13642005 original size:30 final size:30
Alignment explanation
Indices: 13641969--13642028 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
13641959 CATAATTCAG
13641969 ACAACCATTTTACAGTCTCCCCTCTTCTAT
1 ACAACCATTTTACAGTCTCCCCTCTTCTAT
13641999 ACAACCATTTTACAGTCTCCCCTCTTCTAT
1 ACAACCATTTTACAGTCTCCCCTCTTCTAT
13642029 CTCTTGCAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.37, G:0.03, T:0.37
Consensus pattern (30 bp):
ACAACCATTTTACAGTCTCCCCTCTTCTAT
Found at i:13659128 original size:21 final size:21
Alignment explanation
Indices: 13659104--13659145 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
13659094 CTGCAAAATC
* *
13659104 GAAGGCAATATTTTAATTTGG
1 GAAGGCAATAGTTTAAGTTGG
*
13659125 GAAGGTAATAGTTTAAGTTGG
1 GAAGGCAATAGTTTAAGTTGG
13659146 TTACCTCGAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.02, G:0.29, T:0.36
Consensus pattern (21 bp):
GAAGGCAATAGTTTAAGTTGG
Found at i:13663614 original size:19 final size:18
Alignment explanation
Indices: 13663576--13663627 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 18
13663566 ACTACTTTTC
*
13663576 ATTTAATATTAAAAACAT
1 ATTTAATTTTAAAAACAT
13663594 ATATTAATTTTAAACAA-AT
1 AT-TTAATTTTAAA-AACAT
13663613 ATTGTAATTATTAAA
1 ATT-TAATT-TTAAA
13663628 TAATAATTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
18 3 0.10
19 19 0.66
20 7 0.24
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (18 bp):
ATTTAATTTTAAAAACAT
Found at i:13667000 original size:121 final size:121
Alignment explanation
Indices: 13666786--13667273 Score: 967
Period size: 121 Copynumber: 4.0 Consensus size: 121
13666776 GTAAGGAAAA
13666786 ATTGCAGCAAAAAATAATAACAAAAATTATTGGCACAATTTCTCATAACAAAATTTCACATTTTC
1 ATTGCAGCAAAAAATAATAACAAAAATTATTGGCACAATTTCTCATAACAAAATTTCACATTTTC
13666851 CAGAAATCAACCCTTAAACCCTAAACCCTAGATTAGTGAATCAGGTATATGACATT
66 CAGAAATCAACCCTTAAACCCTAAACCCTAGATTAGTGAATCAGGTATATGACATT
13666907 ATTGCAGCAAAAAATAATAACAAAAATTATTGGCACAATTTCTCATAACAAAATTTCACATTTTC
1 ATTGCAGCAAAAAATAATAACAAAAATTATTGGCACAATTTCTCATAACAAAATTTCACATTTTC
13666972 CAGAAATCAACCCTTAAACCCTAAACCCTAGATTAGTGAATCAGGTATATGACATT
66 CAGAAATCAACCCTTAAACCCTAAACCCTAGATTAGTGAATCAGGTATATGACATT
13667028 ATTGCAGCAAAAAATAATAACAAAAATTATTGGCACAATTTCTCATAACAAAATTTCACATTTTC
1 ATTGCAGCAAAAAATAATAACAAAAATTATTGGCACAATTTCTCATAACAAAATTTCACATTTTC
13667093 CAGAAATCAACCCTTAAACCCTAAACCCTAGATTAGTGAATCAGGTATATGACATT
66 CAGAAATCAACCCTTAAACCCTAAACCCTAGATTAGTGAATCAGGTATATGACATT
13667149 ATTGCAGCAAAAAATAATAACAAAAATTATTGGCACAATTTCTCATAACAAAATTTCACATTTTC
1 ATTGCAGCAAAAAATAATAACAAAAATTATTGGCACAATTTCTCATAACAAAATTTCACATTTTC
13667214 CAGAAATCAACACCTTAAACCCTAAACCCTAGATTAGTGAATCAGGTATATGACATT
66 CAGAAATCAAC-CCTTAAACCCTAAACCCTAGATTAGTGAATCAGGTATATGACATT
13667271 ATT
1 ATT
13667274 AGCGGCCATA
Statistics
Matches: 366, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
121 318 0.87
122 48 0.13
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (121 bp):
ATTGCAGCAAAAAATAATAACAAAAATTATTGGCACAATTTCTCATAACAAAATTTCACATTTTC
CAGAAATCAACCCTTAAACCCTAAACCCTAGATTAGTGAATCAGGTATATGACATT
Found at i:13676272 original size:26 final size:26
Alignment explanation
Indices: 13676236--13676296 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
13676226 TAAGTTTGAA
*
13676236 GTATGAGTTAGAGTCGGACAGGGGCC
1 GTATGAGTTAGAGTCAGACAGGGGCC
13676262 GTATGAGTTAGAGTCAGACAGGGGCC
1 GTATGAGTTAGAGTCAGACAGGGGCC
13676288 G-A-GAGTTAG
1 GTATGAGTTAG
13676297 CTTGGCTTCT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
24 7 0.21
25 1 0.03
26 26 0.76
ACGTcount: A:0.26, C:0.13, G:0.41, T:0.20
Consensus pattern (26 bp):
GTATGAGTTAGAGTCAGACAGGGGCC
Found at i:13685022 original size:44 final size:42
Alignment explanation
Indices: 13684915--13685891 Score: 573
Period size: 46 Copynumber: 22.7 Consensus size: 42
13684905 ATTATACAGG
* * *
13684915 TCTTATCTCCCTGAGAATACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-A--T-AGA
*
13684961 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATAG--A
* * * * *
13685005 TCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG---GA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATAGA
* * * * *
13685044 TCTTATCTCTCTGA-AGTTACAGTAGAGAAGATC--ACATCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGAT-AGA
** * *
13685085 TCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-A--T-AGA
* ** *
13685131 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAAAGGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG--ATA-GA
*
13685176 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATAG--A
* * * * *
13685220 TCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG---GA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATAGA
* * * * *
13685259 TCTTATCTCTCTGA-AGTTACAGTAGAGAAGATC--ACATCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGAT-AGA
** * *
13685300 TCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-A--T-AGA
* ** *
13685346 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAAAGGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG--ATA-GA
*
13685391 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATAG--A
* * * * *
13685435 TCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG---GA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATAGA
* * * * *
13685474 TCTTATCTCTCTGA-AGTTACAGTAGAGAAGATC--ACATCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGAT-AGA
** * *
13685515 TCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-A--T-AGA
* ** *
13685561 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAAAGGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG--ATA-GA
*
13685606 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATAG--A
* * * * *
13685650 TCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG---GA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATAGA
* * * * *
13685689 TCTTATCTCTCTGA-AGTTACAGTAGAGAAGATC--ACATCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGAT-AGA
** * *
13685730 TCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-A--T-AGA
* ** *
13685776 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAAAGGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG--ATA-GA
* * * *
13685821 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATA-GA
*
13685864 TCCTATCTCCCTGA-AGTTACAGTGGAGC
1 TCTTATCTCCCTGAGA-TTACAGTGGAGC
13685892 GGATTAAAAT
Statistics
Matches: 711, Mismatches: 159, Indels: 125
0.71 0.16 0.13
Matches are distributed among these distances:
37 4 0.01
38 4 0.01
39 96 0.14
41 112 0.16
42 10 0.01
43 38 0.05
44 132 0.19
45 142 0.20
46 169 0.24
47 4 0.01
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (42 bp):
TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATAGA
Found at i:13685287 original size:215 final size:215
Alignment explanation
Indices: 13684959--13685980 Score: 1832
Period size: 215 Copynumber: 4.7 Consensus size: 215
13684949 AAGAATTTCA
13684959 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTA
13685024 CAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTT
66 CAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTT
13685089 ATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGATCTTATCTCCCTGAGGTTACAGT
131 ATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGATCTTATCTCCCTGAGGTTACAGT
13685154 GGAGCAGATTGAAGCCAAAG
196 GGAGCAGATTGAAGCCAAAG
13685174 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTA
13685239 CAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTT
66 CAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTT
13685304 ATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGATCTTATCTCCCTGAGGTTACAGT
131 ATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGATCTTATCTCCCTGAGGTTACAGT
13685369 GGAGCAGATTGAAGCCAAAG
196 GGAGCAGATTGAAGCCAAAG
13685389 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTA
13685454 CAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTT
66 CAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTT
13685519 ATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGATCTTATCTCCCTGAGGTTACAGT
131 ATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGATCTTATCTCCCTGAGGTTACAGT
13685584 GGAGCAGATTGAAGCCAAAG
196 GGAGCAGATTGAAGCCAAAG
13685604 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTA
13685669 CAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTT
66 CAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTT
13685734 ATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGATCTTATCTCCCTGAGGTTACAGT
131 ATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGATCTTATCTCCCTGAGGTTACAGT
13685799 GGAGCAGATTGAAGCCAAAG
196 GGAGCAGATTGAAGCCAAAG
* * * *
13685819 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACT-ATCCTATCTCCCTGA-AGTT
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGA-TT
* * * * * *
13685882 ACAGTGGAGCGGATTAAAATAAAGGACCTTATCTCTCTGAGGTTACAGCAGAGTAGATCGCATCA
65 ACAATGGAGCGGA-T----TAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCA
* * * * * *
13685947 AGTCTTATTTCCCTGAAAATGCAGTGGAACAGAC
125 GGTCTTATCTCCCTGAGATTACAGTGGAATAGAC
13685981 TGAAAACAAT
Statistics
Matches: 785, Mismatches: 16, Indels: 8
0.97 0.02 0.01
Matches are distributed among these distances:
213 1 0.00
214 28 0.04
215 687 0.88
219 69 0.09
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (215 bp):
GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTA
CAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTT
ATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGATCTTATCTCCCTGAGGTTACAGT
GGAGCAGATTGAAGCCAAAG
Found at i:13685885 original size:43 final size:44
Alignment explanation
Indices: 13685129--13685891 Score: 162
Period size: 45 Copynumber: 17.7 Consensus size: 44
13685119 AAGAATTTCG
* * * *
13685129 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAAAG
1 GATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAG-CAAAC
* * * *
13685174 GATCTTATCTCCCTG-AGATTACAGCGGAGCAGATCAAAG-ATA-
1 GATCCTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGCAAAC
* * ** *
13685216 GTAATCCTATCTCCTTG-AGATTACAATGGAGC-G---G-ATTAAAG
1 G--ATCCTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGCAAAC
* * * * *
13685257 GATCTTATCTCTCTGAAGTTACAGTAGAGAAGATC--A-C-ATC
1 GATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGCAAAC
* * ** * * *
13685297 AGGTCTTATCTCCCTG-AGATTACAGTGGAATAGACCAAAG-AATTTC
1 -GATCCTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGCAA--AC
* * * *
13685343 GGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAAAG
1 -GATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAG-CAAAC
* * * *
13685389 GATCTTATCTCCCTG-AGATTACAGCGGAGCAGATCAAAG-ATA-
1 GATCCTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGCAAAC
* * ** *
13685431 GTAATCCTATCTCCTTG-AGATTACAATGGAGC-G---G-ATTAAAG
1 G--ATCCTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGCAAAC
* * * * *
13685472 GATCTTATCTCTCTGAAGTTACAGTAGAGAAGATC--A-C-ATC
1 GATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGCAAAC
* * ** * * *
13685512 AGGTCTTATCTCCCTG-AGATTACAGTGGAATAGACCAAAG-AATTTC
1 -GATCCTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGCAA--AC
* * * *
13685558 GGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAAAG
1 -GATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAG-CAAAC
* * * *
13685604 GATCTTATCTCCCTG-AGATTACAGCGGAGCAGATCAAAG-ATA-
1 GATCCTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGCAAAC
* * ** *
13685646 GTAATCCTATCTCCTTG-AGATTACAATGGAGC-G---G-ATTAAAG
1 G--ATCCTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGCAAAC
* * * * *
13685687 GATCTTATCTCTCTGAAGTTACAGTAGAGAAGATC--A-C-ATC
1 GATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGCAAAC
* * ** * * *
13685727 AGGTCTTATCTCCCTG-AGATTACAGTGGAATAGACCAAAG-AATTTC
1 -GATCCTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGCAA--AC
* * * *
13685773 GGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAAAG
1 -GATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAG-CAAAC
* * *
13685819 GATCTTATCTCCCTG-AGATTACAGCGGAGCAGATCGAAG-ACAC
1 GATCCTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGCAAAC
*
13685862 TATCCTATCTCCCTGAAGTTACAGTGGAGC
1 GATCCTATCTCCCTGAAGTTACAGTGGAGC
13685892 GGATTAAAAT
Statistics
Matches: 534, Mismatches: 119, Indels: 132
0.68 0.15 0.17
Matches are distributed among these distances:
39 63 0.12
40 24 0.04
41 81 0.15
42 6 0.01
43 38 0.07
44 84 0.16
45 133 0.25
46 96 0.18
47 3 0.01
48 6 0.01
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (44 bp):
GATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGCAAAC
Found at i:13685928 original size:87 final size:88
Alignment explanation
Indices: 13685779--13685941 Score: 229
Period size: 87 Copynumber: 1.9 Consensus size: 88
13685769 TTTCGGATCT
* ** *
13685779 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAAAGGATCTTATCTCCCTGAGATTACAGC
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTGAAAACAAAGGACCTTATCTCCCTGAGATTACAGC
*
13685844 GGAGCAGATCGAAGACACTATCC
66 AGAGCAGATCGAAGACACTATCC
* * * *
13685867 TATCTCCCTGAAGTTACAGTGGAGCGGATT-AAAATAAAGGACCTTATCTCTCTGAGGTTACAGC
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTGAAAACAAAGGACCTTATCTCCCTGAGATTACAGC
*
13685931 AGAGTAGATCG
66 AGAGCAGATCG
13685942 CATCAAGTCT
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
87 37 0.57
88 28 0.43
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (88 bp):
TATCTCCCTGAAGTTACAGTGGAGCAGATTGAAAACAAAGGACCTTATCTCCCTGAGATTACAGC
AGAGCAGATCGAAGACACTATCC
Found at i:13691279 original size:23 final size:21
Alignment explanation
Indices: 13691235--13691280 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
13691225 AACCTTTTGA
* *
13691235 ATTTATATATATTTTTAGATT
1 ATTTATATATATTTTAAAATT
13691256 ATTTATATATATATTTGAAAATT
1 ATTTATATATAT-TTT-AAAATT
13691279 AT
1 AT
13691281 CAATATCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 12 0.57
22 3 0.14
23 6 0.29
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (21 bp):
ATTTATATATATTTTAAAATT
Found at i:13693112 original size:50 final size:50
Alignment explanation
Indices: 13692997--13693245 Score: 318
Period size: 50 Copynumber: 4.8 Consensus size: 50
13692987 GATAATAACA
* * ** *
13692997 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCATCTCGG
* * *
13693048 TGCCCATGCCATGTCTCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
13693098 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
13693148 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTCAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATCTC--GG
* * *
13693203 ATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
13693246 TTACCCAAAT
Statistics
Matches: 174, Mismatches: 18, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
50 96 0.55
51 32 0.18
53 5 0.03
55 2 0.01
56 39 0.22
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:13693175 original size:100 final size:103
Alignment explanation
Indices: 13692996--13693245 Score: 353
Period size: 100 Copynumber: 2.4 Consensus size: 103
13692986 TGATAATAAC
** * *
13692996 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGGTGCCAATGCCATG
* *
13693061 TCTCAGACATGGTCTTACGGGGGACCTCTC-ATCTC-GG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTCAGG
*
13693098 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGT
13693162 CCCAGACATGGTCTTACAGGGGACCTCTCATGATCTCAAGG
66 CCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTC-AGG
* * *
13693203 ATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
13693246 TTACCCAAAT
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
100 50 0.38
101 36 0.27
103 5 0.04
105 2 0.02
106 39 0.30
ACGTcount: A:0.22, C:0.30, G:0.23, T:0.26
Consensus pattern (103 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTCAGG
Found at i:13696169 original size:24 final size:25
Alignment explanation
Indices: 13696142--13696241 Score: 141
Period size: 25 Copynumber: 4.0 Consensus size: 25
13696132 TATTACAGCC
13696142 CCTCTC-TTTTCTTTAATCCCTTGT
1 CCTCTCTTTTTCTTTAATCCCTTGT
*
13696166 CCTCTCTTTTTTTTTAATCCCTTGTGT
1 CCTCTCTTTTTCTTTAATCCC-T-TGT
*
13696193 CCTCTC-TTTTCTTTAATCTCTTGT
1 CCTCTCTTTTTCTTTAATCCCTTGT
*
13696217 CCTCTCTTTTTTTTTAATCCCTTGT
1 CCTCTCTTTTTCTTTAATCCCTTGT
13696242 GTTAGGTATT
Statistics
Matches: 67, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
24 15 0.22
25 30 0.45
26 13 0.19
27 9 0.13
ACGTcount: A:0.08, C:0.29, G:0.05, T:0.58
Consensus pattern (25 bp):
CCTCTCTTTTTCTTTAATCCCTTGT
Found at i:13696197 original size:51 final size:51
Alignment explanation
Indices: 13696142--13696243 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
13696132 TATTACAGCC
13696142 CCTCTCTTTTCTTTAATCCCTTGTCCTCTCTTTTTTTTTAATCCCTTGTGT
1 CCTCTCTTTTCTTTAATCCCTTGTCCTCTCTTTTTTTTTAATCCCTTGTGT
*
13696193 CCTCTCTTTTCTTTAATCTCTTGTCCTCTCTTTTTTTTTAATCCCTTGTGT
1 CCTCTCTTTTCTTTAATCCCTTGTCCTCTCTTTTTTTTTAATCCCTTGTGT
13696244 TAGGTATTCA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.08, C:0.28, G:0.06, T:0.58
Consensus pattern (51 bp):
CCTCTCTTTTCTTTAATCCCTTGTCCTCTCTTTTTTTTTAATCCCTTGTGT
Found at i:13700965 original size:38 final size:38
Alignment explanation
Indices: 13700918--13700991 Score: 139
Period size: 38 Copynumber: 1.9 Consensus size: 38
13700908 TTGGTATAGT
13700918 TGGTCAGTACTCATCAATGAGTTAAAAAACAGACTTGG
1 TGGTCAGTACTCATCAATGAGTTAAAAAACAGACTTGG
*
13700956 TGGTCAGTACTCATCAATGAGTTAAAAAACATACTT
1 TGGTCAGTACTCATCAATGAGTTAAAAAACAGACTT
13700992 TTGATCCAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (38 bp):
TGGTCAGTACTCATCAATGAGTTAAAAAACAGACTTGG
Found at i:13701895 original size:26 final size:26
Alignment explanation
Indices: 13701882--13701964 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 26
13701872 CTCCCGGTAG
*
13701882 AATTTTGATGATTTTACCCCCAATAA
1 AATTTTGACGATTTTACCCCCAATAA
13701908 AATTTTGACGATTTTACCCCCAATAA
1 AATTTTGACGATTTTACCCCCAATAA
* *
13701934 AATTTTGACGATTTTATCCCTAATAA
1 AATTTTGACGATTTTACCCCCAATAA
13701960 AATTT
1 AATTT
13701965 CGAGAAAATT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.35, C:0.18, G:0.07, T:0.40
Consensus pattern (26 bp):
AATTTTGACGATTTTACCCCCAATAA
Found at i:13701909 original size:52 final size:52
Alignment explanation
Indices: 13701853--13701964 Score: 134
Period size: 52 Copynumber: 2.2 Consensus size: 52
13701843 TTTACCCTAG
* * ** * *
13701853 TAAAATTTTAATAATTTTACTCCCGGTAGAATTTTGATGATTTTACCCCCAA
1 TAAAATTTTAACAATTTTACCCCCAATAAAATTTTGACGATTTTACCCCCAA
* * * *
13701905 TAAAATTTTGACGATTTTACCCCCAATAAAATTTTGACGATTTTATCCCTAA
1 TAAAATTTTAACAATTTTACCCCCAATAAAATTTTGACGATTTTACCCCCAA
13701957 TAAAATTT
1 TAAAATTT
13701965 CGAGAAAATT
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.35, C:0.17, G:0.08, T:0.40
Consensus pattern (52 bp):
TAAAATTTTAACAATTTTACCCCCAATAAAATTTTGACGATTTTACCCCCAA
Found at i:13719748 original size:5 final size:5
Alignment explanation
Indices: 13719734--13719767 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
13719724 ACCACACAAT
* *
13719734 TTAAA GTAAA ATAAA TTAAA TTAAA TTAAA TTAA
1 TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA TTAA
13719768 TGGACGTTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (5 bp):
TTAAA
Found at i:13720201 original size:16 final size:15
Alignment explanation
Indices: 13720143--13720201 Score: 50
Period size: 15 Copynumber: 3.8 Consensus size: 15
13720133 ATAATTATAA
13720143 TTATTT-TAAAATTT
1 TTATTTATAAAATTT
*
13720157 TATATTTGATAAGAATTA
1 T-TATTT-ATAA-AATTT
*
13720175 TT-TTTAAAAAATATT
1 TTATTTATAAAAT-TT
13720190 TTATTTATAAAA
1 TTATTTATAAAA
13720202 AATGAAAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
14 4 0.11
15 11 0.31
16 11 0.31
17 4 0.11
18 5 0.14
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (15 bp):
TTATTTATAAAATTT
Found at i:13720332 original size:12 final size:12
Alignment explanation
Indices: 13720315--13720349 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
13720305 ATTTGTTTAC
13720315 AAAAAGAAAAGG
1 AAAAAGAAAAGG
*
13720327 AAAAAGAAAAAG
1 AAAAAGAAAAGG
*
13720339 AAAAAGGAAAG
1 AAAAAGAAAAG
13720350 AGTAATAAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (12 bp):
AAAAAGAAAAGG
Found at i:13741879 original size:12 final size:12
Alignment explanation
Indices: 13741862--13741888 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
13741852 AAAAAGCAGA
13741862 TTTATTTATCAT
1 TTTATTTATCAT
13741874 TTTATTTATCAT
1 TTTATTTATCAT
13741886 TTT
1 TTT
13741889 TGAATAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.70
Consensus pattern (12 bp):
TTTATTTATCAT
Found at i:13742247 original size:56 final size:56
Alignment explanation
Indices: 13742161--13742270 Score: 193
Period size: 56 Copynumber: 2.0 Consensus size: 56
13742151 GAAATTGTAA
*
13742161 GGAAACATTACACATATGCCCAGGGGTATTTTTGGAATTAACCAACAGATATTCAG
1 GGAAACATTACACATATGCCCAGGGGTATTTTTGCAATTAACCAACAGATATTCAG
* *
13742217 GGAAACATTACACATATTCCCAGGGGTATTTTTGCAATTAACCAACGGATATTC
1 GGAAACATTACACATATGCCCAGGGGTATTTTTGCAATTAACCAACAGATATTC
13742271 CATCCTCCAG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 51 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (56 bp):
GGAAACATTACACATATGCCCAGGGGTATTTTTGCAATTAACCAACAGATATTCAG
Found at i:13751469 original size:31 final size:31
Alignment explanation
Indices: 13751401--13751469 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 31
13751391 ATATTAAATT
*
13751401 TAAAATTTGAAAATTTGAAAAGTAGATAAAC
1 TAAAATTTGAAAATTTGAAAAGTAAATAAAC
*
13751432 TAAAATTT-AACAATTTG-AAAGATAAATGAAC
1 TAAAATTTGAA-AATTTGAAAAG-TAAATAAAC
*
13751463 TCAAATT
1 TAAAATT
13751470 GATTAAATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 6 0.18
31 27 0.82
ACGTcount: A:0.54, C:0.06, G:0.10, T:0.30
Consensus pattern (31 bp):
TAAAATTTGAAAATTTGAAAAGTAAATAAAC
Found at i:13752536 original size:19 final size:20
Alignment explanation
Indices: 13752512--13752551 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
13752502 TTTTACGTAT
13752512 TTTTAT-ATAATAT-TAAAAA
1 TTTTATCAT-ATATGTAAAAA
13752531 TTTTATCATATATGTAAAAA
1 TTTTATCATATATGTAAAAA
13752551 T
1 T
13752552 CACATATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (20 bp):
TTTTATCATATATGTAAAAA
Found at i:13754146 original size:167 final size:167
Alignment explanation
Indices: 13753877--13754489 Score: 1140
Period size: 167 Copynumber: 3.7 Consensus size: 167
13753867 TGACACCGAT
13753877 CGGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTCACGT
1 CGGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTCACGT
13753942 CGGGTTCAAAGTCCTGAAACGATCGGATCCATTTTTTTTTCCTCTTCAGATATTGTGTGCAAAAG
66 CGGGTTCAAAGTCCTGAAACGATCGGATCCATTTTTTTTTCCTCTTCAGATATTGTGTGCAAAAG
13754007 AGTATGAGGCTCAGGTATATTTACAGGTGAAATCTAA
131 AGTATGAGGCTCAGGTATATTTACAGGTGAAATCTAA
*
13754044 CGGATCCGTGGCGCAGTGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTCACGT
1 CGGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTCACGT
13754109 CGGGTTCAAAGTCCTGAAACGATCGGATCCATTTTTTTTTCCTCTTCAGATATTGTGTGCAAAAG
66 CGGGTTCAAAGTCCTGAAACGATCGGATCCATTTTTTTTTCCTCTTCAGATATTGTGTGCAAAAG
13754174 AGTATGAGGCTCAGGTATATTTACAGGTGAAATCTAA
131 AGTATGAGGCTCAGGTATATTTACAGGTGAAATCTAA
*
13754211 CGGATCCGTGGCGCAGTGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTCACGT
1 CGGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTCACGT
13754276 CGGGTTCAAAGTCCTGAAACGATCGGATCCATTTTTTTTTCCTCTTCAGATATTGTGTGCAAAAG
66 CGGGTTCAAAGTCCTGAAACGATCGGATCCATTTTTTTTTCCTCTTCAGATATTGTGTGCAAAAG
13754341 AGTATGAGGCTCAGGTATATTTACAGGTGAAATCTAA
131 AGTATGAGGCTCAGGTATATTTACAGGTGAAATCTAA
13754378 CGGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTCACGT
1 CGGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTCACGT
* * * *
13754443 CGGGTTCAAAATCCTGATAC-AGTCGG-TTCTTTTTTTTTTGCCTCTTC
66 CGGGTTCAAAGTCCTGAAACGA-TCGGATCCATTTTTTTTT-CCTCTTC
13754490 GTATATGGCC
Statistics
Matches: 438, Mismatches: 6, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
166 12 0.03
167 426 0.97
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.31
Consensus pattern (167 bp):
CGGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTCACGT
CGGGTTCAAAGTCCTGAAACGATCGGATCCATTTTTTTTTCCTCTTCAGATATTGTGTGCAAAAG
AGTATGAGGCTCAGGTATATTTACAGGTGAAATCTAA
Found at i:13758392 original size:14 final size:14
Alignment explanation
Indices: 13758373--13758407 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
13758363 AAAAGTAAGT
13758373 CATTTTTCGGAAAC
1 CATTTTTCGGAAAC
* *
13758387 CATTTTCCGGAAGC
1 CATTTTTCGGAAAC
13758401 CATTTTT
1 CATTTTT
13758408 AGTAAAACAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (14 bp):
CATTTTTCGGAAAC
Found at i:13772510 original size:43 final size:43
Alignment explanation
Indices: 13772447--13772538 Score: 166
Period size: 43 Copynumber: 2.1 Consensus size: 43
13772437 TCAAATATGG
*
13772447 ATATGTGTCTGACATGGTTATGCTCAATTCTTATAAGTTTTCC
1 ATATATGTCTGACATGGTTATGCTCAATTCTTATAAGTTTTCC
*
13772490 ATATATGTCTGACATGGTTATGCTCAATTCTTCTAAGTTTTCC
1 ATATATGTCTGACATGGTTATGCTCAATTCTTATAAGTTTTCC
13772533 ATATAT
1 ATATAT
13772539 TTGGAAGAAC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.25, C:0.16, G:0.14, T:0.45
Consensus pattern (43 bp):
ATATATGTCTGACATGGTTATGCTCAATTCTTATAAGTTTTCC
Found at i:13773669 original size:7 final size:7
Alignment explanation
Indices: 13773659--13773683 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
13773649 TAATAATTAA
13773659 TTGAATT
1 TTGAATT
13773666 TTGAATT
1 TTGAATT
13773673 TTGAATT
1 TTGAATT
13773680 TTGA
1 TTGA
13773684 GAAGTAGAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (7 bp):
TTGAATT
Found at i:13776498 original size:13 final size:13
Alignment explanation
Indices: 13776477--13776513 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
13776467 ATATATTTTT
13776477 AAAAA-TTATATA
1 AAAAATTTATATA
13776489 AAAAATTTATATA
1 AAAAATTTATATA
*
13776502 AAAAATTAATAT
1 AAAAATTTATAT
13776514 GGGTGGGTCG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 5 0.22
13 18 0.78
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
AAAAATTTATATA
Found at i:13776637 original size:16 final size:16
Alignment explanation
Indices: 13776616--13776647 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
13776606 GCAATTAGGT
*
13776616 CTAGAATTTTGGTTGG
1 CTAGAATTTTGATTGG
13776632 CTAGAATTTTGATTGG
1 CTAGAATTTTGATTGG
13776648 ACCCGACCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.06, G:0.28, T:0.44
Consensus pattern (16 bp):
CTAGAATTTTGATTGG
Found at i:13777969 original size:25 final size:25
Alignment explanation
Indices: 13777920--13777987 Score: 90
Period size: 25 Copynumber: 2.9 Consensus size: 25
13777910 GACACACCAC
13777920 AGCTCGTATGAGCTT----ATTTAT
1 AGCTCGTATGAGCTTCCCGATTTAT
*
13777941 AGCTCGTATGAGCTTCCCGATTTGT
1 AGCTCGTATGAGCTTCCCGATTTAT
*
13777966 AGCTTGTATGAGCTTCCCGATT
1 AGCTCGTATGAGCTTCCCGATT
13777988 CACAGCTTGT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
21 15 0.37
25 26 0.63
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.38
Consensus pattern (25 bp):
AGCTCGTATGAGCTTCCCGATTTAT
Found at i:13777994 original size:25 final size:25
Alignment explanation
Indices: 13777939--13778027 Score: 106
Period size: 25 Copynumber: 3.6 Consensus size: 25
13777929 GAGCTTATTT
* *
13777939 ATAGCTCGTATGAGCTTCCCGATTT
1 ATAGCTTGTATGAGCTTCCCGATTC
*
13777964 GTAGCTTGTATGAGCTTCCCGATTC
1 ATAGCTTGTATGAGCTTCCCGATTC
* * * * *
13777989 ACAGCTTGTAAGAGCATACTGATTC
1 ATAGCTTGTATGAGCTTCCCGATTC
13778014 ATAGCTTGTATGAG
1 ATAGCTTGTATGAG
13778028 TATACATGAA
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 53 1.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (25 bp):
ATAGCTTGTATGAGCTTCCCGATTC
Found at i:13782744 original size:5 final size:5
Alignment explanation
Indices: 13782736--13782761 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
13782726 AAGTTAAGTA
13782736 TATAT TATAT TATAT TATAT TATAT T
1 TATAT TATAT TATAT TATAT TATAT T
13782762 GTAATAACTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TATAT
Found at i:13785479 original size:16 final size:16
Alignment explanation
Indices: 13785458--13785493 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
13785448 TGGTTCGCTA
*
13785458 TAATGGAATAGAGGTG
1 TAATGGAATAGAGGCG
13785474 TAATGGAATAGAGGCG
1 TAATGGAATAGAGGCG
13785490 TAAT
1 TAAT
13785494 AGTAATTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.39, C:0.03, G:0.33, T:0.25
Consensus pattern (16 bp):
TAATGGAATAGAGGCG
Found at i:13785539 original size:45 final size:44
Alignment explanation
Indices: 13785475--13785567 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 44
13785465 ATAGAGGTGT
*
13785475 AATGGAATAGAGGCGTAATAGTAATTCAAT-TGTTTGGTTGAATGA
1 AATGGAATAGAAGCGTAATAGT-ATTC-ATGTGTTTGGTTGAATGA
** * *
13785520 AATGGAATAGAATTGTAATAGTATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAAGCGTAATAGTATTCATGTGTTTGGTTGAATGA
13785564 AATG
1 AATG
13785568 ATATTGTAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
43 1 0.02
44 22 0.52
45 19 0.45
ACGTcount: A:0.33, C:0.03, G:0.27, T:0.37
Consensus pattern (44 bp):
AATGGAATAGAAGCGTAATAGTATTCATGTGTTTGGTTGAATGA
Found at i:13785847 original size:120 final size:120
Alignment explanation
Indices: 13785706--13786076 Score: 697
Period size: 120 Copynumber: 3.1 Consensus size: 120
13785696 TTAATCATAT
* *
13785706 TTTAACATAATTATTATTAAATATAATTTAATAAAAATATTTAATTTAATAAAATTCTTAATATT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
13785771 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
*
13785826 TTTAAAATAATTATTGTTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
13785891 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* *
13785946 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTGATAAAATTCTTAGTATT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
13786011 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
13786066 TTTAAAATAAT
1 TTTAAAATAAT
13786077 CTAATTTATT
Statistics
Matches: 245, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 245 1.00
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (120 bp):
TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:13785929 original size:61 final size:60
Alignment explanation
Indices: 13785741--13786061 Score: 280
Period size: 61 Copynumber: 5.3 Consensus size: 60
13785731 ATTTAATAAA
*
13785741 AATATTTAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCAT
1 AATATATAATTT-ATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCAT
* * * * * * * ** * *
13785802 AATATATAATACTATAAAA-T-ATAAT-TTAAAATAATTATTGT-TAAATATAATTTAATAAA
1 AATATATAAT-TTATAAAATTCTTAATATT-AAAT-ATTCTTATATGAATTTACTAAAATCAT
13785861 AATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCAT
1 AATATATAATTT-ATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCAT
* * * * * * ** * *
13785922 AATATATAATACTATAAAA-T-ATAAT-TTAAAATAATTATTAT-TAAATATAATTTAATAAA
1 AATATATAAT-TTATAAAATTCTTAATATT-AAAT-ATTCTTATATGAATTTACTAAAATCAT
*
13785981 AATATATAATTTGATAAAATTCTTAGTATTAAATATTCTTATATGAATTTACTAAAATCAT
1 AATATATAATTT-ATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCAT
*
13786042 AATATATAATACTATAAAAT
1 AATATATAAT-TTATAAAAT
13786062 ATAATTTAAA
Statistics
Matches: 198, Mismatches: 45, Indels: 34
0.71 0.16 0.12
Matches are distributed among these distances:
58 6 0.03
59 70 0.35
60 30 0.15
61 85 0.43
62 7 0.04
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.43
Consensus pattern (60 bp):
AATATATAATTTATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCAT
Found at i:13788393 original size:14 final size:14
Alignment explanation
Indices: 13788374--13788401 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
13788364 AGTAGAAATC
13788374 TGGAGAAAAGAAAA
1 TGGAGAAAAGAAAA
13788388 TGGAGAAAAGAAAA
1 TGGAGAAAAGAAAA
13788402 GAAATGTGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.29, T:0.07
Consensus pattern (14 bp):
TGGAGAAAAGAAAA
Found at i:13794248 original size:29 final size:27
Alignment explanation
Indices: 13794159--13794285 Score: 164
Period size: 29 Copynumber: 4.6 Consensus size: 27
13794149 TTTTGGTTAA
*
13794159 AAATTACCCGAAATACCCGAATTACCC
1 AAATTACCCGAATTACCCGAATTACCC
* * * *
13794186 GATTTACTCGAATTACCCGATTTACCC
1 AAATTACCCGAATTACCCGAATTACCC
*
13794213 AAATTACCCGAATTACCCGAAAATTACCT
1 AAATTACCCGAATTACCCG--AATTACCC
13794242 AAATTACCCGAATTACCCGAAAATTACCC
1 AAATTACCCGAATTACCCG--AATTACCC
13794271 AAATTACCCGAATTA
1 AAATTACCCGAATTA
13794286 AATCACTACA
Statistics
Matches: 87, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
27 38 0.44
29 49 0.56
ACGTcount: A:0.39, C:0.29, G:0.08, T:0.24
Consensus pattern (27 bp):
AAATTACCCGAATTACCCGAATTACCC
Found at i:13794284 original size:9 final size:9
Alignment explanation
Indices: 13794160--13794285 Score: 144
Period size: 9 Copynumber: 13.6 Consensus size: 9
13794150 TTTGGTTAAA
13794160 AATTACCCG
1 AATTACCCG
*
13794169 AAATACCCG
1 AATTACCCG
13794178 AATTACCCG
1 AATTACCCG
* *
13794187 ATTTACTCG
1 AATTACCCG
13794196 AATTACCCG
1 AATTACCCG
* *
13794205 ATTTACCCA
1 AATTACCCG
13794214 AATTACCCG
1 AATTACCCG
13794223 AATTACCCG
1 AATTACCCG
**
13794232 AAAATTACCTA
1 --AATTACCCG
13794243 AATTACCCG
1 AATTACCCG
13794252 AATTACCCG
1 AATTACCCG
*
13794261 AAAATTACCCA
1 --AATTACCCG
13794272 AATTACCCG
1 AATTACCCG
13794281 AATTA
1 AATTA
13794286 AATCACTACA
Statistics
Matches: 97, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
9 82 0.85
11 15 0.15
ACGTcount: A:0.38, C:0.29, G:0.08, T:0.25
Consensus pattern (9 bp):
AATTACCCG
Found at i:13794336 original size:20 final size:20
Alignment explanation
Indices: 13794311--13794411 Score: 79
Period size: 20 Copynumber: 5.3 Consensus size: 20
13794301 AAAAAAGCAT
13794311 TACATAAATCTTTAAATCAC
1 TACATAAATCTTTAAATCAC
* * *
13794331 TACAT-AA--TTAAAAGCAT
1 TACATAAATCTTTAAATCAC
*
13794348 TACATAAATCTTTAAATAAC
1 TACATAAATCTTTAAATCAC
* * *
13794368 TACAT-AA--TTAAAATTAT
1 TACATAAATCTTTAAATCAC
* *
13794385 TACATAAGTCTTTGAATCAC
1 TACATAAATCTTTAAATCAC
13794405 TACATAA
1 TACATAA
13794412 TTAAAAACAT
Statistics
Matches: 60, Mismatches: 15, Indels: 12
0.69 0.17 0.14
Matches are distributed among these distances:
17 24 0.40
18 3 0.05
19 4 0.07
20 29 0.48
ACGTcount: A:0.48, C:0.15, G:0.03, T:0.35
Consensus pattern (20 bp):
TACATAAATCTTTAAATCAC
Found at i:13794353 original size:37 final size:37
Alignment explanation
Indices: 13794283--13794433 Score: 221
Period size: 37 Copynumber: 4.0 Consensus size: 37
13794273 ATTACCCGAA
13794283 TTAAATCACTACATAATTAAAAAAGCATTACATAAATCT
1 TTAAATCACTACATAATT--AAAAGCATTACATAAATCT
13794322 TTAAATCACTACATAATTAAAAGCATTACATAAATCT
1 TTAAATCACTACATAATTAAAAGCATTACATAAATCT
* ** *
13794359 TTAAATAACTACATAATTAAAATTATTACATAAGTCT
1 TTAAATCACTACATAATTAAAAGCATTACATAAATCT
* * *
13794396 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTAAATCACTACATAATTAAAAGCATTACATAAATCT
13794433 T
1 T
13794434 GAATTAACAC
Statistics
Matches: 104, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
37 86 0.83
39 18 0.17
ACGTcount: A:0.48, C:0.15, G:0.03, T:0.34
Consensus pattern (37 bp):
TTAAATCACTACATAATTAAAAGCATTACATAAATCT
Found at i:13794388 original size:17 final size:17
Alignment explanation
Indices: 13794331--13794391 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
13794321 TTTAAATCAC
**
13794331 TACATAATTAAAAGCAT
1 TACATAATTAAAATAAT
* *
13794348 TACATAAATCTTTAAATAAC
1 TACAT-AA--TTAAAATAAT
*
13794368 TACATAATTAAAATTAT
1 TACATAATTAAAATAAT
13794385 TACATAA
1 TACATAA
13794392 GTCTTTGAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
17 19 0.56
18 2 0.06
19 2 0.06
20 11 0.32
ACGTcount: A:0.52, C:0.11, G:0.02, T:0.34
Consensus pattern (17 bp):
TACATAATTAAAATAAT
Found at i:13798293 original size:9 final size:9
Alignment explanation
Indices: 13798279--13798304 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
13798269 GAGTGTGAAA
13798279 GTGAAATTT
1 GTGAAATTT
13798288 GTGAAATTT
1 GTGAAATTT
13798297 GTGAAATT
1 GTGAAATT
13798305 AGGGAGGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (9 bp):
GTGAAATTT
Found at i:13802841 original size:14 final size:14
Alignment explanation
Indices: 13802822--13802849 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
13802812 AGTAGAAATC
13802822 TGGAGAAAAGAAAA
1 TGGAGAAAAGAAAA
13802836 TGGAGAAAAGAAAA
1 TGGAGAAAAGAAAA
13802850 GAAATGTGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.29, T:0.07
Consensus pattern (14 bp):
TGGAGAAAAGAAAA
Found at i:13810810 original size:62 final size:62
Alignment explanation
Indices: 13810713--13810829 Score: 234
Period size: 62 Copynumber: 1.9 Consensus size: 62
13810703 CACATGCCCA
13810713 ATACTAACACATATCCTGAGTAATGCAGGTACCTATGTCCACAAATTGAGGCGTCACGAAGT
1 ATACTAACACATATCCTGAGTAATGCAGGTACCTATGTCCACAAATTGAGGCGTCACGAAGT
13810775 ATACTAACACATATCCTGAGTAATGCAGGTACCTATGTCCACAAATTGAGGCGTC
1 ATACTAACACATATCCTGAGTAATGCAGGTACCTATGTCCACAAATTGAGGCGTC
13810830 CCCTTCGTGA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (62 bp):
ATACTAACACATATCCTGAGTAATGCAGGTACCTATGTCCACAAATTGAGGCGTCACGAAGT
Found at i:13816780 original size:208 final size:207
Alignment explanation
Indices: 13816367--13817385 Score: 1461
Period size: 206 Copynumber: 4.9 Consensus size: 207
13816357 TATCTCTTGT
* * * * *
13816367 TTTTTTTAGCTATTTAGACTTTCCACTCAACCTAATAATTTACCACATCATTTTTTGTATCAAAC
1 TTTTTTTAGCTATTTAGATTTTCCACTCAACCTAATAATTTACCACATCAATTTTGGTATCAGAG
* * * *
13816432 CCTAATCAGATCTTAGGACATCTATTGGAAATCACTTTTAAGCTATGACTGGACATACAAGAGGT
66 CCTAATTAGATCTTAGGACTTATATTGGAAATCACTTTTAAGCCATGACTGGACATACAAGAGGT
* *
13816497 CAAGGAAAAGAAAATCAAAGCCAACAAATAGAGTTGTCAAAGATGAGGCCCATGATAGAAGAATT
131 CAAGGAAGAGAAAATCAAAGCCAACAAATAGAGTTGTCAAAGATGAGGCGCATGATAGAAGAATT
**
13816562 GTTGCATTTTAA
196 GTCACATTTTAA
* * * *
13816574 TTTTTTTAGCTATTTAGATTTTCCACTCAACCAAATAATTTACCACATCAATTGTGATATCAAAG
1 TTTTTTTAGCTATTTAGATTTTCCACTCAACCTAATAATTTACCACATCAATTTTGGTATCAGAG
** * *
13816639 CCTAATTAGAT-TCTAAAACTTATATTGGAAATCGCTTTTAAGCCATGACTGAACATACAAGAGG
66 CCTAATTAGATCT-TAGGACTTATATTGGAAATCACTTTTAAGCCATGACTGGACATACAAGAGG
* * * **
13816703 TCAAAGGAAGAGAAAATCAAAACCAACAAACAGAGTTGTCAGAGATGAGATGCATGATAGAAGAA
130 TC-AAGGAAGAGAAAATCAAAGCCAACAAATAGAGTTGTCAAAGATGAGGCGCATGATAGAAGAA
*
13816768 TTGTCCCATTTTAA
194 TTGTCACATTTTAA
*
13816782 TTTTTTTAGCTATTTAGATTTTCCACTCAACCTAATAATTTACCACATCATTTTTGGTATCAGAG
1 TTTTTTTAGCTATTTAGATTTTCCACTCAACCTAATAATTTACCACATCAATTTTGGTATCAGAG
* * *
13816847 CATAATTAGATCTTAGGACTTATATTGGAAATCACTTTTAAGCCAGGACTAGACATACAAGAGGT
66 CCTAATTAGATCTTAGGACTTATATTGGAAATCACTTTTAAGCCATGACTGGACATACAAGAGGT
* * * * *
13816912 AAAGTAAGAGAAAATCAAAGCCAAAAAATAGAGTTGTCAGAGATGAGGCGTATGATAGAAGAATT
131 CAAGGAAGAGAAAATCAAAGCCAACAAATAGAGTTGTCAAAGATGAGGCGCATGATAGAAGAATT
13816977 GTCACATTTTAA
196 GTCACATTTTAA
* *
13816989 -TTTTTTAACTATTTAGATTTTCCACTCAACTTAATAATTTA-CAGCATCAATTTTGGTATCAGA
1 TTTTTTTAGCTATTTAGATTTTCCACTCAACCTAATAATTTACCA-CATCAATTTTGGTATCAGA
* * * *
13817052 GTCTAATTAGATCTTATGACTTATATTGAAAATCACTTTTAAGCCATGATTGGACATACAAGAGG
65 GCCTAATTAGATCTTAGGACTTATATTGGAAATCACTTTTAAGCCATGACTGGACATACAAGAGG
*
13817117 TCAAGGAAGAGAAAATCAAAGCCAACAAATAGAGTTGTCAAAGATGAGGC-TATGATAGAAGAAT
130 TCAAGGAAGAGAAAATCAAAGCCAACAAATAGAGTTGTCAAAGATGAGGCGCATGATAGAAGAAT
*
13817181 TGACACATTTTAA
195 TGTCACATTTTAA
* * *
13817194 TTTTTTTAGCTATTTAGGTTTTTCACTCAACCAAATAATTTACCACATCAATTTTGGTATCAGAG
1 TTTTTTTAGCTATTTAGATTTTCCACTCAACCTAATAATTTACCACATCAATTTTGGTATCAGAG
* * * * * * *
13817259 CTTAATTAGATCCTATGACTTATATTAGAAATCACTTTTAAGCCATGAATGGGCATATAAGAGGT
66 CCTAATTAGATCTTAGGACTTATATTGGAAATCACTTTTAAGCCATGACTGGACATACAAGAGGT
* * * *
13817324 CAAGAAAGAGAAAATCAAAGCCAAGAAATAGAGTTGTCAAAGATGAGGCGTATGATTGAAGA
131 CAAGGAAGAGAAAATCAAAGCCAACAAATAGAGTTGTCAAAGATGAGGCGCATGATAGAAGA
13817386 TTTATCGCAA
Statistics
Matches: 729, Mismatches: 76, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
205 28 0.04
206 322 0.44
207 195 0.27
208 183 0.25
209 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (207 bp):
TTTTTTTAGCTATTTAGATTTTCCACTCAACCTAATAATTTACCACATCAATTTTGGTATCAGAG
CCTAATTAGATCTTAGGACTTATATTGGAAATCACTTTTAAGCCATGACTGGACATACAAGAGGT
CAAGGAAGAGAAAATCAAAGCCAACAAATAGAGTTGTCAAAGATGAGGCGCATGATAGAAGAATT
GTCACATTTTAA
Found at i:13821550 original size:20 final size:19
Alignment explanation
Indices: 13821525--13821585 Score: 68
Period size: 20 Copynumber: 3.1 Consensus size: 19
13821515 TAAATTTTAT
13821525 ATTTTTAAAAAATATATAAA
1 ATTTTTAAAAAAT-TATAAA
*
13821545 ATTTTTAAAAAATTTTAAAA
1 ATTTTTAAAAAATTAT-AAA
* *
13821565 ATTTATAAAAATTGTATAAA
1 ATTTTTAAAAAAT-TATAAA
13821585 A
1 A
13821586 AGTTAAGATT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
19 2 0.06
20 31 0.89
21 2 0.06
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (19 bp):
ATTTTTAAAAAATTATAAA
Found at i:13821555 original size:10 final size:10
Alignment explanation
Indices: 13821542--13821577 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
13821532 AAAAATATAT
13821542 AAAATTTTTA
1 AAAATTTTTA
*
13821552 AAAAATTTTA
1 AAAATTTTTA
*
13821562 AAAATTTATA
1 AAAATTTTTA
13821572 AAAATT
1 AAAATT
13821578 GTATAAAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (10 bp):
AAAATTTTTA
Found at i:13821582 original size:11 final size:10
Alignment explanation
Indices: 13821528--13821586 Score: 61
Period size: 9 Copynumber: 6.0 Consensus size: 10
13821518 ATTTTATATT
13821528 TTTA-AAAAA
1 TTTATAAAAA
*
13821537 TATAT-AAAA
1 TTTATAAAAA
*
13821546 TTTTTAAAAAA
1 TTTAT-AAAAA
13821557 TTT-TAAAAA
1 TTTATAAAAA
13821566 TTTATAAAAA
1 TTTATAAAAA
13821576 TTGTATAAAAA
1 TT-TATAAAAA
13821587 GTTAAGATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
9 18 0.43
10 9 0.21
11 15 0.36
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (10 bp):
TTTATAAAAA
Found at i:13821585 original size:10 final size:10
Alignment explanation
Indices: 13821496--13821585 Score: 50
Period size: 10 Copynumber: 9.4 Consensus size: 10
13821486 TTTAAAATTC
13821496 AAAATATTTAT
1 AAAAT-TTTAT
*
13821507 AAAAATTT-T
1 AAAATTTTAT
13821516 -AAATTTTAT
1 AAAATTTTAT
*
13821525 --ATTTTTA-
1 AAAATTTTAT
* *
13821532 AAAAATATAT
1 AAAATTTTAT
*
13821542 AAAATTTTTAA
1 AAAA-TTTTAT
13821553 AAAATTTTA-
1 AAAATTTTAT
13821562 AAAA-TTTAT
1 AAAATTTTAT
*
13821571 AAAAATTGTAT
1 -AAAATTTTAT
13821582 AAAA
1 AAAA
13821586 AGTTAAGATT
Statistics
Matches: 61, Mismatches: 10, Indels: 17
0.69 0.11 0.19
Matches are distributed among these distances:
8 16 0.26
9 10 0.16
10 20 0.33
11 15 0.25
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (10 bp):
AAAATTTTAT
Found at i:13821591 original size:29 final size:29
Alignment explanation
Indices: 13821532--13821604 Score: 69
Period size: 29 Copynumber: 2.6 Consensus size: 29
13821522 TATATTTTTA
* * * **
13821532 AAAAATATATAAAATTTTTAAAAAATTTT
1 AAAAATTTATAAAAATTGTAAAAAAAGTT
*
13821561 AAAAATTTATAAAAATTGTATAAAAAGTT
1 AAAAATTTATAAAAATTGTAAAAAAAGTT
*
13821590 -AAGATTT-TAAAAATT
1 AAAAATTTATAAAAATT
13821605 TTCTAAAATA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
27 8 0.22
28 6 0.16
29 23 0.62
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (29 bp):
AAAAATTTATAAAAATTGTAAAAAAAGTT
Found at i:13822939 original size:18 final size:19
Alignment explanation
Indices: 13822897--13822954 Score: 66
Period size: 18 Copynumber: 3.1 Consensus size: 19
13822887 TATTTTTAAT
*
13822897 TAATTTCTAATAATTTTGTTA
1 TAATTT-TAATGATTTT-TTA
*
13822918 -AATTTTAAT-TTTTTTTA
1 TAATTTTAATGATTTTTTA
13822935 TAATTTTAATGATTTTTTA
1 TAATTTTAATGATTTTTTA
13822954 T
1 T
13822955 GTTTTTTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
17 3 0.09
18 13 0.39
19 12 0.36
20 5 0.15
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (19 bp):
TAATTTTAATGATTTTTTA
Found at i:13824569 original size:7 final size:7
Alignment explanation
Indices: 13824559--13824588 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
13824549 TAGGGTTCGT
13824559 GTTCAAG
1 GTTCAAG
*
13824566 GTTCGAG
1 GTTCAAG
13824573 GTTCAAG
1 GTTCAAG
13824580 GTTCAAG
1 GTTCAAG
13824587 GT
1 GT
13824589 AAAATAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.23, C:0.13, G:0.33, T:0.30
Consensus pattern (7 bp):
GTTCAAG
Found at i:13824659 original size:32 final size:32
Alignment explanation
Indices: 13824614--13824682 Score: 120
Period size: 32 Copynumber: 2.2 Consensus size: 32
13824604 ATTATGTGTC
*
13824614 AATGACATGGAAAAAATTGCACAAAAGTTACT
1 AATGTCATGGAAAAAATTGCACAAAAGTTACT
*
13824646 AATGTCATTGAAAAAATTGCACAAAAGTTACT
1 AATGTCATGGAAAAAATTGCACAAAAGTTACT
13824678 AATGT
1 AATGT
13824683 TTTTCTTAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.48, C:0.12, G:0.14, T:0.26
Consensus pattern (32 bp):
AATGTCATGGAAAAAATTGCACAAAAGTTACT
Found at i:13827262 original size:267 final size:266
Alignment explanation
Indices: 13826733--13827239 Score: 720
Period size: 267 Copynumber: 1.9 Consensus size: 266
13826723 TCTTTTGCTT
* * * * *
13826733 ATTTTATATTTTATTCAACCTCCAATTCATTTTTCACCATTTATGGTGATTTTTCAAAGTTTCCC
1 ATTTCATATATTATTCAACCTCCAATTCATTTTCCAACATTTATGGTGATTTTTCAAAGTTGCCC
*
13826798 AACTGCTGTCATTCAAAACAGTTTTGCATTCAAATTGTCTCTTTTTGTATTTTTGATTTTCCTCC
66 AACTGCTGTCACTCAAAACAGTTTTGCATTCAAATTGTCTCTTTTTGTATTTTTGATTTTCCTCC
* * *
13826863 CATCTTATACATGGGTTGATTAAGTACCAACCCGATATTCCTCCCATAAACTTGTCCACCACATA
131 CATCTTATACATGGGTCGATTAAGTACAAACCCAATATTCCTCCCATAAACTTGTCCACCACATA
** * ***
13826928 TATGAACATTCACCTTCCTAATTTACTGCTTGCTCTATTTCTTTCATATGAAAATAGACTCATTC
196 TA-GAACATTCACCTTCCTAATTTACTGCTTGAACTATCTCTGGAATATGAAAATAGACTCATTC
13826993 AGCTTAA
260 AGCTTAA
* * *
13827000 ATTTCATATATTATTTAACCTCTAATTCATTTTCCAACATTTATGGTGATTTTTCATAGTTGCCC
1 ATTTCATATATTATTCAACCTCCAATTCATTTTCCAACATTTATGGTGATTTTTCAAAGTTGCCC
** * * *
13827065 AACTGCTGTTGCTCAAAACAGTTTTGTATTTAAATTGTTTC-TTTTGTATTTTTGATATTTCCTC
66 AACTGCTGTCACTCAAAACAGTTTTGCATTCAAATTGTCTCTTTTTGTATTTTTGAT-TTTCCTC
13827129 CCATCTTATACATGGGTCGATTAAGTATCAAACCCAATATTCCTCCCATAAACTTGTCCACCACA
130 CCATCTTATACATGGGTCGATTAAGTA-CAAACCCAATATTCCTCCCATAAACTTGTCCACCACA
*
13827194 TATA-AATATTCACCTTCCTAATTTACTTG-TTGAAC-A-CTC-GGAATAT
194 TATAGAACATTCACCTTCCTAATTTAC-TGCTTGAACTATCTCTGGAATAT
13827240 TAACCGTTAT
Statistics
Matches: 213, Mismatches: 24, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
263 4 0.02
264 2 0.01
265 1 0.00
266 40 0.19
267 127 0.60
268 39 0.18
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.42
Consensus pattern (266 bp):
ATTTCATATATTATTCAACCTCCAATTCATTTTCCAACATTTATGGTGATTTTTCAAAGTTGCCC
AACTGCTGTCACTCAAAACAGTTTTGCATTCAAATTGTCTCTTTTTGTATTTTTGATTTTCCTCC
CATCTTATACATGGGTCGATTAAGTACAAACCCAATATTCCTCCCATAAACTTGTCCACCACATA
TAGAACATTCACCTTCCTAATTTACTGCTTGAACTATCTCTGGAATATGAAAATAGACTCATTCA
GCTTAA
Found at i:13827399 original size:34 final size:32
Alignment explanation
Indices: 13827360--13827458 Score: 118
Period size: 27 Copynumber: 3.2 Consensus size: 32
13827350 AAGATGCGGT
13827360 GGAATCAGCACTTAGCAACCACCAAATGGGTCGG
1 GGAATCAGCACTTAGCAACCACC-AATGGGT-GG
*
13827394 GGAATCAGCACTTAGCAACC-CC---GAG-GG
1 GGAATCAGCACTTAGCAACCACCAATGGGTGG
*
13827421 GGAATCAGCACTTAGCAACCACCAATAGGTAGG
1 GGAATCAGCACTTAGCAACCACCAATGGGT-GG
13827454 GGAAT
1 GGAAT
13827459 TCACATTTAT
Statistics
Matches: 56, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
27 22 0.39
28 2 0.04
29 2 0.04
31 1 0.02
33 9 0.16
34 20 0.36
ACGTcount: A:0.33, C:0.25, G:0.27, T:0.14
Consensus pattern (32 bp):
GGAATCAGCACTTAGCAACCACCAATGGGTGG
Found at i:13827525 original size:30 final size:30
Alignment explanation
Indices: 13827491--13827548 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
13827481 CCACCCAACT
13827491 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * * *
13827521 TTTTGCATAATTATACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
13827549 GCTCAGAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:13830207 original size:59 final size:58
Alignment explanation
Indices: 13830135--13830255 Score: 152
Period size: 58 Copynumber: 2.1 Consensus size: 58
13830125 AGAAATGGTG
* *
13830135 AAAATGGAGAAATGTGAAACATTCGGAAATGATTATAGTTTTCTCCAAAATGAAAATGA
1 AAAATGGAGAAATG-GAAACATTCAGAAATGAATATAGTTTTCTCCAAAATGAAAATGA
* ** * * * *
13830194 AAAATGGATAAATGGAATTATTTAGAAATGAATGTGGTTTTCTCTAAAATGAAAATGA
1 AAAATGGAGAAATGGAAACATTCAGAAATGAATATAGTTTTCTCCAAAATGAAAATGA
13830252 AAAA
1 AAAA
13830256 AAAAAGAATG
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
58 40 0.75
59 13 0.25
ACGTcount: A:0.47, C:0.06, G:0.18, T:0.29
Consensus pattern (58 bp):
AAAATGGAGAAATGGAAACATTCAGAAATGAATATAGTTTTCTCCAAAATGAAAATGA
Found at i:13831700 original size:21 final size:21
Alignment explanation
Indices: 13831674--13831723 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
13831664 CTACAACTTA
*
13831674 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCGGCAGCGAGAG
*
13831695 AAGCAGAGGCTGCAGCGAGAG
1 AAGCAGAGGCGGCAGCGAGAG
13831716 AAGCAGAG
1 AAGCAGAG
13831724 CAGAGCAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.34, C:0.18, G:0.46, T:0.02
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCGAGAG
Found at i:13831906 original size:32 final size:32
Alignment explanation
Indices: 13831868--13831937 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 32
13831858 ATATGAATTC
* * *
13831868 ACTTTT-ATTTATTAATATTAATATTATTTTATT
1 ACTTTTAATTTA-AAATATT-ATATAAATTTATT
13831901 -CTTTTAATTTAAAATATTATATAAATTTATT
1 ACTTTTAATTTAAAATATTATATAAATTTATT
13831932 ACTTTT
1 ACTTTT
13831938 GGCTGGTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
31 11 0.34
32 16 0.50
33 5 0.16
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (32 bp):
ACTTTTAATTTAAAATATTATATAAATTTATT
Found at i:13835295 original size:15 final size:15
Alignment explanation
Indices: 13835275--13835331 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 15
13835265 ATTCGGTATT
13835275 AATATTTTAATAATA
1 AATATTTTAATAATA
*
13835290 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
13835309 AATATATTAATAATA
1 AATATTTTAATAATA
13835324 AATATTTT
1 AATATTTT
13835332 GTAGTATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 17 0.50
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.29
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:13835340 original size:31 final size:32
Alignment explanation
Indices: 13835270--13835344 Score: 82
Period size: 34 Copynumber: 2.3 Consensus size: 32
13835260 AAAATATTCG
* *
13835270 GTATTAATATTTTAATAATAAATATTTATTACAA
1 GTATAAATATATTAATAATAAATATTTATT--AA
*
13835304 TTATAAATATATTAATAATAAATATTT-TGT-A
1 GTATAAATATATTAATAATAAATATTTAT-TAA
13835335 GTATAAATAT
1 GTATAAATAT
13835345 TAAAATATGC
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
31 10 0.28
33 1 0.03
34 25 0.69
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.47
Consensus pattern (32 bp):
GTATAAATATATTAATAATAAATATTTATTAA
Found at i:13835732 original size:32 final size:33
Alignment explanation
Indices: 13835694--13835765 Score: 87
Period size: 33 Copynumber: 2.2 Consensus size: 33
13835684 AACTTTTATG
13835694 AAATATTTT-TA-AGAAATC-TACCAAACAACAGA
1 AAATATTTTATACAG-AATCAT-CCAAACAACAGA
* *
13835726 AAATATTTTATACAGATTCATCCAAACACCAGA
1 AAATATTTTATACAGAATCATCCAAACAACAGA
13835759 AAATATT
1 AAATATT
13835766 AGCTTTTCCA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
32 9 0.26
33 23 0.66
34 3 0.09
ACGTcount: A:0.50, C:0.17, G:0.06, T:0.28
Consensus pattern (33 bp):
AAATATTTTATACAGAATCATCCAAACAACAGA
Found at i:13837403 original size:36 final size:37
Alignment explanation
Indices: 13837363--13837445 Score: 132
Period size: 36 Copynumber: 2.2 Consensus size: 37
13837353 TAAATAACTA
13837363 TAATATCTCAACATCCCTTCCATCCACCTCCTCTAT-
1 TAATATCTCAACATCCCTTCCATCCACCTCCTCTATC
* *
13837399 TAATATCTCAACATCGCTTCCATCGACCTCCTCTATC
1 TAATATCTCAACATCCCTTCCATCCACCTCCTCTATC
13837436 TCAATATCTC
1 T-AATATCTC
13837446 TTCCGTCAAC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
36 34 0.79
37 1 0.02
38 8 0.19
ACGTcount: A:0.25, C:0.39, G:0.02, T:0.34
Consensus pattern (37 bp):
TAATATCTCAACATCCCTTCCATCCACCTCCTCTATC
Found at i:13837436 original size:30 final size:31
Alignment explanation
Indices: 13837365--13837458 Score: 82
Period size: 36 Copynumber: 2.9 Consensus size: 31
13837355 AATAACTATA
*
13837365 ATATCTCAACATCCCTTCCATCCACCTCCTC
1 ATATCTCAACATCCCTTCCATCAACCTCCTC
* *
13837396 TATTAATATCTCAACATCGCTTCCATCGACCTCCTC
1 -----ATATCTCAACATCCCTTCCATCAACCTCCTC
* * *
13837432 -TATCTCAATATCTCTTCCGTCAACCTC
1 ATATCTCAACATCCCTTCCATCAACCTC
13837459 ATCTGGTATG
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
30 23 0.44
36 29 0.56
ACGTcount: A:0.23, C:0.40, G:0.03, T:0.33
Consensus pattern (31 bp):
ATATCTCAACATCCCTTCCATCAACCTCCTC
Found at i:13839543 original size:8 final size:8
Alignment explanation
Indices: 13839532--13839561 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
13839522 TTAATTTTTA
13839532 AAAAATTT
1 AAAAATTT
13839540 AAAAATTT
1 AAAAATTT
*
13839548 AAAAATCT
1 AAAAATTT
13839556 AAAAAT
1 AAAAAT
13839562 ATTTTTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (8 bp):
AAAAATTT
Found at i:13839604 original size:21 final size:22
Alignment explanation
Indices: 13839570--13839615 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
13839560 ATATTTTTAT
* *
13839570 ATTTTCATACATTTT-TAAATA
1 ATTTTCATAAATTTTAAAAATA
*
13839591 ATTTTTATAAATTTTAAAAATA
1 ATTTTCATAAATTTTAAAAATA
13839613 ATT
1 ATT
13839616 AATTATTAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.52
Consensus pattern (22 bp):
ATTTTCATAAATTTTAAAAATA
Found at i:13845204 original size:41 final size:39
Alignment explanation
Indices: 13845142--13845224 Score: 103
Period size: 41 Copynumber: 2.1 Consensus size: 39
13845132 AAGATTCAAG
* *
13845142 GTTCGGGTTCGGGTTTGGGGTTTAAGATTTAGGTTTAGA
1 GTTCGGGTTCGAGTTTGGGGTTTAAGATTTAGGTTTAAA
* * *
13845181 GTTCGGGGTTACGAGTTTGGGGTTTGAGGTTTTGGTTTAAA
1 GTTC-GGGTT-CGAGTTTGGGGTTTAAGATTTAGGTTTAAA
13845222 GTT
1 GTT
13845225 TAAGGGTTTG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 4 0.11
40 5 0.14
41 28 0.76
ACGTcount: A:0.14, C:0.05, G:0.39, T:0.42
Consensus pattern (39 bp):
GTTCGGGTTCGAGTTTGGGGTTTAAGATTTAGGTTTAAA
Found at i:13845549 original size:6 final size:6
Alignment explanation
Indices: 13845538--13845568 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
13845528 TTTTAGTATC
13845538 ATCCTA ATCCTA ATCCTA ATCCTA ATCCTA A
1 ATCCTA ATCCTA ATCCTA ATCCTA ATCCTA A
13845569 AGTAAATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.35, C:0.32, G:0.00, T:0.32
Consensus pattern (6 bp):
ATCCTA
Found at i:13846510 original size:14 final size:13
Alignment explanation
Indices: 13846474--13846503 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
13846464 ATATTTTTTT
13846474 AAAAAA-AATATA
1 AAAAAATAATATA
13846486 AAAAAATAATATA
1 AAAAAATAATATA
13846499 AAAAA
1 AAAAA
13846504 GTTAATACGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (13 bp):
AAAAAATAATATA
Found at i:13854431 original size:23 final size:23
Alignment explanation
Indices: 13854401--13854448 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
13854391 TAATTTATGT
13854401 TACTGTGTACAGGTTCTTCATGG
1 TACTGTGTACAGGTTCTTCATGG
13854424 TACTGTGTACAGGTTCTTCATGG
1 TACTGTGTACAGGTTCTTCATGG
13854447 TA
1 TA
13854449 AGCAAAAGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.19, C:0.17, G:0.25, T:0.40
Consensus pattern (23 bp):
TACTGTGTACAGGTTCTTCATGG
Found at i:13857562 original size:82 final size:81
Alignment explanation
Indices: 13857417--13857572 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
13857407 GCATCATTTG
* * *
13857417 CCTTGCATGTGATTGATCAAATGTAAATAGATAATCAGAATGCTAAAAAGGATATGAATTTTGAA
1 CCTTGCATGTGATTAATCAAATATAAATAGATAATCAGAACGCTAAAAAGGATATGAATTTTGAA
13857482 CTTAGAAAACAAATTA
66 CTTAGAAAACAAATTA
* * *** *
13857498 CCTTGCATGTGTTTAAT-AGAATATAAATAGATTAATCTGAACGCTATCTAGGATGTGAATTTTG
1 CCTTGCATGTGATTAATCA-AATATAAATAGA-TAATCAGAACGCTAAAAAGGATATGAATTTTG
*
13857562 AATTTAGAAAA
64 AACTTAGAAAA
13857573 ATTAGGACTT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
80 1 0.02
81 26 0.41
82 36 0.57
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.33
Consensus pattern (81 bp):
CCTTGCATGTGATTAATCAAATATAAATAGATAATCAGAACGCTAAAAAGGATATGAATTTTGAA
CTTAGAAAACAAATTA
Found at i:13865146 original size:209 final size:209
Alignment explanation
Indices: 13864786--13865203 Score: 836
Period size: 209 Copynumber: 2.0 Consensus size: 209
13864776 GGGTGCTTTA
13864786 TCAGCTTCATTGTTGCTATTTCCCGCTTAATCTGCAAAAACAAGCAGAAAAGAATTGACATATAG
1 TCAGCTTCATTGTTGCTATTTCCCGCTTAATCTGCAAAAACAAGCAGAAAAGAATTGACATATAG
13864851 ATAGAATTTGGTGGGATGATTCCCCTTCAACAAAGAAAAGAAGGGAGTTAGAAAAAGAAACCTGT
66 ATAGAATTTGGTGGGATGATTCCCCTTCAACAAAGAAAAGAAGGGAGTTAGAAAAAGAAACCTGT
13864916 TCAGCCATTTTGTGCTTGAGAACCTTGTCTTTATCAAGGATCTTAAGTGCCACTGGTTCCCCAGT
131 TCAGCCATTTTGTGCTTGAGAACCTTGTCTTTATCAAGGATCTTAAGTGCCACTGGTTCCCCAGT
13864981 CTCAGAATTTCTTG
196 CTCAGAATTTCTTG
13864995 TCAGCTTCATTGTTGCTATTTCCCGCTTAATCTGCAAAAACAAGCAGAAAAGAATTGACATATAG
1 TCAGCTTCATTGTTGCTATTTCCCGCTTAATCTGCAAAAACAAGCAGAAAAGAATTGACATATAG
13865060 ATAGAATTTGGTGGGATGATTCCCCTTCAACAAAGAAAAGAAGGGAGTTAGAAAAAGAAACCTGT
66 ATAGAATTTGGTGGGATGATTCCCCTTCAACAAAGAAAAGAAGGGAGTTAGAAAAAGAAACCTGT
13865125 TCAGCCATTTTGTGCTTGAGAACCTTGTCTTTATCAAGGATCTTAAGTGCCACTGGTTCCCCAGT
131 TCAGCCATTTTGTGCTTGAGAACCTTGTCTTTATCAAGGATCTTAAGTGCCACTGGTTCCCCAGT
13865190 CTCAGAATTTCTTG
196 CTCAGAATTTCTTG
13865204 CGAACTTCAC
Statistics
Matches: 209, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
209 209 1.00
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.30
Consensus pattern (209 bp):
TCAGCTTCATTGTTGCTATTTCCCGCTTAATCTGCAAAAACAAGCAGAAAAGAATTGACATATAG
ATAGAATTTGGTGGGATGATTCCCCTTCAACAAAGAAAAGAAGGGAGTTAGAAAAAGAAACCTGT
TCAGCCATTTTGTGCTTGAGAACCTTGTCTTTATCAAGGATCTTAAGTGCCACTGGTTCCCCAGT
CTCAGAATTTCTTG
Found at i:13866598 original size:21 final size:19
Alignment explanation
Indices: 13866565--13866608 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
13866555 TTTTAAAAAA
* *
13866565 TAAAAATACATAAATATTTT
1 TAAAAATAAAT-AATAATTT
13866585 TAAAAATATAATAATAATTT
1 TAAAAATA-AATAATAATTT
13866605 TAAA
1 TAAA
13866609 TTTTGTATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (19 bp):
TAAAAATAAATAATAATTT
Found at i:13867075 original size:6 final size:6
Alignment explanation
Indices: 13867076--13867100 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
13867066 TTATATTTAT
13867076 TTAATA TTAATA TTAATA TTAATA T
1 TTAATA TTAATA TTAATA TTAATA T
13867101 AAAATTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TTAATA
Found at i:13867075 original size:24 final size:24
Alignment explanation
Indices: 13867043--13867088 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
13867033 TGGGGGATCT
13867043 TTATTTTATTTAATA-TAATATAA
1 TTATTTTATTTAATATTAATATAA
13867066 TTATATTTATTTAATATTAATAT
1 TTAT-TTTATTTAATATTAATAT
13867089 TAATATTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 4 0.19
24 11 0.52
25 6 0.29
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (24 bp):
TTATTTTATTTAATATTAATATAA
Found at i:13885930 original size:19 final size:20
Alignment explanation
Indices: 13885886--13885929 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
13885876 ATTTTTTAAT
* *
13885886 TATTTAAATTGAATTTTATA
1 TATTTTAATTGAATTATATA
13885906 TATTTTAATT-AATTATATA
1 TATTTTAATTGAATTATATA
13885925 T-TTTT
1 TATTTT
13885930 TGGTGTATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 4 0.18
19 9 0.41
20 9 0.41
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (20 bp):
TATTTTAATTGAATTATATA
Found at i:13889317 original size:15 final size:16
Alignment explanation
Indices: 13889297--13889331 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
13889287 TTAATTATCC
13889297 TTAAGACTTAATTAA-
1 TTAAGACTTAATTAAG
*
13889312 TTAAGAGTTAATTAAG
1 TTAAGACTTAATTAAG
13889328 TTAA
1 TTAA
13889332 TTTTGATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.46, C:0.03, G:0.11, T:0.40
Consensus pattern (16 bp):
TTAAGACTTAATTAAG
Found at i:13892359 original size:44 final size:45
Alignment explanation
Indices: 13892277--13892369 Score: 109
Period size: 44 Copynumber: 2.1 Consensus size: 45
13892267 AAATGAATAG
* * *
13892277 AAATAGAGAAATGGAAAACATTCAGAAATGATTATGATTTT-TCCA
1 AAATAGAGAAATGGAAAACATTCAAAAATAAATATGATTTTCT-CA
* * *
13892322 AAATGGAGAAATGG-AATCATTCAAAAATAAATGTGATTTTCTCA
1 AAATAGAGAAATGGAAAACATTCAAAAATAAATATGATTTTCTCA
13892366 AAAT
1 AAAT
13892370 TGAAATGAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
44 27 0.66
45 14 0.34
ACGTcount: A:0.47, C:0.09, G:0.15, T:0.29
Consensus pattern (45 bp):
AAATAGAGAAATGGAAAACATTCAAAAATAAATATGATTTTCTCA
Found at i:13899766 original size:19 final size:20
Alignment explanation
Indices: 13899726--13899766 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
13899716 TCACTTTGAA
*
13899726 AAATATTGTTTTGTTAATGC
1 AAATATTGTTTTGGTAATGC
13899746 AAAT-TTGTTTATGGTAA-GC
1 AAATATTGTTT-TGGTAATGC
13899765 AA
1 AA
13899767 GAATTGTCGT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.34, C:0.05, G:0.17, T:0.44
Consensus pattern (20 bp):
AAATATTGTTTTGGTAATGC
Found at i:13900454 original size:21 final size:20
Alignment explanation
Indices: 13900436--13900504 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 20
13900426 TATGAAAAGT
13900436 ATTATAAAATTATAGAAAAAA
1 ATTA-AAAATTATAGAAAAAA
* *
13900457 ATTAAAAA-TATAGAACACA
1 ATTAAAAATTATAGAAAAAA
* * *
13900476 ATCAATAAGTTATAGAAAATA
1 ATTAA-AAATTATAGAAAAAA
13900497 A-TAAAAAT
1 ATTAAAAAT
13900505 ATAAAAATTA
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
19 16 0.42
20 8 0.21
21 14 0.37
ACGTcount: A:0.64, C:0.04, G:0.06, T:0.26
Consensus pattern (20 bp):
ATTAAAAATTATAGAAAAAA
Found at i:13903013 original size:11 final size:11
Alignment explanation
Indices: 13902997--13903022 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
13902987 ATTTTTTTAA
13902997 TTTTAAAATAC
1 TTTTAAAATAC
13903008 TTTTAAAATAC
1 TTTTAAAATAC
13903019 TTTT
1 TTTT
13903023 TTTTAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:13903073 original size:49 final size:49
Alignment explanation
Indices: 13902981--13903083 Score: 188
Period size: 50 Copynumber: 2.1 Consensus size: 49
13902971 ATAATAAATA
13902981 TTTTTAATTTTTTTAATTTTAAAATACTTTTAAAATACTTTTTTTTAAT
1 TTTTTAATTTTTTTAATTTTAAAATACTTTTAAAATACTTTTTTTTAAT
*
13903030 TTTTTAATTTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTTTAAT
1 TTTTTAATTTTTTT-AATTTTAAAATACTTTTAAAATACTTTTTTTTAAT
13903080 TTTT
1 TTTT
13903084 GTTTTAATTT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 14 0.27
50 38 0.73
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (49 bp):
TTTTTAATTTTTTTAATTTTAAAATACTTTTAAAATACTTTTTTTTAAT
Found at i:13903118 original size:25 final size:24
Alignment explanation
Indices: 13903077--13903123 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
13903067 ACTTTTTTTT
*
13903077 AATTTTTGTTTTAATTTTAAAATA
1 AATTTTTGTTTTAATTTAAAAATA
13903101 AATTTTTGGTATTT-ATTTAAAAA
1 AATTTTT-GT-TTTAATTTAAAAA
13903124 ACGGACCGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 7 0.35
25 10 0.50
26 3 0.15
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.55
Consensus pattern (24 bp):
AATTTTTGTTTTAATTTAAAAATA
Found at i:13907436 original size:31 final size:31
Alignment explanation
Indices: 13907390--13907477 Score: 117
Period size: 31 Copynumber: 2.9 Consensus size: 31
13907380 TTTTAGACTT
**
13907390 AAATAATT-AAAAATTAATTAAACCCTTTTA
1 AAATAATTAAAAAATTAATTAAACCCTCATA
*
13907420 AAATAATTAAAAAATTAATTAAGCCCTCATA
1 AAATAATTAAAAAATTAATTAAACCCTCATA
*
13907451 AAATAATTAAAATAA-CAATTAAACCCT
1 AAATAATTAAAA-AATTAATTAAACCCT
13907478 ATACATCAAC
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
30 8 0.16
31 41 0.80
32 2 0.04
ACGTcount: A:0.56, C:0.12, G:0.01, T:0.31
Consensus pattern (31 bp):
AAATAATTAAAAAATTAATTAAACCCTCATA
Found at i:13908762 original size:22 final size:21
Alignment explanation
Indices: 13908737--13908780 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
13908727 GTGTCTCTCA
*
13908737 AATTTAATCTTTAATTTTTTTT
1 AATTTAATCTTT-ATTCTTTTT
* *
13908759 AATTTGATGTTTATTCTTTTT
1 AATTTAATCTTTATTCTTTTT
13908780 A
1 A
13908781 GAATTAAAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.25, C:0.05, G:0.05, T:0.66
Consensus pattern (21 bp):
AATTTAATCTTTATTCTTTTT
Found at i:13908993 original size:30 final size:30
Alignment explanation
Indices: 13908940--13909019 Score: 101
Period size: 31 Copynumber: 2.7 Consensus size: 30
13908930 ATATGTCACG
*
13908940 TCAAAAAATAATTTAAAAT-TAT-AAAATAT
1 TCAAAAAAAAATTTAAAATATATAAAAAT-T
13908969 TCAAAAAAAAATTTAAAATATATAAAAATT
1 TCAAAAAAAAATTTAAAATATATAAAAATT
**
13908999 TCATAAAAAAAACATAAAATA
1 TCA-AAAAAAAATTTAAAATA
13909020 AACATACAGA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
29 18 0.40
30 7 0.16
31 20 0.44
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (30 bp):
TCAAAAAAAAATTTAAAATATATAAAAATT
Found at i:13912089 original size:30 final size:32
Alignment explanation
Indices: 13912025--13912089 Score: 89
Period size: 30 Copynumber: 2.1 Consensus size: 32
13912015 TAGTAAAGGT
*
13912025 AAAATTATACTTTACTCTTTTAAAAATAATAA
1 AAAATTATACTTTACTCCTTTAAAAATAATAA
* *
13912057 AAAATTA-A-TTTAGTCCTTTAAAAATTATAA
1 AAAATTATACTTTACTCCTTTAAAAATAATAA
13912087 AAA
1 AAA
13912090 TATGATTGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
30 22 0.73
31 1 0.03
32 7 0.23
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.38
Consensus pattern (32 bp):
AAAATTATACTTTACTCCTTTAAAAATAATAA
Found at i:13912796 original size:24 final size:24
Alignment explanation
Indices: 13912778--13912830 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
13912768 TAATGGATAT
13912778 GGCAACAGCAACAGCAATGGTAAG
1 GGCAACAGCAACAGCAATGGTAAG
**
13912802 GGCAAGGGCAACAGCAATGGTAAG
1 GGCAACAGCAACAGCAATGGTAAG
13912826 GGCAA
1 GGCAA
13912831 GGGCGACAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.40, C:0.19, G:0.34, T:0.08
Consensus pattern (24 bp):
GGCAACAGCAACAGCAATGGTAAG
Found at i:13912796 original size:30 final size:30
Alignment explanation
Indices: 13912755--13912818 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
13912745 AATGGGAATG
* *
13912755 GCAACAACAATGGTAATGG-ATATGGCAACA
1 GCAACAACAATGGTAAGGGCA-AGGGCAACA
*
13912785 GCAACAGCAATGGTAAGGGCAAGGGCAACA
1 GCAACAACAATGGTAAGGGCAAGGGCAACA
13912815 GCAA
1 GCAA
13912819 TGGTAAGGGC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.42, C:0.19, G:0.28, T:0.11
Consensus pattern (30 bp):
GCAACAACAATGGTAAGGGCAAGGGCAACA
Found at i:13912831 original size:24 final size:24
Alignment explanation
Indices: 13912785--13912840 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
13912775 TATGGCAACA
13912785 GCAACAGCAATGGTAAGGGCAAGG
1 GCAACAGCAATGGTAAGGGCAAGG
13912809 GCAACAGCAATGGTAAGGGCAAGG
1 GCAACAGCAATGGTAAGGGCAAGG
*
13912833 GCGACAGC
1 GCAACAGC
13912841 GACGATGGCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.36, C:0.20, G:0.38, T:0.07
Consensus pattern (24 bp):
GCAACAGCAATGGTAAGGGCAAGG
Found at i:13915008 original size:23 final size:25
Alignment explanation
Indices: 13914956--13915005 Score: 66
Period size: 27 Copynumber: 2.0 Consensus size: 25
13914946 TATGTATTTG
*
13914956 TTTAATTAAATTTATTTTTACTTACAA
1 TTTAAATAAATTTATTTTTA-TTA-AA
13914983 TTTAAATAAATTTATTTTT-TTAA
1 TTTAAATAAATTTATTTTTATTAA
13915006 TTTCATACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 1 0.05
25 3 0.14
27 18 0.82
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (25 bp):
TTTAAATAAATTTATTTTTATTAAA
Found at i:13915159 original size:151 final size:149
Alignment explanation
Indices: 13914885--13915186 Score: 426
Period size: 151 Copynumber: 2.0 Consensus size: 149
13914875 TTGTAAGGTG
* ***
13914885 TTATAAAAAAACGACAACACTAGTTAGAAAAAAATTGGGGTGCATTTAATATTTTTGATCATATG
1 TTATAAAAAAACGACAACACTAGCTAGAAAAAAATTAAAGTGCATTTAATATTTTTGATCATATG
*** * * *
13914950 TATTTGTTTAATTAAATTTATTTTTACTTACAATTTAAATAAATTTATTTTTTTAATTTCAT-AC
66 TATTTACCTAATTAAATTTAATTTTACTCACAATTTAAATAAATTTATTTTTTAAATTTCATAAC
13915014 ATATTACATATATATTATTA
131 ATATT-CATATATATTATTA
* * *
13915034 TTATAGAAAAATGACAACACTGAGCTAGAAAAATAATTAAAGTGCATTTAATATTTTTTATCATA
1 TTATAAAAAAACGACAACACT-AGCTAGAAAAA-AATTAAAGTGCATTTAATATTTTTGATCATA
*
13915099 TGTATTTACCTATTTAAATTTAATTTTACTCACAATTTAAATAAATTTATTTTTTAAATTTCATA
64 TGTATTTACCTAATTAAATTTAATTTTACTCACAATTTAAATAAATTTATTTTTTAAATTTCATA
13915164 GCACATATTCATATATATTATTA
129 --ACATATTCATATATATTATTA
13915187 ATTTCAAAAC
Statistics
Matches: 134, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
149 19 0.14
150 10 0.07
151 84 0.63
153 14 0.10
154 7 0.05
ACGTcount: A:0.40, C:0.09, G:0.07, T:0.44
Consensus pattern (149 bp):
TTATAAAAAAACGACAACACTAGCTAGAAAAAAATTAAAGTGCATTTAATATTTTTGATCATATG
TATTTACCTAATTAAATTTAATTTTACTCACAATTTAAATAAATTTATTTTTTAAATTTCATAAC
ATATTCATATATATTATTA
Found at i:13915190 original size:31 final size:30
Alignment explanation
Indices: 13915145--13915217 Score: 76
Period size: 31 Copynumber: 2.4 Consensus size: 30
13915135 TTAAATAAAT
* * *
13915145 TTATTTTTTAAATTTCATAGCACATA-TTCA
1 TTATTTATT-AATTTCAAAACACATATTTCA
*
13915175 TATATATTATTAATTTCAAAACATATATTTCA
1 T-TAT-TTATTAATTTCAAAACACATATTTCA
13915207 TTATTTATTAA
1 TTATTTATTAA
13915218 ATATTATTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
30 8 0.22
31 19 0.53
32 9 0.25
ACGTcount: A:0.38, C:0.10, G:0.01, T:0.51
Consensus pattern (30 bp):
TTATTTATTAATTTCAAAACACATATTTCA
Found at i:13918872 original size:12 final size:12
Alignment explanation
Indices: 13918855--13918879 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
13918845 ATCAACAATA
13918855 TGTTTCATAAAG
1 TGTTTCATAAAG
13918867 TGTTTCATAAAG
1 TGTTTCATAAAG
13918879 T
1 T
13918880 TTGGTGATGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (12 bp):
TGTTTCATAAAG
Found at i:13919144 original size:16 final size:17
Alignment explanation
Indices: 13919111--13919152 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
13919101 TTTAAACCTT
13919111 AAACTCAATATTAGTTA
1 AAACTCAATATTAGTTA
* *
13919128 AAACTTAATATT-TTTA
1 AAACTCAATATTAGTTA
13919144 AAAGCTCAA
1 AAA-CTCAA
13919153 ATCCATTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 6 0.29
17 15 0.71
ACGTcount: A:0.48, C:0.12, G:0.05, T:0.36
Consensus pattern (17 bp):
AAACTCAATATTAGTTA
Done.