Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 46 of 144
Found at i:14314828 original size:61 final size:61
Alignment explanation
Indices: 14314756--14314890 Score: 180
Period size: 61 Copynumber: 2.2 Consensus size: 61
14314746 ACAAATCTGG
* * * ** *
14314756 AAAGGAAAGCCTTTGTGGCACAATTCTGGACACGATTGCCTTTGTGGCGAGTATTGAATGT
1 AAAGGAAAGCCTTTGTGGCACAACTCTAGACAAGAAAGCCTTTGTGGCGAGTACTGAATGT
* * *
14314817 AAAGGATAGCCTTTGTGGCAGAACTCTAGACAATAAAGCCTTTGTGGCGAGTACTGAATGT
1 AAAGGAAAGCCTTTGTGGCACAACTCTAGACAAGAAAGCCTTTGTGGCGAGTACTGAATGT
*
14314878 AAAGGAAAACCTT
1 AAAGGAAAGCCTT
14314891 CATGGAAACC
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
61 63 1.00
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (61 bp):
AAAGGAAAGCCTTTGTGGCACAACTCTAGACAAGAAAGCCTTTGTGGCGAGTACTGAATGT
Found at i:14317478 original size:76 final size:76
Alignment explanation
Indices: 14317366--14317686 Score: 304
Period size: 76 Copynumber: 4.2 Consensus size: 76
14317356 AGTATAACCA
* * * * * *
14317366 ACTAGTGTTGGGCACACATTTGACATCGT-TAGTTTATCCGATTAGCGCTGGGTGCAAAATATTG
1 ACTAGTGCTGGGCACACATTTGACATCGTCGA-TTTATCCAACTAGCGCTGGGCGCAAAACATTG
14317430 TCGGGTTATCCG
65 TCGGGTTATCCG
* * ** * * ** * * *
14317442 AGTAGTGCTGGGCACATATTTGACATTTTCGATTTATCCGATTAGCATTGGGCACAAGACGTTGT
1 ACTAGTGCTGGGCACACATTTGACATCGTCGATTTATCCAACTAGCGCTGGGCGCAAAACATTGT
* * *
14317507 TGGTTTATTCG
66 CGGGTTATCCG
* * * * *
14317518 GCTAGTGCTAGGCACACATTTGATATCGTCAATTTATCCAACTAGCGCTGGGCGCAAAACATTTT
1 ACTAGTGCTGGGCACACATTTGACATCGTCGATTTATCCAACTAGCGCTGGGCGCAAAACATTGT
* *
14317583 TGGGTTATTCG
66 CGGGTTATCCG
* * * *
14317594 ACTAGTGCTGGGCACATATTTGACATCGTC-AGTTTATCCAACTAGCGCTAGGCGCAAGACGTTG
1 ACTAGTGCTGGGCACACATTTGACATCGTCGA-TTTATCCAACTAGCGCTGGGCGCAAAACATTG
*
14317658 TCGGTTTATCCG
65 TCGGGTTATCCG
* *
14317670 ACTAGTGCAGGGTACAC
1 ACTAGTGCTGGGCACAC
14317687 CCATCTTTAG
Statistics
Matches: 196, Mismatches: 47, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
75 1 0.01
76 194 0.99
77 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (76 bp):
ACTAGTGCTGGGCACACATTTGACATCGTCGATTTATCCAACTAGCGCTGGGCGCAAAACATTGT
CGGGTTATCCG
Found at i:14317630 original size:152 final size:152
Alignment explanation
Indices: 14317366--14317677 Score: 392
Period size: 152 Copynumber: 2.1 Consensus size: 152
14317356 AGTATAACCA
* * * * * * * *
14317366 ACTAGTGTTGGGCACACATTTGACATCGTTAGTTTATCCGATTAGCGCTGGGTGCAAAATATTGT
1 ACTAGTGCTAGGCACACATTTGACATCGTCAATTTATCCAACTAGCGCTGGGCGCAAAACATTGT
* ** * * * *
14317431 CGGGTTATCCGAGTAGTGCTGGGCACATATTTGACATTTTCGATTTATCCGATTAGCATTGGGCA
66 CGGGTTATCCGACTAGTGCTGGGCACATATTTGACATCGTCGATTTATCCAACTAGCACTAGGCA
* *
14317496 CAAGACGTTGTTGGTTTATTCG
131 CAAGACGTTGTCGGTTTATCCG
* * *
14317518 GCTAGTGCTAGGCACACATTTGATATCGTCAATTTATCCAACTAGCGCTGGGCGCAAAACATTTT
1 ACTAGTGCTAGGCACACATTTGACATCGTCAATTTATCCAACTAGCGCTGGGCGCAAAACATTGT
* * *
14317583 TGGGTTATTCGACTAGTGCTGGGCACATATTTGACATCGTC-AGTTTATCCAACTAGCGCTAGGC
66 CGGGTTATCCGACTAGTGCTGGGCACATATTTGACATCGTCGA-TTTATCCAACTAGCACTAGGC
*
14317647 GCAAGACGTTGTCGGTTTATCCG
130 ACAAGACGTTGTCGGTTTATCCG
14317670 ACTAGTGC
1 ACTAGTGC
14317678 AGGGTACACC
Statistics
Matches: 134, Mismatches: 25, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
151 1 0.01
152 133 0.99
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (152 bp):
ACTAGTGCTAGGCACACATTTGACATCGTCAATTTATCCAACTAGCGCTGGGCGCAAAACATTGT
CGGGTTATCCGACTAGTGCTGGGCACATATTTGACATCGTCGATTTATCCAACTAGCACTAGGCA
CAAGACGTTGTCGGTTTATCCG
Found at i:14318373 original size:13 final size:13
Alignment explanation
Indices: 14318355--14318382 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
14318345 TTATCTAATG
14318355 TATATGGTAAGTT
1 TATATGGTAAGTT
14318368 TATATGGTAAGTT
1 TATATGGTAAGTT
14318381 TA
1 TA
14318383 AGTTCTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.46
Consensus pattern (13 bp):
TATATGGTAAGTT
Found at i:14321243 original size:91 final size:88
Alignment explanation
Indices: 14321076--14321270 Score: 266
Period size: 91 Copynumber: 2.2 Consensus size: 88
14321066 AACTGTAAAT
* *
14321076 ACTGGAGGTTTATCCACAAATTACTAGCAACTTTAATCTACAAACCCATTGTGTATTCACAGCTA
1 ACTGGTGGTTTATCCACAAATTACTAGCAACTTTAATCTACAAACCCATTGTGTATTCACAACTA
* *
14321141 CTGGCAGCATATTAACCTGCAAGC
66 CTGACAACATATTAACCTGCAA-C
* * * * *
14321165 ACTTGTGGTTTATCCACAACTTATACTGGCAACTATT-ATCTATAAACCCGTTGTGTATTCACAA
1 ACTGGTGGTTTATCCACAA-AT-TACTAGCAACT-TTAATCTACAAACCCATTGTGTATTCACAA
14321229 CTACTGACAACATATTAACCTGCAAC
63 CTACTGACAACATATTAACCTGCAAC
14321255 ACTGGTGGTTTATCCA
1 ACTGGTGGTTTATCCA
14321271 TAAAATGGTT
Statistics
Matches: 93, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
89 17 0.18
90 17 0.18
91 57 0.61
92 2 0.02
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (88 bp):
ACTGGTGGTTTATCCACAAATTACTAGCAACTTTAATCTACAAACCCATTGTGTATTCACAACTA
CTGACAACATATTAACCTGCAAC
Found at i:14323813 original size:14 final size:16
Alignment explanation
Indices: 14323794--14323831 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
14323784 CATAGCATTT
14323794 ACATAT-TCATGCAA-
1 ACATATATCATGCAAC
*
14323808 ACATATATCATGTAAC
1 ACATATATCATGCAAC
14323824 ACATATAT
1 ACATATAT
14323832 TTGAGCAAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 6 0.29
15 7 0.33
16 8 0.38
ACGTcount: A:0.45, C:0.18, G:0.05, T:0.32
Consensus pattern (16 bp):
ACATATATCATGCAAC
Found at i:14328250 original size:24 final size:24
Alignment explanation
Indices: 14328218--14328266 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
14328208 GCACAAAAGT
*
14328218 ATTTTTTTAGCCAAAGTTAGTCAC
1 ATTTTTTTAGCCAAAGCTAGTCAC
14328242 ATTTTTTTAGCCAAAGCTAGTCAC
1 ATTTTTTTAGCCAAAGCTAGTCAC
14328266 A
1 A
14328267 CACTTATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.39
Consensus pattern (24 bp):
ATTTTTTTAGCCAAAGCTAGTCAC
Found at i:14341553 original size:13 final size:12
Alignment explanation
Indices: 14341528--14341552 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14341518 TTTTCTATAA
14341528 TCGAATTTTTTT
1 TCGAATTTTTTT
14341540 TCGAATTTTTTT
1 TCGAATTTTTTT
14341552 T
1 T
14341553 TGAAACTACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.08, T:0.68
Consensus pattern (12 bp):
TCGAATTTTTTT
Found at i:14344152 original size:16 final size:16
Alignment explanation
Indices: 14344131--14344164 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
14344121 ACCATTGAAA
14344131 AAAAATTAA-ATTTATT
1 AAAAATTAATATTT-TT
14344147 AAAAATTAATATTTTT
1 AAAAATTAATATTTTT
14344163 AA
1 AA
14344165 TGATTTAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
AAAAATTAATATTTTT
Found at i:14348963 original size:20 final size:20
Alignment explanation
Indices: 14348938--14348977 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
14348928 CATGACGGAA
14348938 GCAGC-AACAGAAACAGAAAC
1 GCAGCAAACAGAAACA-AAAC
*
14348958 GCAGCAAACAGTAACAAAAC
1 GCAGCAAACAGAAACAAAAC
14348978 AACAATAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.55, C:0.25, G:0.17, T:0.03
Consensus pattern (20 bp):
GCAGCAAACAGAAACAAAAC
Found at i:14356130 original size:3 final size:3
Alignment explanation
Indices: 14356124--14356161 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
14356114 CTTCATGTGC
* *
14356124 ATT ATT ATT ATT ATT ATT ATT AGT ATT ATT AGT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
14356162 GACAATAATC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:14362248 original size:26 final size:26
Alignment explanation
Indices: 14362219--14362269 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14362209 TTTGAAATGG
*
14362219 AAAAAT-AATATGAATTTTACATTCAT
1 AAAAATGAATA-GAATTTTAAATTCAT
*
14362245 AAAAATGCATAGAATTTTAAATTCA
1 AAAAATGAATAGAATTTTAAATTCA
14362270 AAGTTGACAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.51, C:0.08, G:0.06, T:0.35
Consensus pattern (26 bp):
AAAAATGAATAGAATTTTAAATTCAT
Found at i:14363886 original size:21 final size:21
Alignment explanation
Indices: 14363870--14363913 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
14363860 AATAATTGAG
14363870 AATATATAATTATTAATTAAA
1 AATATATAATTATTAATTAAA
*
14363891 AATAATATAAATATT-ATTAAA
1 AAT-ATATAATTATTAATTAAA
14363912 AA
1 AA
14363914 ATAATATGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
AATATATAATTATTAATTAAA
Found at i:14363905 original size:22 final size:22
Alignment explanation
Indices: 14363873--14363920 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
14363863 AATTGAGAAT
*
14363873 ATATAATTATTAATT-AAAAATA
1 ATATAAATATT-ATTAAAAAATA
14363895 ATATAAATATTATTAAAAAATA
1 ATATAAATATTATTAAAAAATA
14363917 ATAT
1 ATAT
14363921 GAGTGATCGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
ATATAAATATTATTAAAAAATA
Found at i:14364062 original size:6 final size:6
Alignment explanation
Indices: 14364051--14364079 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
14364041 CCAACAGTTT
14364051 TCTTCC TCTTCC TCTTCC TCTTCC TCTTC
1 TCTTCC TCTTCC TCTTCC TCTTCC TCTTC
14364080 TTTCCCAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (6 bp):
TCTTCC
Found at i:14367794 original size:20 final size:20
Alignment explanation
Indices: 14367769--14367809 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
14367759 GTCTCTTGTC
14367769 TACTAAATAATCAGTTCATG
1 TACTAAATAATCAGTTCATG
14367789 TACTAAATAATCAGTTCATG
1 TACTAAATAATCAGTTCATG
14367809 T
1 T
14367810 GAATGTAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.37
Consensus pattern (20 bp):
TACTAAATAATCAGTTCATG
Found at i:14368020 original size:21 final size:21
Alignment explanation
Indices: 14367994--14368040 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
14367984 TGCTTCAACG
14367994 TCAAATTAGCAGTTACTCGTA
1 TCAAATTAGCAGTTACTCGTA
14368015 TCAAATTAGCAGTTACTCGTA
1 TCAAATTAGCAGTTACTCGTA
14368036 T-AAAT
1 TCAAAT
14368041 GAATAAAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.15
21 22 0.85
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (21 bp):
TCAAATTAGCAGTTACTCGTA
Found at i:14395964 original size:2 final size:2
Alignment explanation
Indices: 14395957--14395990 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
14395947 CCCCTCGTTC
14395957 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14395991 TTGAGCTAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:14401882 original size:22 final size:23
Alignment explanation
Indices: 14401841--14401884 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
14401831 ATTATAATTG
**
14401841 ATTTTTAAAATATTTTAAAAAAT
1 ATTTTTAAAATATTAAAAAAAAT
14401864 ATTTTT-AAATATTAAAAAAAA
1 ATTTTTAAAATATTAAAAAAAA
14401885 AGCTTTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (23 bp):
ATTTTTAAAATATTAAAAAAAAT
Found at i:14404373 original size:12 final size:13
Alignment explanation
Indices: 14404356--14404386 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
14404346 TCAATCTTTC
14404356 TATTTTTA-TTTT
1 TATTTTTATTTTT
14404368 TATTTTTATTTTT
1 TATTTTTATTTTT
14404381 TATTTT
1 TATTTT
14404387 GTAAACGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 8 0.44
13 10 0.56
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (13 bp):
TATTTTTATTTTT
Found at i:14404374 original size:7 final size:6
Alignment explanation
Indices: 14404356--14404386 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
14404346 TCAATCTTTC
14404356 TATTTT TATTTT TATTTT TATTTTT TATTTT
1 TATTTT TATTTT TATTTT TA-TTTT TATTTT
14404387 GTAAACGAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:14405331 original size:30 final size:30
Alignment explanation
Indices: 14405267--14405331 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 30
14405257 TAATTCCAAG
* * * * *
14405267 TTTTATTATATATGTATATATATACATATC
1 TTTTATAATATATATAAATATATACACATA
*
14405297 TTTTATAATATATATAAATATATGCACATA
1 TTTTATAATATATATAAATATATACACATA
14405327 TTTTA
1 TTTTA
14405332 CAATTCGCAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.40, C:0.06, G:0.03, T:0.51
Consensus pattern (30 bp):
TTTTATAATATATATAAATATATACACATA
Found at i:14413495 original size:128 final size:127
Alignment explanation
Indices: 14413226--14413456 Score: 293
Period size: 128 Copynumber: 1.8 Consensus size: 127
14413216 AGTGAATATT
* * * * * *
14413226 ATAGACCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCAAAGACGGCAAATCTTATCTTCAAGTGT
1 ATAGATCTTATCTCCCTAAGCAATAGCAGAGCAGATCAAAGACGACAAATCTTACCTTCAAGTGT
* * * * * *
14413291 AAGAAAGCAGATTTAAGCCATAAGTCCTATGTCCTTGGTCAGCAGTGGAATAGGTTGGAAATT
66 AAGAAAGCAGATTGAAGCCATAAGTCCTATCTCCCTGATCAGCAGTGGAAGAGGTT-GAAATA
* * *
14413354 ACAGATCTTATCTCCCTAAGCAATAGCAGAGCAGATCGAAGACGACGAATCTTACCTTCAAGTGT
1 ATAGATCTTATCTCCCTAAGCAATAGCAGAGCAGATCAAAGACGACAAATCTTACCTTCAAGTGT
*
14413419 AAGGAAGCAGATTGAAGCCGATAA-TCCTATCTCCCTGA
66 AAGAAAGCAGATTGAAGCC-ATAAGTCCTATCTCCCTGA
14413457 AATTGTAGTG
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
128 84 0.95
129 4 0.05
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (127 bp):
ATAGATCTTATCTCCCTAAGCAATAGCAGAGCAGATCAAAGACGACAAATCTTACCTTCAAGTGT
AAGAAAGCAGATTGAAGCCATAAGTCCTATCTCCCTGATCAGCAGTGGAAGAGGTTGAAATA
Found at i:14413750 original size:173 final size:173
Alignment explanation
Indices: 14413571--14413899 Score: 385
Period size: 173 Copynumber: 1.9 Consensus size: 173
14413561 GAGAAAACAA
* * * * * * **
14413571 GTCTTATCCCCCTGAAGTCACAGTGGGGTAGACTGA-AGAAGCAAATCTTATCTCCCTGAGGTTG
1 GTCTTATCCCCATGAAGTCACAGTGGAGCAGACTGAGA-AAACAAATCTTATCCCCCTGAAGTCA
* ** * *
14413635 CAGTGGAGCAGATTGAAGTCG-ATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGT-
65 CAGTGGAGCAGACTGAAGAAGCA-AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTC
* *
14413698 AATAGATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATCAG
129 AATA-ATCCTATCTCCCTGAAGTTGTAGTAGAGTAGATCGCATCAG
* * * *
14413744 GTCTTATCTCCATGAGGTTACAGTGGAGCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCAC
1 GTCTTATCCCCATGAAGTCACAGTGGAGCAGACTGAGAAAACAAATCTTATCCCCCTGAAGTCAC
* * * * * *
14413809 AGTGGGGTAGACTGAAGAAGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTCGA
66 AGTGGAGCAGACTGAAGAAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAA
14413874 TAATCCTATCTCCCTGAAGTTGTAGT
131 TAATCCTATCTCCCTGAAGTTGTAGT
14413900 GGAGCGGATT
Statistics
Matches: 128, Mismatches: 25, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
173 123 0.96
174 5 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (173 bp):
GTCTTATCCCCATGAAGTCACAGTGGAGCAGACTGAGAAAACAAATCTTATCCCCCTGAAGTCAC
AGTGGAGCAGACTGAAGAAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAA
TAATCCTATCTCCCTGAAGTTGTAGTAGAGTAGATCGCATCAG
Found at i:14413799 original size:217 final size:217
Alignment explanation
Indices: 14413424--14414394 Score: 1674
Period size: 217 Copynumber: 4.5 Consensus size: 217
14413414 AGTGTAAGGA
* *
14413424 AGCAGATTGAAGCCGATAATCCTATCTCCCTGAAATTGTAGTGGAGCGGATTAAAGTAATAGATC
1 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
14413489 TTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGGTTACAGTGGA
66 TTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGGTTACAGTGGA
14413554 GCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGGGGTAGACTGAAGAAGCAAATCT
131 GCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGGGGTAGACTGAAGAAGCAAATCT
14413619 TATCTCCCTGAGGTTGCAGTGG
196 TATCTCCCTGAGGTTGCAGTGG
14413641 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
1 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
14413706 TTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGGTTACAGTGGA
66 TTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGGTTACAGTGGA
14413771 GCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGGGGTAGACTGAAGAAGCAAATCT
131 GCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGGGGTAGACTGAAGAAGCAAATCT
14413836 TATCTCCCTGAGGTTGCAGTGG
196 TATCTCCCTGAGGTTGCAGTGG
14413858 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
1 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
* * * * * * * *
14413923 TTATTTCCCTGAAATTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAAGTTACAGCGGA
66 TTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGGTTACAGTGGA
* * * ** * *
14413988 GCAGACTGAGTAAGCAGGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGA-TCGAAGATGACAAAT
131 GCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGGGGTAGACT-GAAGAAG-CAAAT
* * * *
14414052 CTTATCTCCTTGAAGTTACAATGG
194 CTTATCTCCCTGAGGTTGCAGTGG
* * *
14414076 AGCAGATTGAAGCCAATAATTCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
1 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
14414141 TTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGGTTACAGTGGA
66 TTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGGTTACAGTGGA
14414206 GCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGGGGTAGACTGAAGAAGCAAATCT
131 GCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGGGGTAGACTGAAGAAGCAAATCT
14414271 TATCTCCCTGAGGTTGCAGTGG
196 TATCTCCCTGAGGTTGCAGTGG
14414293 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
1 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
* * *
14414358 TTATCTCTCTGAAGTTGCAGTAGAGCACATCGCATCA
66 TTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATCA
14414395 AGGCTTGCCG
Statistics
Matches: 702, Mismatches: 49, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
216 1 0.00
217 507 0.72
218 193 0.27
219 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (217 bp):
AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
TTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGGTTACAGTGGA
GCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGGGGTAGACTGAAGAAGCAAATCT
TATCTCCCTGAGGTTGCAGTGG
Found at i:14414233 original size:435 final size:434
Alignment explanation
Indices: 14413424--14414394 Score: 1683
Period size: 435 Copynumber: 2.2 Consensus size: 434
14413414 AGTGTAAGGA
* *
14413424 AGCAGATTGAAGCCGATAATCCTATCTCCCTGAAATTGTAGTGGAGCGGATTAAAGTAATAGATC
1 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
* * *
14413489 TTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGGTTACAGTGGA
66 TTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAAGTTACAGCGGA
*
14413554 GCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGGGGTAGACTGAAGAAGCAAATCT
131 GCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGGGGCAGACTGAAGAAGCAAATCT
* * * * *
14413619 TATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTG
196 TATCTCCCTGAAGTTACAATGGAGCAGATTGAAGCCAATAATCCTATCTCCCTGAAGTTGTAGTG
14413684 GAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATCAGGTCTT
261 GAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATCAGGTCTT
14413749 ATCTCCATGAGGTTACAGTGGAGCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGG
326 ATCTCCATGAGGTTACAGTGGAGCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGG
14413814 GGTAGACTGAAGAAGCAAATCTTATCTCCCTGAGGTTGCAGTGG
391 GGTAGACTGAAGAAGCAAATCTTATCTCCCTGAGGTTGCAGTGG
14413858 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
1 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
* * * * *
14413923 TTATTTCCCTGAAATTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAAGTTACAGCGGA
66 TTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAAGTTACAGCGGA
* * * ** *
14413988 GCAGACTGAGTAAGCAGGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGA-TCGAAGATGACAAAT
131 GCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGGGGCAGACT-GAAGAAG-CAAAT
* *
14414052 CTTATCTCCTTGAAGTTACAATGGAGCAGATTGAAGCCAATAATTCTATCTCCCTGAAGTTGTAG
194 CTTATCTCCCTGAAGTTACAATGGAGCAGATTGAAGCCAATAATCCTATCTCCCTGAAGTTGTAG
14414117 TGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATCAGGTC
259 TGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATCAGGTC
14414182 TTATCTCCATGAGGTTACAGTGGAGCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGT
324 TTATCTCCATGAGGTTACAGTGGAGCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGT
14414247 GGGGTAGACTGAAGAAGCAAATCTTATCTCCCTGAGGTTGCAGTGG
389 GGGGTAGACTGAAGAAGCAAATCTTATCTCCCTGAGGTTGCAGTGG
14414293 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
1 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
* *
14414358 TTATCTCTCTGAAGTTGCAGTAGAGCACATCGCATCA
66 TTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCA
14414395 AGGCTTGCCG
Statistics
Matches: 505, Mismatches: 30, Indels: 3
0.94 0.06 0.01
Matches are distributed among these distances:
433 1 0.00
434 169 0.33
435 335 0.66
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (434 bp):
AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
TTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAAGTTACAGCGGA
GCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGGGGCAGACTGAAGAAGCAAATCT
TATCTCCCTGAAGTTACAATGGAGCAGATTGAAGCCAATAATCCTATCTCCCTGAAGTTGTAGTG
GAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATCAGGTCTT
ATCTCCATGAGGTTACAGTGGAGCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGG
GGTAGACTGAAGAAGCAAATCTTATCTCCCTGAGGTTGCAGTGG
Found at i:14414304 original size:44 final size:44
Alignment explanation
Indices: 14413528--14414384 Score: 428
Period size: 44 Copynumber: 19.7 Consensus size: 44
14413518 TCGCATCAGG
* * * * * *
14413528 TCTTATCTCCATGAGGTTACAGTGGAGCAGACTG-AGAAAACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-AAGCAAA
* ** * * *
14413572 TCTTATCCCCCTGAAGTCACAGTGGGGTAGACTGAAGAAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAGCAAA
* **
14413616 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTCG-ATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAGCA-AA
* * * * * *
14413660 TCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAA-TAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-AAGCAAA
* * * * * * * **
14413704 TCTTATCTCTCTGAAGTTGTAGTAGAGTAGA-T--CGCATCAGG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAGCAAA
* * * * * *
14413745 TCTTATCTCCATGAGGTTACAGTGGAGCAGACTG-AGAAAACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-AAGCAAA
* ** * * *
14413789 TCTTATCCCCCTGAAGTCACAGTGGGGTAGACTGAAGAAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAGCAAA
* **
14413833 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTCG-ATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAGCA-AA
* * * * * *
14413877 TCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAA-TAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-AAGCAAA
* * * * * * **
14413921 TCTTATTTCCCTGAAATTGCAGT--AG-AG-TGGATCGCATCAGG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA-AGAAGCAAA
* * * **
14413962 TCTTATCTCCCTGAAGTTACAGCGGAGCAGACTG-AGTAAGCAGG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-AAGCAAA
* * * *
14414006 TCTTATCCCCCTGAAGTTGCAGTGGGGCAGATCGAAGATGACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAG-CAAA
* * * * *
14414051 TCTTATCTCCTTGAAGTTACAATGGAGCAGATTGAAGCCAA-TAAT
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--AAGCAAA
* * * * *
14414096 TC-TATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAA-TAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-AAGCAAA
* * * * * * * **
14414139 TCTTATCTCTCTGAAGTTGTAGTAGAGTAGA-T--CGCATCAGG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAGCAAA
* * * * * *
14414180 TCTTATCTCCATGAGGTTACAGTGGAGCAGACTG-AGAAAACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-AAGCAAA
* ** * * *
14414224 TCTTATCCCCCTGAAGTCACAGTGGGGTAGACTGAAGAAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAGCAAA
* **
14414268 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTCG-ATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAGCA-AA
* * * * * *
14414312 TCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAA-TAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-AAGCAAA
* *
14414356 TCTTATCTCTCTGAAGTTGCAGTAGAGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCA
14414385 CATCGCATCA
Statistics
Matches: 615, Mismatches: 166, Indels: 64
0.73 0.20 0.08
Matches are distributed among these distances:
40 5 0.01
41 77 0.13
42 4 0.01
43 16 0.03
44 463 0.75
45 49 0.08
47 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAGCAAA
Found at i:14422419 original size:62 final size:62
Alignment explanation
Indices: 14422322--14422445 Score: 239
Period size: 62 Copynumber: 2.0 Consensus size: 62
14422312 AAGATTGAAC
14422322 ACTGCTGGTAATTGGTTCAACCAGAAGCAAAGTCATAAATGACAACGAAATAAATGTGCAAA
1 ACTGCTGGTAATTGGTTCAACCAGAAGCAAAGTCATAAATGACAACGAAATAAATGTGCAAA
*
14422384 ACTGCTGGTAATTGGTTCAACCAGAAGCAAAGTCATAAATGACAACGAAATTAATGTGCAAA
1 ACTGCTGGTAATTGGTTCAACCAGAAGCAAAGTCATAAATGACAACGAAATAAATGTGCAAA
14422446 TTGTACAAGT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.43, C:0.16, G:0.19, T:0.22
Consensus pattern (62 bp):
ACTGCTGGTAATTGGTTCAACCAGAAGCAAAGTCATAAATGACAACGAAATAAATGTGCAAA
Found at i:14426250 original size:15 final size:16
Alignment explanation
Indices: 14426219--14426252 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
14426209 TAATATTAAT
14426219 AAACTAAAAAAATTGA
1 AAACTAAAAAAATTGA
*
14426235 AAACTCAAAAAA-TGA
1 AAACTAAAAAAATTGA
14426250 AAA
1 AAA
14426253 AACTCATCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.71, C:0.09, G:0.06, T:0.15
Consensus pattern (16 bp):
AAACTAAAAAAATTGA
Found at i:14426305 original size:12 final size:12
Alignment explanation
Indices: 14426290--14426317 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
14426280 TCCTCCTCCC
14426290 TCTCCATGTCCA
1 TCTCCATGTCCA
14426302 TCTCCATGTCCA
1 TCTCCATGTCCA
14426314 TCTC
1 TCTC
14426318 TAATCAGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.43, G:0.07, T:0.36
Consensus pattern (12 bp):
TCTCCATGTCCA
Found at i:14427312 original size:4 final size:4
Alignment explanation
Indices: 14427303--14427417 Score: 115
Period size: 4 Copynumber: 29.0 Consensus size: 4
14427293 CTCGAGAGAA
* * * * **
14427303 TATG TATG TATG TATG TACG TA-G TATG TACG CACG TATG TCCG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
** ** *
14427350 TACA TATG CGTG TATA TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
14427398 TATA TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG
14427418 CGGAAAAACC
Statistics
Matches: 89, Mismatches: 21, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
3 3 0.03
4 86 0.97
ACGTcount: A:0.26, C:0.07, G:0.23, T:0.43
Consensus pattern (4 bp):
TATG
Found at i:14430120 original size:18 final size:18
Alignment explanation
Indices: 14430099--14430154 Score: 78
Period size: 18 Copynumber: 3.1 Consensus size: 18
14430089 GTCTATTTTC
*
14430099 TTTTCTTTTATTATTATT
1 TTTTCTTTTATTTTTATT
*
14430117 TTTTCTTTTATTTTTA-A
1 TTTTCTTTTATTTTTATT
14430134 TTTTCTGTTTATTTTTATT
1 TTTTCT-TTTATTTTTATT
14430153 TT
1 TT
14430155 CTTAGACTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
17 6 0.18
18 25 0.76
19 2 0.06
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (18 bp):
TTTTCTTTTATTTTTATT
Found at i:14430136 original size:7 final size:6
Alignment explanation
Indices: 14430104--14430154 Score: 50
Period size: 6 Copynumber: 8.5 Consensus size: 6
14430094 TTTTCTTTTC
* * * *
14430104 TTTTAT TATTAT TTTT-T CTTTTAT TTTTAA TTTTCT GTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT -TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
14430152 TTT
1 TTT
14430155 CTTAGACTTA
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
5 1 0.03
6 33 0.94
7 1 0.03
ACGTcount: A:0.16, C:0.04, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:14435116 original size:27 final size:27
Alignment explanation
Indices: 14435077--14435350 Score: 243
Period size: 27 Copynumber: 10.3 Consensus size: 27
14435067 AGAGGTTAAT
*
14435077 AAATGATCGAATTACCCCCACAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* * * *
14435104 AAATGACCAAATTACCCTCAAAAGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* *
14435131 AAATAACCGAATTA---CCACATGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* *
14435155 AAATGACCGAATTACCCTCACAAGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* * *
14435182 ACATGACCGAATTACCCTCACAAGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* * *
14435209 AAATAACCGAATTATCCCCACAAGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* *
14435236 AAATAACCGAATTACCCCTACAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* ***
14435263 AAAT-AGCTGAATTATCCCCTGTAGGGTA
1 AAATGA-CCGAATTA-CCCCCACAGGGTA
*
14435291 AAATGACCGAATTACCCCCA-TGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* * * ** *
14435317 AAATGAACAAAATACCCTTATAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
14435344 AAATGAC
1 AAATGAC
14435351 TGTTATACCC
Statistics
Matches: 205, Mismatches: 35, Indels: 14
0.81 0.14 0.06
Matches are distributed among these distances:
24 20 0.10
26 21 0.10
27 141 0.69
28 22 0.11
29 1 0.00
ACGTcount: A:0.41, C:0.23, G:0.15, T:0.20
Consensus pattern (27 bp):
AAATGACCGAATTACCCCCACAGGGTA
Found at i:14435207 original size:78 final size:79
Alignment explanation
Indices: 14435077--14435266 Score: 265
Period size: 78 Copynumber: 2.4 Consensus size: 79
14435067 AGAGGTTAAT
* *
14435077 AAATGATCGAATTACCCCCACAGGGTAAAATGACCAAATTACCCTCAAAAGGTAAAATAACCGAA
1 AAATGACCGAATTACCCCCACAAGGTAAAATGACCAAATTACCCTCAAAAGGTAAAATAACCGAA
*
14435142 TTA-CCACATGGTA
66 TTACCCACAAGGTA
* * * *
14435155 AAATGACCGAATTACCCTCACAAGGTAACATGACCGAATTACCCTCACAAGGTAAAATAACCGAA
1 AAATGACCGAATTACCCCCACAAGGTAAAATGACCAAATTACCCTCAAAAGGTAAAATAACCGAA
14435220 TTATCCCCACAAGGTA
66 TTA--CCCACAAGGTA
* * *
14435236 AAATAACCGAATTACCCCTACAGGGTAAAAT
1 AAATGACCGAATTACCCCCACAAGGTAAAAT
14435267 AGCTGAATTA
Statistics
Matches: 97, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
78 62 0.64
81 35 0.36
ACGTcount: A:0.43, C:0.25, G:0.14, T:0.19
Consensus pattern (79 bp):
AAATGACCGAATTACCCCCACAAGGTAAAATGACCAAATTACCCTCAAAAGGTAAAATAACCGAA
TTACCCACAAGGTA
Found at i:14435317 original size:81 final size:79
Alignment explanation
Indices: 14435084--14435350 Score: 274
Period size: 81 Copynumber: 3.3 Consensus size: 79
14435074 AATAAATGAT
* * * *
14435084 CGAATTACCCCCACAGGGTAAAATGACCAAATTACCCTCAAAAGGTAAAATAACCGAATTA-CCA
1 CGAATTACCCCTACAGGGTAAAATGACCGAATTACCCTCACAAGGTAAAATAACCGAATTACCCC
*
14435148 CATGGTAAAATGAC
66 CATGGTAAAATAAC
* *
14435162 CGAATTA-CCCTCACAAGGTAACATGACCGAATTACCCTCACAAGGTAAAATAACCGAATTATCC
1 CGAATTACCCCT-ACAGGGTAAAATGACCGAATTACCCTCACAAGGTAAAATAACCGAATTA-CC
*
14435226 CCACAAGGTAAAATAAC
64 CC-CATGGTAAAATAAC
* ** * *
14435243 CGAATTACCCCTACAGGGTAAAAT-AGCTGAATTATCCC-CTGTAGGGTAAAATGACCGAATTAC
1 CGAATTACCCCTACAGGGTAAAATGA-CCGAATTA-CCCTC-ACAAGGTAAAATAACCGAATTAC
14435306 CCCCATGGGTAAAATGAA-
63 CCCCAT-GGTAAAAT-AAC
* * * *
14435324 CAAAATACCCTTATAGGGTAAAATGAC
1 CGAATTACCCCTACAGGGTAAAATGAC
14435351 TGTTATACCC
Statistics
Matches: 158, Mismatches: 20, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
77 3 0.02
78 52 0.33
80 5 0.03
81 70 0.44
82 28 0.18
ACGTcount: A:0.41, C:0.24, G:0.15, T:0.20
Consensus pattern (79 bp):
CGAATTACCCCTACAGGGTAAAATGACCGAATTACCCTCACAAGGTAAAATAACCGAATTACCCC
CATGGTAAAATAAC
Found at i:14435842 original size:33 final size:33
Alignment explanation
Indices: 14435795--14435860 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
14435785 ATGATATTAC
* *
14435795 TTACTGTATTGGGCTAAGGCCCACACTGTACTG
1 TTACTGAATAGGGCTAAGGCCCACACTGTACTG
* * *
14435828 TTACTGAATAGGGCTCAGGCCTAGACTGTACTG
1 TTACTGAATAGGGCTAAGGCCCACACTGTACTG
14435861 CTTGTTGTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.29
Consensus pattern (33 bp):
TTACTGAATAGGGCTAAGGCCCACACTGTACTG
Found at i:14438080 original size:43 final size:42
Alignment explanation
Indices: 14438033--14438145 Score: 113
Period size: 42 Copynumber: 2.6 Consensus size: 42
14438023 AAGATGTAGC
* *
14438033 CTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGT
1 CTTACAAGTAATCAAATATCGATGCCA-TATCCCAGACAGGGT
* * *
14438076 CTTACAAGAAATCATATA-CGATGCCGATATCCCAGACATGGT
1 CTTACAAGTAATCAAATATCGATGCC-ATATCCCAGACAGGGT
* *
14438118 CTTACACGTAAATCTCAA-ATCGATGCCA
1 CTTACAAGT-AATC-AAATATCGATGCCA
14438146 ACGACCCAGA
Statistics
Matches: 57, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
42 27 0.47
43 22 0.39
44 8 0.14
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.25
Consensus pattern (42 bp):
CTTACAAGTAATCAAATATCGATGCCATATCCCAGACAGGGT
Found at i:14447112 original size:25 final size:26
Alignment explanation
Indices: 14447073--14447125 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 26
14447063 GAACATTGAA
*
14447073 AAAAAAGAAACTCAGGTACCTAGTTG
1 AAAAAAGAAACTCAGGTACCAAGTTG
*
14447099 AAAAAA-AAATTCAGGTACCAAGTTG
1 AAAAAAGAAACTCAGGTACCAAGTTG
14447124 AA
1 AA
14447126 CATTGAAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (26 bp):
AAAAAAGAAACTCAGGTACCAAGTTG
Found at i:14449317 original size:103 final size:104
Alignment explanation
Indices: 14449073--14449338 Score: 419
Period size: 103 Copynumber: 2.6 Consensus size: 104
14449063 GTTGTACATA
** *
14449073 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
14449138 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
14449177 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
14449241 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
14449280 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
14449339 AATAACGGTT
Statistics
Matches: 149, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:14456809 original size:103 final size:104
Alignment explanation
Indices: 14456565--14456830 Score: 419
Period size: 103 Copynumber: 2.6 Consensus size: 104
14456555 GTTGTACATA
** *
14456565 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
14456630 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
14456669 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
14456733 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
14456772 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
14456831 AATAACGGTT
Statistics
Matches: 149, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:14466115 original size:28 final size:27
Alignment explanation
Indices: 14466071--14466131 Score: 104
Period size: 28 Copynumber: 2.2 Consensus size: 27
14466061 GTAACAAAAC
*
14466071 AATAATGAATTCGATAATTTAAGTATG
1 AATAATGAATTCAATAATTTAAGTATG
14466098 AAATAATGAATTCAATAATTTAAGTATG
1 -AATAATGAATTCAATAATTTAAGTATG
14466126 AATAAT
1 AATAAT
14466132 ACAAGCAACA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 6 0.19
28 26 0.81
ACGTcount: A:0.49, C:0.03, G:0.11, T:0.36
Consensus pattern (27 bp):
AATAATGAATTCAATAATTTAAGTATG
Found at i:14468653 original size:87 final size:87
Alignment explanation
Indices: 14468505--14469181 Score: 1137
Period size: 87 Copynumber: 7.8 Consensus size: 87
14468495 GCTAGTACTT
* * *
14468505 AGGAAGGCAAGATCTGCTATCTTTAACCAGC-CCACTGCAACTGATGGAGGCAAGGCTTTGTTTT
1 AGGAAGGCAAGATCTGATGTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
* *
14468569 TGATCTGCTTCGCTATTAACGC
66 CGATCTGCTTCGCTGTTAACGC
*
14468591 AGGAAGGCAAGATCT-ACTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTT
1 AGGAAGGCAAGATCTGA-TGTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTT
* *
14468655 TCGATCTGCTTTGTTGTTAACGC
65 TCGATCTGCTTCGCTGTTAACGC
14468678 AGGAAGGCAAGATCTGATGTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
1 AGGAAGGCAAGATCTGATGTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
* *
14468743 CGATCTGCTTTGTTGTTAACGC
66 CGATCTGCTTCGCTGTTAACGC
*
14468765 AGGAAGGCAAGATCTGATGTCTTTAACCAGCTCCACTGCAACCAATGGAGGCAAGGCTTTGTTTT
1 AGGAAGGCAAGATCTGATGTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
*
14468830 CGATCTGCTTCGCTGGTAACGC
66 CGATCTGCTTCGCTGTTAACGC
* * * *
14468852 AAGAAGGCAAGATCTGCTATCTTTAACCAGCTCCATTGCAACCGATGGAGGCAAGGCTTTGTTTT
1 AGGAAGGCAAGATCTGATGTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
14468917 CGATCTGCTTCGCTGTTAACGC
66 CGATCTGCTTCGCTGTTAACGC
* *
14468939 AGGAAGGCAATATCTGCT-TCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
1 AGGAAGGCAAGATCTGATGTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
14469003 CGATCTGCTTCGCTGTTAACGC
66 CGATCTGCTTCGCTGTTAACGC
*
14469025 AGGAAGGCAAGATCTGATGTCTTTAACCAGCTCCACTGCAACCAATGGAGGCAAGGCTTTGTTTT
1 AGGAAGGCAAGATCTGATGTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
14469090 CGATCTGCTTCGCTGTTAACGC
66 CGATCTGCTTCGCTGTTAACGC
*
14469112 AGGAAGGCAAGATCTGATGT-TTTAACCAGCTCCACTGCAAACGATGGAGGCAAGGCTTTGTTTT
1 AGGAAGGCAAGATCTGATGTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
14469176 CGATCT
66 CGATCT
14469182 TCATTTATCT
Statistics
Matches: 562, Mismatches: 25, Indels: 8
0.94 0.04 0.01
Matches are distributed among these distances:
86 160 0.28
87 401 0.71
88 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (87 bp):
AGGAAGGCAAGATCTGATGTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
CGATCTGCTTCGCTGTTAACGC
Found at i:14468688 original size:43 final size:43
Alignment explanation
Indices: 14468639--14468775 Score: 111
Period size: 43 Copynumber: 3.2 Consensus size: 43
14468629 CAACCGATGG
14468639 AGGCAAGGCTTTGTTTTCGATCTGCTTTGTTGTTAACGCAGGA
1 AGGCAAGGCTTTGTTTTCGATCTGCTTTGTTGTTAACGCAGGA
* * * * * **** *
14468682 AGGCAAGATCTGATGTCTTT-AACCAGCTCCACTG-CAAC-CGATGG-
1 AGGCAAG-GCT-TTGT-TTTCGATCTGCTTTGTTGTTAACGC-A-GGA
14468726 AGGCAAGGCTTTGTTTTCGATCTGCTTTGTTGTTAACGCAGGA
1 AGGCAAGGCTTTGTTTTCGATCTGCTTTGTTGTTAACGCAGGA
14468769 AGGCAAG
1 AGGCAAG
14468776 ATCTGATGTC
Statistics
Matches: 65, Mismatches: 20, Indels: 18
0.63 0.19 0.17
Matches are distributed among these distances:
41 3 0.05
42 12 0.18
43 21 0.32
44 14 0.22
45 12 0.18
46 3 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (43 bp):
AGGCAAGGCTTTGTTTTCGATCTGCTTTGTTGTTAACGCAGGA
Found at i:14469050 original size:173 final size:174
Alignment explanation
Indices: 14468505--14469181 Score: 1137
Period size: 173 Copynumber: 3.9 Consensus size: 174
14468495 GCTAGTACTT
* *
14468505 AGGAAGGCAAGATCTGCTATCTTTAACCAGC-CCACTGCAACTGATGGAGGCAAGGCTTTGTTTT
1 AGGAAGGCAAGATCTGATATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
* * *
14468569 TGATCTGCTTCGCTATTAACGCAGGAAGGCAAGATCT-ACTATCTTTAACCAGCTCCACTGCAAC
66 CGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGA-TGTCTTTAACCAGCTCCACTGCAAC
* *
14468633 CGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTTGTTGTTAACGC
130 CGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGC
*
14468678 AGGAAGGCAAGATCTGATGTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
1 AGGAAGGCAAGATCTGATATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
* *
14468743 CGATCTGCTTTGTTGTTAACGCAGGAAGGCAAGATCTGATGTCTTTAACCAGCTCCACTGCAACC
66 CGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGATGTCTTTAACCAGCTCCACTGCAACC
* *
14468808 AATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGGTAACGC
131 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGC
* * *
14468852 AAGAAGGCAAGATCTGCTATCTTTAACCAGCTCCATTGCAACCGATGGAGGCAAGGCTTTGTTTT
1 AGGAAGGCAAGATCTGATATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
* *
14468917 CGATCTGCTTCGCTGTTAACGCAGGAAGGCAATATCTGCT-TCTTTAACCAGCTCCACTGCAACC
66 CGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGATGTCTTTAACCAGCTCCACTGCAACC
14468981 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGC
131 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGC
* *
14469025 AGGAAGGCAAGATCTGATGTCTTTAACCAGCTCCACTGCAACCAATGGAGGCAAGGCTTTGTTTT
1 AGGAAGGCAAGATCTGATATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
*
14469090 CGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGATGT-TTTAACCAGCTCCACTGCAAAC
66 CGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGATGTCTTTAACCAGCTCCACTGCAACC
14469154 GATGGAGGCAAGGCTTTGTTTTCGATCT
131 GATGGAGGCAAGGCTTTGTTTTCGATCT
14469182 TCATTTATCT
Statistics
Matches: 471, Mismatches: 30, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
173 242 0.51
174 228 0.48
175 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (174 bp):
AGGAAGGCAAGATCTGATATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
CGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGATGTCTTTAACCAGCTCCACTGCAACC
GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGC
Found at i:14470825 original size:13 final size:13
Alignment explanation
Indices: 14470807--14470854 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
14470797 TGGCCTCTCC
14470807 TTTTCTTTTTCCT
1 TTTTCTTTTTCCT
14470820 TTTTCTTTTT-CT
1 TTTTCTTTTTCCT
*
14470832 TTTCTCTTTTTCAT
1 TTT-TCTTTTTCCT
*
14470846 TTTTATTTT
1 TTTTCTTTT
14470855 GACTTTGATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
12 5 0.16
13 22 0.71
14 4 0.13
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTCTTTTTCCT
Found at i:14470828 original size:5 final size:6
Alignment explanation
Indices: 14470807--14470854 Score: 60
Period size: 6 Copynumber: 7.5 Consensus size: 6
14470797 TGGCCTCTCC
*
14470807 TTTTCT TTTTCCT TTTTCT TTTTCT TTTCTCT TTTTCAT TTTTAT TTT
1 TTTTCT TTTT-CT TTTTCT TTTTCT TTT-TCT TTTTC-T TTTTCT TTT
14470855 GACTTTGATT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
6 21 0.55
7 17 0.45
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTCT
Found at i:14479980 original size:20 final size:19
Alignment explanation
Indices: 14479932--14479981 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
14479922 CAAAGATAAA
14479932 AAAAAAGAAAATAAAAAAAT
1 AAAAAAG-AAATAAAAAAAT
***
14479952 AATGCAGAAATAAAAAAGAT
1 AAAAAAGAAATAAAAAA-AT
14479972 AAAAAAGAAA
1 AAAAAAGAAA
14479982 CTCTATTGTA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.78, C:0.02, G:0.10, T:0.10
Consensus pattern (19 bp):
AAAAAAGAAATAAAAAAAT
Found at i:14481411 original size:29 final size:29
Alignment explanation
Indices: 14481378--14481528 Score: 107
Period size: 29 Copynumber: 5.2 Consensus size: 29
14481368 TTTCACTTCT
14481378 AAGCTTAAATTCTAACAATTTAACACCAA
1 AAGCTTAAATTCTAACAATTTAACACCAA
* * ** *
14481407 AAGCTTCAAGCATTC-ATC-ATTTCACTTC-T
1 AAGCTT-AA--ATTCTAACAATTTAACACCAA
14481436 AAGCTTAAATTCTAACAATTTAACACCAA
1 AAGCTTAAATTCTAACAATTTAACACCAA
* * ** *
14481465 AAGCTTCAAGCATTC-ATC-ATTTCACTTC-T
1 AAGCTT-AA--ATTCTAACAATTTAACACCAA
*
14481494 AAGCTTAAATTCTAACAATTTAGCACCAA
1 AAGCTTAAATTCTAACAATTTAACACCAA
14481523 AAGCTT
1 AAGCTT
14481529 CAAGCAGTCA
Statistics
Matches: 89, Mismatches: 21, Indels: 24
0.66 0.16 0.18
Matches are distributed among these distances:
26 8 0.09
27 4 0.04
28 17 0.19
29 30 0.34
30 18 0.20
31 4 0.04
32 8 0.09
ACGTcount: A:0.39, C:0.23, G:0.06, T:0.32
Consensus pattern (29 bp):
AAGCTTAAATTCTAACAATTTAACACCAA
Found at i:14481458 original size:58 final size:58
Alignment explanation
Indices: 14481368--14481541 Score: 330
Period size: 58 Copynumber: 3.0 Consensus size: 58
14481358 ACTAGTGCTT
14481368 TTTCACTTCTAAGCTTAAATTCTAACAATTTAACACCAAAAGCTTCAAGCATTCATCA
1 TTTCACTTCTAAGCTTAAATTCTAACAATTTAACACCAAAAGCTTCAAGCATTCATCA
14481426 TTTCACTTCTAAGCTTAAATTCTAACAATTTAACACCAAAAGCTTCAAGCATTCATCA
1 TTTCACTTCTAAGCTTAAATTCTAACAATTTAACACCAAAAGCTTCAAGCATTCATCA
* *
14481484 TTTCACTTCTAAGCTTAAATTCTAACAATTTAGCACCAAAAGCTTCAAGCAGTCATCA
1 TTTCACTTCTAAGCTTAAATTCTAACAATTTAACACCAAAAGCTTCAAGCATTCATCA
14481542 ATGACATCTT
Statistics
Matches: 114, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 114 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (58 bp):
TTTCACTTCTAAGCTTAAATTCTAACAATTTAACACCAAAAGCTTCAAGCATTCATCA
Found at i:14484358 original size:46 final size:46
Alignment explanation
Indices: 14484291--14485243 Score: 1789
Period size: 46 Copynumber: 20.6 Consensus size: 46
14484281 TAAGTGTAGC
14484291 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
14484337 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
14484383 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
14484429 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
14484475 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
14484521 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
14484567 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
14484613 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
14484659 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
14484705 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
14484751 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
14484797 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
14484843 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
14484889 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
14484935 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
14484981 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
14485027 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
14485073 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
* **
14485119 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
* * *
14485165 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
*
14485217 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCTCTTGATCAGA
14485244 AGTACTCAAA
Statistics
Matches: 891, Mismatches: 10, Indels: 12
0.98 0.01 0.01
Matches are distributed among these distances:
46 850 0.95
48 1 0.00
50 1 0.00
52 39 0.04
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (46 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
Found at i:14489782 original size:17 final size:16
Alignment explanation
Indices: 14489746--14489784 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
14489736 GAACGCAAGC
*
14489746 TATTCTTAAATAGAGT
1 TATTCTTAAAAAGAGT
*
14489762 TATTCTTAAACAAGGGT
1 TATTCTTAAA-AAGAGT
14489779 TATTCT
1 TATTCT
14489785 GACATGTTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.44
Consensus pattern (16 bp):
TATTCTTAAAAAGAGT
Found at i:14490937 original size:21 final size:23
Alignment explanation
Indices: 14490906--14490950 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
14490896 CAATAGCTTA
14490906 AATAATAACTTTT-AAATAATTC
1 AATAATAACTTTTGAAATAATTC
*
14490928 AATAA-AACTTTTGAAATAGTTC
1 AATAATAACTTTTGAAATAATTC
14490950 A
1 A
14490951 GTGACCAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.49, C:0.09, G:0.04, T:0.38
Consensus pattern (23 bp):
AATAATAACTTTTGAAATAATTC
Found at i:14504108 original size:25 final size:25
Alignment explanation
Indices: 14504019--14504108 Score: 101
Period size: 25 Copynumber: 3.6 Consensus size: 25
14504009 ATTCATGTAT
* * * *
14504019 GCTCATACGAGCTATGAATCAGTAT
1 GCTCATACGAGCTGTAAATCAGGAA
*
14504044 GCTC-TCACGAGCTGCAAATCAGGAA
1 GCTCAT-ACGAGCTGTAAATCAGGAA
* *
14504069 GCTCATACAAGCTGTAAATCGGGAA
1 GCTCATACGAGCTGTAAATCAGGAA
14504094 GCTCATACGAGCTGT
1 GCTCATACGAGCTGT
14504109 GGTATGTCCG
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
24 1 0.02
25 52 0.96
26 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.22
Consensus pattern (25 bp):
GCTCATACGAGCTGTAAATCAGGAA
Found at i:14505956 original size:28 final size:28
Alignment explanation
Indices: 14505856--14505956 Score: 64
Period size: 27 Copynumber: 3.4 Consensus size: 28
14505846 AAATTTGTTT
14505856 ATATTTGTAAATAATTATTTACTTTTT-TTAG
1 ATATTT-TAAATAATT-TTTA-TTTTTATT-G
* * * *
14505887 ATTTTTTTAATTTAATTTTTTATTTTAATTTC
1 A-TATTTTAA-ATAA-TTTTTATTTTTA-TTG
*
14505919 ATA-TCT-AATAATTTTTATTTTTATTG
1 ATATTTTAAATAATTTTTATTTTTATTG
14505945 ATATTTTAAATA
1 ATATTTTAAATA
14505957 CAGATAACAT
Statistics
Matches: 53, Mismatches: 10, Indels: 17
0.66 0.12 0.21
Matches are distributed among these distances:
26 5 0.09
27 13 0.25
28 7 0.13
29 1 0.02
30 2 0.04
31 9 0.17
32 12 0.23
33 4 0.08
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (28 bp):
ATATTTTAAATAATTTTTATTTTTATTG
Found at i:14520778 original size:20 final size:20
Alignment explanation
Indices: 14520742--14520779 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14520732 ATGGATAGAT
14520742 TTTTATATTATTTTTTAATA
1 TTTTATATTATTTTTTAATA
14520762 TTTTA-ATTATTTATTTAA
1 TTTTATATTATTT-TTTAA
14520780 GTAGATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTATATTATTTTTTAATA
Found at i:14523703 original size:29 final size:28
Alignment explanation
Indices: 14523639--14523705 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 28
14523629 ATTAAAAAGA
14523639 GACTAAAATTGATCAATTCAAAAAGTATAG
1 GACTAAAATTGATCAATT--AAAAGTATAG
*
14523669 GAACTAAAATTGATCAAATT-AAAGTATAAT
1 G-ACTAAAATTGATC-AATTAAAAGTAT-AG
14523699 GACTAAA
1 GACTAAA
14523706 TCCACAACTT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
29 13 0.39
30 3 0.09
31 13 0.39
32 4 0.12
ACGTcount: A:0.52, C:0.09, G:0.12, T:0.27
Consensus pattern (28 bp):
GACTAAAATTGATCAATTAAAAGTATAG
Found at i:14526010 original size:17 final size:15
Alignment explanation
Indices: 14525990--14526027 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
14525980 CATGGTCTTT
*
14525990 TTCTTCCTC-TTCTC
1 TTCTTCTTCTTTCTC
14526004 TTCTTCTT-TTTCTC
1 TTCTTCTTCTTTCTC
14526018 TTCTTCTTCT
1 TTCTTCTTCT
14526028 ACTGCCCAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 20 0.95
15 1 0.05
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (15 bp):
TTCTTCTTCTTTCTC
Found at i:14526024 original size:14 final size:14
Alignment explanation
Indices: 14525999--14526025 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14525989 TTTCTTCCTC
14525999 TTCTCTTCTTCTTT
1 TTCTCTTCTTCTTT
14526013 TTCTCTTCTTCTT
1 TTCTCTTCTTCTT
14526026 CTACTGCCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (14 bp):
TTCTCTTCTTCTTT
Found at i:14526627 original size:19 final size:19
Alignment explanation
Indices: 14526605--14526653 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
14526595 CTATCTTTTT
**
14526605 TTTTTTGTATTTTCTTTGA
1 TTTTTTGTATCATCTTTGA
*
14526624 TTTTTCTCT-TCATCTTTGA
1 TTTTT-TGTATCATCTTTGA
14526643 TTTTTTGTATC
1 TTTTTTGTATC
14526654 GGCACCCGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
18 2 0.08
19 20 0.83
20 2 0.08
ACGTcount: A:0.10, C:0.12, G:0.08, T:0.69
Consensus pattern (19 bp):
TTTTTTGTATCATCTTTGA
Found at i:14528762 original size:15 final size:15
Alignment explanation
Indices: 14528742--14528772 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
14528732 TTGATCTTTC
14528742 TAGTATTATATATTA
1 TAGTATTATATATTA
14528757 TAGTATTATATATTA
1 TAGTATTATATATTA
14528772 T
1 T
14528773 GATTTTAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (15 bp):
TAGTATTATATATTA
Found at i:14528833 original size:17 final size:17
Alignment explanation
Indices: 14528813--14528847 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
14528803 ATATTAAGAA
14528813 TTTTATTAAATTATATT
1 TTTTATTAAATTATATT
14528830 TTTTATTAAATTATATT
1 TTTTATTAAATTATATT
14528847 T
1 T
14528848 AAAAATAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTATTAAATTATATT
Found at i:14528898 original size:113 final size:114
Alignment explanation
Indices: 14528753--14529113 Score: 493
Period size: 122 Copynumber: 3.1 Consensus size: 114
14528743 AGTATTATAT
*
14528753 ATTATAGTATTATA-TA-TTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTT
1 ATTATAGTTTTATAGTATTTATGATTTTAGTAAATTCAT-TAAGAATATTTAATATTAAGAATTT
* *
14528816 TATTAAATTATAT-TTTTTATTAAATTATATTTAAAAATAATTAATTTAA
65 TATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAA
14528865 ATTATA-TTTTATAGTATTTATGATTTTAGTAAATTC--TAAGAATATTTAATATTAAGAATTTT
1 ATTATAGTTTTATAGTATTTATGATTTTAGTAAATTCATTAAGAATATTTAATATTAAGAATTTT
* ** *
14528927 ATTAAATAATATATTTTTACCAAATTATATTTTTAATAATTATTATTTTAA
66 ATTAAATTATATATTTTTATTAAATTATA--TTTAATAATAATTATTTTAA
* * *
14528978 ATTATATTTTATAATATTATATATTATAATTTTAGTAAATTCATTTAAGAATATTTAATATTAAG
1 ATTATAGTTT-T-ATA--GTAT-TTATGATTTTAGTAAATTCA-TTAAGAATATTTAATATTAAG
14529043 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAA
60 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAA
*
14529098 ATTATA-TTATATAGTA
1 ATTATAGTTTTATAGTA
14529114 AGTATGACTC
Statistics
Matches: 220, Mismatches: 15, Indels: 25
0.85 0.06 0.10
Matches are distributed among these distances:
110 37 0.17
111 20 0.09
112 8 0.04
113 42 0.19
114 3 0.01
115 3 0.01
116 3 0.01
117 3 0.01
118 4 0.02
119 20 0.09
120 25 0.11
122 52 0.24
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (114 bp):
ATTATAGTTTTATAGTATTTATGATTTTAGTAAATTCATTAAGAATATTTAATATTAAGAATTTT
ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAA
Found at i:14528967 original size:15 final size:15
Alignment explanation
Indices: 14528931--14528999 Score: 60
Period size: 15 Copynumber: 4.7 Consensus size: 15
14528921 AATTTTATTA
14528931 AATAA-TATATTTTT
1 AATAATTATATTTTT
14528945 ACCA-AATTATATTTTT
1 A--ATAATTATATTTTT
14528961 AATAATTAT-TATTTT
1 AATAATTATAT-TTTT
14528976 -A-AATTATATTTTAT
1 AATAATTATATTTT-T
14528990 AAT-ATTATAT
1 AATAATTATAT
14529000 ATTATAATTT
Statistics
Matches: 46, Mismatches: 0, Indels: 17
0.73 0.00 0.27
Matches are distributed among these distances:
13 9 0.20
14 6 0.13
15 20 0.43
16 11 0.24
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (15 bp):
AATAATTATATTTTT
Found at i:14528979 original size:28 final size:29
Alignment explanation
Indices: 14528948--14529002 Score: 87
Period size: 28 Copynumber: 1.9 Consensus size: 29
14528938 TATTTTTACC
14528948 AAATTATATTTT-TAATAATTAT-TATTTT
1 AAATTATATTTTATAAT-ATTATATATTTT
14528976 AAATTATATTTTATAATATTATATATT
1 AAATTATATTTTATAATATTATATATT
14529003 ATAATTTTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
28 17 0.68
29 8 0.32
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (29 bp):
AAATTATATTTTATAATATTATATATTTT
Found at i:14528980 original size:13 final size:14
Alignment explanation
Indices: 14528957--14529008 Score: 56
Period size: 13 Copynumber: 3.7 Consensus size: 14
14528947 CAAATTATAT
14528957 TTTTAATAATTATTA
1 TTTT-ATAATTATTA
14528972 TTTTA-AATTA-TA
1 TTTTATAATTATTA
14528984 TTTTATAA-TATTA
1 TTTTATAATTATTA
14528997 TATATTATAATT
1 T-T-TTATAATT
14529009 TTAGTAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
12 9 0.28
13 10 0.31
14 2 0.06
15 10 0.31
16 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTTATAATTATTA
Found at i:14529004 original size:15 final size:15
Alignment explanation
Indices: 14528950--14529007 Score: 59
Period size: 15 Copynumber: 4.0 Consensus size: 15
14528940 TTTTTACCAA
*
14528950 ATTATAT-TTTTAAT
1 ATTATATATTATAAT
*
14528964 AATTAT-TATTTTAA-
1 -ATTATATATTATAAT
*
14528978 ATTATATTTTATAAT
1 ATTATATATTATAAT
14528993 ATTATATATTATAAT
1 ATTATATATTATAAT
14529008 TTTAGTAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
13 5 0.14
14 7 0.19
15 25 0.68
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
ATTATATATTATAAT
Found at i:14529017 original size:38 final size:39
Alignment explanation
Indices: 14528975--14529060 Score: 97
Period size: 38 Copynumber: 2.3 Consensus size: 39
14528965 ATTATTATTT
* * *
14528975 TAAATTATATTTTATAATA-TTATATATT-ATAATTTTAG
1 TAAATTATATTTAAGAATATTTA-ATATTAAGAATTTTAG
* *
14529013 TAAATT-CATTTAAGAATATTTAATATTAAGAATTTTAT
1 TAAATTATATTTAAGAATATTTAATATTAAGAATTTTAG
14529051 TAAATTATAT
1 TAAATTATAT
14529061 ATTTTTATTA
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
37 14 0.36
38 23 0.59
39 2 0.05
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.51
Consensus pattern (39 bp):
TAAATTATATTTAAGAATATTTAATATTAAGAATTTTAG
Found at i:14543722 original size:19 final size:19
Alignment explanation
Indices: 14543700--14543736 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14543690 AATTAAAAAT
14543700 ATTTTAAAAATATAAATTA
1 ATTTTAAAAATATAAATTA
**
14543719 ATTTTGTAAATATAAATT
1 ATTTTAAAAATATAAATT
14543737 TGTGGATAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (19 bp):
ATTTTAAAAATATAAATTA
Found at i:14544310 original size:22 final size:22
Alignment explanation
Indices: 14544279--14544327 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
14544269 TATAAAAGTA
*
14544279 AAAAAGATTA-AATATATATTTT
1 AAAAAGATTACAATAAAT-TTTT
14544301 AGAAAA-ATTACAATAAATTTTT
1 A-AAAAGATTACAATAAATTTTT
14544323 AAAAA
1 AAAAA
14544328 TATTTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
21 4 0.17
22 10 0.42
23 10 0.42
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (22 bp):
AAAAAGATTACAATAAATTTTT
Found at i:14548196 original size:16 final size:16
Alignment explanation
Indices: 14548177--14548207 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14548167 ATATTAATTT
*
14548177 TATTTAATCTTAAAAA
1 TATTTAATATTAAAAA
14548193 TATTTAATATTAAAA
1 TATTTAATATTAAAA
14548208 CAATACAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
TATTTAATATTAAAAA
Found at i:14552226 original size:23 final size:23
Alignment explanation
Indices: 14552199--14552245 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
14552189 AGTAATTGAA
14552199 TTTAACTAAACAAATTTAATTCT
1 TTTAACTAAACAAATTTAATTCT
14552222 TTTAACTAAACAAATTTAATTCT
1 TTTAACTAAACAAATTTAATTCT
14552245 T
1 T
14552246 ACTGTTTGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.43, C:0.13, G:0.00, T:0.45
Consensus pattern (23 bp):
TTTAACTAAACAAATTTAATTCT
Found at i:14569662 original size:6 final size:6
Alignment explanation
Indices: 14569646--14569680 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
14569636 TGGATCCAAA
*
14569646 GGAAA- GGAAAG GGAAAG GGAAAG GGAAAG CGAAAG
1 GGAAAG GGAAAG GGAAAG GGAAAG GGAAAG GGAAAG
14569681 AAGGAAAGGC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.51, C:0.03, G:0.46, T:0.00
Consensus pattern (6 bp):
GGAAAG
Found at i:14570209 original size:3 final size:3
Alignment explanation
Indices: 14570194--14570230 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
14570184 ATATTGTGCT
* *
14570194 TTA TTA ATA TTA TTA TTA TCA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
14570231 AACTTGATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:14570429 original size:21 final size:20
Alignment explanation
Indices: 14570385--14570449 Score: 77
Period size: 19 Copynumber: 3.5 Consensus size: 20
14570375 TTTATGATGT
14570385 TATA-ATTTTTATATTTA-A
1 TATATATTTTTATATTTATA
*
14570403 -ATAT-TTTTATAAATTTATA
1 TATATATTTT-TATATTTATA
14570422 T-TATATTTTTATATTTATA
1 TATATATTTTTATATTTATA
14570441 TATATATTT
1 TATATATTT
14570450 CAAAATAACA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
17 7 0.18
18 7 0.18
19 14 0.36
20 11 0.28
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
TATATATTTTTATATTTATA
Found at i:14571081 original size:18 final size:18
Alignment explanation
Indices: 14571058--14571095 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
14571048 TTTCGTGTAG
14571058 AACCGAATT-AATTCGGTT
1 AACCG-ATTGAATTCGGTT
14571076 AACCGATTGAATTCGGTT
1 AACCGATTGAATTCGGTT
14571094 AA
1 AA
14571096 TTGGTTGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 3 0.16
18 16 0.84
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (18 bp):
AACCGATTGAATTCGGTT
Found at i:14579697 original size:19 final size:19
Alignment explanation
Indices: 14579673--14579709 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
14579663 TTTAAATTTT
14579673 TTGTATGAATATTGTAATG
1 TTGTATGAATATTGTAATG
14579692 TTGTATGAATATTGTAAT
1 TTGTATGAATATTGTAAT
14579710 TATTTTATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.19, T:0.49
Consensus pattern (19 bp):
TTGTATGAATATTGTAATG
Found at i:14579697 original size:41 final size:40
Alignment explanation
Indices: 14579651--14579814 Score: 156
Period size: 41 Copynumber: 4.0 Consensus size: 40
14579641 GATTAGAATT
*
14579651 TTGTATGAATATTTTAAATTTTTTGTATGAATATTGTAATG
1 TTGTATGAATATTGT-AATTTTTTGTATGAATATTGTAATG
* *
14579692 TTGTATGAATATTGTAATTATTTTATAATTAA-ATTTGTATTTATAG
1 TTGTATGAATATTGTAATT-TTTTGT-ATGAATA-TTGTA---AT-G
* * *
14579738 TT-T-TGGAT-TAGTAATTTTTTGTATGAATATTGTAATT
1 TTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATG
*
14579775 TTGTATGAATATTATAAATTTTTTGTATGAATATTGTAAT
1 TTGTATGAATATTGT-AATTTTTTGTATGAATATTGTAAT
14579815 AATATTATAG
Statistics
Matches: 100, Mismatches: 11, Indels: 24
0.74 0.08 0.18
Matches are distributed among these distances:
37 2 0.02
38 3 0.03
39 4 0.04
40 6 0.06
41 53 0.53
42 15 0.15
43 7 0.07
44 4 0.04
45 3 0.03
46 3 0.03
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.54
Consensus pattern (40 bp):
TTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATG
Found at i:14579897 original size:49 final size:49
Alignment explanation
Indices: 14579763--14579975 Score: 304
Period size: 49 Copynumber: 4.3 Consensus size: 49
14579753 TTTTTGTATG
* *
14579763 AATATTGTAATTTTGTATGAATATTATAAATTTTTTGTATGAATATTGT
1 AATATTGTAATTTTGTATGAATATTACAATTTTTTTGTATGAATATTGT
*
14579812 AATAATAT-TATAGTTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGT
1 AAT-AT-TGTA-A-TTTTGTATGAATATTACAATTTTTTTGTATGAATATTGT
* * *
14579864 AATTTTGTAATTTTGTATGAATATTA-TATTTTTTTGTATGAATGTTGT
1 AATATTGTAATTTTGTATGAATATTACAATTTTTTTGTATGAATATTGT
* *
14579912 AATATTATAATTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGT
1 AATATTGTAATTTTGTATGAATATTACAATTTTTTTGTATGAATATTGT
14579961 AATATTGTAATTTTG
1 AATATTGTAATTTTG
14579976 CAATTTTTAT
Statistics
Matches: 145, Mismatches: 13, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
48 43 0.30
49 52 0.36
50 6 0.04
51 5 0.03
52 39 0.27
ACGTcount: A:0.32, C:0.01, G:0.13, T:0.54
Consensus pattern (49 bp):
AATATTGTAATTTTGTATGAATATTACAATTTTTTTGTATGAATATTGT
Found at i:14579936 original size:19 final size:19
Alignment explanation
Indices: 14579912--14579969 Score: 53
Period size: 22 Copynumber: 2.9 Consensus size: 19
14579902 TGAATGTTGT
14579912 AATATTATAATTTTGTATG
1 AATATTATAATTTTGTATG
**
14579931 AATATTGCAATTTTTTTGTATG
1 AATATT---ATAATTTTGTATG
* *
14579953 AATATTGTAATATTGTA
1 AATATTATAATTTTGTA
14579970 ATTTTGCAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
19 13 0.43
22 17 0.57
ACGTcount: A:0.34, C:0.02, G:0.12, T:0.52
Consensus pattern (19 bp):
AATATTATAATTTTGTATG
Found at i:14579940 original size:97 final size:99
Alignment explanation
Indices: 14579763--14579975 Score: 358
Period size: 97 Copynumber: 2.2 Consensus size: 99
14579753 TTTTTGTATG
*
14579763 AATATTGTAATTTTGTATGAATATTATAAATTTTTTGTATGAATATTGTAATAATATTATAGTTT
1 AATATTGTAATTTTGTATGAATATTATAAATTTTTTGTATGAATATTG--ATAATATTATAATTT
14579828 TGTATGAATATTGCAATTTTTTTGTATGAATATTGT
64 TGTATGAATATTGCAATTTTTTTGTATGAATATTGT
* * *
14579864 AATTTTGTAATTTTGTATGAATATTAT-ATTTTTTTGTATGAATGTTG-TAATATTATAATTTTG
1 AATATTGTAATTTTGTATGAATATTATAAATTTTTTGTATGAATATTGATAATATTATAATTTTG
14579927 TATGAATATTGCAATTTTTTTGTATGAATATTGT
66 TATGAATATTGCAATTTTTTTGTATGAATATTGT
14579961 AATATTGTAATTTTG
1 AATATTGTAATTTTG
14579976 CAATTTTTAT
Statistics
Matches: 107, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
97 63 0.59
100 18 0.17
101 26 0.24
ACGTcount: A:0.32, C:0.01, G:0.13, T:0.54
Consensus pattern (99 bp):
AATATTGTAATTTTGTATGAATATTATAAATTTTTTGTATGAATATTGATAATATTATAATTTTG
TATGAATATTGCAATTTTTTTGTATGAATATTGT
Found at i:14580508 original size:36 final size:35
Alignment explanation
Indices: 14580451--14580521 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 35
14580441 TGTACAATTT
*
14580451 TATCCCCCCTTAAAATAGTGGACAAACCCAACAGA
1 TATCCCCCCTTAAAACAGTGGACAAACCCAACAGA
*
14580486 TATCCCCCACTTAAAACGGTGGACAAACCCAACAGA
1 TATCCCCC-CTTAAAACAGTGGACAAACCCAACAGA
14580522 AAACTGTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
35 8 0.24
36 25 0.76
ACGTcount: A:0.39, C:0.32, G:0.13, T:0.15
Consensus pattern (35 bp):
TATCCCCCCTTAAAACAGTGGACAAACCCAACAGA
Found at i:14580735 original size:34 final size:36
Alignment explanation
Indices: 14580667--14580741 Score: 109
Period size: 34 Copynumber: 2.1 Consensus size: 36
14580657 CATCTAAAAA
14580667 ATAAGAAGAGACATAAAAGTGAAAACTTAAAAAGACC
1 ATAAGAAGAGA-ATAAAAGTGAAAACTTAAAAAGACC
* *
14580704 ATAAGAAGAG-ATAGAAGTG-AAGCTTAAAAAGACC
1 ATAAGAAGAGAATAAAAGTGAAAACTTAAAAAGACC
14580738 ATAA
1 ATAA
14580742 AATTAACATC
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
34 18 0.50
35 8 0.22
37 10 0.28
ACGTcount: A:0.57, C:0.09, G:0.19, T:0.15
Consensus pattern (36 bp):
ATAAGAAGAGAATAAAAGTGAAAACTTAAAAAGACC
Found at i:14584820 original size:13 final size:14
Alignment explanation
Indices: 14584795--14584826 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
14584785 TGTTTTTTTC
14584795 TTTGTGCTTGTTTG
1 TTTGTGCTTGTTTG
14584809 TTTGTG-TTGTTTG
1 TTTGTGCTTGTTTG
14584822 TTTGT
1 TTTGT
14584827 CCTTCTTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.00, C:0.03, G:0.28, T:0.69
Consensus pattern (14 bp):
TTTGTGCTTGTTTG
Found at i:14587324 original size:21 final size:21
Alignment explanation
Indices: 14587300--14587352 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
14587290 CATTGTTTCT
* * *
14587300 AATCTCACTGCTATAGTATCC
1 AATCTCACCGCTACAGTAACC
* *
14587321 AATCTCTCCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
14587342 AATCTCACCGC
1 AATCTCACCGC
14587353 CACCGCTATT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.28, C:0.34, G:0.09, T:0.28
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:14604843 original size:19 final size:18
Alignment explanation
Indices: 14604815--14604854 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
14604805 CACCATTTTG
14604815 TTTGCTAATCCATTTCCC
1 TTTGCTAATCCATTTCCC
*
14604833 TTTGTCTAATCCATTTTCC
1 TTTG-CTAATCCATTTCCC
14604852 TTT
1 TTT
14604855 TACTGGGTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.15, C:0.28, G:0.05, T:0.53
Consensus pattern (18 bp):
TTTGCTAATCCATTTCCC
Found at i:14605788 original size:52 final size:51
Alignment explanation
Indices: 14605710--14605813 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 51
14605700 GAATACCTTG
*
14605710 CCAGTGACAAGTTTAAGCCACAAGTGGGCCATAAAGAATCGTCTACTTCAA
1 CCAGTGACAAGTTTAAGCCACAAGTGGGCCATAAACAATCGTCTACTTCAA
14605761 NCCAGTGACAAGTTTAAGCCACAAGTGGGCCATAAACAATCGTCTACTTCAA
1 -CCAGTGACAAGTTTAAGCCACAAGTGGGCCATAAACAATCGTCTACTTCAA
14605813 C
1 C
14605814 AGCTGAACCA
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 1 0.02
52 50 0.98
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.21
Consensus pattern (51 bp):
CCAGTGACAAGTTTAAGCCACAAGTGGGCCATAAACAATCGTCTACTTCAA
Found at i:14608838 original size:27 final size:28
Alignment explanation
Indices: 14608775--14608853 Score: 70
Period size: 27 Copynumber: 2.7 Consensus size: 28
14608765 TAAGCTATTA
*
14608775 AACTATTAGAAAGTTTCTATTTAAATCACTG
1 AACTATT--AAAGTTT-TTTTTAAATCACTG
* * *
14608806 AGCTATT-AAGTTTTTTTTAAGTCATTG
1 AACTATTAAAGTTTTTTTTAAATCACTG
14608833 AACTATTCAAAAGTTTTTTTT
1 AACTATT--AAAGTTTTTTTT
14608854 TATTTAAGTC
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
27 17 0.43
28 6 0.15
30 11 0.28
31 6 0.15
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.47
Consensus pattern (28 bp):
AACTATTAAAGTTTTTTTTAAATCACTG
Found at i:14609944 original size:42 final size:43
Alignment explanation
Indices: 14609882--14609963 Score: 130
Period size: 42 Copynumber: 1.9 Consensus size: 43
14609872 ACTAATATTG
*
14609882 CAACAAATTTCTGGTGTTAGATTGTATCAAAAGTCTTATTTGA
1 CAACAAATTTCTGGTATTAGATTGTATCAAAAGTCTTATTTGA
**
14609925 CAACAAA-TTCTGGTATTAGATTGTATCAGTAGTCTTATT
1 CAACAAATTTCTGGTATTAGATTGTATCAAAAGTCTTATT
14609964 CCACAGTCGA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
42 29 0.81
43 7 0.19
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (43 bp):
CAACAAATTTCTGGTATTAGATTGTATCAAAAGTCTTATTTGA
Found at i:14613269 original size:19 final size:17
Alignment explanation
Indices: 14613236--14613268 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
14613226 ATATATTTTA
14613236 TTTTTAATCAAATATAC
1 TTTTTAATCAAATATAC
14613253 TTTTTAATCAAATATA
1 TTTTTAATCAAATATA
14613269 TATTAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTTTAATCAAATATAC
Found at i:14625472 original size:5 final size:5
Alignment explanation
Indices: 14625462--14625488 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
14625452 CCACAATCCG
14625462 ACATC ACATC ACATC ACATC ACATC AC
1 ACATC ACATC ACATC ACATC ACATC AC
14625489 TTCCCCTTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.19
Consensus pattern (5 bp):
ACATC
Found at i:14628051 original size:31 final size:31
Alignment explanation
Indices: 14628016--14628075 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
14628006 TCGGTCATGA
* *
14628016 AATTATTAATAATTTTATGATTTAGTCACTC
1 AATTATTAATAAATTTATAATTTAGTCACTC
14628047 AATTATTAATAAATTTATAATTTAGTCAC
1 AATTATTAATAAATTTATAATTTAGTCAC
14628076 CCTCAACGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.40, C:0.08, G:0.05, T:0.47
Consensus pattern (31 bp):
AATTATTAATAAATTTATAATTTAGTCACTC
Found at i:14631673 original size:3 final size:3
Alignment explanation
Indices: 14631656--14631719 Score: 53
Period size: 3 Copynumber: 22.0 Consensus size: 3
14631646 TTTATGCAAT
* * *
14631656 AGA ATA AGA AG- AGA AGA AGA AGA AAA AG- AGA AGGA AGA GGA AG-
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A-GA AGA AGA AGA
* *
14631699 AGG AGG AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA
14631720 GAAAAAAAAT
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
2 6 0.12
3 41 0.82
4 3 0.06
ACGTcount: A:0.61, C:0.00, G:0.38, T:0.02
Consensus pattern (3 bp):
AGA
Found at i:14636207 original size:20 final size:19
Alignment explanation
Indices: 14636142--14636222 Score: 76
Period size: 20 Copynumber: 4.2 Consensus size: 19
14636132 ATTTGATCTT
14636142 AATTCTAAAAAA-ATA-AAGA
1 AATT-TAAAAAATATATAA-A
* *
14636161 AATCTATAAAAATACATAAA
1 AATTTA-AAAAATATATAAA
* *
14636181 TATTTAAAATATATATAATA
1 AATTTAAAAAATATATAA-A
14636201 AATTTAAAAAATATATAAA
1 AATTTAAAAAATATATAAA
14636220 AAT
1 AAT
14636223 AAAAAATGAT
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
18 2 0.04
19 22 0.44
20 24 0.48
21 2 0.04
ACGTcount: A:0.64, C:0.04, G:0.01, T:0.31
Consensus pattern (19 bp):
AATTTAAAAAATATATAAA
Found at i:14636212 original size:9 final size:10
Alignment explanation
Indices: 14636147--14636223 Score: 54
Period size: 10 Copynumber: 7.8 Consensus size: 10
14636137 ATCTTAATTC
*
14636147 TAAAAAAATA
1 TAAAAATATA
*
14636157 -AAGAAATCTA
1 TAA-AAATATA
*
14636167 TAAAAATACA
1 TAAAAATATA
*
14636177 T--AAATATT
1 TAAAAATATA
14636185 TAAAATATATA
1 TAAAA-ATATA
*
14636196 TAATAAATTTA
1 TAA-AAATATA
14636207 -AAAAATATA
1 TAAAAATATA
14636216 TAAAAATA
1 TAAAAATA
14636224 AAAAATGATT
Statistics
Matches: 51, Mismatches: 9, Indels: 14
0.69 0.12 0.19
Matches are distributed among these distances:
8 6 0.12
9 8 0.16
10 22 0.43
11 13 0.25
12 2 0.04
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (10 bp):
TAAAAATATA
Found at i:14636270 original size:25 final size:25
Alignment explanation
Indices: 14636234--14636283 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
14636224 AAAAATGATT
14636234 TTATATTAATATTAAATAT-AAATAA
1 TTATATTAATA-TAAATATCAAATAA
*
14636259 TTATATCT-ATATCAATATCAAATAA
1 TTATAT-TAATATAAATATCAAATAA
14636284 AATAAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
24 6 0.27
25 15 0.68
26 1 0.05
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (25 bp):
TTATATTAATATAAATATCAAATAA
Found at i:14639728 original size:21 final size:21
Alignment explanation
Indices: 14639689--14639728 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14639679 CCAAAGGAAA
*
14639689 GAAAGAATATATAATCTATGT
1 GAAAGAATATATAACCTATGT
*
14639710 GAAAGAATATATGACCTAT
1 GAAAGAATATATAACCTAT
14639729 TAATGGGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.30
Consensus pattern (21 bp):
GAAAGAATATATAACCTATGT
Found at i:14645158 original size:59 final size:59
Alignment explanation
Indices: 14645083--14645202 Score: 231
Period size: 59 Copynumber: 2.0 Consensus size: 59
14645073 TTAATTTTGC
14645083 TGAACAGACATATCTCATTTCTTTTGTAATTAATGTATTTTAAATATTATGCAAAATTA
1 TGAACAGACATATCTCATTTCTTTTGTAATTAATGTATTTTAAATATTATGCAAAATTA
*
14645142 TGAACCGACATATCTCATTTCTTTTGTAATTAATGTATTTTAAATATTATGCAAAATTA
1 TGAACAGACATATCTCATTTCTTTTGTAATTAATGTATTTTAAATATTATGCAAAATTA
14645201 TG
1 TG
14645203 TTACTTTTAT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.36, C:0.11, G:0.09, T:0.44
Consensus pattern (59 bp):
TGAACAGACATATCTCATTTCTTTTGTAATTAATGTATTTTAAATATTATGCAAAATTA
Found at i:14646373 original size:29 final size:29
Alignment explanation
Indices: 14646340--14646403 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 29
14646330 TAGAGACTTG
*
14646340 ATTAAATT-AGTCCATTTATTATTAAATGA
1 ATTAAATTAAGTCCATTTATTATTAAA-AA
***
14646369 ATT-AATTAAGTTTTTTTATTATTAAAAA
1 ATTAAATTAAGTCCATTTATTATTAAAAA
14646397 ATTAAAT
1 ATTAAAT
14646404 AAAATCAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
28 8 0.28
29 21 0.72
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (29 bp):
ATTAAATTAAGTCCATTTATTATTAAAAA
Found at i:14654574 original size:15 final size:15
Alignment explanation
Indices: 14654554--14654584 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14654544 TTTCCAATTC
14654554 ACCAAGTATCTCCAT
1 ACCAAGTATCTCCAT
*
14654569 ACCAAGTATCTTCAT
1 ACCAAGTATCTCCAT
14654584 A
1 A
14654585 TAAAAAAGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.29, G:0.06, T:0.29
Consensus pattern (15 bp):
ACCAAGTATCTCCAT
Found at i:14656114 original size:30 final size:32
Alignment explanation
Indices: 14656073--14656135 Score: 87
Period size: 30 Copynumber: 2.0 Consensus size: 32
14656063 AGTTTATATA
14656073 TTTATAATTTTTAAA-AAGTT-AAAT-TAAATT
1 TTTATAATTTTTAAAGAA-TTAAAATATAAATT
*
14656103 TTTATATTTTTTAAAGAATTAAAATATAAATT
1 TTTATAATTTTTAAAGAATTAAAATATAAATT
14656135 T
1 T
14656136 ATCATTATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 16 0.55
31 6 0.21
32 7 0.24
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (32 bp):
TTTATAATTTTTAAAGAATTAAAATATAAATT
Found at i:14656137 original size:30 final size:29
Alignment explanation
Indices: 14656067--14656146 Score: 74
Period size: 30 Copynumber: 2.7 Consensus size: 29
14656057 TTGAACAGTT
*
14656067 TATATATTTATAATTTTTAAAAAGTTAAA
1 TATAAATTTATAATTTTTAAAAAGTTAAA
*
14656096 T-TAAATTTTTATATTTTTTAAAGAA-TTAAAA
1 TATAAA--TTTATAATTTTTAAA-AAGTT-AAA
* *
14656127 TATAAATTTATCATTATTAA
1 TATAAATTTATAATTTTTAA
14656147 TTTAAAATGA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
28 3 0.07
29 1 0.02
30 27 0.66
31 6 0.15
32 4 0.10
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (29 bp):
TATAAATTTATAATTTTTAAAAAGTTAAA
Found at i:14660106 original size:21 final size:21
Alignment explanation
Indices: 14660080--14660120 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
14660070 ATCTGCTCAA
* *
14660080 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
14660101 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
14660121 TTGCTCATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:14669082 original size:3 final size:3
Alignment explanation
Indices: 14669074--14669105 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
14669064 ATCACATGTT
14669074 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
14669106 TGGATGTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:14671906 original size:3 final size:3
Alignment explanation
Indices: 14671898--14671923 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
14671888 ATCACATGTT
14671898 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
14671924 TGGATGTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:14685089 original size:23 final size:24
Alignment explanation
Indices: 14685063--14685114 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
14685053 TCTCTCTCTC
* *
14685063 TTTTTCCTCTCTCTCTTT-GTATT
1 TTTTTCCTCTCCCCCTTTGGTATT
* *
14685086 TTTTTTCTCTCCCCCTTTGGTTTT
1 TTTTTCCTCTCCCCCTTTGGTATT
14685110 TTTTT
1 TTTTT
14685115 TTTTTTGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 15 0.62
24 9 0.38
ACGTcount: A:0.02, C:0.25, G:0.06, T:0.67
Consensus pattern (24 bp):
TTTTTCCTCTCCCCCTTTGGTATT
Found at i:14685582 original size:11 final size:11
Alignment explanation
Indices: 14685566--14685590 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14685556 TCCATGCCCT
14685566 AGTATTAGAAG
1 AGTATTAGAAG
14685577 AGTATTAGAAG
1 AGTATTAGAAG
14685588 AGT
1 AGT
14685591 TGTCAAGTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.28, T:0.28
Consensus pattern (11 bp):
AGTATTAGAAG
Found at i:14692940 original size:4 final size:4
Alignment explanation
Indices: 14692931--14692977 Score: 76
Period size: 4 Copynumber: 11.8 Consensus size: 4
14692921 CGTAACACAT
* *
14692931 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC GTAC GTAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
14692978 TGCAATCATA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.47, C:0.23, G:0.04, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:14717067 original size:15 final size:15
Alignment explanation
Indices: 14717043--14717072 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14717033 AAAACTATAA
14717043 AAAAGAAAGAAAAAG
1 AAAAGAAAGAAAAAG
*
14717058 AAAAGGAAGAAAAAG
1 AAAAGAAAGAAAAAG
14717073 CTCACCCTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (15 bp):
AAAAGAAAGAAAAAG
Found at i:14717369 original size:3 final size:3
Alignment explanation
Indices: 14717361--14717388 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
14717351 TTACGTTAAA
14717361 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
14717389 GTAGTGAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:14717438 original size:53 final size:49
Alignment explanation
Indices: 14717373--14717473 Score: 157
Period size: 50 Copynumber: 2.0 Consensus size: 49
14717363 GAAGAAGAAG
* * *
14717373 AAGAAGAAGAAGAAGAGTAGTGAAGATGGTGACAAAAAACAACCGAATGA
1 AAGAAAAAGAAGAAGAATAGTGAAGATGGCGAC-AAAAACAACCGAATGA
*
14717423 AAGAAAAAGAAGAAGAATAGTGAAGATGGCGACAAAAATAACCGAATGA
1 AAGAAAAAGAAGAAGAATAGTGAAGATGGCGACAAAAACAACCGAATGA
14717472 AA
1 AA
14717474 AATATATAGG
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
49 17 0.36
50 30 0.64
ACGTcount: A:0.56, C:0.08, G:0.26, T:0.10
Consensus pattern (49 bp):
AAGAAAAAGAAGAAGAATAGTGAAGATGGCGACAAAAACAACCGAATGA
Found at i:14718743 original size:22 final size:22
Alignment explanation
Indices: 14718718--14718761 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
14718708 AATCAATTAT
14718718 AATTTTAT-TATTTATTTATTTA
1 AATTTTATATATTT-TTTATTTA
14718740 AATTTTATAATATTTTTTATTT
1 AATTTTAT-ATATTTTTTATTT
14718762 TAGAAGAGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 8 0.40
23 7 0.35
24 5 0.25
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (22 bp):
AATTTTATATATTTTTTATTTA
Found at i:14734696 original size:42 final size:42
Alignment explanation
Indices: 14734616--14734697 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
14734606 CGTTTTCTCT
* **
14734616 ATGCCATAGTCCAACTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
*
14734658 ATGCCATAGCCCAGCTATGGTCTTACACAGTA-GCACATAT
1 ATGCCATAGCCCAACTATGGTCTTACACA-TATGCACATAT
14734698 CACACCGATG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 33 0.94
43 2 0.06
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
Found at i:14736532 original size:24 final size:24
Alignment explanation
Indices: 14736505--14736628 Score: 248
Period size: 24 Copynumber: 5.2 Consensus size: 24
14736495 AATAAGACCT
14736505 CTTCCAAATAAGTGAAAAATTTTC
1 CTTCCAAATAAGTGAAAAATTTTC
14736529 CTTCCAAATAAGTGAAAAATTTTC
1 CTTCCAAATAAGTGAAAAATTTTC
14736553 CTTCCAAATAAGTGAAAAATTTTC
1 CTTCCAAATAAGTGAAAAATTTTC
14736577 CTTCCAAATAAGTGAAAAATTTTC
1 CTTCCAAATAAGTGAAAAATTTTC
14736601 CTTCCAAATAAGTGAAAAATTTTC
1 CTTCCAAATAAGTGAAAAATTTTC
14736625 CTTC
1 CTTC
14736629 TCTTTATTAA
Statistics
Matches: 100, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 100 1.00
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.34
Consensus pattern (24 bp):
CTTCCAAATAAGTGAAAAATTTTC
Found at i:14736858 original size:16 final size:15
Alignment explanation
Indices: 14736838--14736878 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
14736828 TATTAAAATG
14736838 AAAAATTAAATTATAT
1 AAAAATTAAA-TATAT
*
14736854 CAAAATTAAA-ATAT
1 AAAAATTAAATATAT
14736868 AAAAATTAAAT
1 AAAAATTAAAT
14736879 CTCAAATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 13 0.59
16 9 0.41
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (15 bp):
AAAAATTAAATATAT
Found at i:14737148 original size:28 final size:30
Alignment explanation
Indices: 14737104--14737177 Score: 91
Period size: 28 Copynumber: 2.5 Consensus size: 30
14737094 TTTAATAGTT
* * *
14737104 TATATTTTTATAATTTTAAAA-AATTAAAT
1 TATAATTTTATATTTTTAAAAGAATTAAAG
14737133 TA-AATTTTATATTTTTAAAAGGAATTAAAG
1 TATAATTTTATATTTTTAAAA-GAATTAAAG
14737163 TATAATTTTAT-TTTT
1 TATAATTTTATATTTT
14737178 ACTAAATTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
28 16 0.41
29 2 0.05
30 13 0.33
31 8 0.21
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (30 bp):
TATAATTTTATATTTTTAAAAGAATTAAAG
Found at i:14737537 original size:22 final size:23
Alignment explanation
Indices: 14737509--14737565 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
14737499 AAATATTCTT
*
14737509 TTTTGTTGTTATT-TTGCTACCA
1 TTTTGTTGTTATTATTACTACCA
*
14737531 TTTTGTTGTT-TTATTACTACTA
1 TTTTGTTGTTATTATTACTACCA
*
14737553 ATTTGTTGTTATT
1 TTTTGTTGTTATT
14737566 GTTTGGATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 2 0.07
22 26 0.87
23 2 0.07
ACGTcount: A:0.16, C:0.09, G:0.12, T:0.63
Consensus pattern (23 bp):
TTTTGTTGTTATTATTACTACCA
Found at i:14744117 original size:84 final size:83
Alignment explanation
Indices: 14744004--14744157 Score: 254
Period size: 84 Copynumber: 1.8 Consensus size: 83
14743994 TTTATAATTA
* *
14744004 ATTTACTCAAGTAACCTAAACCCTAATTTATTTGATTCTTTCCTTAAAAACCCTAAACACTAAAC
1 ATTTACTCAAGTAACCTAAACCCTAATTTATTTAATTCTTTCCTTAAAAACCATAAACACTAAAC
14744069 CCTAATCTAAGTTTTTTT
66 CCTAATCTAAGTTTTTTT
* * *
14744087 ATTTACTCAAGTAACCCTAAACCCTAATTTATTTAATTTTTTTCTTAAAAACCATAAACATTAAA
1 ATTTACTCAAGTAA-CCTAAACCCTAATTTATTTAATTCTTTCCTTAAAAACCATAAACACTAAA
14744152 CCCTAA
65 CCCTAA
14744158 AATCTAAAAA
Statistics
Matches: 65, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
83 14 0.22
84 51 0.78
ACGTcount: A:0.38, C:0.22, G:0.03, T:0.38
Consensus pattern (83 bp):
ATTTACTCAAGTAACCTAAACCCTAATTTATTTAATTCTTTCCTTAAAAACCATAAACACTAAAC
CCTAATCTAAGTTTTTTT
Found at i:14747940 original size:285 final size:284
Alignment explanation
Indices: 14747390--14748262 Score: 1229
Period size: 285 Copynumber: 3.0 Consensus size: 284
14747380 TATGTTAGGT
* * * *
14747390 TTGTCCTATTCTTTTGTTTTTATCTTTGAAGTAGTTTGTG-AGTAGTGATTGGTAGTGAAAAGCG
1 TTGTCCTATTCTTTTGCTTTTAAC-TTGAAGTTGTTTG-GAAGTAGTGATTGGTAGTGAAAAGCC
* * * * *
14747454 GATATGATAACGTGCTTCGGAAGTGATATTAGTACATTTTTGAACTTACAAGTCTGAAGTCATTG
64 GATATAATAACGTGCTTCGGAAGTGATATTACTACATTTTTTAACTTA-AAATGTGAAGTCATTG
*
14747519 ATTATGCTTTCAAGTGGTTTAAGAACACGACTTTCCTGTTCTTTTGGTATCGTATCAGCACTT-G
128 ATTATGCTTTCAAGTGGTTTAAGAACACGACTTTCCTGTTCTTTTGGTATCGTATAAGCA-TTCG
*
14747583 TAATTTCCTATTTTCAACATAGTTTGATGATGATTT-GGAAGGCATCTTTTTGATTATGGAATAT
192 TAATTTCCTATTTTCAACATAGTTTGATGATGATTTGGGAA--CATCTTTTTGATTATGGTATAT
*
14747647 GTTAAGTATAGCTTGTAGTTTGATGCTATG
255 GATAAGTATAGCTTGTAGTTTGATGCTATG
* *
14747677 TTGTCCCATTCTTTTGCTTTTAAC-TGAAGTTTTTTGGAAGTAGTGATTGGTAGTGAAAAGCCGA
1 TTGTCCTATTCTTTTGCTTTTAACTTGAAGTTGTTTGGAAGTAGTGATTGGTAGTGAAAAGCCGA
* *
14747741 TATAATAACGTGCTTCGGAAGTGATATTACTACATTTTTTAACTTGAAAATGTAAAGTTATTGAT
66 TATAATAACGTGCTTCGGAAGTGATATTACTACATTTTTTAACTT-AAAATGTGAAGTCATTGAT
* *
14747806 TATGCTTTCAAGTGGTTTAAGAACACAACTTTCCTGTTCTTTTGGTATCGTATAAACATTCGTAA
130 TATGCTTTCAAGTGGTTTAAGAACACGACTTTCCTGTTCTTTTGGTATCGTATAAGCATTCGTAA
*
14747871 TTTCCTATTTTCAACATAGTTTGATGATGATTTGGGCAACATCTTTTCGATTATGGTATATGATA
195 TTTCCTATTTTCAACATAGTTTGATGATGATTTGGG-AACATCTTTTTGATTATGGTATATGATA
14747936 AGTATAGCTTGTAGTTTGATGCTATG
259 AGTATAGCTTGTAGTTTGATGCTATG
* *
14747962 TTGTCCTATTCTTTTACTTTTAACTTTGAAGTTGTTTGGAAGTAGTGATTGGTATTGAAAAGCCG
1 TTGTCCTATTCTTTTGCTTTTAAC-TTGAAGTTGTTTGGAAGTAGTGATTGGTAGTGAAAAGCCG
*
14748027 ATATAATAACGTGCTTCGGAAGTGACATTACTACATTTTTTTAACTTAAAAATGTGAAGTCATTT
65 ATATAATAACGTGCTTCGGAAGTGATATTACTACA-TTTTTTAACTT-AAAATGTGAAGTCA-TT
* * *
14748092 AATTATGCTTTCAAGTGGTTTAAGAACAGTCGACTTTCCTGTTCTTTTGGTATCATTTAAGCATT
127 GATTATGCTTTCAAGTGGTTTAAGAACA--CGACTTTCCTGTTCTTTTGGTATCGTATAAGCATT
* * * * * *
14748157 CATAGTTT-CTGGTTTTCAGCTTAGTTTGATGATGATTT-GGATGGCATCTTTTTGATTATGGTA
190 CGTAATTTCCT-ATTTTCAACATAGTTTGATGATGATTTGGGA--ACATCTTTTTGATTATGGTA
* *
14748220 TATGATAAGTATA-ATTGTTGTTTGATGCTATG
252 TATGATAAGTATAGCTTGTAGTTTGATGCTATG
* *
14748252 TTTTCGTATTC
1 TTGTCCTATTC
14748263 ATTGGTTTTG
Statistics
Matches: 529, Mismatches: 43, Indels: 25
0.89 0.07 0.04
Matches are distributed among these distances:
284 3 0.01
285 254 0.48
286 3 0.01
287 94 0.18
288 23 0.04
289 30 0.06
290 30 0.06
291 92 0.17
ACGTcount: A:0.26, C:0.12, G:0.20, T:0.43
Consensus pattern (284 bp):
TTGTCCTATTCTTTTGCTTTTAACTTGAAGTTGTTTGGAAGTAGTGATTGGTAGTGAAAAGCCGA
TATAATAACGTGCTTCGGAAGTGATATTACTACATTTTTTAACTTAAAATGTGAAGTCATTGATT
ATGCTTTCAAGTGGTTTAAGAACACGACTTTCCTGTTCTTTTGGTATCGTATAAGCATTCGTAAT
TTCCTATTTTCAACATAGTTTGATGATGATTTGGGAACATCTTTTTGATTATGGTATATGATAAG
TATAGCTTGTAGTTTGATGCTATG
Found at i:14766035 original size:22 final size:22
Alignment explanation
Indices: 14766007--14766049 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
14765997 GCTGCACCTA
14766007 TTTTTTCAAAATTGATTTAATT
1 TTTTTTCAAAATTGATTTAATT
14766029 TTTTTTCAAAATTGATTTAAT
1 TTTTTTCAAAATTGATTTAAT
14766050 CCGGTAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.58
Consensus pattern (22 bp):
TTTTTTCAAAATTGATTTAATT
Done.