Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 5 of 144
Found at i:884983 original size:16 final size:17
Alignment explanation
Indices: 884958--884990 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
884948 TGATCATAGC
884958 ATTATCATACT-TTTTT
1 ATTATCATACTATTTTT
*
884974 ATTATTATACTATTTTT
1 ATTATCATACTATTTTT
884991 GTCATTACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64
Consensus pattern (17 bp):
ATTATCATACTATTTTT
Found at i:885850 original size:24 final size:24
Alignment explanation
Indices: 885818--885867 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
885808 AGGTTTCGAC
* *
885818 ATAATATATTT-AGCATTTATTAGA
1 ATAACATATTTGA-CATTGATTAGA
885842 ATAACATATTTGACATTGATTAGA
1 ATAACATATTTGACATTGATTAGA
885866 AT
1 AT
885868 TAGGTTTTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 22 0.96
25 1 0.04
ACGTcount: A:0.42, C:0.06, G:0.10, T:0.42
Consensus pattern (24 bp):
ATAACATATTTGACATTGATTAGA
Found at i:891528 original size:21 final size:21
Alignment explanation
Indices: 891492--891535 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
891482 AAATTTATTA
*
891492 AAATTTATTAGGGACGATTCTT
1 AAATTTATTAGAGACGATT-TT
891514 AAATTT-TTAGAGACGATTTT
1 AAATTTATTAGAGACGATTTT
891534 AA
1 AA
891536 TGGTTCCCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.19
21 11 0.52
22 6 0.29
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41
Consensus pattern (21 bp):
AAATTTATTAGAGACGATTTT
Found at i:894823 original size:56 final size:56
Alignment explanation
Indices: 894737--894890 Score: 245
Period size: 56 Copynumber: 2.8 Consensus size: 56
894727 TCTTTGTTAC
** * *
894737 GATATTATTATGCAATATTGTTTTTTAGCAATTTGATTCTTAATAGAATATTATAA
1 GATATTATTATGGGATATTATCTTTTAGCAATTTGATTCTTAATAGAATATTATAA
* * *
894793 GATATTATTATGGGATATTATCTCTTAGCAATTTGATTCTTAATGGGATATTATAA
1 GATATTATTATGGGATATTATCTTTTAGCAATTTGATTCTTAATAGAATATTATAA
894849 GATATTATTATGGGATATTATCTTTTAGCAATTTGATTCTTA
1 GATATTATTATGGGATATTATCTTTTAGCAATTTGATTCTTA
894891 CGTAACTACT
Statistics
Matches: 90, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 90 1.00
ACGTcount: A:0.32, C:0.06, G:0.14, T:0.47
Consensus pattern (56 bp):
GATATTATTATGGGATATTATCTTTTAGCAATTTGATTCTTAATAGAATATTATAA
Found at i:895787 original size:51 final size:51
Alignment explanation
Indices: 895711--895814 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
895701 AGAAAGTCAC
*
895711 TTGTATTTTTTAGTTAGTTTATTATGATTTATGGGGGTTTTATGACACTCT
1 TTGTATTTTTTAGTTAGTTTATTATGATTTATGGGGGTTTTATGAAACTCT
895762 TTGTATTTTTTAGTTAGTTTATTATGATTTATGGGGGTTTTATGAAACTCT
1 TTGTATTTTTTAGTTAGTTTATTATGATTTATGGGGGTTTTATGAAACTCT
895813 TT
1 TT
895815 CATCTTGTGG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.20, C:0.05, G:0.19, T:0.56
Consensus pattern (51 bp):
TTGTATTTTTTAGTTAGTTTATTATGATTTATGGGGGTTTTATGAAACTCT
Found at i:897946 original size:6 final size:6
Alignment explanation
Indices: 897934--897997 Score: 105
Period size: 6 Copynumber: 11.0 Consensus size: 6
897924 ACAATCTCTT
*
897934 ATTTT- ATTTTT ATTTT- ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA
1 ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA
897980 ATTTTA ATTTTA ATTTTA
1 ATTTTA ATTTTA ATTTTA
897998 TGTTAAAGTG
Statistics
Matches: 57, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
5 10 0.18
6 47 0.82
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (6 bp):
ATTTTA
Found at i:902800 original size:17 final size:17
Alignment explanation
Indices: 902778--902811 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
902768 ATCCACTAAT
*
902778 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
902795 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
902812 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:907439 original size:17 final size:17
Alignment explanation
Indices: 907417--907450 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
907407 ATCCACTAAT
*
907417 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
907434 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
907451 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:907747 original size:144 final size:144
Alignment explanation
Indices: 907484--908001 Score: 754
Period size: 144 Copynumber: 3.6 Consensus size: 144
907474 TTTCTTAACA
* *
907484 AAAGCAACAAACTTAATGGATCCATTCCGCAAGAAATTGGGAGACTAAGGAATTTG-GTTGCATT
1 AAAGCAACAAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTAACGAATTTGTG-TGCATT
* * * *
907548 GGATCTATCCTACAATAGGCTTGTTGGTCCAATCCCATCTTCTGTTAGCAACTTAACCAGTCTTG
65 GGATCTATCCTCCAATAGGCTTGTTGGTCCAATCCCATCTTCTGTCAGCAGCTTAACCAATCTTG
907613 CCTCGTTGTTCCTTC
130 CCTCGTTGTTCCTTC
* * * * *
907628 AAAGCAACAAACTTAATGGATCCATTCCACAAGAAATTGGAAGACTAACGACTTTGTGGGAATTC
1 AAAGCAACAAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTAACGAATTTGTGTGCATTG
*
907693 GATCTATCCTCCAATAGTCTTGTTGGTCCAATCCCATCTTCTGTCAGCAGCTTAACCAATCTTGC
66 GATCTATCCTCCAATAGGCTTGTTGGTCCAATCCCATCTTCTGTCAGCAGCTTAACCAATCTTGC
907758 CTCGTTGTTCCTTC
131 CTCGTTGTTCCTTC
* * **
907772 AAAGCAACCAACTTAATGGATCCATTCCACAAGATATTGGGAGACTAACGAAATTACT-TGCATT
1 AAAGCAACAAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTAACG-AATTTGTGTGCATT
* * *
907836 GGATCTATCCTCCAATAGGCTTGTTGGTCCAATCCCATTTTCTGTCAGCTGGTTAACCAATCTTG
65 GGATCTATCCTCCAATAGGCTTGTTGGTCCAATCCCATCTTCTGTCAGCAGCTTAACCAATCTTG
907901 CCTCGTTGTTCCTTC
130 CCTCGTTGTTCCTTC
* * * *
907916 AAAGCAACCAACTTAGTGGATCCATTCCACAAGAAATTGGGAGTCTAACAAATTTG-GTGGCATT
1 AAAGCAACAAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTAACGAATTTGTGT-GCATT
* * *
907980 GAATGTATCCTTCAATAGGCTT
65 GGATCTATCCTCCAATAGGCTT
908002 TCAGGTCACA
Statistics
Matches: 336, Mismatches: 34, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
143 5 0.01
144 326 0.97
145 5 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (144 bp):
AAAGCAACAAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTAACGAATTTGTGTGCATTG
GATCTATCCTCCAATAGGCTTGTTGGTCCAATCCCATCTTCTGTCAGCAGCTTAACCAATCTTGC
CTCGTTGTTCCTTC
Found at i:912563 original size:144 final size:144
Alignment explanation
Indices: 912362--912655 Score: 459
Period size: 144 Copynumber: 2.0 Consensus size: 144
912352 CTCAAACAAC
912362 AGGCTTGTTGGTCAAATCCCATCTTCCGTCAGCAACTTAACCAATCTTGCCTCGTTGTTCCTTCA
1 AGGCTTGTTGGTCAAATCCCATCTTCCGTCAGCAACTTAACCAATCTTGCCTCGTTGTTCCTTCA
** * *
912427 ATA-CAACCAACTTCATGCATCCATTCCACATGAAATTGGGAGACTAAAGAATTTGGTT-ACATT
66 A-AGCAACCAACTAAATGCATCCATTCCAAAAGAAATTGGGAGACTAAAGAATTTGGTTGA-ATT
912490 AG-ATCTATCCTTCAAT
129 -GCATCTATCCTTCAAT
* * *
912506 ATGCTTGTTGGTCCAATCCCATCTTCTGTCAGCAACTTAACCAATCTTGCCTCGTTGTTCCTTCA
1 AGGCTTGTTGGTCAAATCCCATCTTCCGTCAGCAACTTAACCAATCTTGCCTCGTTGTTCCTTCA
* *
912571 AAGCAACCAACTAAATGGATCCATTCCAAAAGATATTGGGAGACTAAAGAATTTGGTTGAATTGC
66 AAGCAACCAACTAAATGCATCCATTCCAAAAGAAATTGGGAGACTAAAGAATTTGGTTGAATTGC
912636 ATCTATCCTTCAAT
131 ATCTATCCTTCAAT
912650 AGGCTT
1 AGGCTT
912656 TCAGGTCACA
Statistics
Matches: 137, Mismatches: 10, Indels: 6
0.90 0.07 0.04
Matches are distributed among these distances:
143 2 0.01
144 134 0.98
145 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (144 bp):
AGGCTTGTTGGTCAAATCCCATCTTCCGTCAGCAACTTAACCAATCTTGCCTCGTTGTTCCTTCA
AAGCAACCAACTAAATGCATCCATTCCAAAAGAAATTGGGAGACTAAAGAATTTGGTTGAATTGC
ATCTATCCTTCAAT
Found at i:915285 original size:27 final size:28
Alignment explanation
Indices: 915254--915323 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 28
915244 TCCATTTTAG
*
915254 TTATTTTTTATTACTA-CATTTA-TACCA
1 TTATTTATTATTA-TATCATTTACTACCA
*
915281 TTATTTATTATTATATCATTTACTATCA
1 TTATTTATTATTATATCATTTACTACCA
*
915309 TTA-TAATTATTATAT
1 TTATTTATTATTATAT
915324 TTTCTATACA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 2 0.05
27 29 0.76
28 7 0.18
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (28 bp):
TTATTTATTATTATATCATTTACTACCA
Found at i:919401 original size:21 final size:21
Alignment explanation
Indices: 919375--919416 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
919365 ATATTATAAC
*
919375 TTTTTTTATTTACTAAAATAT
1 TTTTTTTATTTACCAAAATAT
919396 TTTTTTTATTTACCAAAATAT
1 TTTTTTTATTTACCAAAATAT
919417 ATAAAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (21 bp):
TTTTTTTATTTACCAAAATAT
Found at i:919572 original size:4 final size:4
Alignment explanation
Indices: 919563--919710 Score: 117
Period size: 4 Copynumber: 36.0 Consensus size: 4
919553 GAAGGAGAGG
* * *
919563 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GGAA GAAA GGAAG GAGAG GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA -GAAA GA-AA GAAA
* * *
919613 GAAA G-AA -AAA GAAG GAAA GAAAA GGAAA G-GA GAAGA GAAA AAAA GAAA
1 GAAA GAAA GAAA GAAA GAAA G-AAA -GAAA GAAA GAA-A GAAA GAAA GAAA
*
919661 GAAA GAAA G-AA GAAGA GGAAA GGAGAA GAAA -AAA GAAA GAAG GAAA
1 GAAA GAAA GAAA GAA-A -GAAA -GA-AA GAAA GAAA GAAA GAAA GAAA
919707 GAAA
1 GAAA
919711 AGGAAAGGAG
Statistics
Matches: 119, Mismatches: 12, Indels: 26
0.76 0.08 0.17
Matches are distributed among these distances:
3 12 0.10
4 77 0.65
5 24 0.20
6 6 0.05
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:919613 original size:34 final size:37
Alignment explanation
Indices: 919575--919721 Score: 171
Period size: 38 Copynumber: 4.0 Consensus size: 37
919565 AAGAAAGAAA
919575 GAAAGAAAGAAAGAAAGG-AAG-AAAGG-AAGGAGAG
1 GAAAGAAAGAAAGAAAGGAAAGAAAAGGAAAGGAGAG
*
919609 GAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAG
1 GAAAGAAAGAAAGA-AAGGAAAGAAAAGGAAAGGAG-AG
* *
919648 AGAAAAAAAGAAAGAAA-GAAAGAAGAAGAGGAAAGGAGAA
1 -GAAAGAAAGAAAGAAAGGAAAG-A-AA-AGGAAAGGAGAG
919688 GAAA-AAAGAAAG-AAGGAAAGAAAAGGAAAGGAGA
1 GAAAGAAAGAAAGAAAGGAAAGAAAAGGAAAGGAGA
919722 AGAGGAAAGG
Statistics
Matches: 99, Mismatches: 4, Indels: 19
0.81 0.03 0.16
Matches are distributed among these distances:
34 13 0.13
35 15 0.15
36 5 0.05
37 8 0.08
38 24 0.24
39 9 0.09
40 15 0.15
41 10 0.10
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (37 bp):
GAAAGAAAGAAAGAAAGGAAAGAAAAGGAAAGGAGAG
Found at i:919736 original size:35 final size:34
Alignment explanation
Indices: 919585--919737 Score: 123
Period size: 35 Copynumber: 4.4 Consensus size: 34
919575 GAAAGAAAGA
* * *
919585 AAGAAAGGAAGAAAGGAAGGAGAGGAAA-GA-AAG
1 AAGAAAGAAAGAAA-GAAGAAAAGGAAAGGAGAAG
* * * *
919618 AA-AAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAA
1 AAGAAAGAAAGAAAG--AAGAAAAGGA-AAG-GAGAAG
*
919655 AAGAAAGAAAGAAAGAAGAAGAGGAAAGGAGAAG
1 AAGAAAGAAAGAAAGAAGAAAAGGAAAGGAGAAG
* *
919689 AAAAAAGAAAGAAGGAAAGAAAAGGAAAGGAGAAG
1 AAGAAAGAAAGAAAG-AAGAAAAGGAAAGGAGAAG
* *
919724 AGGAAAGGAAGAAA
1 AAGAAAGAAAGAAA
919738 AAAAAGGTAA
Statistics
Matches: 96, Mismatches: 16, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
31 1 0.01
32 9 0.09
33 11 0.11
34 19 0.20
35 31 0.32
36 10 0.10
37 4 0.04
38 11 0.11
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (34 bp):
AAGAAAGAAAGAAAGAAGAAAAGGAAAGGAGAAG
Found at i:919741 original size:48 final size:46
Alignment explanation
Indices: 919648--919743 Score: 106
Period size: 48 Copynumber: 2.0 Consensus size: 46
919638 AAAGGAGAAG
*
919648 AGAAA-AAAAGAAAGAAAGAAAGAAGAAGAGGAAAGGAGAAGAAAAA
1 AGAAAGAAAA-AAAAAAAGAAAGAAGAAGAGGAAAGGAGAAGAAAAA
* * *
919694 AGAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGGAAAGGAAGAA-AAAAA
1 AGAAAGAA--AAAAAAAAAGAAAGAAGAAGAGGAAAGG-AGAAGAAAAA
919742 AG
1 AG
919744 GTAATTTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
46 5 0.12
47 2 0.05
48 29 0.69
49 6 0.14
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (46 bp):
AGAAAGAAAAAAAAAAAGAAAGAAGAAGAGGAAAGGAGAAGAAAAA
Found at i:924031 original size:20 final size:20
Alignment explanation
Indices: 924008--924046 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
923998 ATTTTAAATC
924008 AAACCATAACATATATTTAT
1 AAACCATAACATATATTTAT
924028 AAACCATAACATATATTTA
1 AAACCATAACATATATTTA
924047 CATGATGATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.33
Consensus pattern (20 bp):
AAACCATAACATATATTTAT
Found at i:925222 original size:103 final size:104
Alignment explanation
Indices: 925043--925307 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 104
925033 AACCGTTATT
* * * *
925043 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
925108 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
925146 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
925210 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
925250 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
925308 TTATGTACAA
Statistics
Matches: 149, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
102 1 0.01
103 82 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:925668 original size:29 final size:29
Alignment explanation
Indices: 925635--925698 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
925625 TAATCCACCA
925635 CCCAACTTTTTGAAAAATTACAATTTTG-C
1 CCCAAC-TTTTGAAAAATTACAATTTTGTC
* * *
925664 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGTC
925694 CCCAA
1 CCCAA
925699 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 23 0.77
30 7 0.23
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGTC
Found at i:925672 original size:30 final size:30
Alignment explanation
Indices: 925642--925698 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
925632 CCACCCAACT
925642 TTTTGAAAAATTACAATTTTG-CCCCAAAC
1 TTTTGAAAAATTACAATTTTGTCCCCAAAC
* * *
925671 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGTCCCCAA
925699 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 18 0.75
30 6 0.25
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGTCCCCAAAC
Found at i:927306 original size:24 final size:24
Alignment explanation
Indices: 927254--927305 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 24
927244 GACTGTTATA
927254 AAAATTATA-AAATAAAAAGTAATT
1 AAAATTATATAAATAAAAAG-AATT
*
927278 AAAATTATATAAATAAAAAAATATT
1 AAAATTATATAAATAAAAAGA-ATT
927303 AAA
1 AAA
927306 TAATATTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 10 0.40
25 15 0.60
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (24 bp):
AAAATTATATAAATAAAAAGAATT
Found at i:927957 original size:50 final size:50
Alignment explanation
Indices: 927903--928032 Score: 181
Period size: 50 Copynumber: 2.6 Consensus size: 50
927893 TTAATAAAGT
* * *
927903 CATGCATTATGTAACTTTCCTGTTAGTTAAG-TATGCATCATAAATAATGA
1 CATGCATTATGTAACTCTCATGTTAGTTAAGAT-TACATCATAAATAATGA
* *
927953 CATGCATTATGTAACTCTCATGTTAGTTAAGATTACATCATAAATTATGT
1 CATGCATTATGTAACTCTCATGTTAGTTAAGATTACATCATAAATAATGA
* *
928003 CATGCATTATGTAACTCCCATGTCAGTTAA
1 CATGCATTATGTAACTCTCATGTTAGTTAA
928033 AGTTTGCATC
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
50 71 0.99
51 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (50 bp):
CATGCATTATGTAACTCTCATGTTAGTTAAGATTACATCATAAATAATGA
Found at i:928069 original size:52 final size:50
Alignment explanation
Indices: 927899--928071 Score: 163
Period size: 50 Copynumber: 3.4 Consensus size: 50
927889 GCATTTAATA
* * *
927899 AAGTCATGCATTATGTAACTTTCC-TGTTAGTTAAG-TATGCATCATAAAT-
1 AAGTCATGCATTATGTAAC-TCCCATGTCAGTTAAGAT-TACATCATAAATG
* * * *
927948 AATGACATGCATTATGTAACTCTCATGTTAGTTAAGATTACATCATAAATT
1 AA-GTCATGCATTATGTAACTCCCATGTCAGTTAAGATTACATCATAAATG
* * * *
927999 ATGTCATGCATTATGTAACTCCCATGTCAGTTAAAGTTTGCATCTTTAAATG
1 AAGTCATGCATTATGTAACTCCCATGTCAGTT-AAGATTACATC-ATAAATG
* *
928051 AAGTCGTGCATTAAGTAACTC
1 AAGTCATGCATTATGTAACTC
928072 ATTGTCCATT
Statistics
Matches: 103, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
49 4 0.04
50 65 0.63
51 11 0.11
52 23 0.22
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (50 bp):
AAGTCATGCATTATGTAACTCCCATGTCAGTTAAGATTACATCATAAATG
Found at i:929724 original size:24 final size:22
Alignment explanation
Indices: 929679--929724 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
929669 CGGGTAATTC
* *
929679 TTTTATATACAGCAATTAATAA
1 TTTTATATAAAGCAAATAATAA
929701 TTTTATATAAAGCATAATATATAA
1 TTTTATATAAAGCA-AATA-ATAA
929725 GGGTAATTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 13 0.65
23 3 0.15
24 4 0.20
ACGTcount: A:0.48, C:0.07, G:0.04, T:0.41
Consensus pattern (22 bp):
TTTTATATAAAGCAAATAATAA
Found at i:930196 original size:32 final size:32
Alignment explanation
Indices: 930155--930219 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
930145 AATAAATTAG
930155 TCCTAAAAAATGAAAAACTACATTATATTTCA
1 TCCTAAAAAATGAAAAACTACATTATATTTCA
*
930187 TCCTAAAAAATGAAAAACTGCATTATATTTCA
1 TCCTAAAAAATGAAAAACTACATTATATTTCA
930219 T
1 T
930220 ACTTTATATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.48, C:0.15, G:0.05, T:0.32
Consensus pattern (32 bp):
TCCTAAAAAATGAAAAACTACATTATATTTCA
Found at i:930499 original size:24 final size:24
Alignment explanation
Indices: 930466--930511 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
930456 TATATTGGAT
* *
930466 AAATAATATTCTTTTTTATCTTAA
1 AAATAATATTATTTTTCATCTTAA
*
930490 AAATAGTATTATTTTTCATCTT
1 AAATAATATTATTTTTCATCTT
930512 CATCCTTCCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.35, C:0.09, G:0.02, T:0.54
Consensus pattern (24 bp):
AAATAATATTATTTTTCATCTTAA
Found at i:934939 original size:22 final size:22
Alignment explanation
Indices: 934910--934952 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
934900 AAACTAAAAT
*
934910 AAAAAATATTACAA-AATATAC
1 AAAAAATATAACAACAATATAC
934931 AAAACAATATAACAACAATATA
1 AAAA-AATATAACAACAATATA
934953 TTCAATTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 9 0.47
23 6 0.32
ACGTcount: A:0.67, C:0.12, G:0.00, T:0.21
Consensus pattern (22 bp):
AAAAAATATAACAACAATATAC
Found at i:935002 original size:13 final size:11
Alignment explanation
Indices: 934976--935017 Score: 77
Period size: 11 Copynumber: 3.9 Consensus size: 11
934966 AAAAAAATAC
934976 CTTCTTTTTCT
1 CTTCTTTTTCT
934987 CTTCTTTTTCT
1 CTTCTTTTTCT
934998 C-TCTTTTTCT
1 CTTCTTTTTCT
935008 CTTCTTTTTC
1 CTTCTTTTTC
935018 GCAGCACCTC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
10 10 0.33
11 20 0.67
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (11 bp):
CTTCTTTTTCT
Found at i:935004 original size:21 final size:21
Alignment explanation
Indices: 934978--935017 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
934968 AAAAATACCT
934978 TCTTTTTCTCTTCTTTTTCTC
1 TCTTTTTCTCTTCTTTTTCTC
934999 TCTTTTTCTCTTCTTTTTC
1 TCTTTTTCTCTTCTTTTTC
935018 GCAGCACCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (21 bp):
TCTTTTTCTCTTCTTTTTCTC
Found at i:935128 original size:12 final size:12
Alignment explanation
Indices: 935111--935138 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
935101 TTGGCACCAT
935111 TGGTGCCGCCAA
1 TGGTGCCGCCAA
935123 TGGTGCCGCCAA
1 TGGTGCCGCCAA
935135 TGGT
1 TGGT
935139 TTTGGCACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.29, G:0.36, T:0.21
Consensus pattern (12 bp):
TGGTGCCGCCAA
Found at i:935144 original size:39 final size:39
Alignment explanation
Indices: 935087--935165 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
935077 ACACGAGTAA
935087 TGCCGCCAATGGCATTGGCACCATTGGTGCCGCCAATGG
1 TGCCGCCAATGGCATTGGCACCATTGGTGCCGCCAATGG
** *
935126 TGCCGCCAATGGTTTTGGCACCTTTGGTGCCGCCAATGG
1 TGCCGCCAATGGCATTGGCACCATTGGTGCCGCCAATGG
935165 T
1 T
935166 TTTGGCCTGA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.15, C:0.29, G:0.30, T:0.25
Consensus pattern (39 bp):
TGCCGCCAATGGCATTGGCACCATTGGTGCCGCCAATGG
Found at i:943403 original size:17 final size:19
Alignment explanation
Indices: 943361--943408 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 19
943351 TCTTTAATTA
943361 TATTATTTATGTTGTAATAT
1 TATTATTTAT-TTGTAATAT
*
943381 TATTATTTATTT-TTATAT
1 TATTATTTATTTGTAATAT
943399 T-TTATTTATT
1 TATTATTTATT
943409 ATTGATTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 9 0.33
18 6 0.22
19 2 0.07
20 10 0.37
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (19 bp):
TATTATTTATTTGTAATAT
Found at i:945171 original size:26 final size:27
Alignment explanation
Indices: 945112--945213 Score: 93
Period size: 27 Copynumber: 3.6 Consensus size: 27
945102 TTATAGTTTA
945112 AATAATTTTTTATATTTCTAAAATTTT
1 AATAATTTTTTATATTTCTAAAATTTT
945139 AATAATTTTTTAT-TTT-TAAAATTTT
1 AATAATTTTTTATATTTCTAAAATTTT
* * *
945164 -ATCAAATTTCTTATATGTTTTTAATAATTTC
1 AAT--AATTT-TT-TATATTTCTAA-AATTTT
945195 AATATATTTTTCTATATTT
1 AATA-ATTTTT-TATATTT
945214 ATTTATAAGT
Statistics
Matches: 63, Mismatches: 3, Indels: 15
0.78 0.04 0.19
Matches are distributed among these distances:
24 2 0.03
25 9 0.14
26 8 0.13
27 15 0.24
28 3 0.05
29 3 0.05
30 12 0.19
31 9 0.14
32 2 0.03
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.60
Consensus pattern (27 bp):
AATAATTTTTTATATTTCTAAAATTTT
Found at i:952851 original size:144 final size:144
Alignment explanation
Indices: 952652--952962 Score: 561
Period size: 144 Copynumber: 2.2 Consensus size: 144
952642 AAAGCTTGCC
* *
952652 AATTTCTTTTGGG-ATAGAACCTTTTAATAGATTAGAACCAAGGCTTAAGTCCAGCATCTTTGAT
1 AATTTC-TTGGGGAATAGAACCTTTTAATAGATTAGAACCAAGGCTTAAGTACAGCATCTTTGAT
*
952716 AAACTACCAATACAAGAAGGGATTGAACCAGTCAATTTGTTTTGGGAGAGGTACAATGAAGTCAA
65 AAACTACCAACACAAGAAGGGATTGAACCAGTCAATTTGTTTTGGGAGAGGTACAATGAAGTCAA
952781 ATTTGCTAGATTACA
130 ATTTGCTAGATTACA
*
952796 AATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGTACAGCATCTTTGATA
1 AATTTCTTGGGGAATAGAACCTTTTAATAGATTAGAACCAAGGCTTAAGTACAGCATCTTTGATA
*
952861 AACTACCAACACAAGAAGGGATTGAACCAGTCAATTTGTTTTGGGAGAGGTACAATGAAGTTAAA
66 AACTACCAACACAAGAAGGGATTGAACCAGTCAATTTGTTTTGGGAGAGGTACAATGAAGTCAAA
952926 TTTGCTAGATTACA
131 TTTGCTAGATTACA
952940 AATTTCTTGGGGAATAGAACCTT
1 AATTTCTTGGGGAATAGAACCTT
952963 GAAGTTGGTT
Statistics
Matches: 160, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
143 5 0.03
144 155 0.97
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.30
Consensus pattern (144 bp):
AATTTCTTGGGGAATAGAACCTTTTAATAGATTAGAACCAAGGCTTAAGTACAGCATCTTTGATA
AACTACCAACACAAGAAGGGATTGAACCAGTCAATTTGTTTTGGGAGAGGTACAATGAAGTCAAA
TTTGCTAGATTACA
Found at i:953424 original size:144 final size:144
Alignment explanation
Indices: 953034--953912 Score: 1587
Period size: 144 Copynumber: 6.0 Consensus size: 144
953024 TATTGAATCG
* *
953034 ACAAGTCTATTGTTGTAGAGACTCAAATAAGTCAAATTTCTCAAATATCCAATTTCTAATGGGAT
1 ACAATTCTATTGTTGGAGAGACTCAAATAAGTCAAATTTCTCAAATATCCAATTTCTAATGGGAT
* * *
953099 AGATCCATTGATTTGGTTCCCCGAAAGGAGCAGATATTGGAGACTGGTTAATTGACCCAAAGCAG
66 AGATCCATTGATTTGGTTCCCCCAAAGGATCAGAGATTGGAGACTGGTTAATTGACCCAAAGCAG
953164 AAGGGATTGGACCA
131 AAGGGATTGGACCA
* *
953178 ACAATTCCATTGCTGGAGAGACTCAAATCCTCAAATAAGTCAAATTTCTCAAATATCCAATTTCT
1 ACAATTCTATTGTTGGAGAG------A--CTCAAATAAGTCAAATTTCTCAAATATCCAATTTCT
953243 AATGGGATAGATCCATTGATTTGGTTCCCCCAAAGGATCAGAGATTGGAGACTGGTTAATTGACC
58 AATGGGATAGATCCATTGATTTGGTTCCCCCAAAGGATCAGAGATTGGAGACTGGTTAATTGACC
953308 CAAAGCAGAAGGGATTGGACCA
123 CAAAGCAGAAGGGATTGGACCA
953330 ACAATTCTATTGTTGGAGAGACTCAAATAAGTCAAATTTCTCAAATATCCAATTTCTAATGGGAT
1 ACAATTCTATTGTTGGAGAGACTCAAATAAGTCAAATTTCTCAAATATCCAATTTCTAATGGGAT
953395 AGATCCATTGATTTGGTTCCCCCAAAGGATCAGAGATTGGAGACTGGTTAATTGACCCAAAGCAG
66 AGATCCATTGATTTGGTTCCCCCAAAGGATCAGAGATTGGAGACTGGTTAATTGACCCAAAGCAG
953460 AAGGGATTGGACCA
131 AAGGGATTGGACCA
953474 ACAATTCTATTGTTGGAGAGACTCAAATAAGTCAAATTTCTCAAATATCCAATTTCTAATGGGAT
1 ACAATTCTATTGTTGGAGAGACTCAAATAAGTCAAATTTCTCAAATATCCAATTTCTAATGGGAT
*
953539 AGATCCATTGATTTGGTTCCCCGAAAGGATCAGAGATTGGAGACTGGTTAATTGACCCAAAGCAG
66 AGATCCATTGATTTGGTTCCCCCAAAGGATCAGAGATTGGAGACTGGTTAATTGACCCAAAGCAG
*
953604 AAGGGATTCGACCA
131 AAGGGATTGGACCA
* *
953618 ACAATTCTATTCTTGGAGAGACTCAAATAAGTCAAATTTCTCAAATATCCAATTTCGAATGGGAT
1 ACAATTCTATTGTTGGAGAGACTCAAATAAGTCAAATTTCTCAAATATCCAATTTCTAATGGGAT
953683 AGATCCATTGATTTGGTTCCCCCAAAGGATCAGAGATTGGAGACTGGTTAATTGACCCAAAGCAG
66 AGATCCATTGATTTGGTTCCCCCAAAGGATCAGAGATTGGAGACTGGTTAATTGACCCAAAGCAG
953748 AAGGGATTGGACCA
131 AAGGGATTGGACCA
953762 ACAATTCTATTGTTGGAGAGACTCAAATAAGTCAAATTTCTCAAATATCCAATTTCTAATGGGAT
1 ACAATTCTATTGTTGGAGAGACTCAAATAAGTCAAATTTCTCAAATATCCAATTTCTAATGGGAT
953827 AGATCCATTGATTTGGTTCCCCCAAAGGATCAGAGATTGGAGACTGGTTAATTGACCCAAAGCAG
66 AGATCCATTGATTTGGTTCCCCCAAAGGATCAGAGATTGGAGACTGGTTAATTGACCCAAAGCAG
953892 AAGGGATTGGACCA
131 AAGGGATTGGACCA
953906 ACAATTC
1 ACAATTC
953913 CACATTGACT
Statistics
Matches: 710, Mismatches: 17, Indels: 16
0.96 0.02 0.02
Matches are distributed among these distances:
144 570 0.80
146 1 0.00
150 1 0.00
152 138 0.19
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (144 bp):
ACAATTCTATTGTTGGAGAGACTCAAATAAGTCAAATTTCTCAAATATCCAATTTCTAATGGGAT
AGATCCATTGATTTGGTTCCCCCAAAGGATCAGAGATTGGAGACTGGTTAATTGACCCAAAGCAG
AAGGGATTGGACCA
Found at i:956103 original size:132 final size:132
Alignment explanation
Indices: 955672--956046 Score: 687
Period size: 132 Copynumber: 2.8 Consensus size: 132
955662 GATTTAATTC
* *
955672 TTACCTCCCCGTGGTTATAGTGGAGTACATTGAAGCTAGTAATTCTACTTCCCTGGACAACAGTG
1 TTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTG
* *
955737 GAATAGATTAAAGATTTCATATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGA
66 GAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGA
955802 TT
131 TT
955804 TTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTG
1 TTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTG
955869 GAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGA
66 GAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGA
955934 TT
131 TT
* *
955936 TTACCTCCCTGTGGTTATAATGGAGTACATTGAAGCCAGTAATTCTACTCCCCTGGACAACAGTG
1 TTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTG
*
956001 GAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCATTAGTGGA
66 GAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGA
956047 ATAGATTGAA
Statistics
Matches: 236, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 236 1.00
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (132 bp):
TTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTG
GAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGA
TT
Found at i:956658 original size:15 final size:15
Alignment explanation
Indices: 956609--956651 Score: 77
Period size: 15 Copynumber: 2.8 Consensus size: 15
956599 ATGTAATGTA
956609 AAAAGAGAGAAGACTG
1 AAAAGAGAG-AGACTG
956625 AAAAGAGAGAGACTG
1 AAAAGAGAGAGACTG
956640 AAAAGAGAGAGA
1 AAAAGAGAGAGA
956652 AGGAAAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 18 0.67
16 9 0.33
ACGTcount: A:0.58, C:0.05, G:0.33, T:0.05
Consensus pattern (15 bp):
AAAAGAGAGAGACTG
Found at i:957201 original size:3 final size:3
Alignment explanation
Indices: 957195--957246 Score: 70
Period size: 3 Copynumber: 17.7 Consensus size: 3
957185 CATCATCATC
* *
957195 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT TTT ATT -TA ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
957242 TTT AT
1 ATT AT
957247 GTACATACAA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
2 1 0.02
3 41 0.98
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
ATT
Found at i:957470 original size:25 final size:26
Alignment explanation
Indices: 957436--957485 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
957426 TTTTATAATC
*
957436 TATATATGTATATAAT-TATTTTTTA
1 TATATATGTACATAATATATTTTTTA
*
957461 TATATATGTACATATTATATTTTTT
1 TATATATGTACATAATATATTTTTT
957486 TTCAATTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (26 bp):
TATATATGTACATAATATATTTTTTA
Found at i:958313 original size:98 final size:98
Alignment explanation
Indices: 958196--958392 Score: 324
Period size: 98 Copynumber: 2.0 Consensus size: 98
958186 TTAAAAATCA
* **
958196 TAAAGAAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGAAAATATTCCGAGTTTGGGATTCTAAAGGAATAATGCCCTAACGTATTGGGTGTGATTTC
958261 TTAAATCTTGGATAAGCGGACT-TTCTTTTAAAG
66 TTAAATCTTGGATAAGCGGA-TGTTCTTTTAAAG
* *
958294 TAAAGGAAATATTCGGAGTTTGGGATTCTAAAGGAATAATGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGAAAATATTCCGAGTTTGGGATTCTAAAGGAATAATGCCCTAACGTATTGGGTGTGATTTC
*
958359 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGCGGATGTTCTTTTAAAG
958392 T
1 T
958393 TTTATTGTAT
Statistics
Matches: 92, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
97 1 0.01
98 91 0.99
ACGTcount: A:0.30, C:0.10, G:0.23, T:0.37
Consensus pattern (98 bp):
TAAAGAAAATATTCCGAGTTTGGGATTCTAAAGGAATAATGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGCGGATGTTCTTTTAAAG
Found at i:959019 original size:16 final size:16
Alignment explanation
Indices: 958994--959026 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
958984 TTATAGGTGG
958994 AATTGGAATCATCAAT
1 AATTGGAATCATCAAT
*
959010 AATTGTAATCATCAAT
1 AATTGGAATCATCAAT
959026 A
1 A
959027 TATTTGGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.33
Consensus pattern (16 bp):
AATTGGAATCATCAAT
Found at i:959819 original size:40 final size:40
Alignment explanation
Indices: 959775--959854 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
959765 ACTTCAGCAG
959775 AACATTTTCTAAACCAAGGGTAAATGAAATGGCTTTTTAT
1 AACATTTTCTAAACCAAGGGTAAATGAAATGGCTTTTTAT
959815 AACATTTTCTAAACCAAGGGTAAATGAAATGGCTTTTTAT
1 AACATTTTCTAAACCAAGGGTAAATGAAATGGCTTTTTAT
959855 GGAAAAGGTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (40 bp):
AACATTTTCTAAACCAAGGGTAAATGAAATGGCTTTTTAT
Found at i:962372 original size:107 final size:105
Alignment explanation
Indices: 962173--962490 Score: 458
Period size: 107 Copynumber: 3.0 Consensus size: 105
962163 ATTTAAGAGG
*
962173 AGGATATTTGGCTATTTGGTTCAACGAGAAATCGAGACCCAGCACGTTAGGGCACGTTTTCTCGA
1 AGGATATTTGGCTATTTGG-TCAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGA
* * * *
962238 ATTTCCAAACGCGAAATATTACTTTATTTTGAAATTTTAAA
65 ATTTCCAAACGCGAAATATTGCCTTATTTAGAAATCTTAAA
* * * *
962279 AGGATATTTTAGCTATTTGGTCAAACG-GAAAATCGAAACCCAGCGCGTTAGAGCACATTTTCTC
1 AGGATA-TTTGGCTATTTGGTC-AACGAG-AAATCGAAACCCAGCACGTTAGGGCACGTTTTCTC
* * *
962343 GAATTTCTAAACGCAAAACATTGCCTTATTTAGAAAATCTTAAA
63 GAATTTCCAAACGCGAAATATTGCCTTATTTAG-AAATCTTAAA
962387 AGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGA
1 AGGATATTTGGCTATTTGGTC-AACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGA
962452 ATTTCCAAACGCGAAATATTGCCTTATTTAGAAAATCTT
65 ATTTCCAAACGCGAAATATTGCCTTATTTAG-AAATCTT
962491 TTCGAATAGT
Statistics
Matches: 187, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
106 9 0.05
107 162 0.87
108 16 0.09
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (105 bp):
AGGATATTTGGCTATTTGGTCAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGAA
TTTCCAAACGCGAAATATTGCCTTATTTAGAAATCTTAAA
Found at i:966118 original size:15 final size:15
Alignment explanation
Indices: 966098--966127 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
966088 ATTAAAAGAC
966098 CTTACCCCTAAGCAT
1 CTTACCCCTAAGCAT
966113 CTTACCCCTAAGCAT
1 CTTACCCCTAAGCAT
966128 TATTGAATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.40, G:0.07, T:0.27
Consensus pattern (15 bp):
CTTACCCCTAAGCAT
Found at i:974056 original size:166 final size:166
Alignment explanation
Indices: 973781--974102 Score: 459
Period size: 166 Copynumber: 1.9 Consensus size: 166
973771 AAATTAATTA
* * * *
973781 AAAAAGACATATCAATAGTTAAAGTAGGGCTTAAAGGTATTTTTGATCGTTGAACTTTTTCAAAA
1 AAAAAGAAATATCAATAGTTAAAGAAGGGCTTAAAGGTATTTTTGATCCTCGAACTTTTTCAAAA
* * *
973846 AAAATCAATTAAGCCCTTGCAGACTTTTTGCACCCAACTGAG-CCCTTAATCTAACAAAACTGAC
66 AAAATCAATTAAGCCCCTACAGACTTTTTGCACCCAACTGAGCCCCTGAA-CTAACAAAACTGAC
* *
973910 AAAATAGGCCTTTTAACTAATGTTGACTGATTCTTAG
130 AAAATAGGCCCTTTAACTAATATTGACTGATTCTTAG
* * *
973947 AAAAAGAAATATCAATAGTTAAAGAAGGGTTTAATGGTATTTTTGGTCCTCGAACTTTTTCAAAA
1 AAAAAGAAATATCAATAGTTAAAGAAGGGCTTAAAGGTATTTTTGATCCTCGAACTTTTTCAAAA
* * *
974012 AAAATCAATTAAGCCCCTAC-GAACTTTTTGCACCCAATTGAGCCCCTGAACTAACAAAATTGGC
66 AAAATCAATTAAGCCCCTACAG-ACTTTTTGCACCCAACTGAGCCCCTGAACTAACAAAACTGAC
* *
974076 CAAATAGGCCCTTTGACTAATATTGAC
130 AAAATAGGCCCTTTAACTAATATTGAC
974103 CGTTACAACA
Statistics
Matches: 137, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
165 1 0.01
166 130 0.95
167 6 0.04
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30
Consensus pattern (166 bp):
AAAAAGAAATATCAATAGTTAAAGAAGGGCTTAAAGGTATTTTTGATCCTCGAACTTTTTCAAAA
AAAATCAATTAAGCCCCTACAGACTTTTTGCACCCAACTGAGCCCCTGAACTAACAAAACTGACA
AAATAGGCCCTTTAACTAATATTGACTGATTCTTAG
Found at i:975684 original size:13 final size:12
Alignment explanation
Indices: 975655--975691 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
975645 ATTCAAAAGA
*
975655 TAAAAGCTTGAT
1 TAAAAACTTGAT
975667 TAAAAACTTGAT
1 TAAAAACTTGAT
975679 TGAAAAACTTGAT
1 T-AAAAACTTGAT
975692 GATTAAATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 12 0.52
13 11 0.48
ACGTcount: A:0.46, C:0.08, G:0.14, T:0.32
Consensus pattern (12 bp):
TAAAAACTTGAT
Found at i:978692 original size:6 final size:6
Alignment explanation
Indices: 978682--978712 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
978672 CTTAGATTTT
*
978682 GAAAAT GAAAAC GAAAAC GAAAAC GAAAAC G
1 GAAAAC GAAAAC GAAAAC GAAAAC GAAAAC G
978713 GGAGTCGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.65, C:0.13, G:0.19, T:0.03
Consensus pattern (6 bp):
GAAAAC
Found at i:979734 original size:21 final size:22
Alignment explanation
Indices: 979701--979751 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
979691 TTTTTATTTA
* *
979701 AAATAAAATTAAA-AACAAATAT
1 AAATAAAAGTAAATAA-AAAAAT
979723 AAA-AAAAGTAAATAAAAAAAT
1 AAATAAAAGTAAATAAAAAAAT
979744 AAATAAAA
1 AAATAAAA
979752 ATGAGAATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 16 0.64
22 9 0.36
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.18
Consensus pattern (22 bp):
AAATAAAAGTAAATAAAAAAAT
Found at i:979739 original size:12 final size:12
Alignment explanation
Indices: 979721--979752 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
979711 AAAAACAAAT
979721 ATAAAAAAAGTAA
1 ATAAAAAAA-TAA
979734 ATAAAAAAATAA
1 ATAAAAAAATAA
979746 ATAAAAA
1 ATAAAAA
979753 TGAGAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (12 bp):
ATAAAAAAATAA
Found at i:981269 original size:43 final size:43
Alignment explanation
Indices: 981159--981272 Score: 106
Period size: 43 Copynumber: 2.6 Consensus size: 43
981149 CATGAGGATG
*
981159 AGATTAGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATA
1 AGATT-GTGGTTTTAATCCGCTCCACTACAACTTCAGGGAGATA
* * ** * **
981203 GGATTG-GTTTCTTTTGTCTGCTCCACTACTGCTT-AGGGAGATA
1 AGATTGTG-GT-TTTAATCCGCTCCACTACAACTTCAGGGAGATA
981246 AGATCTGTGGTTTTAATCCGCTCCACT
1 AGAT-TGTGGTTTTAATCCGCTCCACT
981273 GCAATTGATG
Statistics
Matches: 53, Mismatches: 13, Indels: 9
0.71 0.17 0.12
Matches are distributed among these distances:
42 1 0.02
43 27 0.51
44 24 0.45
45 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (43 bp):
AGATTGTGGTTTTAATCCGCTCCACTACAACTTCAGGGAGATA
Found at i:981391 original size:50 final size:49
Alignment explanation
Indices: 981321--981487 Score: 145
Period size: 50 Copynumber: 3.4 Consensus size: 49
981311 ACTGCAATGT
* *
981321 CAGGGAACAAGATTCGCCATTGTAGCTTTAATCTATTCCACTGCACCAC
1 CAGGGAACAAGATTCGCCATTGTAGCTTCAATCTATTCCACTGCAACAC
* ** * ** * ***
981370 CAGGGAAGTAAGATTCGCCATTGCGGCTTCAATCTTTTTAATTGCAATGT
1 CAGGGAA-CAAGATTCGCCATTGTAGCTTCAATCTATTCCACTGCAACAC
* * ** * *
981420 CGGGGAACAAGATTTGCTGTTGTAGCTTCAATCTAATCCACTGCATCAC
1 CAGGGAACAAGATTCGCCATTGTAGCTTCAATCTATTCCACTGCAACAC
*
981469 CAGGGAAGTAAGATTCGCC
1 CAGGGAA-CAAGATTCGCC
981488 GTCTTTGATC
Statistics
Matches: 84, Mismatches: 32, Indels: 3
0.71 0.27 0.03
Matches are distributed among these distances:
49 40 0.48
50 44 0.52
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (49 bp):
CAGGGAACAAGATTCGCCATTGTAGCTTCAATCTATTCCACTGCAACAC
Found at i:983283 original size:42 final size:42
Alignment explanation
Indices: 983136--983343 Score: 235
Period size: 43 Copynumber: 4.9 Consensus size: 42
983126 TAACCGTTAC
* *
983136 ACGGTGGAATCAGCACTTAGCAACCACC-TTATAATCAATGAT
1 ACGG-GGAATCAGCACTTAGCAACCACCTTTATATTCAAGGAT
* * *
983178 ACGGGGAATCAGCACATAGCAACC-CCTTTCACAGTCAAGGAT
1 ACGGGGAATCAGCACTTAGCAACCACCTTT-ATATTCAAGGAT
** *
983220 ACTGTAGAATCAGCACTTAGCAACCACCTTTATATTCAATGAT
1 AC-GGGGAATCAGCACTTAGCAACCACCTTTATATTCAAGGAT
* * *
983263 ATGGGGAATCAGCACATAGCAACC-CCTTTCACAGTT-AAGGAT
1 ACGGGGAATCAGCACTTAGCAACCACCTTT-ATA-TTCAAGGAT
983305 ACGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAA
1 ACGG-GGAATCAGCACTTAGCAACCACCTTTATATTCAA
983344 AGATGCAGAT
Statistics
Matches: 138, Mismatches: 19, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
40 2 0.01
41 26 0.19
42 46 0.33
43 54 0.39
44 10 0.07
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (42 bp):
ACGGGGAATCAGCACTTAGCAACCACCTTTATATTCAAGGAT
Found at i:983284 original size:85 final size:85
Alignment explanation
Indices: 983136--983343 Score: 355
Period size: 85 Copynumber: 2.5 Consensus size: 85
983126 TAACCGTTAC
* *
983136 ACGGTGGAATCAGCACTTAGCAACCACC-TTATAATCAATGATACGGGGAATCAGCACATAGCAA
1 ACGGTAGAATCAGCACTTAGCAACCACCTTTATATTCAATGATACGGGGAATCAGCACATAGCAA
983200 CCCCTTTCACAGTCAAGGAT
66 CCCCTTTCACAGTCAAGGAT
* *
983220 ACTGTAGAATCAGCACTTAGCAACCACCTTTATATTCAATGATATGGGGAATCAGCACATAGCAA
1 ACGGTAGAATCAGCACTTAGCAACCACCTTTATATTCAATGATACGGGGAATCAGCACATAGCAA
*
983285 CCCCTTTCACAGTTAAGGAT
66 CCCCTTTCACAGTCAAGGAT
*
983305 ACGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAA
1 ACGGTAGAATCAGCACTTAGCAACCACCTTTATATTCAA
983344 AGATGCAGAT
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
84 26 0.22
85 90 0.78
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (85 bp):
ACGGTAGAATCAGCACTTAGCAACCACCTTTATATTCAATGATACGGGGAATCAGCACATAGCAA
CCCCTTTCACAGTCAAGGAT
Found at i:983435 original size:51 final size:51
Alignment explanation
Indices: 983359--983650 Score: 253
Period size: 51 Copynumber: 5.8 Consensus size: 51
983349 CAGATTCACA
* *
983359 TAGTAGCATGCACATAGTACTACACATGTGACCATCACTATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGATACACG
* * *
983410 TAGTAGCCTGCACATAATACTACACACGTGATCGA--AGCTATCCCGTATGCA--
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATCA-CTAT-CCG-ATACACG
* * * * *
983461 TAGTAGCCTTCACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACC-ATCACTATCCGATACACG
* * * * * *
983511 TAGTAGCCTACACATAGTACTACACACGTGGTCGA--AGCTATCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGT-GACCATCA-CTATCCGATACACG
* * *
983562 TAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACC-ATCACTATCCGATACACG
**
983612 TAGTAGCCTATACATAGTACTACACACGTGACCATCACT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
983651 TTCACTTTCA
Statistics
Matches: 190, Mismatches: 34, Indels: 35
0.73 0.13 0.14
Matches are distributed among these distances:
48 4 0.02
49 6 0.03
50 70 0.37
51 99 0.52
52 5 0.03
53 6 0.03
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGATACACG
Found at i:983533 original size:101 final size:101
Alignment explanation
Indices: 983357--983642 Score: 448
Period size: 101 Copynumber: 2.8 Consensus size: 101
983347 TGCAGATTCA
* * * *
983357 CATAGTAGCATGCACATAGTACTACACATGTGACC-ATCACTATCCGATACACGTAGTAGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTGATACACGTAGTAGCCTAC
* *
983421 ACATAATACTACACACGTGATCGAAGCTATCCCGTATG
64 ACATAGTACTACACACGTGATCGAAGCTATCCCGTACG
* *
983459 CATAGTAGCCTTCACATAGTACTACACATGCGACCTATCATTCTGGTACACGTAGTAGCCTACAC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCTATCATTCTGATACACGTAGTAGCCTACAC
* *
983524 ATAGTACTACACACGTGGTCGAAGCTATCCGGTACG
66 ATAGTACTACACACGTGATCGAAGCTATCCCGTACG
*
983560 CATAGTAGCCTGCACATAGTACTACACATGCGACCTATCATTCTGATACACGTAGTAGCCTATAC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCTATCATTCTGATACACGTAGTAGCCTACAC
983625 ATAGTACTACACACGTGA
66 ATAGTACTACACACGTGA
983643 CCATCACTTT
Statistics
Matches: 169, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
101 132 0.78
102 33 0.20
103 4 0.02
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.24
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCTATCATTCTGATACACGTAGTAGCCTACAC
ATAGTACTACACACGTGATCGAAGCTATCCCGTACG
Found at i:984896 original size:87 final size:87
Alignment explanation
Indices: 984750--985904 Score: 849
Period size: 87 Copynumber: 13.1 Consensus size: 87
984740 ACATGTAATC
* * * * *
984750 TTCGATCTGCTTCACTGTTGACGCAGGAGGGCAAGATCTGCTATCTTTAACCAGCTCCACTGTAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
* *
984815 CTGATTGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
* ** * * *
984837 TTCGATTTGCTTCATTGTCAATGCAGGAAGGCAAGATCAGCTATCTTTAACCAGCTCCACTG-TA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
984901 CTGATGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
* * *
984923 TTCGATCTGCTTCGCTGTTAACGTAGAAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
984988 CCGATGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
* * * * *
985010 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGTTATATTTATCCAACTCCACTACAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
985075 CCGATGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
* * * *
985097 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGTTATATTTAACCAACTCCACTACAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
985162 CCGATGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
* * * *
985184 TTCGATCTGCTTCGCTGTTAACGTAGGAAGGCAAGATCTGCTATCTTTAACCAGCTACATTGCAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
** *
985249 CTAATGGAGGCAAGGTTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
* * * * * ** * *
985271 TTCGATCTTC-ACTGATCTGTT-CT-CTAGGGAA--CATGACCTG-TATAATGAACCTAG-T-TA
1 TTCGATCTGCTTC-G--CTGTTAATGC-A-GGAAGGCAAGATCTGCTATCTTTAACC-AGCTCCA
* * * ** *
985328 -TGCCTAA-TGATTAGGATGGCATGATCAAAATG-A
60 CTG-C-AACCGA-T-GGA-GGCAAG-GC--TTTGTT
* * * * *** * * * **
985361 ATCAAATGCTCCTAACTAGACATGTGTGAATG--GTGTTTGCATGA-ATGCAGAAT-TTTATTC-
1 TTC-GAT-CTGCT---TCG-C-TGT-T-AATGCAG-GAAGGCAAGATCTGC--TATCTTTAACCA
* * *** *
985421 -TTCCGA--G-AA-TGAT-CCCGCTTAGG--TTGTCAT
54 GCTCC-ACTGCAACCGATGGAGGC-AAGGCTTTGT--T
** * * * *
985451 TACTCGAAGT-TTATTAAGGCT-TT-GT-CACTGAAGTGCTACAACACCCTCCTGCCTATCTTTA
1 T--TCG-A-TCTGCTT--CGCTGTTAATGCA-GGAAG-G---CAAGA---T-CTG-CTATCTTTA
* *
985512 ACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTATT
50 ACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTT
* * * * *
985550 TTTGATCTGCTTCACTGTCAATGCAGGAAGGCAAGATCAGCTATCTTTAACCAGCTCCACTG-TA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
985614 CTGATGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
* * * * *
985636 TTCGATCTGCTTCACTGTTAACGTAGGAAGGCAAGATTTGCTATCTTTAACCAGCTCCACTACAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
985701 CCGATGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
* *
985723 TTCGATCTGCTTCGCTGTTAATGTAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
985788 CCGATGGAGGCAAGGCTTTATT
66 CCGATGGAGGCAAGGCTTTGTT
* *
985810 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTACATTGCAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
** *
985875 CTAATGGAGGCAAGGTTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
985897 TTCGATCT
1 TTCGATCT
985905 TCACTGATCT
Statistics
Matches: 855, Mismatches: 140, Indels: 146
0.75 0.12 0.13
Matches are distributed among these distances:
84 3 0.00
85 5 0.01
86 167 0.20
87 556 0.65
88 10 0.01
89 14 0.02
90 3 0.00
91 8 0.01
92 11 0.01
93 3 0.00
94 11 0.01
95 15 0.02
96 14 0.02
97 7 0.01
98 9 0.01
99 12 0.01
100 4 0.00
101 3 0.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (87 bp):
TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
CCGATGGAGGCAAGGCTTTGTT
Found at i:985044 original size:43 final size:43
Alignment explanation
Indices: 984995--985131 Score: 104
Period size: 43 Copynumber: 3.2 Consensus size: 43
984985 CAACCGATGG
984995 AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGA
1 AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGA
* * ** * * ** *
985038 AGGCAAGATCTGTTATATTT--ATCCAACTCCACT-ACAA-CCGATGG-
1 AGGCAAG-GCT-TTGT-TTTCGAT-CTGCTTCGCTGTTAATGC-A-GGA
985082 AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGA
1 AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGA
985125 AGGCAAG
1 AGGCAAG
985132 ATCTGTTATA
Statistics
Matches: 65, Mismatches: 18, Indels: 22
0.62 0.17 0.21
Matches are distributed among these distances:
41 3 0.05
42 11 0.17
43 22 0.34
44 15 0.23
45 11 0.17
46 3 0.05
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (43 bp):
AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGA
Found at i:985668 original size:43 final size:43
Alignment explanation
Indices: 985621--985757 Score: 111
Period size: 45 Copynumber: 3.2 Consensus size: 43
985611 GTACTGATGG
985621 AGGCAAGGCTTTGTTTTCGATCTGCTTCACTGTTAACGTAGGA
1 AGGCAAGGCTTTGTTTTCGATCTGCTTCACTGTTAACGTAGGA
* ** * * * **
985664 AGGCAA-GATTTGCTATCTTTAACCAGCTCCACT-ACAACCG-ATGG-
1 AGGCAAGGCTTTG-T-T-TTCGATCTGCTTCACTGTTAA-CGTA-GGA
* *
985708 AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGTAGGA
1 AGGCAAGGCTTTGTTTTCGATCTGCTTCACTGTTAACGTAGGA
985751 AGGCAAG
1 AGGCAAG
985758 ATCTGCTATC
Statistics
Matches: 67, Mismatches: 18, Indels: 18
0.65 0.17 0.17
Matches are distributed among these distances:
42 18 0.27
43 18 0.27
44 11 0.16
45 20 0.30
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (43 bp):
AGGCAAGGCTTTGTTTTCGATCTGCTTCACTGTTAACGTAGGA
Found at i:986068 original size:626 final size:626
Alignment explanation
Indices: 984877--986128 Score: 2236
Period size: 626 Copynumber: 2.0 Consensus size: 626
984867 GCAAGATCAG
** * * * *
984877 CTATCTTTAACCAGCTCCACTGTACTGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTT
1 CTATCTTTAACCAGCTCCACTCAACCGATGGAGGCAAGGCTTTATTTTCGATCTGCTTCACTGTC
* *
984942 AACGTAGAAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTT
66 AACGCAGAAAGGCAAGATCAGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTT
* * * *
985007 GTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGTTATATTTATCCAACTCCACTA
131 GTTTTCGATCTGCTTCACTGTTAACGCAGGAAGGCAAGATCTGCTATATTTAACCAACTCCACTA
985072 CAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTG
196 CAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTG
* *
985137 TTATATTTAACCAACTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGT
261 CTATATTTAACCAACTCCACTACAACCGATGGAGGCAAGGCTTTATTTTCGATCTGCTTCGCTGT
*
985202 TAACGTAGGAAGGCAAGATCTGCTATCTTTAACCAGCTACATTGCAACTAATGGAGGCAAGGTTT
326 TAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTACATTGCAACTAATGGAGGCAAGGTTT
985267 TGTTTTCGATCTTCACTGATCTGTTCTCTAGGGAACATGACCTGTATAATGAACCTAGTTATGCC
391 TGTTTTCGATCTTCACTGATCTGTTCTCTAGGGAACATGACCTGTATAATGAACCTAGTTATGCC
985332 TAATGATTAGGATGGCATGATCAAAATGAATCAAATGCTCCTAACTAGACATGTGTGAATGGTGT
456 TAATGATTAGGATGGCATGATCAAAATGAATCAAATGCTCCTAACTAGACATGTGTGAATGGTGT
985397 TTGCATGAATGCAGAATTTTATTCTTCCGAGAATGATCCCGCTTAGGTTGTCATTACTCGAAGTT
521 TTGCATGAATGCAGAATTTTATTCTTCCGAGAATGATCCCGCTTAGGTTGTCATTACTCGAAGTT
985462 TATTAAGGCTTTGTCACTGAAGTGCTACAACACCCTCCTGC
586 TATTAAGGCTTTGTCACTGAAGTGCTACAACACCCTCCTGC
*
985503 CTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTATTTTTGATCTGCTTCACTGT
1 CTATCTTTAACCAGCTCCACT-CAACCGATGGAGGCAAGGCTTTATTTTCGATCTGCTTCACTGT
* * * *
985568 CAATGCAGGAAGGCAAGATCAGCTATCTTTAACCAGCTCCACTG-TACTGATGGAGGCAAGGCTT
65 CAACGCAGAAAGGCAAGATCAGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTT
* * * *
985632 TGTTTTCGATCTGCTTCACTGTTAACGTAGGAAGGCAAGATTTGCTATCTTTAACCAGCTCCACT
130 TGTTTTCGATCTGCTTCACTGTTAACGCAGGAAGGCAAGATCTGCTATATTTAACCAACTCCACT
*
985697 ACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGTAGGAAGGCAAGATCT
195 ACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCT
* *
985762 GCTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTATTTTCGATCTGCTTCGCTG
260 GCTATATTTAACCAACTCCACTACAACCGATGGAGGCAAGGCTTTATTTTCGATCTGCTTCGCTG
*
985827 TTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTACATTGCAACTAATGGAGGCAAGGTT
325 TTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTACATTGCAACTAATGGAGGCAAGGTT
985892 TTGTTTTCGATCTTCACTGATCTGTTCTCTAGGGAACATGACCTGTATAATGAACCTAGTTATGC
390 TTGTTTTCGATCTTCACTGATCTGTTCTCTAGGGAACATGACCTGTATAATGAACCTAGTTATGC
985957 CTAATGATTAGGATGGCATGATCAAAATGAATCAAATGCTCCTAACTAGACATGTGTGAATGGTG
455 CTAATGATTAGGATGGCATGATCAAAATGAATCAAATGCTCCTAACTAGACATGTGTGAATGGTG
986022 TTTGCATGAATGCAGAATTTTATTCTTCCGAGAATGATCCCGCTTAGGTTGTCATTACTCGAAGT
520 TTTGCATGAATGCAGAATTTTATTCTTCCGAGAATGATCCCGCTTAGGTTGTCATTACTCGAAGT
986087 TTATTAAGGCTTTGTCACTGAAGTGCTACAACACCCTCCTGC
585 TTATTAAGGCTTTGTCACTGAAGTGCTACAACACCCTCCTGC
986129 TCGGCTAGCG
Statistics
Matches: 597, Mismatches: 28, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
626 521 0.87
627 76 0.13
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.31
Consensus pattern (626 bp):
CTATCTTTAACCAGCTCCACTCAACCGATGGAGGCAAGGCTTTATTTTCGATCTGCTTCACTGTC
AACGCAGAAAGGCAAGATCAGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTT
GTTTTCGATCTGCTTCACTGTTAACGCAGGAAGGCAAGATCTGCTATATTTAACCAACTCCACTA
CAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTG
CTATATTTAACCAACTCCACTACAACCGATGGAGGCAAGGCTTTATTTTCGATCTGCTTCGCTGT
TAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTACATTGCAACTAATGGAGGCAAGGTTT
TGTTTTCGATCTTCACTGATCTGTTCTCTAGGGAACATGACCTGTATAATGAACCTAGTTATGCC
TAATGATTAGGATGGCATGATCAAAATGAATCAAATGCTCCTAACTAGACATGTGTGAATGGTGT
TTGCATGAATGCAGAATTTTATTCTTCCGAGAATGATCCCGCTTAGGTTGTCATTACTCGAAGTT
TATTAAGGCTTTGTCACTGAAGTGCTACAACACCCTCCTGC
Found at i:989773 original size:19 final size:20
Alignment explanation
Indices: 989744--989795 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
989734 CATTTTGTAA
* *
989744 AAATCTAATGCACATG-ATG
1 AAATGTAATGCAAATGCATG
*
989763 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
989783 AAATG-AATGCAAA
1 AAATGTAATGCAAA
989796 AAGAGACATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 21 0.75
20 7 0.25
ACGTcount: A:0.46, C:0.13, G:0.17, T:0.23
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:990900 original size:6 final size:6
Alignment explanation
Indices: 990890--990920 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
990880 CTTAGATTTT
*
990890 GAAAAT GAAAAC GAAAAC GAAAAC GAAAAC G
1 GAAAAC GAAAAC GAAAAC GAAAAC GAAAAC G
990921 GGAGTCGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.65, C:0.13, G:0.19, T:0.03
Consensus pattern (6 bp):
GAAAAC
Found at i:992842 original size:13 final size:14
Alignment explanation
Indices: 992813--992851 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
992803 TCTCTGCCTC
* *
992813 ATTTGTCGTTTTCT
1 ATTTGTTGTTCTCT
992827 ATTTGTT-TTCTCT
1 ATTTGTTGTTCTCT
992840 ATTTGTTGTTCT
1 ATTTGTTGTTCT
992852 GTTGGTTGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.08, C:0.13, G:0.13, T:0.67
Consensus pattern (14 bp):
ATTTGTTGTTCTCT
Found at i:1003262 original size:144 final size:144
Alignment explanation
Indices: 1003070--1003373 Score: 459
Period size: 144 Copynumber: 2.1 Consensus size: 144
1003060 TACAAGGAAA
* * *
1003070 AAGGTATTGAACCAACCAGTTTGTTGTCGTAGACATCGAAATAAGTTAAGTTTGATAAGAATCCA
1 AAGGGATTGAACCAACCAGTCTGTTGTCGTAGACATCAAAATAAGTTAAGTTTGATAAGAATCCA
** * * *
1003135 ACTTTAGATGGAATAGATCCATTGATTTTGTTTCCC-ACGAGAATT-AAGTATTTGAGATTTAAT
66 ACTCCAGATGGAATAGATCCATTAATTTTGTTGCCCTA-AAGAATTAAAG-ATTTGAGATTTAAT
* *
1003198 AACTGACCCGAAGCAG
129 AACTAACCCAAAGCAG
*
1003214 AAGGGATTGAACCAACTAGTCTGTTGTCGTAGACATCAAAATAAGTTAAGTTTGATAAGAATCCA
1 AAGGGATTGAACCAACCAGTCTGTTGTCGTAGACATCAAAATAAGTTAAGTTTGATAAGAATCCA
1003279 ACTCCAGATGGAATAGATCCATTAATTTTGTTGCCCTAAAGAATTAAAGATTTGAGATTTAATAA
66 ACTCCAGATGGAATAGATCCATTAATTTTGTTGCCCTAAAGAATTAAAGATTTGAGATTTAATAA
*
1003344 CTAACCCAAAGTAG
131 CTAACCCAAAGCAG
*
1003358 AAGGGATTGGACCAAC
1 AAGGGATTGAACCAAC
1003374 AATTCCACAA
Statistics
Matches: 145, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
144 141 0.97
145 4 0.03
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.29
Consensus pattern (144 bp):
AAGGGATTGAACCAACCAGTCTGTTGTCGTAGACATCAAAATAAGTTAAGTTTGATAAGAATCCA
ACTCCAGATGGAATAGATCCATTAATTTTGTTGCCCTAAAGAATTAAAGATTTGAGATTTAATAA
CTAACCCAAAGCAG
Found at i:1005110 original size:19 final size:19
Alignment explanation
Indices: 1005086--1005122 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
1005076 TAAATTTGAT
*
1005086 ATTATTATTGTTATTATTA
1 ATTATTATTGTAATTATTA
1005105 ATTATTATTGTAATTATT
1 ATTATTATTGTAATTATT
1005123 TGCTCATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (19 bp):
ATTATTATTGTAATTATTA
Found at i:1005194 original size:30 final size:29
Alignment explanation
Indices: 1005159--1005228 Score: 86
Period size: 30 Copynumber: 2.4 Consensus size: 29
1005149 AATCTTCTTT
*
1005159 ATATATATATACACATACATGTGTTTTATA
1 ATATATATATACACATACATAT-TTTTATA
* *
1005189 ATATATATATACATATGCATATTTTTATA
1 ATATATATATACACATACATATTTTTATA
* *
1005218 ATTTATCTATA
1 ATATATATATA
1005229 TATATGTACC
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
29 16 0.46
30 19 0.54
ACGTcount: A:0.40, C:0.09, G:0.04, T:0.47
Consensus pattern (29 bp):
ATATATATATACACATACATATTTTTATA
Found at i:1008058 original size:16 final size:15
Alignment explanation
Indices: 1008021--1008050 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
1008011 TTTTGAAGAC
1008021 CAAAATTAAATATAA
1 CAAAATTAAATATAA
1008036 CATAAATTAAATATA
1 CA-AAATTAAATATA
1008051 TCGAAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 2 0.14
16 12 0.86
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (15 bp):
CAAAATTAAATATAA
Found at i:1013502 original size:44 final size:44
Alignment explanation
Indices: 1013413--1013592 Score: 177
Period size: 44 Copynumber: 4.1 Consensus size: 44
1013403 AAAGGGGACG
* * * *
1013413 AGATTTGTGGTTTTAGTCTGCTCCACTGCAACTTTAGGGAA-ATA
1 AGATTTGTGGCTTCAATCTGCTCCACTGCAACTTCA-GGAAGATA
* * * *
1013457 AGACTGGTGGCTTCAATCTACTCCATTGCAACTTCAGGAAGATA
1 AGATTTGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATA
** * *
1013501 AGATTTGTCACTTCAACCTGC-CTCACTGCAACTTCAAGG-GGATA
1 AGATTTGTGGCTTCAATCTGCTC-CACTGCAACTTC-AGGAAGATA
* * *
1013545 AGGTTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATA
1 AGATTTGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATA
1013589 AGAT
1 AGAT
1013593 CAACCATGAT
Statistics
Matches: 108, Mismatches: 23, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
43 8 0.07
44 96 0.89
45 4 0.04
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.31
Consensus pattern (44 bp):
AGATTTGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATA
Found at i:1013690 original size:51 final size:50
Alignment explanation
Indices: 1013627--1014629 Score: 652
Period size: 51 Copynumber: 20.7 Consensus size: 50
1013617 CCACTATGAT
* * *
1013627 GCCAGGGAAATAAGATTCGCTGCCTTCAGTTTTAATCTGTTCCATTGCAAC
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TTCCACTGCAAC
* * * *
1013678 GCCAAGGAAATAAGATTCTCTTCCTTGAGCTTTAATC--T--ACTGCAAT
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTCCACTGCAAC
* * * ** * *
1013724 GCCAAGGAAATAAGATTTGTTACCTTCAATTTTAATCTGTTTCATTGCAAC
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TTCCACTGCAAC
* ** *
1013775 GCCAAGGAAATGAGATTTACTGCCTTCAGCTTTAATCTATT----T-CGAC
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TTCCACTGCAAC
* * * * *
1013821 ACTAGGGAAATAAGATTCGCTGCCTTTAGCTTTAAACTGTTCCACTGCAAC
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TTCCACTGCAAC
* * * * * * * *
1013872 GCTAATGAAATGAGATTTGCTGCATTCAGTTTTAATC--T--ACTACGAC
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTCCACTGCAAC
* ** * * * *
1013918 GTCGGGGAAATAAGATTCGCTGCCTTCAACTTTAATCTATCCCACTACAAT
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TTCCACTGCAAC
* * *
1013969 GCCAAAGAAATGAGATTCGCTGCCTTCAGCTTTAATC--T--ACTGCAAT
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTCCACTGCAAC
* * * * * *
1014015 GCTAGGGAAATAAGATTCGCTGCCTTAAGGTTTACTCTGTTCCACTGCAAT
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TTCCACTGCAAC
* * ** * * * * *
1014066 ACCAAAGAAATGTGATTCGCTACCTTTAGCTTTAATC--T--ACTACGAG
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTCCACTGCAAC
* * * * * * * *
1014112 GCCAGGGAAATAAGATTTGTTACCTTTAGCTTCAATCTATTCCACTACACC
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TTCCACTGCAAC
* * *
1014163 GCCAAGGAAATAAGATTCACTGCCTTCAGCTTTAATC--T--ACTGCGAT
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTCCACTGCAAC
** *
1014209 GCCAAGGAAATAAGATTTACTACCTTCAGCTTTAATCTGTTCCACTGCAAC
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TTCCACTGCAAC
*
1014260 GCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATC--T--ACT--AGAC
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTCCACTGCA-AC
* * * * * * * * *
1014305 ACTAGGGAAATAAGATTTGGTACCTTCAGCTATAATCTATTCCACCGTAAC
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TTCCACTGCAAC
* * *
1014356 GCCAAGGAAATGAGATTCGCTGTCTTCAGCTTTAATC--T--ACTGCGAC
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTCCACTGCAAC
* ** *
1014402 GCCAGGGAAATAAGATTTACTGCCTTCAACTTTAATCTGTTCCACTGCAAC
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TTCCACTGCAAC
* * * * **
1014453 GCCAAGGCAATATGATTCGCTACCTTCAGGTTTAATC--T--ACTGTGAC
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTCCACTGCAAC
* * * * * *
1014499 ACCAGGGAAATAGGATTTGCTGCCTTCAGCTTTAATCTGTTCCTCTGCAAA
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TTCCACTGCAAC
* * *
1014550 GCAAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATC--T--ACTGCGAC
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTCCACTGCAAC
* * *
1014596 GCCAGGGAAATAAGATTTGCTGACTTCAGCTTTA
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTA
1014630 CAACCCTCGC
Statistics
Matches: 725, Mismatches: 179, Indels: 101
0.72 0.18 0.10
Matches are distributed among these distances:
44 1 0.00
45 31 0.04
46 323 0.45
47 1 0.00
48 9 0.01
49 6 0.01
50 3 0.00
51 350 0.48
52 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (50 bp):
GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTCCACTGCAAC
Found at i:1013750 original size:97 final size:97
Alignment explanation
Indices: 1013627--1014629 Score: 1173
Period size: 97 Copynumber: 10.4 Consensus size: 97
1013617 CCACTATGAT
* * * *
1013627 GCCAGGGAAATAAGATTCGCTGCCTTCAGTTTTAATCTGTTCCATTGCAACGCCAAGGAAATAAG
1 GCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAG
* * * * *
1013692 ATTCTCTTCCTTGAGCTTTAATCTACTGCAAT
66 ATTCGCTGCCTTCAGCTTTAATCTACTGCGAC
* * * ** * *
1013724 GCCAAGGAAATAAGATTTGTTACCTTCAATTTTAATCTGTTTCATTGCAACGCCAAGGAAATGAG
1 GCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAG
** * *
1013789 ATTTACTGCCTTCAGCTTTAATCTATTTCGAC
66 ATTCGCTGCCTTCAGCTTTAATCTACTGCGAC
* * * * * * *
1013821 ACTAGGGAAATAAGATTCGCTGCCTTTAGCTTTAAACTGTTCCACTGCAACGCTAATGAAATGAG
1 GCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAG
* * * *
1013886 ATTTGCTGCATTCAGTTTTAATCTACTACGAC
66 ATTCGCTGCCTTCAGCTTTAATCTACTGCGAC
* * * * * * * * *
1013918 GTCGGGGAAATAAGATTCGCTGCCTTCAACTTTAATCTATCCCACTACAATGCCAAAGAAATGAG
1 GCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAG
* *
1013983 ATTCGCTGCCTTCAGCTTTAATCTACTGCAAT
66 ATTCGCTGCCTTCAGCTTTAATCTACTGCGAC
* * * * * ** * *
1014015 GCTAGGGAAATAAGATTCGCTGCCTTAAGGTTTACTCTGTTCCACTGCAATACCAAAGAAATGTG
1 GCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAG
* * * *
1014080 ATTCGCTACCTTTAGCTTTAATCTACTACGAG
66 ATTCGCTGCCTTCAGCTTTAATCTACTGCGAC
* * * * * * * *
1014112 GCCAGGGAAATAAGATTTGTTACCTTTAGCTTCAATCTATTCCACTACACCGCCAAGGAAATAAG
1 GCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAG
* *
1014177 ATTCACTGCCTTCAGCTTTAATCTACTGCGAT
66 ATTCGCTGCCTTCAGCTTTAATCTACTGCGAC
* * *
1014209 GCCAAGGAAATAAGATTTACTACCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAG
1 GCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAG
*
1014274 ATTCGCTGCCTTCAGCTTTAATCTACT-AGAC
66 ATTCGCTGCCTTCAGCTTTAATCTACTGCGAC
* * * * * * * *
1014305 ACTAGGGAAATAAGATTTGGTACCTTCAGCTATAATCTATTCCACCGTAACGCCAAGGAAATGAG
1 GCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAG
*
1014370 ATTCGCTGTCTTCAGCTTTAATCTACTGCGAC
66 ATTCGCTGCCTTCAGCTTTAATCTACTGCGAC
* * *
1014402 GCCAGGGAAATAAGATTTACTGCCTTCAACTTTAATCTGTTCCACTGCAACGCCAAGGCAAT-AT
1 GCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGA-
* * *
1014466 GATTCGCTACCTTCAGGTTTAATCTACTGTGAC
65 GATTCGCTGCCTTCAGCTTTAATCTACTGCGAC
* * * * *
1014499 ACCAGGGAAATAGGATTTGCTGCCTTCAGCTTTAATCTGTTCCTCTGCAAAGCAAAGGAAATGAG
1 GCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAG
1014564 ATTCGCTGCCTTCAGCTTTAATCTACTGCGAC
66 ATTCGCTGCCTTCAGCTTTAATCTACTGCGAC
*
1014596 GCCAGGGAAATAAGATTTGCTGACTTCAGCTTTA
1 GCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTA
1014630 CAACCCTCGC
Statistics
Matches: 760, Mismatches: 143, Indels: 6
0.84 0.16 0.01
Matches are distributed among these distances:
96 85 0.11
97 674 0.89
98 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (97 bp):
GCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAG
ATTCGCTGCCTTCAGCTTTAATCTACTGCGAC
Found at i:1015560 original size:44 final size:44
Alignment explanation
Indices: 1015504--1015727 Score: 238
Period size: 44 Copynumber: 5.1 Consensus size: 44
1015494 AAAGGGGAAG
* * *
1015504 AGATTTGTGGTTTTAGTCTGCTCCACTGCAACTTCAGGGAAATA
1 AGATTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATA
* * * *
1015548 AGACTGGTGG-TTTCAATCTGCTCCACTGTAACTTCAGGAAGATA
1 AGATTTGTGGCTTT-AATCTGCTCCACTGCAACTTCAGGGAGATA
** * *
1015592 AGATTTGTCACTTCAACCTGC-CTCACTGCAACTTCATGGG-GATA
1 AGATTTGTGGCTTTAATCTGCTC-CACTGCAACTTCA-GGGAGATA
** * *
1015636 AGGGTTGTGGCTTTAATCTGCTCTACTGCAACTTCAGGGGGATA
1 AGATTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATA
* * *
1015680 AGGTTTGTGGCTTTAATCTGCTCCACTACAAGTTCAGGGAGATA
1 AGATTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATA
1015724 AGAT
1 AGAT
1015728 CTACCATGAT
Statistics
Matches: 147, Mismatches: 27, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
43 7 0.05
44 135 0.92
45 5 0.03
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (44 bp):
AGATTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATA
Found at i:1015981 original size:51 final size:51
Alignment explanation
Indices: 1015752--1023150 Score: 3881
Period size: 51 Copynumber: 152.5 Consensus size: 51
1015742 TCAAACCATC
* * *
1015752 CCACTGCAACGCCAAGGAAATAAGATTTGCCGTCTTCAGCTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * *
1015800 --ACTGCGACGCCAAGGAAATAAGATTCGCTGCATTCAGCTTTAAACTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *
1015849 CTACTGTATTAC-CC-A-GAAAGTAAGATTCACTGCCTTCAACTTTAA--T-TT
1 CCACTGCA--ACGCCAAGGAAA-TAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1015897 --ACTACGATG-TAAGGGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTT
1 CCACTGCAACGCCAA-GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* *
1015946 CCACTGCAACGCCAAGGAAATAACATTCGCCGCCTTCAGCTTT-A---G-T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *
1015992 CTACTGCAATGCTAGGGAAATAAGATTCGCTGCCTTCAG-TGTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCT-TTAATCTGTT
* ** * *
1016043 CCACTGCAATGCCAAGGAAATGTGATTCGCTGCCTTTAGTTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * *
1016091 --ACTACGACGGC-AGAGAAATAATATTTGTTGGCTTCAGCTTTAATTTGTT
1 CCACTGCAACGCCAAG-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* **** * * * *
1016140 CTACTGCAAAATTAAGAAAATAAGATTCGTTTCCTTTAGCTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *
1016188 --ACTGCGACGTCAATGAAATAAGATTCGCTTCCTTCAGCTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1016237 CCACTACAATGCCAAAGAAATGAGATTCACTGCCTTCAGCTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1016285 --ACTGTGAA-GCC-AGAGAAATAAGATTCACCGCTTTCAACTTTAATC---T
1 CCACTG-CAACGCCAAG-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * *
1016331 --ACTGCGACGCC-AGGTAAATAAGATTCGCTTCCTTTAGCTTTAATCTGTT
1 CCACTGCAACGCCAAGG-AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * *
1016380 CCACTGGAACGCCAAGAAAATGAGATTCGCTGCCTTCAGCTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
** * * * *
1016428 --ACTGTGACGTC-AGGAAAATAAGATT-ACTTCCTTCAGCTTTAATATGTT
1 CCACTGCAACGCCAAGG-AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * **
1016476 CCAATGCAACGCCAGGGAAATGAGATTCGATGCCTTTAAATTTAATCTAG--
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-GTT
* * * * * *
1016526 --A--GCGACGCTAAGGAAAAAAGATTTGCTGCCTTCAGCTTTAATTTCTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * *
1016573 CCACTGCAATG-CAATGGAAATGAGATTCGCTGCCTTTAGCTTTAATC---T
1 CCACTGCAACGCCAA-GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
1016621 --ACTGCAACACTAGGGAAATAAAATTCGCTACCTTCAACTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
** * *
1016670 CCACTGCAACGGAAATGAAATAAGATTCACTGCCTTCAGCTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1016718 --ACTGCGATGCCAGGGAAATAAGATTCGCTGCCTTCAACTTTAATCTATT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
1016767 CCACTACAACGCCAAGGAAATGAGATTTGCTACGTGCAGCTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * ** * * *
1016815 --ACTGCGATGCCAGGGAAATAAAATTTACTGCCTTTAACTTTAATTTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
1016864 CCACTGTAATGCCAGGGAAATGAGATTTGCTGCCTTTAGCTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1016912 --AATGCGACG-CTAGAGAAATAAGATTTGCTGCCTCCTA-CTTTAATCTGTT
1 CCACTGCAACGCCAAG-GAAATAAGATTCGCTGCCTTC-AGCTTTAATCTGTT
* * * * * *
1016961 CCACTGCAATGCTAAGGAAATGAGATTTGCTACCTTTAGCTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* ** * ** * * * *
1017009 --AATGTGATGTTAAGGAAATAAGATTTGTTGCCCTCAGCTTTAATTTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *
1017058 CCACTACAACGCCAAGGAAAGAAGATTCGCTGTCATCAGCTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * ** * * *
1017109 CCACTGCAATGCCAGGGAAATAAGATTTACTGGCTTTATCTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * *
1017157 --ACTGCGACGCC-AGAGAAATAA-AGTTTGCTGCCTTCAGTTTTAATCTGTT
1 CCACTGCAACGCCAAG-GAAATAAGA-TTCGCTGCCTTCAGCTTTAATCTGTT
* * ** * * *
1017206 CCGCTGTAATACCAAGGAGATGAGATTCGTTGCCTTCAGCTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * **
1017254 --ACTGCGACGCTAGGGAAATAATATTTACTGCCTTCAGCTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * * *
1017303 CCACTACAATGCTAGGGAAATAAAATTTGTTGCCTCCTGCTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * *
1017351 --ACTGCGACGCTAGGGAAATAAGATTTGTTACCGTCAGTTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* ** ** * * * *
1017400 CCACTGCGACTACAAAAAAATGAGATTCTCTAG-CTTTAGCTTTAA--T-AT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCT-GCCTTCAGCTTTAATCTGTT
* * * *
1017448 --ACTGCGACGCCAGGGAAATAAGATTCACTGCCTTCTGCTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *
1017497 CCACTACAACGCTAAGGAAATAAGACTCGCTGCCTTCATCTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1017545 --ACTGCGACGCCAGGGAAATAAGATTTGCTGCATTCAGCTTTAATCTATT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * ** * * * *
1017594 CTACTGCAATGCAAATAAAATGAGATTCACTGCCTTCAACTTGAATCTG--
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1017643 ---CTGCGACGCCAGGGAAATAAGATTTGCTGCCTTTAACTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1017691 CCACTACAACGTCAAGGAAAAAAGATTCACTGCCTTCAGCTTTAAT-T-TA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
** * * *
1017740 CTGC-GCTA-G-C-AGAGAAATAAGATTCGCTACCTTTAGCTTTAATCTGTT
1 CCACTGCAACGCCAAG-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *
1017788 CCACTGCAACACTAAGGAAATGAGATTTGCTGCCTTCAGCTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * *** * *
1017836 --ACTGCGATG-CAAGGGAAATAAGATTTATTGGCTTCAACTTTAATCTGTT
1 CCACTGCAACGCCAA-GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
1017885 CCACTTCAACGACAAGGAAATGAGATTTGTTCCCTTCAGCTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *
1017933 --ACTACGACG-CTAGAGAAATAAGATGT-GCTGCCTTCTGC-----T-T-TT
1 CCACTGCAACGCCAAG-GAAATAAGAT-TCGCTGCCTTCAGCTTTAATCTGTT
* * * * **
1017975 CCACTCCTACGCTAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTAAT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* ** * * *
1018026 --AC-G--ATGCCAAGGAAATAAGATTTACTTCTTTCAGCTTTAATTTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
1018072 CCACTGTAATGTCAAGGAAATTA-ATTCGCTGTCATCAGCTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1018122 CTACTGCAATGCTAAGGAAATAAGATTCGCTGGCTTTAGCTTT-A---G-T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * *
1018168 CTATTGCGACGTCAGGGAAATAAGATTTGGTGCCTTCTGCTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
1018219 CTACTACAACTCCAAGGAAATAAAATTTGCTGCCTTCAACTTTAA-----T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *
1018265 CAACTGCGACGACAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1018316 CCACTGCAACACCAAAGAAATGAGATTTGCTACCTTCAGCTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * ** * *
1018364 --AATGCGACGCCAAGGAAATAAGATTTGCTACCTTCAATTTTAATTTGAT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * **
1018413 CCACTACAATGCCAAGAAAATGAGATTCGCTGCCGTCAGCTACAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * *
1018464 CCACTGCAACGCCAACGAAATAAGATTCGCTACCTTCAGCTTGAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *
1018512 --ACTGCGATGACAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *** *
1018561 CTACTACAATGCCAAGGAAATAAGATTTATTGCCTTCAGCTTTAATATGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *
1018612 CCACTGCAACGCTAAGGAAATAAGATTCACTGCCTTAAGGTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * *
1018660 --ACT-CTAACGCC-AGCGAAATAAGATTTGCTGCCTTCAACTTTAATCAGTT
1 CCACTGC-AACGCCAAG-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * *
1018709 CAACTGCAACGCCAAGGAAATGAGAGTT-GCTGCCTTCAGCTTTCATC---T
1 CCACTGCAACGCCAAGGAAATAAGA-TTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1018757 --AATGCGATGCCAAGGAAATAAGATTTGCTGCCTTCAGCTTTAATTTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * *
1018806 CCACTGCAATGCCAAGGAAAT-GGAATTCGCTGCTTTCAGCTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAG-ATTCGCTGCCTTCAGCTTTAATCTGTT
* * ** * *
1018857 CCACTGCAACGCCAGGGAAATAAGAGTCATTGGCTTTAGCTTT-A---G-T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * *
1018903 CTACTGCGACGTCAGGGAAATAAGATTTGTTGCCTTCTA-CTTTACTTTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTC-AGCTTTAATCTGTT
* * *
1018954 CTACTGCAACGGCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * *
1019005 CTACTGAAACACCAAGGAAATAAGATTCACCGCCTTTACCTTT-A---G-T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * *** * *
1019051 CTATTGCGGTGCCAGGGAAATAAGATTC-CTTGCCTTCAGTTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGC-TGCCTTCAGCTTTAATCTGTT
* * * * * *
1019102 CCACTACAAAGGCAAGGAGATGAGATTCGCTGCCTTCAGCTTTAACCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *
1019153 CCACTGCAATGCTAAGGAAATAAGATTTGCTACCTTCAGCTTTAA--T-TT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
1019201 --ACTACGACGACATGGAAATAA-AGTTCGCTACCTTCAGTTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGA-TTCGCTGCCTTCAGCTTTAATCTGTT
** * *
1019250 CCACTGCAACGCCAAGGAAATAAGATTTACTGCCTTCAACTTTAATATGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
** * *
1019301 CCACTGCAACGCCAAGGAAATAAGATTTACTGCCTTCAACTTTAATATGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *
1019352 CCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTAAACTTT-AGC--TT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
1019400 --ACTGCGACGCCAGGGATATAAGATTCACTGCCTTTAGCGTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
1019449 TCACTGCAATGCCAAGAAAATGAGATTCGCTGCATTCAACTTTAA-C----
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
1019495 CTACTGCGACGCCAGGGAAATAAGATTCACTGGCTTCAGGTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
** * *
1019546 CCACTGCAACGCTTAGGAAATAAGATTCGATGCCTTCAGCTTTAATCTATT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
** * * *
1019597 --AC-G--ACGTTAGGGAAATGAGATTCGCTGCCTTCAGCTTTAATTTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
** * *
1019643 CCACTGTGATGCCAAAGG-AATAAGATTCGCTTCCTTCAGCTTTAATC---T
1 CCACTGCAACGCC-AAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *
1019691 --ACTGCAACACCAGGGAAATGAGATTTGCTGCCTTCAAG-TTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTC-AGCTTTAATCTGTT
* * * *
1019737 --ACTACGACTCC-AGGTAAATAAGATTCGCTGCCTTTAGCTTTAATCTGTT
1 CCACTGCAACGCCAAGG-AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * *
1019786 CCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * ** * *
1019834 --ACTACGATGCCAGGGAAATAAGATTTACTACATTCAGCTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *
1019883 CCACTGCAATGCCAGGGAAAAAAGATTTGCTGCCTTCAGCTTTAATCTG--
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
** * * * ** *
1019932 ---CTGTGATGCTAGGGAAATAAGATTTACTACCTTCAGCTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1019980 CCACTACAAC-ACAATCGAAATAAGATTCACTGCCTTCAGTTTTAATC---T
1 CCACTGCAACGCCAA-GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *
1020028 --ACTACGACGCCAAGGAAATAAGATTCACTGCCTTCAGTTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *
1020074 --ACTACGACGCCAAGGAAATAAGATTCACT-ACTTCAGCTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
1020122 CCACTGCAATGCCAGGGAAATGAGATTTGTTGCCTTCAGTTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1020170 --ACTACTACG-CTAGAGAAATAAGATTTGCTGCCTT---C--T-A-CTTTT
1 CCACTGCAACGCCAAG-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * **
1020212 CCACTACTACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTAAT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *
1020263 --AC-G--ACGCCAAGGAAATAAGATTTGCTTCTTTCAGCTTTAATTTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1020309 CCACTGTAATGCAAAGGAAATGTA-ATTCGCTGTCGTT-AGCTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAAT-AAGATTCGCTG-CCTTCAGCTTTAATCTGTT
* **** ** * * *
1020360 CTACTGCAATATTAAGGAAATAAGATTTTCTGGCTTTAGC--T--TCAG-T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * *
1020406 CTATTGCGACGTCAGGGAAATAAGATTTGGTGCCTTCTGCTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
** * * * * *
1020457 ATACTACAACTCCAAGGAAATAAAATTTGCTGCCTTCAACTTTAA-----T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* ** * *
1020503 CAACTGTGACGACAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1020554 CCACTGCAACACCAAAGAAATGAGATTTGCTACCTTCAGCTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * *
1020602 --AATGCGATGCCAAGGAAATAAGATTTGCTACCTTCA-ATTGTAATTTGAT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTT-TAATCTGTT
* * ** * *
1020651 CCACTGCAATGCCAAGAAAATGGGATTCGCTGCCATCAGCTATAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *
1020702 CCACTACAACGCCAACGAAATAAGATTCGCTACCTTCAGCTTGAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
** * *
1020750 --ACTGTGATGACAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *** *
1020799 CTACTACAATGCCAAGGAAATAAGATTTATTGCCTTCAGCTTTAATATGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1020850 CCACTGTAA--CTAAGGAAATAAGATTCACTGCCTTAAGGTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1020896 ACTCTG--ACGCC-AGCGAAATAAGATTTGCTGCCTTCAACTTTAATCAGTT
1 CCACTGCAACGCCAAG-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * ** * * *
1020945 CAACTGCAACGCCAAGGAAAT-GGATTTTCTACCTTTAGCTTTCATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1020992 --AATGCGATGCCAAGGAAATAAGATTTGCTGCCTTCAGCTTTAATTTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *
1021041 CCACTGCAATGCCAAGGAAAT-GGAATTCGTTGCTTTCAGCTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAG-ATTCGCTGCCTTCAGCTTTAATCTGTT
* * ** * * *
1021092 CCACTGCAAC-ACAGGGGAAATAAGAGCCGTTGGCTTTAGCTTT-A---G-T
1 CCACTGCAACGCCA-AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * * *
1021138 CTACTACGACGTCAGGGAAATAAGATTTGTTGCCTTCTGCTTTACTCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
** * *
1021189 ATACTGCAACGGCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
1021240 CTACTGAAACGCCAAGGAAATAAGATTCACCGCCTTTACCTTT-A---G-T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * *** *
1021286 CTATTGCGGTGCCAGGGAAATAAGATTC-CTTGCCTTCAGCTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGC-TGCCTTCAGCTTTAATCTGTT
* * * * *
1021337 CCACTACAACGGCAAGGAGATGAGATTCGCTGCCTTCAGCTTTAACCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *
1021388 CCACTGCAATGCTAAGGAAATAAGATTTGCTACCTTCAGCTTTAA--T-TT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
1021436 --ACTACGACGACATGGAAATAA-AGTTCGCTACCTTCAGTTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGA-TTCGCTGCCTTCAGCTTTAATCTGTT
** ** *
1021485 CCACTGCAACGCCAAGGAAATAAGATTTACTGCCTTCAATTTTAATATGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
** ** *
1021536 CCACTGCAACGCCAAGGAAATAAGATTTACTGCCTTCAATTTTAATATGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * *
1021587 CCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTCAACTTT-AGC--TT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1021635 --ACTGCGACGCCAGGGATATAAGATTCACTGCCTTTAG-TGTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCT-TTAATCTGTT
* * * *
1021684 CCACTGCAATGCCAAGAAAATGAGATTCGCTGCATTCAGCTTTAA-C----
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * *
1021730 CTACTGCGATGCCAGGGAAATAAGATTCACTGGCTTCAGGTCTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* ** * *
1021781 CTACTGCAACGCTTAGGAAATAAGATTCGATGCCTTCAGCTTTAATCTATT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
**** * * *
1021832 --AC-G--ACGTTGGGGAAATGAGGTTCGCTGCCTTCAGCTTTAATTTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* ** * * *
1021878 CAACTGTGATGCCAAAGG-AATAAGATTCACTTCCTTCAGCTTTAATC---T
1 CCACTGCAACGCC-AAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * **
1021926 --ACTGCAACACCAGGGAAATGTGATTCGCTGCCTTCAAG-TTTAA-C----
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTC-AGCTTTAATCTGTT
* * * * *
1021970 CTACTACGACTCC-AGGTAAATAAGATTCGCTGCCTTTAGCTTTAATCTGTT
1 CCACTGCAACGCCAAGG-AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * *
1022021 CCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * ** * *
1022069 --ACTACGATGCCAGGGAAATAAGATTTACTACATTCAGCTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *
1022118 CCACTGCAATGCCAGGGAAAAAAGATTTGCTGCCTTCAGCTTTAATCTG--
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
** * * * ** *
1022167 ---CTGTGATGCTAGGGAAATAAGATTTACTACCTTCAGCTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1022215 CCACTACAAC-ACAATCGAAATAAGATTCACTGCCTTCAGTTTTAATC---T
1 CCACTGCAACGCCAA-GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
1022263 --ACTACGATGCCAGGGAAATAAGATTCACTGCCTTCAGTTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1022309 --ACTACGATGCCAGGGAAATAAGATTCACTG-CTTCAGCTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
** * *
1022357 CCACTGCAACGAAAAAGAAATAAGATTCGC-GACCTTCAGGTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTG-CCTTCAGCTTTAATCTGTT
* * * * * * *
1022405 --ACAGCGACGCCAGGGAAATAAAATCCACTGGCTTCAGCTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
** * * * *
1022454 CCACTGCAACGCTGAGGGAATAAGACTCG-TGTCCTTCTGATTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTG-CCTTCAGCTTTAATCTGTT
* * * *
1022502 --ACTGCCACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTG
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-GTT
* * * * *
1022552 CGAC-GCCAATGCCAAAGAAATGAGATTCACTGCCTTCAGCTTTAA--T-TT
1 CCACTG-CAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1022600 --ACTACAACGGCAGGGAAATAAGATTTGCTGCCTTTAGCTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1022646 --ACTGCGACGCCAGGGAAATAAGATTCGTTGCCTTGAGATTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * *
1022695 CCACTGCAACGCCAAAGAAATAAGATTCGCTTCCTTCTGCTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
1022743 --ACTTCGAC-CCCAGGAAATAAGATTCGTTACCTTCAACTTTAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * *
1022791 CCACTACAACGCCAAGGAAATGAGA-T---T-CATTCAGCTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * ** *
1022834 --ACTGTGACCCCCTGGGAAATAAGATTCGCTACCTTCAGCTTTAATCTGTT
1 CCACTG-CAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * *
1022884 CCACTACAACGCCAAGGAAATGAGATTCACTGCCTTCAGCTTTAA-C----
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * ** * * *
1022930 CTACTGCGACGCTAGGGAAATAAGATTTACTACCTTCAACTTGAATCTGTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1022981 CCACTACAACGCGAGGGAAATGAGATTCGCTGCCTTTAGCTTTAATC---T
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
1023029 --ACTGCGACG-CTAGGAAAATAAGATTTGTTGTCTTCAGCTTTCATC---T
1 CCACTGCAACGCCAAGG-AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
1023075 --ACTCCGATGCCAAGGAAATAAGATTTGTTGCCTTCAGCTTTAATCTATT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *
1023124 CCACTACAACGCTAAAGAAATGAGATT
1 CCACTGCAACGCCAAGGAAATAAGATT
1023151 ATTGGCTTTA
Statistics
Matches: 5606, Mismatches: 1294, Indels: 899
0.72 0.17 0.12
Matches are distributed among these distances:
39 1 0.00
40 1 0.00
41 5 0.00
42 15 0.00
43 3 0.00
44 56 0.01
45 147 0.03
46 2307 0.41
47 68 0.01
48 69 0.01
49 99 0.02
50 165 0.03
51 2580 0.46
52 88 0.02
53 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (51 bp):
CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
Found at i:1016070 original size:148 final size:148
Alignment explanation
Indices: 1015752--1022928 Score: 3398
Period size: 148 Copynumber: 49.3 Consensus size: 148
1015742 TCAAACCATC
* * * *
1015752 CCACTGCAACGCCAAGGAAATAAGATTTGCCGTCTTCAGCTTTAATC---T--ACTGCGACGCCA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* *
1015812 AGGAAATAAGATTCGCTGCATTCAGCTTTAAACTGTTCTACTGTATTAC-CC-A-GAAAGTAAGA
66 AGGAAATAAGATTCGCTGCCTTCAGCTTT--A--G-TCTACTGCA--ACGCCAAGGAAA-TAAGA
* *
1015874 TTCACTGCCTTCAACTTTAA--T-TT
123 TTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
1015897 --ACTACGATG-TAAGGGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCC
1 CCACTGCAACGCCAA-GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCC
* * * * *
1015959 AAGGAAATAACATTCGCCGCCTTCAGCTTTAGTCTACTGCAATGCTAGGGAAATAAGATTCGCTG
65 AAGGAAATAAGATTCGCTGCCTTCAGCTTTAGTCTACTGCAACGCCAAGGAAATAAGATTCGCTG
1016024 CCTTCAG-TGTTAATCTGTT
130 CCTTCAGCT-TTAATCTGTT
* ** * * * * *
1016043 CCACTGCAATGCCAAGGAAATGTGATTCGCTGCCTTTAGTTTTAATC---T--ACTACGACGGC-
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * * * **** *
1016102 AGAGAAATAATATTTGTTGGCTTCAGCTTTAATTTGTTCTACTGCAAAATTAAGAAAATAAGATT
66 AG-GAAATAAGATTCGCTGCCTTCAGCTTT-A---G-TCTACTGCAACGCCAAGGAAATAAGATT
* * *
1016167 CGTTTCCTTTAGCTTTAATC---T
125 CGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
1016188 --ACTGCGACGTCAATGAAATAAGATTCGCTTCCTTCAGCTTTAATCTGTTCCACTACAATGCCA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * * * * * *
1016251 AAGAAATGAGATTCACTGCCTTCAGCTTTAATCTACTGTGAA-GCC-AGAGAAATAAGATTCACC
66 AGGAAATAAGATTCGCTGCCTTCAGCTTTAGTCTACTG-CAACGCCAAG-GAAATAAGATTCGCT
* *
1016314 GCTTTCAACTTTAATC---T
129 GCCTTCAGCTTTAATCTGTT
* * * *
1016331 --ACTGCGACGCC-AGGTAAATAAGATTCGCTTCCTTTAGCTTTAATCTGTTCCACTGGAACGCC
1 CCACTGCAACGCCAAGG-AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCC
* * * ** * *
1016393 AAGAAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTGTGACGTC-AGGAAAATAAGATT-ACT
65 AAGGAAATAAGATTCGCTGCCTTCAGCTTTAGTCTACTGCAACGCCAAGG-AAATAAGATTCGCT
* *
1016456 TCCTTCAGCTTTAATATGTT
129 GCCTTCAGCTTTAATCTGTT
* * * * * ** * *
1016476 CCAATGCAACGCCAGGGAAATGAGATTCGATGCCTTTAAATTTAATCTAG----A--GCGACGCT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-GTTCCACTGCAACGCC
* * * * *
1016535 AAGGAAAAAAGATTTGCTGCCTTCAGCTTTAATTTCTTCCACTGCAATG-CAATGGAAATGAGAT
65 AAGGAAATAAGATTCGCTGCCTTCAGCTTT-A-GTC-T--ACTGCAACGCCAA-GGAAATAAGAT
*
1016599 TCGCTGCCTTTAGCTTTAATC---T
124 TCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * **
1016621 --ACTGCAACACTAGGGAAATAAAATTCGCTACCTTCAACTTTAATCTGTTCCACTGCAACGGAA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * * * * *
1016684 ATGAAATAAGATTCACTGCCTTCAGCTTTAATCTACTGCGATGCCAGGGAAATAAGATTCGCTGC
66 AGGAAATAAGATTCGCTGCCTTCAGCTTTAGTCTACTGCAACGCCAAGGAAATAAGATTCGCTGC
* *
1016749 CTTCAACTTTAATCTATT
131 CTTCAGCTTTAATCTGTT
* * * * * * * *
1016767 CCACTACAACGCCAAGGAAATGAGATTTGCTACGTGCAGCTTTAATC---T--ACTGCGATGCCA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * ** * * * * * * * *
1016827 GGGAAATAAAATTTACTGCCTTTAACTTTAATTTGTTCCACTGTAATGCCAGGGAAATGAGATTT
66 AGGAAATAAGATTCGCTGCCTTCAGCTTT-A---G-TCTACTGCAACGCCAAGGAAATAAGATTC
*
1016892 GCTGCCTTTAGCTTTAATC---T
126 GCTGCCTTCAGCTTTAATCTGTT
* * * * * *
1016912 --AATGCGACG-CTAGAGAAATAAGATTTGCTGCCTCCTA-CTTTAATCTGTTCCACTGCAATGC
1 CCACTGCAACGCCAAG-GAAATAAGATTCGCTGCCTTC-AGCTTTAATCTGTTCCACTGCAACGC
* * * * * * * ** * ** * *
1016973 TAAGGAAATGAGATTTGCTACCTTTAGCTTTAATCTAATGTGATGTTAAGGAAATAAGATTTGTT
64 CAAGGAAATAAGATTCGCTGCCTTCAGCTTTAGTCTACTGCAACGCCAAGGAAATAAGATTCGCT
* *
1017038 GCCCTCAGCTTTAATTTGTT
129 GCCTTCAGCTTTAATCTGTT
* * * * *
1017058 CCACTACAACGCCAAGGAAAGAAGATTCGCTGTCATCAGCTTTAATCTGTTCCACTGCAATGCCA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* ** * * * * * *
1017123 GGGAAATAAGATTTACTGGCTTTATCTTTAATCTACTGCGACGCC-AGAGAAATAA-AGTTTGCT
66 AGGAAATAAGATTCGCTGCCTTCAGCTTTAGTCTACTGCAACGCCAAG-GAAATAAGA-TTCGCT
*
1017186 GCCTTCAGTTTTAATCTGTT
129 GCCTTCAGCTTTAATCTGTT
* * ** * * * * *
1017206 CCGCTGTAATACCAAGGAGATGAGATTCGTTGCCTTCAGCTTTAATC---T--ACTGCGACGCTA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * ** * * * * * * *
1017266 GGGAAATAATATTTACTGCCTTCAGCTTTAATCTGTTCCACTACAATGCTAGGGAAATAAAATTT
66 AGGAAATAAGATTCGCTGCCTTCAGCTTT-A---G-TCTACTGCAACGCCAAGGAAATAAGATTC
* * *
1017331 GTTGCCTCCTGCTTTAATC---T
126 GCTGCCTTCAGCTTTAATCTGTT
* * * * * * * * * **
1017351 --ACTGCGACGCTAGGGAAATAAGATTTGTTACCGTCAGTTTTAATCTGTTCCACTGCGACTACA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
** * * * * * * * *
1017414 AAAAAATGAGATTCTCTAG-CTTTAGCTTTAATATACTGCGACGCCAGGGAAATAAGATTCACTG
66 AGGAAATAAGATTCGCT-GCCTTCAGCTTTAGTCTACTGCAACGCCAAGGAAATAAGATTCGCTG
*
1017478 CCTTCTGCTTTAATCTGTT
130 CCTTCAGCTTTAATCTGTT
* * * * *
1017497 CCACTACAACGCTAAGGAAATAAGACTCGCTGCCTTCATCTTTAATC---T--ACTGCGACGCCA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * * * * * ** *
1017557 GGGAAATAAGATTTGCTGCATTCAGCTTTAATCTATTCTACTGCAATGCAAATAAAATGAGATTC
66 AGGAAATAAGATTCGCTGCCTTCAGC--T--T-TAGTCTACTGCAACGCCAAGGAAATAAGATTC
* * *
1017622 ACTGCCTTCAACTTGAATCTG--
126 GCTGCCTTCAGCTTTAATCTGTT
* * * * * * *
1017643 ---CTGCGACGCCAGGGAAATAAGATTTGCTGCCTTTAACTTTAATCTGTTCCACTACAACGTCA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * * * *
1017705 AGGAAAAAAGATTCACTGCCTTCAGCTTTAATTTACTG---CGCTAGCAGAGAAATAAGATTCGC
66 AGGAAATAAGATTCGCTGCCTTCAGCTTTAGTCTACTGCAACGCCA--AG-GAAATAAGATTCGC
* *
1017767 TACCTTTAGCTTTAATCTGTT
128 TGCCTTCAGCTTTAATCTGTT
* * * * * *
1017788 CCACTGCAACACTAAGGAAATGAGATTTGCTGCCTTCAGCTTTAATC---T--ACTGCGATG-CA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
*** * * * * * *
1017847 AGGGAAATAAGATTTATTGGCTTCAACTTTAATCTGTTCCACTTCAACGACAAGGAAATGAGATT
66 A-GGAAATAAGATTCGCTGCCTTCAGCTTT-A---G-TCTACTGCAACGCCAAGGAAATAAGATT
* * *
1017912 TGTTCCCTTCAGCTTTAATC---T
125 CGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
1017933 --ACTACGACG-CTAGAGAAATAAGATGT-GCTGCCTTCTGC-----T-T-TTCCACTCCTACGC
1 CCACTGCAACGCCAAG-GAAATAAGAT-TCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGC
* * * * * * * **
1017987 TAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTAATACGATGCCAAGGAAATAAGATTTACT
64 CAAGGAAATAAGATTCGCTGCCTTCAGCTTTAGTCTACTGCAACGCCAAGGAAATAAGATTCGCT
* * *
1018052 TCTTTCAGCTTTAATTTGTT
129 GCCTTCAGCTTTAATCTGTT
* * * * * * * * *
1018072 CCACTGTAATGTCAAGGAAATTA-ATTCGCTGTCATCAGCTTTAATCTGTTCTACTGCAATGCTA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * * * * * * *
1018136 AGGAAATAAGATTCGCTGGCTTTAGCTTTAGTCTATTGCGACGTCAGGGAAATAAGATTTGGTGC
66 AGGAAATAAGATTCGCTGCCTTCAGCTTTAGTCTACTGCAACGCCAAGGAAATAAGATTCGCTGC
*
1018201 CTTCTGCTTTAATCTGTT
131 CTTCAGCTTTAATCTGTT
* * * * * * * * *
1018219 CTACTACAACTCCAAGGAAATAAAATTTGCTGCCTTCAACTTTAA-----TCAACTGCGACGACA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * * * * *
1018279 GGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACACCAAAGAAATGAGATTT
66 AGGAAATAAGATTCGCTGCCTTCAGCTTT-A---G-TCTACTGCAACGCCAAGGAAATAAGATTC
*
1018344 GCTACCTTCAGCTTTAATC---T
126 GCTGCCTTCAGCTTTAATCTGTT
* * * * ** * * * *
1018364 --AATGCGACGCCAAGGAAATAAGATTTGCTACCTTCAATTTTAATTTGATCCACTACAATGCCA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * * * *
1018427 AGAAAATGAGATTCGCTGCCGTCAGCTACAATCT-GTTCCACTGCAACGCCAACGAAATAAGATT
66 AGGAAATAAGATTCGCTGCCTTCAGCT----T-TAG-TCTACTGCAACGCCAAGGAAATAAGATT
* *
1018491 CGCTACCTTCAGCTTGAATC---T
125 CGCTGCCTTCAGCTTTAATCTGTT
* * * * * * *
1018512 --ACTGCGATGACAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCTACTACAATGCCA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
*** * *
1018575 AGGAAATAAGATTTATTGCCTTCAGCTTTAATATGTTCCACTGCAACGCTAAGGAAATAAGATTC
66 AGGAAATAAGATTCGCTGCCTTCAGC-TT--TA-G-TCTACTGCAACGCCAAGGAAATAAGATTC
* * *
1018640 ACTGCCTTAAGGTTTAATC---T
126 GCTGCCTTCAGCTTTAATCTGTT
* * * *
1018660 --ACT-CTAACGCC-AGCGAAATAAGATTTGCTGCCTTCAACTTTAATCAGTTCAACTGCAACGC
1 CCACTGC-AACGCCAAG-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGC
* * * * *
1018721 CAAGGAAATGAGAGTT-GCTGCCTTCAGCTTTCA-TCTAATGCGATGCCAAGGAAATAAGATTTG
64 CAAGGAAATAAGA-TTCGCTGCCTTCAGCTTT-AGTCTACTGCAACGCCAAGGAAATAAGATTCG
*
1018784 CTGCCTTCAGCTTTAATTTGTT
127 CTGCCTTCAGCTTTAATCTGTT
* * *
1018806 CCACTGCAATGCCAAGGAAAT-GGAATTCGCTGCTTTCAGCTTTAATCTGTTCCACTGCAACGCC
1 CCACTGCAACGCCAAGGAAATAAG-ATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCC
* * ** * * * * * * *
1018870 AGGGAAATAAGAGTCATTGGCTTTAGCTTTAGTCTACTGCGACGTCAGGGAAATAAGATTTGTTG
65 AAGGAAATAAGATTCGCTGCCTTCAGCTTTAGTCTACTGCAACGCCAAGGAAATAAGATTCGCTG
* *
1018935 CCTTCTA-CTTTACTTTGTT
130 CCTTC-AGCTTTAATCTGTT
* * * * * *
1018954 CTACTGCAACGGCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCTACTGAAACACCA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * * * * *** *
1019019 AGGAAATAAGATTCACCGCCTTTACCTTTAGTCTATTGCGGTGCCAGGGAAATAAGATTC-CTTG
66 AGGAAATAAGATTCGCTGCCTTCAGCTTTAGTCTACTGCAACGCCAAGGAAATAAGATTCGC-TG
*
1019083 CCTTCAGTTTTAATCTGTT
130 CCTTCAGCTTTAATCTGTT
* * * * * * * *
1019102 CCACTACAAAGGCAAGGAGATGAGATTCGCTGCCTTCAGCTTTAACCTGTTCCACTGCAATGCTA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * * * * * * * *
1019167 AGGAAATAAGATTTGCTACCTTCAGCTTTAATTTACTACGACGACATGGAAATAA-AGTTCGCTA
66 AGGAAATAAGATTCGCTGCCTTCAGCTTTAGTCTACTGCAACGCCAAGGAAATAAGA-TTCGCTG
*
1019231 CCTTCAGTTTTAATCTGTT
130 CCTTCAGCTTTAATCTGTT
** * *
1019250 CCACTGCAACGCCAAGGAAATAAGATTTACTGCCTTCAACTTTAATATGTTCCACTGCAACGCCA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
** * *
1019315 AGGAAATAAGATTTACTGCCTTCAACTTTAATATGTTCCACTGCAACGCCAAGGAAATAAGATTC
66 AGGAAATAAGATTCGCTGCCTTCAGC-TT--TA-G-TCTACTGCAACGCCAAGGAAATAAGATTC
* * * *
1019380 TCTGCCTTAAACTTT-AGC--TT
126 GCTGCCTTCAGCTTTAATCTGTT
* * * * * * * *
1019400 --ACTGCGACGCCAGGGATATAAGATTCACTGCCTTTAGCGTTAATCTGTTTCACTGCAATGCCA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * * * ** * * * *
1019463 AGAAAATGAGATTCGCTGCATTCAACTTTAACCTACTGCGACGCCAGGGAAATAAGATTCACTGG
66 AGGAAATAAGATTCGCTGCCTTCAGCTTTAGTCTACTGCAACGCCAAGGAAATAAGATTCGCTGC
*
1019528 CTTCAGGTTTAATCTGTT
131 CTTCAGCTTTAATCTGTT
** * * **
1019546 CCACTGCAACGCTTAGGAAATAAGATTCGATGCCTTCAGCTTTAATCTATT--AC-G--ACGTTA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * * ** *
1019606 GGGAAATGAGATTCGCTGCCTTCAGCTTTAATTTGTTCCACTGTGATGCCAAAGG-AATAAGATT
66 AGGAAATAAGATTCGCTGCCTTCAGCTTT-A---G-TCTACTGCAACGCC-AAGGAAATAAGATT
*
1019670 CGCTTCCTTCAGCTTTAATC---T
125 CGCTGCCTTCAGCTTTAATCTGTT
* * * * * * *
1019691 --ACTGCAACACCAGGGAAATGAGATTTGCTGCCTTCAAG-TTTAATC---T--ACTACGACTCC
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTC-AGCTTTAATCTGTTCCACTGCAACGCC
* * *
1019748 -AGGTAAATAAGATTCGCTGCCTTTAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGAT
65 AAGG-AAATAAGATTCGCTGCCTTCAGCTTT-A---G-TCTACTGCAACGCCAAGGAAATAAGAT
* *
1019812 TCACCGCCTTCAGCTTTAATC---T
124 TCGCTGCCTTCAGCTTTAATCTGTT
* * * * ** * * *
1019834 --ACTACGATGCCAGGGAAATAAGATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * * * * ** * * * ** *
1019897 GGGAAAAAAGATTTGCTGCCTTCAGCTTTAATCTGCTGTGATGCTAGGGAAATAAGATTTACTAC
66 AGGAAATAAGATTCGCTGCCTTCAGCTTTAGTCTACTGCAACGCCAAGGAAATAAGATTCGCTGC
1019962 CTTCAGCTTTAATCTGTT
131 CTTCAGCTTTAATCTGTT
* * * * * * *
1019980 CCACTACAAC-ACAATCGAAATAAGATTCACTGCCTTCAGTTTTAATC---T--ACTACGACGCC
1 CCACTGCAACGCCAA-GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCC
* * * * * *
1020039 AAGGAAATAAGATTCACTGCCTTCAGTTTTAATCTACTACGACGCCAAGGAAATAAGATTCACT-
65 AAGGAAATAAGATTCGCTGCCTTCAGCTTTAGTCTACTGCAACGCCAAGGAAATAAGATTCGCTG
*
1020103 ACTTCAGCTTTAATCTGTT
130 CCTTCAGCTTTAATCTGTT
* * * * * * * * *
1020122 CCACTGCAATGCCAGGGAAATGAGATTTGTTGCCTTCAGTTTTAATC---T--ACTACTACG-CT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * * * *
1020181 AGAGAAATAAGATTTGCTGCCTTCTA-CTTT--TCCACTACTACGCCAAGGAAATGAGATTCGCT
66 AG-GAAATAAGATTCGCTGCCTTC-AGCTTTAGTCTACTGCAACGCCAAGGAAATAAGATTCGCT
**
1020243 GCCTTCAGCTTTAATCTAAT
129 GCCTTCAGCTTTAATCTGTT
* * * * * * *
1020263 --AC-G--ACGCCAAGGAAATAAGATTTGCTTCTTTCAGCTTTAATTTGTTCCACTGTAATGCAA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * ****
1020323 AGGAAATGTA-ATTCGCTGTCGTT-AGCTTTAATCTGTTCTACTGCAATATTAAGGAAATAAGAT
66 AGGAAAT-AAGATTCGCTG-CCTTCAGCTTT-A---G-TCTACTGCAACGCCAAGGAAATAAGAT
** * * *
1020386 TTTCTGGCTTTAGC--T--TCAG-T
124 TCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * * ** * *
1020406 CTATTGCGACGTCAGGGAAATAAGATTTGGTGCCTTCTGCTTTAATCTGTTATACTACAACTCCA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * * * * ** * *
1020471 AGGAAATAAAATTTGCTGCCTTCAACTTTAATCAACTGTGACGACAGGGAAATAAGATTCGCTGC
66 AGGAAATAAGATTCGCTGCCTTCAGCTTTAGTCTACTGCAACGCCAAGGAAATAAGATTCGCTGC
1020536 CTTCAGCTTTAATCTGTT
131 CTTCAGCTTTAATCTGTT
* * * * * * * *
1020554 CCACTGCAACACCAAAGAAATGAGATTTGCTACCTTCAGCTTTAATC---T--AATGCGATGCCA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * * * * * **
1020614 AGGAAATAAGATTTGCTACCTTCAATTG-TAATTTGATCCACTGCAATGCCAAGAAAATGGGATT
66 AGGAAATAAGATTCGCTGCCTTC-A--GCT--TTAG-TCTACTGCAACGCCAAGGAAATAAGATT
* *
1020678 CGCTGCCATCAGCTATAATCTGTT
125 CGCTGCCTTCAGCTTTAATCTGTT
* * * * ** * *
1020702 CCACTACAACGCCAACGAAATAAGATTCGCTACCTTCAGCTTGAATC---T--ACTGTGATGACA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * *
1020762 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAGGAAATAAGATTT
66 AGGAAATAAGATTCGCTGCCTTCAGCTTT-A---G-TCTACTGCAACGCCAAGGAAATAAGATTC
** *
1020827 ATTGCCTTCAGCTTTAATATGTT
126 GCTGCCTTCAGCTTTAATCTGTT
* * * * * * *
1020850 CCACTGTAA--CTAAGGAAATAAGATTCACTGCCTTAAGGTTTAATC---TACTCTG--ACGCC-
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * * *
1020907 AGCGAAATAAGATTTGCTGCCTTCAACTTTAATCAGTTCAACTGCAACGCCAAGGAAAT-GGATT
66 AG-GAAATAAGATTCGCTGCCTTCAGC-TT--T-AG-TCTACTGCAACGCCAAGGAAATAAGATT
** * * *
1020971 TTCTACCTTTAGCTTTCATC---T
125 CGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
1020992 --AATGCGATGCCAAGGAAATAAGATTTGCTGCCTTCAGCTTTAATTTGTTCCACTGCAATGCCA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * * * * * *
1021055 AGGAAAT-GGAATTCGTTGCTTTCAGCTTTAATCTGTTCCACTGCAAC-ACAGGGGAAATAAGAG
66 AGGAAATAAG-ATTCGCTGCCTTCAGCTTT-A---G-TCTACTGCAACGCCA-AGGAAATAAGAT
* * * *
1021118 CCGTTGGCTTTAGCTTT-A---G-T
124 TCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * * * ** *
1021138 CTACTACGACGTCAGGGAAATAAGATTTGTTGCCTTCTGCTTTACTCTGTTATACTGCAACGGCA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* *
1021203 GGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCTACTGAAACGCCAAGGAAATAAGATTC
66 AGGAAATAAGATTCGCTGCCTTCAGCTTT-A---G-TCTACTGCAACGCCAAGGAAATAAGATTC
* * * *
1021268 ACCGCCTTTACCTTT-A---G-T
126 GCTGCCTTCAGCTTTAATCTGTT
* * *** * * *
1021286 CTATTGCGGTGCCAGGGAAATAAGATTC-CTTGCCTTCAGCTTTAATCTGTTCCACTACAACGGC
1 CCACTGCAACGCCAAGGAAATAAGATTCGC-TGCCTTCAGCTTTAATCTGTTCCACTGCAACGCC
* * * * *
1021350 AAGGAGATGAGATTCGCTGCCTTCAGCTTTAACCTGTTCCACTGCAATGCTAAGGAAATAAGATT
65 AAGGAAATAAGATTCGCTGCCTTCAGCTTT-A---G-TCTACTGCAACGCCAAGGAAATAAGATT
* *
1021415 TGCTACCTTCAGCTTTAA--T-TT
125 CGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
1021436 --ACTACGACGACATGGAAATAA-AGTTCGCTACCTTCAGTTTTAATCTGTTCCACTGCAACGCC
1 CCACTGCAACGCCAAGGAAATAAGA-TTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCC
** ** *
1021498 AAGGAAATAAGATTTACTGCCTTCAATTTTAATATGTTCCACTGCAACGCCAAGGAAATAAGATT
65 AAGGAAATAAGATTCGCTGCCTTC-AGCTT--TA-G-TCTACTGCAACGCCAAGGAAATAAGATT
** ** *
1021563 TACTGCCTTCAATTTTAATATGTT
125 CGCTGCCTTCAGCTTTAATCTGTT
* * * *
1021587 CCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTCAACTTT-AGC--TT--ACTGCGACGCCA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * * * * * * *
1021647 GGGATATAAGATTCACTGCCTTTAG-TGTTAATCTGTTCCACTGCAATGCCAAGAAAATGAGATT
66 AGGAAATAAGATTCGCTGCCTTCAGCT-TT-A---G-TCTACTGCAACGCCAAGGAAATAAGATT
*
1021711 CGCTGCATTCAGCTTTAA-C----
125 CGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * * * **
1021730 CTACTGCGATGCCAGGGAAATAAGATTCACTGGCTTCAGGTCTAATCTGTTCTACTGCAACGCTT
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * * * * **** * *
1021795 AGGAAATAAGATTCGATGCCTTCAGCTTTAATCTATTACGACGTTGGGGAAATGAGGTTCGCTGC
66 AGGAAATAAGATTCGCTGCCTTCAGCTTTAGTCTACTGCAACGCCAAGGAAATAAGATTCGCTGC
*
1021860 CTTCAGCTTTAATTTGTT
131 CTTCAGCTTTAATCTGTT
* ** * * * *
1021878 CAACTGTGATGCCAAAGG-AATAAGATTCACTTCCTTCAGCTTTAATC---T--ACTGCAACACC
1 CCACTGCAACGCC-AAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCC
* ** ** * * *
1021937 AGGGAAATGTGATTCGCTGCCTTCAAG-TTTAACCTACTACGACTCC-AGGTAAATAAGATTCGC
65 AAGGAAATAAGATTCGCTGCCTTC-AGCTTTAGTCTACTGCAACGCCAAGG-AAATAAGATTCGC
*
1022000 TGCCTTTAGCTTTAATCTGTT
128 TGCCTTCAGCTTTAATCTGTT
* * * * * *
1022021 CCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATC---T--ACTACGATGCCA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* ** * * * * * * *
1022081 GGGAAATAAGATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAAAAAGATTT
66 AGGAAATAAGATTCGCTGCCTTCAGCTTT-A---G-TCTACTGCAACGCCAAGGAAATAAGATTC
1022146 GCTGCCTTCAGCTTTAATCTG--
126 GCTGCCTTCAGCTTTAATCTGTT
** * * * ** * * *
1022167 ---CTGTGATGCTAGGGAAATAAGATTTACTACCTTCAGCTTTAATCTGTTCCACTACAAC-ACA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * * * * * * * *
1022228 ATCGAAATAAGATTCACTGCCTTCAGTTTTAATCTACTACGATGCCAGGGAAATAAGATTCACTG
66 A-GGAAATAAGATTCGCTGCCTTCAGCTTTAGTCTACTGCAACGCCAAGGAAATAAGATTCGCTG
*
1022293 CCTTCAGTTTTAATC---T
130 CCTTCAGCTTTAATCTGTT
* * * * * **
1022309 --ACTACGATGCCAGGGAAATAAGATTCACTG-CTTCAGCTTTAATCTGTTCCACTGCAACGAAA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * * * * * * * *
1022371 AAGAAATAAGATTCGC-GACCTTCAGGTTTAATCTACAGCGACGCCAGGGAAATAAAATCCACTG
66 AGGAAATAAGATTCGCTG-CCTTCAGCTTTAGTCTACTGCAACGCCAAGGAAATAAGATTCGCTG
*
1022435 GCTTCAGCTTTAATCTGTT
130 CCTTCAGCTTTAATCTGTT
** * * * * *
1022454 CCACTGCAACGCTGAGGGAATAAGACTCG-TGTCCTTCTGATTTAATC---T--ACTGCCACGCC
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTG-CCTTCAGCTTTAATCTGTTCCACTGCAACGCC
* * * *
1022513 AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAATGCCAAAGAAATGAGAT
65 AAGGAAATAAGATTCGCTGCCTTCAGCTTTAGTCTACTGCAACGCCAA-G-----GAAATAAGAT
*
1022578 TCACTGCCTTCAGCTTTAA--T-TT
124 TCGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
1022600 --ACTACAACGGCAGGGAAATAAGATTTGCTGCCTTTAGCTTTAATC---T--ACTGCGACGCCA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * * * * *
1022658 GGGAAATAAGATTCGTTGCCTTGAGATTTAATCTGTTCCACTGCAACGCCAAAGAAATAAGATTC
66 AGGAAATAAGATTCGCTGCCTTCAGCTTT-A---G-TCTACTGCAACGCCAAGGAAATAAGATTC
* *
1022723 GCTTCCTTCTGCTTTAATC---T
126 GCTGCCTTCAGCTTTAATCTGTT
* * * * * * *
1022743 --ACTTCGAC-CCCAGGAAATAAGATTCGTTACCTTCAACTTTAATCTGTTCCACTACAACGCCA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
* * * * * * ** *
1022805 AGGAAATGAGA-T---T-CATTCAGCTTTAATCTACTGTGACCCCCTGGGAAATAAGATTCGCTA
66 AGGAAATAAGATTCGCTGCCTTCAGCTTTAGTCTACTG-CAACGCCAAGGAAATAAGATTCGCTG
1022865 CCTTCAGCTTTAATCTGTT
130 CCTTCAGCTTTAATCTGTT
* * *
1022884 CCACTACAACGCCAAGGAAATGAGATTCACTGCCTTCAGCTTTAA
1 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAA
1022929 CCTACTGCGA
Statistics
Matches: 5402, Mismatches: 1252, Indels: 757
0.73 0.17 0.10
Matches are distributed among these distances:
136 67 0.01
137 6 0.00
138 35 0.01
139 6 0.00
140 51 0.01
141 83 0.02
142 339 0.06
143 1559 0.29
144 136 0.03
145 62 0.01
146 121 0.02
147 270 0.05
148 2499 0.46
149 83 0.02
150 7 0.00
151 8 0.00
152 5 0.00
153 63 0.01
154 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (148 bp):
CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCA
AGGAAATAAGATTCGCTGCCTTCAGCTTTAGTCTACTGCAACGCCAAGGAAATAAGATTCGCTGC
CTTCAGCTTTAATCTGTT
Found at i:1018007 original size:44 final size:44
Alignment explanation
Indices: 1017898--1018047 Score: 124
Period size: 46 Copynumber: 3.3 Consensus size: 44
1017888 CTTCAACGAC
* * *
1017898 AAGGAAATGAGATTTGTTCCCTTCAGCTTTAATCTACTACGACGCT
1 AAGGAAATGAGA-TTGCTGCCTTCAGCTTT-ATCCACTACGACGCT
* * * *
1017944 -AGAGAAATAAGATGTGCTGCCTTCTGCTTT-TCCACTCCTACGCT
1 AAG-GAAATGAGAT-TGCTGCCTTCAGCTTTATCCACTACGACGCT
* * * *
1017988 AAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTAATACGATGCC
1 AAGGAAATGAGATT-GCTGCCTTCAGCTTT-ATCCACTACGACGCT
*
1018034 AAGGAAATAAGATT
1 AAGGAAATGAGATT
1018048 TACTTCTTTC
Statistics
Matches: 82, Mismatches: 16, Indels: 12
0.75 0.15 0.11
Matches are distributed among these distances:
43 1 0.01
44 34 0.41
45 5 0.06
46 42 0.51
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (44 bp):
AAGGAAATGAGATTGCTGCCTTCAGCTTTATCCACTACGACGCT
Found at i:1018063 original size:90 final size:90
Alignment explanation
Indices: 1017898--1018063 Score: 217
Period size: 90 Copynumber: 1.8 Consensus size: 90
1017888 CTTCAACGAC
* * * * *
1017898 AAGGAAATGAGATTTGTTCCCTTCAGCTTTAATCTACTACGACGCTAGAGAAATAAGATGTGCTG
1 AAGGAAATGAGATTCGCTCCCTTCAGCTTTAATCTAATACGACGCAAGAGAAATAAGATGTACTG
*
1017963 CCTTCTGCTTTTCCACTCCTACGCT
66 CCTTCAGCTTTTCCACTCCTACGCT
* * *
1017988 AAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTAATACGATGCCAAG-GAAATAAGATTTACT
1 AAGGAAATGAGATTCGCTCCCTTCAGCTTTAATCTAATACGACG-CAAGAGAAATAAGATGTACT
* *
1018052 TCTTTCAGCTTT
65 GCCTTCAGCTTT
1018064 AATTTGTTCC
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
90 61 0.95
91 3 0.05
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (90 bp):
AAGGAAATGAGATTCGCTCCCTTCAGCTTTAATCTAATACGACGCAAGAGAAATAAGATGTACTG
CCTTCAGCTTTTCCACTCCTACGCT
Found at i:1022087 original size:240 final size:238
Alignment explanation
Indices: 1015910--1023053 Score: 1512
Period size: 245 Copynumber: 29.5 Consensus size: 238
1015900 ACGATGTAAG
* * *
1015910 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAACATTCG
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTT-CACTGCAACGCTAAGGAAATAAGATTCA
* * * * * *
1015975 CCGCCTTCAGCTTTAGTCTACTGCAATGCTAGGGAAATAAGATTCGCTGCCTTCAG-TGTTAATC
65 CTGCCTTCAGCTTTAATCTACTACGATGCCAGGGAAATAAGATTCACTGCCTTCAGCT-TTAATC
** * * * * *
1016039 TGTTCCACTGCAATGCC-AAGGAAATGTGATTCGCTGCCTTTAGTTTTAATCTACTACGACGGCA
129 TGTTCCACTGCAATGCCAAAGG-AATAAGATTCGCTACCTTCAGCTTTAATCTACTGCGACGCCA
* * * * * * * * * * **
1016103 GAGAAATAATATTTGTTGGCTTCAGCTTTAATTTGTTCTACTGCAAAATTAA
193 GGGAAATGAGATTCGCTGCCTTCAGCTTTAA-----CCTACTAC-GACTCCA
* ** * * * * *
1016155 GAAAATAAGATTCGTTTCCTTTAGCTTTAATC---T-ACTGCGACG-TCAATGAAATAAGATTCG
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCACTGCAACGCT-AAGGAAATAAGATTCA
* * ** *
1016215 CTTCCTTCAGCTTTAATCTGTTCCACTACAATGCCAAAGAAATGAGATTCACTGCCTTCAGCTTT
65 CTGCCTTCAGCTTTAATC---T--ACTACGATGCCAGGGAAATAAGATTCACTGCCTTCAGCTTT
* * * * ** * *
1016280 AATC---T--ACTGTGAA-GCCAGAGAAATAAGATTCACCGCTTTCAACTTTAATCTACTGCGAC
125 AATCTGTTCCACTG-CAATGCCAAAGGAATAAGATTCGCTACCTTCAGCTTTAATCTACTGCGAC
* * * * * * * *
1016339 GCCAGGTAAATAAGATTCGCTTCCTTTAGCTTTAATCTGTTCCACTGGAACGCCAA
189 GCCAGGGAAATGAGATTCGCTGCCTTCAGCTTTAA-C-CTACTAC--G-ACTCC-A
* * * ** *
1016395 GAAAATGAGATTCGCTGCCTTCAGCTTTAATC---T-ACTGTGACG-TCAGGAAAATAAGATT-A
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCACTGCAACGCTAAGG-AAATAAGATTCA
* * * * * * * * **
1016454 CTTCCTTCAGCTTTAATATGTTCCAATGCAACGCCAGGGAAATGAGATTCGA-TGCCTTTAAATT
65 CTGCCTTCAGCTTT-A-A---TCTACTACGATGCCAGGGAAATAAGATTC-ACTGCCTTCAGCTT
* * * * * *
1016518 TAATCTAG----A--GCGACG-CTAAGGAAAAAAGATTTGCTGCCTTCAGCTTTAATTTCTTCCA
124 TAATCT-GTTCCACTGCAATGCCAAAGG-AATAAGATTCGCTACCTTCAGCTTTAA--TC-T--A
* * * * * * * * * *
1016576 CTGCAATGCAATGGAAATGAGATTCGCTGCCTTTAGCTTTAATCTACTGCAACACTA
182 CTGCGACGCCAGGGAAATGAGATTCGCTGCCTTCAGCTTTAACCTACTACGACTCCA
* * * * ** *
1016633 GGGAAATAAAATTCGCTACCTTCAACTTTAATCTGTTCCACTGCAACGGAAATGAAATAAGATTC
1 -GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTT-CACTGCAACGCTAAGGAAATAAGATTC
* * *
1016698 ACTGCCTTCAGCTTTAATCTACTGCGATGCCAGGGAAATAAGATTCGCTGCCTTCAACTTTAATC
64 ACTGCCTTCAGCTTTAATCTACTACGATGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTAATC
* * * * * * * *
1016763 TATTCCACTACAACGCC-AAGGAAATGAGATTTGCTACGTGCAGCTTTAATCTACTGCGATGCCA
129 TGTTCCACTGCAATGCCAAAGG-AATAAGATTCGCTACCTTCAGCTTTAATCTACTGCGACGCCA
* * ** * * ** * * *
1016827 GGGAAATAAAATTTACTGCCTTTAACTTTAATTTGTTCCACTGTAATGCCA
193 GGGAAATGAGATTCGCTGCCTTCAGCTTTAA--CCTACTAC-G-ACT-CCA
* ** * * * *
1016878 GGGAAATGAGATTTGCTGCCTTTAGCTTTAATC---T-AATGCGACGCT-AGAGAAATAAGATTT
1 -GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCACTGCAACGCTAAG-GAAATAAGATTC
* * * * * * * ** * *
1016938 GCTGCCTCCTA-CTTTAATCTGTTCCACTGCAATGCTAAGGAAATGAGATTTGCTACCTTTAGCT
64 ACTGCCTTC-AGCTTTAATC---T--ACTACGATGCCAGGGAAATAAGATTCACTGCCTTCAGCT
* ** ** * * * * *
1017002 TTAATC---T--AATGTGATG-TTAAGGAAATAAGATTTGTTGCCCTCAGCTTTAATTTGTTCCA
123 TTAATCTGTTCCACTGCAATGCCAAAGG-AATAAGATTCGCTACCTTCAGCTTTAA-----TCTA
* * * * * * * * *
1017061 CTACAACGCCAAGGAAA-GAAGATTCGCTGTCATCAGCTTTAATCTGTTCCACTGCAATGCCA
182 CTGCGACGCCAGGGAAATG-AGATTCGCTGCCTTCAGCTTTAA-C-CTACTAC-G-ACT-CCA
* * * * * *
1017123 GGGAAATAAGATTTACTGGCTTTATCTTTAATC---T-ACTGCGACGC-CAGAGAAATAA-AGTT
1 -GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCACTGCAACGCTAAG-GAAATAAGA-TT
** * * ** * * * * **
1017182 TGCTGCCTTCAGTTTTAATCTGTTCCGCTGTAATACCAAGGAGATGAGATTCGTTGCCTTCAGCT
63 CACTGCCTTCAGCTTTAATC--TACTAC-G--ATGCCAGGGAAATAAGATTCACTGCCTTCAGCT
* * * * * ** *
1017247 TTAATC---T--ACTGCGACG-CTAGGGAAATAATATTTACTGCCTTCAGCTTTAATCTGTTCCA
123 TTAATCTGTTCCACTGCAATGCCAAAGG-AATAAGATTCGCTACCTTCAGCTTTAATC---T--A
* * * * * * * * * * * * * *
1017306 CTACAATGCTAGGGAAATAAAATTTGTTGCCTCCTGCTTTAATCTACTGCGACGCTA
182 CTGCGACGCCAGGGAAATGAGATTCGCTGCCTTCAGCTTTAACCTACTACGACTCCA
*** * * * * * ** *
1017363 GGGAAATAAGATTTGTTACCGTCAGTTTTAATCTGTTCCACTGCGACTAC-AAAAAAATGAGATT
1 -GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTT-CACTGCAAC-GCTAAGGAAATAAGATT
* * * * * *
1017427 CTCTAG-CTTTAGCTTTAATATACTGCGACGCCAGGGAAATAAGATTCACTGCCTTCTGCTTTAA
63 CACT-GCCTTCAGCTTTAATCTACTACGATGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTAA
* * * * * *
1017491 TCTGTTCCACTACAACG-CTAAGGAAATAAGACTCGCTGCCTTCATCTTTAATCTACTGCGACGC
127 TCTGTTCCACTGCAATGCCAAAGG-AATAAGATTCGCTACCTTCAGCTTTAATCTACTGCGACGC
* * * * * *
1017555 CAGGGAAATAAGATTTGCTGCATTCAGCTTTAATCTATTCTACTGCAATGCAAA
191 CAGGGAAATGAGATTCGCTGCCTTCAGCTTTAACCTA--CTAC-G-ACT-C-CA
** * * * * * * **
1017609 TAAAATGAGATTCACTGCCTTCAACTTGAATCTG----CTGCGACGCCAGGGAAATAAGATTTGC
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCACTGCAACGCTAAGGAAATAAGATTCAC
* * * * * * *
1017670 TGCCTTTAACTTTAATCTGTTCCACTACAACGTCAAGGAAAAAAGATTCACTGCCTTCAGCTTTA
66 TGCCTTCAGCTTTAATC---T--ACTACGATGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTA
** * * *
1017735 A--T-TT--ACTGCGCTAG-CAGAGAAATAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTG
126 ATCTGTTCCACTGCAAT-GCCAAAGGAATAAGATTCGCTACCTTCAGCTTTAATC---T--ACTG
* * * * * * * *
1017794 CAACACTAAGGAAATGAGATTTGCTGCCTTCAGCTTTAATCTACTGCGA-TGCAA
185 CGACGCCAGGGAAATGAGATTCGCTGCCTTCAGCTTTAACCTACTACGACT-CCA
* * * * * *
1017848 GGGAAATAAGATTTATTGGCTTCAACTTTAATCTGTTCCACTTCAACGAC-AAGGAAATGAGATT
1 -GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTT-CACTGCAACG-CTAAGGAAATAAGATT
*** * * * * * *
1017912 TGTTCCCTTCAGCTTTAATCTACTACGACGCTAGAGAAATAAGATGT-GCTGCCTTCTGC-----
63 CACTGCCTTCAGCTTTAATCTACTACGATGCCAGGGAAATAAGAT-TCACTGCCTTCAGCTTTAA
* * * * * * * * *
1017971 T-T-TTCCACTCCTACG-CTAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTAATACGATGC
127 TCTGTTCCACTGCAATGCCAAAGG-AATAAGATTCGCTACCTTCAGCTTTAATCTACTGCGACGC
* * ** * * ** * * * *
1018033 CAAGGAAATAAGATTTACTTCTTTCAGCTTTAATTTGTTCCACTGTAATGTCAA
191 CAGGGAAATGAGATTCGCTGCCTTCAGCTTTAA--CCTACTAC-G--A-CTCCA
* * * * * *
1018087 GGAAATTA-ATTCGCTGTCATCAGCTTTAATCTGTTCTACTGCAATGCTAAGGAAATAAGATTCG
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTC-ACTGCAACGCTAAGGAAATAAGATTCA
* * * * * * * *** *
1018151 CTGGCTTTAGCTTTAGTCTATTGCGACGTCAGGGAAATAAGATTTGGTGCCTTCTGCTTTAATCT
65 CTGCCTTCAGCTTTAATCTACTACGATGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTAATCT
* * * * * * * *
1018216 GTTCTACTACAACT-CC-AAGGAAATAAAATTTGCTGCCTTCAACTTTAATCAACTGCGACGACA
130 GTTCCACTGCAA-TGCCAAAGG-AATAAGATTCGCTACCTTCAGCTTTAATCTACTGCGACGCCA
* * * * *
1018279 GGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACACCAA
193 GGGAAATGAGATTCGCTGCCTTCAGCTTTAA-C----CTACTACGACTCC-A
* * ** * * * * **
1018331 AGAAATGAGATTTGCTACCTTCAGCTTTAATC---T-AATGCGACGCCAAGGAAATAAGATTTGC
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCACTGCAACGCTAAGGAAATAAGATTCAC
* ** * * * * * * * **
1018392 TACCTTCAATTTTAATTTGATCCACTACAATGCCAAGAAAATGAGATTCGCTGCCGTCAGCTACA
66 TGCCTTCAGCTTT-A----ATCTACTACGATGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTA
* * * * * *
1018457 ATCTGTTCCACTGCAACGCCAACGAAATAAGATTCGCTACCTTCAGCTTGAATCTACTGCGATGA
126 ATCTGTTCCACTGCAATGCCAAAGGAATAAGATTCGCTACCTTCAGCTTTAATCTACTGCGACGC
* *
1018522 CAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCTACTAC-AATGCCAA
191 CAGGGAAATGAGATTCGCTGCCTTCAGCTTTAA-C----CTACTACGACT-CC-A
* * *
1018576 GGAAATAAGATTTATTGCCTTCAGCTTTAATATGTTCCACTGCAACGCTAAGGAAATAAGATTCA
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTT-CACTGCAACGCTAAGGAAATAAGATTCA
* * * * * ** *
1018641 CTGCCTTAAGGTTTAATCTACT-CTAACGCCAGCGAAATAAGATTTGCTGCCTTCAACTTTAATC
65 CTGCCTTCAGCTTTAATCTACTAC-GATGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTAATC
* * * * * * * *
1018705 AGTTCAACTGCAACGCC-AAGGAAATGAGAGTT-GCTGCCTTCAGCTTTCATCTAATGCGATGCC
129 TGTTCCACTGCAATGCCAAAGG-AATAAGA-TTCGCTACCTTCAGCTTTAATCTACTGCGACGCC
* * * ** * * *
1018768 AAGGAAATAAGATTTGCTGCCTTCAGCTTTAATTTGTTCCACTGCAATGCCAA
192 AGGGAAATGAGATTCGCTGCCTTCAGCTTTAA--CCTACTAC-G-ACT-CC-A
* * * * * *
1018821 GGAAAT-GGAATTCGCTGCTTTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGAGTC
1 GGAAATAAG-ATTCACTGCCTTCAGCTTTAATCTGTT-CACTGCAACGCTAAGGAAATAAGATTC
* * * * * * * *** *
1018885 ATTGGCTTTAGCTTTAGTCTACTGCGACGTCAGGGAAATAAGATTTGTTGCCTTCTA-CTTTACT
64 ACTGCCTTCAGCTTTAATCTACTACGATGCCAGGGAAATAAGATTCACTGCCTTC-AGCTTTAAT
* * * * * * **
1018949 TTGTTCTACTGCAACGGC-AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCTACTGAA
128 CTGTTCCACTGCAATGCCAAAGG-AATAAGATTCGCTACCTTCAGCTTTAA-----TCTACTGCG
* * * * * * * ** * * *
1019013 ACACCAAGGAAATAAGATTCACCGCCTTTACCTTTAGTCTATTGCG-GTGCCA
187 ACGCCAGGGAAATGAGATTCGCTGCCTTCAGCTTTAACCTACTACGACT-CCA
* * * * *
1019065 GGGAAATAAGATTC-CTTGCCTTCAGTTTTAATCTGTTCCACTACAAAGGC-AAGGAGATGAGAT
1 -GGAAATAAGATTCAC-TGCCTTCAGCTTTAATCTGTT-CACTGC-AACGCTAAGGAAATAAGAT
* * * * * * ** *
1019128 TCGCTGCCTTCAGCTTTAACCTGTTCCACTGCAATGCTAAGGAAATAAGATTTGCTACCTTCAGC
62 TCACTGCCTTCAGCTTTAA-----TCTACTACGATGCCAGGGAAATAAGATTCACTGCCTTCAGC
* * * * * *
1019193 TTTAA--T-TT--ACTACGACGAC-ATGGAAATAA-AGTTCGCTACCTTCAGTTTTAATCTGTTC
122 TTTAATCTGTTCCACTGCAATGCCAAAGG-AATAAGA-TTCGCTACCTTCAGCTTTAATC---T-
* * * ** * * * *
1019251 CACTGCAACGCCAAGGAAATAAGATTTACTGCCTTCAACTTTAATATGTTCC-ACTGCAACGCCA
181 -ACTGCGACGCCAGGGAAATGAGATTCGCTGCCTTCAGCTTT-A-A----CCTACTACGACTCC-
1019315 A
238 A
* * * * *
1019316 GGAAATAAGATTTACTGCCTTCAACTTTAATATGTTCCACTGCAACGCCAAGGAAATAAGATTCT
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTT-CACTGCAACGCTAAGGAAATAAGATTCA
* * * * * * * *
1019381 CTGCCTTAAACTTT-AGCTTACTGCGACGCCAGGGATATAAGATTCACTGCCTTTAGCGTTAATC
65 CTGCCTTCAGCTTTAATC-TACTACGATGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTAATC
* * * * * * *
1019445 TGTTTCACTGCAATGCC-AAGAAAATGAGATTCGCTGCATTCAACTTTAACCTACTGCGACGCCA
129 TGTTCCACTGCAATGCCAAAG-GAATAAGATTCGCTACCTTCAGCTTTAATCTACTGCGACGCCA
* * * * * * * * *
1019509 GGGAAATAAGATTCACTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTTA
193 GGGAAATGAGATTCGCTGCCTTCAGCTTTAA-C----CTACTACGACTC-CA
* * * * *
1019561 GGAAATAAGATTCGA-TGCCTTCAGCTTTAATCTATT-AC-G--ACGTTAGGGAAATGAGATTCG
1 GGAAATAAGATTC-ACTGCCTTCAGCTTTAATCTGTTCACTGCAACGCTAAGGAAATAAGATTCA
* ** * * *
1019621 CTGCCTTCAGCTTTAATTTGTTCCACTGTGATGCCAAAGG-AATAAGATTCGCTTCCTTCAGCTT
65 CTGCCTTCAGCTTTAA-----TCTACTACGATGCC-AGGGAAATAAGATTCACTGCCTTCAGCTT
** * * * * *
1019685 TAATC---T--ACTGCAACACC-AGGGAAATGAGATTTGCTGCCTTCAAG-TTTAATCTACTACG
124 TAATCTGTTCCACTGCAATGCCAAAGG-AATAAGATTCGCTACCTTC-AGCTTTAATCTACTGCG
* * * * * * * * *
1019743 ACTCCAGGTAAATAAGATTCGCTGCCTTTAGCTTTAATCTGTTCCACTGCAACGCTAA
187 ACGCCAGGGAAATGAGATTCGCTGCCTTCAGCTTTAA-C----CTACTACGACTC-CA
* * * * * * *
1019801 GGAAATAAGATTCACCGCCTTCAGCTTTAATC---T-ACTACGATGCCAGGGAAATAAGATTTAC
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCACTGCAACGCTAAGGAAATAAGATTCAC
* * * * * **
1019862 TACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAAAAAGATTTGCTGCCTTCAGCTTTA
66 TGCCTTCAGCTTTAATC---T--ACTACGATGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTA
** * * ** *
1019927 ATCTG-----CTGTGATG-CTAGGGAAATAAGATTTACTACCTTCAGCTTTAATCTGTTCCACTA
126 ATCTGTTCCACTGCAATGCCAAAGG-AATAAGATTCGCTACCTTCAGCTTTAATC---T--ACTG
* * * ** * * * * *
1019986 CAACACAATCGAAATAAGATTCACTGCCTTCAGTTTTAATCTACTACGACGCCAA
185 CGACGCCAGGGAAATGAGATTCGCTGCCTTCAGCTTTAACCTACTACGACTCC-A
* * * *
1020041 GGAAATAAGATTCACTGCCTTCAGTTTTAATC---T-ACTACGACGCCAAGGAAATAAGATTCAC
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCACTGCAACGCTAAGGAAATAAGATTCAC
* * * * *** *
1020102 T-ACTTCAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAATGAGATTTGTTGCCTTCAGTTTTA
66 TGCCTTCAGCTTTAATC---T--ACTACGATGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTA
* * * * * * * * * * *
1020166 ATC---T--ACTACTACGCTAGAGAAATAAGATTTGCTGCCTTCTA-CTTT--TCCACTACTACG
126 ATCTGTTCCACTGCAATGCCAAAGGAATAAGATTCGCTACCTTC-AGCTTTAATCTACTGCGACG
* * * *
1020223 CCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTAATACGACGCCAA
190 CCAGGGAAATGAGATTCGCTGCCTTCAGCTTTAACCTACTACGACTCC-A
** * * * * * * *
1020273 GGAAATAAGATTTGCTTCTTTCAGCTTTAATTTGTTCCACTGTAATGCAAAGGAAATGTA-ATTC
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTT-CACTGCAACGCTAAGGAAAT-AAGATTC
* * * *** * ** * *
1020337 GCTGTCGTT-AGCTTTAATCTGTTCTACTGCAATATTAAGGAAATAAGATTTTCTGGCTTTAGCT
64 ACTG-CCTTCAGCTTTAATC--TACTAC-G--ATGCCAGGGAAATAAGATTCACTGCCTTCAGCT
* * * * * * * * *
1020401 TCAGTCTATTGCGAC-G---T--C-AGGGAAATAAGATTTGGTGCCTTCTGCTTTAATCTGTTAT
123 TTAATCTGTT-CCACTGCAATGCCAAAGG-AATAAGATTCGCTACCTTCAGCTTTAATC-----T
* * * * * * * * * * ** **
1020459 ACTACAACTCCAAGGAAATAAAATTTGCTGCCTTCAACTTTAATCAACTGTGACGACA
181 ACTGCGACGCCAGGGAAATGAGATTCGCTGCCTTCAGCTTTAACCTACTACGACTCCA
* * * * * *
1020517 GGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACACCAAAGAAATGAGATTT
1 -GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTT-CACTGCAACGCTAAGGAAATAAGATTC
* * * * * ** * *
1020582 GCTACCTTCAGCTTTAATCTAATGCGATGCCAAGGAAATAAGATTTGCTACCTTCA-ATTGTAAT
64 ACTGCCTTCAGCTTTAATCTACTACGATGCCAGGGAAATAAGATTCACTGCCTTCAGCTT-TAAT
* * * ** * * * * *
1020646 TTGATCCACTGCAATGCC-AAGAAAATGGGATTCGCTGCCATCAGCTATAATCTGTTCCACTACA
128 CTGTTCCACTGCAATGCCAAAG-GAATAAGATTCGCTACCTTCAGCTTTAATC---T--ACTGCG
** * * * * ** *
1020710 ACGCCAACGAAATAAGATTCGCTACCTTCAGCTTGAATCTACTGTGA-TGACAA
187 ACGCCAGGGAAATGAGATTCGCTGCCTTCAGCTTTAACCTACTACGACT--CCA
* * * * *
1020763 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAGGAAATAAGATTTA
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTC-ACTGCAACGCTAAGGAAATAAGATTCA
* * * * * * * * *
1020828 TTGCCTTCAGCTTTAATATGTTCCACTG-TAACTAAGGAAATAAGATTCACTGCCTTAAGGTTTA
65 CTGCCTTCAGCTTT-A-ATCTACTAC-GAT-GCCAGGGAAATAAGATTCACTGCCTTCAGCTTTA
* * * ** * * * *
1020892 ATC---TACTCTG--ACGCCAGCGAAATAAGATTTGCTGCCTTCAACTTTAATCAGTTCAACTGC
126 ATCTGTTCCACTGCAATGCCAAAGGAATAAGATTCGCTACCTTCAGCTTTAATC---T--ACTGC
* * ** * * * * * *
1020952 AACGCCAAGGAAATG-GATTTTCTACCTTTAGCTTTCATCTAATGCGA-TGCCAA
186 GACGCCAGGGAAATGAGATTCGCTGCCTTCAGCTTTAACCTACTACGACT-CC-A
** * * * *
1021005 GGAAATAAGATTTGCTGCCTTCAGCTTTAATTTGTTCCACTGCAATGCCAAGGAAAT-GGAATTC
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTT-CACTGCAACGCTAAGGAAATAAG-ATTC
** * * * * ** ** * *
1021069 GTTGCTTTCAGCTTTAATCTGTTCCACTGCA-ACACAGGGGAAATAAGAGCCGTTGGCTTTAGCT
64 ACTGCCTTCAGCTTTAATC--TACTAC-G-ATGC-CA-GGGAAATAAGATTCACTGCCTTCAGCT
* * * * * * * * * * *
1021133 TT-A---G-TCTACTACGACGTC-AGGGAAATAAGATTTGTTGCCTTCTGCTTTACTCTGTTATA
123 TTAATCTGTTCCACTGCAATGCCAAAGG-AATAAGATTCGCTACCTTCAGCTTTAATC-----TA
* * * * * *
1021192 CTGCAACGGCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCTACTGAAACGCCAA
182 CTGCGACGCCAGGGAAATGAGATTCGCTGCCTTCAGCTTTAA-C-CTACTAC-G--ACTCC-A
* * * * * ** *
1021255 GGAAATAAGATTCACCGCCTTTACCTTTAGTCTATTGCGGTG---C-C-AGGGAAATAAGATTC-
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTT-CACTGCAACGCTAAGGAAATAAGATTCA
* * * * * * *
1021314 CTTGCCTTCAGCTTTAATCTGTTCCACTACAACGGCAAGGAGATGAGATTCGCTGCCTTCAGCTT
65 C-TGCCTTCAGCTTTAATC---T--ACTACGATGCCAGGGAAATAAGATTCACTGCCTTCAGCTT
* * * * *
1021379 TAACCTGTTCCACTGCAATG-CTAAGGAAATAAGATTTGCTACCTTCAGCTTTAATTTACTACGA
124 TAATCTGTTCCACTGCAATGCCAAAGG-AATAAGATTCGCTACCTTCAGCTTTAATCTACTGCGA
* * * * * * * * *
1021443 CGACATGGAAAT-AAAGTTCGCTACCTTCAGTTTTAATCTGTTCCACTGCAACGCCAA
188 CGCCAGGGAAATGAGA-TTCGCTGCCTTCAGCTTTAA-C----CTACTACGACTCC-A
* ** * * *
1021500 GGAAATAAGATTTACTGCCTTCAATTTTAATATGTTCCACTGCAACGCCAAGGAAATAAGATTTA
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTT-CACTGCAACGCTAAGGAAATAAGATTCA
** * * * * * * *
1021565 CTGCCTTCAATTTTAATATGTTCCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTCAACTTT
65 CTGCCTTCAGCTTT-A-A---TCTACTACGATGCCAGGGAAATAAGATTCACTGCCTTCAGCTTT
* * * * * * *
1021630 -AGC--TT--ACTGCGACGCC-AGGGATATAAGATTCACTGCCTTTAG-TGTTAATCTGTTCCAC
125 AATCTGTTCCACTGCAATGCCAAAGGA-ATAAGATTCGCTACCTTCAGCT-TTAATC---T--AC
* * * * * *
1021688 TGCAATGCCAAGAAAATGAGATTCGCTGCATTCAGCTTTAACCTACTGCGA-TGCCA
183 TGCGACGCCAGGGAAATGAGATTCGCTGCCTTCAGCTTTAACCTACTACGACT-CCA
* * * *
1021744 GGGAAATAAGATTCACTGGCTTCAGGTCTAATCTGTTCTACTGCAACGCTTAGGAAATAAGATTC
1 -GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTC-ACTGCAACGCTAAGGAAATAAGATTC
* * *** * * *
1021809 GA-TGCCTTCAGCTTTAATCTATTACGACGTTGGGGAAATGAGGTTCGCTGCCTTCAGCTTTAAT
64 -ACTGCCTTCAGCTTTAATCTACTACGATGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTAAT
* * ** * * * *
1021873 TTGTTCAACTGTGATGCCAAAGGAATAAGATTCACTTCCTTCAGCTTTAATCTACTGCAACACCA
128 CTGTTCCACTGCAATGCCAAAGGAATAAGATTCGCTACCTTCAGCTTTAATCTACTGCGACGCCA
*
1021938 GGGAAATGTGATTCGCTGCCTTCAAG-TTTAACCTACTACGACTCCA
193 GGGAAATGAGATTCGCTGCCTTC-AGCTTTAACCTACTACGACTCCA
* *
1021984 GGTAAATAAGATTCGCTGCCTTTAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTC
1 GG-AAATAAGATTCACTGCCTTCAGCTTTAATCTGTT-CACTGCAACGCTAAGGAAATAAGATTC
* * * *
1022049 ACCGCCTTCAGCTTTAATCTACTACGATGCCAGGGAAATAAGATTTACTACATTCAGCTTTAATC
64 ACTGCCTTCAGCTTTAATCTACTACGATGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTAATC
* * * * * * * *
1022114 TGTTCCACTGCAATGCC-AGGGAAAAAAGATTTGCTGCCTTCAGCTTTAATCTGCTGTGATGCTA
129 TGTTCCACTGCAATGCCAAAGG-AATAAGATTCGCTACCTTCAGCTTTAATCTACTGCGACGCCA
* ** * * * * *
1022178 GGGAAATAAGATTTACTACCTTCAGCTTTAATCTGTTCCACTACAACACAA
193 GGGAAATGAGATTCGCTGCCTTCAGCTTTAA-C----CTACTACGACTCCA
* * * * * * *
1022229 TCGAAATAAGATTCACTGCCTTCAGTTTTAATC---T-ACTACGATGCCAGGGAAATAAGATTCA
1 -GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCACTGCAACGCTAAGGAAATAAGATTCA
*
1022290 CTGCCTTCAGTTTTAATCTACTACGATGCCAGGGAAATAAGATTCACTG-CTTCAGCTTTAATCT
65 CTGCCTTCAGCTTTAATCTACTACGATGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTAATCT
* ** * * * *
1022354 GTTCCACTGCAACGAAAAAGAAATAAGATTCGCGACCTTCAGGTTTAATCTACAGCGACGCCAGG
130 GTTCCACTGCAATGCCAAAGGAATAAGATTCGCTACCTTCAGCTTTAATCTACTGCGACGCCAGG
* * * * * * * * * *
1022419 GAAATAAAATCCACTGGCTTCAGCTTTAATCTGTTCCACTGCAACGCTGA
195 GAAATGAGATTCGCTGCCTTCAGCTTTAA-C----CTACTACGACTC-CA
* * * * * * * * *
1022469 GGGAATAAGACTC-GTGTCCTTCTGATTTAATC---T-ACTGCCACGCCAGGGAAATAAGATTCG
1 GGAAATAAGATTCACTG-CCTTCAGCTTTAATCTGTTCACTGCAACGCTAAGGAAATAAGATTCA
** *
1022529 CTGCCTTCAGCTTTAATCTACTGCGACGCCAATGCCAAAGAAATGAGATTCACTGCCTTCAGCTT
65 CTGCCTTCAGCTTTAATCTACT---ACG---ATGCCAGGGAAATAAGATTCACTGCCTTCAGCTT
* * * * * * *
1022594 TAA--T-TT--ACTACAACGGC-AGGGAAATAAGATTTGCTGCCTTTAGCTTTAATCTACTGCGA
124 TAATCTGTTCCACTGCAATGCCAAAGG-AATAAGATTCGCTACCTTCAGCTTTAATCTACTGCGA
* * * * * * * *
1022653 CGCCAGGGAAATAAGATTCGTTGCCTTGAGATTTAATCTGTTCCACTGCAACGCCAA
188 CGCCAGGGAAATGAGATTCGCTGCCTTCAGCTTTAA-C----CTACTACGACTCC-A
* * * * * * ** **
1022710 AGAAATAAGATTCGCTTCCTTCTGCTTTAATC---T-ACTTCGAC-CCCAGGAAATAAGATTCGT
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCACTGCAACGCTAAGGAAATAAGATTCAC
* * * * * *
1022770 TACCTTCAACTTTAATCTGTTCCACTACAACGCCAAGGAAATGAGATTCA-----TTCAGCTTTA
66 TGCCTTCAGCTTTAATC---T--ACTACGATGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTA
** ** *** *
1022830 ATC---T--ACTGTGACCCCCTGGGAAATAAGATTCGCTACCTTCAGCTTTAATCTGTTCCACTA
126 ATCTGTTCCACTGCAATGCCAAAGG-AATAAGATTCGCTACCTTCAGCTTTAATC---T--ACTG
* * * * * *
1022890 CAACGCCAAGGAAATGAGATTCACTGCCTTCAGCTTTAACCTACTGCGACGCTA
185 CGACGCCAGGGAAATGAGATTCGCTGCCTTCAGCTTTAACCTACTACGACTCCA
* * * * * * * *
1022944 GGGAAATAAGATTTACTACCTTCAACTTGAATCTGTTCCACTACAACGCGAGGGAAATGAGATTC
1 -GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTT-CACTGCAACGCTAAGGAAATAAGATTC
* * * * * *
1023009 GCTGCCTTTAGCTTTAATCTACTGCGACGCTAGGAAAATAAGATT
64 ACTGCCTTCAGCTTTAATCTACTACGATGCCAGGGAAATAAGATT
1023054 TGTTGTCTTC
Statistics
Matches: 5239, Mismatches: 1247, Indels: 835
0.72 0.17 0.11
Matches are distributed among these distances:
232 76 0.01
233 33 0.01
234 19 0.00
235 76 0.01
236 27 0.01
237 120 0.02
238 108 0.02
239 409 0.08
240 1280 0.24
241 175 0.03
242 152 0.03
243 95 0.02
244 239 0.05
245 1927 0.37
246 56 0.01
247 17 0.00
248 44 0.01
249 15 0.00
250 360 0.07
251 8 0.00
252 1 0.00
255 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (238 bp):
GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCACTGCAACGCTAAGGAAATAAGATTCAC
TGCCTTCAGCTTTAATCTACTACGATGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTAATCTG
TTCCACTGCAATGCCAAAGGAATAAGATTCGCTACCTTCAGCTTTAATCTACTGCGACGCCAGGG
AAATGAGATTCGCTGCCTTCAGCTTTAACCTACTACGACTCCA
Found at i:1022739 original size:97 final size:97
Alignment explanation
Indices: 1016157--1023121 Score: 3323
Period size: 97 Copynumber: 71.9 Consensus size: 97
1016147 AAAATTAAGA
* * * * * *
1016157 AAATAAGATTCGTTTCCTTTAGCTTTAATC---T--ACTGCGACGTCAATGAAATAAGATTCGCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * * **
1016217 TCCTTCAGCTTTAATCTGTTCCACTACAATGCCAAAG
66 GCCTTCAGCTTTAATC---T--ACTGCGACGCCAGGG
* * * *
1016254 AAATGAGATTCACTGCCTTCAGCTTTAATC---T--ACTGTGAA-GCC-AGAGAAATAAGATTCA
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTG-CAACGCCAAG-GAAATAAGATTCG
* * * *
1016312 CCGCTTTCAACTTTAATCTACTGCGACGCCAGGT
64 CTGCCTTCAGCTTTAATCTACTGCGACGCCAGGG
* * * * *
1016346 AAATAAGATTCGCTTCCTTTAGCTTTAATCTGTTCCACTGGAACGCCAAGAAAATGAGATTCGCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * *
1016411 GCCTTCAGCTTTAATCTACTGTGACGTCAGGA
66 GCCTTCAGCTTTAATCTACTGCGACGCCAGGG
* * * * * * *
1016443 AAATAAGATT-ACTTCCTTCAGCTTTAATATGTTCCAATGCAACGCCAGGGAAATGAGATTCGAT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* ** ** * *
1016507 GCCTTTAAATTTAATCTAGAGCGACGCTAAGG
66 GCCTTCAGCTTTAATCTACTGCGACGCCAGGG
* * * * * *
1016539 AAAAAAGATTTGCTGCCTTCAGCTTTAATTTCTTCCACTGCAATG-CAATGGAAATGAGATTCGC
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATAAGATTCGC
* * * *
1016603 TGCCTTTAGCTTTAATCTACTGCAACACTAGGG
65 TGCCTTCAGCTTTAATCTACTGCGACGCCAGGG
* * * ** * *
1016636 AAATAAAATTCGCTACCTTCAACTTTAATCTGTTCCACTGCAACGGAAATGAAATAAGATTCACT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
*
1016701 GCCTTCAGCTTTAATCTACTGCGATGCCAGGG
66 GCCTTCAGCTTTAATCTACTGCGACGCCAGGG
* * * * *
1016733 AAATAAGATTCGCTGCCTTCAACTTTAATCTATTCCACTACAACGCCAAGGAAATGAGATTTGCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * *
1016798 ACGTGCAGCTTTAATCTACTGCGATGCCAGGG
66 GCCTTCAGCTTTAATCTACTGCGACGCCAGGG
* ** * * * * * * * *
1016830 AAATAAAATTTACTGCCTTTAACTTTAATTTGTTCCACTGTAATGCCAGGGAAATGAGATTTGCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * *
1016895 GCCTTTAGCTTTAATCTAATGCGACGCTAGAG
66 GCCTTCAGCTTTAATCTACTGCGACGCCAGGG
* * * * * *
1016927 AAATAAGATTTGCTGCCTCCTA-CTTTAATCTGTTCCACTGCAATGCTAAGGAAATGAGATTTGC
1 AAATAAGATTCGCTGCCTTC-AGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGC
* * * * * ** *
1016991 TACCTTTAGCTTTAATCTAATGTGATGTTAAGG
65 TGCCTTCAGCTTTAATCTACTGCGACGCCAGGG
* * * * * *
1017024 AAATAAGATTTGTTGCCCTCAGCTTTAATTTGTTCCACTACAACGCCAAGGAAAGAAGATTCGCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * *
1017089 GTCATCAGCTTTAATCTGTTCCACTGCAATGCCAGGG
66 GCCTTCAGCTTTAATC---T--ACTGCGACGCCAGGG
** * * * * *
1017126 AAATAAGATTTACTGGCTTTATCTTTAATC---T--ACTGCGACGCC-AGAGAAATAA-AGTTTG
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAG-GAAATAAGA-TTCG
* * * ** *
1017184 CTGCCTTCAGTTTTAATCTGTTCCGCTGTAATACCAAGG
64 CTGCCTTCAGCTTTAATC--TACTGC-G--ACGCCAGGG
* * * * * * * **
1017223 AGATGAGATTCGTTGCCTTCAGCTTTAATC---T--ACTGCGACGCTAGGGAAATAATATTTACT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * *
1017283 GCCTTCAGCTTTAATCTGTTCCACTACAATGCTAGGG
66 GCCTTCAGCTTTAATC---T--ACTGCGACGCCAGGG
* * * * * * * * * *
1017320 AAATAAAATTTGTTGCCTCCTGCTTTAATC---T--ACTGCGACGCTAGGGAAATAAGATTTGTT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * ** ***
1017380 ACCGTCAGTTTTAATCTGTTCCACTGCGACTACAAAA
66 GCCTTCAGCTTTAATC---T--ACTGCGACGCCAGGG
* * * * * * *
1017417 AAATGAGATTCTCTAG-CTTTAGCTTTAA--T-AT--ACTGCGACGCCAGGGAAATAAGATTCAC
1 AAATAAGATTCGCT-GCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGC
* * * * *
1017476 TGCCTTCTGCTTTAATCTGTTCCACTACAACGCTAAGG
65 TGCCTTCAGCTTTAATC---T--ACTGCGACGCCAGGG
* * * * *
1017514 AAATAAGACTCGCTGCCTTCATCTTTAATC---T--ACTGCGACGCCAGGGAAATAAGATTTGCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * * * *
1017574 GCATTCAGCTTTAATCTA-TTCTACTGCAATGC
66 GCCTTCAGCTTTAATCTACTGCGAC-GCCAGGG
* * * * *
1017606 AAATAAAATGAGATTCACTGCCTTCAACTTGAATCTG-----CTGCGACGCCAGGGAAATAAGAT
1 AAAT---A--AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGAT
* * * * * * *
1017666 TTGCTGCCTTTAACTTTAATCTGTTCCACTACAACGTCAAGG
61 TCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCAGGG
* * * ** *
1017708 AAAAAAGATTCACTGCCTTCAGCTTTAAT-T-TACTGC-GCTA-G-C-AGAGAAATAAGATTCGC
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAG-GAAATAAGATTCGC
* * * * * *
1017767 TACCTTTAGCTTTAATCTGTTCCACTGCAACACTAAGG
65 TGCCTTCAGCTTTAATC---T--ACTGCGACGCCAGGG
* * * * ***
1017805 AAATGAGATTTGCTGCCTTCAGCTTTAATC---T--ACTGCGATG-CAAGGGAAATAAGATTTAT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATAAGATTCGC
* * * * * *
1017864 TGGCTTCAACTTTAATCTGTTCCACTTCAACGACAAGG
65 TGCCTTCAGCTTTAATC---T--ACTGCGACGCCAGGG
* * * * * * *
1017902 AAATGAGATTTGTTCCCTTCAGCTTTAATC---T--ACTACGACG-CTAGAGAAATAAGATGT-G
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAG-GAAATAAGAT-TCG
* * * * * *
1017960 CTGCCTTCTGCTTT--TCCACTCCTACGCTAAGG
64 CTGCCTTCAGCTTTAATCTACTGCGACGCCAGGG
* ** * **
1017992 AAATGAGATTCGCTGCCTTCAGCTTTAATCTAAT--AC-G--ATGCCAAGGAAATAAGATTTACT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * ** * * *
1018052 TCTTTCAGCTTTAATTTGTTCCACTGTAATGTCAAGG
66 GCCTTCAGCTTTAA-----TCTACTGCGACGCCAGGG
* * * * * *
1018089 AAATTA-ATTCGCTGTCATCAGCTTTAATCTGTTCTACTGCAATGCTAAGGAAATAAGATTCGCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * * *
1018153 GGCTTTAGCTTTAGTCTATTGCGACGTCAGGG
66 GCCTTCAGCTTTAATCTACTGCGACGCCAGGG
* * * * * * * *
1018185 AAATAAGATTTGGTGCCTTCTGCTTTAATCTGTTCTACTACAACTCCAAGGAAATAAAATTTGCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * *
1018250 GCCTTCAACTTTAATCAACTGCGACGACAGGG
66 GCCTTCAGCTTTAATCTACTGCGACGCCAGGG
* * * *
1018282 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACACCAAAGAAATGAGATTTGCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * *
1018347 ACCTTCAGCTTTAATCTAATGCGACGCCAAGG
66 GCCTTCAGCTTTAATCTACTGCGACGCCAGGG
* * ** * * * * * *
1018379 AAATAAGATTTGCTACCTTCAATTTTAATTTGATCCACTACAATGCCAAGAAAATGAGATTCGCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* ** * **
1018444 GCCGTCAGCTACAATCTGTTCCACTGCAACGCCAACG
66 GCCTTCAGCTTTAATC---T--ACTGCGACGCCAGGG
* * * * * *
1018481 AAATAAGATTCGCTACCTTCAGCTTGAATC---T--ACTGCGATGACAGGGAAATAAGATTCGCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * *
1018541 GCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAGG
66 GCCTTCAGCTTTAA-----TCTACTGCGACGCCAGGG
*** * * *
1018578 AAATAAGATTTATTGCCTTCAGCTTTAATATGTTCCACTGCAACGCTAAGGAAATAAGATTCACT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * *
1018643 GCCTTAAGGTTTAATCTACT-CTAACGCCAGCG
66 GCCTTCAGCTTTAATCTACTGC-GACGCCAGGG
* * * * *
1018675 AAATAAGATTTGCTGCCTTCAACTTTAATCAGTTCAACTGCAACGCCAAGGAAATGAGAGTT-GC
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGA-TTCGC
* * * *
1018739 TGCCTTCAGCTTTCATCTAATGCGATGCCAAGG
65 TGCCTTCAGCTTTAATCTACTGCGACGCCAGGG
* * * *
1018772 AAATAAGATTTGCTGCCTTCAGCTTTAATTTGTTCCACTGCAATGCCAAGGAAAT-GGAATTCGC
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAG-ATTCGC
* *
1018836 TGCTTTCAGCTTTAATCTGTTCCACTGCAACGCCAGGG
65 TGCCTTCAGCTTTAATC---T--ACTGCGACGCCAGGG
* ** * * * * * * * *
1018874 AAATAAGAGTCATTGGCTTTAGCTTT-A---G-TCTACTGCGACGTCAGGGAAATAAGATTTGTT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * *
1018934 GCCTTCTA-CTTTACTTTGTTCTACTGCAACGGCAGGG
66 GCCTTC-AGCTTTA-----ATCTACTGCGACGCCAGGG
* * * * *
1018971 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCTACTGAAACACCAAGGAAATAAGATTCACC
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * * **
1019036 GCCTTTACCTTTAGTCTATTGCGGTGCCAGGG
66 GCCTTCAGCTTTAATCTACTGCGACGCCAGGG
* * * * * *
1019068 AAATAAGATTC-CTTGCCTTCAGTTTTAATCTGTTCCACTACAAAGGCAAGGAGATGAGATTCGC
1 AAATAAGATTCGC-TGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGC
* * * * *
1019132 TGCCTTCAGCTTTAACCTGTTCCACTGCAATGCTAAGG
65 TGCCTTCAGCTTTAA-----TCTACTGCGACGCCAGGG
* * * * * *
1019170 AAATAAGATTTGCTACCTTCAGCTTTAA--T-TT--ACTACGACGACATGGAAATAA-AGTTCGC
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGA-TTCGC
* * * *
1019229 TACCTTCAGTTTTAATCTGTTCCACTGCAACGCCAAGG
65 TGCCTTCAGCTTTAATC---T--ACTGCGACGCCAGGG
** * * **
1019267 AAATAAGATTTACTGCCTTCAACTTTAATATGTTCCACTGCAACGCCAAGGAAATAAGATTTACT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * *
1019332 GCCTTCAACTTTAATATGTTCCACTGCAACGCCAAGG
66 GCCTTCAGCTTT-A-A---TCTACTGCGACGCCAGGG
* * * * * * * *
1019369 AAATAAGATTCTCTGCCTTAAACTTT-AGC--TT--ACTGCGACGCCAGGGATATAAGATTCACT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * * * *
1019429 GCCTTTAGCGTTAATCTGTTTCACTGCAATGCCAAGA
66 GCCTTCAGCTTTAATC----T-ACTGCGACGCCAGGG
* * * * * * *
1019466 AAATGAGATTCGCTGCATTCAACTTTAA-C----CTACTGCGACGCCAGGGAAATAAGATTCACT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * *
1019526 GGCTTCAGGTTTAATCTGTTCCACTGCAACGCTTA-GG
66 GCCTTCAGCTTTAATC---T--ACTGCGACGC-CAGGG
* * ** * *
1019563 AAATAAGATTCGATGCCTTCAGCTTTAATCTATT--AC-G--ACGTTAGGGAAATGAGATTCGCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * *
1019623 GCCTTCAGCTTTAATTTGTTCCACTGTGATGCCAAAGG
66 GCCTTCAGCTTTAA-----TCTACTGCGACGCC-AGGG
* * * * *
1019661 -AATAAGATTCGCTTCCTTCAGCTTTAATC---T--ACTGCAACACCAGGGAAATGAGATTTGCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * *
1019720 GCCTTCAAG-TTTAATCTACTACGACTCCAGGT
66 GCCTTC-AGCTTTAATCTACTGCGACGCCAGGG
* * * *
1019752 AAATAAGATTCGCTGCCTTTAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACC
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* *
1019817 GCCTTCAGCTTTAATCTACTACGATGCCAGGG
66 GCCTTCAGCTTTAATCTACTGCGACGCCAGGG
** * * * * * *
1019849 AAATAAGATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAAAAAGATTTGCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * *
1019914 GCCTTCAGCTTTAATCTGCTGTGATGCTAGGG
66 GCCTTCAGCTTTAATCTACTGCGACGCCAGGG
** * * * * *
1019946 AAATAAGATTTACTACCTTCAGCTTTAATCTGTTCCACTACAAC-ACAATCGAAATAAGATTCAC
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATAAGATTCGC
* * *
1020010 TGCCTTCAGTTTTAATCTACTACGACGCCAAGG
65 TGCCTTCAGCTTTAATCTACTGCGACGCCAGGG
* * * * *
1020043 AAATAAGATTCACTGCCTTCAGTTTTAATC---T--ACTACGACGCCAAGGAAATAAGATTCACT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * *
1020103 -ACTTCAGCTTTAATCTGTTCCACTGCAATGCCAGGG
66 GCCTTCAGCTTTAATC---T--ACTGCGACGCCAGGG
* * * * * * * *
1020139 AAATGAGATTTGTTGCCTTCAGTTTTAATC---T--ACTACTACG-CTAGAGAAATAAGATTTGC
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAG-GAAATAAGATTCGC
* * * *
1020198 TGCCTTCTA-CTTT--TCCACTACTACGCCAAGG
65 TGCCTTC-AGCTTTAATCTACTGCGACGCCAGGG
* ** *
1020229 AAATGAGATTCGCTGCCTTCAGCTTTAATCTAAT--AC-G--ACGCCAAGGAAATAAGATTTGCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * ** * * *
1020289 TCTTTCAGCTTTAATTTGTTCCACTGTAATGCAAAGG
66 GCCTTCAGCTTTAA-----TCTACTGCGACGCCAGGG
* * * **** **
1020326 AAATGTA-ATTCGCTGTCGTT-AGCTTTAATCTGTTCTACTGCAATATTAAGGAAATAAGATTTT
1 AAAT-AAGATTCGCTG-CCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCG
* * * * * *
1020389 CTGGCTTTAGCTTCAGTCTATTGCGACGTCAGGG
64 CTGCCTTCAGCTTTAATCTACTGCGACGCCAGGG
* * * ** * * * *
1020423 AAATAAGATTTGGTGCCTTCTGCTTTAATCTGTTATACTACAACTCCAAGGAAATAAAATTTGCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * *
1020488 GCCTTCAACTTTAATCAACTGTGACGACAGGG
66 GCCTTCAGCTTTAATCTACTGCGACGCCAGGG
* * * *
1020520 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACACCAAAGAAATGAGATTTGCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * *
1020585 ACCTTCAGCTTTAATCTAATGCGATGCCAAGG
66 GCCTTCAGCTTTAATCTACTGCGACGCCAGGG
* * * * * * * **
1020617 AAATAAGATTTGCTACCTTCA-ATTGTAATTTGATCCACTGCAATGCCAAGAAAATGGGATTCGC
1 AAATAAGATTCGCTGCCTTCAGCTT-TAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGC
* * * * **
1020681 TGCCATCAGCTATAATCTGTTCCACTACAACGCCAACG
65 TGCCTTCAGCTTTAATC---T--ACTGCGACGCCAGGG
* * ** * *
1020719 AAATAAGATTCGCTACCTTCAGCTTGAATC---T--ACTGTGATGACAAGGAAATAAGATTCGCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * *
1020779 GCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAGG
66 GCCTTCAGCTTTAA-----TCTACTGCGACGCCAGGG
*** * * * *
1020816 AAATAAGATTTATTGCCTTCAGCTTTAATATGTTCCACTGTAA--CTAAGGAAATAAGATTCACT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * *
1020879 GCCTTAAGGTTTAATCTACT-CTGACGCCAGCG
66 GCCTTCAGCTTTAATCTACTGC-GACGCCAGGG
* * * * * **
1020911 AAATAAGATTTGCTGCCTTCAACTTTAATCAGTTCAACTGCAACGCCAAGGAAAT-GGATTTTCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * * * *
1020975 ACCTTTAGCTTTCATCTAATGCGATGCCAAGG
66 GCCTTCAGCTTTAATCTACTGCGACGCCAGGG
* * * * *
1021007 AAATAAGATTTGCTGCCTTCAGCTTTAATTTGTTCCACTGCAATGCCAAGGAAAT-GGAATTCGT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAG-ATTCGC
* * *
1021071 TGCTTTCAGCTTTAATCTGTTCCACTGCAAC-ACAGGGG
65 TGCCTTCAGCTTTAATC---T--ACTGCGACGCCA-GGG
** * * * * * * * * * *
1021109 AAATAAGAGCCGTTGGCTTTAGCTTT-A---G-TCTACTACGACGTCAGGGAAATAAGATTTGTT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * *
1021169 GCCTTCTGCTTTACTCTGTTATACTGCAACGGCAGGG
66 GCCTTCAGCTTTAATC-----TACTGCGACGCCAGGG
* * * *
1021206 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCTACTGAAACGCCAAGGAAATAAGATTCACC
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * * **
1021271 GCCTTTACCTTTAGTCTATTGCGGTGCCAGGG
66 GCCTTCAGCTTTAATCTACTGCGACGCCAGGG
* * * *
1021303 AAATAAGATTC-CTTGCCTTCAGCTTTAATCTGTTCCACTACAACGGCAAGGAGATGAGATTCGC
1 AAATAAGATTCGC-TGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGC
* * * * *
1021367 TGCCTTCAGCTTTAACCTGTTCCACTGCAATGCTAAGG
65 TGCCTTCAGCTTTAA-----TCTACTGCGACGCCAGGG
* * * * * *
1021405 AAATAAGATTTGCTACCTTCAGCTTTAA--T-TT--ACTACGACGACATGGAAATAA-AGTTCGC
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGA-TTCGC
* * * *
1021464 TACCTTCAGTTTTAATCTGTTCCACTGCAACGCCAAGG
65 TGCCTTCAGCTTTAATC---T--ACTGCGACGCCAGGG
** ** * **
1021502 AAATAAGATTTACTGCCTTCAATTTTAATATGTTCCACTGCAACGCCAAGGAAATAAGATTTACT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
** * * *
1021567 GCCTTCAATTTTAATATGTTCCACTGCAACGCCAAGG
66 GCCTTCAGCTTT-A-A---TCTACTGCGACGCCAGGG
* * * * * * *
1021604 AAATAAGATTCTCTGCCTTCAACTTT-AGC--TT--ACTGCGACGCCAGGGATATAAGATTCACT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * * *
1021664 GCCTTTAG-TGTTAATCTGTTCCACTGCAATGCCAAGA
66 GCCTTCAGCT-TTAATC---T--ACTGCGACGCCAGGG
* * * * * * *
1021701 AAATGAGATTCGCTGCATTCAGCTTTAA-C----CTACTGCGATGCCAGGGAAATAAGATTCACT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* ** * *
1021761 GGCTTCAGGTCTAATCTGTTCTACTGCAACGCTTA-GG
66 GCCTTCA-G-CT--T-TAATCTACTGCGACGC-CAGGG
* * **** * *
1021798 AAATAAGATTCGATGCCTTCAGCTTTAATCTATT--AC-G--ACGTTGGGGAAATGAGGTTCGCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * *
1021858 GCCTTCAGCTTTAATTTGTTCAACTGTGATGCCAAAGG
66 GCCTTCAGCTTTAA-----TCTACTGCGACGCC-AGGG
* * * * **
1021896 -AATAAGATTCACTTCCTTCAGCTTTAATC---T--ACTGCAACACCAGGGAAATGTGATTCGCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * *
1021955 GCCTTCAAG-TTTAACCTACTACGACTCCAGGT
66 GCCTTC-AGCTTTAATCTACTGCGACGCCAGGG
* * * *
1021987 AAATAAGATTCGCTGCCTTTAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACC
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* *
1022052 GCCTTCAGCTTTAATCTACTACGATGCCAGGG
66 GCCTTCAGCTTTAATCTACTGCGACGCCAGGG
** * * * * * *
1022084 AAATAAGATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAAAAAGATTTGCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * *
1022149 GCCTTCAGCTTTAATCTGCTGTGATGCTAGGG
66 GCCTTCAGCTTTAATCTACTGCGACGCCAGGG
** * * * * *
1022181 AAATAAGATTTACTACCTTCAGCTTTAATCTGTTCCACTACAAC-ACAATCGAAATAAGATTCAC
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATAAGATTCGC
* * *
1022245 TGCCTTCAGTTTTAATCTACTACGATGCCAGGG
65 TGCCTTCAGCTTTAATCTACTGCGACGCCAGGG
* * * * * * *
1022278 AAATAAGATTCACTGCCTTCAGTTTTAATC---T--ACTACGATGCCAGGGAAATAAGATTCACT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* ** **
1022338 G-CTTCAGCTTTAATCTGTTCCACTGCAACGAAAAAG
66 GCCTTCAGCTTTAATC---T--ACTGCGACGCCAGGG
* * * * * * *
1022374 AAATAAGATTCGC-GACCTTCAGGTTTAATC---T--ACAGCGACGCCAGGGAAATAAAATCCAC
1 AAATAAGATTCGCTG-CCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGC
* * *
1022433 TGGCTTCAGCTTTAATCTGTTCCACTGCAACGCTGAGGG
65 TGCCTTCAGCTTTAATC---T--ACTGCGACGC-CAGGG
* * * * *
1022472 -AATAAGACTCG-TGTCCTTCTGATTTAATC---T--ACTGCCACGCCAGGGAAATAAGATTCGC
1 AAATAAGATTCGCTG-CCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGC
*
1022530 TGCCTTCAGCTTTAATCTACTGCGACGCCAATGCCAAAG
65 TGCCTTCAGCTTTAATCTACTGCGACGCC-A-G----GG
* * * * * *
1022569 AAATGAGATTCACTGCCTTCAGCTTTAA--T-TT--ACTACAACGGCAGGGAAATAAGATTTGCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
*
1022629 GCCTTTAGCTTTAATCTACTGCGACGCCAGGG
66 GCCTTCAGCTTTAATCTACTGCGACGCCAGGG
* * * *
1022661 AAATAAGATTCGTTGCCTTGAGATTTAATCTGTTCCACTGCAACGCCAAAGAAATAAGATTCGCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * *
1022726 TCCTTCTGCTTTAATCTACTTCGACCCCA-GG
66 GCCTTCAGCTTTAATCTACTGCGACGCCAGGG
* * * * *
1022757 AAATAAGATTCGTTACCTTCAACTTTAATCTGTTCCACTACAACGCCAAGGAAATGAGA-T---T
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * * *
1022818 -CATTCAGCTTTAATCTACTGTGACCCCCTGGG
66 GCCTTCAGCTTTAATCTACTGCGA-CGCCAGGG
* * * *
1022850 AAATAAGATTCGCTACCTTCAGCTTTAATCTGTTCCACTACAACGCCAAGGAAATGAGATTCACT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* *
1022915 GCCTTCAGCTTTAACCTACTGCGACGCTAGGG
66 GCCTTCAGCTTTAATCTACTGCGACGCCAGGG
** * * * * * * *
1022947 AAATAAGATTTACTACCTTCAACTTGAATCTGTTCCACTACAACGCGAGGGAAATGAGATTCGCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
* * *
1023012 GCCTTTAGCTTTAATCTACTGCGACGCTAGGA
66 GCCTTCAGCTTTAATCTACTGCGACGCCAGGG
* * * * * * * * *
1023044 AAATAAGATTTGTTGTCTTCAGCTTTCATC---T--ACTCCGATGCCAAGGAAATAAGATTTGTT
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
1023104 GCCTTCAGCTTTAATCTA
66 GCCTTCAGCTTTAATCTA
1023122 TTCCACTACA
Statistics
Matches: 5396, Mismatches: 1134, Indels: 681
0.75 0.16 0.09
Matches are distributed among these distances:
89 2 0.00
90 125 0.02
91 59 0.01
92 244 0.05
93 72 0.01
94 21 0.00
95 72 0.01
96 416 0.08
97 3584 0.66
98 141 0.03
99 30 0.01
100 52 0.01
101 39 0.01
102 521 0.10
103 12 0.00
104 2 0.00
107 4 0.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (97 bp):
AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCT
GCCTTCAGCTTTAATCTACTGCGACGCCAGGG
Found at i:1023422 original size:46 final size:46
Alignment explanation
Indices: 1023372--1024573 Score: 339
Period size: 46 Copynumber: 25.2 Consensus size: 46
1023362 TTCCTTCTGA
*
1023372 TTTAATCTACTGCGACGCTAGGGAAATAAGATTCGCTGCCTTCAGC
1 TTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGC
* * *
1023418 TTTAATCTACTGCGACGCCAGAGAAATCAGATTCGCTGCCTTTAGC
1 TTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGC
* * * * * *
1023464 TTTAATCTATTCCACTACAACGCTAAGGAAATGAGATTCGCTGCCTTCAAC
1 TTTAATC---T--ACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGC
* * * *
1023515 TTTAATCTACTGCGACGCCAAGGAAATAAGATTTGCTGCCCTCAAC
1 TTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGC
* * * * * ** *
1023561 ATTAATCTGTTTCACTGCAACACCAAGAAAAGGAGATTCGTTGCCTTCAGC
1 TTTAATC----T-ACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGC
* * * *
1023612 TTTAATCTACTGCGTCGCCAGGAAAATAAGATTTGTTGCCTTCAGC
1 TTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGC
* * * *
1023658 TTTAATCTATTCCACTACAACACCAAGGG-AATAAGATTCGCTGCCTTTAGC
1 TTTAATC---T--ACTGCGACGCC-AGGGAAATAAGATTCGCTGCCTTCAGC
* * *
1023709 TTTAATCTACTGCGACGCCAGGGAAATAAGATTTGATGCCTTTAGC
1 TTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGC
* * * ** ** * * *
1023755 TTTAATCTGTTCCACTACAACGCAAAAGAAATAAGATTATC-GGCTTTA-A
1 TTTAATC---T--ACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGC
* * * * ** ** ** *
1023804 TCTACTCCACTGCAACTTCAGGGTTATAAGATTCGTCATTTTCTTCAAAC
1 TTTAATCTACTGCGACGCCAGGGAAATAAGATTCG-C--TGCCTTC-AGC
* * * * * * * * *
1023854 --CATTCCACTGCAATGCTAGGAAAATAAGATTTGCT--CTTCAAC
1 TTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGC
* *** * * ** * * * * * * *
1023896 -CTGCCCCACTGCAACTTCAGAGG-GATCAGGTTTG-TGGCTTTA-A
1 TTTAATCTACTGCGACGCCAG-GGAAATAAGATTCGCTGCCTTCAGC
* ** * ** *** ** * *
1023939 TCTGCTCCACTGAAACTTAATAGAGATAAGA-T--CTGCCATGAT-AAC
1 TTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCC-T--TCAGC
* * * *
1023984 TTCAAACCATCCCACTGCGATGCTAGGGAAATAAGATTCGCTGCCTTCAGC
1 TT--TA--AT-CTACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGC
* * * * * *
1024035 TTTAATCTACTGTGACGCTAGAGAAATAAGATTCGCTGGCTCCAAC
1 TTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGC
** * * * * *
1024081 TTTAATCTGTTCCACTGTAAAGCCAAGGAAATGAGATTCGTTGCCTTTAGC
1 TTTAATC---T--ACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGC
* * ***
1024132 TTTAATCTACTGCGACACCAGGAAAATAAGATTAATTGCCTTCAGC
1 TTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGC
* * * * *
1024178 TTTAATTTGTTCCACTACAACGCCAAGGAAATAAGATTCACTGCCTTCAGC
1 TTTAA-----TCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGC
* * * *
1024229 TTTAATCTATTGCGACACTAGGGAAATAAGATTCGCTGCCTTCAAC
1 TTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGC
* * * * * *
1024275 TTTAATCTGTTCCACTACAATGCCAAGAAAATGAGATTCGCTGCCTTCAGC
1 TTTAATC---T--ACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGC
* * * * *
1024326 TTTAATCTACTACGACGCTAGGGAAATAAGATTTGCTACGTTCAGC
1 TTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGC
* ** * * * * * *
1024372 TTTAATTTATTCCACTACAAGCCAAGGAAATGAGATTCACTACCTTCAGG
1 TTTAATCTA--CTGCGAC--GCCAGGGAAATAAGATTCGCTGCCTTCAGC
* * * *
1024422 TTTAATCTACTACGATC-CCAAGGAAATAAGATTCGCTGGCTTTAGC
1 TTTAATCTACTGCGA-CGCCAGGGAAATAAGATTCGCTGCCTTCAGC
* ** * * * *
1024468 TTTAATCTGTTCCACTGCAACATCATGGAAATGAGATTTGGTGCCTTCAGC
1 TTTAATC---T--ACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGC
* * * * *
1024519 TTTAATCTACTGCGATGTCAGGGAAATAAGATTCGTTGCTTTTAGC
1 TTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGC
1024565 TTTAATCTA
1 TTTAATCTA
1024574 TTCCACTGCA
Statistics
Matches: 857, Mismatches: 225, Indels: 148
0.70 0.18 0.12
Matches are distributed among these distances:
42 7 0.01
43 26 0.03
44 44 0.05
45 8 0.01
46 377 0.44
47 4 0.00
48 40 0.05
49 15 0.02
50 56 0.07
51 271 0.32
52 4 0.00
53 5 0.01
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (46 bp):
TTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGC
Found at i:1023501 original size:97 final size:97
Alignment explanation
Indices: 1023393--1023792 Score: 516
Period size: 97 Copynumber: 4.1 Consensus size: 97
1023383 GCGACGCTAG
* *
1023393 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGAGAAATCAGATTCGCTGCC
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGAGAAATAAGATTTGCTGCC
* *
1023458 TTTAGCTTTAATCTATTCCACTACAACGCTAA
66 TTCAGCTTTAATCTATTCCACTACAACGCCAA
* *
1023490 GGAAATGAGATTCGCTGCCTTCAACTTTAATCTACTGCGACGCCA-AGGAAATAAGATTTGCTGC
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGA-GAAATAAGATTTGCTGC
* * * * * * *
1023554 CCTCAACATTAATCTGTTTCACTGCAACACCAA
65 CTTCAGCTTTAATCTATTCCACTACAACGCCAA
* ** * * *
1023587 GAAAAGGAGATTCGTTGCCTTCAGCTTTAATCTACTGCGTCGCCAG-GAAAATAAGATTTGTTGC
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGAG-AAATAAGATTTGCTGC
*
1023651 CTTCAGCTTTAATCTATTCCACTACAACACCAA
65 CTTCAGCTTTAATCTATTCCACTACAACGCCAA
* * * *
1023684 GGGAATAAGATTCGCTGCCTTTAGCTTTAATCTACTGCGACGCCAGGGAAATAAGATTTGATGCC
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGAGAAATAAGATTTGCTGCC
* * *
1023749 TTTAGCTTTAATCTGTTCCACTACAACGCAAA
66 TTCAGCTTTAATCTATTCCACTACAACGCCAA
*
1023781 AGAAATAAGATT
1 GGAAATAAGATT
1023793 ATCGGCTTTA
Statistics
Matches: 260, Mismatches: 39, Indels: 8
0.85 0.13 0.03
Matches are distributed among these distances:
96 2 0.01
97 257 0.99
98 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.29
Consensus pattern (97 bp):
GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGAGAAATAAGATTTGCTGCC
TTCAGCTTTAATCTATTCCACTACAACGCCAA
Found at i:1024111 original size:97 final size:97
Alignment explanation
Indices: 1024010--1024602 Score: 649
Period size: 97 Copynumber: 6.1 Consensus size: 97
1024000 GCGATGCTAG
* * *
1024010 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGTGACGCTAGAGAAATAAGATTCGCTGGC
1 GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCTAGGGAAATAAGATTCGCTGGC
* * *
1024075 TCCAACTTTAATCTGTTCCACTGTAAAGCCAA
66 TTCAGCTTTAATCTGTTCCACTGCAAAGCCAA
* * * * * *** *
1024107 GGAAATGAGATTCGTTGCCTTTAGCTTTAATCTACTGCGACACCAGGAAAATAAGATTAATTGCC
1 GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCTAGGGAAATAAGATTCGCTGGC
* * *
1024172 TTCAGCTTTAATTTGTTCCACTACAACGCCAA
66 TTCAGCTTTAATCTGTTCCACTGCAAAGCCAA
* * * * *
1024204 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTATTGCGACACTAGGGAAATAAGATTCGCTGCC
1 GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCTAGGGAAATAAGATTCGCTGGC
* * *
1024269 TTCAACTTTAATCTGTTCCACTACAATGCCAA
66 TTCAGCTTTAATCTGTTCCACTGCAAAGCCAA
* * * *
1024301 GAAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTACGACGCTAGGGAAATAAGATTTGCT-AC
1 GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCTAGGGAAATAAGATTCGCTGGC
* * *
1024365 GTTCAGCTTTAATTTATTCCACTAC-AAGCCAA
66 -TTCAGCTTTAATCTGTTCCACTGCAAAGCCAA
* * * * * *
1024397 GGAAATGAGATTCACTACCTTCAGGTTTAATCTACTACGATC-CCAAGGAAATAAGATTCGCTGG
1 GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTGCGA-CGCTAGGGAAATAAGATTCGCTGG
* * *
1024461 CTTTAGCTTTAATCTGTTCCACTGCAACA-TCAT
65 CTTCAGCTTTAATCTGTTCCACTGCAA-AGCCAA
* * * *
1024494 GGAAATGAGATTTGGTGCCTTCAGCTTTAATCTACTGCGATG-TCAGGGAAATAAGATTCG-TTG
1 GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCT-AGGGAAATAAGATTCGCTGG
* * *
1024557 CTTTTAGCTTTAATCTATTCCACTGCAACGCCAA
65 C-TTCAGCTTTAATCTGTTCCACTGCAAAGCCAA
*
1024591 AGAAATGAGATT
1 GGAAATGAGATT
1024603 ATGGGCTTTA
Statistics
Matches: 415, Mismatches: 72, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
96 83 0.20
97 331 0.80
98 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (97 bp):
GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCTAGGGAAATAAGATTCGCTGGC
TTCAGCTTTAATCTGTTCCACTGCAAAGCCAA
Found at i:1024355 original size:194 final size:193
Alignment explanation
Indices: 1024010--1024602 Score: 742
Period size: 194 Copynumber: 3.1 Consensus size: 193
1024000 GCGATGCTAG
* * *
1024010 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGTGACGCTAGAGAAATAAGATTCGCTGGC
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTACTGCGAC-CTAGGGAAATAAGATTCGCTGGC
* * * *
1024075 TCCAACTTTAATCTGTTCCACTGTAAAGCCAAGGAAATGAGATTCGTTGCCTTTAGCTTTAATCT
65 TTCAACTTTAATCTGTTCCACTGCAAAGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCT
* * * * *
1024140 ACTGCGACACCAGGAAAATAAGATTAATTGCCTTCAGCTTTAATTTGTTCCACTACAACGCCAA
130 ACTGCGACGCTAGGGAAATAAGATTAGTTGCCTTCAGCTTTAATTTATTCCACTACAACGCCAA
* *
1024204 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTATTGCGACACTAGGGAAATAAGATTCGCTGCC
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTACTGCGAC-CTAGGGAAATAAGATTCGCTGGC
* * *
1024269 TTCAACTTTAATCTGTTCCACTACAATGCCAAGAAAATGAGATTCGCTGCCTTCAGCTTTAATCT
65 TTCAACTTTAATCTGTTCCACTGCAAAGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCT
* * * * *
1024334 ACTACGACGCTAGGGAAATAAGATTTGCTACGTTCAGCTTTAATTTATTCCACTACAA-GCCAA
130 ACTGCGACGCTAGGGAAATAAGATTAGTTGCCTTCAGCTTTAATTTATTCCACTACAACGCCAA
* * * * * *
1024397 GGAAATGAGATTCACTACCTTCAGGTTTAATCTACTACGATCCCAAGGAAATAAGATTCGCTGGC
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTACTGCGA-CCTAGGGAAATAAGATTCGCTGGC
* * * * * *
1024462 TTTAGCTTTAATCTGTTCCACTGCAACA-TCATGGAAATGAGATTTGGTGCCTTCAGCTTTAATC
65 TTCAACTTTAATCTGTTCCACTGCAA-AGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATC
* * * * * *
1024526 TACTGCGATG-TCAGGGAAATAAGATTCGTTGCTTTTAGCTTTAATCTATTCCACTGCAACGCCA
129 TACTGCGACGCT-AGGGAAATAAGATTAGTTGCCTTCAGCTTTAATTTATTCCACTACAACGCCA
1024590 A
193 A
* *
1024591 AGAAATGAGATT
1 GGAAATAAGATT
1024603 ATGGGCTTTA
Statistics
Matches: 345, Mismatches: 50, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
192 1 0.00
193 162 0.47
194 182 0.53
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (193 bp):
GGAAATAAGATTCACTGCCTTCAGCTTTAATCTACTGCGACCTAGGGAAATAAGATTCGCTGGCT
TCAACTTTAATCTGTTCCACTGCAAAGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTA
CTGCGACGCTAGGGAAATAAGATTAGTTGCCTTCAGCTTTAATTTATTCCACTACAACGCCAA
Found at i:1027650 original size:107 final size:107
Alignment explanation
Indices: 1027485--1027689 Score: 295
Period size: 107 Copynumber: 1.9 Consensus size: 107
1027475 AGAGCCATGG
* * *
1027485 TTTAAAAGGATATTTTGCTATTTAGGTTAAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTC
1 TTTAAAAGGATATTTGGCTATTTAGGTCAAACGAGAAATCGAAACCCAACACGTTAGGGCACGTC
**
1027550 TTCTCAAATTTCCCAAATGCAAAATATTGCCTTACTTTGAAAT
66 TTCTCAAATTT-CCAAACACAAAATATTGCCTTACTTTGAAAT
* ** * *
1027593 TTTAAAAGGATATTTGGCTATTT-GGTCGAGTGAGGAATCGAAACCCAACACGTTAGGGCACGTT
1 TTTAAAAGGATATTTGGCTATTTAGGTCAAACGAGAAATCGAAACCCAACACGTTAGGGCACGTC
*
1027657 TTCTCGAATTTCCAAACACAAAATATTGCCTTA
66 TTCTCAAATTTCCAAACACAAAATATTGCCTTA
1027690 TTTTAAAACT
Statistics
Matches: 86, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
106 20 0.23
107 44 0.51
108 22 0.26
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.31
Consensus pattern (107 bp):
TTTAAAAGGATATTTGGCTATTTAGGTCAAACGAGAAATCGAAACCCAACACGTTAGGGCACGTC
TTCTCAAATTTCCAAACACAAAATATTGCCTTACTTTGAAAT
Found at i:1028211 original size:2 final size:2
Alignment explanation
Indices: 1028204--1028234 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
1028194 AATTTAAAAG
*
1028204 AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1028235 ATAGTTTACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1029801 original size:9 final size:9
Alignment explanation
Indices: 1029787--1029816 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
1029777 TTCCTTTTCC
1029787 TTTTCCTTT
1 TTTTCCTTT
1029796 TTTTCCTTT
1 TTTTCCTTT
1029805 TTTT-CTTT
1 TTTTCCTTT
1029813 TTTT
1 TTTT
1029817 ATCATTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTCCTTT
Found at i:1036652 original size:97 final size:99
Alignment explanation
Indices: 1036527--1037294 Score: 785
Period size: 97 Copynumber: 7.8 Consensus size: 99
1036517 GTGATGCTAG
* *
1036527 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCT
1 GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCG
*
1036592 CTGCCTTCAACTTTAATC-T-ACTGCAACACCAA
66 CTGCCTTCAGCTTTAATCTTCACTGCAACACCAA
* * * * *
1036624 GGAAATAAGATTAGTTGCCTTCAACTTTAATCTGTTCCACTGCAATGCCAAGGAAATAAGATTCG
1 GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCG
* *
1036689 CTGTCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
66 CTGCCTTCAGCTTTAATC--TT-CACTGCAACACCAA
* * *
1036726 GGAATTGAGATTCACTGCCTTCAGCTTTAATC---T--ACTGCGACG-CAAGGGAAATAAGATTC
1 GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATAAGATTC
* *
1036785 GCTACCTTCAGCTTTAATCTGTTCCACTGCAACTCCAA
65 GCTGCCTTCAGCTTTAATC--TT-CACTGCAACACCAA
* * * *
1036823 GGAAATGAGATTCGCTGCCTTTAGCTTTAATC---T--ACTGCGACGCGAGGGAAATAAGATTCG
1 GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCG
*
1036883 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACACTAA
66 CTGCCTTCAGCTTTAATC--TT-CACTGCAACACCAA
* * *
1036920 GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACACTAAGGAAATGAGATTCG
1 GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCG
** * * *
1036985 CTGCCTTCAGCTTTAATC-T-ACTGTGACGCTAG
66 CTGCCTTCAGCTTTAATCTTCACTGCAACACCAA
* * * * * *
1037017 GGAAATAAGATTTGCTGCCTTCGGCTTTAATCTGTTCCACTGCAACACTAAGGAAATGAGATTCG
1 GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCG
*
1037082 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACACTAA
66 CTGCCTTCAGCTTTAATC--TT-CACTGCAACACCAA
* * * * *
1037119 GGAAATGAGATTCGCTGCCTTCAGCTTTAA-----TCAACTGCGACGCTAGGGAAATAAGATTTG
1 GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCG
* * **
1037179 TTGCCTTCAGCTTTAATCCGTTCCACCGCAATGCCAA
66 CTGCCTTCAGCTTTAAT-C-TT-CACTGCAACACCAA
* * * *
1037216 GGAAATGAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACACCAGGGAAATAAGATTTG
1 GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCG
1037276 CTGCCTTCAGCTTTAATCT
66 CTGCCTTCAGCTTTAATCT
1037295 ACTGCGATGC
Statistics
Matches: 590, Mismatches: 61, Indels: 42
0.85 0.09 0.06
Matches are distributed among these distances:
95 1 0.00
96 4 0.01
97 463 0.78
98 2 0.00
99 3 0.01
100 3 0.01
102 114 0.19
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (99 bp):
GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCG
CTGCCTTCAGCTTTAATCTTCACTGCAACACCAA
Found at i:1036690 original size:148 final size:145
Alignment explanation
Indices: 1036527--1037336 Score: 872
Period size: 148 Copynumber: 5.5 Consensus size: 145
1036517 GTGATGCTAG
*
1036527 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCT
1 GGAAATGAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCAACGCCAAGGAAATAAGATTCT
* * * *
1036592 CTGCCTTCAACTTTAATC-T-ACTGCAACACCAAGGAAATAAGATTAGTTGCCTTCAACTTTAAT
61 CTGCCTTCAGCTTTAATCTTCACTGCAACACCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAAT
**
1036655 CTGTTCCACTGCAATGCCAA
126 CTGTTCCACTGCAACACCAA
* * * * *
1036675 GGAAATAAGATTCGCTGTCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAATTGAGATTCA
1 GGAAATGAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCAACGCCAAGGAAATAAGATTCT
* * *
1036740 CTGCCTTCAGCTTTAATC-T-ACTGCGAC-GCAAGGGAAATAAGATTCGCTACCTTCAGCTTTAA
61 CTGCCTTCAGCTTTAATCTTCACTGCAACACCAA-GGAAATAAGATTCGCTGCCTTCAGCTTTAA
*
1036802 TCTGTTCCACTGCAACTCCAA
125 TCTGTTCCACTGCAACACCAA
* * * * *
1036823 GGAAATGAGATTCGCTGCCTTTAGCTTTAATCTACTGCGACGCGAGGGAAATAAGATTCGCTGCC
1 GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTGCAACGCCAAGGAAATAAGATTCTCTGCC
* *
1036888 TTCAGCTTTAATCTGTTCCACTGCAACACTAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCT
66 TTCAGCTTTAATC--TT-CACTGCAACACCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT
*
1036953 GTTCCACTGCAACACTAA
128 GTTCCACTGCAACACCAA
** * *
1036971 GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTGTGACGCTAGGGAAATAAGATT-TGCTGC
1 GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTGCAACGCCAAGGAAATAAGATTCT-CTGC
* * *
1037035 CTTCGGCTTTAATCTGTTCCACTGCAACACTAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATC
65 CTTCAGCTTTAATC--TT-CACTGCAACACCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATC
*
1037100 TGTTCCACTGCAACACTAA
127 TGTTCCACTGCAACACCAA
* * * * *
1037119 GGAAATGAGATTCGCTGCCTTCAGCTTTAATCAACTGCGACGCTAGGGAAATAAGATT-TGTTGC
1 GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTGCAACGCCAAGGAAATAAGATTCT-CTGC
* ** *
1037183 CTTCAGCTTTAATCCGTTCCACCGCAATGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATC
65 CTTCAGCTTTAAT-C-TT-CACTGCAACACCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATC
* *
1037248 ---T--ACTGCGACACCAG
127 TGTTCCACTGCAACACCAA
* * * * * *
1037262 GGAAATAAGATTTGCTGCCTTCAGCTTTAATCTACTGCGATGCCAGGGAAATAAAATT-TGCTGC
1 GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTGCAACGCCAAGGAAATAAGATTCT-CTGC
*
1037326 CTTTAGCTTTA
65 CTTCAGCTTTA
1037337 CAACCCTCGC
Statistics
Matches: 600, Mismatches: 53, Indels: 23
0.89 0.08 0.03
Matches are distributed among these distances:
143 116 0.19
145 2 0.00
146 1 0.00
147 3 0.00
148 475 0.79
149 3 0.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (145 bp):
GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTGCAACGCCAAGGAAATAAGATTCTCTGCC
TTCAGCTTTAATCTTCACTGCAACACCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
CCACTGCAACACCAA
Found at i:1036955 original size:245 final size:245
Alignment explanation
Indices: 1036525--1037294 Score: 1091
Period size: 245 Copynumber: 3.1 Consensus size: 245
1036515 CTGTGATGCT
* *
1036525 AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATT
1 AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACACCAAGGAAATGAGATT
* * * * *
1036590 CTCTGCCTTCAACTTTAATCTACTGCAACACCAAGGAAATAAGATTAGTTGCCTTCAACTTTAAT
66 CGCTGCCTTCAGCTTTAATCTACTGCAACACCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAAT
* * *
1036655 CTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTGTCTTCAGCTTTAATCTGTTCCACTGCAA
131 CTGTTCCACTGCAACGCTAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAA
* *
1036720 CGCCAAGGAATTGAGATTCACTGCCTTCAGCTTTAATCTACTGCGACGCA
196 CGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCA
* *
1036770 AGGGAAATAAGATTCGCTACCTTCAGCTTTAATCTGTTCCACTGCAACTCCAAGGAAATGAGATT
1 AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACACCAAGGAAATGAGATT
* * * * *
1036835 CGCTGCCTTTAGCTTTAATCTACTGCGACGCGAGGGAAATAAGATTCGCTGCCTTCAGCTTTAAT
66 CGCTGCCTTCAGCTTTAATCTACTGCAACACCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAAT
* *
1036900 CTGTTCCACTGCAACACTAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAA
131 CTGTTCCACTGCAACGCTAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAA
* * * *
1036965 CACTAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTGTGACGCT
196 CGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCA
* * *
1037015 AGGGAAATAAGATTTGCTGCCTTCGGCTTTAATCTGTTCCACTGCAACACTAAGGAAATGAGATT
1 AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACACCAAGGAAATGAGATT
* *
1037080 CGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACACTAAGGAAATGAGATTCGCTGCCTTCAGCT
66 CGCTGCCTTCAGCTTTAATC---T--ACTGCAACACCAAGGAAATAAGATTCGCTGCCTTCAGCT
* * * * * *
1037145 TTAA-----TCAACTGCGACGCTAGGGAAATAAGATTTGTTGCCTTCAGCTTTAATCCGTTCCAC
126 TTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCAC
* * * *
1037205 CGCAATGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACACC
191 TGCAACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCA
*
1037260 AGGGAAATAAGATTTGCTGCCTTCAGCTTTAATCT
1 AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT
1037295 ACTGCGATGC
Statistics
Matches: 469, Mismatches: 51, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
245 430 0.92
248 1 0.00
250 38 0.08
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (245 bp):
AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACACCAAGGAAATGAGATT
CGCTGCCTTCAGCTTTAATCTACTGCAACACCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAAT
CTGTTCCACTGCAACGCTAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAA
CGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCA
Found at i:1040513 original size:144 final size:144
Alignment explanation
Indices: 1040316--1040752 Score: 770
Period size: 144 Copynumber: 3.0 Consensus size: 144
1040306 AAAGCTTGCC
* *
1040316 AATTTCTTTTGGG-ATAGAACCTTTTAATAGATTAGAACCAAGGCTTAAGTCCAGCATCTTTGAT
1 AATTTC-TTGGGGAATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGTCCAGCATCTTTGAT
*
1040380 AAACTACCAATACAAGAAGGGATTGAACCAGTCAATTTGTTTTGGGAGATGTACAATGAAGTCAA
65 AAACTACCAATACAAGAAGGGATTGAACCAGTCAATTTGTTTTGGGAGAGGTACAATGAAGTCAA
1040445 ATTTGCTAGATTACA
130 ATTTGCTAGATTACA
1040460 AATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGTCCAGCATCTTTGATA
1 AATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGTCCAGCATCTTTGATA
1040525 AACTACCAATACAAGAAGGGATTGAACCAGTCAATTTGTTTTGGGAGAGGTACAATGAAGTCAAA
66 AACTACCAATACAAGAAGGGATTGAACCAGTCAATTTGTTTTGGGAGAGGTACAATGAAGTCAAA
1040590 TTTGCTAGATTACA
131 TTTGCTAGATTACA
1040604 AATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGTCCAGCATCTTTGATA
1 AATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGTCCAGCATCTTTGATA
* * * * *
1040669 AACTACCAATACAAGAAGGGATTGAACCGGTCAATTTGATTTGGGAGAGGTCCAA-AAATGTTAA
66 AACTACCAATACAAGAAGGGATTGAACCAGTCAATTTGTTTTGGGAGAGGTACAATGAA-GTCAA
1040733 ATTTGCTAGATTACA
130 ATTTGCTAGATTACA
1040748 AATTT
1 AATTT
1040753 NNNNNNNNNN
Statistics
Matches: 283, Mismatches: 8, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
143 7 0.02
144 276 0.98
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.30
Consensus pattern (144 bp):
AATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGTCCAGCATCTTTGATA
AACTACCAATACAAGAAGGGATTGAACCAGTCAATTTGTTTTGGGAGAGGTACAATGAAGTCAAA
TTTGCTAGATTACA
Found at i:1044519 original size:16 final size:17
Alignment explanation
Indices: 1044498--1044530 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
1044488 CATGATAGAA
1044498 CATATAAATTT-AAAAT
1 CATATAAATTTGAAAAT
*
1044514 CATATATATTTGAAAAT
1 CATATAAATTTGAAAAT
1044531 TCTTTTAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (17 bp):
CATATAAATTTGAAAAT
Found at i:1045836 original size:16 final size:16
Alignment explanation
Indices: 1045811--1045843 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
1045801 TTATAGGTGG
1045811 AATTGGAATCATCAAT
1 AATTGGAATCATCAAT
*
1045827 AATTGTAATCATCAAT
1 AATTGGAATCATCAAT
1045843 A
1 A
1045844 TATTTGGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.33
Consensus pattern (16 bp):
AATTGGAATCATCAAT
Found at i:1054830 original size:144 final size:144
Alignment explanation
Indices: 1054421--1054801 Score: 649
Period size: 144 Copynumber: 2.6 Consensus size: 144
1054411 AAAGCTTGCC
* *
1054421 AATTTCTTTTGGG-ATAGAACCTTTTAATAGATTAGAACCAAGGGC-TAAGTCCTGCATCTTTGA
1 AATTTC-TTGGGGAATAGGACCTTTTAATAGATTAGAACCAA-GGCTTAAGTCCTGCATCTTTGA
**
1054484 TAAACTACCAATACAAGAAGGGATTGAACCAGTCAATTTGTTTTGGGAGAGGTACAATGAAGTCA
64 TAAACTACCAATACAAGAAGGGATTGAACCAGTCAATTTGTTTTGGGAGAGGTACAAAAAAGTCA
1054549 AATTTGCTAGATTACA
129 AATTTGCTAGATTACA
*
1054565 AATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGTCCAGCATCTTTGATA
1 AATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGTCCTGCATCTTTGATA
* * *
1054630 AACTACCAATACAAGAAGGGATTGAACCGGTCAATTTGTTTTGGGAGAGGTCCAAAAAAGTTAAA
66 AACTACCAATACAAGAAGGGATTGAACCAGTCAATTTGTTTTGGGAGAGGTACAAAAAAGTCAAA
1054695 TTTGCTAGATTACA
131 TTTGCTAGATTACA
1054709 AATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGTCCTGCATCTTTGATA
1 AATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGTCCTGCATCTTTGATA
*
1054774 AACTACCAACACAAGAAGGGATTGAACC
66 AACTACCAATACAAGAAGGGATTGAACC
1054802 TTGAAGTTGG
Statistics
Matches: 225, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
143 8 0.04
144 217 0.96
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.29
Consensus pattern (144 bp):
AATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGTCCTGCATCTTTGATA
AACTACCAATACAAGAAGGGATTGAACCAGTCAATTTGTTTTGGGAGAGGTACAAAAAAGTCAAA
TTTGCTAGATTACA
Found at i:1055073 original size:144 final size:144
Alignment explanation
Indices: 1054904--1055171 Score: 482
Period size: 144 Copynumber: 1.9 Consensus size: 144
1054894 GACCCAAAAA
* * * * *
1054904 AGTCAGATTTCTTAAATATCCAATTTCTAATGGGATAGATCCATTGATTTGGTTCCCCGAAAGGC
1 AGTCAAATTTCTCAAATATCCAATTTCTAATGGGATAGATCCATTGATTCGGTTCCACGAAAGGA
*
1054969 TCAGAGATTGGAGACTGGTTAATTGACCCAAAGCAGAAGGGATTGGACCAACAATTCCATTGCTG
66 TCAGAGATTGGAGACTGGTTAATTGACCCAAAGCAGAAGGGATTCGACCAACAATTCCATTGCTG
1055034 GAGAGACTCAAATC
131 GAGAGACTCAAATC
1055048 AGTCAAATTTCTCAAATATCCAATTTCTAATGGGATAGATCCATTGATTCGGTTCCACGAAAGGA
1 AGTCAAATTTCTCAAATATCCAATTTCTAATGGGATAGATCCATTGATTCGGTTCCACGAAAGGA
1055113 TCAGAGATTGGAGACTGGTTAATTGACCCAAAGCAGAAGGGATTCGACCAACAATTCCA
66 TCAGAGATTGGAGACTGGTTAATTGACCCAAAGCAGAAGGGATTCGACCAACAATTCCA
1055172 CATTGACTTA
Statistics
Matches: 118, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
144 118 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.26
Consensus pattern (144 bp):
AGTCAAATTTCTCAAATATCCAATTTCTAATGGGATAGATCCATTGATTCGGTTCCACGAAAGGA
TCAGAGATTGGAGACTGGTTAATTGACCCAAAGCAGAAGGGATTCGACCAACAATTCCATTGCTG
GAGAGACTCAAATC
Found at i:1058480 original size:100 final size:98
Alignment explanation
Indices: 1058357--1058538 Score: 267
Period size: 100 Copynumber: 1.8 Consensus size: 98
1058347 CCACAATGGC
** * *
1058357 GAATCTTGTTTCCGTGGCGGTGTAGTGGAAC-AGATTGAAGCTACGACGGTGAATCTTGTTTCCC
1 GAATCTTACTTCCCTGGCGGTGTAGTGGAACGA-ATTGAAGCTACGACGGCGAAT-TT-TTTCCC
*
1058421 CAATATTGCAATTAAAAAGATTAAAGCTGCAACGGT
63 CAACATTGCAATTAAAAAGATTAAAGCTGCAACGGT
*
1058457 GAATCTTACTTCCCTGGCGGTGTAGTGGAACGAATTGAAGCTACGACGGCGAATTTTTTTCCCAA
1 GAATCTTACTTCCCTGGCGGTGTAGTGGAACGAATTGAAGCTACGACGGCGAATTTTTTCCCCAA
*
1058522 CATTGCAATTTAAAAGA
66 CATTGCAATTAAAAAGA
1058539 CTGAAGATGG
Statistics
Matches: 74, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
98 23 0.31
99 2 0.03
100 48 0.65
101 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (98 bp):
GAATCTTACTTCCCTGGCGGTGTAGTGGAACGAATTGAAGCTACGACGGCGAATTTTTTCCCCAA
CATTGCAATTAAAAAGATTAAAGCTGCAACGGT
Found at i:1058609 original size:45 final size:45
Alignment explanation
Indices: 1058553--1058719 Score: 228
Period size: 45 Copynumber: 3.7 Consensus size: 45
1058543 AGATGGTGAA
* *
1058553 TCTTATATCCCTGAAGTTGCAGTGGAGCAGACCCAAGACAGCGAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCGAG
* *
1058598 TCTTATCTCCCTTAGGTTGCAGTGGAGCAGACCCAAGAAAGCGAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCGAG
* **
1058643 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAAGTAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCGAG
* * *
1058688 TCTTATC-CCCTTGAAATTACAGTGGGGCAGAC
1 TCTTATCTCCC-TGAAGTTGCAGTGGAGCAGAC
1058720 TAAATAAACA
Statistics
Matches: 109, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
44 3 0.03
45 106 0.97
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.23
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCGAG
Found at i:1060340 original size:21 final size:21
Alignment explanation
Indices: 1060302--1060341 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
1060292 TTTTATAATC
*
1060302 TATATATATATATCTATTTTT
1 TATATATATACATCTATTTTT
* *
1060323 TATATATGTACATGTATTT
1 TATATATATACATCTATTT
1060342 ATATTTTTCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57
Consensus pattern (21 bp):
TATATATATACATCTATTTTT
Found at i:1060401 original size:31 final size:31
Alignment explanation
Indices: 1060337--1060401 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
1060327 TATGTACATG
* *
1060337 TATTTATATTTTTCTAACGAATATTTTTCTA
1 TATTTATATATTTCTAACGAATATTTTTATA
*
1060368 TATTTATATATTT-TAATGAATATTTTATATA
1 TATTTATATATTTCTAACGAATATTTT-TATA
1060399 TAT
1 TAT
1060402 ACGTATATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
30 12 0.40
31 18 0.60
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (31 bp):
TATTTATATATTTCTAACGAATATTTTTATA
Found at i:1060774 original size:13 final size:13
Alignment explanation
Indices: 1060738--1060776 Score: 53
Period size: 12 Copynumber: 2.9 Consensus size: 13
1060728 GGTCATTTTT
1060738 TTTATATTAGTTTTG
1 TTTATATTA--TTTG
1060753 TTTAT-TTATTTG
1 TTTATATTATTTG
1060765 TTTATATTATTT
1 TTTATATTATTT
1060777 CTATGCCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 9 0.39
13 6 0.26
14 3 0.13
15 5 0.22
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.72
Consensus pattern (13 bp):
TTTATATTATTTG
Found at i:1060808 original size:15 final size:15
Alignment explanation
Indices: 1060788--1060817 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1060778 TATGCCATTA
1060788 TTGTATTTATTATTG
1 TTGTATTTATTATTG
*
1060803 TTGTATTTGTTATTG
1 TTGTATTTATTATTG
1060818 CTACATTTGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.00, G:0.17, T:0.67
Consensus pattern (15 bp):
TTGTATTTATTATTG
Found at i:1061808 original size:13 final size:13
Alignment explanation
Indices: 1061790--1061814 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1061780 TTGGTATAAA
1061790 TAAAATATATTTT
1 TAAAATATATTTT
1061803 TAAAATATATTT
1 TAAAATATATTT
1061815 AGAAAAGTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TAAAATATATTTT
Found at i:1069856 original size:27 final size:27
Alignment explanation
Indices: 1069826--1069923 Score: 115
Period size: 27 Copynumber: 3.6 Consensus size: 27
1069816 TCAGAGTTTG
**
1069826 CCACAAAGGCATTTCTTTTTTATTACA
1 CCACAAAGGCATTTCTTTCATATTACA
* ***
1069853 CCACAAAGGCTTTTCTTTCATATTGTG
1 CCACAAAGGCATTTCTTTCATATTACA
*
1069880 CCACAAAGGCTTTTCTTTCATATTACA
1 CCACAAAGGCATTTCTTTCATATTACA
* *
1069907 TCGCAAAGGCATTTCTT
1 CCACAAAGGCATTTCTT
1069924 CCCTAACGTG
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (27 bp):
CCACAAAGGCATTTCTTTCATATTACA
Found at i:1082894 original size:20 final size:20
Alignment explanation
Indices: 1082869--1082907 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
1082859 TGAGTTATTT
1082869 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
1082889 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
1082908 GAACAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:1090245 original size:50 final size:50
Alignment explanation
Indices: 1090147--1090276 Score: 152
Period size: 50 Copynumber: 2.6 Consensus size: 50
1090137 TATTGAGGTT
* *** *
1090147 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCGTTGGTACCAAG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGACACGGGCACCAAG
* *
1090197 ATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGACACGGGCACCAAT
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGACACGGGCACCAAG
** * * *
1090247 ATGAGAACTCTCATGTAAGACCATATCTGG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGG
1090277 AATTTGGCAT
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 67 1.00
ACGTcount: A:0.28, C:0.24, G:0.28, T:0.20
Consensus pattern (50 bp):
ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGACACGGGCACCAAG
Found at i:1092796 original size:30 final size:30
Alignment explanation
Indices: 1092760--1092833 Score: 94
Period size: 30 Copynumber: 2.5 Consensus size: 30
1092750 GGTGAAATAA
* * * *
1092760 GTTGCTCACACAATCTTACATTATATTAGG
1 GTTGCTCACACAAGCTGACATTATATCAAG
*
1092790 GTTGCTCATACAAGCTGACATTATATCAAG
1 GTTGCTCACACAAGCTGACATTATATCAAG
*
1092820 GTTGCTTACACAAG
1 GTTGCTCACACAAG
1092834 ATGAAATTTC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.32
Consensus pattern (30 bp):
GTTGCTCACACAAGCTGACATTATATCAAG
Found at i:1093973 original size:20 final size:22
Alignment explanation
Indices: 1093948--1093995 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 22
1093938 TTTGAAATGT
*
1093948 TTTTAAATAAGATTTCAAA-C-
1 TTTTAAATAAGATCTCAAATCA
*
1093968 TTTT-AATTAGATCTCAAATCA
1 TTTTAAATAAGATCTCAAATCA
1093989 TTTTAAA
1 TTTTAAA
1093996 ATTTAGCCCC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 12 0.52
20 5 0.22
21 4 0.17
22 2 0.09
ACGTcount: A:0.42, C:0.10, G:0.04, T:0.44
Consensus pattern (22 bp):
TTTTAAATAAGATCTCAAATCA
Found at i:1096195 original size:34 final size:34
Alignment explanation
Indices: 1096152--1096220 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
1096142 GTTTGCATGC
1096152 ATGCATACATGAAAAGGGAAAATTTTGGGGAAAA
1 ATGCATACATGAAAAGGGAAAATTTTGGGGAAAA
1096186 ATGCATACATGAAAAGGGAAAATTTTGGGGAAAA
1 ATGCATACATGAAAAGGGAAAATTTTGGGGAAAA
1096220 A
1 A
1096221 CAAACCATTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.48, C:0.06, G:0.26, T:0.20
Consensus pattern (34 bp):
ATGCATACATGAAAAGGGAAAATTTTGGGGAAAA
Found at i:1106478 original size:137 final size:138
Alignment explanation
Indices: 1106224--1106478 Score: 304
Period size: 137 Copynumber: 1.9 Consensus size: 138
1106214 AGCTGTAAAA
*
1106224 TGGGCCTGCTCACACAAGCTGATGGTCAAAATGTAAGCTACACGATCCTCCTCACACAAGCTGTC
1 TGGGCCTGCTCACACAAGCTGATGGTCAAAATATAAGCTACACGATCCTCCTCACACAAGCTGTC
* * **
1106289 GAGTATCCGCAACTAATATCGGACATCAGCCATTGGTAGGACATTCAAGACCAGCAACCGAAACA
66 AAGTATCCGCAACTAATATCGGACATCAGCCACTAATAGGACATTCAAGACCAGCAACCGAAACA
1106354 TGGTAACC
131 TGGTAACC
* * * * * * *
1106362 TGGGCCTGCTTATACAAGCTG-TCGGTCGAAATATAA-CTACACGGTGCTGCTGACACAAGCTGT
1 TGGGCCTGCTCACACAAGCTGAT-GGTCAAAATATAAGCTACACGATCCTCCTCACACAAGCTGT
* * *
1106425 TAAGTATCCGCAAC-ACATA-CAGGA-ACTCAGCCACTAATAGGACTTTCAGGACCA
65 CAAGTATCCGCAACTA-ATATC-GGACA-TCAGCCACTAATAGGACATTCAAGACCA
1106479 ACACCCAAAA
Statistics
Matches: 98, Mismatches: 15, Indels: 9
0.80 0.12 0.07
Matches are distributed among these distances:
136 3 0.03
137 65 0.66
138 30 0.31
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (138 bp):
TGGGCCTGCTCACACAAGCTGATGGTCAAAATATAAGCTACACGATCCTCCTCACACAAGCTGTC
AAGTATCCGCAACTAATATCGGACATCAGCCACTAATAGGACATTCAAGACCAGCAACCGAAACA
TGGTAACC
Found at i:1124259 original size:27 final size:26
Alignment explanation
Indices: 1124227--1124356 Score: 170
Period size: 27 Copynumber: 4.8 Consensus size: 26
1124217 AAATACGACA
* *
1124227 AAAATACCTCCAGAGGGTAAAATGCCT
1 AAAATACC-CCAAAGGGTAAAATGACT
*
1124254 GAAATACCCCCAAAGGGTAAAATGACT
1 AAAATA-CCCCAAAGGGTAAAATGACT
1124281 AAAATACCCCTAAAGGGTAAAATGACT
1 AAAATACCCC-AAAGGGTAAAATGACT
*
1124308 AAAATACCCCCAAAAGGTAAAATGACT
1 AAAATA-CCCCAAAGGGTAAAATGACT
* *
1124335 AAAATACCCCATATGGTAAAAT
1 AAAATACCCCAAAGGGTAAAAT
1124357 AACTGTTATA
Statistics
Matches: 93, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
26 18 0.19
27 69 0.74
28 6 0.06
ACGTcount: A:0.47, C:0.21, G:0.15, T:0.18
Consensus pattern (26 bp):
AAAATACCCCAAAGGGTAAAATGACT
Found at i:1124298 original size:54 final size:53
Alignment explanation
Indices: 1124227--1124356 Score: 188
Period size: 54 Copynumber: 2.4 Consensus size: 53
1124217 AAATACGACA
* * * *
1124227 AAAATACCTCCAGAGGGTAAAATGCCTGAAATACCCCCAAAGGGTAAAATGACT
1 AAAATACC-CCAAAGGGTAAAATGACTAAAATACCCCCAAAAGGTAAAATGACT
1124281 AAAATACCCCTAAAGGGTAAAATGACTAAAATACCCCCAAAAGGTAAAATGACT
1 AAAATACCCC-AAAGGGTAAAATGACTAAAATACCCCCAAAAGGTAAAATGACT
* *
1124335 AAAATACCCCATATGGTAAAAT
1 AAAATACCCCAAAGGGTAAAAT
1124357 AACTGTTATA
Statistics
Matches: 69, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
53 12 0.17
54 57 0.83
ACGTcount: A:0.47, C:0.21, G:0.15, T:0.18
Consensus pattern (53 bp):
AAAATACCCCAAAGGGTAAAATGACTAAAATACCCCCAAAAGGTAAAATGACT
Found at i:1126499 original size:13 final size:13
Alignment explanation
Indices: 1126481--1126505 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1126471 AATTTGAATT
1126481 ATTTTACTATTTC
1 ATTTTACTATTTC
1126494 ATTTTACTATTT
1 ATTTTACTATTT
1126506 TATTCTTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (13 bp):
ATTTTACTATTTC
Found at i:1132419 original size:20 final size:20
Alignment explanation
Indices: 1132393--1132513 Score: 80
Period size: 20 Copynumber: 6.0 Consensus size: 20
1132383 CAATATTGTG
1132393 GACAAGCCACCAGTATTGCA
1 GACAAGCCACCAGTATTGCA
* * * **
1132413 GATAAGCTATCAGTATTGTG
1 GACAAGCCACCAGTATTGCA
* *
1132433 GACAAGCCACCAATAATGCA
1 GACAAGCCACCAGTATTGCA
* * *** *
1132453 GATAAACTGTCAATATTGCA
1 GACAAGCCACCAGTATTGCA
* **
1132473 GACAAGCTACCAGTATTGTG
1 GACAAGCCACCAGTATTGCA
* *
1132493 GACAAGCCAACAGTAATGCA
1 GACAAGCCACCAGTATTGCA
1132513 G
1 G
1132514 GTAAACTGTA
Statistics
Matches: 71, Mismatches: 30, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
20 71 1.00
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (20 bp):
GACAAGCCACCAGTATTGCA
Found at i:1132441 original size:40 final size:40
Alignment explanation
Indices: 1132381--1132490 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
1132371 TCAATAACAC
*
1132381 ATCAATATTGTGGACAAGCCACCAGTATTGCAGATAAGCT
1 ATCAATATTGTGGACAAGCCACCAGTATTGCAGATAAACT
* * *
1132421 ATCAGTATTGTGGACAAGCCACCAATAATGCAGATAAACT
1 ATCAATATTGTGGACAAGCCACCAGTATTGCAGATAAACT
* ** *
1132461 GTCAATATTGCAGACAAGCTACCAGTATTG
1 ATCAATATTGTGGACAAGCCACCAGTATTG
1132491 TGGACAAGCC
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (40 bp):
ATCAATATTGTGGACAAGCCACCAGTATTGCAGATAAACT
Found at i:1132480 original size:60 final size:59
Alignment explanation
Indices: 1132406--1132574 Score: 230
Period size: 60 Copynumber: 2.8 Consensus size: 59
1132396 AAGCCACCAG
* *
1132406 TATTGCAGATAAGCTATCAGTATTGTGGACAAGCCACCAATAATGCAGATAAACTGTCAA
1 TATTGCAGACAAGCTA-CAGTATTGTGGACAAGCCACCAATAATGCAGATAAACTGTAAA
* * *
1132466 TATTGCAGACAAGCTACCAGTATTGTGGACAAGCCAACAGTAATGCAGGTAAACTGTAAA
1 TATTGCAGACAAGCTA-CAGTATTGTGGACAAGCCACCAATAATGCAGATAAACTGTAAA
* * * *
1132526 TATTGTAAACAAGCTACTAGTATTATTGACAAGCCACCAATAATGCAGA
1 TATTGCAGACAAGCTAC-AGTATTGTGGACAAGCCACCAATAATGCAGA
1132575 CAAGCTACTA
Statistics
Matches: 95, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
59 1 0.01
60 94 0.99
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.24
Consensus pattern (59 bp):
TATTGCAGACAAGCTACAGTATTGTGGACAAGCCACCAATAATGCAGATAAACTGTAAA
Found at i:1148332 original size:52 final size:52
Alignment explanation
Indices: 1148250--1148349 Score: 137
Period size: 52 Copynumber: 1.9 Consensus size: 52
1148240 AATAGTTTCG
* *
1148250 AGTAGGTATTTGCCGATGAAGCATTAAGAAATAATATATGTTTGTGATTTAA
1 AGTAGGTATTTGCCGATGAAGCACTAAGAAATAATATATATTTGTGATTTAA
* ** * *
1148302 AGTAGGTGTTTGTGGATGAAGCACTGAGAAATTATATATATTTGTGAT
1 AGTAGGTATTTGCCGATGAAGCACTAAGAAATAATATATATTTGTGAT
1148350 ATTATTATGA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
52 41 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (52 bp):
AGTAGGTATTTGCCGATGAAGCACTAAGAAATAATATATATTTGTGATTTAA
Found at i:1151894 original size:29 final size:29
Alignment explanation
Indices: 1151861--1151917 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
1151851 CAGATATTTC
*
1151861 TACCATCGATGCTCCGCTAACTTAGGGAA
1 TACCATCGATGCTCCGCCAACTTAGGGAA
1151890 TACCATCGATGCTCCGCCAACTTAGGGA
1 TACCATCGATGCTCCGCCAACTTAGGGA
1151918 TAGAATTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (29 bp):
TACCATCGATGCTCCGCCAACTTAGGGAA
Found at i:1165687 original size:37 final size:37
Alignment explanation
Indices: 1165626--1165704 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
1165616 TTATTACGAA
* * *
1165626 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
1165663 GTCTTACCCGGAGAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
1165700 GTCTT
1 GTCTT
1165705 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:1165941 original size:47 final size:47
Alignment explanation
Indices: 1165872--1166338 Score: 857
Period size: 47 Copynumber: 9.9 Consensus size: 47
1165862 CACTCGGCCC
1165872 TGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
1 TGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
1165919 TGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
1 TGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
1165966 TGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
1 TGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
1166013 TGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
1 TGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
1166060 TGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
1 TGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
1166107 TGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
1 TGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
1166154 TGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA-
1 TGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
*
1166200 T-GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
1 TGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCATCACAT
1166248 TGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
1 TGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
* *
1166295 CGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
1 TGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCAT
1166339 TCAAATATAC
Statistics
Matches: 410, Mismatches: 4, Indels: 10
0.97 0.01 0.02
Matches are distributed among these distances:
45 17 0.04
46 1 0.00
47 352 0.86
48 1 0.00
49 39 0.10
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
TGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
Found at i:1168254 original size:56 final size:56
Alignment explanation
Indices: 1168187--1168306 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
1168177 TATTAGTTTA
1168187 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
1168243 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1168299 TTGCCCAT
1 TTGCCCAT
1168307 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:1178492 original size:40 final size:40
Alignment explanation
Indices: 1178447--1178528 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
1178437 GTAACCCTTC
1178447 TCATTTAACATGAAAGGTTTTGGGTCTCTCCTGTATTGGG
1 TCATTTAACATGAAAGGTTTTGGGTCTCTCCTGTATTGGG
*
1178487 TCATTTAACATGGAAGGTTTTGGGTCTCTCCTGTATTGGG
1 TCATTTAACATGAAAGGTTTTGGGTCTCTCCTGTATTGGG
1178527 TC
1 TC
1178529 CAATTATATA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.18, C:0.16, G:0.26, T:0.40
Consensus pattern (40 bp):
TCATTTAACATGAAAGGTTTTGGGTCTCTCCTGTATTGGG
Found at i:1183832 original size:8 final size:8
Alignment explanation
Indices: 1183819--1183874 Score: 53
Period size: 8 Copynumber: 7.1 Consensus size: 8
1183809 ATTATTCTTC
1183819 TTCTTTTT
1 TTCTTTTT
1183827 TTC--TTT
1 TTCTTTTT
1183833 TTCTTTTT
1 TTCTTTTT
1183841 TTCTTTTT
1 TTCTTTTT
* * *
1183849 ATCGTCTT
1 TTCTTTTT
*
1183857 ATCTTTTT
1 TTCTTTTT
1183865 CTTCTTTTT
1 -TTCTTTTT
1183874 T
1 T
1183875 GTTTTGATTA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
6 6 0.15
8 26 0.67
9 7 0.18
ACGTcount: A:0.04, C:0.16, G:0.02, T:0.79
Consensus pattern (8 bp):
TTCTTTTT
Found at i:1183836 original size:14 final size:14
Alignment explanation
Indices: 1183813--1183848 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
1183803 CTTTTTATTA
*
1183813 TTCTTCTTCTTTTT
1 TTCTTTTTCTTTTT
1183827 TTCTTTTTCTTTTT
1 TTCTTTTTCTTTTT
1183841 TTCTTTTT
1 TTCTTTTT
1183849 ATCGTCTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (14 bp):
TTCTTTTTCTTTTT
Found at i:1183847 original size:22 final size:25
Alignment explanation
Indices: 1183816--1183874 Score: 79
Period size: 22 Copynumber: 2.5 Consensus size: 25
1183806 TTTATTATTC
*
1183816 TTCTTCTTTTTTTC-T-TTTTCTTT
1 TTCTTCTTTTTTTCGTCTTATCTTT
*
1183839 TT-TTCTTTTTATCGTCTTATCTTT
1 TTCTTCTTTTTTTCGTCTTATCTTT
1183863 TTCTTCTTTTTT
1 TTCTTCTTTTTT
1183875 GTTTTGATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 9 0.30
25 8 0.27
ACGTcount: A:0.03, C:0.17, G:0.02, T:0.78
Consensus pattern (25 bp):
TTCTTCTTTTTTTCGTCTTATCTTT
Done.