Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 50 of 144
Found at i:15636147 original size:19 final size:19
Alignment explanation
Indices: 15636123--15636166 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
15636113 AGGATGAGTA
15636123 TTATCACTCTATTCAAAAT
1 TTATCACTCTATTCAAAAT
15636142 TTATCACTCTATTCAAAAT
1 TTATCACTCTATTCAAAAT
15636161 TTATCA
1 TTATCA
15636167 TTCCTAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.36, C:0.20, G:0.00, T:0.43
Consensus pattern (19 bp):
TTATCACTCTATTCAAAAT
Found at i:15638127 original size:104 final size:104
Alignment explanation
Indices: 15638004--15638226 Score: 446
Period size: 104 Copynumber: 2.1 Consensus size: 104
15637994 CGTGTCATAT
15638004 CCAATACGTTAGGACACAACACATTGAATTCCCGATGACAAGTTTTATTTTGTTTGATTAAAGAA
1 CCAATACGTTAGGACACAACACATTGAATTCCCGATGACAAGTTTTATTTTGTTTGATTAAAGAA
15638069 CAATCCTCGATTGTTAGATTTTACGAAGAAAATCGAAAC
66 CAATCCTCGATTGTTAGATTTTACGAAGAAAATCGAAAC
15638108 CCAATACGTTAGGACACAACACATTGAATTCCCGATGACAAGTTTTATTTTGTTTGATTAAAGAA
1 CCAATACGTTAGGACACAACACATTGAATTCCCGATGACAAGTTTTATTTTGTTTGATTAAAGAA
15638173 CAATCCTCGATTGTTAGATTTTACGAAGAAAATCGAAAC
66 CAATCCTCGATTGTTAGATTTTACGAAGAAAATCGAAAC
15638212 CCAATACGTTAGGAC
1 CCAATACGTTAGGAC
15638227 TCAATTTTCT
Statistics
Matches: 119, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
104 119 1.00
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (104 bp):
CCAATACGTTAGGACACAACACATTGAATTCCCGATGACAAGTTTTATTTTGTTTGATTAAAGAA
CAATCCTCGATTGTTAGATTTTACGAAGAAAATCGAAAC
Found at i:15638575 original size:27 final size:26
Alignment explanation
Indices: 15638541--15638649 Score: 91
Period size: 26 Copynumber: 4.1 Consensus size: 26
15638531 AAAAGGGTAC
15638541 AAAAT-ATATACATGTACATATATAAA
1 AAAATAATATACAT-TACATATATAAA
* *
15638567 AAAATTATATACATATATATAGATTATAAA
1 AAAATAATATACAT-TACAT--A-TATAAA
*
15638597 AAAGATAAT-TACA-TATATATATAAA
1 AAA-ATAATATACATTACATATATAAA
*
15638622 AAAATAATAATA-ATTACATATATTAA
1 AAAATAAT-ATACATTACATATATAAA
15638648 AA
1 AA
15638650 TTAATTAATT
Statistics
Matches: 70, Mismatches: 5, Indels: 16
0.77 0.05 0.18
Matches are distributed among these distances:
24 5 0.07
25 10 0.14
26 20 0.29
27 12 0.17
28 5 0.07
29 1 0.01
30 13 0.19
31 4 0.06
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.33
Consensus pattern (26 bp):
AAAATAATATACATTACATATATAAA
Found at i:15638597 original size:30 final size:30
Alignment explanation
Indices: 15638561--15638617 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
15638551 CATGTACATA
*
15638561 TATAAAAAA-ATTATATACATATATATAGAT
1 TATAAAAAAGATAAT-TACATATATATAGAT
15638591 TATAAAAAAGATAATTACATATATATA
1 TATAAAAAAGATAATTACATATATATA
15638618 TAAAAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.35
Consensus pattern (30 bp):
TATAAAAAAGATAATTACATATATATAGAT
Found at i:15638803 original size:17 final size:17
Alignment explanation
Indices: 15638781--15638824 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
15638771 TAGGAAATAA
15638781 AAAATGTATATGTATAT
1 AAAATGTATATGTATAT
*
15638798 AAAATGTAAATGTATAT
1 AAAATGTATATGTATAT
*
15638815 -ATATGTATAT
1 AAAATGTATAT
15638825 AAAAGTTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 8 0.33
17 16 0.67
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (17 bp):
AAAATGTATATGTATAT
Found at i:15638956 original size:3 final size:3
Alignment explanation
Indices: 15638948--15638983 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
15638938 GTATATATAG
15638948 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
15638984 CTTAATAACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:15639350 original size:19 final size:20
Alignment explanation
Indices: 15639326--15639373 Score: 80
Period size: 21 Copynumber: 2.4 Consensus size: 20
15639316 AATCATATGT
15639326 TCTAAGATTGC-ATATCATA
1 TCTAAGATTGCAATATCATA
15639345 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCA-ATATCATA
15639366 TCTAAGAT
1 TCTAAGAT
15639374 CATATCTAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 11 0.41
21 16 0.59
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.38
Consensus pattern (20 bp):
TCTAAGATTGCAATATCATA
Found at i:15639393 original size:14 final size:12
Alignment explanation
Indices: 15639360--15639385 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
15639350 GATTGCATAT
15639360 ATCATATCTAAG
1 ATCATATCTAAG
15639372 ATCATATCTAAG
1 ATCATATCTAAG
15639384 AT
1 AT
15639386 TACATATCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (12 bp):
ATCATATCTAAG
Found at i:15640231 original size:44 final size:44
Alignment explanation
Indices: 15640173--15640338 Score: 171
Period size: 44 Copynumber: 3.8 Consensus size: 44
15640163 ATCTGCTATT
*
15640173 TTCAACCTACTCCACTGCTG-CTCAGGGAGATAGGACCTACAATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGGA-CTACAATC
* * *
15640217 TTCAATCTATTCCACTGCTG-CCCAGGGAGATAGAATTCT-CAATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGGA--CTACAATC
* * * * *
15640261 TTTAACTTATTCCACTGCTGAC-CAGAGAGATATGATTCACAATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGGACT-ACAATC
*
15640305 TTTAACCTATTCCACTGCTGACT-AGGGAGATAGG
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGG
15640339 GTTGGGGTCA
Statistics
Matches: 102, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
42 1 0.01
44 98 0.96
45 3 0.03
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (44 bp):
TTCAACCTATTCCACTGCTGACTCAGGGAGATAGGACTACAATC
Found at i:15640397 original size:88 final size:88
Alignment explanation
Indices: 15640349--15640655 Score: 497
Period size: 88 Copynumber: 3.5 Consensus size: 88
15640339 GTTGGGGTCA
* * * *
15640349 TCGATCTGCTTTGCTGTCGGTGCAGGAAGGCAAGGTCTGCTATTTTTAACCTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTACTATTTTTAACCTGCCCCGCTGCAAC
* * *
15640414 CTAAGGAGGCAAGGCTAGTGTCT
66 CCAGGGAGGCAAGGCTGGTGTCT
* * **
15640437 TCGATCTACTTCGCTGTCGGTGTAGGAAGGCAAGATCTACTATTTTTAGTCTGCCCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTACTATTTTTAACCTGCCCCGCTGCAAC
15640502 CCAGGGAGGCAAGGCTGGTGTCT
66 CCAGGGAGGCAAGGCTGGTGTCT
*
15640525 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTACTATTTTTAATCTGCCCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTACTATTTTTAACCTGCCCCGCTGCAAC
15640590 CCAGGGAGGCAAGGCTGGTGTCT
66 CCAGGGAGGCAAGGCTGGTGTCT
*
15640613 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTAT
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTACTAT
15640656 CTTCGATCTA
Statistics
Matches: 204, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 204 1.00
ACGTcount: A:0.19, C:0.25, G:0.29, T:0.27
Consensus pattern (88 bp):
TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTACTATTTTTAACCTGCCCCGCTGCAAC
CCAGGGAGGCAAGGCTGGTGTCT
Found at i:15640644 original size:44 final size:45
Alignment explanation
Indices: 15640349--15640669 Score: 151
Period size: 44 Copynumber: 7.3 Consensus size: 45
15640339 GTTGGGGTCA
* *
15640349 TCGATCTGCTTTGCTGTCGGTGCAGGAAGGCAAG-GTCTGCTATTT
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGAG-CTGCTATCT
** * * ** * *
15640394 TTAACCTGCTCCGCTG-CAACCT-AAGG-AGGCAAG-GCTAG-TGTCT
1 TCGATCTGCTTCGCTGTC--GGTGCAGGAAGGCAAGAGCT-GCTATCT
* * * *
15640437 TCGATCTACTTCGCTGTCGGTGTAGGAAGGCAAGATCTACTAT-T
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGAGCTGCTATCT
** ** **** * * *
15640481 TTTAGTCTGCCCCGCTG-CAACCCAGGGAGGCAAG-GCTGGTGTCT
1 TCGA-TCTGCTTCGCTGTCGGTGCAGGAAGGCAAGAGCTGCTATCT
* * *
15640525 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTACTATTT
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGAGCTGCTATCT
** ** **** * * *
15640570 TTAATCTGCCCCGCTG-CAACCCAGGGAGGCAAG-GCTGGTGTCT
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGAGCTGCTATCT
*
15640613 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATCT
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGAGCTGCTATCT
*
15640658 TCGATCTACTTC
1 TCGATCTGCTTC
15640670 ACACCAATAC
Statistics
Matches: 185, Mismatches: 77, Indels: 28
0.64 0.27 0.10
Matches are distributed among these distances:
42 1 0.01
43 50 0.27
44 71 0.38
45 62 0.34
46 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.28, T:0.28
Consensus pattern (45 bp):
TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGAGCTGCTATCT
Found at i:15640703 original size:44 final size:44
Alignment explanation
Indices: 15640635--15641188 Score: 460
Period size: 44 Copynumber: 12.6 Consensus size: 44
15640625 GCTGTCGGTG
*
15640635 CAGGAAGGCAAGATCTGCTATCTTCGATCTACTTCACACCAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATA
* * * * * **
15640679 CATGAAGATAAGATCTACTTTCTTCGATCTACTTCGCCACCAGCA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACCAATA
** * *
15640724 TGGGAAGACAAGATCTAC-ATCTTCGATCCACTTC-CTACCAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATA
* * *
15640767 TAGGAAGAC-AGAACCTGCTATCTTCGATCTACTTCACACTAATA
1 CAGGAAGACAAG-ATCTGCTATCTTCGATCTACTTCACACCAATA
* * * * *
15640811 CATGAATACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACCAATA
** * * *
15640856 TGGGAAGGCAAGATCTGC-ATCTTCGATCCACTTCGCTACCAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATA
* * * *
15640900 TAGGAAGACATGATCTGCTATATTCGATCTACTTCACGCCAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATA
* * * * * *
15640944 CATGAAGACAAGCTCTGTTTTCTTCGATCTACTCCGCCACCAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACCAATA
** * *
15640989 TGGGAAGACAAGATCTGC-ATCTTTGATCCACTTC-CTACCAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATA
* * * *
15641032 TAGGAAGACATGATCTGCTATATTCGATCTACTTCACGCCAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATA
* * * * * *
15641076 CATGAAGACAAGCTCTGTTTTCTTCGATCTACTCCGCCACCAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACCAATA
** * *
15641121 TGGGAAGACAAGATCTGC-ATCTTTGATCCACTTC-CTACCAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATA
* *
15641164 TAGGAAGACAATA-CTTGCTATCTTC
1 CAGGAAGACAAGATC-TGCTATCTTC
15641189 ACTGATCTGC
Statistics
Matches: 401, Mismatches: 92, Indels: 34
0.76 0.17 0.06
Matches are distributed among these distances:
42 6 0.01
43 62 0.15
44 235 0.59
45 98 0.24
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (44 bp):
CAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATA
Found at i:15640795 original size:132 final size:132
Alignment explanation
Indices: 15640649--15641188 Score: 823
Period size: 132 Copynumber: 4.1 Consensus size: 132
15640639 AAGGCAAGAT
* * *
15640649 CTGCTATCTTCGATCTACTTCACACCAATACATGAAGATAAGATCTACTTTCTTCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCC
** *
15640714 GCCACCAGCATGGGAAGACAAGATCTACATCTTCGATCCACTTCCTACCAATATAGGAAGACA-G
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACATG
15640778 AAC
131 -AC
* * *
15640781 CTGCTATCTTCGATCTACTTCACACTAATACATGAATACAAGATCTGCTTTCTTCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCC
* *
15640846 GCCACCAGTATGGGAAGGCAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAGGAAGACAT
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC-CTACCAATATAGGAAGACAT
*
15640911 GAT
130 GAC
* * * *
15640914 CTGCTATATTCGATCTACTTCACGCCAATACATGAAGACAAGCTCTGTTTTCTTCGATCTACTCC
1 CTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCC
*
15640979 GCCACCAATATGGGAAGACAAGATCTGCATCTTTGATCCACTTCCTACCAATATAGGAAGACATG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACATG
*
15641044 AT
131 AC
* * * *
15641046 CTGCTATATTCGATCTACTTCACGCCAATACATGAAGACAAGCTCTGTTTTCTTCGATCTACTCC
1 CTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCC
*
15641111 GCCACCAATATGGGAAGACAAGATCTGCATCTTTGATCCACTTCCTACCAATATAGGAAGACAAT
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGAC-AT
15641176 -AC
130 GAC
*
15641178 TTGCTATCTTC
1 CTGCTATCTTC
15641189 ACTGATCTGC
Statistics
Matches: 384, Mismatches: 21, Indels: 6
0.93 0.05 0.01
Matches are distributed among these distances:
132 262 0.68
133 121 0.32
134 1 0.00
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.29
Consensus pattern (132 bp):
CTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCC
GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACATG
AC
Found at i:15640881 original size:265 final size:265
Alignment explanation
Indices: 15640635--15641174 Score: 823
Period size: 265 Copynumber: 2.0 Consensus size: 265
15640625 GCTGTCGGTG
* * *
15640635 CAGGAAGGCAAGATCTGCTATCTTCGATCTACTTCACACCAATACATGAAGATAAGATCTACTTT
1 CAGGAAGACAAGATCTGCTATATTCGATCTACTTCACACCAATACATGAAGACAAGATCTACTTT
* *
15640700 CTTCGATCTACTTCGCCACCAGCATGGGAAGACAAGATCTACATCTTCGATCCACTTCCTACCAA
66 CTTCGATCTACTCCGCCACCAACATGGGAAGACAAGATCTACATCTTCGATCCACTTCCTACCAA
* * *
15640765 TATAGGAAGACA-GAACCTGCTATCTTCGATCTACTTCACACTAATACATGAATACAAGATCTGC
131 TATAGGAAGACATG-ACCTGCTATATTCGATCTACTTCACACCAATACATGAAGACAAGATCTGC
* * *
15640829 TTTCTTCGATCTACTTCGCCACCAGTATGGGAAGGCAAGATCTGCATCTTCGATCCACTTCGCTA
195 TTTCTTCGATCTACTCCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTA
15640894 CCAATA
260 CCAATA
* * * * **
15640900 TAGGAAGACATGATCTGCTATATTCGATCTACTTCACGCCAATACATGAAGACAAGCTCTGTTTT
1 CAGGAAGACAAGATCTGCTATATTCGATCTACTTCACACCAATACATGAAGACAAGATCTACTTT
* * *
15640965 CTTCGATCTACTCCGCCACCAATATGGGAAGACAAGATCTGCATCTTTGATCCACTTCCTACCAA
66 CTTCGATCTACTCCGCCACCAACATGGGAAGACAAGATCTACATCTTCGATCCACTTCCTACCAA
* * * *
15641030 TATAGGAAGACATGATCTGCTATATTCGATCTACTTCACGCCAATACATGAAGACAAGCTCTGTT
131 TATAGGAAGACATGACCTGCTATATTCGATCTACTTCACACCAATACATGAAGACAAGATCTGCT
*
15641095 TTCTTCGATCTACTCCGCCACCAATATGGGAAGACAAGATCTGCATCTTTGATCCACTTC-CTAC
196 TTCTTCGATCTACTCCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTAC
15641159 CAATA
261 CAATA
*
15641164 TAGGAAGACAA
1 CAGGAAGACAA
15641175 TACTTGCTAT
Statistics
Matches: 248, Mismatches: 26, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
264 19 0.08
265 228 0.92
266 1 0.00
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (265 bp):
CAGGAAGACAAGATCTGCTATATTCGATCTACTTCACACCAATACATGAAGACAAGATCTACTTT
CTTCGATCTACTCCGCCACCAACATGGGAAGACAAGATCTACATCTTCGATCCACTTCCTACCAA
TATAGGAAGACATGACCTGCTATATTCGATCTACTTCACACCAATACATGAAGACAAGATCTGCT
TTCTTCGATCTACTCCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTAC
CAATA
Found at i:15645142 original size:32 final size:32
Alignment explanation
Indices: 15645106--15645204 Score: 80
Period size: 32 Copynumber: 3.2 Consensus size: 32
15645096 GGTACAAAAT
* *
15645106 ATATACATGTACA-TATAAAAAAAATTATATAC
1 ATATACATATACATTATAAAAAAAATAAT-TAC
* * *
15645138 ATATATATATAGATTATAAAAAAGATAATTAC
1 ATATACATATACATTATAAAAAAAATAATTAC
* * *
15645170 ATATATATATA-A--ACAAATAATAATAATTAC
1 ATATACATATACATTATAAA-AAAAATAATTAC
15645200 ATATA
1 ATATA
15645205 TTAAAATTAA
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
29 4 0.07
30 15 0.26
31 1 0.02
32 24 0.42
33 13 0.23
ACGTcount: A:0.58, C:0.06, G:0.03, T:0.33
Consensus pattern (32 bp):
ATATACATATACATTATAAAAAAAATAATTAC
Found at i:15645365 original size:17 final size:17
Alignment explanation
Indices: 15645343--15645386 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
15645333 TAGGAAATAA
15645343 AAAATGTATATGTATAT
1 AAAATGTATATGTATAT
*
15645360 AAAATGTAAATGTATAT
1 AAAATGTATATGTATAT
*
15645377 -ATATGTATAT
1 AAAATGTATAT
15645387 AAAAGTTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 8 0.33
17 16 0.67
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (17 bp):
AAAATGTATATGTATAT
Found at i:15645520 original size:3 final size:3
Alignment explanation
Indices: 15645512--15645547 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
15645502 GTATATATAG
*
15645512 TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
15645548 CTTAATAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:15645590 original size:7 final size:7
Alignment explanation
Indices: 15645571--15645600 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
15645561 AAATCAAATT
15645571 TAATAAA
1 TAATAAA
15645578 -AATAAA
1 TAATAAA
15645584 TAATAAA
1 TAATAAA
15645591 TAATAAA
1 TAATAAA
15645598 TAA
1 TAA
15645601 AAAAAGACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
TAATAAA
Found at i:15645902 original size:23 final size:22
Alignment explanation
Indices: 15645859--15645916 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
15645849 AAAGGGTATC
* *
15645859 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
15645880 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
15645903 TGCATATCATATCT
1 TACAAATCATATCT
15645917 AAGATCATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:15645925 original size:12 final size:12
Alignment explanation
Indices: 15645908--15645933 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
15645898 AAGATTGCAT
15645908 ATCATATCTAAG
1 ATCATATCTAAG
15645920 ATCATATCTAAG
1 ATCATATCTAAG
15645932 AT
1 AT
15645934 TGCATATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (12 bp):
ATCATATCTAAG
Found at i:15646314 original size:10 final size:10
Alignment explanation
Indices: 15646301--15646325 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
15646291 TAATTTCATT
15646301 TAATTTTGTA
1 TAATTTTGTA
15646311 TAATTTTGTA
1 TAATTTTGTA
15646321 TAATT
1 TAATT
15646326 ATTTAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (10 bp):
TAATTTTGTA
Found at i:15646440 original size:18 final size:19
Alignment explanation
Indices: 15646399--15646442 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
15646389 TATTTTAGAA
15646399 TATATTTTTATTAATTTTC
1 TATATTTTTATTAATTTTC
*
15646418 AATATTTTTA-TAA-TTTC
1 TATATTTTTATTAATTTTC
15646435 TTATATTT
1 -TATATTT
15646443 CTTAATAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 4 0.18
18 9 0.41
19 9 0.41
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.66
Consensus pattern (19 bp):
TATATTTTTATTAATTTTC
Found at i:15649803 original size:3 final size:3
Alignment explanation
Indices: 15649795--15649820 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
15649785 TAATTAAGTT
15649795 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
15649821 TTATTATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:15654604 original size:167 final size:167
Alignment explanation
Indices: 15654328--15654662 Score: 625
Period size: 167 Copynumber: 2.0 Consensus size: 167
15654318 TTTTGTCATG
*
15654328 AATTGGAGATTCTGATGTGTAAATTCTGGTGGAGGAATTCTAAAACAAATAAAGGGATTCACTGG
1 AATTGGAGATTCTGATGTGTAAATTCTGGTAGAGGAATTCTAAAACAAATAAAGGGATTCACTGG
15654393 TGTAAATGGAAGGAGTTATGCAGTGCCAAAGCAAAGAGAGGATTAGGATTTAAAGATCTATCAAA
66 TGTAAATGGAAGGAGTTATGCAGTGCCAAAGCAAAGAGAGGATTAGGATTTAAAGATCTATCAAA
*
15654458 ATTTAATTTGGCCCTGTTAGCGAAGCAGGGGTGGAAA
131 ATTTAATTTGGCCCTGTTAGCGAAGCAGGGGTAGAAA
15654495 AATTGGAGATTCTGATGTGTAAATTCTGGTAGAGGAATTCTAAAACAAATAAAGGGATTCACTGG
1 AATTGGAGATTCTGATGTGTAAATTCTGGTAGAGGAATTCTAAAACAAATAAAGGGATTCACTGG
* * *
15654560 TGTAAATGGAAGGAGTTATGTAGTGCCAAAGCAAAGGGAGGATTAGGATTTAAAGATCTGTCAAA
66 TGTAAATGGAAGGAGTTATGCAGTGCCAAAGCAAAGAGAGGATTAGGATTTAAAGATCTATCAAA
15654625 ATTTAATTTGGCCCTGTTAGCGAAGCAGGGGTAGAAA
131 ATTTAATTTGGCCCTGTTAGCGAAGCAGGGGTAGAAA
15654662 A
1 A
15654663 TTATTATGCA
Statistics
Matches: 163, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
167 163 1.00
ACGTcount: A:0.36, C:0.10, G:0.27, T:0.27
Consensus pattern (167 bp):
AATTGGAGATTCTGATGTGTAAATTCTGGTAGAGGAATTCTAAAACAAATAAAGGGATTCACTGG
TGTAAATGGAAGGAGTTATGCAGTGCCAAAGCAAAGAGAGGATTAGGATTTAAAGATCTATCAAA
ATTTAATTTGGCCCTGTTAGCGAAGCAGGGGTAGAAA
Found at i:15666308 original size:42 final size:42
Alignment explanation
Indices: 15666249--15666344 Score: 165
Period size: 42 Copynumber: 2.3 Consensus size: 42
15666239 TTTTTTTACT
* *
15666249 TTGAACCCTGAATATTGAACCTTAAACTCCAAACCTTGAACA
1 TTGAATCCTGAATATTGAACCTTAAACTCCAAACCTTAAACA
15666291 TTGAATCCTGAATATTGAACCTTAAACTCCAAACCTTAAACA
1 TTGAATCCTGAATATTGAACCTTAAACTCCAAACCTTAAACA
*
15666333 TTGAATCTTGAA
1 TTGAATCCTGAA
15666345 CCTTGACTTT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.29
Consensus pattern (42 bp):
TTGAATCCTGAATATTGAACCTTAAACTCCAAACCTTAAACA
Found at i:15672701 original size:92 final size:93
Alignment explanation
Indices: 15672490--15672720 Score: 265
Period size: 92 Copynumber: 2.5 Consensus size: 93
15672480 TGCTTGAGAC
* * * * *
15672490 CCATCCAAA-AACAATCAGAAAGCACATAATTACTAAGCCCAAAGGTATCATATCACGACCCTCC
1 CCATCCAAACAA-AATCAGAAAGCACATAAGTGCTAAGCTCAAAAGCATCATATCACGACCCTCC
* *
15672554 AAACAGAACCATATTGCACATAAGTGCAT
65 AAACACAACCATATTACACATAAGTGCAT
* * * * *
15672583 CCACCCAAACACAATCA-AAGAACACATAAGTGCTAAGCTCGAAAGCATCATATCAC-ATCCTTC
1 CCATCCAAACAAAATCAGAA-AGCACATAAGTGCTAAGCTCAAAAGCATCATATCACGA-CCCTC
*
15672646 C-AACACAACCATATTATACATGAA-TGCAT
64 CAAACACAACCATATTACACAT-AAGTGCAT
*
15672675 CCATCCAAACAAAACCAGAAAGCACATAAGTGCTAAGCTCAAAAGC
1 CCATCCAAACAAAATCAGAAAGCACATAAGTGCTAAGCTCAAAAGC
15672721 TACAAAGAAG
Statistics
Matches: 115, Mismatches: 18, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
92 63 0.55
93 51 0.44
94 1 0.01
ACGTcount: A:0.44, C:0.29, G:0.10, T:0.17
Consensus pattern (93 bp):
CCATCCAAACAAAATCAGAAAGCACATAAGTGCTAAGCTCAAAAGCATCATATCACGACCCTCCA
AACACAACCATATTACACATAAGTGCAT
Found at i:15674539 original size:16 final size:16
Alignment explanation
Indices: 15674518--15674548 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
15674508 ATCAAAATCT
15674518 CATAGATACTCGGGGC
1 CATAGATACTCGGGGC
15674534 CATAGATACTCGGGG
1 CATAGATACTCGGGG
15674549 AAAAAGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.23, G:0.32, T:0.19
Consensus pattern (16 bp):
CATAGATACTCGGGGC
Found at i:15674927 original size:33 final size:33
Alignment explanation
Indices: 15674890--15674979 Score: 135
Period size: 33 Copynumber: 2.7 Consensus size: 33
15674880 TACTCTCTAT
*
15674890 TTGGTGTGCTGGTTGGATTAGCTCTTATGAGCA
1 TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
* *
15674923 TTGGTGTGATGGTCGGTTTAGCTCTTATGAGCA
1 TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
* *
15674956 TTGGTGTGATGGATGGATTGGCTC
1 TTGGTGTGATGGTTGGATTAGCTC
15674980 AAGTGAGCGT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 50 1.00
ACGTcount: A:0.14, C:0.11, G:0.36, T:0.39
Consensus pattern (33 bp):
TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
Found at i:15676462 original size:20 final size:21
Alignment explanation
Indices: 15676437--15676484 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
15676427 AATTTTTTAA
15676437 CTTAAACCATGAACTC-AAAT
1 CTTAAACCATGAACTCTAAAT
* *
15676457 CTTAAAGCTTGAACTCTAAAT
1 CTTAAACCATGAACTCTAAAT
15676478 CTTAAAC
1 CTTAAAC
15676485 TTGACATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.42, C:0.23, G:0.06, T:0.29
Consensus pattern (21 bp):
CTTAAACCATGAACTCTAAAT
Found at i:15688603 original size:16 final size:16
Alignment explanation
Indices: 15688558--15688595 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
15688548 TATATATTCT
*
15688558 TAATAAA-TAAGTATA
1 TAATAAATTAATTATA
15688573 TAATAAATTAATTATA
1 TAATAAATTAATTATA
15688589 T-ATAAAT
1 TAATAAAT
15688596 ATCATTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
TAATAAATTAATTATA
Found at i:15688770 original size:6 final size:6
Alignment explanation
Indices: 15688727--15688775 Score: 53
Period size: 6 Copynumber: 7.8 Consensus size: 6
15688717 CCAAACACAC
* * *
15688727 CAGTGAA CAGTAA TCAGTAA CGGTAG CAGTAA CGGTAA CAGTAA CAGTA
1 CAGT-AA CAGTAA -CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTA
15688776 TTCAACACAC
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
6 25 0.71
7 10 0.29
ACGTcount: A:0.41, C:0.16, G:0.24, T:0.18
Consensus pattern (6 bp):
CAGTAA
Found at i:15688833 original size:45 final size:44
Alignment explanation
Indices: 15688756--15688904 Score: 190
Period size: 45 Copynumber: 3.3 Consensus size: 44
15688746 ACGGTAGCAG
* * * *
15688756 TAACGGTAACAGTAACAGTATTCAACACACAAAGTGCTGAACCTA
1 TAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATC-A
* * * *
15688801 TAACAGTAACGGTAACAGTATTCGACATACAAAGTGCCGAGTCGG
1 TAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATC-A
*
15688846 TAACAGTAACAGTAACAGTATTTGACACACAAAGTGCCGAATCA
1 TAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCA
15688890 GTAACAGTAACAGTA
1 -TAACAGTAACAGTA
15688905 GTCGGCACAT
Statistics
Matches: 89, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
45 89 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (44 bp):
TAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCA
Found at i:15692560 original size:39 final size:39
Alignment explanation
Indices: 15692493--15692652 Score: 115
Period size: 45 Copynumber: 3.8 Consensus size: 39
15692483 TTACTGATCA
* * * *
15692493 GGCAC-TTATGTGCCGACTACTGTTACTGTTATTGATTC
1 GGCACTTTGTGTGTCGAATACTATTACTGTTATTGATTC
*
15692531 GGCACTTTGTGTGTCGAATACTATTACTGTTACTGTTACCGACTC
1 GGCACTTTGTGTGTCGAATACTATTACTGTTA---TT---GATTC
* *
15692576 GGCACTTTGTGTGTCGAATACTGTTACCGTTACTGTTATAGGTTC
1 GGCACTTTGTGTGTCGAATAC---TA---TTACTGTTATTGATTC
* * *
15692621 AGCACTTTGTGTGTTGAATACTGTTACTGTTA
1 GGCACTTTGTGTGTCGAATACTATTACTGTTA
15692653 CCGTTACCGT
Statistics
Matches: 98, Mismatches: 11, Indels: 25
0.73 0.08 0.19
Matches are distributed among these distances:
38 5 0.05
39 31 0.32
42 3 0.03
45 47 0.48
48 3 0.03
51 9 0.09
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.40
Consensus pattern (39 bp):
GGCACTTTGTGTGTCGAATACTATTACTGTTATTGATTC
Found at i:15692578 original size:45 final size:45
Alignment explanation
Indices: 15692510--15692661 Score: 205
Period size: 45 Copynumber: 3.4 Consensus size: 45
15692500 ATGTGCCGAC
** *
15692510 TACTGTTACTGTTATTGATTCGGCACTTTGTGTGTCGAATACTAT
1 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATACTGT
*
15692555 TACTGTTACTGTTACCGACTCGGCACTTTGTGTGTCGAATACTGT
1 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATACTGT
* ** * * *
15692600 TACCGTTACTGTTATAGGTTCAGCACTTTGTGTGTTGAATACTGT
1 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATACTGT
*
15692645 TACTGTTACCGTTACCG
1 TACTGTTACTGTTACCG
15692662 TTACTGCTAC
Statistics
Matches: 92, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 92 1.00
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.41
Consensus pattern (45 bp):
TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATACTGT
Found at i:15692650 original size:6 final size:6
Alignment explanation
Indices: 15692639--15692693 Score: 56
Period size: 6 Copynumber: 8.8 Consensus size: 6
15692629 GTGTGTTGAA
* * * *
15692639 TACTGT TACTGT TACCGT TACCGT TACTGC TACCGT TACTGAT TACTGT
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACTG-T TACTGT
15692688 TCACTG
1 T-ACTG
15692694 GTGTGTTTGG
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
6 31 0.76
7 10 0.24
ACGTcount: A:0.18, C:0.25, G:0.16, T:0.40
Consensus pattern (6 bp):
TACTGT
Found at i:15692666 original size:18 final size:18
Alignment explanation
Indices: 15692643--15692688 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
15692633 GTTGAATACT
15692643 GTTACTGTTACCGTTACC
1 GTTACTGTTACCGTTACC
* *
15692661 GTTACTGCTACCGTTACT
1 GTTACTGTTACCGTTACC
15692679 GATTACTGTT
1 G-TTACTGTT
15692689 CACTGGTGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 17 0.71
19 7 0.29
ACGTcount: A:0.17, C:0.24, G:0.17, T:0.41
Consensus pattern (18 bp):
GTTACTGTTACCGTTACC
Found at i:15705679 original size:6 final size:6
Alignment explanation
Indices: 15705668--15705701 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
15705658 CATCCGAAGA
15705668 TCCATT TCCATT TCCATT TCCATT TCCATT TCCA
1 TCCATT TCCATT TCCATT TCCATT TCCATT TCCA
15705702 ATTAAATATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.18, C:0.35, G:0.00, T:0.47
Consensus pattern (6 bp):
TCCATT
Found at i:15723574 original size:61 final size:59
Alignment explanation
Indices: 15723497--15723609 Score: 158
Period size: 61 Copynumber: 1.9 Consensus size: 59
15723487 CATATCCTCA
* *
15723497 TAATTATATTTATTAATTT-GTAAAAAGAATGAATCATATAATCAATTTCTAATTTAGTGTT
1 TAATTATATTTATTAATTTAATAAAAA-AATCAA-CAT-TAATCAATTTCTAATTTAGTGTT
15723558 TAATTA-ATTTATTTAATTTAATAAAAAAATCAACATTAATCAATTTCTAATT
1 TAATTATATTTA-TTAATTTAATAAAAAAATCAACATTAATCAATTTCTAATT
15723610 ATACAATGTT
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
59 16 0.33
60 8 0.17
61 18 0.38
62 6 0.12
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.45
Consensus pattern (59 bp):
TAATTATATTTATTAATTTAATAAAAAAATCAACATTAATCAATTTCTAATTTAGTGTT
Found at i:15729648 original size:50 final size:50
Alignment explanation
Indices: 15729499--15729690 Score: 287
Period size: 50 Copynumber: 3.8 Consensus size: 50
15729489 GATAATAACA
* ** *
15729499 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * **
15729550 TGCCCATGCCATGTCCCAGACAT-GTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
15729599 TGCCAACGCCATGTTCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
15729649 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
15729691 NATAATAAAA
Statistics
Matches: 127, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
49 30 0.24
50 76 0.60
51 21 0.17
ACGTcount: A:0.20, C:0.31, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:15731203 original size:18 final size:19
Alignment explanation
Indices: 15731182--15731217 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
15731172 TGACGCTTAC
15731182 ACAATTC-ATGAATAGGTT
1 ACAATTCTATGAATAGGTT
15731200 ACAATTCTATGAATAGGT
1 ACAATTCTATGAATAGGT
15731218 GTTGAATGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (19 bp):
ACAATTCTATGAATAGGTT
Found at i:15733912 original size:106 final size:106
Alignment explanation
Indices: 15733727--15733939 Score: 331
Period size: 106 Copynumber: 2.0 Consensus size: 106
15733717 TACAAACATT
* * *
15733727 CAAAATAATTAAGTCCCTATACATGCCATAACCCAAACATGGTTCATCATAAAATACCGAGTTAT
1 CAAAATAACTAAATCCCTATACATGCCATAACCCAAACATGGTTCATCATAAAATACCGAGTCAT
*
15733792 TGTCGTTGATAGTGTGGACGATCTCCTACGTCTTTAAGTTC
66 TGTAGTTGATAGTGTGGACGATCTCCTACGTCTTTAAGTTC
* * *
15733833 CAAAATAACTAAATCCCTATACATGCCATAACTCAAACGTGTTTCGAT-ATAAAATACCGAG-CA
1 CAAAATAACTAAATCCCTATACATGCCATAACCCAAACATGGTTC-ATCATAAAATACCGAGTCA
15733896 GTTGTAGTTGATAGTGTGGACGATCTCCTACGTCTTTAAGTTC
65 -TTGTAGTTGATAGTGTGGACGATCTCCTACGTCTTTAAGTTC
15733939 C
1 C
15733940 CGAAAGTAGA
Statistics
Matches: 98, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
105 1 0.01
106 95 0.97
107 2 0.02
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (106 bp):
CAAAATAACTAAATCCCTATACATGCCATAACCCAAACATGGTTCATCATAAAATACCGAGTCAT
TGTAGTTGATAGTGTGGACGATCTCCTACGTCTTTAAGTTC
Found at i:15734433 original size:25 final size:25
Alignment explanation
Indices: 15734354--15734433 Score: 58
Period size: 25 Copynumber: 3.2 Consensus size: 25
15734344 CTTACATGGG
15734354 ATGTTCTCATATCGGTGCCCATGCC
1 ATGTTCTCATATCGGTGCCCATGCC
* * * **
15734379 ATG-TCCCAGA-CATGGT-CTTACATGGG
1 ATGTTCTCATATC--GGTGC--CCATGCC
15734405 ATGTTCTCATATCGGTGCCCATGCC
1 ATGTTCTCATATCGGTGCCCATGCC
15734430 ATGT
1 ATGT
15734434 CCCAGACATG
Statistics
Matches: 38, Mismatches: 10, Indels: 14
0.61 0.16 0.23
Matches are distributed among these distances:
23 1 0.03
24 6 0.16
25 14 0.37
26 10 0.26
27 6 0.16
28 1 0.03
ACGTcount: A:0.19, C:0.28, G:0.23, T:0.31
Consensus pattern (25 bp):
ATGTTCTCATATCGGTGCCCATGCC
Found at i:15734484 original size:50 final size:50
Alignment explanation
Indices: 15734318--15734561 Score: 317
Period size: 50 Copynumber: 4.8 Consensus size: 50
15734308 GATAATAACA
* **
15734318 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATATCGG
* * **
15734369 TGCCCATGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATATCGG
* * * * ** *
15734420 TGCCCATGCCATGTCCCAGACATGATTTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* *
15734470 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
*
15734520 TGCCAACGTCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
15734562 TTACCCAAAT
Statistics
Matches: 175, Mismatches: 18, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
50 93 0.53
51 82 0.47
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:15736282 original size:35 final size:35
Alignment explanation
Indices: 15736233--15736303 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
15736223 TTTCTAAGTT
**
15736233 TGCAAAGGGTAATGGTGTATTTTTTAGTTTTATCC
1 TGCAAAGGACAATGGTGTATTTTTTAGTTTTATCC
*
15736268 TGCAAAGGACAATGGTTTATTTTTTAGTTTTATCC
1 TGCAAAGGACAATGGTGTATTTTTTAGTTTTATCC
15736303 T
1 T
15736304 AACTGTTGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.24, C:0.10, G:0.20, T:0.46
Consensus pattern (35 bp):
TGCAAAGGACAATGGTGTATTTTTTAGTTTTATCC
Found at i:15741455 original size:21 final size:22
Alignment explanation
Indices: 15741426--15741472 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
15741416 CAGAAGGAGT
*
15741426 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
15741448 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
15741469 GAGT
1 GAGT
15741473 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:15742577 original size:21 final size:21
Alignment explanation
Indices: 15742551--15742593 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
15742541 ATTGACTAAG
15742551 ATAGGTTTAAAGCTTAGTGGT
1 ATAGGTTTAAAGCTTAGTGGT
15742572 ATAGGTTTAAAGCTTAGTGGT
1 ATAGGTTTAAAGCTTAGTGGT
15742593 A
1 A
15742594 CACCAGTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.05, G:0.28, T:0.37
Consensus pattern (21 bp):
ATAGGTTTAAAGCTTAGTGGT
Found at i:15751974 original size:24 final size:24
Alignment explanation
Indices: 15751942--15751989 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
15751932 AGGTAGGGGA
15751942 GAAACTACTTAAAGAGATGAACCT
1 GAAACTACTTAAAGAGATGAACCT
15751966 GAAACTACTTAAAGAGATGAACCT
1 GAAACTACTTAAAGAGATGAACCT
15751990 TTCAACGTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.17, G:0.17, T:0.21
Consensus pattern (24 bp):
GAAACTACTTAAAGAGATGAACCT
Found at i:15752968 original size:19 final size:18
Alignment explanation
Indices: 15752946--15752989 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
15752936 TTCGTTTTCC
*
15752946 CTTTTTTTTCATTTTTTAT
1 CTTTTTTTT-ATTTATTAT
15752965 CTTTTTGTTTATTTATTAT
1 CTTTTT-TTTATTTATTAT
15752984 -TTTTTT
1 CTTTTTT
15752990 ATAAATCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 1 0.04
18 5 0.22
19 14 0.61
20 3 0.13
ACGTcount: A:0.11, C:0.07, G:0.02, T:0.80
Consensus pattern (18 bp):
CTTTTTTTTATTTATTAT
Found at i:15754578 original size:107 final size:107
Alignment explanation
Indices: 15754426--15754743 Score: 510
Period size: 107 Copynumber: 3.0 Consensus size: 107
15754416 AATTTTTTCT
* * *
15754426 AAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGCGCCCTAACGTGCTGGGTTTCGATT
1 AAATAAGGCAATACTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTTTCGATT
15754491 TCTCGTTCGACCAAATAGCCAAATATCCTTTTTAAACTTTTA
66 TCTCGTTCGACCAAATAGCCAAATATCCTTTTTAAACTTTTA
* * * * *
15754533 AAATCAGGCAATACTTCGCGCTTGGAAAATCGAGGAAACATGCCCTAACGTGTTGGGTTTCGACT
1 AAATAAGGCAATACTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTTTCGATT
*
15754598 TCTCGTTTGACCAAATAGCCAAATATCCTTTTTAAACTTTTA
66 TCTCGTTCGACCAAATAGCCAAATATCCTTTTTAAACTTTTA
* *
15754640 AAATAAGGCAATACTTCGAGTTTGGAAAATCGAGGAAATGTGCCCTAACGTGCTGGGTTTCGATT
1 AAATAAGGCAATACTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTTTCGATT
* * *
15754705 TCTCGTTCGACTAAATAGCCAAATATCCTCTTAAAACTT
66 TCTCGTTCGACCAAATAGCCAAATATCCTTTTTAAACTT
15754744 CAAAGTATGG
Statistics
Matches: 191, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
107 191 1.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (107 bp):
AAATAAGGCAATACTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTTTCGATT
TCTCGTTCGACCAAATAGCCAAATATCCTTTTTAAACTTTTA
Found at i:15756558 original size:21 final size:22
Alignment explanation
Indices: 15756533--15756573 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
15756523 ACAATTTTAG
15756533 TAAATAAAAAAT-ATATAAAAT
1 TAAATAAAAAATAATATAAAAT
*
15756554 TAAATTAAAAATAATATAAA
1 TAAATAAAAAATAATATAAA
15756574 TATGTTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (22 bp):
TAAATAAAAAATAATATAAAAT
Found at i:15759837 original size:88 final size:91
Alignment explanation
Indices: 15759669--15759873 Score: 292
Period size: 88 Copynumber: 2.3 Consensus size: 91
15759659 TTGATTTTAG
* *
15759669 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* *
15759734 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATATTAATTATTTTAAATTATA
15759761 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATG-AATT-TATAT-ATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
15759823 TGTAATAATT-ATTATTTTAAATTATA
66 TGTAAT-ATTAATTATTTTAAATTATA
* * * *
15759849 CAAATTCATAAAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
15759874 GTTATAATTA
Statistics
Matches: 104, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
88 55 0.53
89 8 0.08
90 4 0.04
91 21 0.20
92 16 0.15
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATATTAATTATTTTAAATTATA
Found at i:15759966 original size:59 final size:56
Alignment explanation
Indices: 15759878--15760426 Score: 221
Period size: 54 Copynumber: 9.2 Consensus size: 56
15759868 TTATTAGTTA
* *
15759878 TAATTATTTTAAATTTTATTAA--ATCATATATTTTAATTAAAATATATTTAATAT
1 TAATTATTTAAAATTTTTTTAAGTATCATATATTTTAATTAAAATATATTTAATAT
* * * **
15759932 TAATTATTTCAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATA
1 TAATTATTTAAAATT-T-TTTTA-AGTATCATATATT-TTAATT-A--AAA-T-ATAT-TTAATA
15759997 T
56 T
* * * *
15759998 TAATTA-TTAAGAATTTTATTAA--ATTATATATTTTAATTATAATATATTTAATAA
1 TAATTATTTAA-AATTTTTTTAAGTATCATATATTTTAATTAAAATATATTTAATAT
* * * **
15760052 TAATTATGTT-AATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAAT
1 TAATTAT-TTAAAATT-T-TTTTA-AGTATCATATATT-TTAATT-A--AAA-T-ATAT-TTAAT
15760116 AT
55 AT
* * *
15760118 TGATTA-TTAAGAATTTTATTAA--ATTATATATTTTAATTAAAATATATTTAATAT
1 TAATTATTTAA-AATTTTTTTAAGTATCATATATTTTAATTAAAATATATTTAATAT
* * * **
15760172 TAATTATTTCAAATTTTCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATA
1 TAATTATTT-AAAATTT-TTTTA-AGTATCATATATT-TTAATT-A--AAA-T-ATAT-TTAATA
15760237 T
56 T
* * * *
15760238 TAATTA-TTAAGAATTTTATTAA--ATTATATATTTTAATTATAATATATTTAATAA
1 TAATTATTTAA-AATTTTTTTAAGTATCATATATTTTAATTAAAATATATTTAATAT
* * * **
15760292 TAATTATGTT-AATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAAT
1 TAATTAT-TTAAAATT-T-TTTTA-AGTATCATATATT-TTAATT-A--AAA-T-ATAT-TTAAT
15760356 AT
55 AT
* * * * *
15760358 TAATTA-CTAAGAATTTTATTAA--ATTATATATTTTAATTATAATATATTTAATAA
1 TAATTATTTAA-AATTTTTTTAAGTATCATATATTTTAATTAAAATATATTTAATAT
15760412 TAATTATGTTAAAAT
1 TAATTAT-TTAAAAT
15760427 ATGATTAAAT
Statistics
Matches: 365, Mismatches: 69, Indels: 121
0.66 0.12 0.22
Matches are distributed among these distances:
54 60 0.16
55 30 0.08
56 29 0.08
57 13 0.04
59 41 0.11
60 32 0.09
61 40 0.11
63 14 0.04
64 25 0.07
65 30 0.08
66 51 0.14
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (56 bp):
TAATTATTTAAAATTTTTTTAAGTATCATATATTTTAATTAAAATATATTTAATAT
Found at i:15760013 original size:120 final size:120
Alignment explanation
Indices: 15759889--15760424 Score: 923
Period size: 120 Copynumber: 4.5 Consensus size: 120
15759879 AATTATTTTA
* * * *
15759889 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AAATTATATTT
15759953 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
15760009 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
*
15760074 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* * * *
15760129 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTTTCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AAATTATATTT
15760193 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
15760249 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
* *
15760314 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTACTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
15760369 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAA
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAA
15760425 ATATGATTAA
Statistics
Matches: 393, Mismatches: 20, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
119 2 0.01
120 387 0.98
121 4 0.01
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:15760049 original size:15 final size:15
Alignment explanation
Indices: 15760014--15760065 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
15760004 TTAAGAATTT
*
15760014 TATTAAATTAT-ATA
1 TATTTAATTATAATA
15760028 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
15760042 TATTTAATAATAAT-
1 TATTTAATTATAATA
15760056 TATGTTAATT
1 TAT-TTAATT
15760066 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:15760158 original size:18 final size:17
Alignment explanation
Indices: 15760130--15760164 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
15760120 ATTATTAAGA
*
15760130 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
15760147 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
15760165 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:15760289 original size:15 final size:15
Alignment explanation
Indices: 15760254--15760305 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
15760244 TTAAGAATTT
*
15760254 TATTAAATTAT-ATA
1 TATTTAATTATAATA
15760268 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
15760282 TATTTAATAATAAT-
1 TATTTAATTATAATA
15760296 TATGTTAATT
1 TAT-TTAATT
15760306 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:15760409 original size:15 final size:15
Alignment explanation
Indices: 15760374--15760415 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
15760364 CTAAGAATTT
*
15760374 TATTAAATTAT-ATA
1 TATTTAATTATAATA
15760388 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
15760402 TATTTAATAATAAT
1 TATTTAATTATAAT
15760416 TATGTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:15760557 original size:39 final size:39
Alignment explanation
Indices: 15760514--15760616 Score: 102
Period size: 45 Copynumber: 2.5 Consensus size: 39
15760504 CAAATTTATG
15760514 CTATTACACTTCTATTCCATTCAACCAAACA-TAATATTA
1 CTATTACACTTCTATTCCATTCAACCAAACAGTAAT-TTA
*
15760553 CTATTAC-GTCTCTATTCCATTACATTCAACCAAACAGTTAATTTA
1 CTATTACACT-TCTATT-C----CATTCAACCAAACAG-TAATTTA
*
15760598 CTATTACACCTCTATTCCA
1 CTATTACACTTCTATTCCA
15760617 ATACACCTCT
Statistics
Matches: 52, Mismatches: 3, Indels: 17
0.72 0.04 0.24
Matches are distributed among these distances:
38 1 0.02
39 13 0.25
40 3 0.06
44 15 0.29
45 16 0.31
46 4 0.08
ACGTcount: A:0.34, C:0.27, G:0.02, T:0.37
Consensus pattern (39 bp):
CTATTACACTTCTATTCCATTCAACCAAACAGTAATTTA
Found at i:15760611 original size:45 final size:44
Alignment explanation
Indices: 15760531--15760621 Score: 130
Period size: 45 Copynumber: 2.0 Consensus size: 44
15760521 ACTTCTATTC
** *
15760531 CATTCAACCAAACATAATATTACTATTACGTCTCTATTCCATTA
1 CATTCAACCAAACATAATATTACTATTACACCTCTATTCCAATA
15760575 CATTCAACCAAACAGTTAAT-TTACTATTACACCTCTATTCCAATA
1 CATTCAACCAAACA--TAATATTACTATTACACCTCTATTCCAATA
15760620 CA
1 CA
15760622 CCTCTAATCC
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
44 14 0.33
45 24 0.57
46 4 0.10
ACGTcount: A:0.37, C:0.26, G:0.02, T:0.34
Consensus pattern (44 bp):
CATTCAACCAAACATAATATTACTATTACACCTCTATTCCAATA
Found at i:15760623 original size:16 final size:16
Alignment explanation
Indices: 15760602--15760637 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
15760592 AATTTACTAT
*
15760602 TACACCTCTATTCCAA
1 TACACCTCTAATCCAA
15760618 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
15760634 TACA
1 TACA
15760638 GCGAACCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.36, C:0.36, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:15765974 original size:29 final size:30
Alignment explanation
Indices: 15765932--15765990 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
15765922 AAAATAGATC
* ** *
15765932 AAATCAAAATTTCATGTGTAAAATTACACA
1 AAATCAAAAGTTCAAATATAAAATTACACA
15765962 AAATC-AAAGTTCAAATATAAAATTACACA
1 AAATCAAAAGTTCAAATATAAAATTACACA
15765991 TTAGATCAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 20 0.80
30 5 0.20
ACGTcount: A:0.54, C:0.14, G:0.05, T:0.27
Consensus pattern (30 bp):
AAATCAAAAGTTCAAATATAAAATTACACA
Found at i:15766398 original size:41 final size:41
Alignment explanation
Indices: 15766353--15766435 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
15766343 AGAATATTTT
15766353 ATGTTGCTCCTTCATAGGTTGATGATTAGTTACAGACAGAC
1 ATGTTGCTCCTTCATAGGTTGATGATTAGTTACAGACAGAC
15766394 ATGTTGCTCCTTCATAGGTTGATGATTAGTTACAGACAGAC
1 ATGTTGCTCCTTCATAGGTTGATGATTAGTTACAGACAGAC
15766435 A
1 A
15766436 AACGCGTTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.34
Consensus pattern (41 bp):
ATGTTGCTCCTTCATAGGTTGATGATTAGTTACAGACAGAC
Found at i:15766849 original size:13 final size:13
Alignment explanation
Indices: 15766833--15766862 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
15766823 AATTTTGAGA
15766833 TTGAATTTAATTT
1 TTGAATTTAATTT
15766846 TTGAATTTAATTT
1 TTGAATTTAATTT
15766859 TTGA
1 TTGA
15766863 CTAATAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.10, T:0.60
Consensus pattern (13 bp):
TTGAATTTAATTT
Found at i:15775545 original size:27 final size:27
Alignment explanation
Indices: 15775484--15775545 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
15775474 GCAACTCATA
15775484 GGCGGCACAAAAGGTGCCATTCCCATG
1 GGCGGCACAAAAGGTGCCATTCCCATG
* * * * *
15775511 TGCAGCACCAATGGTGCCTTTCCCATG
1 GGCGGCACAAAAGGTGCCATTCCCATG
*
15775538 GGTGGCAC
1 GGCGGCAC
15775546 TGCCCATGTA
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (27 bp):
GGCGGCACAAAAGGTGCCATTCCCATG
Found at i:15775613 original size:10 final size:10
Alignment explanation
Indices: 15775598--15775719 Score: 51
Period size: 10 Copynumber: 12.2 Consensus size: 10
15775588 GAAGGAGAGG
15775598 GAAAGAAGAA
1 GAAAGAAGAA
15775608 GAAAG-A-AA
1 GAAAGAAGAA
*
15775616 GAAAGAAAAA
1 GAAAGAAGAA
15775626 GAAAGAA-AA
1 GAAAGAAGAA
* *
15775635 GGAAAGGAGAG
1 -GAAAGAAGAA
*
15775646 GGAAGAAAGAA
1 GAAAG-AAGAA
*
15775657 -AAAGATGGAA
1 GAAAGA-AGAA
*
15775667 -AGGAGAAGAA
1 GA-AAGAAGAA
* *
15775677 CAAAAAAGAAA
1 GAAAGAAG-AA
15775688 GAAA-AAGAA
1 GAAAGAAGAA
15775697 GGAAAGAA-AA
1 -GAAAGAAGAA
*
15775707 GGAAAGGAGAA
1 -GAAAGAAGAA
15775718 GA
1 GA
15775720 GAAAAAAAAA
Statistics
Matches: 87, Mismatches: 13, Indels: 24
0.70 0.10 0.19
Matches are distributed among these distances:
8 7 0.08
9 7 0.08
10 56 0.64
11 17 0.20
ACGTcount: A:0.67, C:0.01, G:0.31, T:0.01
Consensus pattern (10 bp):
GAAAGAAGAA
Found at i:15775639 original size:24 final size:24
Alignment explanation
Indices: 15775599--15775737 Score: 76
Period size: 24 Copynumber: 5.8 Consensus size: 24
15775589 AAGGAGAGGG
15775599 AAAG-AAGAAGAAAGAAAGAAAGAA
1 AAAGAAAGAA-AAAGAAAGAAAGAA
* * *
15775623 AAAGAAAGAAAAGGAAAG-GAGAGG
1 AAAGAAAGAAAAAGAAAGAAAGA-A
* ** *
15775647 GAAGAAAGAAAAAGATGGAAAGGA
1 AAAGAAAGAAAAAGAAAGAAAGAA
*
15775671 GAAGAACA-AAAAAGAAAGAAA-AA
1 AAAGAA-AGAAAAAGAAAGAAAGAA
* *
15775694 GAAGGAAAGAAAAGGAAAGGAGAAG-A
1 -AAAGAAAGAAAAAGAAA-GA-AAGAA
*
15775720 GAA-AAA-AAAAAGAAAGAA
1 AAAGAAAGAAAAAGAAAGAA
15775738 GGAGAAGAGG
Statistics
Matches: 87, Mismatches: 19, Indels: 21
0.69 0.15 0.17
Matches are distributed among these distances:
21 1 0.01
22 2 0.02
23 13 0.15
24 57 0.66
25 11 0.13
26 3 0.03
ACGTcount: A:0.70, C:0.01, G:0.29, T:0.01
Consensus pattern (24 bp):
AAAGAAAGAAAAAGAAAGAAAGAA
Found at i:15775657 original size:34 final size:34
Alignment explanation
Indices: 15775614--15775737 Score: 110
Period size: 34 Copynumber: 3.6 Consensus size: 34
15775604 AGAAGAAAGA
*
15775614 AAGAAAGAAAAAGAAAGAAAAGGAAAGGAGAGGG
1 AAGAAAGAAAAAGAAAGAAAAGGAAAGGAGAGAG
* * * * * *
15775648 AAGAAAGAAAAAG-ATGGAAAGGAGAAGAACAAAA
1 AAGAAAGAAAAAGAAAGAAAAGGA-AAGGAGAGAG
15775682 AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAG
1 AAGAAAG--AAA-AA-GAAAGAAAAGGAAAGGAG-AGAG
15775721 AA-AAA-AAAAAGAAAGAA
1 AAGAAAGAAAAAGAAAGAA
15775738 GGAGAAGAGG
Statistics
Matches: 70, Mismatches: 13, Indels: 15
0.71 0.13 0.15
Matches are distributed among these distances:
33 15 0.21
34 27 0.39
35 3 0.04
36 3 0.04
37 2 0.03
38 8 0.11
39 12 0.17
ACGTcount: A:0.69, C:0.01, G:0.29, T:0.01
Consensus pattern (34 bp):
AAGAAAGAAAAAGAAAGAAAAGGAAAGGAGAGAG
Found at i:15775696 original size:44 final size:43
Alignment explanation
Indices: 15775648--15775734 Score: 115
Period size: 44 Copynumber: 2.0 Consensus size: 43
15775638 AAGGAGAGGG
*
15775648 AAGAAAGAAA-AAGATGGAAAGGAGAAGA-ACAAAAAAGAAAGAAA
1 AAGAAAGAAAGAA-AAGGAAAGGAGAAGAGA-AAAAAA-AAAGAAA
*
15775692 AAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAAAAGAAA
1 AAGAAAGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAAAAGAAA
15775735 GAAGGAGAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
43 7 0.18
44 29 0.74
45 3 0.08
ACGTcount: A:0.71, C:0.01, G:0.26, T:0.01
Consensus pattern (43 bp):
AAGAAAGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAAAAGAAA
Found at i:15775756 original size:26 final size:26
Alignment explanation
Indices: 15775680--15775761 Score: 75
Period size: 26 Copynumber: 3.3 Consensus size: 26
15775670 AGAAGAACAA
*
15775680 AAAAGAAAGAA--A-AAGAAGGAAAG
1 AAAAGAAAGAAGGAGAAGAGGGAAAG
* ** *
15775703 AAAAGG-A-AAGGAGAAGAGAAAAAA
1 AAAAGAAAGAAGGAGAAGAGGGAAAG
15775727 AAAAGAAAGAAGGAGAAGAGGGAAAG
1 AAAAGAAAGAAGGAGAAGAGGGAAAG
*
15775753 AAAAAAAAG
1 AAAAGAAAG
15775762 GTAAATTTTT
Statistics
Matches: 44, Mismatches: 10, Indels: 7
0.72 0.16 0.11
Matches are distributed among these distances:
21 2 0.05
22 1 0.02
23 6 0.14
24 12 0.27
25 1 0.02
26 22 0.50
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (26 bp):
AAAAGAAAGAAGGAGAAGAGGGAAAG
Found at i:15776440 original size:159 final size:158
Alignment explanation
Indices: 15776090--15777465 Score: 1034
Period size: 159 Copynumber: 8.7 Consensus size: 158
15776080 GTATATTTAA
15776090 TAAATTTCAAACATAATGCACTGAAATAATATAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCACTGAAATAATATAAAATTATAAAATTAGAAATTATGATATTTTTT
* * **
15776155 AAAGTAATAAAATACGGAGAAAAAAATACGAACAAATGGCTA--AAGT-AAGTGTTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGG-TAGGAAGTAAAGGGTTTTTTTAACT
*** * * *
15776217 TTTTTAAAAATTAAAAAATA-AGT-AATA-C
130 AAATT--AATTTAAAAAACACAATAAATACC
* * * * * * * *
15776245 AAATATTTCTAATAAAATGTACTAAAATAATATAAAATAATAAAA-TACGAAAATAAT-ATATTT
1 TAA-ATTTCAAACATAATGCACTGAAATAATATAAAATTATAAAATTA-G-AAATTATGATA-TT
* * *
15776308 TTATTGAAAGTAATAAAATTCGG-GAAAATAATACGAGCAAATGGTAGGAA-T-AAGGGTTTTTT
62 TT-TT-AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGTAGGAAGTAAAGGGTTTTTT
* *
15776370 TACACTAAATTAATTTAAAAAACACACTAAATCCC
125 TA-ACTAAATTAATTTAAAAAACACAATAAATACC
*
15776405 TAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCACTGAAATAATATAAAATTATAAAATTAGAAATTATGATATTTTTT
* ** * *
15776470 AAAGTAATAAAATGCGGAGAAAAAAATACAAACAAATGG-CCGAAGTAAAGAG-TGTTTT-ACTA
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGTAGGAAGTAAAGGGTTTTTTTAACTA
* * * **
15776532 ACTT-TTTTAAAAATTCGGA-AATAATTAATAAAA
131 AATTAATTTAAAAA-AC--ACAAT-A--AAT-ACC
* * ** * * *
15776565 AAAATTT-AAACAAAATATACTGAAATAATCTAAAATAATAAAA-TACGAAAATAAT-ATATTTT
1 TAAATTTCAAACATAATGCACTGAAATAATATAAAATTATAAAATTA-G-AAATTATGATA-TTT
* * * * * * * *
15776627 TTTGGAAGTAATAAAATTCAG-GAAAATAATATGAGCAAATGGCAGGAA-TAAAGGTTTCTTATT
63 TTT-AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGTAGGAAGTAAAGGGTT-TT-TT
* * * *
15776690 TACGCTAAATTAATTTTAAAAACACACTAAATCCC
125 TA-ACTAAATTAATTTAAAAAACACAATAAATACC
* *
15776725 TAAATTTCAAACATAATGCGCTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCACTGAAATAATATAAAATTATAAAATTAGAAATTATGATATTTTTT
* * * * *
15776790 AAAATAATAAAATGCGGAGAAAAAAATACAAACAAATGGTCA--AATTAAAGAG-TGTTTT-ACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGT-AGGAAGTAAAGGGTTTTTTTAACT
* ** ** * * *
15776851 AACTTTTTTTAAAATTCGGGAATAATTAATACA
130 AAATTAATTTAAAAAAC----ACAATAAATACC
* * * * * *
15776884 AAAATTTCAAACAAAATGTACTGAAATAATATAAAATAATAAAA-TACGAAAATAAT-ATTTTTT
1 TAAATTTCAAACATAATGCACTGAAATAATATAAAATTATAAAATTA-G-AAATTATGATATTTT
* * ** * * * *
15776947 TTGGAAGTAATAAATTTTGG-GAAAATAATACGAGCAAAGGGCAGGAA-T-AAGGGTTTCTTTTT
64 TT-AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGTAGGAAGTAAAGGG--T-TTTTT
* *
15777009 TACACTAAATTAATTTAAAAAACACATTAAATCCC
125 TA-ACTAAATTAATTTAAAAAACACAATAAATACC
*
15777044 TAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCACTGAAATAATATAAAATTATAAAATTAGAAATTATGATATTTTTT
* * * *
15777109 AAATTAATAAAATGAGGAGAAAAAAATACGAACAAATGGTCA--AAGTAAAGAG-TGTTTT-ACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGT-AGGAAGTAAAGGGTTTTTTTAACT
* * * *
15777170 AACTT-TTTTAAAAATTCGGA-AATAATTAATACA
130 AAATTAATTTAAAAA-AC--ACAAT-A--AATACC
* * * *
15777203 AAAATTTCAAACAAAATGTACTGAAATAATATAAAATAATAAAA-TACGAAAATAATAT-ATATT
1 TAAATTTCAAACATAATGCACTGAAATAATATAAAATTATAAAATTA-G-AAAT--TATGATATT
* * * * * **
15777266 TTTTGGAAGTAATAAAATTCGG-GAAAATAATACGAGCAAAAGACAGGAA-T-AAGGGTTTTTTT
62 TTTT-AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGTAGGAAGTAAAGGGTTTTTTT
* *
15777328 ACACTAAATTAATTTAAAAAACACACTAAATTCC
126 A-ACTAAATTAATTTAAAAAACACAATAAATACC
* *
15777362 TAAATTTCAAACATAATGCACTAAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCACTGAAATAATATAAAATTATAAAATTAGAAATTATGATATTTTTT
* *
15777427 AAAATAATAAAATGCGGAGAAAAAAATTCGAACAAATGG
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGG
15777466 CCGAAGTAAA
Statistics
Matches: 942, Mismatches: 195, Indels: 166
0.72 0.15 0.13
Matches are distributed among these distances:
154 16 0.02
155 33 0.04
156 79 0.08
157 86 0.09
158 64 0.07
159 297 0.32
160 190 0.20
161 97 0.10
162 28 0.03
163 13 0.01
164 25 0.03
165 7 0.01
166 7 0.01
ACGTcount: A:0.50, C:0.08, G:0.11, T:0.31
Consensus pattern (158 bp):
TAAATTTCAAACATAATGCACTGAAATAATATAAAATTATAAAATTAGAAATTATGATATTTTTT
AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGTAGGAAGTAAAGGGTTTTTTTAACTA
AATTAATTTAAAAAACACAATAAATACC
Found at i:15777437 original size:318 final size:317
Alignment explanation
Indices: 15776090--15777496 Score: 2302
Period size: 319 Copynumber: 4.4 Consensus size: 317
15776080 GTATATTTAA
*
15776090 TAAATTTCAAACATAATGCACTGAAATAATATAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
* * *
15776155 AAAGTAATAAAATACGGAGAAAAAAATACGAACAAATGGCTAAAGT--A-AGTGTTTTACTAACT
66 AAAATAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCAAAGTAAAGAGTGTTTTACTAACT
*** * * * * *
15776217 TTTTTAAAAATTAAAAAATAAGTAATACAAATATTTCTAATAAAATGTACTAAAATAATATAAAA
131 TTTTTAAAAATTCGGAAATAATTAATACAAAAATTTCAAACAAAATGTACTGAAATAATATAAAA
*
15776282 TAATAAAATACGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGGAAAATAATACGAGCA
196 TAATAAAATACGAAAATAATATATTTTT-TTGGAAGTAATAAAATTCGGGAAAATAATACGAGCA
*
15776347 AATGGTAGGAATAAGGGTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
260 AATGGCAGGAATAAGGGTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
15776405 TAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
* * *
15776470 AAAGTAATAAAATGCGGAGAAAAAAATACAAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
66 AAAATAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCAAAGTAAAGAGTGTTTTACTAACT
* * *
15776535 TTTTTAAAAATTCGGAAATAATTAATAAAAAAAATTT-AAACAAAATATACTGAAATAATCTAAA
131 TTTTTAAAAATTCGGAAATAATTAAT-ACAAAAATTTCAAACAAAATGTACTGAAATAATATAAA
* *
15776599 ATAATAAAATACGAAAATAATATATTTTTTTGGAAGTAATAAAATTCAGGAAAATAATATGAGCA
195 ATAATAAAATACGAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCA
* * *
15776664 AATGGCAGGAATAAAGGTTTCTTATTTACGCTAAATTAATTTTAAAAACACACTAAATCCC
260 AATGGCAGGAAT-AAGGGTT-TT-TTTACACTAAATTAATTTAAAAAACACACTAAATCCC
*
15776725 TAAATTTCAAACATAATGCGCTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
* * *
15776790 AAAATAATAAAATGCGGAGAAAAAAATACAAACAAATGGTCAAATTAAAGAGTGTTTTACTAACT
66 AAAATAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCAAAGTAAAGAGTGTTTTACTAACT
* *
15776855 TTTTTTAAAATTCGGGAATAATTAATACAAAAATTTCAAACAAAATGTACTGAAATAATATAAAA
131 TTTTTAAAAATTCGGAAATAATTAATACAAAAATTTCAAACAAAATGTACTGAAATAATATAAAA
* *
15776920 TAATAAAATACGAAAATAATAT-TTTTTTTGGAAGTAATAAATTTTGGGAAAATAATACGAGCAA
196 TAATAAAATACGAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
* *
15776984 AGGGCAGGAATAAGGGTTTCTTTTTTACACTAAATTAATTTAAAAAACACATTAAATCCC
261 ATGGCAGGAATAAGGG--T-TTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
15777044 TAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
* * *
15777109 AAATTAATAAAATGAGGAGAAAAAAATACGAACAAATGGTCAAAGTAAAGAGTGTTTTACTAACT
66 AAAATAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCAAAGTAAAGAGTGTTTTACTAACT
15777174 TTTTTAAAAATTCGGAAATAATTAATACAAAAATTTCAAACAAAATGTACTGAAATAATATAAAA
131 TTTTTAAAAATTCGGAAATAATTAATACAAAAATTTCAAACAAAATGTACTGAAATAATATAAAA
15777239 TAATAAAATACGAAAATAATATATATTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCA
196 TAATAAAATACGAAAATAATATAT-TTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCA
* * *
15777304 AAAGACAGGAATAAGGGTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATTCC
260 AATGGCAGGAATAAGGGTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
*
15777362 TAAATTTCAAACATAATGCACTAAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
* *
15777427 AAAATAATAAAATGCGGAGAAAAAAATTCGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
66 AAAATAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCAAAGTAAAGAGTGTTTTACTAACT
15777492 TTTTT
131 TTTTT
15777497 TTCAACTTGT
Statistics
Matches: 1018, Mismatches: 61, Indels: 23
0.92 0.06 0.02
Matches are distributed among these distances:
315 106 0.10
317 45 0.04
318 265 0.26
319 312 0.31
320 236 0.23
321 54 0.05
ACGTcount: A:0.50, C:0.08, G:0.11, T:0.31
Consensus pattern (317 bp):
TAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
AAAATAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCAAAGTAAAGAGTGTTTTACTAACT
TTTTTAAAAATTCGGAAATAATTAATACAAAAATTTCAAACAAAATGTACTGAAATAATATAAAA
TAATAAAATACGAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
ATGGCAGGAATAAGGGTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
Found at i:15782585 original size:40 final size:41
Alignment explanation
Indices: 15782518--15782617 Score: 105
Period size: 42 Copynumber: 2.4 Consensus size: 41
15782508 AATAGTTTTA
* * * *
15782518 TACTCAAAATAATAGTAA-C-TAACAATAATAAATAGGGTTT
1 TACTAAAAATAATACTAACCATAATAATAAT-ACTAGGGTTT
**
15782558 TACTAAAAATAATAACTAACCATAATAATAATACTAGTTTTT
1 TACTAAAAATAAT-ACTAACCATAATAATAATACTAGGGTTT
*
15782600 TACTAACAATAATACTAA
1 TACTAAAAATAATACTAA
15782618 GTAACATCTA
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
40 12 0.24
41 9 0.18
42 20 0.40
43 9 0.18
ACGTcount: A:0.51, C:0.12, G:0.05, T:0.32
Consensus pattern (41 bp):
TACTAAAAATAATACTAACCATAATAATAATACTAGGGTTT
Found at i:15782936 original size:27 final size:27
Alignment explanation
Indices: 15782898--15782965 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
15782888 AACACGAGTG
*
15782898 GTGCTGCCCATGGGAAAGGCACCATCA
1 GTGCCGCCCATGGGAAAGGCACCATCA
* * **
15782925 GTGCCGCCCATGGGAATGGCACCTTTG
1 GTGCCGCCCATGGGAAAGGCACCATCA
*
15782952 GTGCCGCCTATGGG
1 GTGCCGCCCATGGG
15782966 TTACCCTCCT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.18, C:0.29, G:0.34, T:0.19
Consensus pattern (27 bp):
GTGCCGCCCATGGGAAAGGCACCATCA
Found at i:15784601 original size:11 final size:10
Alignment explanation
Indices: 15784576--15784600 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
15784566 TCTGTTACCA
15784576 TTTTTAAAAT
1 TTTTTAAAAT
15784586 TTTTTAAAAT
1 TTTTTAAAAT
15784596 TTTTT
1 TTTTT
15784601 TGTTTAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTTTAAAAT
Found at i:15785251 original size:73 final size:73
Alignment explanation
Indices: 15785170--15785315 Score: 265
Period size: 73 Copynumber: 2.0 Consensus size: 73
15785160 CGTTGGGGGG
* *
15785170 TTCATTTAATATTTTGGACTATAGTTTAATATGCTTAAATATATTTTATCAATATTTTGTATTGT
1 TTCATTTAATATTTTGGACTATAATTTAATATGCTTAAATATATTTTATCAATATTTTGTACTGT
15785235 AATTTAAT
66 AATTTAAT
*
15785243 TTCATTTAATATTTTGGGCTATAATTTAATATGCTTAAATATATTTTATCAATATTTTGTACTGT
1 TTCATTTAATATTTTGGACTATAATTTAATATGCTTAAATATATTTTATCAATATTTTGTACTGT
15785308 AATTTAAT
66 AATTTAAT
15785316 ATACTTAAAT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 70 1.00
ACGTcount: A:0.33, C:0.06, G:0.08, T:0.53
Consensus pattern (73 bp):
TTCATTTAATATTTTGGACTATAATTTAATATGCTTAAATATATTTTATCAATATTTTGTACTGT
AATTTAAT
Found at i:15785341 original size:73 final size:73
Alignment explanation
Indices: 15785185--15785331 Score: 206
Period size: 73 Copynumber: 2.0 Consensus size: 73
15785175 TTAATATTTT
* * * *
15785185 GGACTATAGTTTAATATGCTTAAATATATTTTATCAATATTTTGTATTGTAATTTAATTTCATTT
1 GGACTATAATTTAATATGCTTAAATATATTTTATCAATATTTTGTACTGTAATTTAATTACATTA
***
15785250 AATATTTT
66 AATATACA
*
15785258 GGGCTATAATTTAATATGCTTAAATATATTTTATCAATATTTTGTACTGTAATTTAATATAC-TT
1 GGACTATAATTTAATATGCTTAAATATATTTTATCAATATTTTGTACTGTAATTTAAT-TACATT
15785322 AAATATACA
65 AAATATACA
15785331 G
1 G
15785332 TTACATAATT
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
73 63 0.97
74 2 0.03
ACGTcount: A:0.35, C:0.07, G:0.09, T:0.49
Consensus pattern (73 bp):
GGACTATAATTTAATATGCTTAAATATATTTTATCAATATTTTGTACTGTAATTTAATTACATTA
AATATACA
Found at i:15785973 original size:20 final size:20
Alignment explanation
Indices: 15785948--15785992 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
15785938 AATTATATTT
*
15785948 TAAAATAATAATTTTATAAA
1 TAAAATAATAATCTTATAAA
**
15785968 TAAAATGTTAATCTTATAAA
1 TAAAATAATAATCTTATAAA
15785988 TAAAA
1 TAAAA
15785993 CAATTTAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (20 bp):
TAAAATAATAATCTTATAAA
Found at i:15787145 original size:27 final size:28
Alignment explanation
Indices: 15787114--15787174 Score: 81
Period size: 27 Copynumber: 2.2 Consensus size: 28
15787104 ATTTTTTAAT
15787114 TATTTA-TAATGATAATAATTGAAAAATA
1 TATTTATTAAT-ATAATAATTGAAAAATA
* *
15787142 -ATTTATTAATTTAATAATTTAAAAATA
1 TATTTATTAATATAATAATTGAAAAATA
15787169 TATTTA
1 TATTTA
15787175 CAATTTAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 20 0.69
28 9 0.31
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (28 bp):
TATTTATTAATATAATAATTGAAAAATA
Found at i:15787179 original size:27 final size:27
Alignment explanation
Indices: 15787126--15787182 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
15787116 TTTATAATGA
*
15787126 TAATAATTGAAAAATAATTTATTAATT
1 TAATAATTGAAAAATAATTTATCAATT
*
15787153 TAATAATTTAAAAATATATTTA-CAATT
1 TAATAATTGAAAAATA-ATTTATCAATT
15787180 TAA
1 TAA
15787183 AAAATTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 22 0.81
28 5 0.19
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (27 bp):
TAATAATTGAAAAATAATTTATCAATT
Found at i:15799376 original size:34 final size:35
Alignment explanation
Indices: 15799332--15799398 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
15799322 CAGTAAAATA
*
15799332 TTTTCCGTAAAATGA-TTTCTGGAAAAGATTTTAC
1 TTTTCCGTAAAATGACTTACTGGAAAAGATTTTAC
* *
15799366 TTTTCTGTAAAATGACTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGACTTACTGGAAAAGATTTT
15799399 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 14 0.48
35 15 0.52
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.43
Consensus pattern (35 bp):
TTTTCCGTAAAATGACTTACTGGAAAAGATTTTAC
Found at i:15804174 original size:147 final size:150
Alignment explanation
Indices: 15803985--15804360 Score: 410
Period size: 158 Copynumber: 2.5 Consensus size: 150
15803975 TAGAGGTTAT
* * *
15803985 ATATTCTAATGCTTAATT-TCGTAATTTTTATGCTGAATTATTTGTGATTTAATGGA-TTACTCT
1 ATATCCTAATGCTTAATTAT-GTAATTCTTATGCTGAATTATTTGTGGTTTAATGGATTTACTCT
* *
15804048 TTATTTTCA-TTT-T-TTTCTCGTT-CAATTTAGTTTGATTATAAGCTTATGAAGGAATTAA-AC
65 TTATTTTAATTTTGTGTTTATCGTTGC-ATTTAGTTTGATTATAAGCTTATGAAGGAA-TAAGAC
*
15804108 GATTTCGCAG-TAGCATTTTAGTTG
128 GATTT-G-AGTTAGCATTTTAGGTG
*
15804132 ATATCCTAATGCTTAATTATGTAATTCTTATGCTGAATTATTTGCGGTTTAATGGATTTTACTCT
1 ATATCCTAATGCTTAATTATGTAATTCTTATGCTGAATTATTTGTGGTTTAATGGA-TTTA--CT
** * *
15804197 CTGTTCAATGCTAATTTTTGTGTTTATTGTTGCATTTAGTTTGATTATAAGCTTATGATGGAATA
63 CT-TT--ATTTTAA-TTTTGTGTTTATCGTTGCATTTAGTTTGATTATAAGCTTATGAAGGAATA
* ** *
15804262 AGGGCGATTTGAGTTTTCATTTTGGGTG
124 A-GACGATTTGAGTTAGCATTTTAGGTG
*
15804290 ATATCCTGAA-GCTTAATTATGTAATTCTTATGCTGAATGATTTGTGGTTTAATGGATTTTACTC
1 ATATCCT-AATGCTTAATTATGTAATTCTTATGCTGAATTATTTGTGGTTTAATGGA-TTTACTC
15804354 TTTATTT
64 TTTATTT
15804361 GCAAATTAGG
Statistics
Matches: 193, Mismatches: 19, Indels: 28
0.80 0.08 0.12
Matches are distributed among these distances:
147 50 0.26
148 1 0.01
149 3 0.02
151 4 0.02
152 2 0.01
153 2 0.01
154 4 0.02
155 2 0.01
156 7 0.04
157 6 0.03
158 103 0.53
159 9 0.05
ACGTcount: A:0.25, C:0.10, G:0.17, T:0.48
Consensus pattern (150 bp):
ATATCCTAATGCTTAATTATGTAATTCTTATGCTGAATTATTTGTGGTTTAATGGATTTACTCTT
TATTTTAATTTTGTGTTTATCGTTGCATTTAGTTTGATTATAAGCTTATGAAGGAATAAGACGAT
TTGAGTTAGCATTTTAGGTG
Found at i:15805851 original size:7 final size:7
Alignment explanation
Indices: 15805841--15805901 Score: 50
Period size: 7 Copynumber: 8.7 Consensus size: 7
15805831 CCCTAAATCA
15805841 TAAATAT
1 TAAATAT
*
15805848 TAAATCT
1 TAAATAT
**
15805855 TAAACCT
1 TAAATAT
*
15805862 TAAATAC
1 TAAATAT
*
15805869 TAAATAC
1 TAAATAT
*
15805876 TAAATTT
1 TAAATAT
*
15805883 TAAATTT
1 TAAATAT
*
15805890 TAAATTT
1 TAAATAT
15805897 TAAAT
1 TAAAT
15805902 TCTAATATTA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 47 1.00
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.43
Consensus pattern (7 bp):
TAAATAT
Found at i:15805855 original size:28 final size:28
Alignment explanation
Indices: 15805819--15805886 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
15805809 ATCCTACATC
* *
15805819 CTAAGTCTTATACCCTAAAT-CATAAATA
1 CTAAATCTTAAACCCTAAATAC-TAAATA
* *
15805847 TTAAATCTTAAACCTTAAATACTAAATA
1 CTAAATCTTAAACCCTAAATACTAAATA
*
15805875 CTAAATTTTAAA
1 CTAAATCTTAAA
15805887 TTTTAAATTT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
28 32 0.97
29 1 0.03
ACGTcount: A:0.47, C:0.16, G:0.01, T:0.35
Consensus pattern (28 bp):
CTAAATCTTAAACCCTAAATACTAAATA
Found at i:15805865 original size:21 final size:21
Alignment explanation
Indices: 15805841--15805900 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 21
15805831 CCCTAAATCA
15805841 TAAATATTAAATCTTAAACCT
1 TAAATATTAAATCTTAAACCT
* **
15805862 TAAATACTAAATAC-TAAATTT
1 TAAATATTAAAT-CTTAAACCT
* *
15805883 TAAATTTTAAATTTTAAA
1 TAAATATTAAATCTTAAA
15805901 TTCTAATATT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
21 30 0.97
22 1 0.03
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (21 bp):
TAAATATTAAATCTTAAACCT
Found at i:15805902 original size:7 final size:7
Alignment explanation
Indices: 15805876--15805902 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
15805866 TACTAAATAC
15805876 TAAATTT
1 TAAATTT
15805883 TAAATTT
1 TAAATTT
15805890 TAAATTT
1 TAAATTT
15805897 TAAATT
1 TAAATT
15805903 CTAATATTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
TAAATTT
Found at i:15808021 original size:32 final size:31
Alignment explanation
Indices: 15807979--15808088 Score: 78
Period size: 32 Copynumber: 3.5 Consensus size: 31
15807969 TTGATGGAGT
15807979 AAGAGCAAGCCTGTCAAAGTGCAAGTCTGTTG
1 AAGAGCAAGCCTGTCAAAGTGCAAG-CTGTTG
* *** * * * *
15808011 AAGAGTAAGCC-AAAAAAGTGTAGGCCTATCG
1 AAGAGCAAGCCTGTCAAAGTGCAAG-CTGTTG
** * *
15808042 AAGAGTGAGCCTGTCAAAATGCAAGCATGTTA
1 AAGAGCAAGCCTGTCAAAGTGCAAGC-TGTTG
15808074 AAGAGCAAGCCTGTC
1 AAGAGCAAGCCTGTC
15808089 GAAAAGCAAG
Statistics
Matches: 55, Mismatches: 21, Indels: 4
0.69 0.26 0.05
Matches are distributed among these distances:
31 23 0.42
32 32 0.58
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.19
Consensus pattern (31 bp):
AAGAGCAAGCCTGTCAAAGTGCAAGCTGTTG
Found at i:15808096 original size:16 final size:15
Alignment explanation
Indices: 15808049--15808100 Score: 59
Period size: 16 Copynumber: 3.3 Consensus size: 15
15808039 TCGAAGAGTG
15808049 AGCCTGTCAAAATGCA
1 AGCCTGTCAAAA-GCA
* *
15808065 AGCATGTTAAAGAGCA
1 AGCCTGTCAAA-AGCA
15808081 AGCCTGTCGAAAAGCA
1 AGCCTGTC-AAAAGCA
15808097 AGCC
1 AGCC
15808101 AAAAAAGTGC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
16 26 0.87
17 4 0.13
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (15 bp):
AGCCTGTCAAAAGCA
Found at i:15808180 original size:28 final size:28
Alignment explanation
Indices: 15808130--15808217 Score: 72
Period size: 28 Copynumber: 3.2 Consensus size: 28
15808120 TTGGTGAAAG
* * * *
15808130 CCAAAGTGGCGGACAATCTAAGTGCAAA
1 CCAAAATGACGGACAGTCCAAGTGCAAA
** *
15808158 CCAAAATGGTGGACAGTTCAAGT--AAA
1 CCAAAATGACGGACAGTCCAAGTGCAAA
* *
15808184 GCCAAAATGACGGGCAGTCCAAGTGCAAG
1 -CCAAAATGACGGACAGTCCAAGTGCAAA
15808213 CCAAA
1 CCAAA
15808218 GTGGCAGGTA
Statistics
Matches: 47, Mismatches: 10, Indels: 6
0.75 0.16 0.10
Matches are distributed among these distances:
26 3 0.06
27 19 0.40
28 23 0.49
29 2 0.04
ACGTcount: A:0.40, C:0.22, G:0.25, T:0.14
Consensus pattern (28 bp):
CCAAAATGACGGACAGTCCAAGTGCAAA
Found at i:15808505 original size:73 final size:72
Alignment explanation
Indices: 15808395--15808567 Score: 211
Period size: 73 Copynumber: 2.3 Consensus size: 72
15808385 CAAAATGAGG
* * * *
15808395 GACAGTTCAAGTTCAAGCCAAAGTGGCAGACAATCTAAATGTAAGCCAAAGGTGAGTGCAAGCTA
1 GACAG-TCAAGTACAAGCCAAAGTGGCAGACAATCTAAATGCAAGCCAAAAGTGAGTGCAAGCCA
15808460 AAATGGCA
65 AAATGGCA
* * * * *
15808468 GACAGCTCAAGTGCAAGCCAAAGTGGCGGACAATCTAAATGCAAGCCAAAAGTGGGTGTAATCCA
1 GACAG-TCAAGTACAAGCCAAAGTGGCAGACAATCTAAATGCAAGCCAAAAGTGAGTGCAAGCCA
*
15808533 AAGTGGCA
65 AAATGGCA
*
15808541 GACAGTCTAAATACAAGCCAAAAGTGG
1 GACAGTC-AAGTACAAGCC-AAAGTGG
15808568 GTGCAAGCCA
Statistics
Matches: 86, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
72 2 0.02
73 77 0.90
74 7 0.08
ACGTcount: A:0.39, C:0.19, G:0.25, T:0.16
Consensus pattern (72 bp):
GACAGTCAAGTACAAGCCAAAGTGGCAGACAATCTAAATGCAAGCCAAAAGTGAGTGCAAGCCAA
AATGGCA
Found at i:15808534 original size:45 final size:45
Alignment explanation
Indices: 15808478--15808590 Score: 163
Period size: 45 Copynumber: 2.5 Consensus size: 45
15808468 GACAGCTCAA
* *
15808478 GTGCAAGCCAAAGTGGCGGACAATCTAAATGCAAGCCAAAAGTGG
1 GTGCAAGCCAAAGTGGCAGACAATCTAAATACAAGCCAAAAGTGG
* * *
15808523 GTGTAATCCAAAGTGGCAGACAGTCTAAATACAAGCCAAAAGTGG
1 GTGCAAGCCAAAGTGGCAGACAATCTAAATACAAGCCAAAAGTGG
* *
15808568 GTGCAAGCCAAAATGACAGACAA
1 GTGCAAGCCAAAGTGGCAGACAA
15808591 CCCAAGTGAA
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 58 1.00
ACGTcount: A:0.41, C:0.19, G:0.26, T:0.14
Consensus pattern (45 bp):
GTGCAAGCCAAAGTGGCAGACAATCTAAATACAAGCCAAAAGTGG
Found at i:15808604 original size:45 final size:45
Alignment explanation
Indices: 15808478--15808607 Score: 154
Period size: 45 Copynumber: 2.9 Consensus size: 45
15808468 GACAGCTCAA
* *
15808478 GTGCAAGCCAAAGTGGCGGACAATCTAAATGCAAGCCAAAAGTGG
1 GTGCAAGCCAAAGTGGCAGACAATCTAAATGAAAGCCAAAAGTGG
* * *
15808523 GTGTAATCCAAAGTGGCAGACAGTCTAAAT-ACAAGCCAAAAGTGG
1 GTGCAAGCCAAAGTGGCAGACAATCTAAATGA-AAGCCAAAAGTGG
* * * * *
15808568 GTGCAAGCCAAAATGACAGACAACCCAAGTGAAAGCCAAA
1 GTGCAAGCCAAAGTGGCAGACAATCTAAATGAAAGCCAAA
15808608 GCAGCAGACA
Statistics
Matches: 70, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
45 69 0.99
46 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.25, T:0.13
Consensus pattern (45 bp):
GTGCAAGCCAAAGTGGCAGACAATCTAAATGAAAGCCAAAAGTGG
Found at i:15808623 original size:118 final size:118
Alignment explanation
Indices: 15808412--15808635 Score: 322
Period size: 118 Copynumber: 1.9 Consensus size: 118
15808402 CAAGTTCAAG
** * * * * *
15808412 CCAAAGTGGCAGACAATCTAAATGTAAGCCAAAGGTGAGTGCAAGCTAAAATGGCAGACAGCTCA
1 CCAAAGTGGCAGACAATCTAAATACAAGCCAAAAGTGAGTGCAAGCCAAAATGACAGACAACCCA
* ** *
15808477 AGTGCAAGCCAAAGTGGCGGACAATCTAAATGCAAGCCAAAAGTGGGTGTAAT
66 AGTGAAAGCCAAAGCAGCAGACAATCTAAATGCAAGCCAAAAGTGGGTGTAAT
* *
15808530 CCAAAGTGGCAGACAGTCTAAATACAAGCCAAAAGTGGGTGCAAGCCAAAATGACAGACAACCCA
1 CCAAAGTGGCAGACAATCTAAATACAAGCCAAAAGTGAGTGCAAGCCAAAATGACAGACAACCCA
*
15808595 AGTGAAAGCCAAAGCAGCAGACAGTCTAAATGCAAGCCAAA
66 AGTGAAAGCCAAAGCAGCAGACAATCTAAATGCAAGCCAAA
15808636 GTTGGTGCCA
Statistics
Matches: 92, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
118 92 1.00
ACGTcount: A:0.42, C:0.21, G:0.24, T:0.13
Consensus pattern (118 bp):
CCAAAGTGGCAGACAATCTAAATACAAGCCAAAAGTGAGTGCAAGCCAAAATGACAGACAACCCA
AGTGAAAGCCAAAGCAGCAGACAATCTAAATGCAAGCCAAAAGTGGGTGTAAT
Found at i:15814534 original size:28 final size:28
Alignment explanation
Indices: 15814493--15814548 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
15814483 ATAGTCTAAA
15814493 TGCAAGCCAAAGTGGCAGACAATCCAAG
1 TGCAAGCCAAAGTGGCAGACAATCCAAG
* *
15814521 TGCAAGCCAGAGTGGCAGACAGTCCAAG
1 TGCAAGCCAAAGTGGCAGACAATCCAAG
15814549 CAAAAGACAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.36, C:0.25, G:0.29, T:0.11
Consensus pattern (28 bp):
TGCAAGCCAAAGTGGCAGACAATCCAAG
Found at i:15817986 original size:23 final size:23
Alignment explanation
Indices: 15817925--15817986 Score: 56
Period size: 23 Copynumber: 2.6 Consensus size: 23
15817915 ATTTTTGTCA
*
15817925 TAAAATATATAATTAATAAAAATAC
1 TAAAATATAT--TAAATAAAAATAC
*
15817950 TAAAAT-TTTGTAAATAAAATATAC
1 TAAAATATAT-TAAATAAAA-ATAC
15817974 -AAAATATATTAAA
1 TAAAATATATTAAA
15817987 ATACACAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
23 17 0.55
24 8 0.26
25 6 0.19
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (23 bp):
TAAAATATATTAAATAAAAATAC
Found at i:15818045 original size:19 final size:19
Alignment explanation
Indices: 15818017--15818068 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 19
15818007 TAAATTAAAC
* **
15818017 AAAATTTTGGTATCTTTTA
1 AAAATATTGGTATCAATTA
15818036 AAAATATTGGTATTCAATTA
1 AAAATATTGGTA-TCAATTA
*
15818056 GAAATATTGGTAT
1 AAAATATTGGTAT
15818069 TTGGTTAGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 12 0.43
20 16 0.57
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (19 bp):
AAAATATTGGTATCAATTA
Found at i:15818271 original size:20 final size:19
Alignment explanation
Indices: 15818220--15818271 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 19
15818210 ACCATGATTG
* *
15818220 AAATATTGGTATTTAGTTAT
1 AAATTTTGGTA-TTAGTTAA
* *
15818240 AAATTCTAGTATTAGATTAA
1 AAATTTTGGTATTAG-TTAA
15818260 AAATTTTGGTAT
1 AAATTTTGGTAT
15818272 CCATTATCAG
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
19 4 0.16
20 21 0.84
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.46
Consensus pattern (19 bp):
AAATTTTGGTATTAGTTAA
Found at i:15824354 original size:14 final size:14
Alignment explanation
Indices: 15824335--15824362 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
15824325 TTCAACACTC
15824335 ACATTTGAATCTAA
1 ACATTTGAATCTAA
15824349 ACATTTGAATCTAA
1 ACATTTGAATCTAA
15824363 GTAACAAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (14 bp):
ACATTTGAATCTAA
Found at i:15829793 original size:19 final size:20
Alignment explanation
Indices: 15829769--15829809 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
15829759 AGTAACCCAG
* *
15829769 TAAAATTTTTAAATA-ATTT
1 TAAAATATTGAAATACATTT
15829788 TAAAATATTGAAATACATTT
1 TAAAATATTGAAATACATTT
15829808 TA
1 TA
15829810 TATAAAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (20 bp):
TAAAATATTGAAATACATTT
Found at i:15841537 original size:75 final size:75
Alignment explanation
Indices: 15841414--15841565 Score: 259
Period size: 75 Copynumber: 2.0 Consensus size: 75
15841404 AACACTTGGG
*
15841414 TGATGTGTCCCCAAATCCCTTGGCTTGTTGTGTTCACATTTACCTTATGAGAAATTTAGTTATGT
1 TGATGAGTCCCCAAATCCCTTGGCTTGTTGTGTTCACATTTACCTTATGAGAAATTTAGTTATGT
*
15841479 CGGAATGGCT
66 CGGAATGCCT
* * *
15841489 TGATGAGTCCCCAAATCCCTTGGCTTGTTGTGTTCACATTTACCTTATGGGAAATTTGGTTTTGT
1 TGATGAGTCCCCAAATCCCTTGGCTTGTTGTGTTCACATTTACCTTATGAGAAATTTAGTTATGT
15841554 CGGAATGCCT
66 CGGAATGCCT
15841564 TG
1 TG
15841566 GTTTTTTACT
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
75 72 1.00
ACGTcount: A:0.20, C:0.19, G:0.22, T:0.39
Consensus pattern (75 bp):
TGATGAGTCCCCAAATCCCTTGGCTTGTTGTGTTCACATTTACCTTATGAGAAATTTAGTTATGT
CGGAATGCCT
Found at i:15845193 original size:207 final size:206
Alignment explanation
Indices: 15844838--15845236 Score: 669
Period size: 207 Copynumber: 1.9 Consensus size: 206
15844828 ACTTTGGTGC
* *
15844838 AAGTGCTGTATGCTTTTCTTAAAAAGAGAAAGAACGAAAGTTTTGTTTGTATACCACAAAAGGCT
1 AAGTGCTGTATGCTTTTCTTAAAAAGAAAAAGAAAGAAAGTTTTGTTTGTATACCACAAAAGGC-
15844903 CTCCATCATCTTTTGGCATCTTGAGAAGGTCCTCCAATCCGGTTCTCACCCTTTGATCCTTCCAG
65 CTCCATCATCTTTTGGCATCTTGAGAAGGTCCTCCAATCCGGTTCTCACCCTTTGATCCTTCCAG
15844968 GAAGCATCAGAATCTGGTGACACACTTCTTGCATTGCTAGGATCAGCATTTGGTATTTGTCCCAA
130 GAAGCATCAGAATCTGGTGACACACTTCTTGCATTGCTAGGATCAGCATTTGGTATTTGTCCCAA
15845033 TAAACTTTGTCA
195 TAAACTTTGTCA
15845045 AAGTGCTGTATGCTTTTCTTAAAAAGCGAAAAAGAATAG-AAGTTTTGTTTGTATACCACAAAAG
1 AAGTGCTGTATGCTTTTCTTAAAAA--GAAAAAGAA-AGAAAGTTTTGTTTGTATACCACAAAAG
* *
15845109 G-CT-CGTCATCTTTTGGCATCTTGAGAAGGTCCTCCAATCTGGTTCTCACCCTTTTGATCCTTC
63 GCCTCCATCATCTTTTGGCATCTTGAGAAGGTCCTCCAATCCGGTTCTCACCC-TTTGATCCTTC
* * *
15845172 CGGGAAGCATCAGAATCTGGTGATACACTTCTTGCATTGCTAGGATCAGCGTTTGGTATTTGTCC
127 CAGGAAGCATCAGAATCTGGTGACACACTTCTTGCATTGCTAGGATCAGCATTTGGTATTTGTCC
15845237 GGTAGATTTT
Statistics
Matches: 181, Mismatches: 7, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
206 46 0.25
207 100 0.55
209 34 0.19
210 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (206 bp):
AAGTGCTGTATGCTTTTCTTAAAAAGAAAAAGAAAGAAAGTTTTGTTTGTATACCACAAAAGGCC
TCCATCATCTTTTGGCATCTTGAGAAGGTCCTCCAATCCGGTTCTCACCCTTTGATCCTTCCAGG
AAGCATCAGAATCTGGTGACACACTTCTTGCATTGCTAGGATCAGCATTTGGTATTTGTCCCAAT
AAACTTTGTCA
Found at i:15845495 original size:24 final size:24
Alignment explanation
Indices: 15845468--15845528 Score: 68
Period size: 27 Copynumber: 2.4 Consensus size: 24
15845458 CCTCTTTATC
*
15845468 TTTCTCCTCTTCTTCTTGCTTCCT
1 TTTCTCCTCTTCTTCGTGCTTCCT
* *
15845492 TTTCATTTCTTCTTCTTCGTGCTTCTT
1 TTTC---TCCTCTTCTTCGTGCTTCCT
15845519 TTTCTCCTCT
1 TTTCTCCTCT
15845529 AGCTCCTGAG
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
24 9 0.30
27 21 0.70
ACGTcount: A:0.02, C:0.33, G:0.05, T:0.61
Consensus pattern (24 bp):
TTTCTCCTCTTCTTCGTGCTTCCT
Found at i:15850071 original size:14 final size:14
Alignment explanation
Indices: 15850052--15850079 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
15850042 AACTTAAGAA
15850052 ACATAGCACCACAT
1 ACATAGCACCACAT
15850066 ACATAGCACCACAT
1 ACATAGCACCACAT
15850080 TAGAAATGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.36, G:0.07, T:0.14
Consensus pattern (14 bp):
ACATAGCACCACAT
Found at i:15868494 original size:15 final size:15
Alignment explanation
Indices: 15868474--15868504 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
15868464 TCTTAGTTTC
15868474 ACTAACCCAATTTTT
1 ACTAACCCAATTTTT
*
15868489 ACTAACCCGATTTTT
1 ACTAACCCAATTTTT
15868504 A
1 A
15868505 GGATGTGATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.26, G:0.03, T:0.39
Consensus pattern (15 bp):
ACTAACCCAATTTTT
Found at i:15879654 original size:43 final size:43
Alignment explanation
Indices: 15879604--15879689 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
15879594 TACAGTCCAT
15879604 CATTTGTATATAAATGACATGCATACATTTCATACACTAACAC
1 CATTTGTATATAAATGACATGCATACATTTCATACACTAACAC
15879647 CATTTGTATATAAATGACATGCATACATTTCATACACTAACAC
1 CATTTGTATATAAATGACATGCATACATTTCATACACTAACAC
15879690 TCAAGCAATA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.33
Consensus pattern (43 bp):
CATTTGTATATAAATGACATGCATACATTTCATACACTAACAC
Found at i:15895219 original size:27 final size:27
Alignment explanation
Indices: 15895181--15895236 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
15895171 CACATACACC
15895181 TAGGTGTAAGTTGTTAATTTGGTAAGT
1 TAGGTGTAAGTTGTTAATTTGGTAAGT
15895208 TAGGTGTAAGTTGTTAATTTGGTAAGT
1 TAGGTGTAAGTTGTTAATTTGGTAAGT
15895235 TA
1 TA
15895237 AGATATTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.27, C:0.00, G:0.29, T:0.45
Consensus pattern (27 bp):
TAGGTGTAAGTTGTTAATTTGGTAAGT
Found at i:15900984 original size:20 final size:19
Alignment explanation
Indices: 15900959--15901003 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
15900949 TGTTTTGAAA
*
15900959 AAAATTACAAAATAATCTTT
1 AAAATT-CAAAATAATCATT
* *
15900979 AAAATTCCAAATATTCATT
1 AAAATTCAAAATAATCATT
15900998 AAAATT
1 AAAATT
15901004 TCTATAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAATTCAAAATAATCATT
Found at i:15904122 original size:36 final size:36
Alignment explanation
Indices: 15904076--15904154 Score: 131
Period size: 36 Copynumber: 2.2 Consensus size: 36
15904066 ACTTCACAAC
* *
15904076 TTAGCCGTTCCTTCTATTTCTTCTTTCTGTTTCAGT
1 TTAGCTGTTCCTTCTATTTCTTCCTTCTGTTTCAGT
*
15904112 TTAGCTGTTCCTTCTGTTTCTTCCTTCTGTTTCAGT
1 TTAGCTGTTCCTTCTATTTCTTCCTTCTGTTTCAGT
15904148 TTAGCTG
1 TTAGCTG
15904155 CTTCACAACC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.08, C:0.24, G:0.14, T:0.54
Consensus pattern (36 bp):
TTAGCTGTTCCTTCTATTTCTTCCTTCTGTTTCAGT
Found at i:15904137 original size:13 final size:13
Alignment explanation
Indices: 15904119--15904144 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15904109 AGTTTAGCTG
15904119 TTCCTTCTGTTTC
1 TTCCTTCTGTTTC
15904132 TTCCTTCTGTTTC
1 TTCCTTCTGTTTC
15904145 AGTTTAGCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.31, G:0.08, T:0.62
Consensus pattern (13 bp):
TTCCTTCTGTTTC
Found at i:15907141 original size:67 final size:66
Alignment explanation
Indices: 15907066--15907278 Score: 150
Period size: 67 Copynumber: 3.2 Consensus size: 66
15907056 ATTATAATGT
15907066 ATTT-AATAATAATTATGTTTAAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTA
1 ATTTAAATAATAATTATGTTTAAATATGATTAAA-TATTTATTATTGATATTAATAATCTTATTA
15907130 AA
65 AA
* * ** * * * * * * *
15907132 ATTTAAATAACAATAACAAATTT--CTGCTAATTATAAAAATT-TTATT-AAATT-ATATATTTT
1 ATTTAAATAATAAT--TATGTTTAAAT-ATGATTA-AATATTTATTATTGATATTAATA-ATCTT
15907192 AATTAAAA
61 -ATT-AAA
* * * *
15907200 TATATTTAGTAATAATTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTAT
1 -AT-TTAAATAATAATTATGTTTAAATATGATT-AAATATTTATTATTGATATTAATAATCTTAT
15907265 TAAA
63 TAAA
15907269 ATTTAAATAA
1 ATTTAAATAA
15907279 CATTAACAAT
Statistics
Matches: 103, Mismatches: 28, Indels: 31
0.64 0.17 0.19
Matches are distributed among these distances:
65 3 0.03
66 12 0.12
67 23 0.22
68 17 0.17
69 20 0.19
70 18 0.17
71 7 0.07
72 3 0.03
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (66 bp):
ATTTAAATAATAATTATGTTTAAATATGATTAAATATTTATTATTGATATTAATAATCTTATTAA
A
Found at i:15907196 original size:137 final size:138
Alignment explanation
Indices: 15907008--15907287 Score: 445
Period size: 137 Copynumber: 2.0 Consensus size: 138
15906998 AATTTACCAA
* * *
15907008 AACAAATTTCTGCTAATTATTAAGAATTTTATTAAATTATATACCAAAATTATAATGTATTTAAT
1 AACAAATTTCTGCTAATTATTAAAAATTTTATTAAATTATATACCAAAATTAAAATATATTTAAT
* * *
15907073 AATAATTATGTTTAAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAA
66 AATAATTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAA
15907138 ATAACAAT
131 ATAACAAT
**** *
15907146 AACAAATTTCTGCTAATTA-TAAAAATTTTATTAAATTATATATTTTAATTAAAATATATTTAGT
1 AACAAATTTCTGCTAATTATTAAAAATTTTATTAAATTATATACCAAAATTAAAATATATTTAAT
15907210 AATAATTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAA
66 AATAATTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAA
*
15907275 ATAACATT
131 ATAACAAT
15907283 AACAA
1 AACAA
15907288 TAATCATTTA
Statistics
Matches: 130, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
137 111 0.85
138 19 0.15
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.44
Consensus pattern (138 bp):
AACAAATTTCTGCTAATTATTAAAAATTTTATTAAATTATATACCAAAATTAAAATATATTTAAT
AATAATTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAA
ATAACAAT
Found at i:15907198 original size:18 final size:17
Alignment explanation
Indices: 15907170--15907204 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
15907160 AATTATAAAA
*
15907170 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
15907187 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
15907205 TTAGTAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:15907320 original size:137 final size:145
Alignment explanation
Indices: 15906909--15907473 Score: 605
Period size: 156 Copynumber: 3.8 Consensus size: 145
15906899 AAAAGGGGGN
* * *
15906909 ATTTAATAATAATTATGTTTAAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAA
1 ATTTAATAATAATTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAA
* * * *
15906974 AAATTAAATAACAATAACAATAATAATTTACCAAAACAAATTTCTGCTAATTATTAAGAATTTTA
66 AATTTAAATAACAATAACAATAATCATTTACCAAAACAATTTTATGCTAATTA-T---AA--TTA
* *
15907039 TTAAATTATATACCAAAATTATAATGT
125 TT-AATTATAT-----AATTAAAATAT
* * *
15907066 ATTTAATAATAATTATGTTTAAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAA
1 ATTTAATAATAATTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAA
** * * *
15907131 AATTTAAATAACAATAACAAATTTCTGCTAATTA--TAAA-AATTTTAT--TAA--ATTA-TA-T
66 AATTTAAATAACAATAAC-AA-TAAT-C-ATTTACCAAAACAATTTTATGCTAATTATAATTATT
15907187 -ATT-T-TAATTAAAATAT
127 AATTATATAATTAAAATAT
*
15907203 ATTTAGTAATAATTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAA
1 ATTTAATAATAATTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAA
* *
15907268 AATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTGCTAATTATAAGAATTTTAT
66 AATTTAAATAACAATAACAATAATCATTTACCAAAACAATTTTATGCTAATTAT---AA--TTAT
15907333 TAAATTATATATTTTAATTAAAATAT
126 T-AA-T-TATA---TAATTAAAATAT
* *
15907359 ATTTAATTATAATTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATTTTATTAA
1 ATTTAATAATAATTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAA
15907424 AATTTAAATAACAATAACAATAATCATTTACCAAAACAATTTTATGCTAA
66 AATTTAAATAACAATAACAATAATCATTTACCAAAACAATTTTATGCTAA
15907474 GGGTATTCTA
Statistics
Matches: 354, Mismatches: 27, Indels: 55
0.81 0.06 0.13
Matches are distributed among these distances:
133 4 0.01
134 1 0.00
135 5 0.01
136 9 0.03
137 87 0.25
138 3 0.01
140 2 0.01
142 1 0.00
143 2 0.01
144 3 0.01
146 3 0.01
147 3 0.01
149 1 0.00
150 2 0.01
151 1 0.00
152 1 0.00
153 1 0.00
154 1 0.00
156 125 0.35
157 82 0.23
158 8 0.02
159 5 0.01
161 4 0.01
ACGTcount: A:0.47, C:0.06, G:0.04, T:0.44
Consensus pattern (145 bp):
ATTTAATAATAATTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAA
AATTTAAATAACAATAACAATAATCATTTACCAAAACAATTTTATGCTAATTATAATTATTAATT
ATATAATTAAAATAT
Found at i:15907354 original size:18 final size:18
Alignment explanation
Indices: 15907326--15907374 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 18
15907316 AATTATAAGA
15907326 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
15907343 ATTTTAATTAAA--ATAT
1 ATTTTAATTAAATTATAT
15907359 A-TTTAATTATAATTAT
1 ATTTTAATTA-AATTAT
15907375 GTTTAAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 8 0.29
16 7 0.25
17 5 0.18
18 8 0.29
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTTTAATTAAATTATAT
Found at i:15907360 original size:16 final size:16
Alignment explanation
Indices: 15907326--15907380 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
15907316 AATTATAAGA
15907326 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
15907343 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
15907359 A-TTTAATTATAAT-T
1 ATTTTAATTAAAATAT
15907373 ATGTTTAA
1 AT-TTTAA
15907381 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:15907630 original size:16 final size:17
Alignment explanation
Indices: 15907596--15907632 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
15907586 GATTAGCTAT
15907596 TACACCTCTAATCCCAA
1 TACACCTCTAATCCCAA
15907613 TACACCTCTAAT-CCAA
1 TACACCTCTAATCCCAA
15907629 TACA
1 TACA
15907633 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.24
Consensus pattern (17 bp):
TACACCTCTAATCCCAA
Found at i:15907813 original size:29 final size:29
Alignment explanation
Indices: 15907759--15907819 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
15907749 CCAGAATAAA
**
15907759 AAATATAAACTCGAAATATGGGTTTAACT
1 AAATATAAACTCGAAATATGAATTTAACT
** *
15907788 AAATATAGGCTCGAAATATGAATTTAAGT
1 AAATATAAACTCGAAATATGAATTTAACT
15907817 AAA
1 AAA
15907820 AACATAAGGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.48, C:0.08, G:0.15, T:0.30
Consensus pattern (29 bp):
AAATATAAACTCGAAATATGAATTTAACT
Found at i:15914693 original size:56 final size:56
Alignment explanation
Indices: 15914607--15914718 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
15914597 TATGTGCGTG
15914607 TGCAAATATAGAATAATGGAGTGCGTTGGTTTTGGTATTATTTAATTGGCTTTCTT
1 TGCAAATATAGAATAATGGAGTGCGTTGGTTTTGGTATTATTTAATTGGCTTTCTT
15914663 TGCAAATATAGAATAATGGAGTGCGTTGGTTTTGGTATTATTTAATTGGCTTTCTT
1 TGCAAATATAGAATAATGGAGTGCGTTGGTTTTGGTATTATTTAATTGGCTTTCTT
15914719 ACTGTTGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.25, C:0.07, G:0.23, T:0.45
Consensus pattern (56 bp):
TGCAAATATAGAATAATGGAGTGCGTTGGTTTTGGTATTATTTAATTGGCTTTCTT
Found at i:15918755 original size:333 final size:329
Alignment explanation
Indices: 15918017--15918761 Score: 1355
Period size: 333 Copynumber: 2.2 Consensus size: 329
15918007 CTTTGGTGTC
15918017 CATTGTCCTCTGGCATCCGATTTTTTTTTTTAAATCTTTAATTTGCCAACCAAAGACAATTTCAC
1 CATTGTCCTCTGGCATCCGATTTTTTTTTTTAAATCTTTAATTTGCCAA-C-----CAA----AC
15918082 AACTACTTCCCTTTATTTTTCCTTTCACTTTCTCTCTTGTACTATATAATATATATACAACCCTT
56 AACTACTTCCCTTTATTTTTCCTTTCACTTTCTCTCTTGTACTATATAATATATATACAACCCTT
15918147 TTGTCTTCTTTCTTTATTAACATACAACACTCCTACCTCCATTCGCCAGTGAAACTGTAAACAAA
121 TTGTCTTCTTTCTTTATTAACATACAACACTCCTACCTCCATTCGCCAGTGAAACTGTAAACAAA
15918212 ATGATTTTTAAACACTACCATTCATTTTAATATATATATATATGACTATTCAAAAAATTGAACAT
186 ATGATTTTTAAACACTACCATTCATTTTAATATATATATATATGACTATTCAAAAAATTGAACAT
15918277 ATTTGTATTAAATATCTCACCCACACTTCACATAAAACATAGCCCAAAAAGAAACCATACAATAT
251 ATTTGTATTAAATATCTCACCCACACTTCACATAAAACATAGCCCAAAAAGAAACCATACAATAT
15918342 TCACTTACATCATT
316 TCACTTACATCATT
15918356 CATTGTCCTCTGGCATCCGATTTTTTTTTTTAAATCTTTAATTTGCCAACCAAACAACTACTTCC
1 CATTGTCCTCTGGCATCCGATTTTTTTTTTTAAATCTTTAATTTGCCAACCAAACAACTACTTCC
15918421 CTTTATTTTTCCTTTCACTTTCTCTCTTGTACTATATAATATATATACAACCCTTTTGTCTTCTT
66 CTTTATTTTTCCTTTCACTTTCTCTCTTGTACTATATAATATATATACAACCCTTTTGTCTTCTT
15918486 TCTTTATTAACATACAACACTCCTACCTCCATTCGCCAGTGAAACTGTAAACAAAATGATTTTTA
131 TCTTTATTAACATACAACACTCCTACCTCCATTCGCCAGTGAAACTGTAAACAAAATGATTTTTA
15918551 AACACTACCATTCATTTTAATATATATATATATATATGACTATTCAAAAAATTGAACATATTTGT
196 AACACTACCATTCA-TTT--TA-ATATATATATATATGACTATTCAAAAAATTGAACATATTTGT
15918616 ATTAAATATCTCACCCACACTTCACATAAAACATAGCCCAAAAAGAAACCATACAATATTCACTT
257 ATTAAATATCTCACCCACACTTCACATAAAACATAGCCCAAAAAGAAACCATACAATATTCACTT
15918681 ACATCATT
322 ACATCATT
15918689 CATTGTCCTCTGGCATCCGATTTTTTTTTTTAAATCTTTAATTTGCCAACCAAACAACTACTTCC
1 CATTGTCCTCTGGCATCCGATTTTTTTTTTTAAATCTTTAATTTGCCAACCAAACAACTACTTCC
*
15918754 CTCTATTT
66 CTTTATTT
15918762 ATATCAAGCT
Statistics
Matches: 401, Mismatches: 1, Indels: 14
0.96 0.00 0.03
Matches are distributed among these distances:
329 156 0.39
330 3 0.01
332 2 0.00
333 190 0.47
338 1 0.00
339 49 0.12
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.39
Consensus pattern (329 bp):
CATTGTCCTCTGGCATCCGATTTTTTTTTTTAAATCTTTAATTTGCCAACCAAACAACTACTTCC
CTTTATTTTTCCTTTCACTTTCTCTCTTGTACTATATAATATATATACAACCCTTTTGTCTTCTT
TCTTTATTAACATACAACACTCCTACCTCCATTCGCCAGTGAAACTGTAAACAAAATGATTTTTA
AACACTACCATTCATTTTAATATATATATATATGACTATTCAAAAAATTGAACATATTTGTATTA
AATATCTCACCCACACTTCACATAAAACATAGCCCAAAAAGAAACCATACAATATTCACTTACAT
CATT
Found at i:15920761 original size:46 final size:46
Alignment explanation
Indices: 15920683--15920958 Score: 416
Period size: 46 Copynumber: 6.0 Consensus size: 46
15920673 ACATTGCTAT
*
15920683 AACTCAGTATGGTTTTCTTCATGGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCATCGAAATACCATACCTACTTTTCAC
*
15920729 AACTCAGTATGGTTTTCTTCA-CTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCATC-GAAATACCATACCTACTTTTCAC
* *
15920775 AACTCAGTATGGTTTTCTTCA-CTGAAACACCATACTTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCATC-GAAATACCATACCTACTTTTCAC
* *
15920821 AACTCAATATGG-TTTCTTTATCGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCATCGAAATACCATACCTACTTTTCAC
* *
15920866 AACTCAGTATGATTTTCTTTATCGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCATCGAAATACCATACCTACTTTTCAC
*
15920912 AACTCAGTATGGTTTTCTTCA-CTGAAATACCATACCTACGTTTCAC
1 AACTCAGTATGGTTTTCTTCATC-GAAATACCATACCTACTTTTCAC
15920958 A
1 A
15920959 CTTTGCCATG
Statistics
Matches: 214, Mismatches: 12, Indels: 8
0.91 0.05 0.03
Matches are distributed among these distances:
45 39 0.18
46 175 0.82
ACGTcount: A:0.29, C:0.25, G:0.09, T:0.37
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCATCGAAATACCATACCTACTTTTCAC
Found at i:15920944 original size:137 final size:138
Alignment explanation
Indices: 15920683--15920958 Score: 448
Period size: 137 Copynumber: 2.0 Consensus size: 138
15920673 ACATTGCTAT
* * *
15920683 AACTCAGTATGGTTTTCTTCATGGAAATACCATACCTACTTTTCACAACTCAGTATGGTTTTCTT
1 AACTCAATATGGTTTTCTTCATCGAAATACCATACCTACTTTTCACAACTCAGTATGATTTTCTT
*
15920748 CACTGAAACACCATACCTACTTTTCACAACTCAGTATGGTTTTCTTCACTGAAACACCATACTTA
66 CACTGAAACACCATACCTACTTTTCACAACTCAGTATGGTTTTCTTCACTGAAACACCATACCTA
*
15920813 CTTTTCAC
131 CGTTTCAC
*
15920821 AACTCAATATGG-TTTCTTTATCGAAATACCATACCTACTTTTCACAACTCAGTATGATTTTCTT
1 AACTCAATATGGTTTTCTTCATCGAAATACCATACCTACTTTTCACAACTCAGTATGATTTTCTT
* * *
15920885 TA-TCGAAATACCATACCTACTTTTCACAACTCAGTATGGTTTTCTTCACTGAAATACCATACCT
66 CACT-GAAACACCATACCTACTTTTCACAACTCAGTATGGTTTTCTTCACTGAAACACCATACCT
15920949 ACGTTTCAC
130 ACGTTTCAC
15920958 A
1 A
15920959 CTTTGCCATG
Statistics
Matches: 128, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
136 1 0.01
137 116 0.91
138 11 0.09
ACGTcount: A:0.29, C:0.25, G:0.09, T:0.37
Consensus pattern (138 bp):
AACTCAATATGGTTTTCTTCATCGAAATACCATACCTACTTTTCACAACTCAGTATGATTTTCTT
CACTGAAACACCATACCTACTTTTCACAACTCAGTATGGTTTTCTTCACTGAAACACCATACCTA
CGTTTCAC
Done.