Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 62 of 144
Found at i:18835258 original size:18 final size:18
Alignment explanation
Indices: 18835218--18835265 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 18
18835208 TTTTAATAAA
* *
18835218 GTTATCATTATTTTTACT
1 GTTATTATTATTTATACT
* *
18835236 ATTATTATTATTTATATT
1 GTTATTATTATTTATACT
*
18835254 GTTATTACTATT
1 GTTATTATTATT
18835266 ATCATGTTTA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.62
Consensus pattern (18 bp):
GTTATTATTATTTATACT
Found at i:18835368 original size:27 final size:26
Alignment explanation
Indices: 18835313--18835368 Score: 60
Period size: 27 Copynumber: 2.1 Consensus size: 26
18835303 TAGATTTAAT
* *
18835313 TATATATACATACATATCTTTGATTTA
1 TATATATACATACATATATTT-ATCTA
18835340 TATATATACATACTTATATATTT-TCTA
1 TATATATACATAC--ATATATTTATCTA
18835367 TA
1 TA
18835369 CTTTATAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
27 18 0.72
29 7 0.28
ACGTcount: A:0.38, C:0.11, G:0.02, T:0.50
Consensus pattern (26 bp):
TATATATACATACATATATTTATCTA
Found at i:18835374 original size:18 final size:17
Alignment explanation
Indices: 18835336--18835385 Score: 50
Period size: 16 Copynumber: 3.0 Consensus size: 17
18835326 ATATCTTTGA
*
18835336 TTTATATATATACATAC
1 TTTATATATTTACATAC
*
18835353 -TTATATATTTTCTATAC
1 TTTATATATTTAC-ATAC
*
18835370 TTTATA-ATTTATATAC
1 TTTATATATTTACATAC
18835386 ATATATACAT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
16 14 0.52
17 8 0.30
18 5 0.19
ACGTcount: A:0.36, C:0.10, G:0.00, T:0.54
Consensus pattern (17 bp):
TTTATATATTTACATAC
Found at i:18835375 original size:16 final size:17
Alignment explanation
Indices: 18835349--18835392 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
18835339 ATATATATAC
* *
18835349 ATACTTATATATTTTCT
1 ATACTTATATAATTTAT
18835366 ATACTT-TATAATTTAT
1 ATACTTATATAATTTAT
*
18835382 ATACATATATA
1 ATACTTATATA
18835393 CATAAATACA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52
Consensus pattern (17 bp):
ATACTTATATAATTTAT
Found at i:18835441 original size:35 final size:35
Alignment explanation
Indices: 18835402--18835476 Score: 100
Period size: 35 Copynumber: 2.1 Consensus size: 35
18835392 ACATAAATAC
18835402 ATTTTTATAA-T-ATATATATACATATGCACGTACAT
1 ATTTTTATAACTCATATATATACATAT--ACGTACAT
* *
18835437 ATTTTTATAACTCATTTATATATATATACGTACAT
1 ATTTTTATAACTCATATATATACATATACGTACAT
18835472 ATTTT
1 ATTTT
18835477 AAACTTTTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
35 23 0.64
36 1 0.03
37 12 0.33
ACGTcount: A:0.37, C:0.11, G:0.04, T:0.48
Consensus pattern (35 bp):
ATTTTTATAACTCATATATATACATATACGTACAT
Found at i:18842333 original size:11 final size:11
Alignment explanation
Indices: 18842308--18842349 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
18842298 AGCTCAATCA
18842308 ATTTTTTTA-T
1 ATTTTTTTATT
18842318 ATTTTTTTATT
1 ATTTTTTTATT
* *
18842329 CTTTTTTGATT
1 ATTTTTTTATT
18842340 GATTTTTTTA
1 -ATTTTTTTA
18842350 AACAAAATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
10 9 0.35
11 10 0.38
12 7 0.27
ACGTcount: A:0.17, C:0.02, G:0.05, T:0.76
Consensus pattern (11 bp):
ATTTTTTTATT
Found at i:18843883 original size:21 final size:21
Alignment explanation
Indices: 18843833--18843885 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
18843823 ATAGAAATCT
* * *
18843833 CACATGCCCATGTGGCTAGGG
1 CACATGCCCGTGTGGCCAAGG
* *
18843854 GACACGCCCGTGTGGCCAAGG
1 CACATGCCCGTGTGGCCAAGG
18843875 CACATGCCCGT
1 CACATGCCCGT
18843886 ATGAAAATTG
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.19, C:0.34, G:0.32, T:0.15
Consensus pattern (21 bp):
CACATGCCCGTGTGGCCAAGG
Found at i:18849124 original size:16 final size:16
Alignment explanation
Indices: 18849100--18849130 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
18849090 TGATTCTGAG
*
18849100 CATGGCATACTGCATA
1 CATGACATACTGCATA
18849116 CATGACATACTGCAT
1 CATGACATACTGCAT
18849131 GGGGTTGGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (16 bp):
CATGACATACTGCATA
Found at i:18851977 original size:14 final size:14
Alignment explanation
Indices: 18851958--18852016 Score: 63
Period size: 13 Copynumber: 4.4 Consensus size: 14
18851948 CAAACAAACA
18851958 AAAAATTAAAATAT
1 AAAAATTAAAATAT
18851972 AAAAATT-AAAT-T
1 AAAAATTAAAATAT
*
18851984 AAAAATAAAAATAT
1 AAAAATTAAAATAT
*
18851998 -TAAATTAAAA-ATT
1 AAAAATTAAAATA-T
18852011 AAAAAT
1 AAAAAT
18852017 GGCTAAATTA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
12 8 0.22
13 17 0.46
14 12 0.32
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
AAAAATTAAAATAT
Found at i:18851990 original size:20 final size:20
Alignment explanation
Indices: 18851960--18852016 Score: 84
Period size: 20 Copynumber: 3.0 Consensus size: 20
18851950 AACAAACAAA
18851960 AAATT-AAAATATAAAAATT
1 AAATTAAAAATATAAAAATT
18851979 AAATTAAAAATA-AAAATATT
1 AAATTAAAAATATAAAA-ATT
18851999 AAATTAAAAAT-TAAAAAT
1 AAATTAAAAATATAAAAAT
18852017 GGCTAAATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
19 11 0.31
20 24 0.69
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (20 bp):
AAATTAAAAATATAAAAATT
Found at i:18852009 original size:7 final size:7
Alignment explanation
Indices: 18851958--18852016 Score: 56
Period size: 7 Copynumber: 8.9 Consensus size: 7
18851948 CAAACAAACA
18851958 AAAAATT
1 AAAAATT
18851965 -AAAATAT
1 AAAAAT-T
18851972 AAAAATT
1 AAAAATT
18851979 --AAATT
1 AAAAATT
18851984 AAAAA-T
1 AAAAATT
18851990 AAAAA-T
1 AAAAATT
*
18851996 ATTAAATT
1 A-AAAATT
18852004 AAAAATT
1 AAAAATT
18852011 AAAAAT
1 AAAAAT
18852017 GGCTAAATTA
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
5 5 0.11
6 13 0.30
7 19 0.43
8 7 0.16
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
AAAAATT
Found at i:18853132 original size:11 final size:11
Alignment explanation
Indices: 18853116--18853140 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
18853106 GATTTTCCGA
18853116 TTTTCACTCAT
1 TTTTCACTCAT
18853127 TTTTCACTCAT
1 TTTTCACTCAT
18853138 TTT
1 TTT
18853141 ACTCCCAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.24, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTTCACTCAT
Found at i:18853497 original size:41 final size:42
Alignment explanation
Indices: 18853415--18853537 Score: 162
Period size: 41 Copynumber: 2.9 Consensus size: 42
18853405 AAAAAAACGT
*
18853415 CGCTAAAGAACATGACCTTTAGCGACGC-TTTACCCAAAAATGC
1 CGCTAAAG-ACATGACCTTTAGCGACGCTTTTA-TCAAAAATGC
* *
18853458 CGCTAAAGACATGATCTTTAGCG-CGCTTTTATCACAAATGC
1 CGCTAAAGACATGACCTTTAGCGACGCTTTTATCAAAAATGC
*
18853499 CGCTAAA-AGCATGACCTTTAGCGACGCTTTTATCGAAAA
1 CGCTAAAGA-CATGACCTTTAGCGACGCTTTTATCAAAAA
18853538 CGCTACTAAA
Statistics
Matches: 71, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
40 1 0.01
41 31 0.44
42 31 0.44
43 8 0.11
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (42 bp):
CGCTAAAGACATGACCTTTAGCGACGCTTTTATCAAAAATGC
Found at i:18853549 original size:42 final size:42
Alignment explanation
Indices: 18853415--18853537 Score: 148
Period size: 42 Copynumber: 2.9 Consensus size: 42
18853405 AAAAAAACGT
*
18853415 CGCT-AAAGAACATGACCTTTAGCGACGC-TTTACCCAAAAATGC
1 CGCTAAAAG-ACATGACCTTTAGCGACGCTTTTA-TC-AAAATGC
*
18853458 CGCT-AAAGACATGATCTTTAGCG-CGCTTTTATCACAAATGC
1 CGCTAAAAGACATGACCTTTAGCGACGCTTTTATCA-AAATGC
18853499 CGCTAAAAG-CATGACCTTTAGCGACGCTTTTATCGAAAA
1 CGCTAAAAGACATGACCTTTAGCGACGCTTTTATC-AAAA
18853538 CGCTACTAAA
Statistics
Matches: 72, Mismatches: 3, Indels: 11
0.84 0.03 0.13
Matches are distributed among these distances:
40 1 0.01
41 27 0.38
42 35 0.49
43 9 0.12
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (42 bp):
CGCTAAAAGACATGACCTTTAGCGACGCTTTTATCAAAATGC
Found at i:18862466 original size:145 final size:145
Alignment explanation
Indices: 18862203--18862493 Score: 582
Period size: 145 Copynumber: 2.0 Consensus size: 145
18862193 GCGAGTTTAG
18862203 GACGAACGGATTGCCTAAGGCCGCACGGATTGCGAGACGAAAGGTCTAGCCCCGTGACACTTGCA
1 GACGAACGGATTGCCTAAGGCCGCACGGATTGCGAGACGAAAGGTCTAGCCCCGTGACACTTGCA
18862268 TGAACATTATAGAAGCAAGCCAGTGCTTGTGGTAATCGATCAAGTTCTGAAATCAATTATGGTAT
66 TGAACATTATAGAAGCAAGCCAGTGCTTGTGGTAATCGATCAAGTTCTGAAATCAATTATGGTAT
18862333 TGCTTGCATGAACAT
131 TGCTTGCATGAACAT
18862348 GACGAACGGATTGCCTAAGGCCGCACGGATTGCGAGACGAAAGGTCTAGCCCCGTGACACTTGCA
1 GACGAACGGATTGCCTAAGGCCGCACGGATTGCGAGACGAAAGGTCTAGCCCCGTGACACTTGCA
18862413 TGAACATTATAGAAGCAAGCCAGTGCTTGTGGTAATCGATCAAGTTCTGAAATCAATTATGGTAT
66 TGAACATTATAGAAGCAAGCCAGTGCTTGTGGTAATCGATCAAGTTCTGAAATCAATTATGGTAT
18862478 TGCTTGCATGAACAT
131 TGCTTGCATGAACAT
18862493 G
1 G
18862494 TGAGGTTGTT
Statistics
Matches: 146, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
145 146 1.00
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.24
Consensus pattern (145 bp):
GACGAACGGATTGCCTAAGGCCGCACGGATTGCGAGACGAAAGGTCTAGCCCCGTGACACTTGCA
TGAACATTATAGAAGCAAGCCAGTGCTTGTGGTAATCGATCAAGTTCTGAAATCAATTATGGTAT
TGCTTGCATGAACAT
Found at i:18863214 original size:19 final size:20
Alignment explanation
Indices: 18863175--18863218 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
18863165 GGGTGAAAGG
18863175 ATAAATTATGAGATCCAAAA
1 ATAAATTATGAGATCCAAAA
18863195 ATAAATTATGAGAT-CAAAA
1 ATAAATTATGAGATCCAAAA
18863214 ATAAA
1 ATAAA
18863219 CATGTATCCG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 10 0.42
20 14 0.58
ACGTcount: A:0.59, C:0.07, G:0.09, T:0.25
Consensus pattern (20 bp):
ATAAATTATGAGATCCAAAA
Found at i:18879624 original size:19 final size:19
Alignment explanation
Indices: 18879577--18879624 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
18879567 CACGGTCAAA
*
18879577 TTTAAAAAAATATATTTTT
1 TTTAAAAAAACATATTTTT
*
18879596 TTTATAAAAACCA-ATTTTT
1 TTTA-AAAAAACATATTTTT
18879615 TTTAAAAAAA
1 TTTAAAAAAA
18879625 AACTTCATTC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 5 0.20
19 14 0.56
20 6 0.24
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTAAAAAAACATATTTTT
Found at i:18881050 original size:44 final size:44
Alignment explanation
Indices: 18880991--18881434 Score: 254
Period size: 44 Copynumber: 10.3 Consensus size: 44
18880981 ACTAGATGCG
* *
18880991 ATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* * * * *
18881035 ATCTGCTCCACTGCAACTTCAGGGAGGTAGGAT-TG-GCTTCTTCT
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTT-TT-A
* * * * *
18881079 GTCTGCTCCACTGCAACTTCA-AGGAGATAAGA-C--TAGATGTG
1 ATCTGCTCCACTGCAACTTCAGA-GAGATAAGATCTGTGGTTTTA
* * * *
18881120 ATCTGCTCTACTGTAACTTCAGAGAGATAAGATATGTGATTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
** * * * * *
18881164 ATCCACTCCACTGCAACTTTAGGGAGATAGGAT-TG-GTTTCTTTT
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTG-GT-TTTA
* * * ***
18881208 GTCTGCTCCACTGCAACTTCAGGGAGATAAGA-C--TGGATGCG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
** *
18881249 ATCTGCTCTGCTGCAACTTCAAAGAGATAAGATCTGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* * ** * * * *
18881293 ATCCGCTCTACTATAACTTCAGGGAGATAGGAT-TG-GTTTCTTTT
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTG-GT-TTTA
* * * * * *
18881337 GTCTGCTCCACTGCAACTTCAGGGAGATAA-AAC--TGGATGTG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* * *
18881378 ATCTGCTCTACTGCAATTTCAGAGAGATAAGATCTGTAGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
**
18881422 ATCCACTCCACTG
1 ATCTGCTCCACTG
18881435 TAGGGAGATA
Statistics
Matches: 292, Mismatches: 85, Indels: 46
0.69 0.20 0.11
Matches are distributed among these distances:
41 83 0.28
42 10 0.03
43 14 0.05
44 185 0.63
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
Found at i:18881174 original size:85 final size:84
Alignment explanation
Indices: 18881084--18881434 Score: 251
Period size: 85 Copynumber: 4.1 Consensus size: 84
18881074 CTTCTGTCTG
* *
18881084 CTCCACTGCAACTTCAAGGAGATAAGACTAGATGTGATCTGCTCTACTGTAACTTCAGAGAGATA
1 CTCCACTGCAACTTCAAGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGAGATA
*
18881149 AGATATGTGATTTTAATCCA
66 AGATCTG-GATTTTAATCCA
* * * * * * * *
18881169 CTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTTTG-TCTGCTCCACTGCAACTTCAGGGA
1 CTCCACTGCAACTTCAAGGAGATAAGACTGG----ATGTGATCTGCTCTACTGCAACTTCAGAGA
*** **
18881233 GATAAGA-CTGGA-TGCGATCTG
62 GATAAGATCTGGATTTTAATCCA
** * * * * * ** *
18881254 CTCTGCTGCAACTTCAAAGAGATAAGATCTGTGGTTTTAATCCGCTCTACTATAACTTCAGGGAG
1 CTCCACTGCAACTTCAAGGAGATAAGA-C--TGGATGTGATCTGCTCTACTGCAACTTCAGAGAG
* * ** **
18881319 ATAGGAT-TGGTTTCTTTTGTCTG
63 ATAAGATCTGG-AT-TTTAATCCA
* * *
18881342 CTCCACTGCAACTTCAGGGAGATAAAACTGGATGTGATCTGCTCTACTGCAATTTCAGAGAGATA
1 CTCCACTGCAACTTCAAGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGAGATA
*
18881407 AGATCTGTAGTTTTAATCCA
66 AGATCTGGA-TTTTAATCCA
18881427 CTCCACTG
1 CTCCACTG
18881435 TAGGGAGATA
Statistics
Matches: 198, Mismatches: 54, Indels: 28
0.71 0.19 0.10
Matches are distributed among these distances:
84 4 0.02
85 125 0.63
86 5 0.03
87 3 0.02
88 58 0.29
89 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.31
Consensus pattern (84 bp):
CTCCACTGCAACTTCAAGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGAGATA
AGATCTGGATTTTAATCCA
Found at i:18881180 original size:129 final size:129
Alignment explanation
Indices: 18880972--18881545 Score: 777
Period size: 129 Copynumber: 4.5 Consensus size: 129
18880962 ACATCTTTAG
*
18880972 GGAGATAAGACTAGATGCGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTGGTTTTAAT
1 GGAGATAAGACTAGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAAT
** * * *
18881037 CTGCTCCACTGCAACTTCAGGGAGGTAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCAA
66 CCACTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTTTGTCTGCTCCACTGCAACTTCAA
* * * *
18881101 GGAGATAAGACTAGATGTGATCTGCTCTACTGTAACTTCAGAGAGATAAGATATGTGATTTTAAT
1 GGAGATAAGACTAGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAAT
* *
18881166 CCACTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTTTGTCTGCTCCACTGCAACTTCAG
66 CCACTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTTTGTCTGCTCCACTGCAACTTCAA
* * *
18881230 GGAGATAAGACTGGATGCGATCTGCTCTGCTGCAACTTCAAAGAGATAAGATCTGTGGTTTTAAT
1 GGAGATAAGACTAGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAAT
* * ** *
18881295 CCGCTCTACTATAACTTCAGGGAGATAGGATTGGTTTCTTTTGTCTGCTCCACTGCAACTTCAG
66 CCACTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTTTGTCTGCTCCACTGCAACTTCAA
* * * * *
18881359 GGAGATAAAACTGGATGTGATCTGCTCTACTGCAATTTCAGAGAGATAAGATCTGTAGTTTTAAT
1 GGAGATAAGACTAGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAAT
* * * *
18881424 CCACTCCACTG-----T-AGGGAGATAGAATTTGTTTCTTTTGTCTGCTCCACTACAACTT-TA
66 CCACTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTTTGTCTGCTCCACTGCAACTTCAA
* * * *
18881481 GAGAGATAAAACT-GAATGCGATCTGCTATACTGTAACTTCAAAGAGATAAGATCTGTGGTTTTA
1 G-GAGATAAGACTAG-ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
18881545 A
64 A
18881546 CCCGCTCTAC
Statistics
Matches: 399, Mismatches: 44, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
122 2 0.01
123 95 0.24
124 1 0.00
129 301 0.75
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (129 bp):
GGAGATAAGACTAGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAAT
CCACTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTTTGTCTGCTCCACTGCAACTTCAA
Found at i:18881427 original size:258 final size:252
Alignment explanation
Indices: 18880950--18881576 Score: 896
Period size: 258 Copynumber: 2.5 Consensus size: 252
18880940 GCTATCAACA
* * * * *
18880950 GTCTGTTCCACTACATCTTTAGGGAGATAAGACTAGATGCGATCTGCTCTACTGCAACTTTAGAG
1 GTCTGCTCCACTACAACTTTAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAAAG
* * * *
18881015 AGATAAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGGTAGGATTGGCTTCTTCTG
66 AGATAAGATCTGTGGTTTTAATCCGCTCTACTGTAACTTCAGGGAGATAGGATTGGCTTCTTCTG
* *
18881080 TCTGCTCCACTGCAACTTCAAGGAGATAAGACTAGATGTGATCTGCTCTACTGTAACTTCAGAGA
131 TCTGCTCCACTGCAACTTCAAGGAGATAAAACTAGATGTGATCTGCTCTACTGCAACTTCAGAGA
*
18881145 GATAAGATATGTGATTTTAATCCACTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTTT
196 GATAAGATATGTGATTTTAATCCACTCCACTG------TAGGGAGATAGAATTGGTTTCTTTT
* * *
18881208 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTGCTGCAACTTCAAAG
1 GTCTGCTCCACTACAACTTTAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAAAG
* * *
18881273 AGATAAGATCTGTGGTTTTAATCCGCTCTACTATAACTTCAGGGAGATAGGATTGGTTTCTTTTG
66 AGATAAGATCTGTGGTTTTAATCCGCTCTACTGTAACTTCAGGGAGATAGGATTGGCTTCTTCTG
* * *
18881338 TCTGCTCCACTGCAACTTCAGGGAGATAAAACTGGATGTGATCTGCTCTACTGCAATTTCAGAGA
131 TCTGCTCCACTGCAACTTCAAGGAGATAAAACTAGATGTGATCTGCTCTACTGCAACTTCAGAGA
* *
18881403 GATAAGATCTGT-AGTTTTAATCCACTCCACTGTAGGGAGATAGAATTTGTTTCTTTT
196 GATAAGATATGTGA-TTTTAATCCACTCCACTGTAGGGAGATAGAATTGGTTTCTTTT
* * * * *
18881460 GTCTGCTCCACTACAACTTTAGAGAGATAAAACTGAATGCGATCTGCTATACTGTAACTTCAAAG
1 GTCTGCTCCACTACAACTTTAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAAAG
* * * *
18881525 AGATAAGATCTGTGGTTTTAACCCGCTCTACTGTAATTTTAGGAAGATAGGA
66 AGATAAGATCTGTGGTTTTAATCCGCTCTACTGTAACTTCAGGGAGATAGGA
18881577 CTAGATGCGA
Statistics
Matches: 332, Mismatches: 36, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
252 127 0.38
257 1 0.00
258 204 0.61
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (252 bp):
GTCTGCTCCACTACAACTTTAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAAAG
AGATAAGATCTGTGGTTTTAATCCGCTCTACTGTAACTTCAGGGAGATAGGATTGGCTTCTTCTG
TCTGCTCCACTGCAACTTCAAGGAGATAAAACTAGATGTGATCTGCTCTACTGCAACTTCAGAGA
GATAAGATATGTGATTTTAATCCACTCCACTGTAGGGAGATAGAATTGGTTTCTTTT
Found at i:18881763 original size:50 final size:50
Alignment explanation
Indices: 18881629--18882587 Score: 492
Period size: 50 Copynumber: 19.4 Consensus size: 50
18881619 CTGTGGTTTA
* * * * * *
18881629 TAGCTTTAATCTTTTTAATTACAATGTCGGGGAAGCAAGATTCACTGTTG
1 TAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTG
* * ** * ** * * *
18881679 TAGCTTCAATCAGTTCTT--CTACACCGCCAAGGAAGTCAGATTTGCTGTTG
1 TAGCTTCAATC--TTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTG
* * *
18881729 TAGCTTCAATCTTTTTAACTGCAATGTTGGGGAAGCAAGATTCGCTGTTG
1 TAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTG
** ** * * * * *
18881779 TAGCTTCAATCTGCTCCACTACACTGCCAGGGAAGTAAGATTTGCCGTTG
1 TAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTG
* * * * * ** *
18881829 TGGCTTCAATATTTTTAATTGCAATATCGAGGAAACAAGATACGCCGTTG
1 TAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTG
* ** ** * * * *
18881879 TAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCCCCATTG
1 TAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTG
* * * *
18881929 TGGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAAATTCGCCGTTG
1 TAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTG
* *** * * * * *
18881979 TAGCTTCAATCTGTCCCACTGCACTGCCAGGGAAGTAAGACTCACCGTTG
1 TAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTG
* * * * *
18882029 TGGCTTCAATCTTTTTAATTGCAATATCGGGGAA-CAAGATTCACCGTTG
1 TAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTG
* ** * * * * *
18882078 TAGCTTCAATCTGTTCCACTGTACTGCCGGGGAAGTAAGACTCGCTGTTG
1 TAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTG
* * * * ** * *
18882128 TGGCATCAATCTTTTTAATTACAATGTCGGGGAAACAAGATTCACAGTTG
1 TAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTG
* ** * **** * **
18882178 TAGCTTCAATCTGTTCCAGTGCACCACCAGGGAAGTAAGATTCATCGTTATG
1 TAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCG-T-TG
* * * * *
18882230 T-G-TTCAATCTTTTTAATTACAATGTCGAGGAAATAAGATTTGCCGTTG
1 TAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTG
* * ** ** *
18882278 TAGCTTTAATCTATTCCACTGC-A--TC--GCCAG---GATTCGTCGTTG
1 TAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTG
** * * * *
18882320 TAGCTTCAAT-TTGTTCCACTGCACCA-CT-AGGGAAGTAAGACTCGCCATTG
1 TAGCTTCAATCTT-TTTAACTGCA--ATGTCGGGGAAGTAAGATTCGCCGTTG
* * ** *
18882370 TGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAACAAGATTCGTCGTTG
1 TAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTG
* ** * * * * *
18882420 TAGCTTCAATCTGTTCCACTGTACTGCCAGGGAAGTAAGACTCGCCGTTG
1 TAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTG
* * * ** * * *
18882470 TGGCTTCAATCTTTTTAATTACAATGTCGGGGAAACAAAATTTGCCGTTA
1 TAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTG
* ** * * * * * *
18882520 TAGCTTCAATCTGTTCCACTGCACTGCCAGAGAAGTAAGACTCGCTGTTG
1 TAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTG
*
18882570 TGGCTTCAATCTTTTTAA
1 TAGCTTCAATCTTTTTAA
18882588 TTGTAACCTC
Statistics
Matches: 646, Mismatches: 241, Indels: 44
0.69 0.26 0.05
Matches are distributed among these distances:
41 1 0.00
42 28 0.04
45 3 0.00
46 1 0.00
47 5 0.01
48 8 0.01
49 42 0.07
50 547 0.85
51 4 0.01
52 7 0.01
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (50 bp):
TAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTG
Found at i:18881802 original size:100 final size:100
Alignment explanation
Indices: 18881631--18882308 Score: 793
Period size: 100 Copynumber: 6.8 Consensus size: 100
18881621 GTGGTTTATA
* * * * *
18881631 GCTTTAATCTTTTTAATTACAATGTCGGGGAAGCAAGATTCACTGTTGTAGCTTCAATCAGTTCT
1 GCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * * * * *
18881696 TCTACACCGCCAAGGAAGTCAGATTTGCTGTTGTA
66 ACTGCACCGCCAGGGAAGTAAGATTCGCCGTTGTG
* * * * *
18881731 GCTTCAATCTTTTTAACTGCAATGTTGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGCTCC
1 GCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * *
18881796 ACTACACTGCCAGGGAAGTAAGATTTGCCGTTGTG
66 ACTGCACCGCCAGGGAAGTAAGATTCGCCGTTGTG
* * * * * *
18881831 GCTTCAATATTTTTAATTGCAATATCGAGGAAACAAGATACGCCGTTGTAGCTTCAATCTGTTCC
1 GCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* *
18881896 ACTGCACCGCCAGGGAAGTAAGATTCCCCATTGTG
66 ACTGCACCGCCAGGGAAGTAAGATTCGCCGTTGTG
* * * * *
18881931 GCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAAATTCGCCGTTGTAGCTTCAATCTGTCCC
1 GCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * *
18881996 ACTGCACTGCCAGGGAAGTAAGACTCACCGTTGTG
66 ACTGCACCGCCAGGGAAGTAAGATTCGCCGTTGTG
*
18882031 GCTTCAATCTTTTTAATTGCAATATCGGGGAA-CAAGATTCACCGTTGTAGCTTCAATCTGTTCC
1 GCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * * *
18882095 ACTGTACTGCCGGGGAAGTAAGACTCGCTGTTGTG
66 ACTGCACCGCCAGGGAAGTAAGATTCGCCGTTGTG
* * * *
18882130 GCATCAATCTTTTTAATTACAATGTCGGGGAAACAAGATTCACAGTTGTAGCTTCAATCTGTTCC
1 GCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * ** *
18882195 AGTGCACCACCAGGGAAGTAAGATTCATCGTTATG
66 ACTGCACCGCCAGGGAAGTAAGATTCGCCGTTGTG
* * ** ** * *
18882230 TG-TTCAATCTTTTTAATTACAATGTCGAGGAAATAAGATTTGCCGTTGTAGCTTTAATCTATTC
1 -GCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTC
*
18882294 CACTGCATCGCCAGG
65 CACTGCACCGCCAGG
18882309 ATTCGTCGTT
Statistics
Matches: 500, Mismatches: 76, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
99 88 0.18
100 411 0.82
101 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (100 bp):
GCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCC
ACTGCACCGCCAGGGAAGTAAGATTCGCCGTTGTG
Found at i:18882381 original size:242 final size:242
Alignment explanation
Indices: 18882073--18882542 Score: 683
Period size: 242 Copynumber: 1.9 Consensus size: 242
18882063 CAAGATTCAC
* ** * **
18882073 CGTTGTAGCTTCAATCTGTTCCACTGTACTGCCGGGGAAGTAAGACTCGCTGTTGTGGCATCAAT
1 CGTTGTAGCTTCAATCTGTTCCACTGCACCACCAGGGAAGTAAGACTCGCCATTGTGGCATCAAT
*
18882138 CTTTTTAATTACAATGTCGGGGAAACAAGATTC-ACAGTTGTAGCTTCAATCTGTTCCAGTGCAC
66 CTTTTTAATTACAATGTCGGGGAAACAAGATTCGAC-GTTGTAGCTTCAATCTGTTCCACTGCAC
* * *
18882202 CACCAGGGAAGTAAGATTCATCGTTATGTG-TTCAATCTTTTTAATTACAATGTCGAGGAAATAA
130 CACCAGGGAAGTAAGACTCACCGTTATG-GCTTCAATCTTTTTAATTACAATGTCGAGGAAACAA
* * *
18882266 GATTTGCCGTTGTAGCTTTAATCTATTCCACTGCATCGCCAGGATTCGT
194 AATTTGCCGTTATAGCTTCAATCTATTCCACTGCATCGCCAGGATTCGT
* * *
18882315 CGTTGTAGCTTCAATTTGTTCCACTGCACCACTAGGGAAGTAAGACTCGCCATTGTGGCTTCAAT
1 CGTTGTAGCTTCAATCTGTTCCACTGCACCACCAGGGAAGTAAGACTCGCCATTGTGGCATCAAT
* * * *
18882380 CTTTTTAATTGCAATGTCGGGGAAACAAGATTCGTCGTTGTAGCTTCAATCTGTTCCACTGTACT
66 CTTTTTAATTACAATGTCGGGGAAACAAGATTCGACGTTGTAGCTTCAATCTGTTCCACTGCACC
* * * *
18882445 GCCAGGGAAGTAAGACTCGCCGTTGTGGCTTCAATCTTTTTAATTACAATGTCGGGGAAACAAAA
131 ACCAGGGAAGTAAGACTCACCGTTATGGCTTCAATCTTTTTAATTACAATGTCGAGGAAACAAAA
*
18882510 TTTGCCGTTATAGCTTCAATCTGTTCCACTGCA
196 TTTGCCGTTATAGCTTCAATCTATTCCACTGCA
18882543 CTGCCAGAGA
Statistics
Matches: 201, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
241 1 0.00
242 199 0.99
243 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (242 bp):
CGTTGTAGCTTCAATCTGTTCCACTGCACCACCAGGGAAGTAAGACTCGCCATTGTGGCATCAAT
CTTTTTAATTACAATGTCGGGGAAACAAGATTCGACGTTGTAGCTTCAATCTGTTCCACTGCACC
ACCAGGGAAGTAAGACTCACCGTTATGGCTTCAATCTTTTTAATTACAATGTCGAGGAAACAAAA
TTTGCCGTTATAGCTTCAATCTATTCCACTGCATCGCCAGGATTCGT
Found at i:18882450 original size:142 final size:142
Alignment explanation
Indices: 18882174--18882440 Score: 383
Period size: 142 Copynumber: 1.9 Consensus size: 142
18882164 AAGATTCACA
* * * *
18882174 GTTGTAGCTTCAATCTGTTCCAGTGCACCACCAGGGAAGTAAGATTCATCGTTATGTGTTCAATC
1 GTTGTAGCTTCAATCTGTTCCACTGCACCACCAGGGAAGTAAGACTCACCATTATGTGTTCAATC
* * *
18882239 TTTTTAATTACAATGTCGAGGAAATAAGATTTGCCGTTGTAGCTTTAATCTATTCCACTGCATCG
66 TTTTTAATTACAATGTCGAGGAAACAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCATCG
18882304 CCAGGATTCGTC
131 CCAGGATTCGTC
* * * *
18882316 GTTGTAGCTTCAATTTGTTCCACTGCACCACTAGGGAAGTAAGACTCGCCATTGTG-GCTTCAAT
1 GTTGTAGCTTCAATCTGTTCCACTGCACCACCAGGGAAGTAAGACTCACCATTATGTG-TTCAAT
* * * *
18882380 CTTTTTAATTGCAATGTCGGGGAAACAAGATTCGTCGTTGTAGCTTCAATCTGTTCCACTG
65 CTTTTTAATTACAATGTCGAGGAAACAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTG
18882441 TACTGCCAGG
Statistics
Matches: 109, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
141 1 0.01
142 108 0.99
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (142 bp):
GTTGTAGCTTCAATCTGTTCCACTGCACCACCAGGGAAGTAAGACTCACCATTATGTGTTCAATC
TTTTTAATTACAATGTCGAGGAAACAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCATCG
CCAGGATTCGTC
Found at i:18885340 original size:9 final size:9
Alignment explanation
Indices: 18885321--18885353 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
18885311 ATGCAAAGCT
18885321 AATGC-ATG
1 AATGCAATG
18885329 AATGCAATG
1 AATGCAATG
*
18885338 AATGCCATG
1 AATGCAATG
18885347 AATGCAA
1 AATGCAA
18885354 AAGAAGAGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 5 0.23
9 17 0.77
ACGTcount: A:0.42, C:0.15, G:0.21, T:0.21
Consensus pattern (9 bp):
AATGCAATG
Found at i:18889252 original size:100 final size:100
Alignment explanation
Indices: 18889075--18889796 Score: 867
Period size: 100 Copynumber: 7.2 Consensus size: 100
18889065 ACCCCTGAGG
* * * *
18889075 TTGCAATTAAAAAGATTAAAGCCACAATGGTGAATCTTACTTCCCTGGCGGTGCAATGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGTCAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
* *
18889140 TTAAAGCTACAACGGCGAATCTTACTTCCCCGACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * * * * *
18889175 TTGCAATTAAAAAGGTTGAAGCCACAACAG-CAAGTCTTACTACCCTGGCAGTGTAGTGGAACAT
1 TTGCAATTAAAAAGATTGAAGCCACAACGGTCAA-TCTTACTTCCCTGGCGGTGCAGTGGAACAG
* * * *
18889239 ATTGAAGCAACAACGACAAATCTTGTTTCCCCGACA
65 ATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * *
18889275 TTGCAATTAGAAAGATTGAAGCCACAACGG-CGAATCTTACTTCCCTGACGGTGCAGTGGAACAA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGTC-AATCTTACTTCCCTGGCGGTGCAGTGGAACAG
* * **
18889339 ATTGAAGCTACAACGACGAATCTTGTTTCCCTAACA
65 ATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * * * *
18889375 TTGCAATTAAAAAGATTGAAGCCACAATGG-CGAGTCTTACTTCCCTTGCGGTACAGTGGGACAG
1 TTGCAATTAAAAAGATTGAAGCCACAACGGTC-AATCTTACTTCCCTGGCGGTGCAGTGGAACAG
* * * *
18889439 ATTGAAGCTATAACAGTGAATATTGCTTCCCCGACA
65 ATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * * * *
18889475 TTGTAATTAAAAAGATTGTAGCCGCAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGGACAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGTCAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
* * * *
18889540 TTGAAGCTATAACAGTGAATATTGCTTCCCCGACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * * * *
18889575 ATGTAATTAAAAAGATTGTAGCCGCAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGTCAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
*
18889640 TTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * * *
18889675 TTACAATTAAAAAGATTGAAGCCACAAC-GACGAATCTTACTTCCTTGGCGGTGCAGTGGAGCAG
1 TTGCAATTAAAAAGATTGAAGCCACAACGGTC-AATCTTACTTCCCTGGCGGTGCAGTGGAACAG
* ** *
18889739 ATTGAAGCAACAATAGCGAATCTTGCTTCCCCTACA
65 ATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* *
18889775 TTGCAGTTAAAAAGATTAAAGC
1 TTGCAATTAAAAAGATTGAAGC
18889797 TATAAACCAC
Statistics
Matches: 544, Mismatches: 74, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
99 3 0.01
100 539 0.99
101 2 0.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (100 bp):
TTGCAATTAAAAAGATTGAAGCCACAACGGTCAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
Found at i:18889741 original size:50 final size:50
Alignment explanation
Indices: 18889087--18889769 Score: 316
Period size: 50 Copynumber: 13.7 Consensus size: 50
18889077 GCAATTAAAA
* * ** *
18889087 AGATTAAAGCCACAATGGTGAATCTTACTTCCCTGGCGGTGCAATGGAAC
1 AGATTGAAGCCACAACGACGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * * * ** * ** *
18889137 AGATTAAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCCACAACGACGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * *
18889187 AGGTTGAAGCCACAAC-A-GCAAGTCTTACTACCCTGGCAGTGTAGTGGAAC
1 AGATTGAAGCCACAACGACG-AA-TCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * ** * * ** * *
18889237 ATATTGAAGCAACAACGACAAATCTTGTTTCCCCGACATTGCAATTAGAA-
1 AGATTGAAGCCACAACGACGAATCTTACTTCCCTGGCGGTGC-AGTGGAAC
* *
18889287 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGACGGTGCAGTGGAAC
1 AGATTGAAGCCACAACGACGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * ** ** ** * ** *
18889337 AAATTGAAGCTACAACGACGAATCTTGTTTCCCTAACATTGCAATTAAAA
1 AGATTGAAGCCACAACGACGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * * * *
18889387 AGATTGAAGCCACAATGGCGAGTCTTACTTCCCTTGCGGTACAGTGGGAC
1 AGATTGAAGCCACAACGACGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * * * * * ** * * ** *
18889437 AGATTGAAGCTATAAC-AGTGAATATTGCTTCCCCGACATTGTAATTAAAA
1 AGATTGAAGCCACAACGA-CGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * ** *
18889487 AGATTGTAGCCGCAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGGAC
1 AGATTGAAGCCACAACGACGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * * * * * ** * * ** *
18889537 AGATTGAAGCTATAAC-AGTGAATATTGCTTCCCCGACAATGTAATTAAAA
1 AGATTGAAGCCACAACGA-CGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * **
18889587 AGATTGTAGCCGCAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
1 AGATTGAAGCCACAACGACGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* ** * * * ** * * ** *
18889637 AGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTACAATTAAAA
1 AGATTGAAGCCACAACGACGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* *
18889687 AGATTGAAGCCACAACGACGAATCTTACTTCCTTGGCGGTGCAGTGGAGC
1 AGATTGAAGCCACAACGACGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * *
18889737 AGATTGAAGCAACAA-TAGCGAATCTTGCTTCCC
1 AGATTGAAGCCACAACGA-CGAATCTTACTTCCC
18889770 CTACATTGCA
Statistics
Matches: 444, Mismatches: 178, Indels: 22
0.69 0.28 0.03
Matches are distributed among these distances:
48 1 0.00
49 8 0.02
50 427 0.96
51 8 0.02
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (50 bp):
AGATTGAAGCCACAACGACGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
Found at i:18890242 original size:129 final size:129
Alignment explanation
Indices: 18889939--18891087 Score: 1457
Period size: 129 Copynumber: 8.9 Consensus size: 129
18889929 CATCCAGTCT
* * * * * *
18889939 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCCTATCTCTTTTAAGTTGCAGTG
1 TATCTCCCTAAAGTTACAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTAAAGTTGCAGTA
* * * * * * * *
18890004 GAGCAGA-CAAAAGAAACCAATCCTATCTCCCTAAAGTTACAGTGGAACAGATAGACAAAATAAA
66 GAGCAGATC----GCATCCAGTCTTATCTCCCTGAAGTTGCAGTGG---AG-CAGACAAAAGAAA
*
18890068 CGAATCC
123 CCAATCC
* * * *
18890075 TATCTCCCTAAAGTTGCAGTGGAGAGGATTAAAACCACAGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTAAAGTTACAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTAAAGTTGCAGTA
* * * * * * *
18890140 GAGCAGATCACATCCAGTCTTATCTCCCTGATGTTACAGTTGAGAAGAAAAAAGAAGCCAATCC
66 GAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCC
* * * * * *
18890204 TATCTCCCTGAAGTTACAGTGGAGAGGATGAAAGCCACAGATCTTATCTCTCTGAAGTTGTAGTA
1 TATCTCCCTAAAGTTACAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTAAAGTTGCAGTA
* * * * *
18890269 GAGCAGATCACATCCAGTCTTATCTTCCTGAAGTTGCAGCGGAGCAGATAAAAGAAACTAATCC
66 GAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCC
* *
18890333 TATCTCCCTAAAGTTATAGTGGAGCGGATTAAAACCACATATCTTATCTCTCTAAAGTTGCAGTA
1 TATCTCCCTAAAGTTACAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTAAAGTTGCAGTA
* *
18890398 GAGCAGATTGTATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCC
66 GAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCC
*
18890462 TATCTCCCTAAAG-TATCAGTGGAGCGGATTAAAACAACAGATCTTATCTCTCTAAAGTTGCAGT
1 TATCTCCCTAAAGTTA-CAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTAAAGTTGCAGT
18890526 AGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCC
65 AGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCC
*
18890591 TATCTCCCTAAAG-TATCAGTGGAGCGGATTAAAACAACAGATCTTATCTCTCTAAAGTTGCAGT
1 TATCTCCCTAAAGTTA-CAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTAAAGTTGCAGT
* *
18890655 AGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAAAAATCAATCC
65 AGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCC
* *
18890720 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAAATCTTATCTCTCTAAAGTTGCAGTA
1 TATCTCCCTAAAGTTACAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTAAAGTTGCAGTA
* * * * *
18890785 GAGCAAATCGCATCCAGTCTTATCTCCCCGAAGTTGTAGTGGAGCAGACAGAAGAAACCAAGCC
66 GAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCC
** * * * *
18890849 TATCTCCCTAAAGTTGTAGTAGAGTGGATTAAAATCACAGATCTTATCTATCTGAAA-TTGCAGT
1 TATCTCCCTAAAGTTACAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCT-AAAGTTGCAGT
* *
18890913 AGAGCTA-ATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAA-AAGCCAAT
65 AGAGC-AGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACA-AAAGAAACCAAT
*
18890976 TC
128 CC
* * ** * * * * **
18890978 TACCTCCCTGAAGTTGTAGTAGAG-TGATTAAAACCACAAAACTTATCTCTCTGCAGTTGCAGTA
1 TATCTCCCTAAAGTTACAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTAAAGTTGCAGTA
* * * *
18891042 GAGCAGATCGCATCTAGTCTTATCTCCCTAAAGATGTAGTGGAGCA
66 GAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCA
18891088 AACTGTTGAC
Statistics
Matches: 911, Mismatches: 94, Indels: 24
0.89 0.09 0.02
Matches are distributed among these distances:
127 2 0.00
128 74 0.08
129 734 0.81
130 10 0.01
133 25 0.03
136 65 0.07
137 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (129 bp):
TATCTCCCTAAAGTTACAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTAAAGTTGCAGTA
GAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCC
Found at i:18890293 original size:85 final size:85
Alignment explanation
Indices: 18889800--18891085 Score: 442
Period size: 85 Copynumber: 14.9 Consensus size: 85
18889790 TTAAAGCTAT
* ** * * ** *
18889800 AAACCACAAATCTTATCTCTTTGAAGTTGCAGTAGAACAGATCGTATCCAGTCCTATCTCCCTGA
1 AAACCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAATCCAGTCTTATCTCCCTGA
* * *
18889865 AGTTGTAGTGGAGTGGATTA
66 AGTTGCAGTGGAGAGGATGA
** * * * * **
18889885 AAACCACAGATCTTATCTCTTTGAACTTGCTGTAGAGAAGATCGCATCCAGTCTTATCTCCCTGA
1 AAACCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAATCCAGTCTTATCTCCCTGA
* *
18889950 AGTTGCAGTGGAGCGGATTA
66 AGTTGCAGTGGAGAGGATGA
* ** * * * *
18889970 AAACCACAGATCCTATCTCTTTTAAGTTGCAGTGGAGCAGA-CAAAAGAAACCAATCCTATCTCC
1 AAACCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC---A-AATCCAGTCTTATCTCC
* * *
18890034 CTAAAGTTACAGTGGA-ACAGATAGA
62 CTGAAGTTGCAGTGGAGA-GGAT-GA
** * * * * *
18890059 CAAAATAAACGAATCCTATCTCCCTAAAGTTGCAGTGGAG-AGGATTAAAACCACAGATCTTATC
1 -AAACCACA-G-ATCTTATCTCCCTGAAGTTGCAGTGGAGCA-GA-TCAAATC-CAG-TCTTATC
* * * *
18890123 TCTCTGAAGTTACAGTAGAGCA-GAT-C
59 TCCCTGAAGTTGCAGTGGAG-AGGATGA
* * * * * * ** * * *
18890149 ACATC-CAG-TCTTATCTCCCTGATGTTACAGTTGAGAAGAAAAAAGAAGCCAATCCTATCTCCC
1 AAACCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAG--ATCA-AATCCAGTCTTATCTCCC
*
18890212 TGAAGTTACAGTGGAGAGGATGA
63 TGAAGTTGCAGTGGAGAGGATGA
* * * * * *
18890235 AAGCCACAGATCTTATCTCTCTGAAGTTGTAGTAGAGCAGATCACATCCAGTCTTATCTTCCTGA
1 AAACCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAATCCAGTCTTATCTCCCTGA
*
18890300 AGTTGCAGCGGAGCA-GAT-A
66 AGTTGCAGTGGAG-AGGATGA
** * * ** * * * *
18890319 AAAGAAACTA-ATCCTATCTCCCTAAAGTTATAGTGGAGCGGATTAAAACCACATATCTTATCTC
1 AAA-CCAC-AGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TCAAATC-CA-GTCTTATCTC
* * *
18890383 TCTAAAGTTGCAGTAGAGCA-GATTG-
61 CCTGAAGTTGCAGTGGAG-AGGA-TGA
* * * * *
18890408 -TATC-CAG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CAAAAGAAACCAATCCTATCTCC
1 AAACCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC---A-AATCCAGTCTTATCTCC
* * *
18890469 CTAAAGTAT-CAGTGGAGCGGATTA
62 CTGAAGT-TGCAGTGGAGAGGATGA
* * * * **
18890493 AAACAACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGA
1 AAACCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAATCCAGTCTTATCTCCCTGA
*
18890558 AGTTGCAGTGGAGCA-GA-CA
66 AGTTGCAGTGGAG-AGGATGA
** * * * * *
18890577 AAAGAAACCA-ATCCTATCTCCCTAAAGTAT-CAGTGGAGCGGATTAAAACAACAGATCTTATCT
1 AAA-CCA-CAGATCTTATCTCCCTGAAGT-TGCAGTGGAGCAGATCAAATC--CAG-TCTTATCT
* * *
18890640 CTCTAAAGTTGCAGTAGAGCA-GATCG-
60 CCCTGAAGTTGCAGTGGAG-AGGAT-GA
* * * *
18890666 -CATC-CAG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CAAAAAAAAT-CAATCCTATCTC
1 AAACCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC-----AAATCCAGTCTTATCTC
* * *
18890726 CCTGAAGTTACAGTGGAGCGGATTA
61 CCTGAAGTTGCAGTGGAGAGGATGA
* * * * * ** *
18890751 AAACCACAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAAATCGCATCCAGTCTTATCTCCCCGA
1 AAACCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAATCCAGTCTTATCTCCCTGA
* *
18890816 AGTTGTAGTGGAGCA-GACAGAA
66 AGTTGCAGTGGAG-AGGA-TG-A
* * * * ** * **
18890838 GAAACCA-AG--CCTATCTCCCTAAAGTTGTAGTAGAGTGGATTAAAATCACAGATCTTATCTAT
1 -AAACCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TCAAATC-CAG-TCTTATCTCC
* *
18890900 CTGAAATTGCAGT--AGA-GCT--
62 CTGAAGTTGCAGTGGAGAGGATGA
* * * *
18890919 AATCGCATCTAG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CAGAAAAAGCCAAT-TCTAC
1 AAAC-CA-C-AGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC----AAATCCAGTCT-TAT
* *
18890981 CTCCCTGAAGTTGTAGT--AGAGTGATTA
58 CTCCCTGAAGTTGCAGTGGAGAG-GATGA
* * * * * ** * *
18891008 AAACCACAAAACTTATCTCTCTGCAGTTGCAGTAGAGCAGATCGCATCTAGTCTTATCTCCCTAA
1 AAACCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAATCCAGTCTTATCTCCCTGA
* *
18891073 AGATGTAGTGGAG
66 AGTTGCAGTGGAG
18891086 CAAACTGTTG
Statistics
Matches: 894, Mismatches: 213, Indels: 187
0.69 0.16 0.14
Matches are distributed among these distances:
80 3 0.00
81 2 0.00
84 38 0.04
85 481 0.54
86 39 0.04
87 60 0.07
88 193 0.22
89 12 0.01
90 8 0.01
91 5 0.01
92 52 0.06
94 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (85 bp):
AAACCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAATCCAGTCTTATCTCCCTGA
AGTTGCAGTGGAGAGGATGA
Found at i:18890897 original size:44 final size:44
Alignment explanation
Indices: 18889854--18890961 Score: 472
Period size: 44 Copynumber: 25.6 Consensus size: 44
18889844 TATCCAGTCC
* * ** *
18889854 TATCTCCCTGAAGTTGTAGTGGAGTGGATTAAAACCACAGATCT
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAATCACAGATCT
** * * * * * ***
18889898 TATCTCTTTGAACTTGCTGTAGAGAAGA-TCGCATC-CAG-TCT
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAATCACAGATCT
* * * *
18889939 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCC
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAATCACAGATCT
** * * ** *
18889983 TATCTCTTTTAAGTTGCAGTGGAGCAGA-CAAAAGAAACCA-ATCC
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAA-TCA-CAGATCT
* * * * *
18890027 TATCTCCCTAAAGTTACAGTGGAACAGATAGACAAAAT-AAACGAATCC
1 TATCTCCCTAAAGTTGCAGTGGAGCAGAT---TAAAATCACA-G-ATCT
*
18890075 TATCTCCCTAAAGTTGCAGTGGAG-AGGATTAAAACCACAGATCT
1 TATCTCCCTAAAGTTGCAGTGGAGCA-GATTAAAATCACAGATCT
* * * * * *
18890119 TATCTCTCTGAAGTTACAGTAGAGCAGA-TCACATC-CAG-TCT
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAATCACAGATCT
* * * * * * ** *
18890160 TATCTCCCTGATGTTACAGTTGAGAAGA-AAAAAGAAGCCA-ATCC
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAATCA--CAGATCT
* * * **
18890204 TATCTCCCTGAAGTTACAGTGGAG-AGGATGAAAGCCACAGATCT
1 TATCTCCCTAAAGTTGCAGTGGAGCA-GATTAAAATCACAGATCT
* * * * * *
18890248 TATCTCTCTGAAGTTGTAGTAGAGCAGA-TCACATC-CAG-TCT
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAATCACAGATCT
* * * ** *
18890289 TATCTTCCTGAAGTTGCAGCGGAGCAGA-TAAAAGAAACTA-ATCC
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAA-TCAC-AGATCT
** * * *
18890333 TATCTCCCTAAAGTTATAGTGGAGCGGATTAAAACCACATATCT
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAATCACAGATCT
* * **
18890377 TATCTCTCTAAAGTTGCAGTAGAGCAGATT-GTATC-CAG-TCT
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAATCACAGATCT
* * ** *
18890418 TATCTCCCTGAAGTTGCAGTGGAGCAGA-CAAAAGAAACCA-ATCC
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAA-TCA-CAGATCT
*
18890462 TATCTCCCTAAAGTAT-CAGTGGAGCGGATTAAAA-CAACAGATCT
1 TATCTCCCTAAAGT-TGCAGTGGAGCAGATTAAAATC-ACAGATCT
* * ***
18890506 TATCTCTCTAAAGTTGCAGTAGAGCAGA-TCGCATC-CAG-TCT
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAATCACAGATCT
* * ** *
18890547 TATCTCCCTGAAGTTGCAGTGGAGCAGA-CAAAAGAAACCA-ATCC
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAA-TCA-CAGATCT
*
18890591 TATCTCCCTAAAGTAT-CAGTGGAGCGGATTAAAA-CAACAGATCT
1 TATCTCCCTAAAGT-TGCAGTGGAGCAGATTAAAATC-ACAGATCT
* * ***
18890635 TATCTCTCTAAAGTTGCAGTAGAGCAGA-TCGCATC-CAG-TCT
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAATCACAGATCT
* ** ** *
18890676 TATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAAAAATCA-ATCC
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAATCA-CAGATCT
* * * * *
18890720 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAAATCT
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAATCACAGATCT
* * * ***
18890764 TATCTCTCTAAAGTTGCAGTAGAGCA-AATCGCATC-CAG-TCT
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAATCACAGATCT
** * ** * * *
18890805 TATCTCCCCGAAGTTGTAGTGGAGCAGACAGAAGAAAC-CA-AGCC
1 TATCTCCCTAAAGTTGCAGTGGAGCAGA-TTAA-AATCACAGATCT
* * **
18890849 TATCTCCCTAAAGTTGTAGTAGAGTGGATTAAAATCACAGATCT
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAATCACAGATCT
** * *** *
18890893 TATCTATCTGAAA-TTGCAGTAGAGCTA-A-TCGCATC-TAG-TCT
1 TATCTCCCT-AAAGTTGCAGTGGAGC-AGATTAAAATCACAGATCT
*
18890934 TATCTCCCTGAAGTTGCAGTGGAGCAGA
1 TATCTCCCTAAAGTTGCAGTGGAGCAGA
18890962 CAGAAAAAGC
Statistics
Matches: 790, Mismatches: 209, Indels: 133
0.70 0.18 0.12
Matches are distributed among these distances:
40 3 0.00
41 214 0.27
42 29 0.04
43 48 0.06
44 426 0.54
45 32 0.04
46 3 0.00
47 1 0.00
48 34 0.04
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (44 bp):
TATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAATCACAGATCT
Found at i:18893098 original size:23 final size:24
Alignment explanation
Indices: 18893059--18893104 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
18893049 TACTATTATT
*
18893059 TTTTATTTTTTTGTTTATATTTTG
1 TTTTATTTTATTGTTTATATTTTG
18893083 TTTTATTTTATT-TTTATATTTT
1 TTTTATTTTATTGTTTATATTTT
18893105 ACTATCTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.15, C:0.00, G:0.04, T:0.80
Consensus pattern (24 bp):
TTTTATTTTATTGTTTATATTTTG
Found at i:18900232 original size:50 final size:50
Alignment explanation
Indices: 18900174--18900661 Score: 352
Period size: 50 Copynumber: 9.8 Consensus size: 50
18900164 CATTGCAATT
* * *
18900174 AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCTTGGCGGTATAGTG
1 AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGTAGTG
* * * * * * * * *
18900224 AAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGTAATT
1 AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGTAGTG
* * * *
18900274 AAAAAGATTGAAGCCACAAAGGTGAATCTTACTTCCCTGGCGGTGCAGTGG
1 AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGTAGT-G
* * * * ** * ** * ** * *
18900325 AACAA-ATTGAAGCTACAACAGTGAATCTTGTTTCGCTAACATTACAATT
1 AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGTAGTG
* *
18900374 AAAAAGATTGAAGCCACAACGGC-AAGTCTTACTTCCCTGGCAATATAGTG
1 AAAAAGATTGAAGCCACAACGGCGAA-TCTTACTTCCCTGGCAGTGTAGTG
* * * ** * * * * *
18900424 GAATAGATTGAAGCTACAACGGCGAATCTTGTTTCCCTGACATTGCAATT
1 AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGTAGTG
* * * * * *
18900474 AAAAATATTGAAGCCACAACAGTGAGTTTTAATTCCCTGG-AGGTGTAGTG
1 AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCA-GTGTAGTG
* * * * * * * * * *
18900524 GAATAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATT
1 AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGTAGTG
* *
18900574 AAAAAGATTGAAGCCACAACGGCGAGTCTTACTTCTCTGGCAGTGTAGTG
1 AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGTAGTG
* * * *
18900624 GAACAGATTGAAGCTACAACAGCGAATCTTACTTCCCT
1 AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
18900662 AACATTACAG
Statistics
Matches: 322, Mismatches: 110, Indels: 12
0.73 0.25 0.03
Matches are distributed among these distances:
49 7 0.02
50 308 0.96
51 7 0.02
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (50 bp):
AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGTAGTG
Found at i:18900667 original size:100 final size:100
Alignment explanation
Indices: 18900164--18900667 Score: 668
Period size: 100 Copynumber: 5.0 Consensus size: 100
18900154 ATCTCTTTGG
* * * * *
18900164 CATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCTTGGCGGTATAGTGAAACA
1 CATTGCAATTAAAAAGATTGAAGCCACAACGGCGAGTCTTACTTCCCTGGCAGTGTAGTGGAACA
* *
18900229 GATTGAAGCTACAACGGTGAATCTTGCTTCCCCGA
66 GATTGAAGCTACAACGGCGAATCTTGCTTCCCTGA
* * * * * *
18900264 CATTGTAATTAAAAAGATTGAAGCCACAAAGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACA
1 CATTGCAATTAAAAAGATTGAAGCCACAACGGCGAGTCTTACTTCCCTGGCAGTGTAGTGGAACA
* * * * * *
18900329 AATTGAAGCTACAACAGTGAATCTTGTTTCGCTAA
66 GATTGAAGCTACAACGGCGAATCTTGCTTCCCTGA
* * * * *
18900364 CATTACAATTAAAAAGATTGAAGCCACAACGGCAAGTCTTACTTCCCTGGCAATATAGTGGAATA
1 CATTGCAATTAAAAAGATTGAAGCCACAACGGCGAGTCTTACTTCCCTGGCAGTGTAGTGGAACA
*
18900429 GATTGAAGCTACAACGGCGAATCTTGTTTCCCTGA
66 GATTGAAGCTACAACGGCGAATCTTGCTTCCCTGA
* * * * * *
18900464 CATTGCAATTAAAAATATTGAAGCCACAACAGTGAGTTTTAATTCCCTGG-AGGTGTAGTGGAAT
1 CATTGCAATTAAAAAGATTGAAGCCACAACGGCGAGTCTTACTTCCCTGGCA-GTGTAGTGGAAC
*
18900528 AGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGA
65 AGATTGAAGCTACAACGGCGAATCTTGCTTCCCTGA
*
18900564 CATTGCAATTAAAAAGATTGAAGCCACAACGGCGAGTCTTACTTCTCTGGCAGTGTAGTGGAACA
1 CATTGCAATTAAAAAGATTGAAGCCACAACGGCGAGTCTTACTTCCCTGGCAGTGTAGTGGAACA
* * *
18900629 GATTGAAGCTACAACAGCGAATCTTACTTCCCTAA
66 GATTGAAGCTACAACGGCGAATCTTGCTTCCCTGA
18900664 CATT
1 CATT
18900668 ACAGTCAATT
Statistics
Matches: 351, Mismatches: 51, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
99 1 0.00
100 349 0.99
101 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26
Consensus pattern (100 bp):
CATTGCAATTAAAAAGATTGAAGCCACAACGGCGAGTCTTACTTCCCTGGCAGTGTAGTGGAACA
GATTGAAGCTACAACGGCGAATCTTGCTTCCCTGA
Found at i:18900848 original size:45 final size:44
Alignment explanation
Indices: 18900799--18900898 Score: 119
Period size: 45 Copynumber: 2.2 Consensus size: 44
18900789 TATCCTCCTA
* * * *
18900799 AAGTTGCAGTGGGGCAAACTGAAGATAGCGAGTCTTGTCTCCCTG
1 AAGTTGCAGTGGAGCAAACTGAAGATA-CGAATCCTATCTCCCTG
* * **
18900844 AAGTTGCAGTGGAGCAGACTGAAGCTATTAATCCTATCTCCCTG
1 AAGTTGCAGTGGAGCAAACTGAAGATACGAATCCTATCTCCCTG
18900888 AAGTTGCAGTG
1 AAGTTGCAGTG
18900899 AAGTGGATTA
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 23 0.49
45 24 0.51
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (44 bp):
AAGTTGCAGTGGAGCAAACTGAAGATACGAATCCTATCTCCCTG
Found at i:18900898 original size:44 final size:44
Alignment explanation
Indices: 18900836--18901124 Score: 178
Period size: 44 Copynumber: 6.6 Consensus size: 44
18900826 GCGAGTCTTG
*
18900836 TCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGCTATTAATCCTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTATTAATCCTA
* ** * * * * *
18900880 TCTCCCTGAAGTTGCAGTGAAGTGGATTAAAACGATGAATCATA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTATTAATCCTA
* * * * * *
18900924 TAC-CTCTAAAGTTGCAGTAGAGCAGA-T-CA--TATCAAACCTTA
1 T-CTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTATTAATCC-TA
* ** * * * *
18900965 TCTCTCTGAAGTTGCAGTAAAGTAGGTTGAAG-TAATAAACCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTATTAATCC-TA
* * * * * * * *
18901009 TCTCCCTAAAGTCGCAGTGAAGCGGGTTGAAGATA-CAAGTCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTATTAA-TCCTA
* * *
18901053 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGCTACTAATCCTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTATTAATCCTA
* *
18901097 CCTCCTTGAAGTTGCAGTGGAGCAGATT
1 TCTCCCTGAAGTTGCAGTGGAGCAGATT
18901125 AACACAATGA
Statistics
Matches: 187, Mismatches: 49, Indels: 18
0.74 0.19 0.07
Matches are distributed among these distances:
40 6 0.03
41 22 0.12
42 2 0.01
43 2 0.01
44 149 0.80
45 6 0.03
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (44 bp):
TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTATTAATCCTA
Found at i:18903247 original size:21 final size:21
Alignment explanation
Indices: 18903200--18903249 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 21
18903190 CATTTATTTA
18903200 TTTATTTATTCATATGTTCAT
1 TTTATTTATTCATATGTTCAT
18903221 TATTATTT-TT-ATATGCTTCAGT
1 T-TTATTTATTCATATG-TTCA-T
18903243 TTTATTT
1 TTTATTT
18903250 GTTTATTTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
20 5 0.19
21 13 0.50
22 8 0.31
ACGTcount: A:0.22, C:0.08, G:0.06, T:0.64
Consensus pattern (21 bp):
TTTATTTATTCATATGTTCAT
Found at i:18915025 original size:23 final size:23
Alignment explanation
Indices: 18914999--18915046 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
18914989 TTTAATTACA
18914999 CATTCATATCGTGAAAAGAATTT
1 CATTCATATCGTGAAAAGAATTT
18915022 CATTCATATCGTGAAAAGAATTT
1 CATTCATATCGTGAAAAGAATTT
18915045 CA
1 CA
18915047 CAATCTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (23 bp):
CATTCATATCGTGAAAAGAATTT
Found at i:18915521 original size:60 final size:60
Alignment explanation
Indices: 18915450--18915578 Score: 179
Period size: 60 Copynumber: 2.1 Consensus size: 60
18915440 AAGGGTACCA
* * * *
18915450 AAGTGCGAACAGGGCCATAGACGTGCAAATAGGGACACCGAAGTGTATACA-AGACCACCG
1 AAGTGCAAACAGGGCCACAGACGTGCAAATAGAGACACCAAAGTGTATACAGAGA-CACCG
* *
18915510 AAGTGCAAACAGGGGCACAGATGTGCAAATAGAGACACCAAAGTGTATACAGAGACACCG
1 AAGTGCAAACAGGGCCACAGACGTGCAAATAGAGACACCAAAGTGTATACAGAGACACCG
*
18915570 AAGTACAAA
1 AAGTGCAAA
18915579 TAAATTAGTG
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
60 58 0.95
61 3 0.05
ACGTcount: A:0.41, C:0.21, G:0.26, T:0.12
Consensus pattern (60 bp):
AAGTGCAAACAGGGCCACAGACGTGCAAATAGAGACACCAAAGTGTATACAGAGACACCG
Found at i:18921831 original size:20 final size:21
Alignment explanation
Indices: 18921782--18921833 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 21
18921772 AAATCATTGC
18921782 AATATATGT-AAAAATAATTT
1 AATATATGTAAAAAATAATTT
* *
18921802 AA-A-ATATAAAAAATTA-TT
1 AATATATGTAAAAAATAATTT
18921820 AATATATGTAAAAA
1 AATATATGTAAAAA
18921834 CAACTTTTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
18 7 0.27
19 9 0.35
20 10 0.38
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.35
Consensus pattern (21 bp):
AATATATGTAAAAAATAATTT
Found at i:18921832 original size:18 final size:19
Alignment explanation
Indices: 18921782--18921832 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 19
18921772 AAATCATTGC
18921782 AATATATGTAAAAATAATTT
1 AATATATGT-AAAATAATTT
* ** *
18921802 AAAATATAAAAAATTA-TT
1 AATATATGTAAAATAATTT
18921820 AATATATGTAAAA
1 AATATATGTAAAA
18921833 ACAACTTTTT
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
18 12 0.50
19 6 0.25
20 6 0.25
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (19 bp):
AATATATGTAAAATAATTT
Found at i:18921929 original size:14 final size:15
Alignment explanation
Indices: 18921907--18921983 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
18921897 CAATCAAACA
18921907 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
18921921 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
18921936 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
18921956 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
18921970 ACGGAAAAT-ATTTT
1 CCAGAAAATCATTTT
18921984 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 21 0.42
15 15 0.30
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:18921948 original size:20 final size:20
Alignment explanation
Indices: 18921923--18921962 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
18921913 AATATTTTCC
*
18921923 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
18921943 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
18921963 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:18921968 original size:34 final size:35
Alignment explanation
Indices: 18921911--18921977 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
18921901 CAAACACCAG
*
18921911 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
18921946 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
18921978 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:18927643 original size:23 final size:23
Alignment explanation
Indices: 18927600--18927653 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
18927590 TAGTTTAATC
* *
18927600 AAATAAATTATTAAAAGAATATA
1 AAATAAAATATTAAAAGAATAGA
18927623 AAATGAAAATATTAAAA-AATAGA
1 AAAT-AAAATATTAAAAGAATAGA
18927646 AAA-AAAAT
1 AAATAAAAT
18927654 CAATTCAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 5 0.18
23 12 0.43
24 11 0.39
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (23 bp):
AAATAAAATATTAAAAGAATAGA
Found at i:18935721 original size:20 final size:22
Alignment explanation
Indices: 18935682--18935724 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
18935672 TTCCTATTTT
18935682 ATTTTTTATTATGAATTTGTCA
1 ATTTTTTATTATGAATTTGTCA
*
18935704 ATTTTTTCTTA-GAA-TTGTCA
1 ATTTTTTATTATGAATTTGTCA
18935724 A
1 A
18935725 AAATGTGCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 7 0.35
21 3 0.15
22 10 0.50
ACGTcount: A:0.28, C:0.07, G:0.09, T:0.56
Consensus pattern (22 bp):
ATTTTTTATTATGAATTTGTCA
Found at i:18940482 original size:11 final size:11
Alignment explanation
Indices: 18940466--18940499 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
18940456 TATATCATAA
18940466 ATTATAAATAT
1 ATTATAAATAT
18940477 ATTATAAATA-
1 ATTATAAATAT
*
18940487 ATTAAAAATAT
1 ATTATAAATAT
18940498 AT
1 AT
18940500 ATTAAATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
ATTATAAATAT
Found at i:18940507 original size:18 final size:20
Alignment explanation
Indices: 18940462--18940509 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 20
18940452 TTTATATATC
*
18940462 ATAAATTATAAATATATTAT
1 ATAAATTAAAAATATATTAT
*
18940482 AAATAATTAAAAATATA-TAT
1 ATA-AATTAAAAATATATTAT
18940502 -TAAATTAA
1 ATAAATTAA
18940510 GTTTGTTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 6 0.25
19 1 0.04
20 5 0.21
21 12 0.50
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
ATAAATTAAAAATATATTAT
Found at i:18947092 original size:2 final size:2
Alignment explanation
Indices: 18947087--18947248 Score: 324
Period size: 2 Copynumber: 81.0 Consensus size: 2
18947077 GATATATATA
18947087 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
18947129 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
18947171 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
18947213 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
18947249 AAATGAAATG
Statistics
Matches: 160, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 160 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:18947609 original size:18 final size:18
Alignment explanation
Indices: 18947586--18947628 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
18947576 CTTAATGTTG
18947586 AAATGGCAAAT-GAATGAA
1 AAATGG-AAATGGAATGAA
*
18947604 AAATGGAAATGGAATGAG
1 AAATGGAAATGGAATGAA
18947622 AAATGGA
1 AAATGGA
18947629 GTACTCAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.53, C:0.02, G:0.28, T:0.16
Consensus pattern (18 bp):
AAATGGAAATGGAATGAA
Found at i:18950027 original size:13 final size:13
Alignment explanation
Indices: 18950009--18950036 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
18949999 ACAAGGCCCT
18950009 ATACATAAGATTG
1 ATACATAAGATTG
18950022 ATACATAAGATTG
1 ATACATAAGATTG
18950035 AT
1 AT
18950037 GCCATAATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.07, G:0.14, T:0.32
Consensus pattern (13 bp):
ATACATAAGATTG
Found at i:18957535 original size:38 final size:38
Alignment explanation
Indices: 18957484--18957573 Score: 135
Period size: 38 Copynumber: 2.4 Consensus size: 38
18957474 TGAATCATAC
* *
18957484 TGTTATTCAGGCTTTGTGCCTAGCAAGCTTAGTGTCGG
1 TGTTATTCAGGCTTTGTGCCTAGCAAGCTTAATGCCGG
**
18957522 TGTTATTCAGGCTTTGTGCCTAGCTGGCTTAATGCCGG
1 TGTTATTCAGGCTTTGTGCCTAGCAAGCTTAATGCCGG
*
18957560 TGTTATTCAAGCTT
1 TGTTATTCAGGCTT
18957574 ATTGCTGGTG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.16, C:0.19, G:0.27, T:0.39
Consensus pattern (38 bp):
TGTTATTCAGGCTTTGTGCCTAGCAAGCTTAATGCCGG
Found at i:18959682 original size:9 final size:9
Alignment explanation
Indices: 18959668--18959715 Score: 51
Period size: 9 Copynumber: 5.2 Consensus size: 9
18959658 ATTTTAAAAC
18959668 GAGAGAGTT
1 GAGAGAGTT
*
18959677 GAGAGACTT
1 GAGAGAGTT
* *
18959686 GAAAGGGTTT
1 GAGAGAG-TT
18959696 GAGAGAGTT
1 GAGAGAGTT
*
18959705 GCGAGAGTT
1 GAGAGAGTT
18959714 GA
1 GA
18959716 AAGATGGATG
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
9 23 0.77
10 7 0.23
ACGTcount: A:0.31, C:0.04, G:0.42, T:0.23
Consensus pattern (9 bp):
GAGAGAGTT
Found at i:18959949 original size:29 final size:29
Alignment explanation
Indices: 18959917--18959972 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
18959907 TTTAAAACTA
*
18959917 ACCTAAAGA-ACTAATTAATTAAAAAAACG
1 ACCTAAA-ACACTAATTAATAAAAAAAACG
*
18959946 ACCTAAAACCCTAATTAATAAAAAAAA
1 ACCTAAAACACTAATTAATAAAAAAAA
18959973 ATTCTATACG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 1 0.04
29 23 0.96
ACGTcount: A:0.61, C:0.16, G:0.04, T:0.20
Consensus pattern (29 bp):
ACCTAAAACACTAATTAATAAAAAAAACG
Found at i:18962701 original size:21 final size:20
Alignment explanation
Indices: 18962677--18962727 Score: 57
Period size: 22 Copynumber: 2.5 Consensus size: 20
18962667 ATCAAAACCT
*
18962677 AAAACCCAAAATTTAAAATTC
1 AAAACCCAAAATTGAAAA-TC
*
18962698 AAAATCCAAAAATTGAAAATC
1 AAAA-CCCAAAATTGAAAATC
*
18962719 AAGACCCAA
1 AAAACCCAA
18962728 TAAAAATATA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 4 0.16
21 9 0.36
22 12 0.48
ACGTcount: A:0.59, C:0.20, G:0.04, T:0.18
Consensus pattern (20 bp):
AAAACCCAAAATTGAAAATC
Found at i:18974523 original size:24 final size:23
Alignment explanation
Indices: 18974496--18974571 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 23
18974486 AGATATTTAT
*
18974496 ATTATTTATTTATATAATATATAA
1 ATTAATTATTTATATAATAT-TAA
** *
18974520 ATTAATTATAAAGTATATTATTAA
1 ATTAATTATTTA-TATAATATTAA
*
18974544 ATTAATTATATTATA-AATATTAT
1 ATTAATTAT-TTATATAATATTAA
18974567 ATTAA
1 ATTAA
18974572 GAAATAAATT
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
23 11 0.26
24 23 0.55
25 8 0.19
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (23 bp):
ATTAATTATTTATATAATATTAA
Found at i:18974539 original size:12 final size:11
Alignment explanation
Indices: 18974510--18974553 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 11
18974500 TTTATTTATA
18974510 TAATATATAAAT
1 TAAT-TATAAAT
*
18974522 TAATTATAAAG
1 TAATTATAAAT
18974533 TATATTATTAAAT
1 TA-ATTA-TAAAT
18974546 TAATTATA
1 TAATTATA
18974554 TTATAAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
11 10 0.36
12 12 0.43
13 6 0.21
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (11 bp):
TAATTATAAAT
Found at i:18974565 original size:14 final size:17
Alignment explanation
Indices: 18974533--18974570 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 17
18974523 AATTATAAAG
18974533 TATATTATTAAATTAAT
1 TATATTATTAAATTAAT
18974550 TATATTA-TAAA-T-AT
1 TATATTATTAAATTAAT
18974564 TATATTA
1 TATATTA
18974571 AGAAATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 9 0.43
15 1 0.05
16 4 0.19
17 7 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TATATTATTAAATTAAT
Found at i:18974803 original size:15 final size:17
Alignment explanation
Indices: 18974785--18974816 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
18974775 CAGAATAGAA
18974785 AGAA-CAAA-GAAACAG
1 AGAAGCAAACGAAACAG
18974800 AGAAGCAAACGAAACAG
1 AGAAGCAAACGAAACAG
18974817 GGGAAGAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.27
16 4 0.27
17 7 0.47
ACGTcount: A:0.62, C:0.16, G:0.22, T:0.00
Consensus pattern (17 bp):
AGAAGCAAACGAAACAG
Found at i:18975498 original size:3 final size:3
Alignment explanation
Indices: 18975490--18975518 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
18975480 TAAGTATAAG
18975490 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
18975519 GTGAGATTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:18975816 original size:25 final size:25
Alignment explanation
Indices: 18975750--18975825 Score: 75
Period size: 25 Copynumber: 3.0 Consensus size: 25
18975740 ATTGGTATTG
* * *
18975750 AAAG-GAATATTGACTTGAAAATGGA
1 AAAGTGAA-ATTGAATTGAAAGTGAA
*
18975775 AAAGTG-AATTGTGATTGAAAGTGAA
1 AAAGTGAAATTG-AATTGAAAGTGAA
18975800 AAAGTGAAATTGAATTGAAATGTGAA
1 AAAGTGAAATTGAATTGAAA-GTGAA
18975826 TTTGGAGACC
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
24 4 0.10
25 27 0.64
26 11 0.26
ACGTcount: A:0.47, C:0.01, G:0.25, T:0.26
Consensus pattern (25 bp):
AAAGTGAAATTGAATTGAAAGTGAA
Found at i:18976016 original size:37 final size:39
Alignment explanation
Indices: 18975957--18976052 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
18975947 CGGATAGTTT
* * * *
18975957 CGATGAGGTACTGGGTACCAACT-TT-CTTCGGA-TTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
18975994 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
18976033 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
18976053 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 25 0.52
40 2 0.04
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:18977838 original size:14 final size:16
Alignment explanation
Indices: 18977806--18977838 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
18977796 TGTAAGAAAT
*
18977806 AAAATATTTATGTTAA
1 AAAATATATATGTTAA
18977822 AAAATATATAT-TTAA
1 AAAATATATATGTTAA
18977837 AA
1 AA
18977839 TGATGTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
AAAATATATATGTTAA
Found at i:18977983 original size:20 final size:20
Alignment explanation
Indices: 18977958--18978009 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
18977948 ATGAATTGTT
*
18977958 TATAAAATTTAATTTAAATA
1 TATAAAATATAATTTAAATA
*
18977978 TATAAAATATATTTTAAAT-
1 TATAAAATATAATTTAAATA
*
18977997 TTTAAAA-ATAATT
1 TATAAAATATAATT
18978010 ATTACAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 5 0.18
19 6 0.21
20 17 0.61
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
TATAAAATATAATTTAAATA
Found at i:18994593 original size:50 final size:50
Alignment explanation
Indices: 18994469--18994717 Score: 311
Period size: 50 Copynumber: 4.8 Consensus size: 50
18994459 GATAATAACA
* ** * *
18994469 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCAT-CTCGG
* * *
18994520 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
18994570 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
18994620 TGCCCATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATGATCTCAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC--GG
*
18994675 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
18994718 TTACCCAAAT
Statistics
Matches: 173, Mismatches: 18, Indels: 9
0.87 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 93 0.54
51 33 0.19
53 4 0.02
55 2 0.01
56 40 0.23
ACGTcount: A:0.20, C:0.30, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:18994647 original size:100 final size:103
Alignment explanation
Indices: 18994468--18994717 Score: 355
Period size: 100 Copynumber: 2.4 Consensus size: 103
18994458 TGATAATAAC
**
18994468 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
*
18994533 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATCTC-GG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTCAGG
* *
18994570 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
*
18994633 TCCCAGACATGGTCTTACATGGGACCTCTCATGATCTCAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTC-AGG
* *
18994675 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
18994718 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 49 0.37
101 36 0.27
103 5 0.04
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.30, G:0.24, T:0.26
Consensus pattern (103 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTCAGG
Found at i:18994833 original size:13 final size:13
Alignment explanation
Indices: 18994812--18994842 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
18994802 GCTTAGATCA
*
18994812 TCATCAAATAAAT
1 TCATAAAATAAAT
18994825 TCATAAAATAAAT
1 TCATAAAATAAAT
18994838 TCATA
1 TCATA
18994843 GTTGCTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:18995105 original size:29 final size:31
Alignment explanation
Indices: 18995055--18995112 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
18995045 TCTCGACTCT
* *
18995055 AACTTTTTCAAAATTATGA-TTTTGCCCCTA
1 AACTTTTGCAAAATTATCATTTTTGCCCCTA
*
18995085 AACTTTTGCATAATTA-CATTTTTGCCCC
1 AACTTTTGCAAAATTATCATTTTTGCCCC
18995113 AAGGCTCAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.28, C:0.22, G:0.07, T:0.43
Consensus pattern (31 bp):
AACTTTTGCAAAATTATCATTTTTGCCCCTA
Found at i:19007559 original size:18 final size:20
Alignment explanation
Indices: 19007536--19007575 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
19007526 AGAAGGATGT
*
19007536 AATTGAGG-TCGA-TTTTGA
1 AATTGAGGCTCAATTTTTGA
19007554 AATTGAGGCTCAATTTTTGA
1 AATTGAGGCTCAATTTTTGA
19007574 AA
1 AA
19007576 GTTATAGCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 3 0.16
20 8 0.42
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.38
Consensus pattern (20 bp):
AATTGAGGCTCAATTTTTGA
Found at i:19011904 original size:49 final size:49
Alignment explanation
Indices: 19011851--19011953 Score: 140
Period size: 49 Copynumber: 2.1 Consensus size: 49
19011841 AAAGATGGCA
* *
19011851 TTCAATATATGA-ATAT-TCTACCATCCCAGATAGC-CTGACAACGATTGTT
1 TTCAATATA-GACATATCT-TACCATCCCAGATAGCTC-GACAACAATGGTT
19011900 TTCAATATAGACATATCTTACCATCCCAGATAGCTCGACAACAATGGTT
1 TTCAATATAGACATATCTTACCATCCCAGATAGCTCGACAACAATGGTT
19011949 TTCAA
1 TTCAA
19011954 CTTAAGGGCT
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
48 2 0.04
49 45 0.92
50 2 0.04
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.31
Consensus pattern (49 bp):
TTCAATATAGACATATCTTACCATCCCAGATAGCTCGACAACAATGGTT
Found at i:19015572 original size:41 final size:41
Alignment explanation
Indices: 19015515--19015627 Score: 156
Period size: 41 Copynumber: 2.8 Consensus size: 41
19015505 TTATATAAAA
* *
19015515 CACCGGCATAAAGCCTGCTAGACACAAAGTCC-GATACATTT
1 CACCGGCACAGAGCCTGCTAGACACAAAG-CCTGATACATTT
* *
19015556 CACCGGCACAGAGCCTGCTAGGCATAAAGCCTGATACATTT
1 CACCGGCACAGAGCCTGCTAGACACAAAGCCTGATACATTT
* *
19015597 CACCGGCACAGAGCCTGCTAGGCATAAAGCC
1 CACCGGCACAGAGCCTGCTAGACACAAAGCC
19015628 CAAACTTACA
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
40 2 0.03
41 65 0.97
ACGTcount: A:0.31, C:0.31, G:0.21, T:0.17
Consensus pattern (41 bp):
CACCGGCACAGAGCCTGCTAGACACAAAGCCTGATACATTT
Found at i:19015900 original size:96 final size:97
Alignment explanation
Indices: 19015734--19015975 Score: 423
Period size: 96 Copynumber: 2.5 Consensus size: 97
19015724 TAACTTCAAA
* *
19015734 TAATTTATTTCAATGCATAACAAATATATATATATACATTCGGCCATAGTTTAATTCATTTCTCT
1 TAATTCATTTCAATGTATAAC-AATATATATATATACATTCGGCCATAGTTTAATTCATTTCTCT
19015799 GCATAACAATTACATATACATTCAGCTATAGAT
65 GCATAACAATTACATATACATTCAGCTATAGAT
* *
19015832 TAATTCATTTCAATGTATAAC-AGATATATATATACATTCGGCCATAGTTTAATTTATTTCTCTG
1 TAATTCATTTCAATGTATAACAATATATATATATACATTCGGCCATAGTTTAATTCATTTCTCTG
19015896 CATAACAATTACATATACATTCAGCTATAGAT
66 CATAACAATTACATATACATTCAGCTATAGAT
19015928 TAATTCATTTCAATGTATAACAAATATATATATATACATTCGGCCATA
1 TAATTCATTTCAATGTATAAC-AATATATATATATACATTCGGCCATA
19015976 ACCTATGTAA
Statistics
Matches: 137, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
96 94 0.69
98 43 0.31
ACGTcount: A:0.38, C:0.16, G:0.07, T:0.39
Consensus pattern (97 bp):
TAATTCATTTCAATGTATAACAATATATATATATACATTCGGCCATAGTTTAATTCATTTCTCTG
CATAACAATTACATATACATTCAGCTATAGAT
Found at i:19015948 original size:47 final size:47
Alignment explanation
Indices: 19015734--19015959 Score: 236
Period size: 47 Copynumber: 4.7 Consensus size: 47
19015724 TAACTTCAAA
* * * *
19015734 TAATTTATTTCAATGCATAACAAATATATATATATACATTCGGCCATAGTT
1 TAATTCATTTCAATGCATAAC--A-AT-TACATATACATTCAGCCATAGAT
** *
19015785 TAATTCATTTCTCTGCATAACAATTACATATACATTCAGCTATAGAT
1 TAATTCATTTCAATGCATAACAATTACATATACATTCAGCCATAGAT
* * * *
19015832 TAATTCATTTCAATGTATAACAGATATATATATACATTCGGCCATAGTT
1 TAATTCATTTCAATGCATAACA-AT-TACATATACATTCAGCCATAGAT
* ** *
19015881 TAATTTATTTCTCTGCATAACAATTACATATACATTCAGCTATAGAT
1 TAATTCATTTCAATGCATAACAATTACATATACATTCAGCCATAGAT
* * *
19015928 TAATTCATTTCAATGTATAACAAATATATATA
1 TAATTCATTTCAATGCATAACAATTACATATA
19015960 TATACATTCG
Statistics
Matches: 145, Mismatches: 28, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
47 83 0.57
48 6 0.04
49 38 0.26
51 18 0.12
ACGTcount: A:0.38, C:0.15, G:0.07, T:0.39
Consensus pattern (47 bp):
TAATTCATTTCAATGCATAACAATTACATATACATTCAGCCATAGAT
Found at i:19018924 original size:41 final size:41
Alignment explanation
Indices: 19018868--19018998 Score: 140
Period size: 41 Copynumber: 3.2 Consensus size: 41
19018858 TGATTCGGTA
* * *
19018868 CACCGGCTTTTAGCCTGCTAGACTTATAGTCCG-A-AATGTAT
1 CACCGGCATTAAGCCTGCTAGACGTATAGTCCGAATAAT-T-T
*
19018909 CACCGGCATTAAGCCTGCTAGACGTATAGTCTGAATAATTT
1 CACCGGCATTAAGCCTGCTAGACGTATAGTCCGAATAATTT
* * * * *
19018950 CACCGGCATAAAGCCTGCTAGACATAAAGTCTGAATTATTT
1 CACCGGCATTAAGCCTGCTAGACGTATAGTCCGAATAATTT
*
19018991 CACTGGCA
1 CACCGGCA
19018999 ATAAATCAGA
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
41 74 0.94
42 2 0.03
43 3 0.04
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (41 bp):
CACCGGCATTAAGCCTGCTAGACGTATAGTCCGAATAATTT
Found at i:19020662 original size:25 final size:25
Alignment explanation
Indices: 19020617--19020665 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
19020607 TATTTGTTTA
*
19020617 ATTATAATATTATAATATAATATAT
1 ATTATAACATTATAATATAATATAT
19020642 ATTATAACATTTATAAT-TAATATA
1 ATTATAACA-TTATAATATAATATA
19020666 AAAACTATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (25 bp):
ATTATAACATTATAATATAATATAT
Found at i:19025803 original size:41 final size:41
Alignment explanation
Indices: 19025747--19025851 Score: 133
Period size: 41 Copynumber: 2.6 Consensus size: 41
19025737 TGATTCGGTA
* * *
19025747 CACCGGCTTTTAGCCTGCTAGACTTATAGTCCG-A-AATGTAT
1 CACCGGCATTAAGCCTGCTAGACGTATAGTCCGAATAAT-T-T
*
19025788 CACCGGCATTAAGCCTGCTAGACGTATAGTCTGAATAATTT
1 CACCGGCATTAAGCCTGCTAGACGTATAGTCCGAATAATTT
*
19025829 CACCGGCATAAAGCCTGCTAGAC
1 CACCGGCATTAAGCCTGCTAGAC
19025852 ATAAAGTCTA
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
41 52 0.91
42 2 0.04
43 3 0.05
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (41 bp):
CACCGGCATTAAGCCTGCTAGACGTATAGTCCGAATAATTT
Found at i:19025860 original size:41 final size:41
Alignment explanation
Indices: 19025787--19025882 Score: 129
Period size: 41 Copynumber: 2.3 Consensus size: 41
19025777 CCGAAATGTA
* * * *
19025787 TCACCGGCATTAAGCCTGCTAGACGTATAGTCTGAATAATT
1 TCACCGGCATAAAGCCTGCTAGACATAAAGTCTAAATAATT
*
19025828 TCACCGGCATAAAGCCTGCTAGACATAAAGTCTAAATTATT
1 TCACCGGCATAAAGCCTGCTAGACATAAAGTCTAAATAATT
*
19025869 TCACTGGCAATAAA
1 TCACCGGC-ATAAA
19025883 TCAGATTAGT
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
41 43 0.90
42 5 0.10
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (41 bp):
TCACCGGCATAAAGCCTGCTAGACATAAAGTCTAAATAATT
Found at i:19027072 original size:25 final size:25
Alignment explanation
Indices: 19027027--19027075 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
19027017 TATTTGTTTA
*
19027027 ATTATAATATTATAATATAATATAT
1 ATTATAACATTATAATATAATATAT
19027052 ATTATAACATTTATAAT-TAATATA
1 ATTATAACA-TTATAATATAATATA
19027076 AAAACTATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (25 bp):
ATTATAACATTATAATATAATATAT
Found at i:19033483 original size:14 final size:15
Alignment explanation
Indices: 19033461--19033489 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
19033451 TAAATAATTA
19033461 AAAATTCATAAAAAT
1 AAAATTCATAAAAAT
19033476 AAAA-TCATAAAAAT
1 AAAATTCATAAAAAT
19033490 TTTATTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (15 bp):
AAAATTCATAAAAAT
Found at i:19036925 original size:12 final size:12
Alignment explanation
Indices: 19036908--19036939 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
19036898 ATTTTTACCC
19036908 AATTTCTTCAAT
1 AATTTCTTCAAT
19036920 AATTTCTTCAAT
1 AATTTCTTCAAT
19036932 AATTTCTT
1 AATTTCTT
19036940 TTTCTAACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.31, C:0.16, G:0.00, T:0.53
Consensus pattern (12 bp):
AATTTCTTCAAT
Found at i:19042680 original size:12 final size:12
Alignment explanation
Indices: 19042663--19042688 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
19042653 AAAAAACACT
19042663 TCAAATAATTGC
1 TCAAATAATTGC
19042675 TCAAATAATTGC
1 TCAAATAATTGC
19042687 TC
1 TC
19042689 GAGTTGATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (12 bp):
TCAAATAATTGC
Found at i:19044236 original size:15 final size:15
Alignment explanation
Indices: 19044216--19044251 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
19044206 AGAAAAAGTA
* *
19044216 AATTTTAAAATATTT
1 AATTTTAAAACATTG
19044231 AATTTTAAAACATTG
1 AATTTTAAAACATTG
19044246 AATTTT
1 AATTTT
19044252 TTGTTGACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (15 bp):
AATTTTAAAACATTG
Found at i:19049466 original size:32 final size:31
Alignment explanation
Indices: 19049385--19049480 Score: 165
Period size: 31 Copynumber: 3.1 Consensus size: 31
19049375 CTTAGATAAT
*
19049385 TTTAAAAAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
*
19049416 TTGAAAGAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
19049447 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
19049479 TT
1 TT
19049481 GTAATTTGCC
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
31 37 0.61
32 24 0.39
ACGTcount: A:0.32, C:0.09, G:0.12, T:0.46
Consensus pattern (31 bp):
TTTAAAGAGTTTTATTAGGATTCAATTACTC
Found at i:19051395 original size:18 final size:18
Alignment explanation
Indices: 19051374--19051411 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
19051364 AGCCCAAATC
19051374 AAAAT-ATAATTTAGTTAA
1 AAAATAATAATTTA-TTAA
*
19051392 AAAATAATATTTTATTAA
1 AAAATAATAATTTATTAA
19051410 AA
1 AA
19051412 TATTAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (18 bp):
AAAATAATAATTTATTAA
Found at i:19051538 original size:24 final size:24
Alignment explanation
Indices: 19051511--19051571 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 24
19051501 TATATCTTTT
19051511 GTTATAATATATAATATAAT-AATA
1 GTTATAATATATAATAT-ATGAATA
19051535 GTTATACATATAT-ATATATGAATA
1 GTTATA-ATATATAATATATGAATA
* *
19051559 CTTATAAAATATA
1 GTTATAATATATA
19051572 TTATTTCATT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
23 7 0.22
24 19 0.59
25 6 0.19
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (24 bp):
GTTATAATATATAATATATGAATA
Found at i:19051594 original size:10 final size:10
Alignment explanation
Indices: 19051518--19051642 Score: 50
Period size: 10 Copynumber: 12.3 Consensus size: 10
19051508 TTTGTTATAA
19051518 TATATAATA-
1 TATATAATAT
19051527 TA-ATAATAGT
1 TATATAATA-T
*
19051537 TATACATATAT
1 TATATA-ATAT
19051548 ATATATGAATACT
1 -TATAT-AATA-T
*
19051561 TATAAAATA-
1 TATATAATAT
*
19051570 TAT-TATTTCAT
1 TATATA-AT-AT
19051581 TATATAATAT
1 TATATAATAT
* *
19051591 TATATCACA-
1 TATATAATAT
*
19051600 TACTATAATAG
1 TA-TATAATAT
19051611 TATATAATA-
1 TATATAATAT
19051620 TAT-TAATTAT
1 TATATAA-TAT
19051630 TATCAT-ATAT
1 TAT-ATAATAT
19051640 TAT
1 TAT
19051643 TATTTATTAT
Statistics
Matches: 89, Mismatches: 10, Indels: 33
0.67 0.08 0.25
Matches are distributed among these distances:
8 10 0.11
9 13 0.15
10 33 0.37
11 14 0.16
12 17 0.19
13 2 0.02
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (10 bp):
TATATAATAT
Found at i:19051973 original size:15 final size:15
Alignment explanation
Indices: 19051953--19052015 Score: 58
Period size: 15 Copynumber: 4.2 Consensus size: 15
19051943 CTAACCCTCC
19051953 TATTATATTATATAA
1 TATTATATTATATAA
* *
19051968 TATTATATTATGTCA
1 TATTATATTATATAA
*
19051983 TATAATA-TATA-ATA
1 TATTATATTATATA-A
*
19051997 TATTAATAGTATATAA
1 TATT-ATATTATATAA
19052013 TAT
1 TAT
19052016 ATTGATAGTA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
14 7 0.18
15 22 0.58
16 8 0.21
17 1 0.03
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (15 bp):
TATTATATTATATAA
Found at i:19051978 original size:20 final size:19
Alignment explanation
Indices: 19051956--19052036 Score: 83
Period size: 18 Copynumber: 4.1 Consensus size: 19
19051946 ACCCTCCTAT
*
19051956 TATATTATATAATATTATAT
1 TATATTATATAATA-TATAA
* *
19051976 TATGTCATATAATATATAA
1 TATATTATATAATATATAA
*
19051995 TATATTA-ATAGTATATAA
1 TATATTATATAATATATAA
19052013 TATATTGATAGTATATATATAA
1 TATATT-ATA-TA-ATATATAA
19052035 TA
1 TA
19052037 GTTGTACATT
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
18 16 0.32
19 10 0.20
20 13 0.26
21 2 0.04
22 9 0.18
ACGTcount: A:0.47, C:0.01, G:0.05, T:0.47
Consensus pattern (19 bp):
TATATTATATAATATATAA
Found at i:19052017 original size:27 final size:24
Alignment explanation
Indices: 19051956--19052017 Score: 58
Period size: 25 Copynumber: 2.5 Consensus size: 24
19051946 ACCCTCCTAT
*
19051956 TATAT-TATATAATATTATATTATG
1 TATATATATAT-ATAATATATTATG
19051980 TCATATA-ATATATAATATATTAATAG
1 T-ATATATATATATAATATATT-AT-G
19052006 TATATA-ATATAT
1 TATATATATATAT
19052018 TGATAGTATA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
24 10 0.30
25 21 0.64
26 2 0.06
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (24 bp):
TATATATATATATAATATATTATG
Found at i:19053455 original size:16 final size:16
Alignment explanation
Indices: 19053434--19053468 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
19053424 CCAATATCCA
* *
19053434 ATTATCATATTTGCAC
1 ATTATCACATTTACAC
19053450 ATTATCACATTTACAC
1 ATTATCACATTTACAC
19053466 ATT
1 ATT
19053469 TATATTCATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.34, C:0.20, G:0.03, T:0.43
Consensus pattern (16 bp):
ATTATCACATTTACAC
Found at i:19055848 original size:42 final size:42
Alignment explanation
Indices: 19055796--19056125 Score: 457
Period size: 42 Copynumber: 7.8 Consensus size: 42
19055786 CAAACAAAAA
* **
19055796 CGCCGCTAAAGACCATGTTCTTTAGCGGCGTTTTTGTT-TGTG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTT-TTCTAAG
* **
19055838 CGCCTCTAAAGAACATGTTCTTTAGCGGCGTTTTTGTT-TGTG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTT-TTCTAAG
* *
19055880 CGCCTCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAA
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
* * *
19055922 CACCTCTAAAGAACATGTTCTTTAGCTGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
* * *
19055964 CGCCTCTAAAGAGCATGTTCTTTAGCGGCGTTTTTTTCTATG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
*
19056006 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
* *
19056048 CGCCGCTAAAGAACATGGTCTTTAGCGGCATCTTTTTTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGT-TTTTTTCTAAG
*
19056091 CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTT
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTT
19056126 ATACAAAAAT
Statistics
Matches: 266, Mismatches: 20, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
41 2 0.01
42 225 0.85
43 39 0.15
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
Found at i:19056513 original size:21 final size:21
Alignment explanation
Indices: 19056456--19056500 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
19056446 TACTTCTCTT
* *
19056456 GCTGCAGCCTCCGCTTCCCTC
1 GCTGCAGCCGCTGCTTCCCTC
19056477 GCTGCAGCCGCTGCTTCCCTC
1 GCTGCAGCCGCTGCTTCCCTC
19056498 GCT
1 GCT
19056501 TCCGCCTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.04, C:0.49, G:0.22, T:0.24
Consensus pattern (21 bp):
GCTGCAGCCGCTGCTTCCCTC
Found at i:19058046 original size:16 final size:16
Alignment explanation
Indices: 19057999--19058040 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 16
19057989 TGTATGCCCC
*
19057999 ATGTAAGTAATGTAAGCT
1 ATGTAAGTAATGT-A-TT
19058017 ATGTAAGTAATGTATT
1 ATGTAAGTAATGTATT
19058033 ATGTAAGT
1 ATGTAAGT
19058041 TGTGTACTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.39
17 1 0.04
18 13 0.57
ACGTcount: A:0.38, C:0.02, G:0.21, T:0.38
Consensus pattern (16 bp):
ATGTAAGTAATGTATT
Found at i:19058069 original size:9 final size:9
Alignment explanation
Indices: 19058055--19058445 Score: 373
Period size: 9 Copynumber: 43.4 Consensus size: 9
19058045 TACTACATCA
*
19058055 TTATGTGAG
1 TTATGTAAG
19058064 TTATGTAAG
1 TTATGTAAG
* *
19058073 TTATTTAAT
1 TTATGTAAG
*
19058082 TTACT-TAAT
1 TTA-TGTAAG
19058091 TTATGTAAG
1 TTATGTAAG
19058100 TTATGTAAG
1 TTATGTAAG
* * *
19058109 ATATTTAAT
1 TTATGTAAG
19058118 TTATGTAAG
1 TTATGTAAG
19058127 TTATGTAAG
1 TTATGTAAG
* *
19058136 TTATTTAAT
1 TTATGTAAG
19058145 TTACT-T-AG
1 TTA-TGTAAG
19058153 TTTATGTAAG
1 -TTATGTAAG
19058163 TTATGTAAG
1 TTATGTAAG
* * *
19058172 ATATTTAAT
1 TTATGTAAG
19058181 TTATGTAAG
1 TTATGTAAG
19058190 TTATGTAAG
1 TTATGTAAG
* * *
19058199 ATATTTAAT
1 TTATGTAAG
19058208 TTATGTAAG
1 TTATGTAAG
19058217 TTATGTAAG
1 TTATGTAAG
*
19058226 TTATTTAA-
1 TTATGTAAG
19058234 TTAATGTAAG
1 TT-ATGTAAG
19058244 TTATGTAAG
1 TTATGTAAG
* *
19058253 TTATTTAAT
1 TTATGTAAG
*
19058262 TTACT-TAAT
1 TTA-TGTAAG
19058271 TTATGTAAG
1 TTATGTAAG
*
19058280 TTATGTAAC
1 TTATGTAAG
* *
19058289 TTATTTAAT
1 TTATGTAAG
*
19058298 TTACT-TAAT
1 TTA-TGTAAG
19058307 TTATGTAAG
1 TTATGTAAG
19058316 TTATGTAAG
1 TTATGTAAG
* *
19058325 TTATTTAAT
1 TTATGTAAG
19058334 TTATGTAAG
1 TTATGTAAG
19058343 TTATGTAAG
1 TTATGTAAG
* *
19058352 TTATTTAAT
1 TTATGTAAG
*
19058361 TTTTGTAAG
1 TTATGTAAG
19058370 TTATGTAAG
1 TTATGTAAG
* *
19058379 TTATTTAAT
1 TTATGTAAG
19058388 TTATGTAAG
1 TTATGTAAG
19058397 TTATGTAAG
1 TTATGTAAG
* *
19058406 TTATTTAAT
1 TTATGTAAG
*
19058415 TTTTGTAAG
1 TTATGTAAG
19058424 TTATGTAA-
1 TTATGTAAG
19058432 TTAATGTAAG
1 TT-ATGTAAG
19058442 TTAT
1 TTAT
19058446 TTAATTTGTG
Statistics
Matches: 314, Mismatches: 54, Indels: 28
0.79 0.14 0.07
Matches are distributed among these distances:
8 9 0.03
9 295 0.94
10 10 0.03
ACGTcount: A:0.34, C:0.01, G:0.14, T:0.51
Consensus pattern (9 bp):
TTATGTAAG
Found at i:19058131 original size:63 final size:63
Alignment explanation
Indices: 19058055--19058452 Score: 534
Period size: 63 Copynumber: 6.5 Consensus size: 63
19058045 TACTACATCA
* *
19058055 TTATGTGAGTTATGTAAGTTATTTAATTTACTTAATTTATGTAAGTTATGTAAGATATTTAAT
1 TTATGTAAGTTATGTAAGTTATTTAATTTACTTAATTTATGTAAGTTATGTAAGTTATTTAAT
* *
19058118 TTATGTAAGTTATGTAAGTTATTTAATTTACTTAGTTTATGTAAGTTATGTAAGATATTTAAT
1 TTATGTAAGTTATGTAAGTTATTTAATTTACTTAATTTATGTAAGTTATGTAAGTTATTTAAT
19058181 TTATGTAAGTTATGTAAG--A--T-A--T--TTAATTTATGTAAGTTATGTAAGTTATTTAAT
1 TTATGTAAGTTATGTAAGTTATTTAATTTACTTAATTTATGTAAGTTATGTAAGTTATTTAAT
* *
19058235 TAATGTAAGTTATGTAAGTTATTTAATTTACTTAATTTATGTAAGTTATGTAACTTATTTAAT
1 TTATGTAAGTTATGTAAGTTATTTAATTTACTTAATTTATGTAAGTTATGTAAGTTATTTAAT
* * * *
19058298 TTACT-TAATTTATGTAAGTTATGTAAGTTATTTAATTTATGTAAGTTATGTAAGTTATTTAAT
1 TTA-TGTAAGTTATGTAAGTTATTTAATTTACTTAATTTATGTAAGTTATGTAAGTTATTTAAT
* * * * *
19058361 TTTTGTAAGTTATGTAAGTTATTTAATTTA-TGTAAGTTATGTAAGTTATTTAA-TTTTTGTAAG
1 TTATGTAAGTTATGTAAGTTATTTAATTTACT-TAATTTATGTAAGTTATGTAAGTTATT-TAAT
19058424 TTATGTAA-TTAATGTAAGTTATTTAATTT
1 TTATGTAAGTT-ATGTAAGTTATTTAATTT
19058453 GTGATACCTA
Statistics
Matches: 300, Mismatches: 21, Indels: 28
0.86 0.06 0.08
Matches are distributed among these distances:
54 47 0.16
56 2 0.01
58 2 0.01
59 2 0.01
61 2 0.01
62 8 0.03
63 236 0.79
64 1 0.00
ACGTcount: A:0.33, C:0.01, G:0.14, T:0.52
Consensus pattern (63 bp):
TTATGTAAGTTATGTAAGTTATTTAATTTACTTAATTTATGTAAGTTATGTAAGTTATTTAAT
Found at i:19061686 original size:260 final size:260
Alignment explanation
Indices: 19061225--19061752 Score: 869
Period size: 260 Copynumber: 2.0 Consensus size: 260
19061215 GAGTAAAAAT
* *
19061225 GCCACTAATAACACGGACAAAACGACATCGTCATAAGATAACATTAAACATTTTGCGGCGCTTTA
1 GCCACTAATAACAAGGACAAAACGACACCGTCATAAGATAACATTAAACATTTTGCGGCGCTTTA
* * * *
19061290 TCTAAAGCGCCACTAATAAAAATAGGAAACGGCGCCATTTCCTCAGCTCGTAGTAAATATTTGTG
66 GCTAAAGCGCCACTAATAAAAATAGGAAACGACACCATTTCCTCAGCTCGTAATAAATATTTGTG
*
19061355 GCGTTTTTAAAATGCGCCACTAAAAGAAAAAAACAAAACAGCACCGTCTTCGTTACAGTTAAAGG
131 GCGTTTTTAAAATACGCCACTAAAAGAAAAAAACAAAACAGCACCGTCTTCGTTACAGTTAAAGG
* *
19061420 AAATTTGTGGCGTTTCTTCGTAAAACGCCGGTAATATATCACCTTTAGCGGCGTTTTTCATATGC
196 AAATTTGTGGCGTTTCTTCGTAAAACGCCGGTAAGATATCACCTTTAGCGGCGTTTTTCAAATGC
* * * *
19061485 GCCACTAATAACAAGGACAAAACGGCACCGTTATAAGGTAGCATTAAACATTTTTGCGGCGCTTT
1 GCCACTAATAACAAGGACAAAACGACACCGTCATAAGATAACATTAAACA-TTTTGCGGCGCTTT
*
19061550 AGCTAAAGCGCCACTAATAAAAATAGGAAACGACACCGTTTCCTCAGCTCGTAATAAATATTTGT
65 AGCTAAAGCGCCACTAATAAAAATAGGAAACGACACCATTTCCTCAGCTCGTAATAAATATTTGT
* * *
19061615 GGCGTTTTT-AAATACGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTTGTTACAGTTAAAG
130 GGCGTTTTTAAAATACGCCACTAAAAGAAAAAAACAAAACAGCACCGTCTTCGTTACAGTTAAAG
* *
19061679 GAAATTTGTGGCGTTTCTTCGTAAAACGCTGGTAAGATATCACTTTTAGCGGCGTTTTTCAAATG
195 GAAATTTGTGGCGTTTCTTCGTAAAACGCCGGTAAGATATCACCTTTAGCGGCGTTTTTCAAATG
19061744 C
260 C
19061745 GCCACTAA
1 GCCACTAA
19061753 AGGAAAACAA
Statistics
Matches: 248, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
260 165 0.67
261 83 0.33
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (260 bp):
GCCACTAATAACAAGGACAAAACGACACCGTCATAAGATAACATTAAACATTTTGCGGCGCTTTA
GCTAAAGCGCCACTAATAAAAATAGGAAACGACACCATTTCCTCAGCTCGTAATAAATATTTGTG
GCGTTTTTAAAATACGCCACTAAAAGAAAAAAACAAAACAGCACCGTCTTCGTTACAGTTAAAGG
AAATTTGTGGCGTTTCTTCGTAAAACGCCGGTAAGATATCACCTTTAGCGGCGTTTTTCAAATGC
Found at i:19061834 original size:115 final size:114
Alignment explanation
Indices: 19061615--19061852 Score: 388
Period size: 115 Copynumber: 2.1 Consensus size: 114
19061605 AAATATTTGT
19061615 GGCGTTTTTAAATACGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTTGTTACAGTTAAAGG
1 GGCGTTTTTAAATACGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTTGTTACAGTTAAAGG
* * * *
19061680 AAATTTGTGGCGTTTCTTCGTAAAACGCTGGTAAGATATCACTTTTAGC
66 AAATTTGCGACGTTTCTTCGTAAAACGCCGGTAAGATATCACCTTTAGC
* *
19061729 GGCGTTTTTCAAATGCGCCACTAAAGGAAAACAACAAAACGGCACCGTCTTTGTTACAGTTAAAG
1 GGCGTTTTT-AAATACGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTTGTTACAGTTAAAG
*
19061794 GAAATTTGCGACGTTTCTTCAG-AAAACGCCGGTAATATATCACCTTTAGC
65 GAAATTTGCGACGTTTCTTC-GTAAAACGCCGGTAAGATATCACCTTTAGC
19061844 GGCGTTTTT
1 GGCGTTTTT
19061853 TTATGAAGCG
Statistics
Matches: 115, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
114 9 0.08
115 105 0.91
116 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29
Consensus pattern (114 bp):
GGCGTTTTTAAATACGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTTGTTACAGTTAAAGG
AAATTTGCGACGTTTCTTCGTAAAACGCCGGTAAGATATCACCTTTAGC
Found at i:19062342 original size:7 final size:6
Alignment explanation
Indices: 19062303--19062384 Score: 56
Period size: 7 Copynumber: 12.0 Consensus size: 6
19062293 CAATATACCA
* *
19062303 TAAACC TTAAATCA TAAATCC TAAACCC CAAACC TAAAACTC TAAACTC
1 TAAACC -TAAA-CC TAAA-CC TAAA-CC TAAACC T-AAAC-C TAAAC-C
19062352 TAAACC ATAAACCC TAAACC GTAAACC TAAACC
1 TAAACC -TAAA-CC TAAACC -TAAACC TAAACC
19062385 ATATTTTTTG
Statistics
Matches: 64, Mismatches: 5, Indels: 13
0.78 0.06 0.16
Matches are distributed among these distances:
6 11 0.17
7 48 0.75
8 5 0.08
ACGTcount: A:0.48, C:0.32, G:0.01, T:0.20
Consensus pattern (6 bp):
TAAACC
Found at i:19062347 original size:21 final size:21
Alignment explanation
Indices: 19062322--19062382 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
19062312 AATCATAAAT
*
19062322 CCTAAACCCCAAACCTAAAAC
1 CCTAAACCCTAAACCTAAAAC
* *
19062343 TCTAAACTCTAAACC-ATAAAC
1 CCTAAACCCTAAACCTA-AAAC
*
19062364 CCTAAACCGTAAACCTAAA
1 CCTAAACCCTAAACCTAAA
19062383 CCATATTTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.48, C:0.34, G:0.02, T:0.16
Consensus pattern (21 bp):
CCTAAACCCTAAACCTAAAAC
Found at i:19062356 original size:14 final size:13
Alignment explanation
Indices: 19062299--19062387 Score: 81
Period size: 14 Copynumber: 6.5 Consensus size: 13
19062289 CCGTCAATAT
19062299 ACCATAAACCTTAA
1 ACCATAAACC-TAA
*
19062313 ATCATAAATCCTAA
1 ACCATAAA-CCTAA
**
19062327 ACCCCAAACCTAAA
1 ACCATAAACCT-AA
19062341 ACTC-TAAACTCTAA
1 AC-CATAAAC-CTAA
19062355 ACCATAAACCCTAA
1 ACCATAAA-CCTAA
*
19062369 ACCGTAAACCTAA
1 ACCATAAACCTAA
19062382 ACCATA
1 ACCATA
19062388 TTTTTTGGAA
Statistics
Matches: 62, Mismatches: 7, Indels: 13
0.76 0.09 0.16
Matches are distributed among these distances:
13 14 0.23
14 42 0.68
15 6 0.10
ACGTcount: A:0.48, C:0.31, G:0.01, T:0.19
Consensus pattern (13 bp):
ACCATAAACCTAA
Found at i:19062541 original size:20 final size:20
Alignment explanation
Indices: 19062514--19062563 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
19062504 TCTTCAATTT
*
19062514 CCAAACTCAACCCTAAAACC
1 CCAAACTCAAACCTAAAACC
* *
19062534 CTAAACTCAAACCTTAAACC
1 CCAAACTCAAACCTAAAACC
19062554 CCAAACTCAA
1 CCAAACTCAA
19062564 TCTCTAACAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.46, C:0.40, G:0.00, T:0.14
Consensus pattern (20 bp):
CCAAACTCAAACCTAAAACC
Found at i:19063270 original size:74 final size:76
Alignment explanation
Indices: 19063133--19063275 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
19063123 CGCTAAAGGA
* *
19063133 AAGCATTAGCGGCGCTTTCTTAGAAAACGCCGCTAAATCCACTGAAAGTTAAGAAAACGGTGCCG
1 AAGCATTAGCGGCGCTTTCTTAGAAAACGCCGCTAAAGCCACTGAAAGATAAGAAAACGGTGCCG
19063198 TTGGGCACCCC
66 TTGGGCACCCC
* * **
19063209 AAGCATTAGCGGCGC-TTCATTA-AAAACGCCGCTAAGGCCTC-GAAAGATCTGAAAACGGTGCC
1 AAGCATTAGCGGCGCTTTC-TTAGAAAACGCCGCTAAAGCCACTGAAAGATAAGAAAACGGTGCC
19063271 GTTGG
65 GTTGG
19063276 ACATATTTTT
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
74 23 0.38
75 19 0.32
76 18 0.30
ACGTcount: A:0.30, C:0.25, G:0.25, T:0.20
Consensus pattern (76 bp):
AAGCATTAGCGGCGCTTTCTTAGAAAACGCCGCTAAAGCCACTGAAAGATAAGAAAACGGTGCCG
TTGGGCACCCC
Found at i:19063465 original size:72 final size:72
Alignment explanation
Indices: 19063375--19063525 Score: 171
Period size: 72 Copynumber: 2.1 Consensus size: 72
19063365 AAAGCTGAGA
* * * * **
19063375 AAACGACATCGTTTGGCTTAGGGTTTTTAGCGACGCTTCCCCAAAAACG-CTGCTAAAT-CCCAA
1 AAACGGCACCGTTTGGCTTAGGATTATTAGCGACGCTTAACCAAAAACGTC-GCTAAATCCCCAA
19063438 AAACTACGG
65 AAACT-CGG
* * **
19063447 AAACGGCACCGTTTGGCTTAGGATTATTAGTGGCGCTTAATTAAAAACGTCGCTAAATCCCCAAA
1 AAACGGCACCGTTTGGCTTAGGATTATTAGCGACGCTTAACCAAAAACGTCGCTAAATCCCCAAA
*
19063512 AGCTCGG
66 AACTCGG
19063519 AAACGGC
1 AAACGGC
19063526 GTCGTTGGGC
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
72 56 0.85
73 10 0.15
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (72 bp):
AAACGGCACCGTTTGGCTTAGGATTATTAGCGACGCTTAACCAAAAACGTCGCTAAATCCCCAAA
AACTCGG
Found at i:19066384 original size:18 final size:18
Alignment explanation
Indices: 19066341--19066390 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
19066331 GGTTAATACA
19066341 GGTGATGATGATGGTGAT
1 GGTGATGATGATGGTGAT
*
19066359 GATGATGATGATGGT-AT
1 GGTGATGATGATGGTGAT
*
19066376 GGTGTATGAGGATGG
1 GGTG-ATGATGATGG
19066391 AGATATGGTC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 5 0.18
18 23 0.82
ACGTcount: A:0.24, C:0.00, G:0.44, T:0.32
Consensus pattern (18 bp):
GGTGATGATGATGGTGAT
Found at i:19077886 original size:92 final size:91
Alignment explanation
Indices: 19077729--19077937 Score: 278
Period size: 92 Copynumber: 2.3 Consensus size: 91
19077719 TTGATTTTAG
* * *
19077729 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATAACTATTAAATTAT
* *
19077794 ATTTAAT-ATTAATTATTTTAAATTGTA
65 ATGTAATAATT-ATTATTTTAAATTATA
*
19077821 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATT-TAATATTAATTATTAAATTA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTAT-ATA-TAACTATTAAATTA
19077885 TATGTAATAATTATTATTTTAAATTATA
64 TATGTAATAATTATTATTTTAAATTATA
* * * *
19077913 CAAATTCATAAAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
19077938 GTTATAATTA
Statistics
Matches: 104, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
90 1 0.01
91 29 0.28
92 71 0.68
93 3 0.03
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATAACTATTAAATTATA
TGTAATAATTATTATTTTAAATTATA
Found at i:19077900 original size:24 final size:25
Alignment explanation
Indices: 19077865--19077912 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
19077855 TTATGAAATT
19077865 TAATATTAATTA-TTAAATTATATG
1 TAATATTAATTATTTAAATTATATG
19077889 TAATAATT-ATTATTTTAAATTATA
1 TAAT-ATTAATTA-TTTAAATTATA
19077913 CAAATTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 8 0.38
25 3 0.14
26 10 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (25 bp):
TAATATTAATTATTTAAATTATATG
Found at i:19088461 original size:15 final size:15
Alignment explanation
Indices: 19088412--19088452 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
19088402 TTAAGAATTT
*
19088412 TATTAAATTAT-ATA
1 TATTTAATTATAATA
19088426 T-TTTAATTATAATA
1 TATTTAATTATAATA
19088440 TATTTAA-TATAAT
1 TATTTAATTATAAT
19088453 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 8 0.33
14 11 0.46
15 5 0.21
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:19088591 original size:18 final size:17
Alignment explanation
Indices: 19088563--19088597 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
19088553 AATTATAAGA
*
19088563 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
19088580 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
19088598 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:19088680 original size:156 final size:156
Alignment explanation
Indices: 19088396--19088710 Score: 542
Period size: 156 Copynumber: 2.0 Consensus size: 156
19088386 ATAAGAATAT
*
19088396 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATATAATTATGTTTA
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATAATTATGTTTA
** * * *
19088461 AATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAAT
66 AATATGATTAAAAAAATTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
*
19088526 AATAATTTACCAAAACAAATTTCTGC
131 AATAATTTACCAAAACAAATTTATGC
19088552 TAATTA-TAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAAT-ATAATTATGTTT
19088616 AAATATGATTAAAAAAATTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
65 AAATATGATTAAAAAAATTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
19088681 TAATCATTTACCAAAACAAATTTATGC
130 TAATAATTTACCAAAACAAATTTATGC
19088708 TAA
1 TAA
19088711 GGGTATTCTA
Statistics
Matches: 150, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
155 44 0.29
156 106 0.71
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.43
Consensus pattern (156 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATAATTATGTTTA
AATATGATTAAAAAAATTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
AATAATTTACCAAAACAAATTTATGC
Found at i:19088854 original size:16 final size:16
Alignment explanation
Indices: 19088833--19088868 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
19088823 GATTTGCTAT
19088833 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
19088849 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
19088865 TACA
1 TACA
19088869 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:19095833 original size:3 final size:3
Alignment explanation
Indices: 19095825--19095850 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
19095815 TAAAGATTAA
19095825 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
19095851 TTTTATTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:19096234 original size:19 final size:19
Alignment explanation
Indices: 19096210--19096257 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 19
19096200 ATTTAGGTTC
19096210 ACTAAATTTAAATTATATT
1 ACTAAATTTAAATTATATT
*
19096229 ACTAAATTT---CTATATT
1 ACTAAATTTAAATTATATT
*
19096245 AGTAAATTTAAAT
1 ACTAAATTTAAAT
19096258 ATTAGAATCT
Statistics
Matches: 23, Mismatches: 3, Indels: 6
0.72 0.09 0.19
Matches are distributed among these distances:
16 14 0.61
19 9 0.39
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (19 bp):
ACTAAATTTAAATTATATT
Found at i:19096259 original size:16 final size:16
Alignment explanation
Indices: 19096224--19096262 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
19096214 AATTTAAATT
* **
19096224 ATATTACTAAATTTCT
1 ATATTAGTAAATTTAA
19096240 ATATTAGTAAATTTAA
1 ATATTAGTAAATTTAA
19096256 ATATTAG
1 ATATTAG
19096263 AATCTCAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (16 bp):
ATATTAGTAAATTTAA
Found at i:19096933 original size:16 final size:16
Alignment explanation
Indices: 19096914--19096948 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
19096904 AAAGGGTTGA
*
19096914 AATGGAATAGAGCTGT
1 AATGGAATAGAGCTAT
19096930 AATGGAATAGAGCTAT
1 AATGGAATAGAGCTAT
19096946 AAT
1 AAT
19096949 TAGTAATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.06, G:0.26, T:0.26
Consensus pattern (16 bp):
AATGGAATAGAGCTAT
Found at i:19097168 original size:26 final size:27
Alignment explanation
Indices: 19097139--19097215 Score: 72
Period size: 26 Copynumber: 2.9 Consensus size: 27
19097129 AATAAATAAT
*
19097139 TTAATCATATTTTAATATAATTA-TTA
1 TTAATCATATTTTAATATAATAATTTA
*
19097165 TTAAAT-ATAATTTAATAATATATAATTTA
1 TT-AATCATATTTTAAT-ATA-ATAATTTA
*
19097194 ATAA-CAT-TTTTAATATAATAAT
1 TTAATCATATTTTAATATAATAAT
19097216 GTTTTTATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
25 5 0.12
26 14 0.33
27 12 0.29
28 7 0.17
29 4 0.10
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (27 bp):
TTAATCATATTTTAATATAATAATTTA
Found at i:19097187 original size:15 final size:15
Alignment explanation
Indices: 19097169--19097197 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
19097159 TTATTATTAA
19097169 ATATAATTTAATAAT
1 ATATAATTTAATAAT
19097184 ATATAATTTAATAA
1 ATATAATTTAATAA
19097198 CATTTTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATATAATTTAATAAT
Found at i:19098459 original size:64 final size:64
Alignment explanation
Indices: 19098378--19098508 Score: 244
Period size: 64 Copynumber: 2.0 Consensus size: 64
19098368 CCTGCTTCAC
*
19098378 TATGGCGAAGTGAATACATCCGGAATGGCTTAGCCATTTAGGTGAACCAAACATGGTGTCATAA
1 TATGGCGAAGTGAATACATCCGGAATGGCTTAGCCATTCAGGTGAACCAAACATGGTGTCATAA
*
19098442 TATGGCGAAGTGAATACATCCGGAATGGCTTAGCCATTCAGGTGAACCAAACATGGTGTTATAA
1 TATGGCGAAGTGAATACATCCGGAATGGCTTAGCCATTCAGGTGAACCAAACATGGTGTCATAA
19098506 TAT
1 TAT
19098509 TTTTTCTGTA
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (64 bp):
TATGGCGAAGTGAATACATCCGGAATGGCTTAGCCATTCAGGTGAACCAAACATGGTGTCATAA
Found at i:19104898 original size:3 final size:3
Alignment explanation
Indices: 19104890--19104935 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
19104880 GATATCGACG
19104890 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
19104936 ATTGATTAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:19105573 original size:18 final size:17
Alignment explanation
Indices: 19105550--19105592 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
19105540 ACAAAAAAAG
19105550 AAAGAAAAGCAATCGAAA
1 AAAGAAAAG-AATCGAAA
* *
19105568 AAAGAACAGAATGGAAA
1 AAAGAAAAGAATCGAAA
*
19105585 AGAGAAAA
1 AAAGAAAA
19105593 AAAGAAAACC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.67, C:0.07, G:0.21, T:0.05
Consensus pattern (17 bp):
AAAGAAAAGAATCGAAA
Found at i:19105679 original size:6 final size:6
Alignment explanation
Indices: 19105668--19105699 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
19105658 TTATAACCCG
19105668 AAAATA AAAATA AAAATA AAAATA AAAATA AA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AA
19105700 CAAATTTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Done.