Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 66 of 144
Found at i:19998522 original size:18 final size:19
Alignment explanation
Indices: 19998499--19998535 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
19998489 CAGGAAATTC
19998499 ACATAA-TTATATT-TGATA
1 ACATAACTTA-ATTATGATA
19998517 ACATAACTTAATTATGATA
1 ACATAACTTAATTATGATA
19998536 TAAATACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (19 bp):
ACATAACTTAATTATGATA
Found at i:19999699 original size:25 final size:25
Alignment explanation
Indices: 19999663--19999720 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
19999653 TGATAGGCAT
*
19999663 AAAGCCTAATTATATACACCAGAAC
1 AAAGCCTGATTATATACACCAGAAC
* * *
19999688 AAAGCCTGATTATATATACTAGCAC
1 AAAGCCTGATTATATACACCAGAAC
19999713 AAAGCCTG
1 AAAGCCTG
19999721 CTAGGCACAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.43, C:0.22, G:0.12, T:0.22
Consensus pattern (25 bp):
AAAGCCTGATTATATACACCAGAAC
Found at i:20001348 original size:17 final size:16
Alignment explanation
Indices: 20001326--20001360 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
20001316 ACATTGAGCA
20001326 TAATTTTAGTAAGTTTT
1 TAATTTTAGTAA-TTTT
*
20001343 TAATTTTATTAATTTT
1 TAATTTTAGTAATTTT
20001359 TA
1 TA
20001361 GAGTTAATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (16 bp):
TAATTTTAGTAATTTT
Found at i:20005622 original size:42 final size:41
Alignment explanation
Indices: 20005533--20005694 Score: 198
Period size: 42 Copynumber: 3.9 Consensus size: 41
20005523 CCTTCCGGGG
* * * *
20005533 CTTTAGCGGCATTTTTAAAAAAAGCACTGCTAATGCTTAGAT
1 CTTTAGCGGCATTTTT-GAAAAAGCGCCGCTAATGCTCAGAT
*
20005575 CTTTAGCGGCATTTTTGAAGAAGCGCCGCTAATGCTCAGAT
1 CTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTCAGAT
* *
20005616 CTTTTAGCGGCATTTTTGAAAAAGCGTCGCTATTGCTCAGAT
1 C-TTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTCAGAT
* * * * *
20005658 CTTTAGCGGCGTTTTAGGAAAAGAGCCACTAATGCTC
1 CTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTC
20005695 GAGGCTTTAA
Statistics
Matches: 104, Mismatches: 15, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
41 50 0.48
42 54 0.52
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (41 bp):
CTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTCAGAT
Found at i:20005690 original size:83 final size:84
Alignment explanation
Indices: 20005534--20005694 Score: 211
Period size: 83 Copynumber: 1.9 Consensus size: 84
20005524 CTTCCGGGGC
* * *
20005534 TTTAGCGGCATTTTTAAAAAAAGCACTGCTAATGCTTAGATCTTTAGCGGCATTTTTGAAGAAGC
1 TTTAGCGGCATTTTTAAAAAAAGCACTGCTAATGCTCAGATCTTTAGCGGCATTTTGGAAGAAGA
*
20005599 GCCGCTAATGCTCAGATCT
66 GCCACTAATGCTCAGATCT
* * * *
20005618 TTTAGCGGCATTTTT-GAAAAAGC-GTCGCTATTGCTCAGATCTTTAGCGGCGTTTTAGGAA-AA
1 TTTAGCGGCATTTTTAAAAAAAGCACT-GCTAATGCTCAGATCTTTAGCGGCATTTT-GGAAGAA
20005680 GAGCCACTAATGCTC
64 GAGCCACTAATGCTC
20005695 GAGGCTTTAA
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
82 1 0.01
83 48 0.72
84 18 0.27
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (84 bp):
TTTAGCGGCATTTTTAAAAAAAGCACTGCTAATGCTCAGATCTTTAGCGGCATTTTGGAAGAAGA
GCCACTAATGCTCAGATCT
Found at i:20006028 original size:21 final size:22
Alignment explanation
Indices: 20006002--20006043 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
20005992 TATCATAATA
*
20006002 GTTTAGGGTTTA-ATATATATG
1 GTTTAGGGTATATATATATATG
20006023 GTTTAGGGTATATATATATAT
1 GTTTAGGGTATATATATATAT
20006044 ATATGGTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (22 bp):
GTTTAGGGTATATATATATATG
Found at i:20006826 original size:17 final size:16
Alignment explanation
Indices: 20006793--20006826 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
20006783 ATATTAGATT
*
20006793 TAAAAAAATTAATAAA
1 TAAAAAAATTAACAAA
20006809 TAAAAAAATGTAACAAA
1 TAAAAAAAT-TAACAAA
20006826 T
1 T
20006827 TGTTACGGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (16 bp):
TAAAAAAATTAACAAA
Found at i:20007559 original size:19 final size:20
Alignment explanation
Indices: 20007506--20007560 Score: 64
Period size: 17 Copynumber: 3.0 Consensus size: 20
20007496 TCCATTATAT
*
20007506 ATGTTTTAGATCTTTATGTT
1 ATGTTTTAGATCTTTATGTG
*
20007526 ATGATTT-GA--TTTATG-G
1 ATGTTTTAGATCTTTATGTG
20007542 ATGTTTTAGATCTTTATGT
1 ATGTTTTAGATCTTTATGT
20007561 TAAATCTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
16 6 0.21
17 8 0.29
19 8 0.29
20 6 0.21
ACGTcount: A:0.22, C:0.04, G:0.18, T:0.56
Consensus pattern (20 bp):
ATGTTTTAGATCTTTATGTG
Found at i:20007569 original size:13 final size:13
Alignment explanation
Indices: 20007551--20007575 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20007541 GATGTTTTAG
20007551 ATCTTTATGTTAA
1 ATCTTTATGTTAA
20007564 ATCTTTATGTTA
1 ATCTTTATGTTA
20007576 TGATTTTAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.08, G:0.08, T:0.56
Consensus pattern (13 bp):
ATCTTTATGTTAA
Found at i:20008135 original size:2 final size:2
Alignment explanation
Indices: 20008128--20008168 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
20008118 AACAAGTATC
20008128 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
20008169 CGAATGCTGC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:20011924 original size:43 final size:43
Alignment explanation
Indices: 20011861--20012159 Score: 411
Period size: 43 Copynumber: 7.0 Consensus size: 43
20011851 GTTTATTCTT
** *
20011861 TAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTA
* *
20011904 TAGCAGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTA
* * **
20011947 TAGCGACGTTTGTGGGAAAAGTGTTGCTAAAGGTCGTGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTA
* * *
20011990 TAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGG-CTATAGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTC-GTGGTCTA
* * * *
20012033 TAGCGGCGTTAGTGGGAAAAGCGTCGCTAAAGGTCGTGGTTTG
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTA
* *
20012076 TAGCGGCGTTTGTGGAAAAAGCGCTGCTAAAGGTCGTGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTA
*
20012119 TAGCGGCGTTTGTGGGAAAAGTGCCGCTAAAGGTCGTGGTC
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTC
20012160 AGTATATTTG
Statistics
Matches: 224, Mismatches: 30, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
42 1 0.00
43 222 0.99
44 1 0.00
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTA
Found at i:20015826 original size:27 final size:27
Alignment explanation
Indices: 20015796--20016142 Score: 480
Period size: 27 Copynumber: 12.9 Consensus size: 27
20015786 TAAAATAACT
20015796 GAAATACCCTCGATGGGTAAAATTATC
1 GAAATACCCTCGATGGGTAAAATTATC
* * * *
20015823 GAAACACCTTCGATGGGTAAAATAACC
1 GAAATACCCTCGATGGGTAAAATTATC
*
20015850 GTAATACCCTCGATGGGTAAAATTATC
1 GAAATACCCTCGATGGGTAAAATTATC
*
20015877 GAAATACCCTCGATGGGTAAAATAATC
1 GAAATACCCTCGATGGGTAAAATTATC
* * * *
20015904 AAAATACCCTCAATGGGTAAAATGACC
1 GAAATACCCTCGATGGGTAAAATTATC
*
20015931 GAAATACCCTCGATGGGTAAAATTATT
1 GAAATACCCTCGATGGGTAAAATTATC
*
20015958 GAAATACCCTCGATGGGTAAAATTATT
1 GAAATACCCTCGATGGGTAAAATTATC
*
20015985 GAAATACCCTCGATGGGTAAAATTACC
1 GAAATACCCTCGATGGGTAAAATTATC
* * *
20016012 GAAATACCGTCGATGGGTAAAATAACC
1 GAAATACCCTCGATGGGTAAAATTATC
** *
20016039 GAAATACCCTTAATGGGTGAAATTATC
1 GAAATACCCTCGATGGGTAAAATTATC
*
20016066 GAAATACCCTCGATGGGTAAAATGATC
1 GAAATACCCTCGATGGGTAAAATTATC
* *
20016093 GAAATACCCTCGATGGGTAAAATGATT
1 GAAATACCCTCGATGGGTAAAATTATC
20016120 GAAATACCCTCG-TAGGGTAAAAT
1 GAAATACCCTCGAT-GGGTAAAAT
20016143 GATTGTAATA
Statistics
Matches: 284, Mismatches: 35, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 1 0.00
27 283 1.00
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.24
Consensus pattern (27 bp):
GAAATACCCTCGATGGGTAAAATTATC
Found at i:20015921 original size:81 final size:81
Alignment explanation
Indices: 20015796--20016182 Score: 510
Period size: 81 Copynumber: 4.8 Consensus size: 81
20015786 TAAAATAACT
* * * *
20015796 GAAATACCCTCGATGGGTAAAATTATCGAAACACCTTCGATGGGTAAAATAACCGTAATACCCTC
1 GAAATACCCTCGATGGGTAAAATTATCGAAATACCCTCGATGGGTAAAATGACCGAAATACCCTC
20015861 GATGGGTAAAATTATC
66 GATGGGTAAAATTATC
* * *
20015877 GAAATACCCTCGATGGGTAAAATAATCAAAATACCCTCAATGGGTAAAATGACCGAAATACCCTC
1 GAAATACCCTCGATGGGTAAAATTATCGAAATACCCTCGATGGGTAAAATGACCGAAATACCCTC
*
20015942 GATGGGTAAAATTATT
66 GATGGGTAAAATTATC
* * *
20015958 GAAATACCCTCGATGGGTAAAATTATTGAAATACCCTCGATGGGTAAAATTACCGAAATACCGTC
1 GAAATACCCTCGATGGGTAAAATTATCGAAATACCCTCGATGGGTAAAATGACCGAAATACCCTC
* *
20016023 GATGGGTAAAATAACC
66 GATGGGTAAAATTATC
** * *
20016039 GAAATACCCTTAATGGGTGAAATTATCGAAATACCCTCGATGGGTAAAATGATCGAAATACCCTC
1 GAAATACCCTCGATGGGTAAAATTATCGAAATACCCTCGATGGGTAAAATGACCGAAATACCCTC
* *
20016104 GATGGGTAAAATGATT
66 GATGGGTAAAATTATC
* * * * *
20016120 GAAATACCCTCG-TAGGGTAAAATGATTGTAATACCC-CTG-TAGGGTAAAATGACTGTAATACC
1 GAAATACCCTCGAT-GGGTAAAATTATCGAAATACCCTC-GAT-GGGTAAAATGACCGAAATACC
20016182 C
63 C
20016183 CTGTAGGGTA
Statistics
Matches: 267, Mismatches: 36, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
80 3 0.01
81 264 0.99
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (81 bp):
GAAATACCCTCGATGGGTAAAATTATCGAAATACCCTCGATGGGTAAAATGACCGAAATACCCTC
GATGGGTAAAATTATC
Found at i:20016176 original size:27 final size:27
Alignment explanation
Indices: 20016107--20016225 Score: 152
Period size: 27 Copynumber: 4.4 Consensus size: 27
20016097 TACCCTCGAT
* *
20016107 GGGTAAAATGATTGAAATA-CCCTCGTA
1 GGGTAAAATGACTGTAATACCCCT-GTA
*
20016134 GGGTAAAATGATTGTAATACCCCTGTA
1 GGGTAAAATGACTGTAATACCCCTGTA
20016161 GGGTAAAATGACTGTAATACCCCTGTA
1 GGGTAAAATGACTGTAATACCCCTGTA
** *
20016188 GGGTAAAATGACCATAATACCCC-ATA
1 GGGTAAAATGACTGTAATACCCCTGTA
*
20016214 GGGTTAAATGAC
1 GGGTAAAATGAC
20016226 CAAAAGGGTT
Statistics
Matches: 85, Mismatches: 6, Indels: 3
0.90 0.06 0.03
Matches are distributed among these distances:
26 13 0.15
27 68 0.80
28 4 0.05
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (27 bp):
GGGTAAAATGACTGTAATACCCCTGTA
Found at i:20016180 original size:54 final size:54
Alignment explanation
Indices: 20015786--20016225 Score: 215
Period size: 54 Copynumber: 8.2 Consensus size: 54
20015776 AATGGGCCTC
* * *
20015786 TAAAATAACTGAAATACCCTCG-ATGGGTAAAATTATCG-AA-ACACCT-TCGATGGG
1 TAAAATGACTGAAATACCCTCGTA-GGGTAAAATGATCGTAATACCCCTGT--A-GGG
* * * * *
20015840 TAAAATAACCGTAATACCCTCG-ATGGGTAAAATTATCGAAATA-CCCTCG-ATGGG
1 TAAAATGACTGAAATACCCTCGTA-GGGTAAAATGATCGTAATACCCCT-GTA-GGG
* * * * *
20015894 TAAAAT-AATCAAAATACCCTC-AATGGGTAAAATGACCGAAATA-CCCTCG-ATGGG
1 TAAAATGACT-GAAATACCCTCGTA-GGGTAAAATGATCGTAATACCCCT-GTA-GGG
* * * * *
20015948 TAAAATTATTGAAATACCCTCG-ATGGGTAAAATTATTGAAATA-CCCTCG-ATGGG
1 TAAAATGACTGAAATACCCTCGTA-GGGTAAAATGATCGTAATACCCCT-GTA-GGG
* * * * * *
20016002 TAAAATTACCGAAATACCGTCG-ATGGGTAAAATAACCGAAATA-CCCT-TAATGGG
1 TAAAATGACTGAAATACCCTCGTA-GGGTAAAATGATCGTAATACCCCTGT-A-GGG
* * *
20016056 TGAAATTA-TCGAAATACCCTCG-ATGGGTAAAATGATCGAAATA-CCCTCG-ATGGG
1 TAAAATGACT-GAAATACCCTCGTA-GGGTAAAATGATCGTAATACCCCT-GTA-GGG
* *
20016110 TAAAATGATTGAAATACCCTCGTAGGGTAAAATGATTGTAATACCCCTGTAGGG
1 TAAAATGACTGAAATACCCTCGTAGGGTAAAATGATCGTAATACCCCTGTAGGG
* * * *
20016164 TAAAATGACTGTAATACCC-CTGTAGGGTAAAATGACCATAATACCCC-ATAGGG
1 TAAAATGACTGAAATACCCTC-GTAGGGTAAAATGATCGTAATACCCCTGTAGGG
*
20016217 TTAAATGAC
1 TAAAATGAC
20016226 CAAAAGGGTT
Statistics
Matches: 332, Mismatches: 36, Indels: 37
0.82 0.09 0.09
Matches are distributed among these distances:
53 15 0.05
54 302 0.91
55 14 0.04
56 1 0.00
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (54 bp):
TAAAATGACTGAAATACCCTCGTAGGGTAAAATGATCGTAATACCCCTGTAGGG
Found at i:20016235 original size:17 final size:17
Alignment explanation
Indices: 20016213--20016247 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
20016203 AATACCCCAT
20016213 AGGGTTAAATGACCAAA
1 AGGGTTAAATGACCAAA
20016230 AGGGTTAAATGACCAAA
1 AGGGTTAAATGACCAAA
20016247 A
1 A
20016248 TACTCCTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.11, G:0.23, T:0.17
Consensus pattern (17 bp):
AGGGTTAAATGACCAAA
Found at i:20016250 original size:43 final size:44
Alignment explanation
Indices: 20016187--20016270 Score: 116
Period size: 43 Copynumber: 1.9 Consensus size: 44
20016177 ATACCCCTGT
* * *
20016187 AGGGTAAAATGACCATAATAC-CCCATAGGGTTAAATGACCAAA
1 AGGGTAAAATGACCAAAATACTCCCATAAGGTAAAATGACCAAA
* *
20016230 AGGGTTAAATGACCAAAATACTCCTATAAGGTAAAATGACC
1 AGGGTAAAATGACCAAAATACTCCCATAAGGTAAAATGACC
20016271 GTAATGCCTC
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
43 19 0.54
44 16 0.46
ACGTcount: A:0.44, C:0.18, G:0.18, T:0.20
Consensus pattern (44 bp):
AGGGTAAAATGACCAAAATACTCCCATAAGGTAAAATGACCAAA
Found at i:20016348 original size:24 final size:24
Alignment explanation
Indices: 20016316--20016373 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
20016306 TCGAGTGTAA
*
20016316 ATGATTGATTTGTCTGTGATTGGT
1 ATGACTGATTTGTCTGTGATTGGT
*
20016340 ATGACTGATTTGTCTGTGATTTGT
1 ATGACTGATTTGTCTGTGATTGGT
20016364 ATGACTGATT
1 ATGACTGATT
20016374 CTGAGCATGG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.19, C:0.07, G:0.26, T:0.48
Consensus pattern (24 bp):
ATGACTGATTTGTCTGTGATTGGT
Found at i:20016361 original size:11 final size:11
Alignment explanation
Indices: 20016321--20016363 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
20016311 TGTAAATGAT
20016321 TGATTTGTCTG
1 TGATTTGTCTG
* *
20016332 TGATTGGTATG
1 TGATTTGTCTG
20016343 ACTGATTTGTCTG
1 --TGATTTGTCTG
20016356 TGATTTGT
1 TGATTTGT
20016364 ATGACTGATT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 17 0.65
13 9 0.35
ACGTcount: A:0.14, C:0.07, G:0.28, T:0.51
Consensus pattern (11 bp):
TGATTTGTCTG
Found at i:20016498 original size:27 final size:27
Alignment explanation
Indices: 20016442--20016498 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
20016432 GGAAGTACTG
*
20016442 TACTGGTGGCTCTGCCACAATCACTGT
1 TACTGGTGGCTCTGCCACAATCACTAT
20016469 TACTGGTGGCT-TGGCCACATAT-ACTAT
1 TACTGGTGGCTCT-GCCACA-ATCACTAT
20016496 TAC
1 TAC
20016499 GTGCAGCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 1 0.04
27 24 0.89
28 2 0.07
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (27 bp):
TACTGGTGGCTCTGCCACAATCACTAT
Found at i:20016586 original size:32 final size:32
Alignment explanation
Indices: 20016545--20016683 Score: 154
Period size: 32 Copynumber: 4.4 Consensus size: 32
20016535 GTTGCGATGC
**
20016545 TACTGATGGCTTTGTGTTGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
*
20016577 TACTGATGGCTTTGTGCCGATCATATTACCAT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* * * * *
20016609 TACTGATGGCTGTGTGCTGATCATATCACTGC
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* * * *
20016641 TACTGATGGGTTTGTGTCAATCATATTACTG-
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
*
20016672 TACTTATGGCTT
1 TACTGATGGCTT
20016684 GTAGCCATTA
Statistics
Matches: 90, Mismatches: 17, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
31 10 0.11
32 80 0.89
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.40
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCATATTACCGT
Found at i:20016630 original size:64 final size:64
Alignment explanation
Indices: 20016545--20016669 Score: 178
Period size: 64 Copynumber: 2.0 Consensus size: 64
20016535 GTTGCGATGC
* * * * *
20016545 TACTGATGGCTTTGTGTTGATCATATTACCGTTACTGATGGCTTTGTGCCGATCATATTACCAT
1 TACTGATGGCTGTGTGCTGATCATATCACCGCTACTGATGGCTTTGTGCCAATCATATTACCAT
* * *
20016609 TACTGATGGCTGTGTGCTGATCATATCACTGCTACTGATGGGTTTGTGTCAATCATATTAC
1 TACTGATGGCTGTGTGCTGATCATATCACCGCTACTGATGGCTTTGTGCCAATCATATTAC
20016670 TGTACTTATG
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.39
Consensus pattern (64 bp):
TACTGATGGCTGTGTGCTGATCATATCACCGCTACTGATGGCTTTGTGCCAATCATATTACCAT
Found at i:20018592 original size:24 final size:24
Alignment explanation
Indices: 20018560--20018608 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
20018550 GAAGTTCAAC
20018560 AATTGAAAAAAATTCTCGATCTAA
1 AATTGAAAAAAATTCTCGATCTAA
20018584 AATTGAAAAAAATTCTCGATCTAA
1 AATTGAAAAAAATTCTCGATCTAA
20018608 A
1 A
20018609 CCAACTCTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.51, C:0.12, G:0.08, T:0.29
Consensus pattern (24 bp):
AATTGAAAAAAATTCTCGATCTAA
Found at i:20026671 original size:211 final size:211
Alignment explanation
Indices: 20026307--20026730 Score: 812
Period size: 211 Copynumber: 2.0 Consensus size: 211
20026297 CACTCACAGG
20026307 TTGAGAAGAAAATTGTTCAAGAGCTTGTTGATTATTGTTAGTCTAGATTCAACACCCTCACTATT
1 TTGAGAAGAAAATTGTTCAAGAGCTTGTTGATTATTGTTAGTCTAGATTCAACACCCTCACTATT
* *
20026372 TCTAGCCTTAAAGGGAAATGTATTTTTGTGAAACATGGCATCTAAGGATTCAATTATAACATTGT
66 TCTAGCCTTAAAGGGAAATGTATTTTCGTAAAACATGGCATCTAAGGATTCAATTATAACATTGT
*
20026437 TATCAAGGTTGAGCAACTTGTATGCGTTACTTATCAAGGCATAACCCATAAATGCATATCTAGAG
131 TATCAAGGTTGAGCAACTTGTATGCGTTACTCATCAAGGCATAACCCATAAATGCATATCTAGAG
*
20026502 GCTTTTACCCTAAGTT
196 GCTTTTACCCAAAGTT
20026518 TTGAGAAGAAAATTGTTCAAGAGCTTGTTGATTATTGTTAGTCTAGATTCAACACCCTCACTATT
1 TTGAGAAGAAAATTGTTCAAGAGCTTGTTGATTATTGTTAGTCTAGATTCAACACCCTCACTATT
20026583 TCTAGCCTTAAAGGGAAATGTATTTTCGTAAAACATGGCATCTAAGGATTCAATTATAACATTGT
66 TCTAGCCTTAAAGGGAAATGTATTTTCGTAAAACATGGCATCTAAGGATTCAATTATAACATTGT
20026648 TATCAAGGTTGAGCAACTTGTATGCGTTACTCATCAAGGCATAACCCATAAATGCATATCTAGAG
131 TATCAAGGTTGAGCAACTTGTATGCGTTACTCATCAAGGCATAACCCATAAATGCATATCTAGAG
20026713 GCTTTTACCCAAAGTT
196 GCTTTTACCCAAAGTT
20026729 TT
1 TT
20026731 AGACTTTTAT
Statistics
Matches: 209, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
211 209 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (211 bp):
TTGAGAAGAAAATTGTTCAAGAGCTTGTTGATTATTGTTAGTCTAGATTCAACACCCTCACTATT
TCTAGCCTTAAAGGGAAATGTATTTTCGTAAAACATGGCATCTAAGGATTCAATTATAACATTGT
TATCAAGGTTGAGCAACTTGTATGCGTTACTCATCAAGGCATAACCCATAAATGCATATCTAGAG
GCTTTTACCCAAAGTT
Found at i:20035238 original size:20 final size:20
Alignment explanation
Indices: 20035213--20035250 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
20035203 TACCTTGTTA
*
20035213 ACAAATTTGTTCATTTTTAC
1 ACAAATTTATTCATTTTTAC
*
20035233 ACAAATTTATTTATTTTT
1 ACAAATTTATTCATTTTT
20035251 TTGTACAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.11, G:0.03, T:0.55
Consensus pattern (20 bp):
ACAAATTTATTCATTTTTAC
Found at i:20053558 original size:25 final size:26
Alignment explanation
Indices: 20053508--20053570 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 26
20053498 TTTTTATATA
* *
20053508 ATATTATTTATTTTAAAATGTTTTAT
1 ATATTATTTATTTTAAAATCTCTTAT
**
20053534 AT-TTATTTATTTTAAGTTCTCTTAT
1 ATATTATTTATTTTAAAATCTCTTAT
*
20053559 ATATTGTTTATT
1 ATATTATTTATT
20053571 CGAAATTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
25 21 0.68
26 10 0.32
ACGTcount: A:0.29, C:0.03, G:0.05, T:0.63
Consensus pattern (26 bp):
ATATTATTTATTTTAAAATCTCTTAT
Found at i:20057532 original size:12 final size:12
Alignment explanation
Indices: 20057517--20057556 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
20057507 AAAACAAACA
20057517 AAAAGAAAAAAG
1 AAAAGAAAAAAG
*
20057529 AAAAGAAAAACG
1 AAAAGAAAAAAG
*
20057541 AAAAGAAAAGAG
1 AAAAGAAAAAAG
20057553 AAAA
1 AAAA
20057557 ATGAGAGGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.80, C:0.03, G:0.17, T:0.00
Consensus pattern (12 bp):
AAAAGAAAAAAG
Found at i:20057532 original size:24 final size:23
Alignment explanation
Indices: 20057505--20057557 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 23
20057495 ACTTGAGAAA
20057505 AAAAAACAAACAAAAAGAAAAAAG
1 AAAAAA-AAACAAAAAGAAAAAAG
* *
20057529 AAAAGAAAAACGAAAAGAAAAGAG
1 AAAA-AAAAACAAAAAGAAAAAAG
20057553 AAAAA
1 AAAAA
20057558 TGAGAGGCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 1 0.04
24 23 0.88
25 2 0.08
ACGTcount: A:0.81, C:0.06, G:0.13, T:0.00
Consensus pattern (23 bp):
AAAAAAAAACAAAAAGAAAAAAG
Found at i:20057537 original size:17 final size:18
Alignment explanation
Indices: 20057524--20057557 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
20057514 ACAAAAAGAA
*
20057524 AAAAGAAAAGA-AAAACG
1 AAAAGAAAAGAGAAAAAG
20057541 AAAAGAAAAGAGAAAAA
1 AAAAGAAAAGAGAAAAA
20057558 TGAGAGGCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.79, C:0.03, G:0.18, T:0.00
Consensus pattern (18 bp):
AAAAGAAAAGAGAAAAAG
Found at i:20058083 original size:108 final size:108
Alignment explanation
Indices: 20057894--20058089 Score: 286
Period size: 108 Copynumber: 1.8 Consensus size: 108
20057884 TTTGTATTCT
* *
20057894 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAATTTCCATCTT
1 AGCAAAATTTGATATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAAAAAATTTCCATCTT
20057959 ATCCATTGTGATAATCTTTTTCATCTTATACATCTCGTATCTC
66 ATCCATTGTGATAATCTTTTTCATCTTATACATCTCGTATCTC
* * ** * *
20058002 AGCAAAATTTGATGTCTTGATTGATTTGTTTGTTTAGAGCTTTGCTCTTAATAAAATTT-CATTT
1 AGCAAAATTTGATATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAA-AAAATTTCCATCT
* *
20058066 TGTCCATTTTGATAATCTTTTTCA
65 TATCCATTGTGATAATCTTTTTCA
20058090 AGCATTTTTC
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
108 71 0.92
109 6 0.08
ACGTcount: A:0.26, C:0.16, G:0.11, T:0.47
Consensus pattern (108 bp):
AGCAAAATTTGATATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAAAAAATTTCCATCTT
ATCCATTGTGATAATCTTTTTCATCTTATACATCTCGTATCTC
Found at i:20058680 original size:87 final size:87
Alignment explanation
Indices: 20058534--20058700 Score: 244
Period size: 87 Copynumber: 1.9 Consensus size: 87
20058524 AAACAGATCC
* ** *
20058534 TTGCCTCCATCAGTTGCAGTGGAGCCGGTTGAGGACAGCAGATCTTGCCTTCCTACATTAACAGC
1 TTGCCTCCATCAGTTGCAGTGGAGCCAGTCAAAGACAGCAGATCTTGCCTTCCTACATTAACAGC
*
20058599 GAAGCAGATTGAAAATAAAGTA
66 GAAGCAGATCGAAAATAAAGTA
* * * * *
20058621 TTGCCTCCATCGGTTGCAGTGGAGCTAGTCAAAGATAGCAGATCTTGCCTTTCTGCATTAACAGC
1 TTGCCTCCATCAGTTGCAGTGGAGCCAGTCAAAGACAGCAGATCTTGCCTTCCTACATTAACAGC
20058686 GAAGCAGATCGAAAA
66 GAAGCAGATCGAAAA
20058701 CAAAACCTTA
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
87 70 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (87 bp):
TTGCCTCCATCAGTTGCAGTGGAGCCAGTCAAAGACAGCAGATCTTGCCTTCCTACATTAACAGC
GAAGCAGATCGAAAATAAAGTA
Found at i:20058827 original size:88 final size:88
Alignment explanation
Indices: 20058555--20059580 Score: 1141
Period size: 88 Copynumber: 11.7 Consensus size: 88
20058545 AGTTGCAGTG
* * * * * * *
20058555 GAGCCGGTTGAGGACAGCAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATTGAA-A-ATAAA
1 GAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA
** * **
20058618 GTATTGCCTC-CATCGGTTGCAGTG
66 -CCTTGCCTCTC-TCGGTTGTAGCA
* ** * * * * *
20058642 GAGCTAGTCAAAGATAGCAGATCTTGCCTTTCTGCATTAACAGCGAAGCAGATCGAAAACA-AAA
1 GAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA
*
20058706 CCTTACCTCTCTCGGTTGTAGCA
66 CCTTGCCTCTCTCGGTTGTAGCA
* *
20058729 GAGCTGGTTGAAGACAACAGATCTTGCCTTCTTGCATTGACAGCGAAGTAGATCGAAGACACAAA
1 GAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA
20058794 CCTTGCCTCTCTCGGTTGTAGCA
66 CCTTGCCTCTCTCGGTTGTAGCA
* * * *
20058817 GAGCTGGTTGAAGACAATAGATCTTGTCTTCCTGCATTGATAGCGAAGCAGATCAAAGACACAAA
1 GAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA
**
20058882 CCTTGTATCTCTCGGTTGTAGCA
66 CCTTGCCTCTCTCGGTTGTAGCA
* * * ** * * *
20058905 GAGCTGTTTGAAGACAACAGATCTTGTCTTCCTACCCTGACAACGAAGCAAATCGAAGACACAAG
1 GAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA
**
20058970 CCTTGCCTCTCTCGGTTGTAGTG
66 CCTTGCCTCTCTCGGTTGTAGCA
* * * *
20058993 GAGCTGGTTGAATACAACAGATATTGCCTTCCTGCATTGATAGCGAAGCAGATCAAAGACACAAA
1 GAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA
**
20059058 CCTTGTATCTCTCGGTTGTAGCA
66 CCTTGCCTCTCTCGGTTGTAGCA
** * ** *
20059081 GAGCTATTTGAAGACAACAGATCTTGCCTTCCTACCCTGACAGCGAAGCAGATCGAAGACACAAG
1 GAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA
**
20059146 CCTTGCCTCTCTCGGTTGTAGTG
66 CCTTGCCTCTCTCGGTTGTAGCA
* * *
20059169 GAGCTGGTTGAATACAACAGATCTTGCCTTCTTGCATTGACAGCGAAGCAGATCAAAGACACAAA
1 GAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA
20059234 CCTTGCCTCTCTCGGTTGTAGCA
66 CCTTGCCTCTCTCGGTTGTAGCA
* * * *
20059257 AAGCTGGTTAAAGACAACAGATATTGCCTTCCTGCATTGACAGCGAAGCAGATCAAAGACACAAA
1 GAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA
20059322 CCTTGCCTCTCTCGGTTGTAGCA
66 CCTTGCCTCTCTCGGTTGTAGCA
* *
20059345 GAGTTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAG
1 GAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA
* * * *
20059410 TCTTGCCTCCCTCGTTTGTAG-T
66 CCTTGCCTCTCTCGGTTGTAGCA
** * * * * * * * * *
20059432 GAAGCTGGTCAAAGATAGCAAATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGAAACCA
1 G-AGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAA
** * *
20059497 GTCTTGCCT-TCAT--GTACTGACAGCG
65 ACCTTGCCTCTC-TCGGT--TG-TAGCA
* ** * * * *
20059522 GAGCAGACTGAAGATAGCAGATTTTGCCTTCCTGCATTGACAGCGAAGCAGATCTAAGA
1 GAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGA
20059581 TTACAGATCT
Statistics
Matches: 797, Mismatches: 132, Indels: 18
0.84 0.14 0.02
Matches are distributed among these distances:
86 1 0.00
87 116 0.15
88 630 0.79
89 49 0.06
90 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.25
Consensus pattern (88 bp):
GAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA
CCTTGCCTCTCTCGGTTGTAGCA
Found at i:20059239 original size:44 final size:44
Alignment explanation
Indices: 20059189--20059580 Score: 188
Period size: 44 Copynumber: 8.9 Consensus size: 44
20059179 AATACAACAG
20059189 ATCTTGCCTTCTTGCATTGACAGCGAAGCAGATCAAAGACACAA
1 ATCTTGCCTTCTTGCATTGACAGCGAAGCAGATCAAAGACACAA
* * * * * * * * *
20059233 ACCTTGCCTCTCTCG-GTTG-TAGCAAAGCTGGTTAAAGACAACAG
1 ATCTTGCCT-TCTTGCATTGACAGCGAAGCAGATCAAAGAC-ACAA
* *
20059277 ATATTGCCTTCCTGCATTGACAGCGAAGCAGATCAAAGACACAA
1 ATCTTGCCTTCTTGCATTGACAGCGAAGCAGATCAAAGACACAA
* * * * ** * ** *
20059321 ACCTTGCCTCTCTCG-GTTG-TAGC-AGAGTTGGTTGAAGACAACAG
1 ATCTTGCCT-TCTTGCATTGACAGCGA-AGCAGATCAAAGAC-ACAA
* *
20059365 ATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAA
1 ATCTTGCCTTCTTGCATTGACAGCGAAGCAGATCAAAGACACAA
* * * * * * * * *
20059409 GTCTTGCCTCCCT-CGTTTG-TAGTGAAGCTGGTCAAAGATAGCAA
1 ATCTTGCCTTCTTGC-ATTGACAGCGAAGCAGATCAAAGACA-CAA
* * * * * * * *
20059453 ATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGAAACCA
1 ATCTTGCCTTCTTGCATTGACAGCGAAGCAGATCAAAGACACAA
* * * * * * * *
20059497 GTCTTGCCTTCATGTACTGACAGCGGAGCAGA-CTGAAGATAGCAG
1 ATCTTGCCTTCTTGCATTGACAGCGAAGCAGATC-AAAGACA-CAA
* * *
20059542 ATTTTGCCTTCCTGCATTGACAGCGAAGCAGATCTAAGA
1 ATCTTGCCTTCTTGCATTGACAGCGAAGCAGATCAAAGA
20059581 TTACAGATCT
Statistics
Matches: 253, Mismatches: 78, Indels: 33
0.70 0.21 0.09
Matches are distributed among these distances:
42 1 0.00
43 50 0.20
44 119 0.47
45 81 0.32
46 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (44 bp):
ATCTTGCCTTCTTGCATTGACAGCGAAGCAGATCAAAGACACAA
Found at i:20059745 original size:132 final size:132
Alignment explanation
Indices: 20059577--20059883 Score: 515
Period size: 132 Copynumber: 2.3 Consensus size: 132
20059567 AAGCAGATCT
20059577 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGAGGATTTTACCTCC
1 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGAGGATTTTACCTCC
*
20059642 CTGAGATTACAGTAGAGTACACTAAAGCCGGTAGTTCTATCTCCCTGGGCAGCAGTGGAATAGAT
66 CTGAGATTACAGTAGAGTACACTAAAGCCAGTAGTTCTATCTCCCTGGGCAGCAGTGGAATAGAT
20059707 TG
131 TG
* **
20059709 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTTT
1 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGAGGATTTTACCTCC
* * * * *
20059774 CTGAGATTACAGTGGAGTACATTGAATCCAGTAGTTCTATCTCCTTGGGCAGCAGTGGAATAGAT
66 CTGAGATTACAGTAGAGTACACTAAAGCCAGTAGTTCTATCTCCCTGGGCAGCAGTGGAATAGAT
20059839 TG
131 TG
* *
20059841 AAGATTGCAGATCTTATCTCCCTAAGGAGTAGTGGAGCAGATC
1 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
20059884 ACACCAGATC
Statistics
Matches: 164, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 164 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (132 bp):
AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGAGGATTTTACCTCC
CTGAGATTACAGTAGAGTACACTAAAGCCAGTAGTTCTATCTCCCTGGGCAGCAGTGGAATAGAT
TG
Found at i:20059903 original size:40 final size:40
Alignment explanation
Indices: 20059848--20060171 Score: 345
Period size: 40 Copynumber: 7.8 Consensus size: 40
20059838 TTGAAGATTG
*
20059848 CAGATCTTATCTCCCTAAGGAGTAGTGGAGCAGATCACAC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACAC
*
20059888 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACAT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACAC
* * *
20059928 CA-AGTCTTATCTCCCTAAGCAGTAGTGGAGTAGATGAAAGAAAC
1 CAGA-TCTTATCTCCCTAAGCAGTAGTGGAGCAGAT----CACAC
* * *
20059972 CAG-TCTTATCTCCCTAAGTAGTAGTGGAACAGA-CGAAAAAAC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC----ACAC
*
20060014 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACAT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACAC
*
20060054 CA-AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAAC
1 CAGA-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-----ACAC
* * *
20060098 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGCAT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACAC
20060138 CA-AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 CAGA-TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
20060172 CGAAAGAAAC
Statistics
Matches: 242, Mismatches: 21, Indels: 42
0.79 0.07 0.14
Matches are distributed among these distances:
39 4 0.02
40 136 0.56
42 7 0.03
43 55 0.23
44 38 0.16
45 2 0.01
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (40 bp):
CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACAC
Found at i:20060035 original size:126 final size:125
Alignment explanation
Indices: 20059848--20060171 Score: 503
Period size: 126 Copynumber: 2.6 Consensus size: 125
20059838 TTGAAGATTG
* *
20059848 CAGATCTTATCTCCCTAAGGAGTAGTGGAGCAGATC-ACACCAGATCTTATCTCCCTAAGCAGTA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAACCAGATCTTATCTCCCTAAGCAGTA
* *
20059912 GTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGTAGATGAAAGAAAC
66 GTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
* *
20059972 CAG-TCTTATCTCCCTAAGTAGTAGTGGAACAGA-CGAAAAAACCAGATCTTATCTCCCTAAGCA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG---AAACCAGATCTTATCTCCCTAAGCA
20060035 GTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
63 GTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
* * * *
20060098 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGCATCAAG-TCTTATCTCCCTAAGCAGTA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAACCAGATCTTATCTCCCTAAGCAGTA
20060162 GTGGAGCAGA
66 GTGGAGCAGA
20060172 CGAAAGAAAC
Statistics
Matches: 183, Mismatches: 11, Indels: 12
0.89 0.05 0.06
Matches are distributed among these distances:
122 1 0.01
123 28 0.15
124 33 0.18
125 4 0.02
126 88 0.48
127 27 0.15
128 2 0.01
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (125 bp):
CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAACCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
Found at i:20060210 original size:84 final size:84
Alignment explanation
Indices: 20059848--20060193 Score: 438
Period size: 84 Copynumber: 4.2 Consensus size: 84
20059838 TTGAAGATTG
* * *
20059848 CAGATCTTATCTCCCTAAGGAGTAGTGGAGCAGATCACA-CCAGATCTTATCTCCCTAAGCAGTA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCACATCAAG-TCTTATCTCCCTAAGCAGTA
* *
20059912 GTGGAGCAGATC---A-CATC
65 GTGGAGCAGA-CGAAAGAAAC
* * * * * * * *
20059929 AAG-TCTTATCTCCCTAAGCAGTAGTGGAGTAGATGAAAGAAACCAGTCTTATCTCCCTAAGTAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAAT--CA-CATCAAGTCTTATCTCCCTAAGCAG
*
20059993 TAGTGGAACAGACGAAA-AAAC
63 TAGTGGAGCAGACGAAAGAAAC
*
20060014 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCACATCAAGTCTTATCTCCCTAAGCAGTAG
20060079 TGGAGCAGACGAAAGAAAC
66 TGGAGCAGACGAAAGAAAC
*
20060098 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGCATCAAGTCTTATCTCCCTAAGCAGTAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCACATCAAGTCTTATCTCCCTAAGCAGTAG
20060163 TGGAGCAGACGAAAGAAAC
66 TGGAGCAGACGAAAGAAAC
*
20060182 CA-ATCCTATCTC
1 CAGATCTTATCTC
20060194 ATTGAAGTTG
Statistics
Matches: 236, Mismatches: 20, Indels: 16
0.87 0.07 0.06
Matches are distributed among these distances:
80 29 0.12
81 2 0.01
82 2 0.01
83 75 0.32
84 93 0.39
85 5 0.02
86 30 0.13
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.23
Consensus pattern (84 bp):
CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCACATCAAGTCTTATCTCCCTAAGCAGTAG
TGGAGCAGACGAAAGAAAC
Found at i:20074687 original size:5 final size:5
Alignment explanation
Indices: 20074663--20074716 Score: 58
Period size: 5 Copynumber: 11.0 Consensus size: 5
20074653 AACATGTAAG
* * *
20074663 AAAAT AAAAA AAACAG AAAAT AAAAT -ATAT -AAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAA-AT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
20074712 AAAAT
1 AAAAT
20074717 TAGGCTACCT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
4 6 0.14
5 32 0.76
6 4 0.10
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:20078443 original size:12 final size:12
Alignment explanation
Indices: 20078426--20078456 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
20078416 AAATAATATC
20078426 ATAATAATCCTA
1 ATAATAATCCTA
20078438 ATAATAATCCTA
1 ATAATAATCCTA
*
20078450 AAAATAA
1 ATAATAA
20078457 AATTTGAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (12 bp):
ATAATAATCCTA
Found at i:20084682 original size:45 final size:45
Alignment explanation
Indices: 20084618--20084823 Score: 303
Period size: 45 Copynumber: 4.6 Consensus size: 45
20084608 TTTGAGTACT
20084618 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTAGCTACACTTA
*
20084663 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAAC-TTAGCTACACTTA
* *
20084709 TCTGATCAAGTGAAAAAGTGATAAGTGGT-AGTCTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAACT-TAGCTACACTTA
* * *
20084754 TCTGATCAAGTGACAAAGTGATAAGTGATAGCCTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTAGCTACACTTA
20084799 TCTGATC-AG-GA-ACAAGTGATAAGTG
1 TCTGATCAAGTGACA-AAGTGATAAGTG
20084824 ATCATACGTA
Statistics
Matches: 148, Mismatches: 9, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
42 1 0.01
43 14 0.09
44 3 0.02
45 89 0.60
46 41 0.28
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (45 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTAGCTACACTTA
Found at i:20084773 original size:91 final size:90
Alignment explanation
Indices: 20084618--20084823 Score: 328
Period size: 91 Copynumber: 2.3 Consensus size: 90
20084608 TTTGAGTACT
*
20084618 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTAGCTACACTTATCTGATCAAGTGACAAAGTG
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAACTTAGCTACACTTATCTGATCAAGTGACAAAGTG
* *
20084683 ATAAGTGGTAGCTTTAGCTACACTTA
66 ATAAGTGATAGC-CTAGCTACACTTA
*
20084709 TCTGATCAAGTGAAAAAGTGATAAGTGGT-AGTCTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAACT-TAGCTACACTTATCTGATCAAGTGACAAAGT
20084773 GATAAGTGATAGCCTAGCTACACTTA
65 GATAAGTGATAGCCTAGCTACACTTA
*
20084799 TCTGATC-AG-GAACAAGTGATAAGTG
1 TCTGATCAAGTGAAAAAGTGATAAGTG
20084824 ATCATACGTA
Statistics
Matches: 109, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
88 15 0.14
89 2 0.02
90 21 0.19
91 71 0.65
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (90 bp):
TCTGATCAAGTGAAAAAGTGATAAGTGGTAACTTAGCTACACTTATCTGATCAAGTGACAAAGTG
ATAAGTGATAGCCTAGCTACACTTA
Found at i:20103395 original size:13 final size:13
Alignment explanation
Indices: 20103377--20103402 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
20103367 CAGTGAGCAG
20103377 ATTCTGATAAAAT
1 ATTCTGATAAAAT
20103390 ATTCTGATAAAAT
1 ATTCTGATAAAAT
20103403 GTTATGCTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (13 bp):
ATTCTGATAAAAT
Found at i:20104497 original size:47 final size:47
Alignment explanation
Indices: 20104428--20104523 Score: 174
Period size: 47 Copynumber: 2.0 Consensus size: 47
20104418 TTGATCTTCA
*
20104428 AAAAAATATTTTATATTACTTATATTGTATGATTGAAAATTATAATT
1 AAAAAATATTTTATATTACTTATATTGTATGATTAAAAATTATAATT
*
20104475 AAAAAATATTTTATATTACTTATATTGTTTGATTAAAAATTATAATT
1 AAAAAATATTTTATATTACTTATATTGTATGATTAAAAATTATAATT
20104522 AA
1 AA
20104524 CACTACAAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.47
Consensus pattern (47 bp):
AAAAAATATTTTATATTACTTATATTGTATGATTAAAAATTATAATT
Found at i:20105105 original size:21 final size:21
Alignment explanation
Indices: 20105064--20105106 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
20105054 GATAAAGTAG
* *
20105064 ATTATTTATTATTTTTATAGT
1 ATTATATATTATATTTATAGT
20105085 ATTATATATTATGATTT-TAGT
1 ATTATATATTAT-ATTTATAGT
20105106 A
1 A
20105107 AATTCATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (21 bp):
ATTATATATTATATTTATAGT
Found at i:20105163 original size:38 final size:36
Alignment explanation
Indices: 20105085--20105186 Score: 89
Period size: 37 Copynumber: 2.8 Consensus size: 36
20105075 TTTTTATAGT
* *
20105085 ATTATATATTATGATTTTAGTAAATTCATATAAGAATA
1 ATTATATA-TATAATTTTATTAAATT-ATATAAGAATA
* * *
20105123 ATTATATATATTATTTTATTAAATTATATTTAATACTA
1 ATTATATATATAATTTTATTAAATTATA--TAAGAATA
* * *
20105161 ATTAAAT-TAAAATATTATTAAATTAT
1 ATTATATATATAATTTTATTAAATTAT
20105187 TTATTATTTT
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
36 3 0.06
37 31 0.57
38 20 0.37
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (36 bp):
ATTATATATATAATTTTATTAAATTATATAAGAATA
Found at i:20105354 original size:39 final size:39
Alignment explanation
Indices: 20105295--20105402 Score: 112
Period size: 44 Copynumber: 2.6 Consensus size: 39
20105285 TTTTTTCCTT
*
20105295 ATACTATTACAACATC-ATTCCATTCAACCAAACATAAT-A
1 ATACTATTACAGC-TCTATTCCATTCAACCAAACA-AATGA
*
20105334 ATACTATTACAGCTCTATTCCAATCCATTCAACCAAACAATTGA
1 ATACTATTACAGCTCTA-T----TCCATTCAACCAAACAAATGA
20105378 ATTACTATTACAGCTCTATTCCATT
1 A-TACTATTACAGCTCTATTCCATT
20105403 ACAGTGAACC
Statistics
Matches: 59, Mismatches: 2, Indels: 15
0.78 0.03 0.20
Matches are distributed among these distances:
38 2 0.03
39 13 0.22
40 7 0.12
43 2 0.03
44 19 0.32
45 16 0.27
ACGTcount: A:0.39, C:0.26, G:0.03, T:0.32
Consensus pattern (39 bp):
ATACTATTACAGCTCTATTCCATTCAACCAAACAAATGA
Found at i:20105395 original size:45 final size:44
Alignment explanation
Indices: 20105313--20105400 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 44
20105303 ACAACATCAT
20105313 TCCATTCAACCAAACATAATAATACTATTACAGCTCTATTCCAA
1 TCCATTCAACCAAACATAATAATACTATTACAGCTCTATTCCAA
*
20105357 TCCATTCAACCAAACA-ATTGAATTACTATTACAGCTCTATTCCA
1 TCCATTCAACCAAACATAAT-AA-TACTATTACAGCTCTATTCCA
20105401 TTACAGTGAA
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
43 2 0.05
44 18 0.44
45 21 0.51
ACGTcount: A:0.39, C:0.27, G:0.03, T:0.31
Consensus pattern (44 bp):
TCCATTCAACCAAACATAATAATACTATTACAGCTCTATTCCAA
Found at i:20109693 original size:27 final size:22
Alignment explanation
Indices: 20109643--20109688 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
20109633 ATATGTATGA
20109643 TACTAAACTAAAAAAACTAGAT
1 TACTAAACTAAAAAAACTAGAT
20109665 TACTAAACTAAAAAAACTAGAT
1 TACTAAACTAAAAAAACTAGAT
20109687 TA
1 TA
20109689 AATTATGAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.59, C:0.13, G:0.04, T:0.24
Consensus pattern (22 bp):
TACTAAACTAAAAAAACTAGAT
Found at i:20132042 original size:30 final size:30
Alignment explanation
Indices: 20132007--20132068 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
20131997 TATTTCTTAT
*
20132007 TTATTTAAAATCCTTTCTAAGACCAAAGAG
1 TTATTTAAAATCCTTTCTAAGACAAAAGAG
20132037 TTATTTAAAATCCTTTCTAAGACAAAAGAG
1 TTATTTAAAATCCTTTCTAAGACAAAAGAG
20132067 TT
1 TT
20132069 TGAATGAAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (30 bp):
TTATTTAAAATCCTTTCTAAGACAAAAGAG
Found at i:20133535 original size:27 final size:27
Alignment explanation
Indices: 20133505--20133635 Score: 181
Period size: 27 Copynumber: 4.9 Consensus size: 27
20133495 CCTTACAGGG
*
20133505 TTCACCACAAAGGCTACTATTTCATAT
1 TTCACCACAAAGGCTACTCTTTCATAT
* *
20133532 TTCACCACAAAGGCTACTCGTTCTTAT
1 TTCACCACAAAGGCTACTCTTTCATAT
**
20133559 TTTTCCACAAAGGCTACTCTTTCATAT
1 TTCACCACAAAGGCTACTCTTTCATAT
*
20133586 TTCGCCACAAAGGCTACTCTTTCATAT
1 TTCACCACAAAGGCTACTCTTTCATAT
* * *
20133613 TTCCCCAAAAAGGCTACTATTTC
1 TTCACCACAAAGGCTACTCTTTC
20133636 TTGACATGTT
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 92 1.00
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.34
Consensus pattern (27 bp):
TTCACCACAAAGGCTACTCTTTCATAT
Found at i:20138203 original size:40 final size:40
Alignment explanation
Indices: 20138140--20138225 Score: 127
Period size: 40 Copynumber: 2.1 Consensus size: 40
20138130 CTTAATTTTG
* * *
20138140 ACCTGATAATATCTCGATCGAAGGTCAATTTTTTAAAACA
1 ACCTTATAATATCCCGATCGAAGGTCAATTTTTGAAAACA
* *
20138180 ACCTTATAATATCCCGATTGAAGGTCAGTTTTTGAAAACA
1 ACCTTATAATATCCCGATCGAAGGTCAATTTTTGAAAACA
20138220 ACCTTA
1 ACCTTA
20138226 CTCTCTCGAG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.33
Consensus pattern (40 bp):
ACCTTATAATATCCCGATCGAAGGTCAATTTTTGAAAACA
Found at i:20158275 original size:10 final size:10
Alignment explanation
Indices: 20158252--20158297 Score: 67
Period size: 10 Copynumber: 4.7 Consensus size: 10
20158242 GGTATCTAAA
* *
20158252 AAATATATAG
1 AAATAAATAC
20158262 AAATAAATAC
1 AAATAAATAC
20158272 AAATAAATAC
1 AAATAAATAC
20158282 AAATAAATA-
1 AAATAAATAC
20158291 AAATAAA
1 AAATAAA
20158298 AATATAAACA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
9 7 0.21
10 27 0.79
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.22
Consensus pattern (10 bp):
AAATAAATAC
Found at i:20158300 original size:25 final size:24
Alignment explanation
Indices: 20158262--20158309 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
20158252 AAATATATAG
*
20158262 AAATAAATACAAATA-AATACAAAT
1 AAATAAATAAAAATATAA-ACAAAT
20158286 AAATAAAATAAAAATATAAACAAA
1 AAAT-AAATAAAAATATAAACAAA
20158310 ATACATTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 4 0.19
25 15 0.71
26 2 0.10
ACGTcount: A:0.75, C:0.06, G:0.00, T:0.19
Consensus pattern (24 bp):
AAATAAATAAAAATATAAACAAAT
Found at i:20160073 original size:50 final size:50
Alignment explanation
Indices: 20160009--20160387 Score: 238
Period size: 50 Copynumber: 7.6 Consensus size: 50
20159999 AACAAGATTA
* * *
20160009 GCCGTCGTGACTTCAATCTATTCCACTACACCGCCAGGGAAGTAAGATCC
1 GCCGTCGTGGCTTCAATCTTTTCCACTACAACGCCAGGGAAGTAAGATCC
* * ** * * * * * ** *
20160059 ACCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCTGGGAAACAAGATTC
1 GCCGTCGTGGCTTCAATCTTTTCCACTACAACGCCAGGGAAGTAAGATCC
* * * * * *
20160109 GCCGTCGTAGCTTCAATCTGTTCCACTGCACCGCTAGGGAAGTAAGATCT
1 GCCGTCGTGGCTTCAATCTTTTCCACTACAACGCCAGGGAAGTAAGATCC
* * * * * * *** * ***
20160159 ACCATTGTGGCTTCAATCCTTTT-AATTGCAATATCGGGGAAACCAGATCC
1 GCCGTCGTGGCTTCAAT-CTTTTCCACTACAACGCCAGGGAAGTAAGATCC
** * *
20160209 GCCGTCGAAGCTTCAATCTGTTCCACTACATCGCCAGGGAAGTAAGATCC
1 GCCGTCGTGGCTTCAATCTTTTCCACTACAACGCCAGGGAAGTAAGATCC
* * * ** * * * * ***
20160259 GCCATTGTGGCTTAAATCTTTTTAATTTTCAATGTCAGGGAAACCAGATCC
1 GCCGTCGTGGCTTCAATCTTTTCCA-CTACAACGCCAGGGAAGTAAGATCC
* * * *
20160310 GCTGTCGTAGCTTCAATCTATTCCACTACACCGCCAGGGAAGTAAGATCC
1 GCCGTCGTGGCTTCAATCTTTTCCACTACAACGCCAGGGAAGTAAGATCC
*
20160360 GCCGTTGTGGCTTCAATCTTTTCCACTA
1 GCCGTCGTGGCTTCAATCTTTTCCACTA
20160388 TAATGCTAAA
Statistics
Matches: 225, Mismatches: 101, Indels: 6
0.68 0.30 0.02
Matches are distributed among these distances:
49 4 0.02
50 183 0.81
51 38 0.17
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (50 bp):
GCCGTCGTGGCTTCAATCTTTTCCACTACAACGCCAGGGAAGTAAGATCC
Found at i:20160336 original size:101 final size:100
Alignment explanation
Indices: 20159979--20160381 Score: 549
Period size: 100 Copynumber: 4.0 Consensus size: 100
20159969 TTTCAAATTG
* * **
20159979 TTTAACTGCAATGTC-GAGGAAACAAGATTAGCCGTCGT-GACTTCAATCTATTCCACTACACCG
1 TTTAATTGCAATGTCAG-GGAAACCAGATCCGCCGTCGTAG-CTTCAATCTATTCCACTACACCG
*
20160042 CCAGGGAAGTAAGATCCACCGTTGTGGCTTCAATCTT
64 CCAGGGAAGTAAGATCCACCATTGTGGCTTCAATCTT
* * * * * *
20160079 TTTAATTGCAATGTCTGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTGCACCGCT
1 TTTAATTGCAATGTCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCACTACACCGCC
* *
20160144 AGGGAAGTAAGATCTACCATTGTGGCTTCAATCCT
66 AGGGAAGTAAGATCCACCATTGTGGCTTCAATCTT
* * * * *
20160179 TTTAATTGCAATATCGGGGAAACCAGATCCGCCGTCGAAGCTTCAATCTGTTCCACTACATCGCC
1 TTTAATTGCAATGTCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCACTACACCGCC
* *
20160244 AGGGAAGTAAGATCCGCCATTGTGGCTTAAATCTT
66 AGGGAAGTAAGATCCACCATTGTGGCTTCAATCTT
* *
20160279 TTTAATTTTCAATGTCAGGGAAACCAGATCCGCTGTCGTAGCTTCAATCTATTCCACTACACCGC
1 TTTAA-TTGCAATGTCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCACTACACCGC
* *
20160344 CAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTT
65 CAGGGAAGTAAGATCCACCATTGTGGCTTCAATCTT
20160380 TT
1 TT
20160382 CCACTATAAT
Statistics
Matches: 271, Mismatches: 29, Indels: 5
0.89 0.10 0.02
Matches are distributed among these distances:
100 181 0.67
101 90 0.33
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (100 bp):
TTTAATTGCAATGTCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCACTACACCGCC
AGGGAAGTAAGATCCACCATTGTGGCTTCAATCTT
Found at i:20160683 original size:88 final size:88
Alignment explanation
Indices: 20160580--20160752 Score: 240
Period size: 88 Copynumber: 2.0 Consensus size: 88
20160570 AAGGCGGTTT
* * *
20160580 TCTTCGACCTGCTTCACCGCCAGTACAGGAAGGCAAGATCTG-TCATTTTCAACCTACTCCACTG
1 TCTTCGACCTACTTCACCGCCAATACAGGAAGACAAGATCTGCT-ATTTTCAACCTACTCCACTG
20160644 CTACCTAAGGAGAAAAGGCTGGTA
65 CTACCTAAGGAGAAAAGGCTGGTA
* * *
20160668 TCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTATTCCACTGC
1 TCTTCGACCTACTTCACCGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGC
* * * *
20160733 TGCTTAGGGAGATAAGGCTG
66 TACCTAAGGAGAAAAGGCTG
20160753 AAGTTTCATC
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
88 73 0.99
89 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (88 bp):
TCTTCGACCTACTTCACCGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGC
TACCTAAGGAGAAAAGGCTGGTA
Found at i:20162022 original size:22 final size:23
Alignment explanation
Indices: 20161997--20162045 Score: 82
Period size: 22 Copynumber: 2.2 Consensus size: 23
20161987 CCTTAGCCTC
*
20161997 TTCATTTTTATTTTTTC-CATTT
1 TTCATTTTCATTTTTTCACATTT
20162019 TTCATTTTCATTTTTTCACATTT
1 TTCATTTTCATTTTTTCACATTT
20162042 TTCA
1 TTCA
20162046 CATCATCATT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 16 0.64
23 9 0.36
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.67
Consensus pattern (23 bp):
TTCATTTTCATTTTTTCACATTT
Found at i:20162051 original size:22 final size:22
Alignment explanation
Indices: 20162006--20162059 Score: 63
Period size: 25 Copynumber: 2.3 Consensus size: 22
20161996 CTTCATTTTT
**
20162006 ATTTTTTCCATTTTTCATTTTC
1 ATTTTTTCCATTTTTCATCATC
20162028 ATTTTTTCACATTTTTCACATCATC
1 ATTTTTTC-CATTTTT--CATCATC
20162053 ATTTTTT
1 ATTTTTT
20162060 TGCGACTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 8 0.30
23 7 0.26
25 12 0.44
ACGTcount: A:0.19, C:0.19, G:0.00, T:0.63
Consensus pattern (22 bp):
ATTTTTTCCATTTTTCATCATC
Found at i:20162588 original size:12 final size:12
Alignment explanation
Indices: 20162560--20162599 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
20162550 TTCTTTTTGG
20162560 TTTTTTGTTCT-
1 TTTTTTGTTCTC
20162571 TATTTTTGTTCTC
1 T-TTTTTGTTCTC
20162584 TTTTTT-TTC-C
1 TTTTTTGTTCTC
20162594 TTTTTT
1 TTTTTT
20162600 CATTGAATCT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
10 7 0.26
11 4 0.15
12 15 0.56
13 1 0.04
ACGTcount: A:0.03, C:0.12, G:0.05, T:0.80
Consensus pattern (12 bp):
TTTTTTGTTCTC
Found at i:20167697 original size:3 final size:3
Alignment explanation
Indices: 20167689--20167722 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
20167679 TATGTATTAA
*
20167689 AAT AAT AAT AAT AAA AAT AAT AAT -AT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
20167723 CAATTCAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:20171780 original size:469 final size:469
Alignment explanation
Indices: 20170898--20172309 Score: 2563
Period size: 469 Copynumber: 3.0 Consensus size: 469
20170888 CTAAATCGTA
*
20170898 TTTTTTAGGTTTGGAAGGGCTCGGAATTATTTTCACATCAAAACTGTACCAGGTGTATACCTAAA
1 TTTTTTAGGTTTGGAAGGGCTCGGAATTATTTTCGCATCAAAACTGTACCAGGTGTATACCTAAA
*
20170963 ACATGAGAAAATAAGGTTCGGCGAAAGCTAAAAATTTGGTCTGTCGACACCACACGGGCGTGTGG
66 ACATGAGAAAATAAGGTTCGGCGAAAGCTAAAAATTTGGTCTGTCGACGCCACACGGGCGTGTGG
* * **
20171028 TCGGTCGTGCGGCTGGCTGTGTGTGAGACGCAGCCATGTGACGGAGATTCAGTGGCCGTGTGGGC
131 CCGGTCGTGCGGCTGGCTGTGTGTGAGACGCAGCCATGTGATGGAGATTGTGTGGCCGTGTGGGC
* * * * * *
20171093 TACACGGGCTAGGCCGGATAGGGCGCGTGGGCCTAAAATTCTAAAAATTTCTTTAGGGTAGCACA
196 CACACGAGCTAGGCCGGATTGAGCGTGTGGGCCCAAAATTCTAAAAATTTCTTTAGGGTAGCACA
*
20171158 AGTCATTCCGATCGACGGTACGCCTACCGTAGGGTCGATAAGGGCTAACTAAACCCATTGTATGT
261 AGTCATTCCGATCGACTGTACGCCTACCGTAGGGTCGATAAGGGCTAACTAAACCCATTGTATGT
*
20171223 GATCTGTTAATCTAATAGTCTGATATGAGTAGGAAATCGATATATATGTCTGACTATTCTGCATA
326 GATCTGTTAATCTAATAGTCTGATCTGAGTAGGAAATCGATATATATGTCTGACTATTCTGCATA
20171288 AGTAAGTACAATATCTATATACGAGCATGTTAATCATGTGATTTTGTATCTGTTATCTGTTATTT
391 AGTAAGTACAATATCTATATACGAGCATGTTAATCATGTGATTTTGTATCTGTTATCTGTTATTT
20171353 GCATGATGTATCTG
456 GCATGATGTATCTG
*
20171367 TTTTTTAGGTTTGGAAGGGCTCGGAATTACTTTCGCATCAAAACTGTACCAGGTGTATACCTAAA
1 TTTTTTAGGTTTGGAAGGGCTCGGAATTATTTTCGCATCAAAACTGTACCAGGTGTATACCTAAA
*
20171432 ACATGATAAAATAAGGTTCGGCGAAAGCTAAAAATTTGGTCTGTCGACGCCACACGGGCGTGTGG
66 ACATGAGAAAATAAGGTTCGGCGAAAGCTAAAAATTTGGTCTGTCGACGCCACACGGGCGTGTGG
20171497 CCGGTCGTGCGGCTGGCTGTGTGTGAGACGCAGCCATGTGATGGAGATTGTGTGGCCGTGTGGGC
131 CCGGTCGTGCGGCTGGCTGTGTGTGAGACGCAGCCATGTGATGGAGATTGTGTGGCCGTGTGGGC
20171562 CACACGAGCTAGGCCGGATTGAGCGTGTGGGCCCAAAATTCTAAAAATTTCTTTAGGGTAGCACA
196 CACACGAGCTAGGCCGGATTGAGCGTGTGGGCCCAAAATTCTAAAAATTTCTTTAGGGTAGCACA
20171627 AGTCATTCCGATCGACTGTACGCCTACCGTAGGGTCGATAAGGGCTAACTAAACCCATTGTATGT
261 AGTCATTCCGATCGACTGTACGCCTACCGTAGGGTCGATAAGGGCTAACTAAACCCATTGTATGT
20171692 GATCTGTTAATCTAATAGTCTGATCTGAGTAGGAAATCGATATATATGTCTGACTATTCTGCATA
326 GATCTGTTAATCTAATAGTCTGATCTGAGTAGGAAATCGATATATATGTCTGACTATTCTGCATA
*
20171757 AGTAAGTACAATATCTGTATACGAGCATGTTAATCATGTGATTTTGTATCTGTTATCTGTTATTT
391 AGTAAGTACAATATCTATATACGAGCATGTTAATCATGTGATTTTGTATCTGTTATCTGTTATTT
20171822 GCATGATGTATCTG
456 GCATGATGTATCTG
*
20171836 TTTTTTAGGTTTGGAAGGGCTCGGAATTATTTTCGCATCAAAATTGTACCAGGTGTATACCTAAA
1 TTTTTTAGGTTTGGAAGGGCTCGGAATTATTTTCGCATCAAAACTGTACCAGGTGTATACCTAAA
*
20171901 ACATGAGAAAATAAGGTTCGGCGAAAGCTAAAAATTTGGTCTGTCGACGCCACACGGGCATGTGG
66 ACATGAGAAAATAAGGTTCGGCGAAAGCTAAAAATTTGGTCTGTCGACGCCACACGGGCGTGTGG
* *
20171966 CCGGTCGTGCGGCTGGCTGTGTGTGAGACGCAGCCATATGATGGAAATTGTGTGGCCGTGTGGGC
131 CCGGTCGTGCGGCTGGCTGTGTGTGAGACGCAGCCATGTGATGGAGATTGTGTGGCCGTGTGGGC
*
20172031 CACACGAGCTAGGCCGGATTAAGCGTGTGGGCCCAAAATTCTAAAAATTTCTTTAGGGTAGCACA
196 CACACGAGCTAGGCCGGATTGAGCGTGTGGGCCCAAAATTCTAAAAATTTCTTTAGGGTAGCACA
* * * * *
20172096 AGTCATTCCGATCGATTGTACGCCTATCATAGGGTCGATAAGGGCTAGCTAAACTCATTGTATGT
261 AGTCATTCCGATCGACTGTACGCCTACCGTAGGGTCGATAAGGGCTAACTAAACCCATTGTATGT
* *
20172161 GATTTGTTAATCTAATAGTCTGATCTGAGTAGGAAATCGATATATATGTCTGACTATTCTACATA
326 GATCTGTTAATCTAATAGTCTGATCTGAGTAGGAAATCGATATATATGTCTGACTATTCTGCATA
20172226 AGTAAGTACAATATCTATATACGAGCATGTTAATCATGTGATTTTGTATCTGTTATCTGTTATTT
391 AGTAAGTACAATATCTATATACGAGCATGTTAATCATGTGATTTTGTATCTGTTATCTGTTATTT
20172291 GCATGATGTATCTG
456 GCATGATGTATCTG
20172305 TTTTT
1 TTTTT
20172310 GGGGTGGGAT
Statistics
Matches: 911, Mismatches: 32, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
469 911 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (469 bp):
TTTTTTAGGTTTGGAAGGGCTCGGAATTATTTTCGCATCAAAACTGTACCAGGTGTATACCTAAA
ACATGAGAAAATAAGGTTCGGCGAAAGCTAAAAATTTGGTCTGTCGACGCCACACGGGCGTGTGG
CCGGTCGTGCGGCTGGCTGTGTGTGAGACGCAGCCATGTGATGGAGATTGTGTGGCCGTGTGGGC
CACACGAGCTAGGCCGGATTGAGCGTGTGGGCCCAAAATTCTAAAAATTTCTTTAGGGTAGCACA
AGTCATTCCGATCGACTGTACGCCTACCGTAGGGTCGATAAGGGCTAACTAAACCCATTGTATGT
GATCTGTTAATCTAATAGTCTGATCTGAGTAGGAAATCGATATATATGTCTGACTATTCTGCATA
AGTAAGTACAATATCTATATACGAGCATGTTAATCATGTGATTTTGTATCTGTTATCTGTTATTT
GCATGATGTATCTG
Found at i:20173498 original size:13 final size:11
Alignment explanation
Indices: 20173462--20173492 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
20173452 CCGCCTGTAT
20173462 TAATTTTTATA
1 TAATTTTTATA
*
20173473 TTATTTTTATA
1 TAATTTTTATA
20173484 TAATTTTTA
1 TAATTTTTA
20173493 AATATATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TAATTTTTATA
Found at i:20173650 original size:30 final size:30
Alignment explanation
Indices: 20173616--20173678 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
20173606 ACTTAACAAG
*
20173616 CAAATGCCTCTAAAATAATAATAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
*
20173646 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
20173676 CAA
1 CAA
20173679 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.57, C:0.14, G:0.03, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:20176389 original size:20 final size:18
Alignment explanation
Indices: 20176337--20176389 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 18
20176327 CAACCTGGTA
20176337 AAAAATATAAAAATTTGT
1 AAAAATATAAAAATTTGT
* *
20176355 AAAAATTAATTAAAATTTATT
1 AAAAA-T-ATAAAAATTT-GT
20176376 AAGAAATATAAAAA
1 AA-AAATATAAAAA
20176390 AATTGTAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
18 5 0.18
19 1 0.04
20 15 0.54
21 4 0.14
22 3 0.11
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (18 bp):
AAAAATATAAAAATTTGT
Found at i:20185154 original size:35 final size:35
Alignment explanation
Indices: 20185105--20185172 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
20185095 TCTTGTACTG
**
20185105 ACAATTATGTTAATACCAATCAAGTTAAGATTCTA
1 ACAATTATACTAATACCAATCAAGTTAAGATTCTA
** *
20185140 ACAATTATACTAATATTAATCGAGTTAAGATTC
1 ACAATTATACTAATACCAATCAAGTTAAGATTC
20185173 AGTAGGCTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.43, C:0.13, G:0.09, T:0.35
Consensus pattern (35 bp):
ACAATTATACTAATACCAATCAAGTTAAGATTCTA
Found at i:20185610 original size:21 final size:21
Alignment explanation
Indices: 20185567--20185645 Score: 70
Period size: 21 Copynumber: 3.8 Consensus size: 21
20185557 CATTTAATTA
* **
20185567 ATTTTTTAAAATTTAAAAAAT
1 ATTTTTTATAATTTTTAAAAT
** *
20185588 ATTTTTTATGCTTTTTAATAT
1 ATTTTTTATAATTTTTAAAAT
20185609 ATATTTTT-TAATTTTTAAAAT
1 AT-TTTTTATAATTTTTAAAAT
* *
20185630 AATTTTTATATTTTTT
1 ATTTTTTATAATTTTT
20185646 TAATTTTTAA
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
20 5 0.11
21 35 0.78
22 5 0.11
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (21 bp):
ATTTTTTATAATTTTTAAAAT
Found at i:20185622 original size:42 final size:41
Alignment explanation
Indices: 20185559--20185667 Score: 118
Period size: 42 Copynumber: 2.7 Consensus size: 41
20185549 CATGTTAACA
*
20185559 TTTAATTAATTTTTTAAAATTTAAAAAATATTTTTTATGCTT
1 TTTAATTAATTTTTT-AAATTTAAAAAATAATTTTTATGCTT
** *
20185601 TTTAATATATATTTTTT-AATTTTTAAAATAATTTTTAT-ATT
1 TTTAAT-TA-ATTTTTTAAATTTAAAAAATAATTTTTATGCTT
*
20185642 TTT--TTAATTTTTAAAATTTAAAAAAT
1 TTTAATTAATTTTTTAAATTTAAAAAAT
20185668 TTAATTAAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
37 6 0.11
38 12 0.21
39 1 0.02
41 5 0.09
42 24 0.42
43 2 0.04
44 7 0.12
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (41 bp):
TTTAATTAATTTTTTAAATTTAAAAAATAATTTTTATGCTT
Found at i:20187458 original size:5 final size:5
Alignment explanation
Indices: 20187448--20187480 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
20187438 TGTGCCAATA
*
20187448 AAAAT AAAAT -ATAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
20187481 CTTTAGTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
4 3 0.12
5 22 0.88
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:20187805 original size:299 final size:292
Alignment explanation
Indices: 20187235--20187785 Score: 620
Period size: 299 Copynumber: 1.9 Consensus size: 292
20187225 GTTTAGGTTT
* *
20187235 AAATCTCACCATACTCATATTTTTATTGGTTTTTTAATAAAAAGACTAAAGTACTCTCAAATAAT
1 AAATCCCACCATACTCATATTTTTATTGGTTTTTTAATAAAAAGACTAAAGTACCCTCAAATAAT
* * *
20187300 ATTACTTATTTTAATTAGAGAATGACATTCTCATAACTTTCTCACTGAGTTGGTGACCCATTGAT
66 ATTACTTATTTTAATTAGAGAATGACATTCTCATAACTTCCTAACCGAGTTGGTGACCCATTGAT
* * * *
20187365 GGCACCTCAACTAGTCACCAACTTAGTCAGGAGCTTAAGGAATAGTGTAGATATACAACTGAAGG
131 GGCA-CT-AAC-AG-CACCAACTTAGTCAGGAGCTTAAAGAATAATATAAATATACAACTGAAGG
* * * *
20187430 TAATAAAGTGTGCCAATAAAAATAAAATATATAAAATAAAATAAAATAAAACTTTAGTTGAATGG
192 TAATAAAGTGTACCAATAAAAATAAAATATATAAAATAAAAAAAAATAAAACTTAAATTGAAT-G
*
20187495 TAAATTATTTTTTTACTAATGCAATTGATGTGGCTTC
256 CAAATTATTTTTTTACTAATGCAATTGATGTGGCTTC
* *
20187532 AAATCCCACCATA-TGCATATTTTTATTGGTTTTTTAAAGTGAAAAA-ATTAGAA-TACCCTCGA
1 AAATCCCACCATACT-CATATTTTTATTGGTTTTTT-AA-T-AAAAAGACTA-AAGTACCCTCAA
20187594 ATAATATTACTTATTTTAATTA-AGGAATGACATTC-CTATAACTTCCTAACCGAGTTGGTGACC
61 ATAATATTACTTATTTTAATTAGA-GAATGACATTCTC-ATAACTTCCTAACCGAGTTGGTGACC
* * * *
20187657 CGATTGA-GG-A-T-A-A-CACTAACTTAGTGAGGAGCTTAAATAATAATATAAATATACAATTG
124 C-ATTGATGGCACTAACAGCACCAACTTAGTCAGGAGCTTAAAGAATAATATAAATATACAACTG
* * * *
20187716 ATTGAGGTAATAAAGTGTACATAATAAAATTAACATGTATAAAAATATAAAAATAAATAAAAGCT
188 A---AGGTAATAAAGTGTAC-CAATAAAAATAAAATATAT-AAAATA-AAAAA-AAATAAAA-CT
20187781 TAAAT
245 TAAAT
20187786 CTCATCAAAC
Statistics
Matches: 215, Mismatches: 23, Indels: 31
0.80 0.09 0.12
Matches are distributed among these distances:
290 39 0.18
292 1 0.00
293 15 0.07
294 16 0.07
295 6 0.03
296 6 0.03
297 40 0.19
298 10 0.05
299 70 0.33
300 12 0.06
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (292 bp):
AAATCCCACCATACTCATATTTTTATTGGTTTTTTAATAAAAAGACTAAAGTACCCTCAAATAAT
ATTACTTATTTTAATTAGAGAATGACATTCTCATAACTTCCTAACCGAGTTGGTGACCCATTGAT
GGCACTAACAGCACCAACTTAGTCAGGAGCTTAAAGAATAATATAAATATACAACTGAAGGTAAT
AAAGTGTACCAATAAAAATAAAATATATAAAATAAAAAAAAATAAAACTTAAATTGAATGCAAAT
TATTTTTTTACTAATGCAATTGATGTGGCTTC
Found at i:20191025 original size:28 final size:28
Alignment explanation
Indices: 20190993--20191092 Score: 146
Period size: 28 Copynumber: 3.6 Consensus size: 28
20190983 TAATGAGATT
20190993 AGCACTAAGTGTGCGAGTTTAATTGTAA
1 AGCACTAAGTGTGCGAGTTTAATTGTAA
* *
20191021 AGCACTAAGTGTGCTAGTTTAATGGTAA
1 AGCACTAAGTGTGCGAGTTTAATTGTAA
* * *
20191049 AGCACTAAGTGTGCGAGTTTGATTATTA
1 AGCACTAAGTGTGCGAGTTTAATTGTAA
*
20191077 AGCAATAAGTGTGCGA
1 AGCACTAAGTGTGCGA
20191093 ACTTATTAAA
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 64 1.00
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTAATTGTAA
Found at i:20196694 original size:17 final size:17
Alignment explanation
Indices: 20196674--20196706 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
20196664 CATAAACATT
20196674 CGAATGGATTAAATCTC
1 CGAATGGATTAAATCTC
20196691 CGAATGGATTAAATCT
1 CGAATGGATTAAATCT
20196707 AACACTTGCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.30
Consensus pattern (17 bp):
CGAATGGATTAAATCTC
Found at i:20203099 original size:21 final size:21
Alignment explanation
Indices: 20203070--20203112 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
20203060 AGAACACGCC
* *
20203070 AACATAAGCTCGTGAGAGCTG
1 AACAGAAGCTCGTAAGAGCTG
20203091 AACAGAAGCTCGTAAGAGCTG
1 AACAGAAGCTCGTAAGAGCTG
20203112 A
1 A
20203113 TCCACCCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.37, C:0.19, G:0.28, T:0.16
Consensus pattern (21 bp):
AACAGAAGCTCGTAAGAGCTG
Found at i:20204965 original size:23 final size:22
Alignment explanation
Indices: 20204951--20204995 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
20204941 CCCTGAAACC
20204951 CGAAAACAAAAAACCCTCAAAA
1 CGAAAACAAAAAACCCTCAAAA
* *
20204973 CGTAAACAAAAAATTCCTCAAAA
1 CGAAAACAAAAAA-CCCTCAAAA
20204996 GTGTTATGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.60, C:0.24, G:0.04, T:0.11
Consensus pattern (22 bp):
CGAAAACAAAAAACCCTCAAAA
Found at i:20206123 original size:6 final size:7
Alignment explanation
Indices: 20206102--20206132 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
20206092 TTATTCAATC
20206102 TTTGTTT
1 TTTGTTT
20206109 TTTGTTT
1 TTTGTTT
20206116 TTTGTTT
1 TTTGTTT
*
20206123 TTTATTT
1 TTTGTTT
20206130 TTT
1 TTT
20206133 TATAACATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.03, C:0.00, G:0.10, T:0.87
Consensus pattern (7 bp):
TTTGTTT
Found at i:20208433 original size:16 final size:16
Alignment explanation
Indices: 20208397--20208436 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
20208387 TTTAATTTTT
* *
20208397 TATAAATATATAAATCA
1 TATAAA-ATAAAAAACA
20208414 TATAAAATAAAAAACA
1 TATAAAATAAAAAACA
20208430 TATAAAA
1 TATAAAA
20208437 ACAATTTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.28
Consensus pattern (16 bp):
TATAAAATAAAAAACA
Found at i:20208695 original size:3 final size:3
Alignment explanation
Indices: 20208687--20208727 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
20208677 AATATAGTTA
20208687 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
20208728 CAACAATATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:20208851 original size:27 final size:27
Alignment explanation
Indices: 20208815--20208893 Score: 106
Period size: 27 Copynumber: 2.9 Consensus size: 27
20208805 CGAAGCGGGT
*
20208815 GTGGTGCCTATCTGATAGGCGGCACTA
1 GTGGTCCCTATCTGATAGGCGGCACTA
* *
20208842 GTGAG-CCCTATATGATAGGCGGCACTG
1 GTG-GTCCCTATCTGATAGGCGGCACTA
*
20208869 GTGGTGCCTATCTGATAGGCGGCAC
1 GTGGTCCCTATCTGATAGGCGGCAC
20208894 ACCTAGTATA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
26 1 0.02
27 43 0.96
28 1 0.02
ACGTcount: A:0.19, C:0.23, G:0.34, T:0.24
Consensus pattern (27 bp):
GTGGTCCCTATCTGATAGGCGGCACTA
Found at i:20212194 original size:62 final size:62
Alignment explanation
Indices: 20212118--20212273 Score: 267
Period size: 62 Copynumber: 2.5 Consensus size: 62
20212108 CAATGTACCT
20212118 AATTTATATTACAAAGTTTGTTCCAATTTTTAATATTGTAATGTATTTAATTTATATAACAA
1 AATTTATATTACAAAGTTTGTTCCAATTTTTAATATTGTAATGTATTTAATTTATATAACAA
* *
20212180 AATTTATATTACAAAGCTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAACAA
1 AATTTATATTACAAAGTTTGTTCCAATTTTTAATATTGTAATGTATTTAATTTATATAACAA
* * *
20212242 AATTTATATTACAAACTTTGTTACAAGTTTTA
1 AATTTATATTACAAAGTTTGTTCCAATTTTTA
20212274 GTGTTTTAAT
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 88 1.00
ACGTcount: A:0.38, C:0.08, G:0.07, T:0.47
Consensus pattern (62 bp):
AATTTATATTACAAAGTTTGTTCCAATTTTTAATATTGTAATGTATTTAATTTATATAACAA
Found at i:20212702 original size:33 final size:33
Alignment explanation
Indices: 20212617--20212716 Score: 112
Period size: 33 Copynumber: 3.0 Consensus size: 33
20212607 ACTTGAGTCG
20212617 AGAGGAGTGCCATACTGCGGTGGATACGACCCA
1 AGAGGAGTGCCATACTGCGGTGGATACGACCCA
* * * **
20212650 AGAGAAGTG-GAGTAATGCGGTGGATACGGGCCA
1 AGAGGAGTGCCA-TACTGCGGTGGATACGACCCA
* * *
20212683 GGAGGAGCGCCATACTGCGGTGGATATGACCCA
1 AGAGGAGTGCCATACTGCGGTGGATACGACCCA
20212716 A
1 A
20212717 AGATATCAAA
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
32 1 0.02
33 49 0.96
34 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.37, T:0.15
Consensus pattern (33 bp):
AGAGGAGTGCCATACTGCGGTGGATACGACCCA
Found at i:20212861 original size:18 final size:18
Alignment explanation
Indices: 20212840--20212875 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
20212830 TTCGGCTATG
*
20212840 GCTCGAGCTTGGGCTCTA
1 GCTCGAGCTTGGCCTCTA
*
20212858 GCTCTAGCTTGGCCTCTA
1 GCTCGAGCTTGGCCTCTA
20212876 TATCAGGCAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.31, G:0.28, T:0.31
Consensus pattern (18 bp):
GCTCGAGCTTGGCCTCTA
Found at i:20213527 original size:14 final size:14
Alignment explanation
Indices: 20213508--20213542 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
20213498 CAAATTACAT
20213508 GTTAGAACAGTATC
1 GTTAGAACAGTATC
*
20213522 GTTAGAATAGTATC
1 GTTAGAACAGTATC
*
20213536 ATTAGAA
1 GTTAGAA
20213543 AAAATAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.40, C:0.09, G:0.20, T:0.31
Consensus pattern (14 bp):
GTTAGAACAGTATC
Found at i:20215190 original size:16 final size:16
Alignment explanation
Indices: 20215169--20215199 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
20215159 ACCTAAAACA
*
20215169 TACATAACAAATAAAT
1 TACATAAAAAATAAAT
20215185 TACATAAAAAATAAA
1 TACATAAAAAATAAA
20215200 ACATTTTTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.10, G:0.00, T:0.23
Consensus pattern (16 bp):
TACATAAAAAATAAAT
Found at i:20220307 original size:30 final size:29
Alignment explanation
Indices: 20220252--20220309 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
20220242 ACCAATTAGA
* *
20220252 CATTTATACTTTAATTGGCTTCAAATAAG
1 CATTTAAACTTTAATTGGATTCAAATAAG
*
20220281 CATTTAAACTTTAATTGATATTCAAATAA
1 CATTTAAACTTTAATTG-GATTCAAATAA
20220310 AATAAATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 16 0.64
30 9 0.36
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.41
Consensus pattern (29 bp):
CATTTAAACTTTAATTGGATTCAAATAAG
Found at i:20229116 original size:105 final size:105
Alignment explanation
Indices: 20228988--20229197 Score: 386
Period size: 105 Copynumber: 2.0 Consensus size: 105
20228978 TTAGATTTGC
*
20228988 AACACTGACCAGAAAACTAAAAAGTATCAACTACCTC-AATCACGAGTTTTACCTATTAGGTCCA
1 AACACTGACCAGAAAACTAAAAAGTATCAACTACC-CAAATCACGAATTTTACCTATTAGGTCCA
*
20229052 ACAGATTTTCAACCACTGAATAAGTCGATTTTTACTAGCAG
65 ACAGATTTTCAACCACTGAATAAGTCAATTTTTACTAGCAG
20229093 AACACTGACCAGAAAACTAAAAAGTATCAACTACCCAAATCACGAATTTTACCTATTAGGTCCAA
1 AACACTGACCAGAAAACTAAAAAGTATCAACTACCCAAATCACGAATTTTACCTATTAGGTCCAA
20229158 CAGATTTTCAACCACTGAATAAGTCAATTTTTACTAGCAG
66 CAGATTTTCAACCACTGAATAAGTCAATTTTTACTAGCAG
20229198 CTTTGTGGCA
Statistics
Matches: 102, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
104 1 0.01
105 101 0.99
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.26
Consensus pattern (105 bp):
AACACTGACCAGAAAACTAAAAAGTATCAACTACCCAAATCACGAATTTTACCTATTAGGTCCAA
CAGATTTTCAACCACTGAATAAGTCAATTTTTACTAGCAG
Found at i:20229407 original size:3 final size:3
Alignment explanation
Indices: 20229401--20229461 Score: 97
Period size: 3 Copynumber: 20.3 Consensus size: 3
20229391 CCATAAAGAA
*
20229401 CAT CAT C-T ACAT CGT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT -CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
20229446 CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT C
20229462 TTCACTTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
2 1 0.02
3 52 0.96
4 1 0.02
ACGTcount: A:0.31, C:0.34, G:0.02, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:20235065 original size:19 final size:19
Alignment explanation
Indices: 20235037--20235075 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
20235027 TGTCACTCAA
20235037 TTAAAATTTTATT-TTATTT
1 TTAAAATTTT-TTCTTATTT
*
20235056 TTAAACTTTTTTCTTATTT
1 TTAAAATTTTTTCTTATTT
20235075 T
1 T
20235076 AATATCGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (19 bp):
TTAAAATTTTTTCTTATTT
Found at i:20235191 original size:20 final size:19
Alignment explanation
Indices: 20235148--20235191 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
20235138 TATATTTTCA
20235148 TTTAAATTTAAATAAAAAT
1 TTTAAATTTAAATAAAAAT
* * *
20235167 ATTAAATTTATTATTAAAAT
1 TTTAAATTTA-AATAAAAAT
20235187 TTTAA
1 TTTAA
20235192 TTCAAGTCTC
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
TTTAAATTTAAATAAAAAT
Found at i:20247681 original size:27 final size:27
Alignment explanation
Indices: 20247650--20247709 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
20247640 CCTCTCATTC
*
20247650 AATTTTGATTCCTAAACTTAATTCCTT
1 AATTTTGATTCCCAAACTTAATTCCTT
20247677 AATTTTGATTCCCAAACTTAATTCCTT
1 AATTTTGATTCCCAAACTTAATTCCTT
20247704 AGATTT
1 A-ATTT
20247710 CTGTCATTCC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 27 0.87
28 4 0.13
ACGTcount: A:0.30, C:0.18, G:0.05, T:0.47
Consensus pattern (27 bp):
AATTTTGATTCCCAAACTTAATTCCTT
Found at i:20247830 original size:20 final size:20
Alignment explanation
Indices: 20247807--20247851 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
20247797 GTTTTTCAGG
20247807 TTTTCAATCAAACATTCAAT
1 TTTTCAATCAAACATTCAAT
** * *
20247827 TTTTCGTTCGAACTTTCAAT
1 TTTTCAATCAAACATTCAAT
20247847 TTTTC
1 TTTTC
20247852 GTCAACTACG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.27, C:0.20, G:0.04, T:0.49
Consensus pattern (20 bp):
TTTTCAATCAAACATTCAAT
Found at i:20252641 original size:14 final size:16
Alignment explanation
Indices: 20252609--20252647 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
20252599 AATTACAATT
20252609 TAAATATTTATAAAAA
1 TAAATATTTATAAAAA
*
20252625 TAAA-ATTT-TAAACA
1 TAAATATTTATAAAAA
20252639 TAAATATTT
1 TAAATATTT
20252648 CGTTTATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 9 0.43
15 8 0.38
16 4 0.19
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (16 bp):
TAAATATTTATAAAAA
Found at i:20254096 original size:49 final size:49
Alignment explanation
Indices: 20254014--20254107 Score: 154
Period size: 49 Copynumber: 1.9 Consensus size: 49
20254004 ATGGAAGTAG
*
20254014 ATATAAATTTAACTTTCTCCATTTATTTTCATATTAAACACAAATTTTT
1 ATATAAATTTAACTTTCTCCATTTATTTTCATATCAAACACAAATTTTT
*
20254063 ATATAAATTTAACTTTCTCTATTT-TTTTGCATATCAAACACAAAT
1 ATATAAATTTAACTTTCTCCATTTATTTT-CATATCAAACACAAAT
20254108 GTTCAAACAA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
48 4 0.10
49 38 0.90
ACGTcount: A:0.37, C:0.15, G:0.01, T:0.47
Consensus pattern (49 bp):
ATATAAATTTAACTTTCTCCATTTATTTTCATATCAAACACAAATTTTT
Found at i:20259540 original size:23 final size:22
Alignment explanation
Indices: 20259506--20259548 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
20259496 TTAAACTGTG
20259506 TTTTATAGTTTTTAATAAATTTT
1 TTTTATAGTTTTTAA-AAATTTT
20259529 TTTTACTA-TTTTTAAAAATT
1 TTTTA-TAGTTTTTAAAAATT
20259549 AATTTAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 5 0.26
23 12 0.63
24 2 0.11
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (22 bp):
TTTTATAGTTTTTAAAAATTTT
Found at i:20268261 original size:7 final size:7
Alignment explanation
Indices: 20268245--20268274 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
20268235 TTTGGATAAT
20268245 ATTT-AA
1 ATTTAAA
20268251 ATTTAAA
1 ATTTAAA
20268258 ATTTAAA
1 ATTTAAA
20268265 ATTTAAA
1 ATTTAAA
20268272 ATT
1 ATT
20268275 ATATTCTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.17
7 19 0.83
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (7 bp):
ATTTAAA
Found at i:20280034 original size:22 final size:21
Alignment explanation
Indices: 20280002--20280067 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 21
20279992 TGCACTAATG
* *
20280002 AACAGAAAGCACTGAAGTGTT
1 AACAGAGAGCACTGAAGTGCT
* *
20280023 ATACAGAGAGCACAGATGTGCT
1 A-ACAGAGAGCACTGAAGTGCT
*
20280045 AATCAGAGAGCACTGACGTGCT
1 AA-CAGAGAGCACTGAAGTGCT
20280067 A
1 A
20280068 GTAATCAGAT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
21 2 0.05
22 35 0.95
ACGTcount: A:0.38, C:0.18, G:0.26, T:0.18
Consensus pattern (21 bp):
AACAGAGAGCACTGAAGTGCT
Found at i:20280081 original size:25 final size:25
Alignment explanation
Indices: 20280044--20280122 Score: 113
Period size: 25 Copynumber: 3.2 Consensus size: 25
20280034 ACAGATGTGC
* * *
20280044 TAATCAGAGAGCACTGACGTGCTAG
1 TAATCAGATAGCACTAACGTGCTAA
*
20280069 TAATCAGATAGCACTAACGTACTAA
1 TAATCAGATAGCACTAACGTGCTAA
*
20280094 TAATCAGATAGCACCAACGTGCTAA
1 TAATCAGATAGCACTAACGTGCTAA
20280119 TAAT
1 TAAT
20280123 GAGAGAGCGC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (25 bp):
TAATCAGATAGCACTAACGTGCTAA
Found at i:20288084 original size:32 final size:30
Alignment explanation
Indices: 20288029--20288096 Score: 100
Period size: 32 Copynumber: 2.2 Consensus size: 30
20288019 GTATTTGACA
20288029 AATTATATATAAATTGTTCTATTTATATTT
1 AATTATATATAAATTGTTCTATTTATATTT
* *
20288059 TATTATATATAAATATGTATTTATTTATATTT
1 AATTATATATAAAT-TGT-TCTATTTATATTT
20288091 AATTAT
1 AATTAT
20288097 TTTGTTTGCT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 13 0.39
31 3 0.09
32 17 0.52
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.57
Consensus pattern (30 bp):
AATTATATATAAATTGTTCTATTTATATTT
Found at i:20297302 original size:21 final size:21
Alignment explanation
Indices: 20297276--20297315 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
20297266 TCCACAGATC
20297276 TATAATA-TTATAAATATATTT
1 TATAATATTTA-AAATATATTT
20297297 TATAATATTTAAAATATAT
1 TATAATATTTAAAATATAT
20297316 AAATATAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
TATAATATTTAAAATATATTT
Found at i:20315581 original size:24 final size:24
Alignment explanation
Indices: 20315554--20315605 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
20315544 TTAGTAAGTC
*
20315554 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
20315578 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
20315602 AAAT
1 AAAT
20315606 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:20317550 original size:24 final size:24
Alignment explanation
Indices: 20317523--20317574 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
20317513 TTAGTAAGTC
*
20317523 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
20317547 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
20317571 AAAT
1 AAAT
20317575 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:20326669 original size:19 final size:19
Alignment explanation
Indices: 20326598--20326676 Score: 58
Period size: 19 Copynumber: 4.1 Consensus size: 19
20326588 GTATTTTCAA
20326598 CTAGATGATGTATATTTTG
1 CTAGATGATGTATATTTTG
* *
20326617 CTA-ATGCT-TAGTTACTTT-
1 CTAGATGATGTA--TATTTTG
20326635 C-AGTATGATCTGTATATTTTG
1 CTAG-ATGA--TGTATATTTTG
*
20326656 CTAGATGATGTATATCTTG
1 CTAGATGATGTATATTTTG
20326675 CT
1 CT
20326677 GTTGAAGTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 18
0.67 0.07 0.26
Matches are distributed among these distances:
17 3 0.07
18 5 0.11
19 23 0.50
20 5 0.11
21 6 0.13
22 4 0.09
ACGTcount: A:0.24, C:0.11, G:0.18, T:0.47
Consensus pattern (19 bp):
CTAGATGATGTATATTTTG
Found at i:20333383 original size:13 final size:13
Alignment explanation
Indices: 20333364--20333413 Score: 64
Period size: 13 Copynumber: 3.8 Consensus size: 13
20333354 TTAATACTTT
20333364 GAAATGGTTATAC
1 GAAATGGTTATAC
* *
20333377 AAAATGGTTATAT
1 GAAATGGTTATAC
*
20333390 GAATTGGTTATAC
1 GAAATGGTTATAC
*
20333403 GAAATTGTTAT
1 GAAATGGTTAT
20333414 GTGAAATGAA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.38, C:0.04, G:0.20, T:0.38
Consensus pattern (13 bp):
GAAATGGTTATAC
Found at i:20333399 original size:26 final size:26
Alignment explanation
Indices: 20333363--20333471 Score: 85
Period size: 26 Copynumber: 4.2 Consensus size: 26
20333353 GTTAATACTT
20333363 TGAAATGGTTATACAAAATGGTTATA
1 TGAAATGGTTATACAAAATGGTTATA
* * * *
20333389 TGAATTGGTTATACGAAATTGTTATG
1 TGAAATGGTTATACAAAATGGTTATA
** * *
20333415 TGAAATGAATATA-AGAATTGATTATA
1 TGAAATGGTTATACA-AAATGGTTATA
* * **
20333441 TAGAAATAGATATACGTAATGGTTATA
1 T-GAAATGGTTATACAAAATGGTTATA
20333468 TGAA
1 TGAA
20333472 TCAGTTATAC
Statistics
Matches: 62, Mismatches: 18, Indels: 6
0.72 0.21 0.07
Matches are distributed among these distances:
26 43 0.69
27 19 0.31
ACGTcount: A:0.42, C:0.03, G:0.19, T:0.36
Consensus pattern (26 bp):
TGAAATGGTTATACAAAATGGTTATA
Found at i:20335052 original size:7 final size:8
Alignment explanation
Indices: 20335030--20335065 Score: 54
Period size: 9 Copynumber: 4.2 Consensus size: 8
20335020 GGGGTAATTT
20335030 TGTAAAAA
1 TGTAAAAA
20335038 TGTAAAAA
1 TGTAAAAA
20335046 TGTAAAAAA
1 TGT-AAAAA
20335055 TGTATAAAA
1 TGTA-AAAA
20335064 TG
1 TG
20335066 AATTTTTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 12 0.46
9 14 0.54
ACGTcount: A:0.58, C:0.00, G:0.14, T:0.28
Consensus pattern (8 bp):
TGTAAAAA
Found at i:20339270 original size:36 final size:35
Alignment explanation
Indices: 20339152--20339259 Score: 146
Period size: 36 Copynumber: 3.0 Consensus size: 35
20339142 ACTCTCTGTT
* *
20339152 TTGGTGTGTTTCAGTTGGACTAGCTCTT-TGGAGCCA
1 TTGGTGTGTTTCAGATGGATTAGCTCTTAT-GAG-CA
* *
20339188 TTGGTGTGTTTCGGATAGATTAGCTCTTATGAGCA
1 TTGGTGTGTTTCAGATGGATTAGCTCTTATGAGCA
20339223 TATGGTGTGTTTCAGATGGATTAGCTCTTATGAGCA
1 T-TGGTGTGTTTCAGATGGATTAGCTCTTATGAGCA
20339259 T
1 T
20339260 CTAATGTGTT
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
35 3 0.05
36 60 0.94
37 1 0.02
ACGTcount: A:0.19, C:0.13, G:0.29, T:0.40
Consensus pattern (35 bp):
TTGGTGTGTTTCAGATGGATTAGCTCTTATGAGCA
Found at i:20342073 original size:41 final size:42
Alignment explanation
Indices: 20342016--20342095 Score: 135
Period size: 41 Copynumber: 1.9 Consensus size: 42
20342006 AACCCGACCC
20342016 TTTAATTATTTTTCCTTTCA-TTTTCCTTGAAAAATTATTCT
1 TTTAATTATTTTTCCTTTCATTTTTCCTTGAAAAATTATTCT
* *
20342057 TTTAATTATTTTTCCTTTCATTTTTTCTTTAAAAATTAT
1 TTTAATTATTTTTCCTTTCATTTTTCCTTGAAAAATTAT
20342096 CCCGTTCACC
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
41 20 0.56
42 16 0.44
ACGTcount: A:0.25, C:0.12, G:0.01, T:0.61
Consensus pattern (42 bp):
TTTAATTATTTTTCCTTTCATTTTTCCTTGAAAAATTATTCT
Found at i:20342209 original size:20 final size:20
Alignment explanation
Indices: 20342158--20342211 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
20342148 CATCATCTAT
* *
20342158 TTCATTTTCTAACTGATCTC
1 TTCATCTTCTACCTGATCTC
20342178 TTCATCTTCTACCTGATCTC
1 TTCATCTTCTACCTGATCTC
20342198 TTCATCTTCTACCT
1 TTCATCTTCTACCT
20342212 CACTTCTATC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.17, C:0.31, G:0.04, T:0.48
Consensus pattern (20 bp):
TTCATCTTCTACCTGATCTC
Found at i:20343744 original size:23 final size:23
Alignment explanation
Indices: 20343713--20343770 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
20343703 GTTAAACATT
*
20343713 TATACAAATATTCTTATTTATATAA
1 TATA-AAATATTCATATTT-TATAA
*
20343738 T-TAAAATATTCATATTTTATAC
1 TATAAAATATTCATATTTTATAA
20343760 TATAAAATATT
1 TATAAAATATT
20343771 TATTATTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 5 0.17
23 22 0.73
24 2 0.07
25 1 0.03
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (23 bp):
TATAAAATATTCATATTTTATAA
Found at i:20343777 original size:24 final size:25
Alignment explanation
Indices: 20343713--20343777 Score: 66
Period size: 23 Copynumber: 2.7 Consensus size: 25
20343703 GTTAAACATT
*
20343713 TATACAAATA-TTCTTATTTATATAA
1 TATA-AAATATTTATTATTTATATAA
* *
20343738 T-TAAAATATTCA-TATTT-TATAC
1 TATAAAATATTTATTATTTATATAA
20343760 TATAAAATATTTATTATT
1 TATAAAATATTTATTATT
20343778 AAATATTGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
22 5 0.15
23 20 0.61
24 7 0.21
25 1 0.03
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (25 bp):
TATAAAATATTTATTATTTATATAA
Found at i:20343950 original size:15 final size:15
Alignment explanation
Indices: 20343925--20343971 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
20343915 ATCTGCTTTT
20343925 TTAATAATATTAAATA
1 TTAA-AATATTAAATA
**
20343941 TTAAAATATTTTATA
1 TTAAAATATTAAATA
*
20343956 TTAATAT-TTAAATA
1 TTAAAATATTAAATA
20343970 TT
1 TT
20343972 TTTTAAAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
14 7 0.27
15 15 0.58
16 4 0.15
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TTAAAATATTAAATA
Found at i:20343963 original size:21 final size:22
Alignment explanation
Indices: 20343931--20343973 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
20343921 TTTTTTAATA
20343931 ATATTAAATATTAAAATATTTT
1 ATATTAAATATTAAAATATTTT
*
20343953 ATATT-AATATTTAAATATTTT
1 ATATTAAATATTAAAATATTTT
20343974 TTAAAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
ATATTAAATATTAAAATATTTT
Found at i:20343983 original size:22 final size:21
Alignment explanation
Indices: 20343936--20343980 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
20343926 TAATAATATT
*
20343936 AAATATTAAAATATTTTATAT
1 AAATATTAAAATATTTTATAA
* * *
20343957 TAATATTTAAATATTTTTTAA
1 AAATATTAAAATATTTTATAA
20343978 AAA
1 AAA
20343981 ATAATATTAA
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
AAATATTAAAATATTTTATAA
Found at i:20347770 original size:10 final size:10
Alignment explanation
Indices: 20347757--20347783 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
20347747 AACTGTAAAA
20347757 ATTAATTTTT
1 ATTAATTTTT
20347767 ATTAATTTTT
1 ATTAATTTTT
20347777 ATTAATT
1 ATTAATT
20347784 GAATGACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
ATTAATTTTT
Found at i:20350893 original size:18 final size:18
Alignment explanation
Indices: 20350870--20350919 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
20350860 AATGCCAAAA
20350870 TGGTATCGATATTGGTTT
1 TGGTATCGATATTGGTTT
20350888 TGGTATCGATATTGGTTT
1 TGGTATCGATATTGGTTT
*
20350906 TGGTATCAATATTG
1 TGGTATCGATATTG
20350920 ATACTTATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.20, C:0.06, G:0.26, T:0.48
Consensus pattern (18 bp):
TGGTATCGATATTGGTTT
Found at i:20351392 original size:116 final size:116
Alignment explanation
Indices: 20351188--20351401 Score: 349
Period size: 116 Copynumber: 1.8 Consensus size: 116
20351178 TGTTACATCA
*
20351188 ATACCCTTGGCTGGGTACCGATACTATTTTTAGCTTCAGTGTTTTAAAAATACTTCATTTAAGTT
1 ATACCCTTGGCTGGGTACCGATACTATTTTTAGCTTCAGTGTTTTAAAAATACTTCATTTAAGTC
* * *
20351253 ACATGTATTGATACCTTTCATGTGGTATTGATATTTTTCCAAAAAGTATCG
66 ACAGGTATTGATACATTTCATGTGGTATCGATATTTTTCCAAAAAGTATCG
* * *
20351304 ATACCCTTGGGTGGGTACCGATACTGTTTTTAGTTTCAGTGTTTTAAAAATACTTCATTTAAGTC
1 ATACCCTTGGCTGGGTACCGATACTATTTTTAGCTTCAGTGTTTTAAAAATACTTCATTTAAGTC
20351369 ACAGGTATTGATACATGTT-ATGTGGTATCGATA
66 ACAGGTATTGATACAT-TTCATGTGGTATCGATA
20351402 CCTATTGCAA
Statistics
Matches: 90, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
116 88 0.98
117 2 0.02
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (116 bp):
ATACCCTTGGCTGGGTACCGATACTATTTTTAGCTTCAGTGTTTTAAAAATACTTCATTTAAGTC
ACAGGTATTGATACATTTCATGTGGTATCGATATTTTTCCAAAAAGTATCG
Found at i:20356620 original size:36 final size:36
Alignment explanation
Indices: 20356573--20356643 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
20356563 TTTTTGGAAA
20356573 AAAAATTTGACGTTTATTTTTCTTCCTCTTCTGTTG
1 AAAAATTTGACGTTTATTTTTCTTCCTCTTCTGTTG
20356609 AAAAATTTGACGTTTATTTTTCTTCCTCTTCTGTT
1 AAAAATTTGACGTTTATTTTTCTTCCTCTTCTGTT
20356644 ATTTTTCCCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.20, C:0.17, G:0.10, T:0.54
Consensus pattern (36 bp):
AAAAATTTGACGTTTATTTTTCTTCCTCTTCTGTTG
Found at i:20357318 original size:31 final size:31
Alignment explanation
Indices: 20357283--20357360 Score: 111
Period size: 31 Copynumber: 2.5 Consensus size: 31
20357273 TGGGCGTATG
* *
20357283 GGCCCACACGGGCATGTTACACAAACGTGTA
1 GGCCCACACAGGCATGCTACACAAACGTGTA
*
20357314 GGCCCACACAGGCATGCTACACGAACGTGTA
1 GGCCCACACAGGCATGCTACACAAACGTGTA
* *
20357345 GGCCCATACAGTCATG
1 GGCCCACACAGGCATG
20357361 TGTAATACCC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.28, C:0.31, G:0.26, T:0.15
Consensus pattern (31 bp):
GGCCCACACAGGCATGCTACACAAACGTGTA
Found at i:20358604 original size:18 final size:18
Alignment explanation
Indices: 20358581--20358617 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
20358571 TCATCATTAT
20358581 TATTAGTATTAT-TATTTA
1 TATTAGT-TTATATATTTA
20358599 TATTAGTTTATATATTTA
1 TATTAGTTTATATATTTA
20358617 T
1 T
20358618 CTACATATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
TATTAGTTTATATATTTA
Found at i:20360031 original size:18 final size:17
Alignment explanation
Indices: 20359998--20360036 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
20359988 TTGTATAAAT
20359998 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
20360016 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
20360033 TGTG
1 TGTG
20360037 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:20360289 original size:23 final size:23
Alignment explanation
Indices: 20360262--20360359 Score: 153
Period size: 23 Copynumber: 4.3 Consensus size: 23
20360252 AGTGTTATTG
*
20360262 ATCAGTGGTAACTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
20360285 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
20360308 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
20360330 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
20360353 ATCAGTG
1 ATCAGTG
20360360 TGGCACTTAT
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
22 20 0.29
23 48 0.71
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:20360328 original size:45 final size:45
Alignment explanation
Indices: 20360264--20360352 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
20360254 TGTTATTGAT
* *
20360264 CAGTGGTAACTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAACTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
*
20360309 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAACTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
20360353 ATCAGTGTGG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.31
Consensus pattern (45 bp):
CAGTGGTAACTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Done.