Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 73 of 144
Found at i:21977093 original size:25 final size:25
Alignment explanation
Indices: 21977065--21977131 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
21977055 AACTGTCTTT
* *
21977065 GATAGTATATTCTGAAACTGCTATA
1 GATAGTATATACTGAAACTACTATA
* *
21977090 GATAGTATATACTGAGACTATTATA
1 GATAGTATATACTGAAACTACTATA
21977115 GATAG-ACTATACTGAAA
1 GATAGTA-TATACTGAAA
21977132 ACACTTAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
24 1 0.03
25 35 0.97
ACGTcount: A:0.40, C:0.10, G:0.16, T:0.33
Consensus pattern (25 bp):
GATAGTATATACTGAAACTACTATA
Found at i:21982424 original size:17 final size:18
Alignment explanation
Indices: 21982402--21982436 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
21982392 ATTTGGGCTA
21982402 TGTGGGC-CACACGGGCG
1 TGTGGGCTCACACGGGCG
21982419 TGTGGGCTCACACGGGCG
1 TGTGGGCTCACACGGGCG
21982437 AACATTATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.11, C:0.29, G:0.46, T:0.14
Consensus pattern (18 bp):
TGTGGGCTCACACGGGCG
Found at i:21983418 original size:18 final size:16
Alignment explanation
Indices: 21983397--21983430 Score: 50
Period size: 18 Copynumber: 2.0 Consensus size: 16
21983387 GTTTTGAAAT
21983397 TGAATAACTATTTGTAAA
1 TGAATAA-TATTT-TAAA
21983415 TGAATAATATTTTAAA
1 TGAATAATATTTTAAA
21983431 AACAAATGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 5 0.31
18 7 0.44
ACGTcount: A:0.47, C:0.03, G:0.09, T:0.41
Consensus pattern (16 bp):
TGAATAATATTTTAAA
Found at i:21989498 original size:63 final size:63
Alignment explanation
Indices: 21989431--21989635 Score: 243
Period size: 63 Copynumber: 3.3 Consensus size: 63
21989421 TCGCAAATAA
*
21989431 TGAGTCACATGGCCTGGACACGCACCCGTGTCTCTAGCCCATGTGGTCCCTAATGGCAAACAG
1 TGAGTCACATGGCCTGGACACACACCCGTGTCTCTAGCCCATGTGGTCCCTAATGGCAAACAG
* ** ** * **
21989494 TGAGTCGCACAGCCTGGACACATGCTCAAGTCTCTAGCCCATGTGGTCCCTAATGGCAAACAG
1 TGAGTCACATGGCCTGGACACACACCCGTGTCTCTAGCCCATGTGGTCCCTAATGGCAAACAG
* * * ** *
21989557 TGAGTTGCACA--GCCTGGACACACACCTGTGTCTCTGGCCCCTGTGGTCTTTAATGGAAAACAG
1 TGAG-T-CACATGGCCTGGACACACACCCGTGTCTCTAGCCCATGTGGTCCCTAATGGCAAACAG
21989620 TGAGTCACATGGCCTG
1 TGAGTCACATGGCCTG
21989636 CCACACGACC
Statistics
Matches: 117, Mismatches: 21, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
61 4 0.03
62 1 0.01
63 108 0.92
64 1 0.01
65 3 0.03
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (63 bp):
TGAGTCACATGGCCTGGACACACACCCGTGTCTCTAGCCCATGTGGTCCCTAATGGCAAACAG
Found at i:21990666 original size:19 final size:19
Alignment explanation
Indices: 21990642--21990754 Score: 181
Period size: 19 Copynumber: 5.8 Consensus size: 19
21990632 AATTTTTGAG
21990642 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
21990661 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
21990680 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
21990699 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
**
21990720 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
21990739 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
21990755 ATATATGATT
Statistics
Matches: 86, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
19 67 0.78
21 19 0.22
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:21990709 original size:59 final size:59
Alignment explanation
Indices: 21990643--21990754 Score: 197
Period size: 59 Copynumber: 1.9 Consensus size: 59
21990633 ATTTTTGAGG
*
21990643 ATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGATATACAATCCTAGATATGATATGCAATCTTAGATATGAT
* *
21990702 ATATGCAATCTTAGATATGATATATAATCTTAGATATGATATGCAATCTTAGA
1 ATATGCAATCTTAGATATGATATACAATCCTAGATATGATATGCAATCTTAGA
21990755 ATATATGATT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
59 50 1.00
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (59 bp):
ATATGCAATCTTAGATATGATATACAATCCTAGATATGATATGCAATCTTAGATATGAT
Found at i:21991417 original size:24 final size:24
Alignment explanation
Indices: 21991373--21991445 Score: 67
Period size: 24 Copynumber: 2.9 Consensus size: 24
21991363 GTAATTATTT
*
21991373 TTATTTTATTTTATTTATATATAA
1 TTATTTTATTTTATATATATATAA
* *
21991397 TTATTTTA-TTTATAATCTATATATG
1 TTATTTTATTTTAT-ATATATATA-A
*
21991422 TTATATTTATCTTTGTATATATAT
1 TTAT-TTTAT-TTTATATATATAT
21991446 GTATGTATAC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
23 5 0.13
24 15 0.38
25 4 0.10
26 4 0.10
27 7 0.18
28 4 0.10
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.63
Consensus pattern (24 bp):
TTATTTTATTTTATATATATATAA
Found at i:21992239 original size:98 final size:98
Alignment explanation
Indices: 21992115--21992306 Score: 339
Period size: 98 Copynumber: 2.0 Consensus size: 98
21992105 CTAAAAACAA
* *
21992115 TAAAGGAAATATTCCAAGTTTAGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCAAGTTTAGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
21992180 TTAAATCTTGGATAAGTGGATGTTCTTTTGAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTGAAG
* * *
21992213 TAAAGGAAATATTCCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCAAGTTTAGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
21992278 TTAAATCTTGGATAAGTGGATGTTCTTTT
66 TTAAATCTTGGATAAGTGGATGTTCTTTT
21992307 AAAATTTTAT
Statistics
Matches: 89, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 89 1.00
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.38
Consensus pattern (98 bp):
TAAAGGAAATATTCCAAGTTTAGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTGAAG
Found at i:21995848 original size:23 final size:23
Alignment explanation
Indices: 21995814--21995875 Score: 74
Period size: 22 Copynumber: 2.7 Consensus size: 23
21995804 AACTTTTTTA
21995814 AAATTTTGTAATTATTTTTAATTT
1 AAATTTT-TAATTATTTTTAATTT
* *
21995838 ATATTTTTAATTA-TTTTGATTT
1 AAATTTTTAATTATTTTTAATTT
*
21995860 AAATATTTAA-TATTTT
1 AAATTTTTAATTATTTT
21995876 CATTCATTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 2 0.06
22 19 0.58
23 6 0.18
24 6 0.18
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (23 bp):
AAATTTTTAATTATTTTTAATTT
Found at i:21996797 original size:19 final size:18
Alignment explanation
Indices: 21996758--21996805 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
21996748 TTTGAAAAAA
*
21996758 ATATTAAATGTCAAATTG
1 ATATTAAATATCAAATTG
21996776 ATATTAAA-ATCAAACTTAG
1 ATATTAAATATCAAA-TT-G
*
21996795 ATATCAAATAT
1 ATATTAAATAT
21996806 TAACCTTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 5 0.20
18 10 0.40
19 8 0.32
20 2 0.08
ACGTcount: A:0.50, C:0.08, G:0.06, T:0.35
Consensus pattern (18 bp):
ATATTAAATATCAAATTG
Found at i:21997491 original size:9 final size:9
Alignment explanation
Indices: 21997477--21997507 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
21997467 TGTGAAATAA
21997477 TTTTTATAT
1 TTTTTATAT
21997486 TTTTTATAT
1 TTTTTATAT
*
21997495 TTTATATAT
1 TTTTTATAT
21997504 TTTT
1 TTTT
21997508 AATTTCAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTTTATAT
Found at i:21997499 original size:16 final size:16
Alignment explanation
Indices: 21997478--21997512 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
21997468 GTGAAATAAT
21997478 TTTTATAT-TTTTTATA
1 TTTTATATATTTTTA-A
21997494 TTTTATATATTTTTAA
1 TTTTATATATTTTTAA
21997510 TTT
1 TTT
21997513 CAAAATAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTTATATATTTTTAA
Found at i:21998143 original size:25 final size:25
Alignment explanation
Indices: 21998109--21998161 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
21998099 ATATATAAGG
21998109 TAGTTTTTGAATCCCAAGATTCAGT
1 TAGTTTTTGAATCCCAAGATTCAGT
*
21998134 TAGTTTTTGAATCCCAAGATTCGGT
1 TAGTTTTTGAATCCCAAGATTCAGT
21998159 TAG
1 TAG
21998162 ATAACAAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (25 bp):
TAGTTTTTGAATCCCAAGATTCAGT
Found at i:21998827 original size:42 final size:42
Alignment explanation
Indices: 21998762--21998872 Score: 168
Period size: 42 Copynumber: 2.6 Consensus size: 42
21998752 CGGCCTAGAC
*
21998762 ACACACCCATGTCCTTGCCCGTGTGGCTCACACAGCCTGGAC
1 ACACACCCATGTCCTTGCCCGTGTGGCTCACACAGCCTGGAA
* **
21998804 ATACGGCCATGTCCTTGCCCGTGTGGCTCACACAGCCTGGAA
1 ACACACCCATGTCCTTGCCCGTGTGGCTCACACAGCCTGGAA
*
21998846 ACACACCCATGTCCTCTACCCGTGTGG
1 ACACACCCATGTCCT-TGCCCGTGTGG
21998873 TTTACATAGC
Statistics
Matches: 60, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 50 0.83
43 10 0.17
ACGTcount: A:0.19, C:0.38, G:0.23, T:0.21
Consensus pattern (42 bp):
ACACACCCATGTCCTTGCCCGTGTGGCTCACACAGCCTGGAA
Found at i:22000937 original size:24 final size:23
Alignment explanation
Indices: 22000894--22000938 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
22000884 TGAATAAAAT
22000894 TAAAATTATTTATATTTATTTGA
1 TAAAATTATTTATATTTATTTGA
22000917 TAAAA-TATTTATTTATTTATTT
1 TAAAATTATTTA--TATTTATTT
22000939 TATATACATC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 6 0.30
23 5 0.25
24 9 0.45
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (23 bp):
TAAAATTATTTATATTTATTTGA
Found at i:22001209 original size:13 final size:13
Alignment explanation
Indices: 22001191--22001225 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
22001181 ATTTATAAAA
22001191 TTTTAAAAATATT
1 TTTTAAAAATATT
*
22001204 TTTT-AAAATTTT
1 TTTTAAAAATATT
22001216 TTTTAAAAAT
1 TTTTAAAAAT
22001226 TTTGAAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
TTTTAAAAATATT
Found at i:22001214 original size:10 final size:10
Alignment explanation
Indices: 22001122--22001217 Score: 56
Period size: 10 Copynumber: 9.5 Consensus size: 10
22001112 ATTATTATTA
22001122 TTTTTAAAA-
1 TTTTTAAAAT
* *
22001131 ATTTTGAAAT
1 TTTTTAAAAT
*
22001141 TTATTTAATA-
1 TT-TTTAAAAT
*
22001151 TTTTTATAA-
1 TTTTTAAAAT
22001160 TTTTTAATAAT
1 TTTTTAA-AAT
22001171 TCTTTTACAAA-
1 T-TTTTA-AAAT
*
22001182 TTTATAAAAT
1 TTTTTAAAAT
**
22001192 TTTAAAAATAT
1 TTTTTAAA-AT
22001203 TTTTTAAAAT
1 TTTTTAAAAT
22001213 TTTTT
1 TTTTT
22001218 TTAAAAATTT
Statistics
Matches: 67, Mismatches: 12, Indels: 15
0.71 0.13 0.16
Matches are distributed among these distances:
9 21 0.31
10 23 0.34
11 15 0.22
12 7 0.10
13 1 0.01
ACGTcount: A:0.40, C:0.02, G:0.01, T:0.57
Consensus pattern (10 bp):
TTTTTAAAAT
Found at i:22001215 original size:9 final size:9
Alignment explanation
Indices: 22001121--22001216 Score: 57
Period size: 9 Copynumber: 9.7 Consensus size: 9
22001111 GATTATTATT
22001121 ATTTTTAAAA
1 ATTTTT-AAA
*
22001131 ATTTTGAAA
1 ATTTTTAAA
* *
22001140 TTTATTTAAT
1 ATT-TTTAAA
*
22001150 ATTTTTATA
1 ATTTTTAAA
22001159 ATTTTTAATA
1 ATTTTTAA-A
22001169 ATTCTTTTACAA
1 A-T-TTTTA-AA
*
22001181 ATTTATAAA
1 ATTTTTAAA
*
22001190 ATTTTAAAAA
1 ATTTT-TAAA
22001200 TATTTTTTAAA
1 -A-TTTTTAAA
22001211 ATTTTT
1 ATTTTT
22001217 TTTAAAAATT
Statistics
Matches: 66, Mismatches: 12, Indels: 17
0.69 0.13 0.18
Matches are distributed among these distances:
9 27 0.41
10 21 0.32
11 6 0.09
12 11 0.17
13 1 0.02
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.56
Consensus pattern (9 bp):
ATTTTTAAA
Found at i:22001226 original size:13 final size:13
Alignment explanation
Indices: 22001191--22001228 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
22001181 ATTTATAAAA
*
22001191 TTTTAAAAATATT
1 TTTTAAAAATTTT
22001204 TTTT-AAAATTTT
1 TTTTAAAAATTTT
22001216 TTTTAAAAATTTT
1 TTTTAAAAATTTT
22001229 GAAACAAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.48
13 12 0.52
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TTTTAAAAATTTT
Found at i:22001661 original size:18 final size:17
Alignment explanation
Indices: 22001638--22001687 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 17
22001628 ATGTAAGATA
*
22001638 ATTTTTATAAATTTATAT
1 ATTTTTATAAAATTA-AT
*
22001656 ATTTTTAAAAAATTAAT
1 ATTTTTATAAAATTAAT
22001673 ATTTTTATTAAAATT
1 ATTTTTA-TAAAATT
22001688 TGTCATGTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 9 0.32
18 19 0.68
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTTTTATAAAATTAAT
Found at i:22008458 original size:21 final size:21
Alignment explanation
Indices: 22008428--22008469 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
22008418 TGATCATCAC
22008428 CTTTTCAAAAAGTGTTGAATT
1 CTTTTCAAAAAGTGTTGAATT
*
22008449 CTTTTTAAAAAGTGTTGAATT
1 CTTTTCAAAAAGTGTTGAATT
22008470 GTTGTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.07, G:0.14, T:0.45
Consensus pattern (21 bp):
CTTTTCAAAAAGTGTTGAATT
Found at i:22008690 original size:16 final size:16
Alignment explanation
Indices: 22008671--22008705 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
22008661 ATGTTGTAGT
*
22008671 CAATATATTTTTCAAA
1 CAATATATTCTTCAAA
22008687 CAATATATTCTTCAAA
1 CAATATATTCTTCAAA
22008703 CAA
1 CAA
22008706 ATACGATTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.46, C:0.17, G:0.00, T:0.37
Consensus pattern (16 bp):
CAATATATTCTTCAAA
Found at i:22010049 original size:25 final size:27
Alignment explanation
Indices: 22010010--22010061 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 27
22010000 AAAAATTCAC
* *
22010010 TTAAACAAAATTTGTGTTAGTTTTATT
1 TTAAACAAAATTTGTGATAATTTTATT
22010037 TTAAA-AAAA-TTGTGATAATTTTATT
1 TTAAACAAAATTTGTGATAATTTTATT
22010062 GATGTAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 14 0.61
26 4 0.17
27 5 0.22
ACGTcount: A:0.38, C:0.02, G:0.10, T:0.50
Consensus pattern (27 bp):
TTAAACAAAATTTGTGATAATTTTATT
Found at i:22017258 original size:17 final size:18
Alignment explanation
Indices: 22017226--22017259 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
22017216 TGTACCAAAA
22017226 AAATTATAAATATATTTT
1 AAATTATAAATATATTTT
*
22017244 AAATT-TAAATTTATTT
1 AAATTATAAATATATTT
22017260 ATGTATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
AAATTATAAATATATTTT
Found at i:22029369 original size:69 final size:69
Alignment explanation
Indices: 22028614--22029411 Score: 509
Period size: 69 Copynumber: 11.6 Consensus size: 69
22028604 ATTAAGATTT
* *
22028614 GTAGGCGAAGAG-TCGTAGCCTCCAACACAGTTAGCGAGAGCAAAACTCCCAGC-ATTCATATTA
1 GTAGGCGAAGAGCT-GCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCCCAGCTA-TCATATTA
*
22028677 AGGTTC
64 AGGCTC
* * * * ** *
22028683 GCAAGCGAAGAG-TCGTAGCCTCCAACACAGTTAGCGAGAGAAAAATTCCCAACTATCATATTAA
1 GTAGGCGAAGAGCT-GCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCCCAGCTATCATATTAA
* *
22028747 GACTT
65 GGCTC
* * * * * * * *
22028752 GCAGGTGAAG-GCCGCAACCTCCAATACAATTAGCGAGAGTAAAGCTCCCAGTTATCATATTAAG
1 GTAGGCGAAGAGCTGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCCCAGCTATCATATTAAG
22028816 GCTC
66 GCTC
* * * * * * * * * *
22028820 GAAGGGGAATAACTACATCCTCCACCACAGTTAACGAGACCAAAGCTTCCAGCTATCATATTAAG
1 GTAGGCGAAGAGCTGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCCCAGCTATCATATTAAG
22028885 GCTC
66 GCTC
** * * * *
22028889 GTAGGCGAAGAGCCACAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCCTAGCTGTTATATTATG
1 GTAGGCGAAGAGCTGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCCCAGCTATCATATTAAG
*
22028954 GCTT
66 GCTC
* ** ** * * *
22028958 GTA--CAGAAAAAG-T-CATAGCCTCCAACGTAGTTAGTAAGAGCAAAGCTCCCAACTGTCATAC
1 GTAGGC-G-AAGAGCTGC--AGCCTCCAACACAGTTAGCGAGAGCAAAGCTCCCAGCTATCATAT
*
22029019 TAATGCTC
62 TAAGGCTC
** * ** * * * * * *
22029027 ACCA-GTGAAGAGCTGCAGTTTCTAACACAGTTAGCAAGAGTAAGGCTCCCAGTTGTCATATTAA
1 -GTAGGCGAAGAGCTGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCCCAGCTATCATATTAA
*
22029091 GGCTT
65 GGCTC
* * * * * * * * *
22029096 GTAGGCAAAAAGCCGCAACCTCTAACACAATTAGCGAGAGTAAAGCTCCTAGCTGTCATATTAAG
1 GTAGGCGAAGAGCTGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCCCAGCTATCATATTAAG
* *
22029161 GTTT
66 GCTC
** * ** * * * * *
22029165 ACAGGCGAAGAGCTACAATCTCCAACACAATTAGCGAGAGCAAAACTCCCAGCTGTCATACTGAG
1 GTAGGCGAAGAGCTGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCCCAGCTATCATATTAAG
*
22029230 GCTT
66 GCTC
* * * * * * * ** * *
22029234 GCCA-GCGAAGAGTTACAGCTTCCAACACAATTAGCAAGAGCAAAGCTCTCAATTTTTATATTAA
1 G-TAGGCGAAGAGCTGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCCCAGCTATCATATTAA
22029298 GGCTC
65 GGCTC
** * * * *
22029303 GTAGGCGAAGAGCTTTAGCCTCTAACACAGTTAACGAGAGCAAAGCTCCCAACTATCATACTAAG
1 GTAGGCGAAGAGCTGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCCCAGCTATCATATTAAG
22029368 GCTC
66 GCTC
* * * * * * *
22029372 GTTGGCTAAGAGCCGCAGCTTCAAACATAGTTAGTGAGAG
1 GTAGGCGAAGAGCTGCAGCCTCCAACACAGTTAGCGAGAG
22029412 TTGATGTGAC
Statistics
Matches: 565, Mismatches: 150, Indels: 28
0.76 0.20 0.04
Matches are distributed among these distances:
67 2 0.00
68 55 0.10
69 501 0.89
70 6 0.01
71 1 0.00
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.22
Consensus pattern (69 bp):
GTAGGCGAAGAGCTGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCCCAGCTATCATATTAAG
GCTC
Found at i:22032024 original size:25 final size:25
Alignment explanation
Indices: 22031992--22032058 Score: 118
Period size: 25 Copynumber: 2.7 Consensus size: 25
22031982 TTAAAATTTC
*
22031992 TTAA-TATTATAACATATTTTAACT
1 TTAACTATTATAATATATTTTAACT
22032016 TTAACTATTATAATATATTTTAACT
1 TTAACTATTATAATATATTTTAACT
22032041 TTAACTATTATAATATAT
1 TTAACTATTATAATATAT
22032059 AAATAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
24 4 0.10
25 37 0.90
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (25 bp):
TTAACTATTATAATATATTTTAACT
Found at i:22034702 original size:22 final size:21
Alignment explanation
Indices: 22034647--22034701 Score: 74
Period size: 22 Copynumber: 2.6 Consensus size: 21
22034637 ATACTAATAA
* *
22034647 TTAAAATTAAAATTTAAAATT
1 TTAAAATAAAAATTAAAAATT
*
22034668 TGTAATATAAAAATTAAAAATT
1 T-TAAAATAAAAATTAAAAATT
22034690 TTAAAATAAAAA
1 TTAAAATAAAAA
22034702 AAAAATAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 11 0.38
22 18 0.62
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (21 bp):
TTAAAATAAAAATTAAAAATT
Found at i:22034702 original size:23 final size:23
Alignment explanation
Indices: 22034655--22034720 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 23
22034645 AATTAAAATT
* *
22034655 AAAATTTAAAATTTGT--AATATA
1 AAAATTAAAAATTT-TAAAATAAA
22034677 AAAATTAAAAATTTTAAAATAAA
1 AAAATTAAAAATTTTAAAATAAA
* *
22034700 AAAA-AAATAAATTTCAAAATA
1 AAAATTAA-AAATTTTAAAATA
22034721 TGCGGGCTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
21 1 0.03
22 15 0.41
23 21 0.57
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (23 bp):
AAAATTAAAAATTTTAAAATAAA
Found at i:22041726 original size:17 final size:18
Alignment explanation
Indices: 22041706--22041739 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22041696 TATTAAAATT
*
22041706 TTTGTA-TTTTTAAAAAG
1 TTTGTACTTTTCAAAAAG
22041723 TTTGTACTTTTCAAAAA
1 TTTGTACTTTTCAAAAA
22041740 TAATATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.35, C:0.06, G:0.09, T:0.50
Consensus pattern (18 bp):
TTTGTACTTTTCAAAAAG
Found at i:22043002 original size:21 final size:22
Alignment explanation
Indices: 22042978--22043024 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
22042968 ATTATATAAA
*
22042978 ATAATATATTT-TAAATTCGGT
1 ATAATATATTTGAAAATTCGGT
* *
22042999 ATAATTTATTTGAAAATTTGGT
1 ATAATATATTTGAAAATTCGGT
22043021 ATAA
1 ATAA
22043025 GTTAATTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.47
Consensus pattern (22 bp):
ATAATATATTTGAAAATTCGGT
Found at i:22045556 original size:26 final size:26
Alignment explanation
Indices: 22045510--22045574 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
22045500 GTACTGGTAG
*
22045510 CTTTGCTGCGATACTGATACTAGCAA
1 CTTTGCTACGATACTGATACTAGCAA
* * *
22045536 CTTTGCTACGGTACT-ATTACTGGCAG
1 CTTTGCTACGATACTGA-TACTAGCAA
*
22045562 CTTTGTTACGATA
1 CTTTGCTACGATA
22045575 TTGGTGTATT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
25 1 0.03
26 31 0.97
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (26 bp):
CTTTGCTACGATACTGATACTAGCAA
Found at i:22046015 original size:20 final size:20
Alignment explanation
Indices: 22045990--22046029 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
22045980 CATTTATGTT
22045990 TGTTTAAAATTTTAATTGGG
1 TGTTTAAAATTTTAATTGGG
22046010 TGTTTAAAATTTTAATTGGG
1 TGTTTAAAATTTTAATTGGG
22046030 CTTTTGCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (20 bp):
TGTTTAAAATTTTAATTGGG
Found at i:22053194 original size:26 final size:25
Alignment explanation
Indices: 22053157--22053230 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 25
22053147 TATGGAGGAA
22053157 ATACTG-TACTGGCAGCTTTGCTGC
1 ATACTGATACTGGCAGCTTTGCTGC
*
22053181 GATACTGATACTGGCAGCTTTGTTGC
1 -ATACTGATACTGGCAGCTTTGCTGC
*
22053207 ATTACT-ATTACTGGCAGTTTTGCT
1 A-TACTGA-TACTGGCAGCTTTGCT
22053231 ATGATATTGG
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
25 8 0.19
26 35 0.81
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.38
Consensus pattern (25 bp):
ATACTGATACTGGCAGCTTTGCTGC
Found at i:22053387 original size:28 final size:26
Alignment explanation
Indices: 22053344--22053403 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 26
22053334 ACTGTATTGA
*
22053344 TACTGTAATGGACTAAGGCTTACACTG
1 TACTGTAATGGACTAAGGC-CACACTG
* *
22053371 TTACTGTATTGGGCTAAGGCCACACTG
1 -TACTGTAATGGACTAAGGCCACACTG
22053398 TACTGT
1 TACTGT
22053404 TACTGAATAG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 6 0.21
27 6 0.21
28 17 0.59
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (26 bp):
TACTGTAATGGACTAAGGCCACACTG
Found at i:22062983 original size:14 final size:14
Alignment explanation
Indices: 22062964--22062991 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
22062954 CATTTTGGTT
22062964 CTGAATATGCATGC
1 CTGAATATGCATGC
22062978 CTGAATATGCATGC
1 CTGAATATGCATGC
22062992 ATGGGGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (14 bp):
CTGAATATGCATGC
Found at i:22065615 original size:27 final size:28
Alignment explanation
Indices: 22065565--22065630 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
22065555 TATTAGATTT
* *
22065565 AAATATTTAATGTATATTTAAAATTTTA-
1 AAATATTTTATGTATAATTAAAA-TTTAC
22065593 AAATATTTTATGTATAATT-AAATTTAC
1 AAATATTTTATGTATAATTAAAATTTAC
*
22065620 AAATAATTTAT
1 AAATATTTTAT
22065631 TAACTGTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.12
27 13 0.38
28 17 0.50
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (28 bp):
AAATATTTTATGTATAATTAAAATTTAC
Found at i:22067079 original size:13 final size:14
Alignment explanation
Indices: 22067060--22067097 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
22067050 CAATGGCATA
22067060 GAAATAATATAAAC
1 GAAATAATATAAAC
22067074 -AAATAA-ATAAAC
1 GAAATAATATAAAC
22067086 GAAATGAATATA
1 GAAAT-AATATA
22067098 TAAAAAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 6 0.29
13 10 0.48
14 2 0.10
15 3 0.14
ACGTcount: A:0.66, C:0.05, G:0.08, T:0.21
Consensus pattern (14 bp):
GAAATAATATAAAC
Found at i:22067601 original size:18 final size:19
Alignment explanation
Indices: 22067570--22067608 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
22067560 TATTAGTTTT
*
22067570 TAAAAAAATAAAATGTACA
1 TAAAAAAATAAAATATACA
22067589 TAAAAAAAT-AAATATACA
1 TAAAAAAATAAAATATACA
22067607 TA
1 TA
22067609 TATATAGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.69, C:0.05, G:0.03, T:0.23
Consensus pattern (19 bp):
TAAAAAAATAAAATATACA
Found at i:22067663 original size:5 final size:6
Alignment explanation
Indices: 22067648--22067673 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
22067638 TAAAAGTTAC
22067648 AAAAAT AAAAAT AAAAAT AAAAAT AA
1 AAAAAT AAAAAT AAAAAT AAAAAT AA
22067674 TTACGTTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:22068878 original size:14 final size:14
Alignment explanation
Indices: 22068839--22068868 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
22068829 TAGGGTTTTT
22068839 GCCACT-GATTTGG
1 GCCACTGGATTTGG
22068852 GCCACTGGATTTGG
1 GCCACTGGATTTGG
22068866 GCC
1 GCC
22068869 TCTGTTTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.13, C:0.27, G:0.33, T:0.27
Consensus pattern (14 bp):
GCCACTGGATTTGG
Found at i:22069492 original size:44 final size:44
Alignment explanation
Indices: 22069431--22069545 Score: 142
Period size: 44 Copynumber: 2.6 Consensus size: 44
22069421 CTTGAGTCTG
* *
22069431 CTCCACTGCAACCTCAGGGAGATAAGACCT-GTGGTTTTAATCCA
1 CTCCACTGCAACTTCAGGGAGATAAGA-CTAGTGGCTTTAATCCA
* * * **
22069475 CTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTAGTGGCTTTAATCCA
*
22069519 CTCCACTACAACTTCAGGGAGATAAGA
1 CTCCACTGCAACTTCAGGGAGATAAGA
22069546 TTTGCCATCT
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 1 0.02
44 60 0.98
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTAGTGGCTTTAATCCA
Found at i:22069843 original size:50 final size:50
Alignment explanation
Indices: 22069789--22069979 Score: 125
Period size: 50 Copynumber: 3.8 Consensus size: 50
22069779 TGCTCCGCTA
* *
22069789 CAATGCCAGGGAAATAAGATTCGCCATTGCGGCTTCAATCTTTTAAATTG
1 CAATGCCAGGGAAATAAGATTCACCATTGCAGCTTCAATCTTTTAAATTG
*** * ** * *
22069839 CAATGTTGGGGAAATAAGATTCACC-TT-CATAGCTTCAATCTGTTCCACTA
1 CAATGCCAGGGAAATAAGATTCACCATTGC--AGCTTCAATCTTTTAAATTG
** * * * * * *
22069889 CACCGCCAGGGGAGTAAGATTCACCGTTACGGCTTCAATCTTTTTAATTG
1 CAATGCCAGGGAAATAAGATTCACCATTGCAGCTTCAATCTTTTAAATTG
*** * * * *
22069939 CAATGTTGGGGAAATAAAATTCGCCATCGTAGCTTCAATCT
1 CAATGCCAGGGAAATAAGATTCACCATTGCAGCTTCAATCT
22069980 ATTCCACTAC
Statistics
Matches: 100, Mismatches: 37, Indels: 8
0.69 0.26 0.06
Matches are distributed among these distances:
48 1 0.01
49 2 0.02
50 94 0.94
51 2 0.02
52 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.30
Consensus pattern (50 bp):
CAATGCCAGGGAAATAAGATTCACCATTGCAGCTTCAATCTTTTAAATTG
Found at i:22069925 original size:100 final size:100
Alignment explanation
Indices: 22069747--22070009 Score: 355
Period size: 100 Copynumber: 2.6 Consensus size: 100
22069737 CTTAACGTCA
* * * * * * ** * * *
22069747 GGGAGATAAGATTCATCGTCGTGGCTTCAATCTGCTCCGCTACAATGCCAGGGAAATAAGATTCG
1 GGGAAATAAGATTCACCATCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGGAGTAAGATTCA
*
22069812 CCATTGCGGCTTCAATCTTTTAAATTGCAATGTTG
66 CCATTACGGCTTCAATCTTTTAAATTGCAATGTTG
* *
22069847 GGGAAATAAGATTCACCTTCATAGCTTCAATCTGTTCCACTACACCGCCAGGGGAGTAAGATTCA
1 GGGAAATAAGATTCACCATCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGGAGTAAGATTCA
* *
22069912 CCGTTACGGCTTCAATCTTTTTAATTGCAATGTTG
66 CCATTACGGCTTCAATCTTTTAAATTGCAATGTTG
* * *
22069947 GGGAAATAAAATTCGCCATCGTAGCTTCAATCTATTCCACTACACCGCCAGGGGAGTAAGATT
1 GGGAAATAAGATTCACCATCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGGAGTAAGATT
22070010 TGTCATTGTA
Statistics
Matches: 143, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
100 143 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (100 bp):
GGGAAATAAGATTCACCATCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGGAGTAAGATTCA
CCATTACGGCTTCAATCTTTTAAATTGCAATGTTG
Found at i:22078326 original size:12 final size:12
Alignment explanation
Indices: 22078309--22078334 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
22078299 TCCCTTGAGA
22078309 TTCCATCATTTT
1 TTCCATCATTTT
22078321 TTCCATCATTTT
1 TTCCATCATTTT
22078333 TT
1 TT
22078335 GCTAAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.23, G:0.00, T:0.62
Consensus pattern (12 bp):
TTCCATCATTTT
Found at i:22081415 original size:22 final size:22
Alignment explanation
Indices: 22081390--22081453 Score: 94
Period size: 22 Copynumber: 3.0 Consensus size: 22
22081380 AATAAATACC
*
22081390 AAAAATTTATTTTAAAAAT-TA
1 AAAAAATTATTTTAAAAATATA
*
22081411 AAAAAATTATTTTAAAAATATT
1 AAAAAATTATTTTAAAAATATA
*
22081433 AAAAAAGTATTTTAAAAATAT
1 AAAAAATTATTTTAAAAATAT
22081454 TTTAAAATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
21 18 0.46
22 21 0.54
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (22 bp):
AAAAAATTATTTTAAAAATATA
Found at i:22081432 original size:11 final size:12
Alignment explanation
Indices: 22081412--22081460 Score: 59
Period size: 11 Copynumber: 4.3 Consensus size: 12
22081402 TAAAAATTAA
*
22081412 AAAAATTATTTT
1 AAAAAGTATTTT
*
22081424 AAAAA-TA-TTA
1 AAAAAGTATTTT
22081434 AAAAAGTATTTT
1 AAAAAGTATTTT
22081446 AAAAA-TATTTT
1 AAAAAGTATTTT
22081457 AAAA
1 AAAA
22081461 TTAAAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
10 7 0.21
11 14 0.42
12 12 0.36
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (12 bp):
AAAAAGTATTTT
Found at i:22081483 original size:42 final size:41
Alignment explanation
Indices: 22081424--22081511 Score: 149
Period size: 42 Copynumber: 2.1 Consensus size: 41
22081414 AAATTATTTT
*
22081424 AAAAATATTAAAAAAGTATTTTAAAAATATTTTAAAATTAA
1 AAAAAAATTAAAAAAGTATTTTAAAAATATTTTAAAATTAA
*
22081465 AAAAAAATTAAAAAAAGTATTTTAAAAGTATTTTAAAATTAA
1 AAAAAAATT-AAAAAAGTATTTTAAAAATATTTTAAAATTAA
22081507 AAAAA
1 AAAAA
22081512 TAAAAAAATA
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 8 0.18
42 36 0.82
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (41 bp):
AAAAAAATTAAAAAAGTATTTTAAAAATATTTTAAAATTAA
Found at i:22081491 original size:11 final size:11
Alignment explanation
Indices: 22081477--22081502 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
22081467 AAAAATTAAA
22081477 AAAAGTATTTT
1 AAAAGTATTTT
22081488 AAAAGTATTTT
1 AAAAGTATTTT
22081499 AAAA
1 AAAA
22081503 TTAAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:22082604 original size:13 final size:14
Alignment explanation
Indices: 22082585--22082622 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
22082575 CAATGGCATA
22082585 GAAATAATATAAAC
1 GAAATAATATAAAC
22082599 -AAATAA-ATAAAC
1 GAAATAATATAAAC
22082611 GAAATGAATATA
1 GAAAT-AATATA
22082623 TAAAAAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 6 0.29
13 10 0.48
14 2 0.10
15 3 0.14
ACGTcount: A:0.66, C:0.05, G:0.08, T:0.21
Consensus pattern (14 bp):
GAAATAATATAAAC
Found at i:22083128 original size:18 final size:20
Alignment explanation
Indices: 22083091--22083130 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
22083081 ATATTAGTTT
*
22083091 TAAAAAGAATAAAATGTACA
1 TAAAAAGAATAAAATATACA
22083111 TAAAAA-AAT-AAATATACA
1 TAAAAAGAATAAAATATACA
22083129 TA
1 TA
22083131 TATATATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 10 0.53
19 3 0.16
20 6 0.32
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.23
Consensus pattern (20 bp):
TAAAAAGAATAAAATATACA
Found at i:22084687 original size:14 final size:14
Alignment explanation
Indices: 22084635--22084688 Score: 54
Period size: 15 Copynumber: 3.7 Consensus size: 14
22084625 AAAAATTATT
22084635 TAAAAATCTAAAATA
1 TAAAAAT-TAAAATA
* *
22084650 TACAAATAAAAATTA
1 TAAAAATTAAAA-TA
*
22084665 AAAAAATTAAAATA
1 TAAAAATTAAAATA
*
22084679 TATAAATTAA
1 TAAAAATTAA
22084689 TTAAAAAAAT
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
14 14 0.45
15 17 0.55
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.28
Consensus pattern (14 bp):
TAAAAATTAAAATA
Found at i:22084690 original size:27 final size:28
Alignment explanation
Indices: 22084636--22084699 Score: 85
Period size: 27 Copynumber: 2.2 Consensus size: 28
22084626 AAAATTATTT
22084636 AAAAATCTAAAATATACAAATAAAAATTAA
1 AAAAAT-TAAAATATACAAAT-AAAATTAA
* *
22084666 AAAAATTAAAATATATAAAT-TAATTAA
1 AAAAATTAAAATATACAAATAAAATTAA
22084693 AAAAATT
1 AAAAATT
22084700 TTTGTCTTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
27 13 0.41
29 13 0.41
30 6 0.19
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (28 bp):
AAAAATTAAAATATACAAATAAAATTAA
Found at i:22092050 original size:29 final size:27
Alignment explanation
Indices: 22092001--22092059 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 27
22091991 AATCTATCCT
*
22092001 TTTTATTTATTTATTTATTATTTAACTAA
1 TTTTATTTATTTAGTTATTATTT--CTAA
*
22092030 TTTTATTTATTCTCGTT-TTATTTCTAA
1 TTTTATTTATT-TAGTTATTATTTCTAA
22092057 TTT
1 TTT
22092060 GTGTTTCTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 7 0.26
29 17 0.63
30 3 0.11
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.68
Consensus pattern (27 bp):
TTTTATTTATTTAGTTATTATTTCTAA
Found at i:22095414 original size:29 final size:29
Alignment explanation
Indices: 22095372--22095429 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
22095362 TTTCGCAAAG
22095372 GCTCGACATTGATTATGAAGAGACATATT
1 GCTCGACATTGATTATGAAGAGACATATT
22095401 GCTCGACATTGATTATGAAGAGACATATT
1 GCTCGACATTGATTATGAAGAGACATATT
22095430 CTCTTGTGGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (29 bp):
GCTCGACATTGATTATGAAGAGACATATT
Found at i:22109884 original size:12 final size:13
Alignment explanation
Indices: 22109868--22109906 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
22109858 TTTATTTGTT
22109868 TTTTGTTTTAATA
1 TTTTGTTTTAATA
*
22109881 -TTTGTTTTAAAA
1 TTTTGTTTTAATA
22109893 TTTTGTATTTAATA
1 TTTTGT-TTTAATA
22109907 AAATAAGCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 11 0.50
13 5 0.23
14 6 0.27
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (13 bp):
TTTTGTTTTAATA
Found at i:22128499 original size:27 final size:27
Alignment explanation
Indices: 22128469--22128592 Score: 88
Period size: 27 Copynumber: 4.6 Consensus size: 27
22128459 GAGCTTCCTT
*
22128469 GTGTTTTCTGTCTTGACAGACTACCCC
1 GTGTTTACTGTCTTGACAGACTACCCC
* * ** *
22128496 GTGTTTACTATCTCGATGGACTATCCC
1 GTGTTTACTGTCTTGACAGACTACCCC
* * ** *
22128523 GTG-TTAGCTATCTCGATGGACTACCTC
1 GTGTTTA-CTGTCTTGACAGACTACCCC
* * *
22128550 ATGTTTACTGTCTTGGCAGACTACACC
1 GTGTTTACTGTCTTGACAGACTACCCC
**
22128577 GTGTTTGTTGTCTTGA
1 GTGTTTACTGTCTTGA
22128593 TGGACTTTGT
Statistics
Matches: 75, Mismatches: 20, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
26 3 0.04
27 69 0.92
28 3 0.04
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (27 bp):
GTGTTTACTGTCTTGACAGACTACCCC
Found at i:22130627 original size:20 final size:20
Alignment explanation
Indices: 22130597--22130661 Score: 85
Period size: 20 Copynumber: 3.2 Consensus size: 20
22130587 AAAGCATCAT
22130597 AGTGCTGAATAGAGGCACCAA
1 AGTG-TGAATAGAGGCACCAA
*
22130618 AGTGTGAATAGAGGCATCAA
1 AGTGTGAATAGAGGCACCAA
** *
22130638 AGTGCAAACAGAGGCACCAA
1 AGTGTGAATAGAGGCACCAA
22130658 AGTG
1 AGTG
22130662 CAAACCCTGT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
20 35 0.90
21 4 0.10
ACGTcount: A:0.40, C:0.17, G:0.29, T:0.14
Consensus pattern (20 bp):
AGTGTGAATAGAGGCACCAA
Found at i:22135387 original size:22 final size:22
Alignment explanation
Indices: 22135362--22135408 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
22135352 GGAGCAACCG
*
22135362 CGAGAATTGGAGGAAACCACCA
1 CGAGAATTAGAGGAAACCACCA
*
22135384 CGAGAATTAGAGGAAGCCACCA
1 CGAGAATTAGAGGAAACCACCA
22135406 CGA
1 CGA
22135409 CCAGTCTTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.23, G:0.28, T:0.09
Consensus pattern (22 bp):
CGAGAATTAGAGGAAACCACCA
Found at i:22140812 original size:14 final size:14
Alignment explanation
Indices: 22140793--22140822 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
22140783 ACCTCGGAAG
22140793 AGATGTCCAATCTA
1 AGATGTCCAATCTA
22140807 AGATGTCCAATCTA
1 AGATGTCCAATCTA
22140821 AG
1 AG
22140823 CCAAAGTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.27
Consensus pattern (14 bp):
AGATGTCCAATCTA
Found at i:22142198 original size:7 final size:6
Alignment explanation
Indices: 22142175--22142228 Score: 54
Period size: 6 Copynumber: 8.5 Consensus size: 6
22142165 GCCTAAAAGA
* * *
22142175 AATTTT TATTTT TATTTT CAATTTT AATTTT AATTTTT AATTTT TATGTTT
1 AATTTT AATTTT AATTTT -AATTTT AATTTT AA-TTTT AATTTT AAT-TTT
22142226 AAT
1 AAT
22142229 AAGAGGGTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
6 25 0.61
7 16 0.39
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.69
Consensus pattern (6 bp):
AATTTT
Found at i:22142204 original size:13 final size:12
Alignment explanation
Indices: 22142175--22142228 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 12
22142165 GCCTAAAAGA
*
22142175 AATTTTTATTTT
1 AATTTTAATTTT
*
22142187 TATTTTCAATTTT
1 AATTTT-AATTTT
22142200 AATTTTAATTTTT
1 AATTTTAA-TTTT
*
22142213 AATTTTTATGTTT
1 AATTTTAAT-TTT
22142226 AAT
1 AAT
22142229 AAGAGGGTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
12 8 0.23
13 27 0.77
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.69
Consensus pattern (12 bp):
AATTTTAATTTT
Found at i:22144628 original size:10 final size:10
Alignment explanation
Indices: 22144613--22144639 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
22144603 TATTTTTCAT
22144613 TAGTCTTATA
1 TAGTCTTATA
22144623 TAGTCTTATA
1 TAGTCTTATA
22144633 TAGTCTT
1 TAGTCTT
22144640 TAGAATTGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.26, C:0.11, G:0.11, T:0.52
Consensus pattern (10 bp):
TAGTCTTATA
Found at i:22150144 original size:19 final size:19
Alignment explanation
Indices: 22150120--22150158 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
22150110 AAAATATTTT
*
22150120 TAATTAATTATAAAATGTA
1 TAATTAAATATAAAATGTA
*
22150139 TAATTAAATATAGAATGTA
1 TAATTAAATATAAAATGTA
22150158 T
1 T
22150159 TTATTTTGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (19 bp):
TAATTAAATATAAAATGTA
Found at i:22155345 original size:91 final size:91
Alignment explanation
Indices: 22155186--22155393 Score: 276
Period size: 91 Copynumber: 2.3 Consensus size: 91
22155176 TGGACACTCC
* * * * * *
22155186 AGTTTGTGGATGAACCACCAGTG-TCGCAGGTTAATACGTTGCTAGTAGGTTGTGAATGCACAAC
1 AGTTTGTGGATAAACCACCAGTGTTTGCAAGTTAATACGCTGCCAGTAGGTTATGAATGCACAAC
22155250 GGGTTTGCAGATAAAAGCTT-TCAGTA
66 GGGTTTGCAGATAAAA-CTTGTCAGTA
* * *
22155276 ATTTTGTGGATAAACCACCAGTGTTTGCAAGTTAATACGCTGCCAGTAGGTTATGAATGCATAAT
1 AGTTTGTGGATAAACCACCAGTGTTTGCAAGTTAATACGCTGCCAGTAGGTTATGAATGCACAAC
*
22155341 GGGTTTGCAGATAAAATTTGTCAGTA
66 GGGTTTGCAGATAAAACTTGTCAGTA
* * *
22155367 AGTGTATGGATAAACCACTAGTGTTTG
1 AGTTTGTGGATAAACCACCAGTGTTTG
22155394 TACTTAAACT
Statistics
Matches: 102, Mismatches: 14, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
90 23 0.23
91 79 0.77
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (91 bp):
AGTTTGTGGATAAACCACCAGTGTTTGCAAGTTAATACGCTGCCAGTAGGTTATGAATGCACAAC
GGGTTTGCAGATAAAACTTGTCAGTA
Found at i:22157369 original size:16 final size:16
Alignment explanation
Indices: 22157348--22157382 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
22157338 ATAAGGCTTC
22157348 ATAGGGTGCCATTTGT
1 ATAGGGTGCCATTTGT
22157364 ATAGGGTGCCATTTGT
1 ATAGGGTGCCATTTGT
22157380 ATA
1 ATA
22157383 CTTTATTAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.23, C:0.11, G:0.29, T:0.37
Consensus pattern (16 bp):
ATAGGGTGCCATTTGT
Found at i:22161251 original size:39 final size:37
Alignment explanation
Indices: 22161169--22161251 Score: 98
Period size: 39 Copynumber: 2.2 Consensus size: 37
22161159 AAATAATATT
22161169 TTAATAGATTTAATATTAAATTAAATTAAATACTTATC
1 TTAATAGATTT-ATATTAAATTAAATTAAATACTTATC
*
22161207 TTAATAGTATTT-TATTAATTTAATATTAAAATGA-TTATC
1 TTAATAG-ATTTATATTAAATTAA-ATT-AAAT-ACTTATC
22161246 TTAATA
1 TTAATA
22161252 TTAAATTTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
37 10 0.25
38 10 0.25
39 19 0.47
40 1 0.03
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.48
Consensus pattern (37 bp):
TTAATAGATTTATATTAAATTAAATTAAATACTTATC
Found at i:22163303 original size:91 final size:90
Alignment explanation
Indices: 22163134--22163345 Score: 264
Period size: 91 Copynumber: 2.4 Consensus size: 90
22163124 CAGACACTCC
* * * *
22163134 AATTTGTGGATGAACCACCAGTG-TTGCAGGTTAATACGTTGTCAGTAGGTTGTGAATGCACAAT
1 AATTTGTGGATAAACCACCAGTGTTTGCAGGTTAATACGCTGCCAGTAGGTTGTGAATGCACAAG
* * *
22163198 GGGTTTGTAGATAAAAGCTACCAGTA
66 GGGTCTGCAAATAAAAGCTACCAG-A
* * * *
22163224 AATTTTTGGATAAACCACTAGTGTTTGTAGGTTAATACGCTGCCAGTAGGTTGTGAATGCATAAG
1 AATTTGTGGATAAACCACCAGTGTTTGCAGGTTAATACGCTGCCAGTAGGTTGTGAATGCACAAG
* **
22163289 GGGTCTGCAAATAAAAGTTGTCAGA
66 GGGTCTGCAAATAAAAGCTACCAGA
**
22163314 AAGGTGTGGATAAACCACCAGTGTTTGCAGGT
1 AATTTGTGGATAAACCACCAGTGTTTGCAGGT
22163346 AAACTATCAG
Statistics
Matches: 102, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
90 48 0.47
91 54 0.53
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30
Consensus pattern (90 bp):
AATTTGTGGATAAACCACCAGTGTTTGCAGGTTAATACGCTGCCAGTAGGTTGTGAATGCACAAG
GGGTCTGCAAATAAAAGCTACCAGA
Found at i:22164455 original size:13 final size:13
Alignment explanation
Indices: 22164417--22164457 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
22164407 TTGCAAAGAT
*
22164417 AAATATGGAAAAG
1 AAATAGGGAAAAG
*
22164430 AAA-AGGGAGAAG
1 AAATAGGGAAAAG
22164442 AAATAGGGAAAAG
1 AAATAGGGAAAAG
22164455 AAA
1 AAA
22164458 GCAAAAATTC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 10 0.42
13 14 0.58
ACGTcount: A:0.63, C:0.00, G:0.29, T:0.07
Consensus pattern (13 bp):
AAATAGGGAAAAG
Found at i:22167166 original size:23 final size:22
Alignment explanation
Indices: 22167136--22167179 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
22167126 TACTGTTGGA
*
22167136 GGAGAATGCGCGCGACATGCGC
1 GGAGAATGCGCGCAACATGCGC
*
22167158 GGAGTAATGTGCGCAACATGCG
1 GGAG-AATGCGCGCAACATGCG
22167180 AGGCGACGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.25, C:0.23, G:0.39, T:0.14
Consensus pattern (22 bp):
GGAGAATGCGCGCAACATGCGC
Found at i:22168825 original size:19 final size:18
Alignment explanation
Indices: 22168801--22168846 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
22168791 ACGTCTCTTT
*
22168801 TTTGCATTCATTTCATGCA
1 TTTGCATTCATTACAT-CA
22168820 TTTGCATTTCATTACATCA
1 TTTGCA-TTCATTACATCA
*
22168839 TATGCATT
1 TTTGCATT
22168847 AAACACAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 2 0.08
19 13 0.54
20 9 0.38
ACGTcount: A:0.24, C:0.20, G:0.09, T:0.48
Consensus pattern (18 bp):
TTTGCATTCATTACATCA
Found at i:22171661 original size:44 final size:44
Alignment explanation
Indices: 22171579--22171662 Score: 114
Period size: 44 Copynumber: 1.9 Consensus size: 44
22171569 AGAAGGAACT
* * *
22171579 AAGGTGAAAACCCACAAAGGGCGCTTTAATTTCTAAAAAAGACC
1 AAGGTGAAAACCCACAAAGGGCGCTTTAAGTCCAAAAAAAGACC
* * *
22171623 AAGGTGAAAACTCGCAAAGGGCGCTTTGAGTCCAAAAAAA
1 AAGGTGAAAACCCACAAAGGGCGCTTTAAGTCCAAAAAAA
22171663 TAAAAATAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 34 1.00
ACGTcount: A:0.43, C:0.19, G:0.21, T:0.17
Consensus pattern (44 bp):
AAGGTGAAAACCCACAAAGGGCGCTTTAAGTCCAAAAAAAGACC
Found at i:22173151 original size:44 final size:44
Alignment explanation
Indices: 22173102--22173552 Score: 171
Period size: 44 Copynumber: 10.2 Consensus size: 44
22173092 GCCAGTAATT
22173102 TTATCTCCC-AGGGCAACAGTGGAATAGATTGAAGATTATAGATC
1 TTATCTCCCTA-GGCAACAGTGGAATAGATTGAAGATTATAGATC
* ** * ** * ** * *
22173146 TTATCTCCCTAAGCAGTAGTTGAGCAGATCGAAGATGGTGGATT
1 TTATCTCCCTAGGCAACAGTGGAATAGATTGAAGATTATAGATC
* ** * * * *
22173190 TTACCTCCCTGAGGTTACAGTGGAGTACATTGAAG-CTAGTAGTTC
1 TTATCTCCCT-AGGCAACAGTGGAATAGATTGAAGATTA-TAGATC
* *
22173235 -TATCTCCCTAGGCAACAGTGGAATAGATTGAATATTACAGATC
1 TTATCTCCCTAGGCAACAGTGGAATAGATTGAAGATTATAGATC
* * ** ** ** ** * *
22173278 TTATCTTCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATT
1 TTATCTCCCTAGGCAACAGTGGAATAGATTGAAGATTATAGATC
* ** * * **
22173322 TTACCTCCCTGAGGTTACAGTGGAGTACATTGAAG-CCAGTA-AT-
1 TTATCTCCCT-AGGCAACAGTGGAATAGATTGAAGATTA-TAGATC
* * * *
22173365 TCTATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACATATT
1 T-TATCTCCCTAGGCAACAGTGGAATAGATTGAAGATTATAGATC
* * * ** * ** **** *
22173410 TTATATCCTTAAGCAGTAGTGGAGTAGATCAAAGACGGCAGATT
1 TTATCTCCCTAGGCAACAGTGGAATAGATTGAAGATTATAGATC
* * ** * * **
22173454 TTACCTCTCTGAGGTTACAGTGGAGTACATTGAAG-CCAGTA-ATC
1 TTATCTCCCT-AGGCAACAGTGGAATAGATTGAAGATTA-TAGATC
* * *
22173498 CTATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATC
1 TTATCTCCCTAGGCAACAGTGGAATAGATTGAAGATTATAGATC
22173542 TTATCTCCCTA
1 TTATCTCCCTA
22173553 AGCAGTAGTG
Statistics
Matches: 276, Mismatches: 116, Indels: 30
0.65 0.27 0.07
Matches are distributed among these distances:
43 64 0.23
44 159 0.58
45 53 0.19
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (44 bp):
TTATCTCCCTAGGCAACAGTGGAATAGATTGAAGATTATAGATC
Found at i:22173239 original size:132 final size:132
Alignment explanation
Indices: 22173001--22173634 Score: 962
Period size: 132 Copynumber: 4.8 Consensus size: 132
22172991 AAGTAGATCA
* **
22173001 AAGATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTACCTCC
1 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCC
* * * * * *
22173066 TTGAAGTTATAGTGGAGTACATTAAAGCCAGTAATTTTATCTCCCAGGGCAACAGTGGAATAGAT
66 CTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAACAGTGGAATAGAT
22173131 TG
131 TG
* * * **
22173133 AAGATTATAGATCTTATCTCCCTAAGCAGTAGTTGAGCAGATCGAAGATGGTGGATTTTACCTCC
1 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCC
* * *
22173198 CTGAGGTTACAGTGGAGTACATTGAAGCTAGTAGTTCTATCTCCCTAGGCAACAGTGGAATAGAT
66 CTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAACAGTGGAATAGAT
22173263 TG
131 TG
* * **
22173265 AATATTACAGATCTTATCTTCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTACCTCC
1 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCC
22173330 CTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAACAGTGGAATAGAT
66 CTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAACAGTGGAATAGAT
22173395 TG
131 TG
* * * * * * *
22173397 AAGATTACATATTTTATATCCTTAAGCAGTAGTGGAGTAGATCAAAGACGGCAGATTTTACCTCT
1 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCC
*
22173462 CTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATCCTATCTCCCTGGGCAACAGTGGAATAGAT
66 CTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAACAGTGGAATAGAT
22173527 TG
131 TG
*
22173529 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCCGATTTTACCTCC
1 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCC
* * * *
22173594 CTGAGGTTGCAGCGGAGTATATTGGAGCCAGTAATTCTATC
66 CTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATC
22173635 ATATATTGGA
Statistics
Matches: 456, Mismatches: 46, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
132 456 1.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (132 bp):
AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCC
CTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAACAGTGGAATAGAT
TG
Found at i:22173400 original size:264 final size:264
Alignment explanation
Indices: 22173001--22174194 Score: 1641
Period size: 264 Copynumber: 4.4 Consensus size: 264
22172991 AAGTAGATCA
*
22173001 AAGATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTACCTCC
1 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTACCTCC
* * * * * *
22173066 TTGAAGTTATAGTGGAGTACATTAAAGCCAGTAATTTTATCTCCCAGGGCAACAGTGGAATAGAT
66 CTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAACAGTGGAATAGAT
* * * **
22173131 TGAAGATTATAGATCTTATCTCCCTAAGCAGTAGTTGAGCAGATCGAAGATGGTGGATTTTACCT
131 TGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCT
* * *
22173196 CCCTGAGGTTACAGTGGAGTACATTGAAGCTAGTAGTTCTATCTCCCTAGGCAACAGTGGAATAG
196 CCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAACAGTGGAATAG
22173261 ATTG
261 ATTG
* *
22173265 AATATTACAGATCTTATCTTCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTACCTCC
1 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTACCTCC
22173330 CTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAACAGTGGAATAGAT
66 CTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAACAGTGGAATAGAT
* * * * * *
22173395 TGAAGATTACATATTTTATATCCTTAAGCAGTAGTGGAGTAGATCAAAGACGGCAGATTTTACCT
131 TGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCT
* *
22173460 CTCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATCCTATCTCCCTGGGCAACAGTGGAATAG
196 CCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAACAGTGGAATAG
22173525 ATTG
261 ATTG
**
22173529 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCCGATTTTACCTCC
1 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTACCTCC
* * * * ***
22173594 CTGAGGTTGCAGCGGAGTATATTGGAGCCAGTAATTCTATCATATATTGGAGCCAGTAATTCTAT
66 CTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATC-T-CCCTGG-G-C---AA--C-A-
* * *
22173659 CTCTCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATTTCCCTAAGCAGTAGTGGAGC
120 ----GT-GG--A-A-TAG-A----TTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGC
*
22173724 AGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTATAGTGGAGTACATTGAAGCCAGTAATTCT
171 AGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
*
22173789 ATCTCTCTGGGCAACAGTGGAATAGATTG
236 ATCTCCCTGGGCAACAGTGGAATAGATTG
* * *
22173818 AAGATTACAAATCTTATCTCTCTAAGCAGTAGTGAAGCAGATCAAAGATGGTGGATTTTACCTCC
1 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTACCTCC
*
22173883 CTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCTCTGGGCAACAGTGGAATAGAT
66 CTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAACAGTGGAATAGAT
22173948 TGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCT
131 TGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCT
* * *
22174013 CTCTGAGGTTACAGTGGAGTACAGTAAAGCCAGTAATTCTATCTCCCTGGGCAACAGTGGAATAG
196 CCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAACAGTGGAATAG
22174078 ATTG
261 ATTG
* * **
22174082 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAAATCAAAGATGGCAGATTTTACCTCC
1 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTACCTCC
* * ** * ** *
22174147 TTGAGGTTGCAGCAGAGTATATTGGTGCCAGTAATTCTATTTCCCTGG
66 CTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGG
22174195 TTGGTAGTGG
Statistics
Matches: 821, Mismatches: 84, Indels: 50
0.86 0.09 0.05
Matches are distributed among these distances:
264 563 0.69
265 1 0.00
266 3 0.00
267 1 0.00
268 2 0.00
269 2 0.00
270 1 0.00
271 3 0.00
273 3 0.00
274 2 0.00
279 2 0.00
280 3 0.00
282 3 0.00
283 1 0.00
284 2 0.00
285 2 0.00
286 1 0.00
287 3 0.00
288 1 0.00
289 222 0.27
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (264 bp):
AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTACCTCC
CTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAACAGTGGAATAGAT
TGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCT
CCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAACAGTGGAATAG
ATTG
Found at i:22173644 original size:25 final size:25
Alignment explanation
Indices: 22173611--22173659 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
22173601 TGCAGCGGAG
22173611 TATATTGGAGCCAGTAATTCTATCA
1 TATATTGGAGCCAGTAATTCTATCA
22173636 TATATTGGAGCCAGTAATTCTATC
1 TATATTGGAGCCAGTAATTCTATC
22173660 TCTCTGGGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (25 bp):
TATATTGGAGCCAGTAATTCTATCA
Found at i:22173780 original size:157 final size:157
Alignment explanation
Indices: 22173482--22173791 Score: 530
Period size: 157 Copynumber: 2.0 Consensus size: 157
22173472 AGTGGAGTAC
22173482 ATTGAAGCCAGTAATCCTATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATC
1 ATTGAAGCCAGTAATCCTATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATC
* *
22173547 TCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCCGATTTTACCTCCCTGAGGTTGCAGCGGAGT
66 TCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGCGGAGT
* *
22173612 ATATTGGAGCCAGTAATTCTATCATAT
131 ACATTGAAGCCAGTAATTCTATCATAT
* * * *
22173639 ATTGGAGCCAGTAATTCTATCTCTCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATT
1 ATTGAAGCCAGTAATCCTATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATC
* *
22173704 TCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTATAGTGGAGT
66 TCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGCGGAGT
22173769 ACATTGAAGCCAGTAATTCTATC
131 ACATTGAAGCCAGTAATTCTATC
22173792 TCTCTGGGCA
Statistics
Matches: 143, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
157 143 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (157 bp):
ATTGAAGCCAGTAATCCTATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATC
TCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGCGGAGT
ACATTGAAGCCAGTAATTCTATCATAT
Found at i:22173952 original size:43 final size:44
Alignment explanation
Indices: 22173761--22173952 Score: 106
Period size: 43 Copynumber: 4.4 Consensus size: 44
22173751 CTGAGGTTAT
* *
22173761 AGTGGAGTACATTGAAGCCAGT-AATTCTATCTCTCTGGGCAAC
1 AGTGGAATAGATTGAAGCCAGTAAATTCTATCTCTCTGGGCAAC
* * ** **
22173804 AGTGGAATAGATTGAAG--ATTACAAATCTTATCTCTCTAAGCAGT
1 AGTGGAATAGATTGAAGCCAGTA-AATTC-TATCTCTCTGGGCAAC
* ** *** ** * * * **
22173848 AGT-GAAGCAGATCAAAGATGGTGGATTTTACCTCCCTGAGGTTAC
1 AGTGGAA-TAGATTGAAGCCAGTAAATTCTATCTCTCTG-GGCAAC
* *
22173893 AGTGGAGTACATTGAAGCCAGT-AATTCTATCTCTCTGGGCAAC
1 AGTGGAATAGATTGAAGCCAGTAAATTCTATCTCTCTGGGCAAC
22173936 AGTGGAATAGATTGAAG
1 AGTGGAATAGATTGAAG
22173953 ATTACAGATC
Statistics
Matches: 100, Mismatches: 41, Indels: 16
0.64 0.26 0.10
Matches are distributed among these distances:
41 2 0.02
43 41 0.41
44 40 0.40
45 14 0.14
46 3 0.03
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (44 bp):
AGTGGAATAGATTGAAGCCAGTAAATTCTATCTCTCTGGGCAAC
Found at i:22174103 original size:44 final size:44
Alignment explanation
Indices: 22173656--22174104 Score: 153
Period size: 44 Copynumber: 10.2 Consensus size: 44
22173646 CCAGTAATTC
*
22173656 TATCTCTCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCT
* ** ** ** ** ** *
22173700 TATTTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTT
1 TATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCT
* ** * * * * *
22173744 TACCTCCCTGAGGTTATAGTGGAGTACATTGAAGCCAGTA-A-TTC-
1 TATCTCCCTG-GGCAACAGTGGAATAGATTGAAG--ATTACAGATCT
* *
22173788 TATCTCTCTGGGCAACAGTGGAATAGATTGAAGATTACAAATCT
1 TATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCT
* ** ** * ** **** *
22173832 TATCTCTCTAAGCAGTAGT-GAAGCAGATCAAAGATGGTGGATTT
1 TATCTCCCTGGGCAACAGTGGAA-TAGATTGAAGATTACAGATCT
* ** * * * *
22173876 TACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA-A-TTC-
1 TATCTCCCTG-GGCAACAGTGGAATAGATTGAAG--ATTACAGATCT
*
22173920 TATCTCTCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCT
** ** ** ** ** *
22173964 TATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTT
1 TATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCT
* * ** * * * * * *
22174008 TACCTCTCTGAGGTTACAGTGGAGTACAGTAAAGCCAGTA-A-TTC-
1 TATCTCCCTG-GGCAACAGTGGAATAGATTGAAG--ATTACAGATCT
22174052 TATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCT
22174096 TATCTCCCT
1 TATCTCCCT
22174105 AAGCAGTAGT
Statistics
Matches: 268, Mismatches: 117, Indels: 40
0.63 0.28 0.09
Matches are distributed among these distances:
41 9 0.03
42 3 0.01
43 63 0.24
44 144 0.54
45 42 0.16
46 4 0.01
47 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCT
Found at i:22174141 original size:553 final size:553
Alignment explanation
Indices: 22173091--22174186 Score: 1879
Period size: 553 Copynumber: 2.0 Consensus size: 553
22173081 AGTACATTAA
* *
22173091 AGCCAGTAATTTTATCTCCCAGGGCAACAGTGGAATAGATTGAAGATTATAGATCTTATCTCCCT
1 AGCCAGTAATTCTATCTCCCAGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCT
* * **
22173156 AAGCAGTAGTTGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATT
66 AAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATT
* * * *
22173221 GAAGCTAGTAGTTCTATCTCCCTAGGCAACAGTGGAATAGATTGAATATTACAGATCTTATCTTC
131 GAAGCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGATTACAAATCTTATCTTC
*
22173286 CTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTACCTCCCTGAGGTTACAGTGGAGTACA
196 CTAAGCAGTAGTGAAGCAGATCAAAGATGGTGGATTTTACCTCCCTGAGGTTACAGTGGAGTACA
* *
22173351 TTGAAGCCAGTAATTCTATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACATATTTTATAT
261 TTGAAGCCAGTAATTCTATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATAT
* *
22173416 CCTTAAGCAGTAGTGGAGTAGATCAAAGACGGCAGATTTTACCTCTCTGAGGTTACAGTGGAGTA
326 CCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAGATTTTACCTCTCTGAGGTTACAGTGGAGTA
* *
22173481 CATTGAAGCCAGTAATCCTATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTAT
391 CAGTAAAGCCAGTAATCCTATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTAT
* * * *
22173546 CTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCCGATTTTACCTCCCTGAGGTTGCAGCGGAG
456 CTCCCTAAGCAGTAGTAGAGCAAATCAAAGATGGCAGATTTTACCTCCCTGAGGTTGCAGCAGAG
22173611 TATATTGGAGCCAGTAATTCTATCATATATTGG
521 TATATTGGAGCCAGTAATTCTATCATATATTGG
* * *
22173644 AGCCAGTAATTCTATCTCTCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATTTCCCT
1 AGCCAGTAATTCTATCTCCCAGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCT
*
22173709 AAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTATAGTGGAGTACATT
66 AAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATT
* *
22173774 GAAGCCAGTAATTCTATCTCTCTGGGCAACAGTGGAATAGATTGAAGATTACAAATCTTATC-TC
131 GAAGCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGATTACAAATCTTATCTTC
22173838 TCTAAGCAGTAGTGAAGCAGATCAAAGATGGTGGATTTTACCTCCCTGAGGTTACAGTGGAGTAC
196 -CTAAGCAGTAGTGAAGCAGATCAAAGATGGTGGATTTTACCTCCCTGAGGTTACAGTGGAGTAC
* *
22173903 ATTGAAGCCAGTAATTCTATCTCTCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATC
260 ATTGAAGCCAGTAATTCTATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATA
*
22173968 TCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCTCTGAGGTTACAGTGGAGT
325 TCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAGATTTTACCTCTCTGAGGTTACAGTGGAGT
*
22174033 ACAGTAAAGCCAGTAATTCTATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTA
390 ACAGTAAAGCCAGTAATCCTATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTA
*
22174098 TCTCCCTAAGCAGTAGTAGAGCAAATCAAAGATGGCAGATTTTACCTCCTTGAGGTTGCAGCAGA
455 TCTCCCTAAGCAGTAGTAGAGCAAATCAAAGATGGCAGATTTTACCTCCCTGAGGTTGCAGCAGA
*
22174163 GTATATTGGTGCCAGTAATTCTAT
520 GTATATTGGAGCCAGTAATTCTAT
22174187 TTCCCTGGTT
Statistics
Matches: 509, Mismatches: 33, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
552 2 0.00
553 507 1.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (553 bp):
AGCCAGTAATTCTATCTCCCAGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCT
AAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATT
GAAGCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGATTACAAATCTTATCTTC
CTAAGCAGTAGTGAAGCAGATCAAAGATGGTGGATTTTACCTCCCTGAGGTTACAGTGGAGTACA
TTGAAGCCAGTAATTCTATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATAT
CCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAGATTTTACCTCTCTGAGGTTACAGTGGAGTA
CAGTAAAGCCAGTAATCCTATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTAT
CTCCCTAAGCAGTAGTAGAGCAAATCAAAGATGGCAGATTTTACCTCCCTGAGGTTGCAGCAGAG
TATATTGGAGCCAGTAATTCTATCATATATTGG
Found at i:22174217 original size:132 final size:132
Alignment explanation
Indices: 22173639--22174186 Score: 907
Period size: 132 Copynumber: 4.2 Consensus size: 132
22173629 TCTATCATAT
* *
22173639 ATTGGAGCCAGTAATTCTATCTCTCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATT
1 ATTGAAGCCAGTAATTCTATCTCTCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATC
*
22173704 TCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTATAGTGGAGT
66 TCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGT
22173769 AC
131 AC
*
22173771 ATTGAAGCCAGTAATTCTATCTCTCTGGGCAACAGTGGAATAGATTGAAGATTACAAATCTTATC
1 ATTGAAGCCAGTAATTCTATCTCTCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATC
* * **
22173836 TCTCTAAGCAGTAGTGAAGCAGATCAAAGATGGTGGATTTTACCTCCCTGAGGTTACAGTGGAGT
66 TCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGT
22173901 AC
131 AC
22173903 ATTGAAGCCAGTAATTCTATCTCTCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATC
1 ATTGAAGCCAGTAATTCTATCTCTCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATC
*
22173968 TCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCTCTGAGGTTACAGTGGAGT
66 TCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGT
22174033 AC
131 AC
* * *
22174035 AGTAAAGCCAGTAATTCTATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATC
1 ATTGAAGCCAGTAATTCTATCTCTCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATC
* * * * **
22174100 TCCCTAAGCAGTAGTAGAGCAAATCAAAGATGGCAGATTTTACCTCCTTGAGGTTGCAGCAGAGT
66 TCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGT
*
22174165 AT
131 AC
**
22174167 ATTGGTGCCAGTAATTCTAT
1 ATTGAAGCCAGTAATTCTAT
22174187 TTCCCTGGTT
Statistics
Matches: 387, Mismatches: 29, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 387 1.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (132 bp):
ATTGAAGCCAGTAATTCTATCTCTCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATC
TCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGT
AC
Found at i:22175824 original size:3 final size:3
Alignment explanation
Indices: 22175818--22175886 Score: 59
Period size: 3 Copynumber: 22.0 Consensus size: 3
22175808 ATTTTTTTAC
* * *
22175818 ATT ATT ATT A-T ATT TTT ATT ATT ACTT GTTT ATT ATT CTT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT A-TT -ATT ATT ATT ATT ATT ATT
*
22175864 ATA ATTT ATT ATT ATTT ATT ATT
1 ATT A-TT ATT ATT A-TT ATT ATT
22175887 TTCATGTACA
Statistics
Matches: 53, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
2 2 0.04
3 42 0.79
4 9 0.17
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:22175859 original size:23 final size:22
Alignment explanation
Indices: 22175828--22175886 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 22
22175818 ATTATTATTA
**
22175828 TATTTTTATTATTACTTGTTTAT
1 TATTTTTATTATTA-TAATTTAT
*
22175851 TATTCTTATTATTATAATTTAT
1 TATTTTTATTATTATAATTTAT
22175873 TATTATTTATTATT
1 TATT-TTTATTATT
22175887 TTCATGTACA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 10 0.32
23 21 0.68
ACGTcount: A:0.27, C:0.03, G:0.02, T:0.68
Consensus pattern (22 bp):
TATTTTTATTATTATAATTTAT
Found at i:22177386 original size:24 final size:24
Alignment explanation
Indices: 22177354--22177403 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
22177344 CACTTACTCA
*
22177354 ATCAAAATCTTACATATAGTAAAG
1 ATCAAAATCTTAAATATAGTAAAG
*
22177378 ATCAAAATCTTAAATATAGTATAG
1 ATCAAAATCTTAAATATAGTAAAG
22177402 AT
1 AT
22177404 AATTCTAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.10, G:0.08, T:0.32
Consensus pattern (24 bp):
ATCAAAATCTTAAATATAGTAAAG
Found at i:22177686 original size:11 final size:11
Alignment explanation
Indices: 22177672--22177697 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
22177662 AAAGTATAGT
22177672 AAAATATTTTA
1 AAAATATTTTA
22177683 AAAATATTTTA
1 AAAATATTTTA
22177694 AAAA
1 AAAA
22177698 AACACATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
AAAATATTTTA
Found at i:22178260 original size:29 final size:29
Alignment explanation
Indices: 22178208--22178263 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
22178198 ATAAAGAGAA
* * *
22178208 AATCAAATTAGTACTTCTATTATTAAATG
1 AATCAAATTAGTACCTATAATATTAAATG
*
22178237 AATCAATTTAGTACCTATAATATTAAA
1 AATCAAATTAGTACCTATAATATTAAA
22178264 AAACAAATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.45, C:0.11, G:0.05, T:0.39
Consensus pattern (29 bp):
AATCAAATTAGTACCTATAATATTAAATG
Found at i:22180087 original size:16 final size:16
Alignment explanation
Indices: 22180066--22180096 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
22180056 ATACAGGTAC
22180066 TGAGAATTCTAAGTAT
1 TGAGAATTCTAAGTAT
22180082 TGAGAATTCTAAGTA
1 TGAGAATTCTAAGTA
22180097 AATTTGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.06, G:0.19, T:0.35
Consensus pattern (16 bp):
TGAGAATTCTAAGTAT
Found at i:22180986 original size:243 final size:243
Alignment explanation
Indices: 22180558--22181545 Score: 1850
Period size: 243 Copynumber: 4.1 Consensus size: 243
22180548 CATTTTTACT
* *
22180558 CTGATCTGTTAGTATTATTTGGGAAATGGCAATGATGAGCTGTTTTATTTGGTTGATGGTAGGTA
1 CTGATCTGTTAGTATTATTTGGGAAATGGCAGTGATGAGCTGTTATATTTGGTTGATGGTAGGTA
* *
22180623 AATACATATGTGCCTATGTCATGAATTTTGGTAATTTTGGCATGATTTATAGCATATGGAATTGG
66 AATACATACGTGCCTATGTCATGAATTTTGGTAATTTTGGCATCATTTATAGCATATGGAATTGG
22180688 CATGTGGACTGATTGGCTAAATTACATGATGAGTAATGATTAATGTTAGTCAAGTGAGCAATGTA
131 CATGTGGACTGATTGGCTAAATTACATGATGAGTAATGATTAATGTTAGTCAAGTGAGCAATGTA
*
22180753 TGATTAATGTATGAATTGGCATATGTGCCTTTCTCTGGTTAGCACTTA
196 TGATTAATGTAAGAATTGGCATATGTGCCTTTCTCTGGTTAGCACTTA
*
22180801 CTGATCTGTTAGTATTATTTGGGAAATGGCAGTGATGAGCTGTTTTATTTGGTTGATGGTAGGTA
1 CTGATCTGTTAGTATTATTTGGGAAATGGCAGTGATGAGCTGTTATATTTGGTTGATGGTAGGTA
*
22180866 AATACATACGTGCCTATGTCATGAATTTTGGTAATTTTGGCATGATTTATAGCATATGGAATTGG
66 AATACATACGTGCCTATGTCATGAATTTTGGTAATTTTGGCATCATTTATAGCATATGGAATTGG
22180931 CATGTGGACTGATTGGCTAAATTACATGATGAGTAATGATTAATGTTAGTCAAGTGAGCAATGTA
131 CATGTGGACTGATTGGCTAAATTACATGATGAGTAATGATTAATGTTAGTCAAGTGAGCAATGTA
22180996 TGATTAATGTAAGAATTGGCATATGTGCCTTTCTCTGGTTAGCACTTA
196 TGATTAATGTAAGAATTGGCATATGTGCCTTTCTCTGGTTAGCACTTA
* *
22181044 TTGATCTATTAGTATTATTTGGGAAATGGCAGTGATGAGCTGTTATATTTGGTTGATGGTAGGTA
1 CTGATCTGTTAGTATTATTTGGGAAATGGCAGTGATGAGCTGTTATATTTGGTTGATGGTAGGTA
22181109 AATACATACGTGCCTATGTCATGAATTTTGGTAATTTTGGCATCATTTATAGCATATGGAATTGG
66 AATACATACGTGCCTATGTCATGAATTTTGGTAATTTTGGCATCATTTATAGCATATGGAATTGG
22181174 CATGTGGACTGATTGGCTAAATTACATGATGAGTAATGATTAATGTTAGTCAAGTGAGCAATGTA
131 CATGTGGACTGATTGGCTAAATTACATGATGAGTAATGATTAATGTTAGTCAAGTGAGCAATGTA
22181239 TGATTAATGTAAGAATTGGCATATGTGCCTTTCTCTGGTTAGCACTTA
196 TGATTAATGTAAGAATTGGCATATGTGCCTTTCTCTGGTTAGCACTTA
* *
22181287 TTGATCTATTAGTATTATTTGGGAAATGGCAGTGATGAGCTGTTATATTTGGTTGATGGTAGGTA
1 CTGATCTGTTAGTATTATTTGGGAAATGGCAGTGATGAGCTGTTATATTTGGTTGATGGTAGGTA
22181352 AATACATACGTGCCTATGTCATGAATTTTGGTAATTTTGGCATCATTTATAGCATATGGAATTGG
66 AATACATACGTGCCTATGTCATGAATTTTGGTAATTTTGGCATCATTTATAGCATATGGAATTGG
22181417 CATGTGGACTGATTGGCTAAATTACATGATGAGTAATGATTAATGTTAGTCAAGTGAGCAATGTA
131 CATGTGGACTGATTGGCTAAATTACATGATGAGTAATGATTAATGTTAGTCAAGTGAGCAATGTA
* *
22181482 TGATTAATGTATGAATTGGCATATGTGCCTTTCTCTAGTTAGCACTTA
196 TGATTAATGTAAGAATTGGCATATGTGCCTTTCTCTGGTTAGCACTTA
*
22181530 CTGATATGTTAGTATT
1 CTGATCTGTTAGTATT
22181546 TGTTAGTAAT
Statistics
Matches: 733, Mismatches: 12, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
243 733 1.00
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.38
Consensus pattern (243 bp):
CTGATCTGTTAGTATTATTTGGGAAATGGCAGTGATGAGCTGTTATATTTGGTTGATGGTAGGTA
AATACATACGTGCCTATGTCATGAATTTTGGTAATTTTGGCATCATTTATAGCATATGGAATTGG
CATGTGGACTGATTGGCTAAATTACATGATGAGTAATGATTAATGTTAGTCAAGTGAGCAATGTA
TGATTAATGTAAGAATTGGCATATGTGCCTTTCTCTGGTTAGCACTTA
Found at i:22182485 original size:10 final size:10
Alignment explanation
Indices: 22182470--22182502 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
22182460 AAAAACAATT
22182470 TATTAATATA
1 TATTAATATA
22182480 TATTAATATA
1 TATTAATATA
*
22182490 TATTAATAAA
1 TATTAATATA
22182500 TAT
1 TAT
22182503 ATATGTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (10 bp):
TATTAATATA
Found at i:22184084 original size:35 final size:36
Alignment explanation
Indices: 22184036--22184104 Score: 122
Period size: 35 Copynumber: 1.9 Consensus size: 36
22184026 ATTTTTTAGA
22184036 TATTGATTATGTTTTAAGCTTGTTGGATATTGAATT
1 TATTGATTATGTTTTAAGCTTGTTGGATATTGAATT
*
22184072 TATT-ATTATGTTTTTAGCTTGTTGGATATTGAA
1 TATTGATTATGTTTTAAGCTTGTTGGATATTGAA
22184105 ATGATTGACA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 28 0.88
36 4 0.12
ACGTcount: A:0.25, C:0.03, G:0.19, T:0.54
Consensus pattern (36 bp):
TATTGATTATGTTTTAAGCTTGTTGGATATTGAATT
Found at i:22185509 original size:249 final size:249
Alignment explanation
Indices: 22185071--22185568 Score: 996
Period size: 249 Copynumber: 2.0 Consensus size: 249
22185061 GGTGTAATAT
22185071 TATGCACTTGGACAATGTTGTTACTATGTGGTGTACTATTAATTATGTATTTGGGTAAATTATTA
1 TATGCACTTGGACAATGTTGTTACTATGTGGTGTACTATTAATTATGTATTTGGGTAAATTATTA
22185136 ATTTCTAGTATTCATTGTGGTTTCGAAGCTAATTTATAATTATTCAATCCTTGTTTTTTTATTTT
66 ATTTCTAGTATTCATTGTGGTTTCGAAGCTAATTTATAATTATTCAATCCTTGTTTTTTTATTTT
22185201 TTTAACACAATTACAAATAATTTATTTGATATTAGTTGTTTTCAATTTATGACGGTTAATATGGT
131 TTTAACACAATTACAAATAATTTATTTGATATTAGTTGTTTTCAATTTATGACGGTTAATATGGT
22185266 AGCTTAATAATTGATTATTATTATAAATAAATCATTGCAATATATGTAAAATCA
196 AGCTTAATAATTGATTATTATTATAAATAAATCATTGCAATATATGTAAAATCA
22185320 TATGCACTTGGACAATGTTGTTACTATGTGGTGTACTATTAATTATGTATTTGGGTAAATTATTA
1 TATGCACTTGGACAATGTTGTTACTATGTGGTGTACTATTAATTATGTATTTGGGTAAATTATTA
22185385 ATTTCTAGTATTCATTGTGGTTTCGAAGCTAATTTATAATTATTCAATCCTTGTTTTTTTATTTT
66 ATTTCTAGTATTCATTGTGGTTTCGAAGCTAATTTATAATTATTCAATCCTTGTTTTTTTATTTT
22185450 TTTAACACAATTACAAATAATTTATTTGATATTAGTTGTTTTCAATTTATGACGGTTAATATGGT
131 TTTAACACAATTACAAATAATTTATTTGATATTAGTTGTTTTCAATTTATGACGGTTAATATGGT
22185515 AGCTTAATAATTGATTATTATTATAAATAAATCATTGCAATATATGTAAAATCA
196 AGCTTAATAATTGATTATTATTATAAATAAATCATTGCAATATATGTAAAATCA
22185569 ATTTAAAATA
Statistics
Matches: 249, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
249 249 1.00
ACGTcount: A:0.32, C:0.08, G:0.13, T:0.47
Consensus pattern (249 bp):
TATGCACTTGGACAATGTTGTTACTATGTGGTGTACTATTAATTATGTATTTGGGTAAATTATTA
ATTTCTAGTATTCATTGTGGTTTCGAAGCTAATTTATAATTATTCAATCCTTGTTTTTTTATTTT
TTTAACACAATTACAAATAATTTATTTGATATTAGTTGTTTTCAATTTATGACGGTTAATATGGT
AGCTTAATAATTGATTATTATTATAAATAAATCATTGCAATATATGTAAAATCA
Found at i:22185750 original size:34 final size:35
Alignment explanation
Indices: 22185692--22185758 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
22185682 CAAACACTAG
*
22185692 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCAAGTAAATCATTTTACAGAAAAGT
*
22185727 AAAATATTTTCAAG-AAATCATTTTACGGAAAA
1 AAAATATTTTCAAGTAAATCATTTTACAGAAAA
22185759 CATTTTACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.48, C:0.10, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAATATTTTCAAGTAAATCATTTTACAGAAAAGT
Found at i:22188081 original size:14 final size:14
Alignment explanation
Indices: 22188062--22188088 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
22188052 ATTAGTTAAA
22188062 CATTAGATAATCAT
1 CATTAGATAATCAT
22188076 CATTAGATAATCA
1 CATTAGATAATCA
22188089 GTAAACCAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.15, G:0.07, T:0.33
Consensus pattern (14 bp):
CATTAGATAATCAT
Found at i:22194204 original size:3 final size:3
Alignment explanation
Indices: 22194196--22194252 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
22194186 CTATCAATCA
22194196 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
22194244 ATC ATC ATC
1 ATC ATC ATC
22194253 TTCTTCTTCT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
ATC
Found at i:22194257 original size:3 final size:3
Alignment explanation
Indices: 22194251--22194330 Score: 160
Period size: 3 Copynumber: 26.7 Consensus size: 3
22194241 ATCATCATCA
22194251 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
22194299 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
22194331 AATCTATCAT
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 77 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:22194629 original size:23 final size:22
Alignment explanation
Indices: 22194603--22194650 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
22194593 AGGCTAAGCT
*
22194603 TAAAATAAATTTAATATAAT-ATG
1 TAAAATAAA-CTAA-ATAATCATG
22194626 TAAAATAAACTAAATAATCATG
1 TAAAATAAACTAAATAATCATG
22194648 TAA
1 TAA
22194651 TCAATGAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 5 0.22
22 9 0.39
23 9 0.39
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (22 bp):
TAAAATAAACTAAATAATCATG
Found at i:22197713 original size:20 final size:20
Alignment explanation
Indices: 22197688--22197725 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
22197678 TGAAAGTACA
22197688 AATAAATTCCTAGAAATACG
1 AATAAATTCCTAGAAATACG
22197708 AATAAATTCCTAGAAATA
1 AATAAATTCCTAGAAATA
22197726 AATGTATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.53, C:0.13, G:0.08, T:0.26
Consensus pattern (20 bp):
AATAAATTCCTAGAAATACG
Found at i:22198888 original size:8 final size:8
Alignment explanation
Indices: 22198875--22198906 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
22198865 TGGGGCCTAA
22198875 TTAATTTT
1 TTAATTTT
22198883 TTAATTTT
1 TTAATTTT
22198891 TTAATTTT
1 TTAATTTT
22198899 TTAATTTT
1 TTAATTTT
22198907 ACTTTTAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (8 bp):
TTAATTTT
Found at i:22201854 original size:12 final size:12
Alignment explanation
Indices: 22201837--22201862 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
22201827 TATTTAACTA
22201837 ATAATTGTATTT
1 ATAATTGTATTT
22201849 ATAATTGTATTT
1 ATAATTGTATTT
22201861 AT
1 AT
22201863 CTTTTCCCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (12 bp):
ATAATTGTATTT
Found at i:22210324 original size:37 final size:37
Alignment explanation
Indices: 22210275--22210347 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
22210265 TATTTTAACT
* *
22210275 TTTTAGGCTACACATGTAAGAAAATAATTGATACACC
1 TTTTAGACTACACATGTAAAAAAATAATTGATACACC
22210312 TTTTAGACTACACATGTAAAAAAATAATTGATACAC
1 TTTTAGACTACACATGTAAAAAAATAATTGATACAC
22210348 ATTCTTTACT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.44, C:0.15, G:0.11, T:0.30
Consensus pattern (37 bp):
TTTTAGACTACACATGTAAAAAAATAATTGATACACC
Found at i:22215462 original size:13 final size:13
Alignment explanation
Indices: 22215444--22215468 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22215434 AACCAAATTT
22215444 TCAAAAGCACTTC
1 TCAAAAGCACTTC
22215457 TCAAAAGCACTT
1 TCAAAAGCACTT
22215469 TTCCACGGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.28, G:0.08, T:0.24
Consensus pattern (13 bp):
TCAAAAGCACTTC
Found at i:22216490 original size:3 final size:3
Alignment explanation
Indices: 22216482--22216513 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
22216472 GCCAACGTCA
*
22216482 AAG AAG AAG AAG AAG AAG AAA AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
22216514 AATGATGATG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:22217685 original size:13 final size:13
Alignment explanation
Indices: 22217667--22217692 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22217657 TAGAAATCGT
22217667 GTCTCGAGACCAA
1 GTCTCGAGACCAA
22217680 GTCTCGAGACCAA
1 GTCTCGAGACCAA
22217693 CCTCCCTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.31, G:0.23, T:0.15
Consensus pattern (13 bp):
GTCTCGAGACCAA
Found at i:22218412 original size:14 final size:13
Alignment explanation
Indices: 22218379--22218412 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
22218369 GCTATCATAA
22218379 ATTAAATTAGAAC
1 ATTAAATTAGAAC
22218392 ATATAAATATAGAAC
1 AT-TAAAT-TAGAAC
22218407 ATTAAA
1 ATTAAA
22218413 GCATAACTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 2 0.11
14 9 0.47
15 8 0.42
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.29
Consensus pattern (13 bp):
ATTAAATTAGAAC
Found at i:22234683 original size:29 final size:29
Alignment explanation
Indices: 22234633--22234689 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
22234623 AACCCCGTGA
* *
22234633 CAAGTGGTATCAGAGCTGTTGGTTCGAAC
1 CAAGTGATATCAGAGCTATTGGTTCGAAC
* *
22234662 CAAGTGATATCTGAGTTATTGGTTCGAA
1 CAAGTGATATCAGAGCTATTGGTTCGAA
22234690 GGCACCATTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (29 bp):
CAAGTGATATCAGAGCTATTGGTTCGAAC
Found at i:22247216 original size:25 final size:25
Alignment explanation
Indices: 22247188--22247288 Score: 89
Period size: 25 Copynumber: 4.0 Consensus size: 25
22247178 AGCGTCCCAA
* *
22247188 TATTTGGCTCTTACGAGCTTCCCGT
1 TATTTGGCTCTCATGAGCTTCCCGT
*
22247213 TATTTAGCTCTCATGAGCTTCCCGAT
1 TATTTGGCTCTCATGAGCTTCCCG-T
* ** *
22247239 TA-ATGG-TACTTTTGAGCTTCCCGA
1 TATTTGGCT-CTCATGAGCTTCCCGT
* *
22247263 TATTTGGCTCACAAGAGCTTCCCGT
1 TATTTGGCTCTCATGAGCTTCCCGT
22247288 T
1 T
22247289 TACATGTTTG
Statistics
Matches: 58, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
24 3 0.05
25 51 0.88
26 4 0.07
ACGTcount: A:0.18, C:0.26, G:0.19, T:0.38
Consensus pattern (25 bp):
TATTTGGCTCTCATGAGCTTCCCGT
Found at i:22255301 original size:18 final size:18
Alignment explanation
Indices: 22255278--22255313 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
22255268 CTAATTATAT
22255278 TATTGAATTATTTA-ATTA
1 TATTGAA-TATTTATATTA
22255296 TATTGAATATTTATATTA
1 TATTGAATATTTATATTA
22255314 AAATTAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.56
Consensus pattern (18 bp):
TATTGAATATTTATATTA
Found at i:22256039 original size:22 final size:22
Alignment explanation
Indices: 22256011--22256059 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
22256001 TTTTAAAAAG
*
22256011 TATTTTTAAATTAAT-AGAACAA
1 TATTTTTAAAATAATGA-AACAA
*
22256033 TATTTTTAAAATAGTGAAACAA
1 TATTTTTAAAATAATGAAACAA
22256055 TATTT
1 TATTT
22256060 AAATAATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 23 0.96
23 1 0.04
ACGTcount: A:0.47, C:0.04, G:0.06, T:0.43
Consensus pattern (22 bp):
TATTTTTAAAATAATGAAACAA
Found at i:22263761 original size:9 final size:9
Alignment explanation
Indices: 22263747--22263771 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
22263737 TTAGATGATT
22263747 AATATGTAA
1 AATATGTAA
22263756 AATATGTAA
1 AATATGTAA
22263765 AATATGT
1 AATATGT
22263772 CATAAGAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (9 bp):
AATATGTAA
Found at i:22267887 original size:20 final size:21
Alignment explanation
Indices: 22267850--22267904 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
22267840 CAGGGGGTTT
* *
22267850 ACACGCCCATGTCAA-GGGAC
1 ACACGCCCGTGTGAAGGGGAC
*
22267870 ACACGCCCGTGTGGAGGGGAC
1 ACACGCCCGTGTGAAGGGGAC
*
22267891 ACATGCCCGTGTGA
1 ACACGCCCGTGTGA
22267905 GCAGCCTGTG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 12 0.41
21 17 0.59
ACGTcount: A:0.24, C:0.31, G:0.33, T:0.13
Consensus pattern (21 bp):
ACACGCCCGTGTGAAGGGGAC
Found at i:22281904 original size:44 final size:44
Alignment explanation
Indices: 22281841--22281971 Score: 217
Period size: 44 Copynumber: 3.0 Consensus size: 44
22281831 CTATTTTTAA
*
22281841 TTTCCCACTTAAAATCTGATTAGTGTAGGTTATTTTAATATTAG
1 TTTCCCACTTAAACTCTGATTAGTGTAGGTTATTTTAATATTAG
22281885 TTTCCCACTTAAACTCTGATTAGTGTAGGTTATTTTAATATTAG
1 TTTCCCACTTAAACTCTGATTAGTGTAGGTTATTTTAATATTAG
* * * *
22281929 TTTCCCACTTAAACTTTGATTAATATAGGATATTTTAATATTA
1 TTTCCCACTTAAACTCTGATTAGTGTAGGTTATTTTAATATTA
22281972 TTTGACCTAC
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 82 1.00
ACGTcount: A:0.31, C:0.12, G:0.11, T:0.46
Consensus pattern (44 bp):
TTTCCCACTTAAACTCTGATTAGTGTAGGTTATTTTAATATTAG
Found at i:22283897 original size:44 final size:44
Alignment explanation
Indices: 22283847--22283937 Score: 137
Period size: 44 Copynumber: 2.1 Consensus size: 44
22283837 AACTCAGTTT
* *
22283847 TTAGTTTATCAGTTAAACTTTGATTAGTGTAGGTTATTTTAATA
1 TTAGTTTACCACTTAAACTTTGATTAGTGTAGGTTATTTTAATA
* * *
22283891 TTAGTTTCCCACTTAAATTTTGATTAGTGTAGGTTATTTTGATA
1 TTAGTTTACCACTTAAACTTTGATTAGTGTAGGTTATTTTAATA
22283935 TTA
1 TTA
22283938 TTTGACCTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.27, C:0.07, G:0.15, T:0.51
Consensus pattern (44 bp):
TTAGTTTACCACTTAAACTTTGATTAGTGTAGGTTATTTTAATA
Found at i:22285153 original size:125 final size:126
Alignment explanation
Indices: 22284969--22285219 Score: 321
Period size: 127 Copynumber: 2.0 Consensus size: 126
22284959 AGAAGAAAGC
* **
22284969 GTAAGTACTTTCTTTTCTTCATTGATTTAACCTTCAATTACGGTTTGGGGTATTTTAGAAAGAGA
1 GTAAGTACTTTCTTTTCTTCATTGATTTAACCTTCAATCACGGTTTGGGGTATCCTAGAAAGAGA
* *
22285034 TTTATTAGTTT-AAATTTTGATTCTGTTGTTGGATACTCTTT-GATGCTGATCCATTTGCGT
66 TTTATTAATTTAAAATGTTGATTCTGTTGTTGGATACTCTTTAGA-GCTGATCCATTTGCGT
* * * * *
22285094 GTAAGTACTTTTTGTTTCATT-GTTGATTTAAGCTTTAATCGCGGTTT-GGGTATCCTAGAAAGA
1 GTAAGTACTTTCT-TTTC-TTCATTGATTTAACCTTCAATCACGGTTTGGGGTATCCTAGAAAGA
* **
22285157 GATTTATTAATTTAAAAATGTTGATTTTGTTGTTGGATTGTCTTTAGAGCTGATCCATTTGCG
64 GATTTATTAATTT-AAAATGTTGATTCTGTTGTTGGATACTCTTTAGAGCTGATCCATTTGCG
22285220 AAGAAGGATT
Statistics
Matches: 108, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
125 38 0.35
126 25 0.23
127 43 0.40
128 2 0.02
ACGTcount: A:0.23, C:0.11, G:0.20, T:0.46
Consensus pattern (126 bp):
GTAAGTACTTTCTTTTCTTCATTGATTTAACCTTCAATCACGGTTTGGGGTATCCTAGAAAGAGA
TTTATTAATTTAAAATGTTGATTCTGTTGTTGGATACTCTTTAGAGCTGATCCATTTGCGT
Found at i:22290378 original size:28 final size:28
Alignment explanation
Indices: 22290346--22290405 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
22290336 AACTGGACTC
22290346 TATTAGTAAATTAGCCTTAAACAAAATT
1 TATTAGTAAATTAGCCTTAAACAAAATT
22290374 TATTAGTAAATTAGCCTTAAACAAAATT
1 TATTAGTAAATTAGCCTTAAACAAAATT
22290402 TATT
1 TATT
22290406 TTCAAAATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.38
Consensus pattern (28 bp):
TATTAGTAAATTAGCCTTAAACAAAATT
Found at i:22295362 original size:9 final size:9
Alignment explanation
Indices: 22295348--22295373 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
22295338 CTTCATGTAA
22295348 ATAATAATT
1 ATAATAATT
22295357 ATAATAATT
1 ATAATAATT
22295366 ATAATAAT
1 ATAATAAT
22295374 AAGATGATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
ATAATAATT
Found at i:22300575 original size:63 final size:62
Alignment explanation
Indices: 22300476--22300621 Score: 161
Period size: 63 Copynumber: 2.3 Consensus size: 62
22300466 TATGTGGTAG
* * ** *
22300476 GCTGTGTAACTCACTATTTTGGAATTAGAGGCACACGAGTTAGAGACATA-GGTGTGTGTTCAA
1 GCTGTGTAACTCACTGTTTTAGAATTAGAGGCACACGAGCCAGAGACA-AGGGCGTGTG-TCAA
* *
22300539 GCTGTGTAACTCACTGTTTTAGAATTAG-GGATACACGAGCCAGAGACAAGGGCGTGTGTCTA
1 GCTGTGTAACTCACTGTTTTAGAATTAGAGG-CACACGAGCCAGAGACAAGGGCGTGTGTCAA
* *
22300601 GACTGTGTAACCCCCTGTTTT
1 G-CTGTGTAACTCACTGTTTT
22300622 GAGCCACACA
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
62 7 0.10
63 64 0.90
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (62 bp):
GCTGTGTAACTCACTGTTTTAGAATTAGAGGCACACGAGCCAGAGACAAGGGCGTGTGTCAA
Found at i:22314079 original size:19 final size:19
Alignment explanation
Indices: 22314044--22314113 Score: 86
Period size: 19 Copynumber: 3.7 Consensus size: 19
22314034 AGCGCATACA
* *
22314044 GGCACATGAGGTGCATCCT
1 GGCACACGAAGTGCATCCT
22314063 GGCACACGAAGTGCATCCT
1 GGCACACGAAGTGCATCCT
* ** *
22314082 GTCGTACGAAGTGCATCTT
1 GGCACACGAAGTGCATCCT
22314101 GGCACACGAAGTG
1 GGCACACGAAGTG
22314114 TATCTTCGCA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
19 42 1.00
ACGTcount: A:0.24, C:0.26, G:0.30, T:0.20
Consensus pattern (19 bp):
GGCACACGAAGTGCATCCT
Found at i:22314118 original size:19 final size:19
Alignment explanation
Indices: 22313995--22314125 Score: 84
Period size: 19 Copynumber: 6.9 Consensus size: 19
22313985 ACTGGTACAT
* * *
22313995 AAGTGCATATTGTCACATG
1 AAGTGCATCTTGGCACACG
* ** *
22314014 AAGCGCATCTTGGTGCACA
1 AAGTGCATCTTGGCACACG
* * *
22314033 AAGCGCATAC-AGGCACATG
1 AAGTGCAT-CTTGGCACACG
* *
22314052 AGGTGCATCCTGGCACACG
1 AAGTGCATCTTGGCACACG
* * **
22314071 AAGTGCATCCTGTCGTACG
1 AAGTGCATCTTGGCACACG
22314090 AAGTGCATCTTGGCACACG
1 AAGTGCATCTTGGCACACG
* *
22314109 AAGTGTATCTTCGCACA
1 AAGTGCATCTTGGCACA
22314126 TAAGCGTGTA
Statistics
Matches: 84, Mismatches: 26, Indels: 4
0.74 0.23 0.04
Matches are distributed among these distances:
18 1 0.01
19 82 0.98
20 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.22
Consensus pattern (19 bp):
AAGTGCATCTTGGCACACG
Found at i:22316147 original size:145 final size:145
Alignment explanation
Indices: 22315941--22316516 Score: 945
Period size: 145 Copynumber: 3.9 Consensus size: 145
22315931 AACATGTAAT
** **
22315941 TAATTTTATAATAGATTATAATATATATACAATTATCATTATATAATTAAGGTAGATTATTAATG
1 TAATTTTATGGTAGATTAT-A-ATATATACAATTAGAATTATATAATTAAGGTAGATTATTAATG
*
22316006 ATATGTAACCCTATATACAATTATAATTATGATGTATATTTTTATATTAATTATACGTAACCTTA
64 ATATGTAACCCTATATACAATTATAATTATGATGTATATTTTTATATTAATTATACATAACCTTA
* *
22316071 AACCCTAAACCTGTAAC
129 AACCCTAAAACTATAAC
*
22316088 TAATTTTATGGTAAATTATAATATATACAATTAGAATTATATAATTAAGGTAGATTATTAATGAT
1 TAATTTTATGGTAGATTATAATATATACAATTAGAATTATATAATTAAGGTAGATTATTAATGAT
*
22316153 ATGTAACCCTATATACAATTATGATTATGATGTATATTTTTATATTAATTATACATAACCTTAAA
66 ATGTAACCCTATATACAATTATAATTATGATGTATATTTTTATATTAATTATACATAACCTTAAA
22316218 CCCTAAAACTATAAC
131 CCCTAAAACTATAAC
22316233 TAATTTTATGGTAGATTATAATATATACAATTAGAATTATATAATTAAGGTAGATTATTAATGAT
1 TAATTTTATGGTAGATTATAATATATACAATTAGAATTATATAATTAAGGTAGATTATTAATGAT
* *
22316298 ATGTAATCCTATATACAATTATGATTATGATGTATATTTTTATATTAATTATACATAACCTTAAA
66 ATGTAACCCTATATACAATTATAATTATGATGTATATTTTTATATTAATTATACATAACCTTAAA
22316363 CCCTAAAACTATAAC
131 CCCTAAAACTATAAC
*
22316378 TAATTTTATGGTAGATTATAATATATACAATTAGAATTATATAATTAAGGTAGATTATTAATAAT
1 TAATTTTATGGTAGATTATAATATATACAATTAGAATTATATAATTAAGGTAGATTATTAATGAT
* * * * **
22316443 ATGTAACCCTATATACAATTATGATTTTATAATGTAGAGTTTTATATTAATTATATTTAACCTTA
66 ATGTAACCCTATATACAATTAT-A-ATTATGATGTATATTTTTATATTAATTATACATAACCTTA
*
22316508 ATCCCTAAA
129 AACCCTAAA
22316517 TAATATATAC
Statistics
Matches: 406, Mismatches: 21, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
145 347 0.85
146 1 0.00
147 58 0.14
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.42
Consensus pattern (145 bp):
TAATTTTATGGTAGATTATAATATATACAATTAGAATTATATAATTAAGGTAGATTATTAATGAT
ATGTAACCCTATATACAATTATAATTATGATGTATATTTTTATATTAATTATACATAACCTTAAA
CCCTAAAACTATAAC
Found at i:22316251 original size:77 final size:77
Alignment explanation
Indices: 22316170--22316396 Score: 174
Period size: 77 Copynumber: 3.1 Consensus size: 77
22316160 CCTATATACA
22316170 ATTATGATTATGATGTATATTTTTATATTAATTATACATAACCTTAAACCCTAAAACTATAACTA
1 ATTATGATTATGATGTATATTTTTATATTAATTATACATAACCTTAAACCCTAAAACTATAACTA
22316235 ATTTTATGGTAG
66 ATTTTATGGTAG
* * * * * ** * * * * *
22316247 ATTATAATATATACAAT-TAGAATTATATAATTAA-GGTAGATTA--TT-AA---TGATA-TGTA
1 ATTATGAT-TAT--GATGTATATTTTTAT-ATTAATTATACATAACCTTAAACCCTAAAACTATA
** * **
22316303 A-T-CCTATAT-ACA-
62 ACTAATTTTATGGTAG
22316315 ATTATGATTATGATGTATATTTTTATATTAATTATACATAACCTTAAACCCTAAAACTATAACTA
1 ATTATGATTATGATGTATATTTTTATATTAATTATACATAACCTTAAACCCTAAAACTATAACTA
22316380 ATTTTATGGTAG
66 ATTTTATGGTAG
22316392 ATTAT
1 ATTAT
22316397 AATATATACA
Statistics
Matches: 99, Mismatches: 34, Indels: 34
0.59 0.20 0.20
Matches are distributed among these distances:
65 7 0.07
66 13 0.13
67 3 0.03
68 9 0.09
69 3 0.03
70 4 0.04
71 1 0.01
72 7 0.07
73 7 0.07
74 1 0.01
75 4 0.04
76 3 0.03
77 14 0.14
78 3 0.03
79 13 0.13
80 7 0.07
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (77 bp):
ATTATGATTATGATGTATATTTTTATATTAATTATACATAACCTTAAACCCTAAAACTATAACTA
ATTTTATGGTAG
Found at i:22316662 original size:24 final size:23
Alignment explanation
Indices: 22316627--22316672 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
22316617 TATTAGGTAT
22316627 ATTTAAATTATTGTGAATTGTTAA
1 ATTTAAATTATT-TGAATTGTTAA
*
22316651 ATTT-AATATATTTGGATTGTTA
1 ATTTAAAT-TATTTGAATTGTTA
22316673 TTTAACTACT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (23 bp):
ATTTAAATTATTTGAATTGTTAA
Done.