Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 76 of 144
Found at i:22916680 original size:20 final size:20
Alignment explanation
Indices: 22916655--22916728 Score: 98
Period size: 20 Copynumber: 3.7 Consensus size: 20
22916645 GTATGGGATT
22916655 TGCACTTCGGTGCCTCTGTG
1 TGCACTTCGGTGCCTCTGTG
22916675 TGCACTTCGGTGCCTCTGTG
1 TGCACTTCGGTGCCTCTGTG
*
22916695 TACACTTCGGTGTCC-CTGT-
1 TGCACTTCGGTG-CCTCTGTG
*
22916714 TCGCACTACGGTGCC
1 T-GCACTTCGGTGCC
22916729 CCTATTTGCT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
19 3 0.06
20 44 0.90
21 2 0.04
ACGTcount: A:0.08, C:0.32, G:0.27, T:0.32
Consensus pattern (20 bp):
TGCACTTCGGTGCCTCTGTG
Found at i:22917833 original size:36 final size:36
Alignment explanation
Indices: 22917786--22917865 Score: 151
Period size: 36 Copynumber: 2.2 Consensus size: 36
22917776 TATAAGTTTT
22917786 GAAAGTTATGTTGGTTTGGTACATTTTGATGCCTTGC
1 GAAA-TTATGTTGGTTTGGTACATTTTGATGCCTTGC
22917823 GAAATTATGTTGGTTTGGTACATTTTGATGCCTTGC
1 GAAATTATGTTGGTTTGGTACATTTTGATGCCTTGC
22917859 GAAATTA
1 GAAATTA
22917866 GGTCGTTTGG
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 39 0.91
37 4 0.09
ACGTcount: A:0.23, C:0.10, G:0.25, T:0.42
Consensus pattern (36 bp):
GAAATTATGTTGGTTTGGTACATTTTGATGCCTTGC
Found at i:22920797 original size:20 final size:18
Alignment explanation
Indices: 22920772--22920808 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
22920762 ACCTAACACA
22920772 AATTAAATTTAAATCATATT
1 AATTAAA-TTAAA-CATATT
22920792 AATTAAATTAAACATAT
1 AATTAAATTAAACATAT
22920809 CAACATCACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 5 0.29
20 7 0.41
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (18 bp):
AATTAAATTAAACATATT
Found at i:22940998 original size:9 final size:9
Alignment explanation
Indices: 22940986--22941022 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
22940976 GTTATTTAGG
22940986 TTAATTAAT
1 TTAATTAAT
22940995 TTAATTAAT
1 TTAATTAAT
22941004 TTAATTAAT
1 TTAATTAAT
*
22941013 AT-ATTAAT
1 TTAATTAAT
22941021 TT
1 TT
22941023 TTATCAACAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
8 7 0.27
9 19 0.73
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (9 bp):
TTAATTAAT
Found at i:22942116 original size:31 final size:31
Alignment explanation
Indices: 22942078--22942147 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
22942068 AGAGTCAAGT
*
22942078 CTAAAATT-TCAAAATTCAAAAAGTACAGAGA
1 CTAAAATTGACAAAATT-AAAAAGTACAGAGA
* * * *
22942109 CTAAAATTGACCAACTTTAAAAGTACAGTGA
1 CTAAAATTGACAAAATTAAAAAGTACAGAGA
22942140 CTAAAATT
1 CTAAAATT
22942148 AATCAAATTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
31 28 0.85
32 5 0.15
ACGTcount: A:0.50, C:0.14, G:0.10, T:0.26
Consensus pattern (31 bp):
CTAAAATTGACAAAATTAAAAAGTACAGAGA
Found at i:22942169 original size:29 final size:31
Alignment explanation
Indices: 22942096--22942173 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 31
22942086 TCAAAATTCA
* *
22942096 AAAAGTACAGA-GACTAAAATTGACCAACTTT
1 AAAAGTACA-ATGACTAAAATTAACCAACATT
* *
22942127 AAAAGTACAGTGACTAAAATTAATCAA-ATT
1 AAAAGTACAATGACTAAAATTAACCAACATT
22942157 -AAAGTACAATGACTAAA
1 AAAAGTACAATGACTAAA
22942174 CCCACAACTT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
29 16 0.39
30 2 0.05
31 23 0.56
ACGTcount: A:0.53, C:0.13, G:0.12, T:0.23
Consensus pattern (31 bp):
AAAAGTACAATGACTAAAATTAACCAACATT
Found at i:22943822 original size:21 final size:22
Alignment explanation
Indices: 22943796--22943843 Score: 89
Period size: 21 Copynumber: 2.2 Consensus size: 22
22943786 TTTTCGTGTT
22943796 AATTATTTTTTAAG-AAAAATA
1 AATTATTTTTTAAGAAAAAATA
22943817 AATTATTTTTTAAGAAAAAATA
1 AATTATTTTTTAAGAAAAAATA
22943839 AATTA
1 AATTA
22943844 AAGTAGGGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 14 0.54
22 12 0.46
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (22 bp):
AATTATTTTTTAAGAAAAAATA
Found at i:22944140 original size:76 final size:77
Alignment explanation
Indices: 22944050--22944201 Score: 218
Period size: 77 Copynumber: 2.0 Consensus size: 77
22944040 CTTGTTATTA
* * * * *
22944050 AAATTATATCAAATTA-T-ATTTTTCTGTACCAATCAAAATATTTTGTAAAATCTAACCTTTTTT
1 AAATTATATCAAATTATTAATTGTT-AGTACCAATCAAAACATTTTGTAAAATCTAACATTTTGT
22944113 TAGTAAAATTATC
65 TAGTAAAATTATC
*
22944126 AAATTATATCAAATTATTAATTGTTAGTACCAGTCAAAACATTTTGTAAAATCTAACATTTTGTT
1 AAATTATATCAAATTATTAATTGTTAGTACCAATCAAAACATTTTGTAAAATCTAACATTTTGTT
*
22944191 AGTCAAATTAT
66 AGTAAAATTAT
22944202 TAATTGTTAA
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
76 16 0.24
77 46 0.69
78 5 0.07
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.43
Consensus pattern (77 bp):
AAATTATATCAAATTATTAATTGTTAGTACCAATCAAAACATTTTGTAAAATCTAACATTTTGTT
AGTAAAATTATC
Found at i:22944240 original size:77 final size:77
Alignment explanation
Indices: 22944080--22944232 Score: 177
Period size: 77 Copynumber: 2.0 Consensus size: 77
22944070 TTTCTGTACC
* * *
22944080 AATCAAAATATTTTGTAAAATCTAACCTTTTTTTAGTAAAATTATCAAATTATATCAAATTATTA
1 AATCAAAACATTTTGTAAAATCTAACATTTTGTTAGTAAAATTATCAAATTATATCAAATTATTA
* **
22944145 ATTGTTAGTACC
66 AATGTTAGTAAA
* * * * *
22944157 AGTCAAAACATTTTGTAAAATCTAACATTTTGTTAGTCAAATTAT-TAATTGT-T-AATTGTATT
1 AATCAAAACATTTTGTAAAATCTAACATTTTGTTAGTAAAATTATCAAATTATATCAAAT-TATT
22944219 AAATGTTAGTAAA
65 AAATGTTAGTAAA
22944232 A
1 A
22944233 TTATCAAATT
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
74 3 0.05
75 16 0.25
76 5 0.08
77 40 0.62
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.42
Consensus pattern (77 bp):
AATCAAAACATTTTGTAAAATCTAACATTTTGTTAGTAAAATTATCAAATTATATCAAATTATTA
AATGTTAGTAAA
Found at i:22944313 original size:15 final size:15
Alignment explanation
Indices: 22944293--22944325 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
22944283 GGGTTTTGGT
22944293 GTTTTTAAGTTAAAG
1 GTTTTTAAGTTAAAG
*
22944308 GTTTTTAAGTTAATG
1 GTTTTTAAGTTAAAG
22944323 GTT
1 GTT
22944326 AGGGTTAGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
GTTTTTAAGTTAAAG
Found at i:22944333 original size:6 final size:6
Alignment explanation
Indices: 22944322--22944403 Score: 58
Period size: 6 Copynumber: 12.7 Consensus size: 6
22944312 TTAAGTTAAT
* *
22944322 GGTTAG GGTTAG GGTTAG GGTTTTAAG GGTTAG GATTAT GGTTAG GGTTTTTA-
1 GGTTAG GGTTAG GGTTAG GG--TT-AG GGTTAG GGTTAG GGTTAG GG---TTAG
* *
22944375 AGTTAAG GGTTAG GGTTAG GGCTAG GGTT
1 GGTT-AG GGTTAG GGTTAG GGTTAG GGTT
22944404 TTTGTTAGGG
Statistics
Matches: 60, Mismatches: 8, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
5 2 0.03
6 43 0.72
7 5 0.08
8 3 0.05
9 7 0.12
ACGTcount: A:0.20, C:0.01, G:0.41, T:0.38
Consensus pattern (6 bp):
GGTTAG
Found at i:22944347 original size:27 final size:27
Alignment explanation
Indices: 22944317--22944395 Score: 99
Period size: 27 Copynumber: 2.9 Consensus size: 27
22944307 GGTTTTTAAG
22944317 TTAATGGTTAGGGTTAGGGTTAGGG-TT
1 TTAA-GGTTAGGGTTAGGGTTAGGGTTT
* *
22944344 TTAAGGGTTAGGATTATGGTTAGGGTTT
1 TTAA-GGTTAGGGTTAGGGTTAGGGTTT
22944372 TTAA-GTTAAGGGTTAGGGTTAGGG
1 TTAAGGTT-AGGGTTAGGGTTAGGG
22944396 CTAGGGTTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
26 3 0.07
27 36 0.80
28 6 0.13
ACGTcount: A:0.22, C:0.00, G:0.39, T:0.39
Consensus pattern (27 bp):
TTAAGGTTAGGGTTAGGGTTAGGGTTT
Found at i:22944381 original size:33 final size:33
Alignment explanation
Indices: 22944307--22944600 Score: 276
Period size: 33 Copynumber: 9.2 Consensus size: 33
22944297 TTAAGTTAAA
* *
22944307 GGTTTTTAAGTTAATGGTTAGGGTTAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTATGGTTAG
*
22944340 GG---TT---TTAAGGGTTAGGATTATGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTATGGTTAG
* *
22944367 GGTTTTTAAGTTAAGGGTTAGGGTTAGGGCTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTATGGTTAG
* *
22944400 GGTTTTT--GTT-AGGGTTTTGGTGTTTTGAAGTTAAG
1 GGTTTTTAAGTTAAGGG-TTAGG-GTTATG--GTT-AG
*
22944435 GGTTTTTAAGTTAAGGGTTAGGGTTAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTATGGTTAG
*
22944468 GGTTTTTAAGTTAAGGGTTAAGGTTATGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTATGGTTAG
22944501 GGTTTTTAAGTTAAGGGTTA--G--A--GTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTATGGTTAG
* * * *
22944528 GGTTTTTAAATTAAGTGTTAAGGCTATGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTATGGTTAG
* * * * *
22944561 GGTTTTAAAGTTAAGGGTTAAGGCTAGGGCTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTATGGTTAG
22944594 GGTTTTT
1 GGTTTTT
22944601 GTTAGGGTTT
Statistics
Matches: 218, Mismatches: 23, Indels: 40
0.78 0.08 0.14
Matches are distributed among these distances:
27 45 0.21
29 2 0.01
30 8 0.04
31 9 0.04
32 4 0.02
33 121 0.56
34 5 0.02
35 9 0.04
36 4 0.02
37 7 0.03
38 4 0.02
ACGTcount: A:0.22, C:0.01, G:0.35, T:0.41
Consensus pattern (33 bp):
GGTTTTTAAGTTAAGGGTTAGGGTTATGGTTAG
Found at i:22944445 original size:15 final size:15
Alignment explanation
Indices: 22944421--22944519 Score: 67
Period size: 15 Copynumber: 6.2 Consensus size: 15
22944411 GGGTTTTGGT
*
22944421 GTTTTGAAGTTAAGG
1 GTTTTTAAGTTAAGG
22944436 GTTTTTAAGTTAAGG
1 GTTTTTAAGTTAAGG
* *
22944451 GTTAGGGTTAGGGTT-AGG
1 GTT---TTTA-AGTTAAGG
22944469 GTTTTTAAGTTAAGG
1 GTTTTTAAGTTAAGG
* *
22944484 GTTAAGGTTATGGTT-AGG
1 GTT---TTTA-AGTTAAGG
22944502 GTTTTTAAGTTAAGG
1 GTTTTTAAGTTAAGG
22944517 GTT
1 GTT
22944520 AGAGTTAGGG
Statistics
Matches: 65, Mismatches: 9, Indels: 20
0.69 0.10 0.21
Matches are distributed among these distances:
14 6 0.09
15 35 0.54
18 18 0.28
19 6 0.09
ACGTcount: A:0.23, C:0.00, G:0.34, T:0.42
Consensus pattern (15 bp):
GTTTTTAAGTTAAGG
Found at i:22944450 original size:68 final size:65
Alignment explanation
Indices: 22944307--22944609 Score: 312
Period size: 60 Copynumber: 4.8 Consensus size: 65
22944297 TTAAGTTAAA
* *
22944307 GGTTTTTAAGTTAATGGTTAGGGTTAGGGTTAGGG---TT--TTAAGGGTT-AGGATTATGGTTA
1 GGTTTTTAAGTTAAGGGTTAGGGTTAGGGCTAGGGTTTTTAGTTAAGGGTTAAGG-TTATGGTTA
22944366 G
65 G
** *
22944367 GGTTTTTAAGTTAAGGGTTAGGGTTAGGGCTAGGGTTTTT-GTT-AGGGTTTTGGTGTTTTGAAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTAGGGCTAGGGTTTTTAGTTAAGGG-TTAAG-GTTATG--G
22944430 TTAAG
62 TT-AG
*
22944435 GGTTTTTAAGTTAAGGGTTAGGGTTAGGGTTAGGGTTTTTAAGTTAAGGGTTAAGGTTATGGTTA
1 GGTTTTTAAGTTAAGGGTTAGGGTTAGGGCTAGGGTTTTT-AGTTAAGGGTTAAGGTTATGGTTA
22944500 G
65 G
* * * * *
22944501 GGTTTTTAAGTTAAGGGTTAGAGTTAGGG-T----TTTTAAATTAAGTGTTAAGGCTATGGTTAG
1 GGTTTTTAAGTTAAGGGTTAGGGTTAGGGCTAGGGTTTTTAGTTAAGGGTTAAGGTTATGGTTAG
* * *
22944561 GGTTTTAAAGTTAAGGGTTAAGGCTAGGGCTAGGGTTTTT-GTT-AGGGTT
1 GGTTTTTAAGTTAAGGGTTAGGGTTAGGGCTAGGGTTTTTAGTTAAGGGTT
22944610 TTGTTGTTTT
Statistics
Matches: 205, Mismatches: 20, Indels: 33
0.79 0.08 0.13
Matches are distributed among these distances:
60 80 0.39
61 5 0.02
63 11 0.05
64 6 0.03
65 10 0.05
66 31 0.15
67 6 0.03
68 41 0.20
69 5 0.02
70 6 0.03
71 4 0.02
ACGTcount: A:0.22, C:0.01, G:0.35, T:0.42
Consensus pattern (65 bp):
GGTTTTTAAGTTAAGGGTTAGGGTTAGGGCTAGGGTTTTTAGTTAAGGGTTAAGGTTATGGTTAG
Found at i:22944454 original size:128 final size:134
Alignment explanation
Indices: 22944251--22944529 Score: 410
Period size: 128 Copynumber: 2.1 Consensus size: 134
22944241 TTATATCAGA
* *
22944251 TTAGGGTTAGGGTTAGGGTTTTGTTAGCATTAGGGTTTTGGTGTTTTTAAGTTAAAGGTTTTTAA
1 TTAGGGTTAGGGCTAGGGTTTTGTTAG-ATTAGGGTTTTGGTGTTTTGAAGTTAAAGGTTTTTAA
*
22944316 GTTAATGGTTAGGGTTAGGGTTAGGG-TT-TTAAGGGTT-AGGATTATGGTTAGGGTTTTTAAGT
65 GTTAAGGGTTAGGGTTAGGGTTAGGGTTTATTAAGGGTTAAGG-TTATGGTTAGGGTTTTTAAGT
22944378 TAAGGG
129 TAAGGG
*
22944384 TTAGGGTTAGGGCTAGGG-TTT-TT-G-TTAGGGTTTTGGTGTTTTGAAGTTAAGGGTTTTTAAG
1 TTAGGGTTAGGGCTAGGGTTTTGTTAGATTAGGGTTTTGGTGTTTTGAAGTTAAAGGTTTTTAAG
22944445 TTAAGGGTTAGGGTTAGGGTTAGGGTTTTTAAGTTAAGGGTTAAGGTTATGGTTAGGGTTTTTAA
66 TTAAGGGTTAGGGTTAGGGTTAGGG--TTT-A-TTAAGGGTTAAGGTTATGGTTAGGGTTTTTAA
22944510 GTTAAGGG
127 GTTAAGGG
*
22944518 TTAGAGTTAGGG
1 TTAGGGTTAGGG
22944530 TTTTTAAATT
Statistics
Matches: 134, Mismatches: 5, Indels: 13
0.88 0.03 0.09
Matches are distributed among these distances:
128 59 0.44
130 1 0.01
131 4 0.03
132 3 0.02
133 17 0.13
134 47 0.35
135 3 0.02
ACGTcount: A:0.21, C:0.01, G:0.36, T:0.43
Consensus pattern (134 bp):
TTAGGGTTAGGGCTAGGGTTTTGTTAGATTAGGGTTTTGGTGTTTTGAAGTTAAAGGTTTTTAAG
TTAAGGGTTAGGGTTAGGGTTAGGGTTTATTAAGGGTTAAGGTTATGGTTAGGGTTTTTAAGTTA
AGGG
Found at i:22944947 original size:21 final size:20
Alignment explanation
Indices: 22944914--22944968 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 20
22944904 AGCTTCTAGT
* *
22944914 CGGGGTTGTGGTTGCTCCGG
1 CGGGGTTCTGGTTCCTCCGG
22944934 CGGGGATTCTGGTTCCTCCGG
1 CGGGG-TTCTGGTTCCTCCGG
**
22944955 TAGGGTATCTGGTT
1 CGGGGT-TCTGGTT
22944969 GTCAGTGTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 6 0.21
21 23 0.79
ACGTcount: A:0.05, C:0.20, G:0.42, T:0.33
Consensus pattern (20 bp):
CGGGGTTCTGGTTCCTCCGG
Found at i:22945251 original size:18 final size:18
Alignment explanation
Indices: 22945210--22945252 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
22945200 GATTGGGAAA
* * *
22945210 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
*
22945228 AAGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
22945246 AGGATAC
1 AGGATAC
22945253 GCACCTGGCA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.47, C:0.09, G:0.26, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:22947133 original size:11 final size:12
Alignment explanation
Indices: 22947119--22947181 Score: 59
Period size: 11 Copynumber: 5.7 Consensus size: 12
22947109 TTAAATATGG
22947119 ATTTGAGA-GAA
1 ATTTGAGAGGAA
22947130 ATTTG-GAAGGAA
1 ATTTGAG-AGGAA
22947142 A-TTGAGA--ACA
1 ATTTGAGAGGA-A
22947152 ATTTGAGAGGAA
1 ATTTGAGAGGAA
22947164 A-TTGAGAGGAA
1 ATTTGAGAGGAA
22947175 A-TTGAGA
1 ATTTGAGA
22947182 AAATAATTGA
Statistics
Matches: 45, Mismatches: 0, Indels: 14
0.76 0.00 0.24
Matches are distributed among these distances:
9 1 0.02
10 3 0.07
11 33 0.73
12 7 0.16
13 1 0.02
ACGTcount: A:0.44, C:0.02, G:0.30, T:0.24
Consensus pattern (12 bp):
ATTTGAGAGGAA
Found at i:22947146 original size:22 final size:22
Alignment explanation
Indices: 22947121--22947181 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 22
22947111 AAATATGGAT
22947121 TTGAGAGAAATTTG-GAAGGAAA
1 TTGAGAGAAATTTGAG-AGGAAA
22947143 TTGAGA-ACAATTTGAGAGGAAA
1 TTGAGAGA-AATTTGAGAGGAAA
22947165 TTGAGAGGAAA-TTGAGA
1 TTGAGA-GAAATTTGAGA
22947182 AAATAATTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
21 1 0.03
22 30 0.86
23 3 0.09
24 1 0.03
ACGTcount: A:0.44, C:0.02, G:0.31, T:0.23
Consensus pattern (22 bp):
TTGAGAGAAATTTGAGAGGAAA
Found at i:22947156 original size:33 final size:33
Alignment explanation
Indices: 22947119--22947182 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 33
22947109 TTAAATATGG
22947119 ATTTGAGA-GAAATTTG-GAAGGAAATTGAGAACA
1 ATTTGAGAGGAAA-TTGAG-AGGAAATTGAGAACA
22947152 ATTTGAGAGGAAATTGAGAGGAAATTGAGAA
1 ATTTGAGAGGAAATTGAGAGGAAATTGAGAA
22947183 AATAATTGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 24 0.83
34 5 0.17
ACGTcount: A:0.45, C:0.02, G:0.30, T:0.23
Consensus pattern (33 bp):
ATTTGAGAGGAAATTGAGAGGAAATTGAGAACA
Found at i:22948354 original size:9 final size:9
Alignment explanation
Indices: 22948329--22948413 Score: 63
Period size: 9 Copynumber: 9.7 Consensus size: 9
22948319 ATTAGCAATT
22948329 AATTTTTTA
1 AATTTTTTA
*
22948338 AATATTTTA
1 AATTTTTTA
*
22948347 TATTTTTTTA
1 -AATTTTTTA
*
22948357 AGAATTTTTA
1 A-ATTTTTTA
22948367 AATTTTTTA
1 AATTTTTTA
*
22948376 AA----ATA
1 AATTTTTTA
22948381 AATTTTTTGA
1 AATTTTTT-A
*
22948391 ATTTTTTTA
1 AATTTTTTA
22948400 AA-TTTTTA
1 AATTTTTTA
22948408 AATTTT
1 AATTTT
22948414 AAACATTAAT
Statistics
Matches: 58, Mismatches: 10, Indels: 16
0.69 0.12 0.19
Matches are distributed among these distances:
5 4 0.07
8 8 0.14
9 24 0.41
10 22 0.38
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.62
Consensus pattern (9 bp):
AATTTTTTA
Found at i:22948396 original size:10 final size:10
Alignment explanation
Indices: 22948331--22948406 Score: 57
Period size: 10 Copynumber: 7.4 Consensus size: 10
22948321 TAGCAATTAA
22948331 TTTTTTAAA-
1 TTTTTTAAAT
* *
22948340 TATTTTATAT
1 TTTTTTAAAT
22948350 TTTTTTAAGA-
1 TTTTTTAA-AT
*
22948360 ATTTTTAAAT
1 TTTTTTAAAT
*
22948370 TTTTTAAAAT
1 TTTTTTAAAT
*
22948380 AAATTTTTTGAAT
1 ---TTTTTTAAAT
22948393 TTTTTTAAAT
1 TTTTTTAAAT
22948403 TTTT
1 TTTT
22948407 AAATTTTAAA
Statistics
Matches: 51, Mismatches: 10, Indels: 11
0.71 0.14 0.15
Matches are distributed among these distances:
9 8 0.16
10 34 0.67
11 1 0.02
13 8 0.16
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (10 bp):
TTTTTTAAAT
Found at i:22949799 original size:30 final size:30
Alignment explanation
Indices: 22949763--22949830 Score: 109
Period size: 30 Copynumber: 2.2 Consensus size: 30
22949753 ACTTGTTTTA
22949763 TTGTTAATTTAGTTATTATTTTAAAGGCAT
1 TTGTTAATTTAGTTATTATTTTAAAGGCAT
* *
22949793 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTAGTTATTATTTTAAAGGCAT
22949823 TTGCTTAA
1 TTG-TTAA
22949831 GTCGTATCTA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
30 31 0.89
31 4 0.11
ACGTcount: A:0.26, C:0.04, G:0.15, T:0.54
Consensus pattern (30 bp):
TTGTTAATTTAGTTATTATTTTAAAGGCAT
Found at i:22949917 original size:25 final size:24
Alignment explanation
Indices: 22949871--22949916 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
22949861 ACATATTTTT
22949871 TAAAATTTATTTTCAATTTTTTGG
1 TAAAATTTATTTTCAATTTTTTGG
22949895 TAAATATTTATTTT-AATTTTTT
1 TAAA-ATTTATTTTCAATTTTTT
22949917 TAGTATTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.63
Consensus pattern (24 bp):
TAAAATTTATTTTCAATTTTTTGG
Found at i:22951262 original size:94 final size:94
Alignment explanation
Indices: 22951101--22951288 Score: 358
Period size: 94 Copynumber: 2.0 Consensus size: 94
22951091 ATGTGATACA
22951101 TCTCTGACCGAATCCGACCTCCAAGCTCTTAACACTACAAAACAAGGGAAAAAGAAACAGGGTAA
1 TCTCTGACCGAATCCGACCTCCAAGCTCTTAACACTACAAAACAAGGGAAAAAGAAACAGGGTAA
22951166 GCACTTTGTGCTTAGTAAGCTCATGTAAC
66 GCACTTTGTGCTTAGTAAGCTCATGTAAC
* *
22951195 TCTCTGACCGAATCCGACCTCCGAGCTCTTAACACTACAAAACAGGGGAAAAAGAAACAGGGTAA
1 TCTCTGACCGAATCCGACCTCCAAGCTCTTAACACTACAAAACAAGGGAAAAAGAAACAGGGTAA
22951260 GCACTTTGTGCTTAGTAAGCTCATGTAAC
66 GCACTTTGTGCTTAGTAAGCTCATGTAAC
22951289 AAGAATTATA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 92 1.00
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.21
Consensus pattern (94 bp):
TCTCTGACCGAATCCGACCTCCAAGCTCTTAACACTACAAAACAAGGGAAAAAGAAACAGGGTAA
GCACTTTGTGCTTAGTAAGCTCATGTAAC
Found at i:22952766 original size:512 final size:512
Alignment explanation
Indices: 22952059--22953082 Score: 2048
Period size: 512 Copynumber: 2.0 Consensus size: 512
22952049 ATACTTGTTC
22952059 GTAAACAAAAATCTACTAATCTCGAACTTTTTCTTTTCCTCGATCTAGCTTCGTATTTCAATTTT
1 GTAAACAAAAATCTACTAATCTCGAACTTTTTCTTTTCCTCGATCTAGCTTCGTATTTCAATTTT
22952124 ATGGATCTAAATAAATAAATTTAATCATTAATCTAATGCATTTCATGTTCATATGTAACATTCTC
66 ATGGATCTAAATAAATAAATTTAATCATTAATCTAATGCATTTCATGTTCATATGTAACATTCTC
22952189 TATAATTTCATCATTAGTTATAGTGCATTCAAAGCTGTCTCATTGAGTCATAATCAGTAAATTAT
131 TATAATTTCATCATTAGTTATAGTGCATTCAAAGCTGTCTCATTGAGTCATAATCAGTAAATTAT
22952254 TTATATCTTGAGCTATCGAACTCCAAATTAAGATCCGCTAATTTTCCCCGAAACTAGACTCACAT
196 TTATATCTTGAGCTATCGAACTCCAAATTAAGATCCGCTAATTTTCCCCGAAACTAGACTCACAT
22952319 ATCTTCTTCCATAAAATTTTCAAAATTTTTGGTTTATCCAATAAGTACATTTTATTCTTTAAAGT
261 ATCTTCTTCCATAAAATTTTCAAAATTTTTGGTTTATCCAATAAGTACATTTTATTCTTTAAAGT
22952384 TTCCCCTGTTTTACTGTTCGACAGTTCCGACCCCTCTTCACTAAGAATTAATTATCTCATTATAC
326 TTCCCCTGTTTTACTGTTCGACAGTTCCGACCCCTCTTCACTAAGAATTAATTATCTCATTATAC
22952449 AGAATTTGGATGATGTTCTTGTTTGTTTCTTTTGAAAATAGACTCATTAAGGATTTTAAACATAT
391 AGAATTTGGATGATGTTCTTGTTTGTTTCTTTTGAAAATAGACTCATTAAGGATTTTAAACATAT
22952514 AAATTTAAGCCCATAATTATTTTTCTAAAATTTTTGATGATTTTCCAAAGTCAGAAA
456 AAATTTAAGCCCATAATTATTTTTCTAAAATTTTTGATGATTTTCCAAAGTCAGAAA
22952571 GTAAACAAAAATCTACTAATCTCGAACTTTTTCTTTTCCTCGATCTAGCTTCGTATTTCAATTTT
1 GTAAACAAAAATCTACTAATCTCGAACTTTTTCTTTTCCTCGATCTAGCTTCGTATTTCAATTTT
22952636 ATGGATCTAAATAAATAAATTTAATCATTAATCTAATGCATTTCATGTTCATATGTAACATTCTC
66 ATGGATCTAAATAAATAAATTTAATCATTAATCTAATGCATTTCATGTTCATATGTAACATTCTC
22952701 TATAATTTCATCATTAGTTATAGTGCATTCAAAGCTGTCTCATTGAGTCATAATCAGTAAATTAT
131 TATAATTTCATCATTAGTTATAGTGCATTCAAAGCTGTCTCATTGAGTCATAATCAGTAAATTAT
22952766 TTATATCTTGAGCTATCGAACTCCAAATTAAGATCCGCTAATTTTCCCCGAAACTAGACTCACAT
196 TTATATCTTGAGCTATCGAACTCCAAATTAAGATCCGCTAATTTTCCCCGAAACTAGACTCACAT
22952831 ATCTTCTTCCATAAAATTTTCAAAATTTTTGGTTTATCCAATAAGTACATTTTATTCTTTAAAGT
261 ATCTTCTTCCATAAAATTTTCAAAATTTTTGGTTTATCCAATAAGTACATTTTATTCTTTAAAGT
22952896 TTCCCCTGTTTTACTGTTCGACAGTTCCGACCCCTCTTCACTAAGAATTAATTATCTCATTATAC
326 TTCCCCTGTTTTACTGTTCGACAGTTCCGACCCCTCTTCACTAAGAATTAATTATCTCATTATAC
22952961 AGAATTTGGATGATGTTCTTGTTTGTTTCTTTTGAAAATAGACTCATTAAGGATTTTAAACATAT
391 AGAATTTGGATGATGTTCTTGTTTGTTTCTTTTGAAAATAGACTCATTAAGGATTTTAAACATAT
22953026 AAATTTAAGCCCATAATTATTTTTCTAAAATTTTTGATGATTTTCCAAAGTCAGAAA
456 AAATTTAAGCCCATAATTATTTTTCTAAAATTTTTGATGATTTTCCAAAGTCAGAAA
22953083 AGGGGAACCC
Statistics
Matches: 512, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
512 512 1.00
ACGTcount: A:0.32, C:0.17, G:0.10, T:0.41
Consensus pattern (512 bp):
GTAAACAAAAATCTACTAATCTCGAACTTTTTCTTTTCCTCGATCTAGCTTCGTATTTCAATTTT
ATGGATCTAAATAAATAAATTTAATCATTAATCTAATGCATTTCATGTTCATATGTAACATTCTC
TATAATTTCATCATTAGTTATAGTGCATTCAAAGCTGTCTCATTGAGTCATAATCAGTAAATTAT
TTATATCTTGAGCTATCGAACTCCAAATTAAGATCCGCTAATTTTCCCCGAAACTAGACTCACAT
ATCTTCTTCCATAAAATTTTCAAAATTTTTGGTTTATCCAATAAGTACATTTTATTCTTTAAAGT
TTCCCCTGTTTTACTGTTCGACAGTTCCGACCCCTCTTCACTAAGAATTAATTATCTCATTATAC
AGAATTTGGATGATGTTCTTGTTTGTTTCTTTTGAAAATAGACTCATTAAGGATTTTAAACATAT
AAATTTAAGCCCATAATTATTTTTCTAAAATTTTTGATGATTTTCCAAAGTCAGAAA
Found at i:22956873 original size:17 final size:18
Alignment explanation
Indices: 22956853--22956887 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
22956843 CAAATGTTTC
22956853 CCATTTC-TCCATTTATA
1 CCATTTCATCCATTTATA
22956870 CCATTTCTATCCATTTAT
1 CCATTTC-ATCCATTTAT
22956888 GTTCATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
19 9 0.56
ACGTcount: A:0.23, C:0.29, G:0.00, T:0.49
Consensus pattern (18 bp):
CCATTTCATCCATTTATA
Found at i:22958202 original size:21 final size:22
Alignment explanation
Indices: 22958158--22958210 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
22958148 ATGGGTAGGT
22958158 AGTG-TTGAGTTTCAAAAACGA
1 AGTGATTGAGTTTCAAAAACGA
*
22958179 AGT-ATTGAGTTTGAAAATAC-A
1 AGTGATTGAGTTTCAAAA-ACGA
22958200 AGTGA-TGAGTT
1 AGTGATTGAGTT
22958211 GACTTTGGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
21 25 0.89
22 3 0.11
ACGTcount: A:0.38, C:0.06, G:0.25, T:0.32
Consensus pattern (22 bp):
AGTGATTGAGTTTCAAAAACGA
Found at i:22958672 original size:21 final size:22
Alignment explanation
Indices: 22958631--22958677 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
22958621 ATGACGATGT
22958631 CAATGCAATACTTTTTCAAAAA
1 CAATGCAATACTTTTTCAAAAA
22958653 CAATGC-ATA-TTTTTCAAAAAA
1 CAATGCAATACTTTTTC-AAAAA
22958674 CAAT
1 CAAT
22958678 TCCTACCCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 6 0.25
21 12 0.50
22 6 0.25
ACGTcount: A:0.47, C:0.17, G:0.04, T:0.32
Consensus pattern (22 bp):
CAATGCAATACTTTTTCAAAAA
Found at i:22964662 original size:16 final size:15
Alignment explanation
Indices: 22964635--22964686 Score: 77
Period size: 15 Copynumber: 3.4 Consensus size: 15
22964625 AGTTTCGTCA
22964635 CTATAGTTTCAGAAT
1 CTATAGTTTCAGAAT
22964650 CTATAGTTTTCAGAAT
1 CTATAG-TTTCAGAAT
* *
22964666 CTAGAGTTTCACAAT
1 CTATAGTTTCAGAAT
22964681 CTATAG
1 CTATAG
22964687 ACAATTTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
15 19 0.58
16 14 0.42
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.38
Consensus pattern (15 bp):
CTATAGTTTCAGAAT
Found at i:22967626 original size:17 final size:17
Alignment explanation
Indices: 22967604--22967636 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
22967594 TAGTTATTAT
22967604 GGAGTCATTCCACTAAC
1 GGAGTCATTCCACTAAC
*
22967621 GGAGTCATTCTACTAA
1 GGAGTCATTCCACTAA
22967637 AGTACCATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.27
Consensus pattern (17 bp):
GGAGTCATTCCACTAAC
Found at i:22982148 original size:17 final size:17
Alignment explanation
Indices: 22982122--22982156 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
22982112 GATTATTTTT
22982122 AGTTATATTTTAA-TTA
1 AGTTATATTTTAAGTTA
22982138 AGTTGATATTTTAAGTTA
1 AGTT-ATATTTTAAGTTA
22982156 A
1 A
22982157 TTCATGATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 9 0.53
18 4 0.24
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.51
Consensus pattern (17 bp):
AGTTATATTTTAAGTTA
Found at i:22988004 original size:27 final size:27
Alignment explanation
Indices: 22987974--22988025 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
22987964 AGAGTTAGTG
22987974 GATTATTAGGCAATTATTAGGTTTCTC
1 GATTATTAGGCAATTATTAGGTTTCTC
22988001 GATTATTAGGCAATTATTAGGTTTC
1 GATTATTAGGCAATTATTAGGTTTC
22988026 ATTGTATCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.27, C:0.10, G:0.19, T:0.44
Consensus pattern (27 bp):
GATTATTAGGCAATTATTAGGTTTCTC
Found at i:22991242 original size:62 final size:62
Alignment explanation
Indices: 22991156--22991289 Score: 252
Period size: 62 Copynumber: 2.2 Consensus size: 62
22991146 AAACTTCAGC
*
22991156 TAAAAAAT-ATATATATTCTCATAACATACACTGTAATAAATGTATTTATTAAATTGTCATA
1 TAAAAATTAATATATATTCTCATAACATACACTGTAATAAATGTATTTATTAAATTGTCATA
22991217 TAAAAATTAATATATATTCTCATAACATACACTGTAATAAATGTATTTATTAAATTGTCATA
1 TAAAAATTAATATATATTCTCATAACATACACTGTAATAAATGTATTTATTAAATTGTCATA
22991279 TAAAAATTAAT
1 TAAAAATTAAT
22991290 TTTTGCTTTA
Statistics
Matches: 71, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
61 7 0.10
62 64 0.90
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (62 bp):
TAAAAATTAATATATATTCTCATAACATACACTGTAATAAATGTATTTATTAAATTGTCATA
Found at i:23004322 original size:12 final size:12
Alignment explanation
Indices: 23004307--23004332 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
23004297 ATAAGTAAAT
23004307 AATATTAAATAA
1 AATATTAAATAA
23004319 AATATTAAATAA
1 AATATTAAATAA
23004331 AA
1 AA
23004333 CTGATTTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AATATTAAATAA
Found at i:23006033 original size:100 final size:100
Alignment explanation
Indices: 23005928--23006204 Score: 500
Period size: 100 Copynumber: 2.8 Consensus size: 100
23005918 GCTGTTACGG
*
23005928 CTTCAATCTTTTTAATTGCAATGTCAGGGAAGCAAGATTCGTCGTCGTAGCTTCAATATGATCCA
1 CTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGTCGTCGTAGCTTCAATATGATCCA
23005993 CTGCATCGCCAGGGAAGTACAATGCACCATCGCGA
66 CTGCATCGCCAGGGAAGTACAATGCACCATCGCGA
23006028 CTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGTCGTCGTAGCTTCAATATGATCCA
1 CTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGTCGTCGTAGCTTCAATATGATCCA
23006093 CTGCATCGCCAGGGAAGTACAATGCACCATCGCGA
66 CTGCATCGCCAGGGAAGTACAATGCACCATCGCGA
* * * *
23006128 CTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCA
1 CTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGTCGTCGTAGCTTCAATATGATCCA
*
23006193 CTGTATCGCCAG
66 CTGCATCGCCAG
23006205 AGAGATAATG
Statistics
Matches: 171, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
100 171 1.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (100 bp):
CTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGTCGTCGTAGCTTCAATATGATCCA
CTGCATCGCCAGGGAAGTACAATGCACCATCGCGA
Found at i:23006182 original size:50 final size:50
Alignment explanation
Indices: 23005927--23006186 Score: 163
Period size: 50 Copynumber: 5.2 Consensus size: 50
23005917 CGCTGTTACG
*
23005927 GCTTCAATCTTTTTAATTGCAATGTCAGGGAAGCAAGATTCGTCGTCGTA
1 GCTTCAATCTTTTTAATTGCAATGTCAGGGAAGCAAGATTCGCCGTCGTA
* ** ** * * * * * * *
23005977 GCTTCAATATGATCCACTGC-ATCGCCAGGGAAGTACA-ATGCACCATCG-C
1 GCTTCAATCTTTTTAATTGCAAT-GTCAGGGAAGCA-AGATTCGCCGTCGTA
* *
23006026 GACTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGTCGTCGTA
1 G-CTTCAATCTTTTTAATTGCAATGTCAGGGAAGCAAGATTCGCCGTCGTA
* ** ** * * * * * * *
23006077 GCTTCAATATGATCCACTGC-ATCGCCAGGGAAGTACA-ATGCACCATCG-C
1 GCTTCAATCTTTTTAATTGCAAT-GTCAGGGAAGCA-AGATTCGCCGTCGTA
* *
23006126 GACTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTA
1 G-CTTCAATCTTTTTAATTGCAATGTCAGGGAAGCAAGATTCGCCGTCGTA
23006177 GCTTCAATCT
1 GCTTCAATCT
23006187 GTTCCACTGT
Statistics
Matches: 143, Mismatches: 55, Indels: 24
0.64 0.25 0.11
Matches are distributed among these distances:
49 8 0.06
50 127 0.89
51 8 0.06
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (50 bp):
GCTTCAATCTTTTTAATTGCAATGTCAGGGAAGCAAGATTCGCCGTCGTA
Found at i:23006406 original size:45 final size:44
Alignment explanation
Indices: 23006290--23006567 Score: 197
Period size: 43 Copynumber: 6.3 Consensus size: 44
23006280 CACTAGTATG
* * * *
23006290 GGAAGACAAGATCTGC-ATCTTCGATCCACTTCCTACCAATATA
1 GGAAGACAAGATCTGCTATCTTCGATCTACTTACTACCAACACA
* * * ** * *
23006333 AGAAGACAGGACCTGCTATCTTTAATCTATTTTACTGCCAACACA
1 GGAAGACAAGATCTGCTATCTTCGATCTA-CTTACTACCAACACA
* * * * **
23006378 GGAAGACAAGATCTGCTTTCTTCGATCTACTCTGCCACCAATATG
1 GGAAGACAAGATCTGCTATCTTCGATCTACT-TACTACCAACACA
* * * * *
23006423 GGAA-AGCAAGATCTAC-ATCTTCGATCCACTTCCTACCAATATA
1 GGAAGA-CAAGATCTGCTATCTTCGATCTACTTACTACCAACACA
* * * * *
23006466 AGAAGACAAGATCTGC-ATCTTCGATCCACTTCCTACCAATATA
1 GGAAGACAAGATCTGCTATCTTCGATCTACTTACTACCAACACA
* * * *
23006509 GGAAGACAAGACCTGCTATCTTTGATCTACTTCAC-GCCAATACA
1 GGAAGACAAGATCTGCTATCTTCGATCTACTT-ACTACCAACACA
*
23006553 TGAAGACAAGATCTG
1 GGAAGACAAGATCTG
23006568 TTTTAATGAC
Statistics
Matches: 187, Mismatches: 41, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
43 76 0.41
44 57 0.30
45 54 0.29
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (44 bp):
GGAAGACAAGATCTGCTATCTTCGATCTACTTACTACCAACACA
Found at i:23006464 original size:43 final size:44
Alignment explanation
Indices: 23006292--23006519 Score: 198
Period size: 43 Copynumber: 5.2 Consensus size: 44
23006282 CTAGTATGGG
* *
23006292 AAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAAG-
1 AAGACAAGATCTACATCTTCGATCCACTTCCTACCAATATAGGA
* * * ** * * * * * *
23006335 AAGACAGGACCTGCTATCTTTAATCTATTTTACTGCCAACACAGG-
1 AAGACAAGATCTAC-ATCTTCGATCCA-CTTCCTACCAATATAGGA
* * * *
23006380 AAGACAAGATCTGCTTTCTTCGATCTACTCTGCC-ACCAATATGGGA
1 AAGACAAGATCTAC-ATCTTCGATCCACT-T-CCTACCAATATAGGA
*
23006426 AAG-CAAGATCTACATCTTCGATCCACTTCCTACCAATATAAG-
1 AAGACAAGATCTACATCTTCGATCCACTTCCTACCAATATAGGA
*
23006468 AAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGG-
1 AAGACAAGATCTACATCTTCGATCCACTTCCTACCAATATAGGA
23006511 AAGACAAGA
1 AAGACAAGA
23006520 CCTGCTATCT
Statistics
Matches: 149, Mismatches: 29, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
42 5 0.03
43 68 0.46
44 22 0.15
45 50 0.34
46 4 0.03
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.26
Consensus pattern (44 bp):
AAGACAAGATCTACATCTTCGATCCACTTCCTACCAATATAGGA
Found at i:23006470 original size:133 final size:131
Alignment explanation
Indices: 23006252--23006541 Score: 368
Period size: 133 Copynumber: 2.2 Consensus size: 131
23006242 TCAGAGAGAT
** * * *
23006252 AAGATCTATTTTCTTCGATCTACTTCGCCACTAGTATGGGAAGACAAGATCTGCATCTTCGATCC
1 AAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTACATCTTCGATCC
* * * * *
23006317 ACTTCCTACCAATATAAGAAGACAGGACCTGCTATCTTTAATCTATTTTACTGCCAACACAGGAA
66 ACTTCCTACCAATATAAGAAGACAAGACCTGC-ATCTTCAATCCA-CTTACTACCAACACAGGAA
23006382 GAC
129 GAC
23006385 AAGATCTGCTTTCTTCGATCTAC-TCTGCCACCAATATGGGAA-AGCAAGATCTACATCTTCGAT
1 AAGATCTGCTTTCTTCGATCTACTTC-GCCACCAATATGGGAAGA-CAAGATCTACATCTTCGAT
* * * * *
23006448 CCACTTCCTACCAATATAAGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAA
64 CCACTTCCTACCAATATAAGAAGACAAGACCTGCATCTTCAATCCACTTACTACCAACACAGGAA
23006513 GAC
129 GAC
* * *
23006516 AAGACCTGCTATCTTTGATCTACTTC
1 AAGATCTGCTTTCTTCGATCTACTTC
23006542 ACGCCAATAC
Statistics
Matches: 136, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
131 37 0.27
132 14 0.10
133 85 0.62
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (131 bp):
AAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTACATCTTCGATCC
ACTTCCTACCAATATAAGAAGACAAGACCTGCATCTTCAATCCACTTACTACCAACACAGGAAGA
C
Found at i:23007261 original size:108 final size:108
Alignment explanation
Indices: 23007072--23007273 Score: 273
Period size: 108 Copynumber: 1.9 Consensus size: 108
23007062 AAAAATGCTT
* * * *
23007072 GAAAAAGATTATCAATATGGACAAGATGAAATTTTGTTGAGAGTAAAGCTTTAAACAAACAAATC
1 GAAAAAGATTATCAATATGGACAAGATGAAATTTTATTGAGAGCAAAACTCTAAACAAACAAATC
* *
23007137 AATCGAGGTAGCAAATTTTGCTAAGATACGAGATGAATAAGAC
66 AATCAAGATAGCAAATTTTGCTAAGATACGAGATGAATAAGAC
* **
23007180 GAAAAAGATTATCACA-ATGGATAAGAT-AGAATTTTATTGAGAGCAAAACTCTAAATGAACAAA
1 GAAAAAGATTATCA-ATATGGACAAGATGA-AATTTTATTGAGAGCAAAACTCTAAACAAACAAA
* *
23007243 TTAGTCAAGATAGCAAATTTTGCTAAGATAC
64 TCAATCAAGATAGCAAATTTTGCTAAGATAC
23007274 AAAAATGACT
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
107 1 0.01
108 79 0.98
109 1 0.01
ACGTcount: A:0.46, C:0.10, G:0.18, T:0.26
Consensus pattern (108 bp):
GAAAAAGATTATCAATATGGACAAGATGAAATTTTATTGAGAGCAAAACTCTAAACAAACAAATC
AATCAAGATAGCAAATTTTGCTAAGATACGAGATGAATAAGAC
Found at i:23022340 original size:43 final size:43
Alignment explanation
Indices: 23022287--23022535 Score: 288
Period size: 43 Copynumber: 5.8 Consensus size: 43
23022277 TTTTAGAAAT
* * *
23022287 AAACGCCGCTATAAATCATGATCTTTAGCGGCGCTTTTTCCAC
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCAC
* *
23022330 AAACACCGCTATAGATCAGGACCTTTAGCGGCGC-TTTTGCAC
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCAC
*
23022372 AAACGCCGCTATAGATCAGGACCTTTAGCGGCACTTTTTCCAC
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCAC
* ** *
23022415 AAACGCCACTATAGATCAAAACATTTAGCGGCGCTTTTTCCAC
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCAC
* * * * *
23022458 AAACACCGCTATAGCT-TGATACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTATAGATCAG-GACCTTTAGCGGCGCTTTTTCCAC
* * * * *
23022501 AAATGCCGCTGTAGAACA-AACCTTTAGCGACGCTT
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTT
23022536 CTCGCAAAAA
Statistics
Matches: 174, Mismatches: 29, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
42 54 0.31
43 120 0.69
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCAC
Found at i:23022430 original size:85 final size:84
Alignment explanation
Indices: 23022287--23022549 Score: 294
Period size: 85 Copynumber: 3.1 Consensus size: 84
23022277 TTTTAGAAAT
* * * * *
23022287 AAACGCCGCTATAAATCATGATCTTTAGCGGCGCTTTTTCCACAAACACCGCTATAGATCAGGAC
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTATAGATCA-AAC
23022352 CTTTAGCGGCGCTTTTGCAC
65 CTTTAGCGGCGCTTTTGCAC
* *
23022372 AAACGCCGCTATAGATCAGGACCTTTAGCGGCACTTTTTCCACAAACGCCACTATAGATCAAAAC
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTATAGATC-AAAC
* *
23022437 ATTTAGCGGCGCTTTTTCCAC
65 CTTTAGCGGCGC-TTTTGCAC
* * * * * * * *
23022458 AAACACCGCTATAGCT-TGATACCTTTAGCGGCGCTTTTCCCACAAATGCCGCTGTAGAACAAAC
1 AAACGCCGCTATAGATCAG-GACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTATAGATCAAAC
* * *
23022522 CTTTAGCGACGCTTCTCGCAA
65 CTTTAGCGGCGCTT-TTGCAC
23022543 AAACGCC
1 AAACGCC
23022550 ACCAAAAATA
Statistics
Matches: 149, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
84 2 0.01
85 91 0.61
86 56 0.38
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (84 bp):
AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTATAGATCAAACC
TTTAGCGGCGCTTTTGCAC
Found at i:23022547 original size:128 final size:128
Alignment explanation
Indices: 23022310--23022551 Score: 328
Period size: 128 Copynumber: 1.9 Consensus size: 128
23022300 AATCATGATC
*
23022310 TTTAGCGGCGCTTTTTCCACAAACACCGCTATAGATCAGGACCTTTAGCGGCGCTTTTGCACAAA
1 TTTAGCGGCGCTTTTTCCACAAACACCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCACAAA
* * * * *
23022375 CGCCGCTATAGATCAGGACCTTTAGCGGCACTTTTTCCACAAACGCCACTATAGATCAAAACA
66 CGCCGCTATAGAACAGAACCTTTAGCGACACTTTCTCCAAAAACGCCACTATAGATCAAAACA
* * *
23022438 TTTAGCGGCGCTTTTTCCACAAACACCGCTATAGCT-TGATACCTTTAGCGGCGCTTTTCCCACA
1 TTTAGCGGCGCTTTTTCCACAAACACCGCTATAGATCAG-GACCTTTAGCGGCGCTTTT-CCACA
* * *
23022502 AATGCCGCTGTAGAACA-AACCTTTAGCGACGC-TTCTCGCAAAAACGCCAC
64 AACGCCGCTATAGAACAGAACCTTTAGCGACACTTTCTC-CAAAAACGCCAC
23022552 CAAAAATATA
Statistics
Matches: 99, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
127 5 0.05
128 76 0.77
129 18 0.18
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (128 bp):
TTTAGCGGCGCTTTTTCCACAAACACCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCACAAA
CGCCGCTATAGAACAGAACCTTTAGCGACACTTTCTCCAAAAACGCCACTATAGATCAAAACA
Found at i:23026916 original size:11 final size:11
Alignment explanation
Indices: 23026896--23026943 Score: 51
Period size: 12 Copynumber: 4.1 Consensus size: 11
23026886 TTTTTACAAT
23026896 TTTTATATTAAA
1 TTTTA-ATTAAA
23026908 TTTTAATTAAA
1 TTTTAATTAAA
*
23026919 TATTTCATATAAA
1 T-TTTAAT-TAAA
*
23026932 TTTTAAATAAA
1 TTTTAATTAAA
23026943 T
1 T
23026944 AATTTTTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
11 12 0.39
12 14 0.45
13 5 0.16
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (11 bp):
TTTTAATTAAA
Found at i:23026932 original size:24 final size:22
Alignment explanation
Indices: 23026904--23026969 Score: 71
Period size: 24 Copynumber: 2.9 Consensus size: 22
23026894 ATTTTTATAT
*
23026904 TAAATTTTAATTAAATATTTCATA
1 TAAATTTTAAATAAATATTT--TA
*
23026928 TAAATTTTAAATAAATAATTTTT
1 TAAATTTTAAATAAAT-ATTTTA
*
23026951 TAAATTTTAAGT-AATATTT
1 TAAATTTTAAATAAATATTT
23026970 AAAAGAATTA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
21 4 0.11
22 3 0.08
23 12 0.32
24 15 0.39
25 4 0.11
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (22 bp):
TAAATTTTAAATAAATATTTTA
Found at i:23027435 original size:7 final size:7
Alignment explanation
Indices: 23027425--23027471 Score: 58
Period size: 7 Copynumber: 6.7 Consensus size: 7
23027415 ATAAAACATA
23027425 AACCCCT
1 AACCCCT
23027432 AACCCCT
1 AACCCCT
*
23027439 AACCCTT
1 AACCCCT
**
23027446 AACCTTT
1 AACCCCT
23027453 AACCCCT
1 AACCCCT
*
23027460 AGCCCCT
1 AACCCCT
23027467 AACCC
1 AACCC
23027472 TTAAACCCCA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.28, C:0.51, G:0.02, T:0.19
Consensus pattern (7 bp):
AACCCCT
Found at i:23027449 original size:21 final size:21
Alignment explanation
Indices: 23027426--23027480 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
23027416 TAAAACATAA
* *
23027426 ACCCCTAACCCCTAACCCTTA
1 ACCCTTAACCCCTAACCCCTA
* *
23027447 ACCTTTAACCCCTAGCCCCTA
1 ACCCTTAACCCCTAACCCCTA
23027468 ACCCTTAAACCCC
1 ACCCTTAA-CCCC
23027481 AGCCTTTAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 24 0.86
22 4 0.14
ACGTcount: A:0.27, C:0.51, G:0.02, T:0.20
Consensus pattern (21 bp):
ACCCTTAACCCCTAACCCCTA
Found at i:23028609 original size:41 final size:40
Alignment explanation
Indices: 23028509--23028720 Score: 275
Period size: 41 Copynumber: 5.2 Consensus size: 40
23028499 TAACTTATTT
* *
23028509 TAAATCCCTAAGCATTAGCGGCGCTTTTTAGAAAACGCCGC
1 TAAATCCCTGAGCATTAGCGGCGCTTTTCA-AAAACGCCGC
* *
23028550 TAAA-CCCCGAGCACTAGCGGCGCTTTCTCAAAAACGCCGC
1 TAAATCCCTGAGCATTAGCGGCGCTTT-TCAAAAACGCCGC
* *
23028590 TATAA-CCCTAAGCATTAGCGGCACTTTTCCAAAAACGCCGC
1 TA-AATCCCTGAGCATTAGCGGCGCTTTT-CAAAAACGCCGC
* *
23028631 TAAATCCCTGAGCATTAGCGGCGCTTTTCCAAAAATGCCAC
1 TAAATCCCTGAGCATTAGCGGCGCTTTT-CAAAAACGCCGC
*
23028672 TAAATCCCTGAGCATTAGCGGCGCTTTATTAAAAACGCCGC
1 TAAATCCCTGAGCATTAGCGGCGCTTT-TCAAAAACGCCGC
23028713 TAAATCCC
1 TAAATCCC
23028721 CGAAAGCTCA
Statistics
Matches: 151, Mismatches: 15, Indels: 10
0.86 0.09 0.06
Matches are distributed among these distances:
40 34 0.23
41 116 0.77
42 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.17, T:0.22
Consensus pattern (40 bp):
TAAATCCCTGAGCATTAGCGGCGCTTTTCAAAAACGCCGC
Found at i:23028822 original size:39 final size:40
Alignment explanation
Indices: 23028778--23028878 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
23028768 TGGAAAACGT
* * * * *
23028778 CGCTAATGCT-TATTTTTAGCGGCGTTTTCCATAATGCGC
1 CGCTAATGCTAGATCTTTAGCAGCGTTTTCCAAAAAGCGC
*
23028817 TGCTAATGCTAGATCTTTAGCAGCGTTTTCCAAAAAGCGC
1 CGCTAATGCTAGATCTTTAGCAGCGTTTTCCAAAAAGCGC
* *
23028857 CGCTAATACTCGATCTTTAGCA
1 CGCTAATGCTAGATCTTTAGCA
23028879 TTGTTTTTTA
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
39 9 0.17
40 43 0.83
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.34
Consensus pattern (40 bp):
CGCTAATGCTAGATCTTTAGCAGCGTTTTCCAAAAAGCGC
Found at i:23028909 original size:12 final size:12
Alignment explanation
Indices: 23028892--23028917 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
23028882 TTTTTTATCC
23028892 AAACGCCGCTAA
1 AAACGCCGCTAA
23028904 AAACGCCGCTAA
1 AAACGCCGCTAA
23028916 AA
1 AA
23028918 GCCTGTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:23030992 original size:30 final size:30
Alignment explanation
Indices: 23030920--23031004 Score: 91
Period size: 29 Copynumber: 2.7 Consensus size: 30
23030910 AAAGGTATGT
* *
23030920 GTATATATATAATATATATGTATAGGGGTTTTG
1 GTAT-TATAT-ATATA-ATATATATGGGTTTTG
*
23030953 TTATT-TATATATAATATATATGGGTTTTG
1 GTATTATATATATAATATATATGGGTTTTG
*
23030982 GTGTTATATATATAATAATATAT
1 GTATTATATATATAAT-ATATAT
23031005 ATGTGTGCAT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
29 17 0.38
30 15 0.33
31 9 0.20
32 1 0.02
33 3 0.07
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.49
Consensus pattern (30 bp):
GTATTATATATATAATATATATGGGTTTTG
Found at i:23031005 original size:33 final size:31
Alignment explanation
Indices: 23030921--23031007 Score: 104
Period size: 33 Copynumber: 2.7 Consensus size: 31
23030911 AAGGTATGTG
*
23030921 TATATATATAATATATATGTATAGGGGTTTTGT
1 TATATATATAATA-ATATATAT-GGGGTTTTGT
* *
23030954 TATTTATAT-ATAATATATATGGGTTTTGGTGT
1 TATATATATAATAATATATATGGGGTTT--TGT
23030986 TATATATATAATAATATATATG
1 TATATATATAATAATATATATG
23031008 TGTGCATGGG
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
30 6 0.13
31 7 0.15
32 14 0.30
33 20 0.43
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (31 bp):
TATATATATAATAATATATATGGGGTTTTGT
Found at i:23031047 original size:34 final size:35
Alignment explanation
Indices: 23030981--23031059 Score: 106
Period size: 34 Copynumber: 2.3 Consensus size: 35
23030971 TATGGGTTTT
* **
23030981 GGTGTTATATATATAATAATATATATGTGTGCATG
1 GGTGTTATATATAAAATAATATATATACGTGCATG
* *
23031016 GGTGTTATATATAAAAT-TTATATTTACGTGCATG
1 GGTGTTATATATAAAATAATATATATACGTGCATG
23031050 GGTGTTATAT
1 GGTGTTATAT
23031060 GTATAATATA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
34 23 0.59
35 16 0.41
ACGTcount: A:0.32, C:0.04, G:0.20, T:0.44
Consensus pattern (35 bp):
GGTGTTATATATAAAATAATATATATACGTGCATG
Found at i:23039850 original size:3 final size:3
Alignment explanation
Indices: 23039842--23039888 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
23039832 TCATGCTTAA
23039842 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
23039889 AAATAAAGAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:23048686 original size:79 final size:79
Alignment explanation
Indices: 23048586--23048744 Score: 273
Period size: 79 Copynumber: 2.0 Consensus size: 79
23048576 GCATTGTTTA
*
23048586 AAACACATCCAAGAGATAAAAAACTATCCTATTTATACTTCACCTTTAGTACCAATTTTGAGGCT
1 AAACACATCCAAGAGATAAAAAACTATCCTATTTATACTTCACCTTTAGTACCAATTTTGAGCCT
23048651 TTTGACACTTCTTG
66 TTTGACACTTCTTG
* * **
23048665 AAACACATCCTAGAGCTAAAAAACTATCCTATTTATACTTCACCTTTAGTACTGATTTTGAGCCT
1 AAACACATCCAAGAGATAAAAAACTATCCTATTTATACTTCACCTTTAGTACCAATTTTGAGCCT
23048730 TTTGACACTTCTTG
66 TTTGACACTTCTTG
23048744 A
1 A
23048745 TGAACCGCAG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
79 75 1.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (79 bp):
AAACACATCCAAGAGATAAAAAACTATCCTATTTATACTTCACCTTTAGTACCAATTTTGAGCCT
TTTGACACTTCTTG
Found at i:23062730 original size:29 final size:29
Alignment explanation
Indices: 23062569--23062735 Score: 133
Period size: 29 Copynumber: 5.8 Consensus size: 29
23062559 TGTGCTAAAT
* * * *
23062569 GATGGTCATAACCGTCCCTTTTCATGTTC
1 GATGGTCGTCACCATCCCTTTTCATATTC
* ** *
23062598 AATGGTCGAAACCATCCCTTTTCATATTT
1 GATGGTCGTCACCATCCCTTTTCATATTC
* *
23062627 GATGGTCGTCACTATCTCTTTTCATAGTTC
1 GATGGTCGTCACCATCCCTTTTCATA-TTC
* * *
23062657 -ATGGTTGTCACCATCCATTTTCATAATC
1 GATGGTCGTCACCATCCCTTTTCATATTC
* * *
23062685 GATAGCCAG--AGCTATCCCTTTTCATATTC
1 GATGGTC-GTCA-CCATCCCTTTTCATATTC
*
23062714 GATGGTCGTCCCCATCCCTTTT
1 GATGGTCGTCACCATCCCTTTT
23062736 AATGGTCGTC
Statistics
Matches: 105, Mismatches: 27, Indels: 12
0.73 0.19 0.08
Matches are distributed among these distances:
28 4 0.04
29 98 0.93
30 3 0.03
ACGTcount: A:0.20, C:0.27, G:0.14, T:0.38
Consensus pattern (29 bp):
GATGGTCGTCACCATCCCTTTTCATATTC
Found at i:23065935 original size:27 final size:27
Alignment explanation
Indices: 23065736--23065933 Score: 254
Period size: 27 Copynumber: 7.3 Consensus size: 27
23065726 GTAAATAACT
23065736 GAAATACCCTCGAAGGGTAAAATGACC
1 GAAATACCCTCGAAGGGTAAAATGACC
* * * *
23065763 AAAATACCCTTGAAGGATAAAATGATC
1 GAAATACCCTCGAAGGGTAAAATGACC
*
23065790 GAAATACCCCCGAAGGGTAAAATGACC
1 GAAATACCCTCGAAGGGTAAAATGACC
* * *
23065817 AAAATACCCTCGACA-GGTACAATGACT
1 GAAATACCCTCGA-AGGGTAAAATGACC
23065844 GAAATACCCTCGAAGGGTAAAATGACC
1 GAAATACCCTCGAAGGGTAAAATGACC
* *
23065871 AAAATACCTTCGAAGGGTAAAATGACC
1 GAAATACCCTCGAAGGGTAAAATGACC
* ** *
23065898 GAAATACCCCCGAAGGGTAAAAAAATC
1 GAAATACCCTCGAAGGGTAAAATGACC
23065925 GAAATACCC
1 GAAATACCC
23065934 CCATAGGATA
Statistics
Matches: 145, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 143 0.99
28 1 0.01
ACGTcount: A:0.43, C:0.22, G:0.19, T:0.16
Consensus pattern (27 bp):
GAAATACCCTCGAAGGGTAAAATGACC
Found at i:23065949 original size:54 final size:54
Alignment explanation
Indices: 23065736--23065919 Score: 280
Period size: 54 Copynumber: 3.4 Consensus size: 54
23065726 GTAAATAACT
* * *
23065736 GAAATACCCTCGAAGGGTAAAATGACCAAAATACCCTTGAAGGATAAAATGATC
1 GAAATACCCCCGAAGGGTAAAATGACCAAAATACCCTCGAAGGATAAAATGACC
* *
23065790 GAAATACCCCCGAAGGGTAAAATGACCAAAATACCCTCGACAGG-TACAATGACT
1 GAAATACCCCCGAAGGGTAAAATGACCAAAATACCCTCGA-AGGATAAAATGACC
* * *
23065844 GAAATACCCTCGAAGGGTAAAATGACCAAAATACCTTCGAAGGGTAAAATGACC
1 GAAATACCCCCGAAGGGTAAAATGACCAAAATACCCTCGAAGGATAAAATGACC
23065898 GAAATACCCCCGAAGGGTAAAA
1 GAAATACCCCCGAAGGGTAAAA
23065920 AAATCGAAAT
Statistics
Matches: 118, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
53 3 0.03
54 112 0.95
55 3 0.03
ACGTcount: A:0.43, C:0.22, G:0.20, T:0.16
Consensus pattern (54 bp):
GAAATACCCCCGAAGGGTAAAATGACCAAAATACCCTCGAAGGATAAAATGACC
Found at i:23066155 original size:26 final size:26
Alignment explanation
Indices: 23066112--23066201 Score: 108
Period size: 26 Copynumber: 3.4 Consensus size: 26
23066102 TGTACTGGTG
* *
23066112 GCTTTGCTACATATACTGTTATTGGCA
1 GCTTTGCTACGT-CACTGTTATTGGCA
* * *
23066139 GCTTTACTACGTCACTGTTACTGGTA
1 GCTTTGCTACGTCACTGTTATTGGCA
* *
23066165 GCTTTGCTATGTCACTATTATTGGCA
1 GCTTTGCTACGTCACTGTTATTGGCA
23066191 GCTTTGCTACG
1 GCTTTGCTACG
23066202 ATATTGGTGT
Statistics
Matches: 52, Mismatches: 11, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
26 42 0.81
27 10 0.19
ACGTcount: A:0.19, C:0.21, G:0.20, T:0.40
Consensus pattern (26 bp):
GCTTTGCTACGTCACTGTTATTGGCA
Found at i:23066192 original size:52 final size:51
Alignment explanation
Indices: 23066100--23066201 Score: 134
Period size: 52 Copynumber: 2.0 Consensus size: 51
23066090 GGGGAAATAT
* *
23066100 ACTGTACTGGTGGCTTTGCTACATATACTGTTATTGGCAGCTTTACTACGTC
1 ACTGTACTGGTAGCTTTGCTA-ATATACTATTATTGGCAGCTTTACTACGTC
* *
23066152 ACTGTTACTGGTAGCTTTGCT-ATGTCACTATTATTGGCAGCTTTGCTACG
1 ACTG-TACTGGTAGCTTTGCTAATAT-ACTATTATTGGCAGCTTTACTACG
23066202 ATATTGGTGT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
51 3 0.07
52 26 0.59
53 15 0.34
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.39
Consensus pattern (51 bp):
ACTGTACTGGTAGCTTTGCTAATATACTATTATTGGCAGCTTTACTACGTC
Found at i:23066347 original size:28 final size:30
Alignment explanation
Indices: 23066306--23066377 Score: 112
Period size: 28 Copynumber: 2.4 Consensus size: 30
23066296 TAATGCATTG
23066306 CACTAATTACTGTATTGGGCTAAGGCCC-C-
1 CACT-ATTACTGTATTGGGCTAAGGCCCACA
*
23066335 CACTGTTACTGTATTGGGCTAAGGCCCACA
1 CACTATTACTGTATTGGGCTAAGGCCCACA
23066365 CACTATTACTGTA
1 CACTATTACTGTA
23066378 GAGGGCTCTG
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
28 22 0.56
29 5 0.13
30 12 0.31
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.29
Consensus pattern (30 bp):
CACTATTACTGTATTGGGCTAAGGCCCACA
Found at i:23068474 original size:14 final size:14
Alignment explanation
Indices: 23068455--23068482 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
23068445 TAAAGTTATA
23068455 TTTAATAATTCATT
1 TTTAATAATTCATT
23068469 TTTAATAATTCATT
1 TTTAATAATTCATT
23068483 AATAAATTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTAATAATTCATT
Found at i:23073529 original size:16 final size:17
Alignment explanation
Indices: 23073510--23073542 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
23073500 ATTCATTCCC
23073510 AAATGGTTT-CATTTCT
1 AAATGGTTTCCATTTCT
*
23073526 AAATGTTTTCCATTTCT
1 AAATGGTTTCCATTTCT
23073543 CCCTTTCTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.24, C:0.15, G:0.09, T:0.52
Consensus pattern (17 bp):
AAATGGTTTCCATTTCT
Found at i:23074417 original size:34 final size:34
Alignment explanation
Indices: 23074371--23074485 Score: 104
Period size: 34 Copynumber: 3.4 Consensus size: 34
23074361 ACTACGTGCA
* * * *
23074371 TTGGTGTAGTGTAGTTATCGTTCTCTCAAGCCAT
1 TTGGTGTGGTGTAATTATCGCTCTATCAAGCCAT
** *
23074405 TTGGTGTGGTGTAATTATCGCTCTATGGAGTCAT
1 TTGGTGTGGTGTAATTATCGCTCTATCAAGCCAT
* * * ** *
23074439 TTGGTGTGGTGTACTTCTTGCTCTATTGAGCTAT
1 TTGGTGTGGTGTAATTATCGCTCTATCAAGCCAT
*
23074473 CTGGTGTGGTGTA
1 TTGGTGTGGTGTA
23074486 GTTACTCGTG
Statistics
Matches: 67, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 67 1.00
ACGTcount: A:0.15, C:0.14, G:0.29, T:0.43
Consensus pattern (34 bp):
TTGGTGTGGTGTAATTATCGCTCTATCAAGCCAT
Found at i:23075597 original size:17 final size:15
Alignment explanation
Indices: 23075565--23075636 Score: 60
Period size: 17 Copynumber: 4.7 Consensus size: 15
23075555 AAAATAAGTG
23075565 ATAAGATAAA-AATAA
1 ATAA-ATAAATAATAA
23075580 ATAAATAACGATAATAA
1 ATAAATAA--ATAATAA
*
23075597 ATGAATAAATAA-AA
1 ATAAATAAATAATAA
23075611 ATAAA-AAATGAACTAA
1 ATAAATAAAT-AA-TAA
*
23075627 ATCAATAAAT
1 ATAAATAAAT
23075637 CAATCAGGAA
Statistics
Matches: 47, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
13 4 0.09
14 12 0.26
15 8 0.17
16 7 0.15
17 16 0.34
ACGTcount: A:0.68, C:0.04, G:0.06, T:0.22
Consensus pattern (15 bp):
ATAAATAAATAATAA
Found at i:23075603 original size:21 final size:19
Alignment explanation
Indices: 23075565--23075628 Score: 65
Period size: 21 Copynumber: 3.1 Consensus size: 19
23075555 AAAATAAGTG
*
23075565 ATAAGATAAAAATAAATAA
1 ATAAGATAAAAATGAATAA
23075584 ATAACGATAATAAATGAATAA
1 ATAA-GATAA-AAATGAATAA
*
23075605 ATAAAAATAAAAAATGAACTAA
1 AT-AAGAT-AAAAATGAA-TAA
23075627 AT
1 AT
23075629 CAATAAATCA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
19 4 0.11
20 5 0.13
21 20 0.53
22 9 0.24
ACGTcount: A:0.69, C:0.03, G:0.06, T:0.22
Consensus pattern (19 bp):
ATAAGATAAAAATGAATAA
Found at i:23075615 original size:18 final size:18
Alignment explanation
Indices: 23075552--23075615 Score: 60
Period size: 18 Copynumber: 3.6 Consensus size: 18
23075542 ACGACAAACC
*
23075552 ATAAAAATAAGTG-ATAA
1 ATAAAAATAAATGAATAA
*
23075569 GATAAAAATAAATAAAT-A
1 -ATAAAAATAAATGAATAA
** *
23075587 ACGATAATAAATGAATAA
1 ATAAAAATAAATGAATAA
23075605 ATAAAAATAAA
1 ATAAAAATAAA
23075616 AAATGAACTA
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
17 12 0.34
18 21 0.60
19 2 0.06
ACGTcount: A:0.69, C:0.02, G:0.08, T:0.22
Consensus pattern (18 bp):
ATAAAAATAAATGAATAA
Found at i:23079893 original size:32 final size:30
Alignment explanation
Indices: 23079819--23079877 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
23079809 TTCAAAATCG
* * *
23079819 GGTTTACAAAAATGTGATATTTAAACAAAT
1 GGTTTACGAAAACGTGATATTTAAAAAAAT
23079849 GGTTTACGAAAACGTGATATTTAAAAAAA
1 GGTTTACGAAAACGTGATATTTAAAAAAA
23079878 CTTGAGTTAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.31
Consensus pattern (30 bp):
GGTTTACGAAAACGTGATATTTAAAAAAAT
Found at i:23080581 original size:22 final size:21
Alignment explanation
Indices: 23080513--23080586 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 21
23080503 CAACAAAGCT
*
23080513 GCCAGTAACCAGAATGGCTAATA
1 GCCA-TAAACAGAATGGCTAA-A
* * *
23080536 GCCATAAACAGGATAGCTTTAA
1 GCCATAAACAGAATGGC-TAAA
*
23080558 GCTATAAACAGAATGGCTACAA
1 GCCATAAACAGAATGGCTA-AA
23080580 GCCATAA
1 GCCATAA
23080587 GTACAGTAAT
Statistics
Matches: 40, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.82
23 6 0.15
ACGTcount: A:0.42, C:0.20, G:0.19, T:0.19
Consensus pattern (21 bp):
GCCATAAACAGAATGGCTAAA
Found at i:23080632 original size:32 final size:31
Alignment explanation
Indices: 23080578--23080679 Score: 114
Period size: 32 Copynumber: 3.2 Consensus size: 31
23080568 GAATGGCTAC
* *
23080578 AAGCCATAAGTACAGTAATATGATTGGCACA
1 AAGCCATAAGTATAGTAATATGATCGGCACA
* *
23080609 AAGCCATAAGTAGTAGTAATATGACCAGCACA
1 AAGCCATAAGTA-TAGTAATATGATCGGCACA
* * * *
23080641 CAGCCATCAGTAATGGTAATATGATCGTCACA
1 AAGCCATAAGT-ATAGTAATATGATCGGCACA
23080673 AAGCCAT
1 AAGCCAT
23080680 CAATATCATC
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
31 12 0.21
32 45 0.78
33 1 0.02
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.22
Consensus pattern (31 bp):
AAGCCATAAGTATAGTAATATGATCGGCACA
Found at i:23080863 original size:24 final size:24
Alignment explanation
Indices: 23080834--23080911 Score: 84
Period size: 24 Copynumber: 3.2 Consensus size: 24
23080824 GCACAGAATT
23080834 AGTCATACAAATCACAGACAAATC
1 AGTCATACAAATCACAGACAAATC
* * *
23080858 AGTCATACCAATCACAGGCAAATT
1 AGTCATACAAATCACAGACAAATC
* ** * *
23080882 ATTCATTTAAATCATAGAAAAATC
1 AGTCATACAAATCACAGACAAATC
23080906 AGTCAT
1 AGTCAT
23080912 TTACACCTCG
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.46, C:0.21, G:0.09, T:0.24
Consensus pattern (24 bp):
AGTCATACAAATCACAGACAAATC
Found at i:23080912 original size:24 final size:24
Alignment explanation
Indices: 23080884--23080963 Score: 72
Period size: 24 Copynumber: 3.3 Consensus size: 24
23080874 GGCAAATTAT
*
23080884 TCATTTAAATCATAGAAAAATCAG
1 TCATTTAAATCATAGAAAAATCAA
* * *
23080908 TCATTTACA-CCTCGAACAAATCAA
1 TCATTTAAATCATAGAA-AAATCAA
* * * *
23080932 TCATTTACATCACAGATATATCAA
1 TCATTTAAATCATAGAAAAATCAA
23080956 TCATTTAA
1 TCATTTAA
23080964 CCCCGATGGG
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
23 5 0.11
24 36 0.82
25 3 0.07
ACGTcount: A:0.44, C:0.20, G:0.05, T:0.31
Consensus pattern (24 bp):
TCATTTAAATCATAGAAAAATCAA
Found at i:23086754 original size:27 final size:27
Alignment explanation
Indices: 23086724--23086776 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
23086714 CTAGATCTTT
* *
23086724 TGGTGAATACCAGCTCGGCAGGTCTAC
1 TGGTGAACACCAGCTCGCCAGGTCTAC
23086751 TGGTGAACACCAGCTCGCCAGGTCTA
1 TGGTGAACACCAGCTCGCCAGGTCTA
23086777 TTAGTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (27 bp):
TGGTGAACACCAGCTCGCCAGGTCTAC
Found at i:23099911 original size:27 final size:27
Alignment explanation
Indices: 23099881--23100192 Score: 414
Period size: 27 Copynumber: 11.6 Consensus size: 27
23099871 AGGGGTATAA
* * *
23099881 CAGTCATTTTACCTTATTG-GGTTATTT
1 CAGTCATTTTACCCT-TCGAGGGTATTT
*
23099908 CAGTCATTTCACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
** * * *
23099935 TGGTTATTTTATCCTTCGGGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
** *
23099962 TGGTCATTTTACCTTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
23099989 C-GATTATTTTACCCTTCGAGGGTATTT
1 CAG-TCATTTTACCCTTCGAGGGTATTT
23100016 CAGTCATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
23100043 CAGTCATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
23100070 CAGTCATTTTACCCATCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
23100097 CAGTCATTTTACCCTTCGGGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
** *
23100124 TGGTCATTTTACCCTTC-AGGGGTATAT
1 CAGTCATTTTACCCTTCGA-GGGTATTT
23100151 CAGTCATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
23100178 CAGTCATTTTACCCT
1 CAGTCATTTTACCCT
23100193 ATGGGATATT
Statistics
Matches: 252, Mismatches: 28, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
26 3 0.01
27 247 0.98
28 2 0.01
ACGTcount: A:0.18, C:0.20, G:0.19, T:0.43
Consensus pattern (27 bp):
CAGTCATTTTACCCTTCGAGGGTATTT
Found at i:23107653 original size:26 final size:27
Alignment explanation
Indices: 23107622--23107691 Score: 126
Period size: 26 Copynumber: 2.7 Consensus size: 27
23107612 CATTCCGTCC
23107622 CACAGCTCGTGTGAGCAAG-CCCATTT
1 CACAGCTCGTGTGAGCAAGACCCATTT
23107648 CACAGCTCGTGTGAGC-AGACCCATTT
1 CACAGCTCGTGTGAGCAAGACCCATTT
23107674 CACAGCTCGTGTGAGCAA
1 CACAGCTCGTGTGAGCAA
23107692 TGATATAAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.05
26 39 0.93
27 1 0.02
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.21
Consensus pattern (27 bp):
CACAGCTCGTGTGAGCAAGACCCATTT
Found at i:23113678 original size:15 final size:16
Alignment explanation
Indices: 23113650--23113680 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
23113640 CTCCATGAAG
23113650 TGTACAATCTCTACAA
1 TGTACAATCTCTACAA
23113666 TGTACAA-CTCTACAA
1 TGTACAATCTCTACAA
23113681 CTTCTGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.39, C:0.26, G:0.06, T:0.29
Consensus pattern (16 bp):
TGTACAATCTCTACAA
Found at i:23116471 original size:22 final size:23
Alignment explanation
Indices: 23116427--23116471 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
23116417 AATTCTACTT
* *
23116427 GTAAAAATGCAGACAAGTTGCCA
1 GTAAAAATGCAGACAAATCGCCA
*
23116450 GTAAAAATGC-GATAAATCGCCA
1 GTAAAAATGCAGACAAATCGCCA
23116472 TTCCCCTCAG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.44, C:0.18, G:0.20, T:0.18
Consensus pattern (23 bp):
GTAAAAATGCAGACAAATCGCCA
Found at i:23123656 original size:20 final size:20
Alignment explanation
Indices: 23123631--23123670 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
23123621 TCAAGCAGCG
23123631 TAAACATAGAATTAAAATAA
1 TAAACATAGAATTAAAATAA
23123651 TAAACATAGAATTAAAATAA
1 TAAACATAGAATTAAAATAA
23123671 ACGATAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.25
Consensus pattern (20 bp):
TAAACATAGAATTAAAATAA
Found at i:23126021 original size:41 final size:41
Alignment explanation
Indices: 23125964--23126047 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
23125954 AACCTAAGTC
23125964 TGCTCACACAAGCTGACAGTCGAAATGTAGCTATAGGATGT
1 TGCTCACACAAGCTGACAGTCGAAATGTAGCTATAGGATGT
23126005 TGCTCACACAAGCTGACAGTCGAAATGTAGCTATAGGATGT
1 TGCTCACACAAGCTGACAGTCGAAATGTAGCTATAGGATGT
23126046 TG
1 TG
23126048 GGCCTCAATC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (41 bp):
TGCTCACACAAGCTGACAGTCGAAATGTAGCTATAGGATGT
Found at i:23132841 original size:485 final size:485
Alignment explanation
Indices: 23131932--23132903 Score: 1917
Period size: 485 Copynumber: 2.0 Consensus size: 485
23131922 TTCAATTATA
23131932 CATGCATGTGAGATGGCAAAGCAAGTAAAGGACCCTTTCCGCAAACTAATGAAGCCAGTCAGCCG
1 CATGCATGTGAGATGGCAAAGCAAGTAAAGGACCCTTTCCGCAAACTAATGAAGCCAGTCAGCCG
23131997 ACCCCAACTAGTAATTTCCATCTGTTTGCAAATTTTCCAGCAATTTACTGGAATCAACGCTATAA
66 ACCCCAACTAGTAATTTCCATCTGTTTGCAAATTTTCCAGCAATTTACTGGAATCAACGCTATAA
23132062 TGTTCTACGCTCCTGTTCTGTTCCAGACGGTGGGATTTGGGAATGATGCTGCATTGCTTTCATCT
131 TGTTCTACGCTCCTGTTCTGTTCCAGACGGTGGGATTTGGGAATGATGCTGCATTGCTTTCATCT
23132127 GTTATTACTGGCCTTGTCAATGTGTTTAGTACTGTAGTTTCAATATATGTAGTAGATAGGGCTGG
196 GTTATTACTGGCCTTGTCAATGTGTTTAGTACTGTAGTTTCAATATATGTAGTAGATAGGGCTGG
23132192 CAGGAGAATTCTGCTACTTGAAGCTTGTGTCCAAATGTTCATTTCTCAGGTCAAGTCTCCATCTT
261 CAGGAGAATTCTGCTACTTGAAGCTTGTGTCCAAATGTTCATTTCTCAGGTCAAGTCTCCATCTT
* *
23132257 ATATTTTTATTTACTTATTATAAATTAATTAATGTTGGTATTTAATGTGTTGCATAAATTACATG
326 ATATTTTTATTCACTTATTATAAATTAATTAATGTTGGTATTTAATGTGTTGCATAAATAACATG
23132322 CAGGTTATTATTGGCATAATCCTTTTCAAAGAATTGAAAACCACAGGTGACAATCTTTCCAAAGG
391 CAGGTTATTATTGGCATAATCCTTTTCAAAGAATTGAAAACCACAGGTGACAATCTTTCCAAAGG
23132387 AGAGGCAATCTTTGTGGTGATCTTGGTGTG
456 AGAGGCAATCTTTGTGGTGATCTTGGTGTG
*
23132417 CATGCATGTGAGATGGCAAAGCAAGTAAAGGACCCTTTCCGCAAACTAATGAAGCCAGTTAGCCG
1 CATGCATGTGAGATGGCAAAGCAAGTAAAGGACCCTTTCCGCAAACTAATGAAGCCAGTCAGCCG
23132482 ACCCCAACTAGTAATTTCCATCTGTTTGCAAATTTTCCAGCAATTTACTGGAATCAACGCTATAA
66 ACCCCAACTAGTAATTTCCATCTGTTTGCAAATTTTCCAGCAATTTACTGGAATCAACGCTATAA
23132547 TGTTCTACGCTCCTGTTCTGTTCCAGACGGTGGGATTTGGGAATGATGCTGCATTGCTTTCATCT
131 TGTTCTACGCTCCTGTTCTGTTCCAGACGGTGGGATTTGGGAATGATGCTGCATTGCTTTCATCT
23132612 GTTATTACTGGCCTTGTCAATGTGTTTAGTACTGTAGTTTCAATATATGTAGTAGATAGGGCTGG
196 GTTATTACTGGCCTTGTCAATGTGTTTAGTACTGTAGTTTCAATATATGTAGTAGATAGGGCTGG
23132677 CAGGAGAATTCTGCTACTTGAAGCTTGTGTCCAAATGTTCATTTCTCAGGTCAAGTCTCCATCTT
261 CAGGAGAATTCTGCTACTTGAAGCTTGTGTCCAAATGTTCATTTCTCAGGTCAAGTCTCCATCTT
23132742 ATATTTTTATTCACTTATTATAAATTAATTAATGTTGGTATTTAATGTGTTGCATAAATAACATG
326 ATATTTTTATTCACTTATTATAAATTAATTAATGTTGGTATTTAATGTGTTGCATAAATAACATG
23132807 CAGGTTATTATTGGCATAATCCTTTTCAAAGAATTGAAAACCACAGGTGACAATCTTTCCAAAGG
391 CAGGTTATTATTGGCATAATCCTTTTCAAAGAATTGAAAACCACAGGTGACAATCTTTCCAAAGG
23132872 AGAGGCAATCTTTGTGGTGATCTTGGTGTG
456 AGAGGCAATCTTTGTGGTGATCTTGGTGTG
23132902 CA
1 CA
23132904 CCTTTGTCAT
Statistics
Matches: 484, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
485 484 1.00
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (485 bp):
CATGCATGTGAGATGGCAAAGCAAGTAAAGGACCCTTTCCGCAAACTAATGAAGCCAGTCAGCCG
ACCCCAACTAGTAATTTCCATCTGTTTGCAAATTTTCCAGCAATTTACTGGAATCAACGCTATAA
TGTTCTACGCTCCTGTTCTGTTCCAGACGGTGGGATTTGGGAATGATGCTGCATTGCTTTCATCT
GTTATTACTGGCCTTGTCAATGTGTTTAGTACTGTAGTTTCAATATATGTAGTAGATAGGGCTGG
CAGGAGAATTCTGCTACTTGAAGCTTGTGTCCAAATGTTCATTTCTCAGGTCAAGTCTCCATCTT
ATATTTTTATTCACTTATTATAAATTAATTAATGTTGGTATTTAATGTGTTGCATAAATAACATG
CAGGTTATTATTGGCATAATCCTTTTCAAAGAATTGAAAACCACAGGTGACAATCTTTCCAAAGG
AGAGGCAATCTTTGTGGTGATCTTGGTGTG
Found at i:23134448 original size:12 final size:13
Alignment explanation
Indices: 23134418--23134450 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
23134408 TGCGGTGGCC
23134418 AAGAAAAAAAGAG
1 AAGAAAAAAAGAG
*
23134431 AGGAAAAAAAGA-
1 AAGAAAAAAAGAG
23134443 AAGAAAAA
1 AAGAAAAA
23134451 GGAAAAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 7 0.39
13 11 0.61
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (13 bp):
AAGAAAAAAAGAG
Found at i:23136802 original size:68 final size:68
Alignment explanation
Indices: 23136684--23136948 Score: 293
Period size: 68 Copynumber: 3.9 Consensus size: 68
23136674 TTATCCTGCA
* * * *
23136684 GACTCCATATGTTGCCATAGTCGAGTTATGGTCTTACACATTGA-AACCCCATGTTCATTGTCCT
1 GACTTCATATGTTGCCATAGTTGAGCTATGGTCTTACACATT-ATAACCCCATGTTTATTGTCCT
*
23136748 GGCG
65 GGTG
* * * * * * **
23136752 CACTTCATATATTGCCATAATTGAGCTATGGTCTTACACATTCTAGCCCCATGTTTAATGTCCCA
1 GACTTCATATGTTGCCATAGTTGAGCTATGGTCTTACACATTATAACCCCATGTTTATTGTCCTG
23136817 GTG
66 GTG
* * *
23136820 GAC-TCTATATGTTGCCATAGCTGAGCTATGGTTTTACAAATTATAACCCCATGTTTATTGTCCT
1 GACTTC-ATATGTTGCCATAGTTGAGCTATGGTCTTACACATTATAACCCCATGTTTATTGTCCT
23136884 GGTG
65 GGTG
* ** * * *
23136888 GACTCCATATGTTGTGATAGTTGAGCTATGGTCTTACATACTGTAACCCC-TGTTTATTGTC
1 GACTTCATATGTTGCCATAGTTGAGCTATGGTCTTACACATTATAACCCCATGTTTATTGTC
23136949 TTGGCAGACT
Statistics
Matches: 162, Mismatches: 32, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
67 13 0.08
68 148 0.91
69 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.36
Consensus pattern (68 bp):
GACTTCATATGTTGCCATAGTTGAGCTATGGTCTTACACATTATAACCCCATGTTTATTGTCCTG
GTG
Found at i:23146199 original size:21 final size:21
Alignment explanation
Indices: 23146175--23146216 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
23146165 AACACCAAAA
23146175 CTCATTCAAGAACATTAATGG
1 CTCATTCAAGAACATTAATGG
23146196 CTCATTCAAGAACATTAATGG
1 CTCATTCAAGAACATTAATGG
23146217 GAAATCCCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (21 bp):
CTCATTCAAGAACATTAATGG
Found at i:23156186 original size:28 final size:28
Alignment explanation
Indices: 23156134--23156213 Score: 115
Period size: 28 Copynumber: 2.9 Consensus size: 28
23156124 TAGTATCAGT
* *
23156134 ACAATGTAGGCCTTAGCCCATTACAATA
1 ACAATGTGGGCCTTAGCCCAATACAATA
* *
23156162 ACAGTGTGGGCCTTAGCCCAATACAGTA
1 ACAATGTGGGCCTTAGCCCAATACAATA
*
23156190 ACAATGTGAGCCTTAGCCCAATAC
1 ACAATGTGGGCCTTAGCCCAATAC
23156214 GGTAATCAGT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.23
Consensus pattern (28 bp):
ACAATGTGGGCCTTAGCCCAATACAATA
Found at i:23156218 original size:28 final size:28
Alignment explanation
Indices: 23156130--23156218 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 28
23156120 TGTATAGTAT
*
23156130 CAGT-ACAATGT-AGGCCTTAGCCCATTA
1 CAGTAACAATGTGA-GCCTTAGCCCAATA
* * *
23156157 CAATAACAGTGTGGGCCTTAGCCCAATA
1 CAGTAACAATGTGAGCCTTAGCCCAATA
23156185 CAGTAACAATGTGAGCCTTAGCCCAATA
1 CAGTAACAATGTGAGCCTTAGCCCAATA
*
23156213 CGGTAA
1 CAGTAA
23156219 TCAGTACAAT
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
27 3 0.06
28 49 0.94
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (28 bp):
CAGTAACAATGTGAGCCTTAGCCCAATA
Found at i:23158256 original size:27 final size:26
Alignment explanation
Indices: 23158212--23158424 Score: 129
Period size: 27 Copynumber: 7.9 Consensus size: 26
23158202 TTTCATCTCC
**
23158212 TAGGGGTATAACGGTCATTTTAGCCAA
1 TAGGGGTATTTCGGTCATTTTA-CCAA
* **
23158239 TAGGGGTATTTCGATCATTTTACCCT
1 TAGGGGTATTTCGGTCATTTTACCAA
* * *
23158265 TTGAGAGTATTTCGGTCATTTTACCCTA
1 TAG-GGGTATTTCGGTCATTTTA-CCAA
** *
23158293 TAGGGGTATTTTAGTCATTTTACCAT
1 TAGGGGTATTTCGGTCATTTTACCAA
* **
23158319 TTGGGAGTATTTCGGTCATTTTACCCT
1 TAGGG-GTATTTCGGTCATTTTACCAA
* * **
23158346 TCGAGGGTATTTCGGTAATTTTACCCT
1 TAG-GGGTATTTCGGTCATTTTACCAA
* * * **
23158373 TCGAGGGTATTTTGGTAATTTTACCCT
1 TAG-GGGTATTTCGGTCATTTTACCAA
* * *
23158400 TCGAGGGTATTTCAGTAATTTTACC
1 TAG-GGGTATTTCGGTCATTTTACC
23158425 CTTTGAGGGT
Statistics
Matches: 157, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
26 10 0.06
27 141 0.90
28 6 0.04
ACGTcount: A:0.21, C:0.16, G:0.21, T:0.41
Consensus pattern (26 bp):
TAGGGGTATTTCGGTCATTTTACCAA
Found at i:23158425 original size:27 final size:27
Alignment explanation
Indices: 23158242--23158665 Score: 483
Period size: 27 Copynumber: 15.7 Consensus size: 27
23158232 TAGCCAATAG
* * *
23158242 GGGTATTTCGATCATTTTACCCTTTGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
* * *
23158269 GAGTATTTCGGTCATTTTACCCTATAG-
1 GGGTATTTCGGTAATTTTACCCT-TCGA
** * * *
23158296 GGGTATTTTAGTCATTTTACCATTTG-
1 GGGTATTTCGGTAATTTTACCCTTCGA
*
23158322 GGAGTATTTCGGTCATTTTACCCTTCGA
1 GG-GTATTTCGGTAATTTTACCCTTCGA
23158350 GGGTATTTCGGTAATTTTACCCTTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
*
23158377 GGGTATTTTGGTAATTTTACCCTTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
* *
23158404 GGGTATTTCAGTAATTTTACCCTTTGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
* * *
23158431 GGGTATTTTGGTAAATTTACCCCTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
* ** *
23158458 TGGTATTTTAGTAATTTTACCCTTCAA
1 GGGTATTTCGGTAATTTTACCCTTCGA
* * **
23158485 GCGTATTTCGATAATTTTATGCTTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
*
23158512 GGGTATTTCGGTAATTTTACCATTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
*
23158539 GGGTATTTCGATAATTTTACCCTTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
* *
23158566 GGGTATTTCAGAAATTTTACCCTTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
* ***
23158593 TGGTATTTTAATAATTTTACCCTTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
* *
23158620 GGGTATTTCGGTAATTTTATCTTTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
*
23158647 GGGTATTTCAGTAATTTTA
1 GGGTATTTCGGTAATTTTA
23158666 GGCCTATTAC
Statistics
Matches: 338, Mismatches: 56, Indels: 6
0.85 0.14 0.01
Matches are distributed among these distances:
26 4 0.01
27 330 0.98
28 4 0.01
ACGTcount: A:0.22, C:0.16, G:0.19, T:0.43
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACCCTTCGA
Found at i:23165271 original size:28 final size:28
Alignment explanation
Indices: 23165235--23165315 Score: 110
Period size: 28 Copynumber: 2.9 Consensus size: 28
23165225 ATTAGTACAG
*
23165235 TGTGAGCCTTACCCCATTACAGTAACAA
1 TGTGAGCCTTACCCCAATACAGTAACAA
* *
23165263 TGTGGGCCTTAGCCCAATACAGTAACAA
1 TGTGAGCCTTACCCCAATACAGTAACAA
*
23165291 TGTGAGCCTT-CACCCAATAAAGTAA
1 TGTGAGCCTTAC-CCCAATACAGTAA
23165316 TTAGTACAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.23
Consensus pattern (28 bp):
TGTGAGCCTTACCCCAATACAGTAACAA
Found at i:23165457 original size:26 final size:26
Alignment explanation
Indices: 23165428--23165498 Score: 88
Period size: 26 Copynumber: 2.7 Consensus size: 26
23165418 CCAATATCAC
*
23165428 AGCAAAGTTACCAATAATAATAACGT
1 AGCAAAGTTACCAATAACAATAACGT
* * *
23165454 AGCAAAGTTGCCACTAACATTAACGT
1 AGCAAAGTTACCAATAACAATAACGT
* *
23165480 AGCAAAGCTACCAGTAACA
1 AGCAAAGTTACCAATAACA
23165499 GTATATGTGG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.45, C:0.21, G:0.14, T:0.20
Consensus pattern (26 bp):
AGCAAAGTTACCAATAACAATAACGT
Found at i:23165712 original size:27 final size:27
Alignment explanation
Indices: 23165691--23165986 Score: 144
Period size: 27 Copynumber: 11.0 Consensus size: 27
23165681 GGGGTATAAC
*
23165691 GGTCAGTTTACCCTATAAGGGTATTTT
1 GGTCAGTTTACCCTTTAAGGGTATTTT
* *
23165718 AGTCATTTTACCCTTTAAGGGTATTTT
1 GGTCAGTTTACCCTTTAAGGGTATTTT
* *
23165745 GGTTAGTTTACCCTTTGAGGGTATTTT
1 GGTCAGTTTACCCTTTAAGGGTATTTT
* * * ** *
23165772 AGTCATTTTACACTTCGAGGGTATTTC
1 GGTCAGTTTACCCTTTAAGGGTATTTT
* * * *
23165799 GATCATTTTACCCTTCAAGGGTATTTC
1 GGTCAGTTTACCCTTTAAGGGTATTTT
* * * *
23165826 GGTAATTTTA-CCTTTCAAGGTTATTTC
1 GGTCAGTTTACCCTTT-AAGGGTATTTT
** * * ** *
23165853 AATAATTTTACCCTTCGAGGGTATTTC
1 GGTCAGTTTACCCTTTAAGGGTATTTT
* * * **
23165880 GATAATTTTACCCTTCGAGGGTATTTT
1 GGTCAGTTTACCCTTTAAGGGTATTTT
* * * ** * *
23165907 GATAATTTTACCCTTCGATGGTATTTC
1 GGTCAGTTTACCCTTTAAGGGTATTTT
* * ** * *
23165934 AGTAAGTTTACCCTTCGAGGATATTTC
1 GGTCAGTTTACCCTTTAAGGGTATTTT
* * * *
23165961 GATAATTTTACCCTTTGAGGGTATTT
1 GGTCAGTTTACCCTTTAAGGGTATTT
23165987 CGGTAATTTT
Statistics
Matches: 227, Mismatches: 40, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
26 4 0.02
27 219 0.96
28 4 0.02
ACGTcount: A:0.22, C:0.16, G:0.18, T:0.44
Consensus pattern (27 bp):
GGTCAGTTTACCCTTTAAGGGTATTTT
Found at i:23165795 original size:81 final size:81
Alignment explanation
Indices: 23165722--23165997 Score: 356
Period size: 81 Copynumber: 3.4 Consensus size: 81
23165712 TATTTTAGTC
* * * * * *
23165722 ATTTTACCCTTTAAGGGTATTTTGGTTAGTTTACCCTTTGAGGGTATTTTAGTCATTTTACACTT
1 ATTTTACCCTTCAAGGGTATTTTGGTAATTTTACCCTTTGAGGGTATTTCAGTAATTTTACCCTT
*
23165787 CGAGGGTATTTCGATC
66 CGAGGGTATTTCGATA
* * * *
23165803 ATTTTACCCTTCAAGGGTATTTCGGTAATTTTA-CCTTTCAAGGTTATTTCAATAATTTTACCCT
1 ATTTTACCCTTCAAGGGTATTTTGGTAATTTTACCCTTT-GAGGGTATTTCAGTAATTTTACCCT
23165867 TCGAGGGTATTTCGATA
65 TCGAGGGTATTTCGATA
* * * * *
23165884 ATTTTACCCTTCGAGGGTATTTTGATAATTTTACCCTTCGATGGTATTTCAGTAAGTTTACCCTT
1 ATTTTACCCTTCAAGGGTATTTTGGTAATTTTACCCTTTGAGGGTATTTCAGTAATTTTACCCTT
*
23165949 CGAGGATATTTCGATA
66 CGAGGGTATTTCGATA
** *
23165965 ATTTTACCCTTTGAGGGTATTTCGGTAATTTTA
1 ATTTTACCCTTCAAGGGTATTTTGGTAATTTTA
23165998 GGCCCATTAC
Statistics
Matches: 169, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
80 5 0.03
81 160 0.95
82 4 0.02
ACGTcount: A:0.22, C:0.16, G:0.17, T:0.44
Consensus pattern (81 bp):
ATTTTACCCTTCAAGGGTATTTTGGTAATTTTACCCTTTGAGGGTATTTCAGTAATTTTACCCTT
CGAGGGTATTTCGATA
Found at i:23165987 original size:27 final size:27
Alignment explanation
Indices: 23165722--23165997 Score: 313
Period size: 27 Copynumber: 10.2 Consensus size: 27
23165712 TATTTTAGTC
** * * *
23165722 ATTTTACCCTTTAAGGGTATTTTGGTT
1 ATTTTACCCTTCGAGGGTATTTCGATA
* * * *
23165749 AGTTTACCCTTTGAGGGTATTT-TAGTC
1 ATTTTACCCTTCGAGGGTATTTCGA-TA
* *
23165776 ATTTTACACTTCGAGGGTATTTCGATC
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
23165803 ATTTTACCCTTCAAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* * * *
23165830 ATTTTACCTTTCAAGGTTATTTCAATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
23165857 ATTTTACCCTTCGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
23165884 ATTTTACCCTTCGAGGGTATTTTGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
23165911 ATTTTACCCTTCGATGGTATTTC-AGTA
1 ATTTTACCCTTCGAGGGTATTTCGA-TA
* *
23165938 AGTTTACCCTTCGAGGATATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
23165965 ATTTTACCCTTTGAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
23165992 ATTTTA
1 ATTTTA
23165998 GGCCCATTAC
Statistics
Matches: 214, Mismatches: 31, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.00
27 211 0.99
28 2 0.01
ACGTcount: A:0.22, C:0.16, G:0.17, T:0.44
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGATA
Found at i:23170537 original size:14 final size:14
Alignment explanation
Indices: 23170518--23170545 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
23170508 ATAGGTTCAG
23170518 GAATCTCATGAATC
1 GAATCTCATGAATC
23170532 GAATCTCATGAATC
1 GAATCTCATGAATC
23170546 TATATATTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (14 bp):
GAATCTCATGAATC
Found at i:23177273 original size:18 final size:17
Alignment explanation
Indices: 23177242--23177275 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
23177232 CAAAAGTAAA
23177242 ATAAAAAAACAAAAATT
1 ATAAAAAAACAAAAATT
*
23177259 ATAATAAAAATAAAAAT
1 ATAA-AAAAACAAAAAT
23177276 GGCTAAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (17 bp):
ATAAAAAAACAAAAATT
Found at i:23179574 original size:23 final size:24
Alignment explanation
Indices: 23179546--23179616 Score: 92
Period size: 23 Copynumber: 2.9 Consensus size: 24
23179536 CGAGCTAAAG
23179546 AACGGTAAGCTC-TATCGAGCTGA-
1 AACGGTAAGCTCATA-CGAGCTGAT
*
23179569 AACGGTAAGCTCATAAGAGCTGAT
1 AACGGTAAGCTCATACGAGCTGAT
23179593 ATAGCGGTAAGCTCATACGAGCTG
1 A-A-CGGTAAGCTCATACGAGCTG
23179617 TGGTGAGTCT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
23 19 0.45
24 3 0.07
25 1 0.02
26 19 0.45
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.21
Consensus pattern (24 bp):
AACGGTAAGCTCATACGAGCTGAT
Found at i:23182582 original size:23 final size:23
Alignment explanation
Indices: 23182553--23182598 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
23182543 CTTTCTTCTT
*
23182553 GTAGTAATTTTCGGGGTATTACA
1 GTAGTAATTTTCGGGATATTACA
*
23182576 GTAGTAATTTTTGGGATATTACA
1 GTAGTAATTTTCGGGATATTACA
23182599 CATAATCTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.28, C:0.07, G:0.24, T:0.41
Consensus pattern (23 bp):
GTAGTAATTTTCGGGATATTACA
Found at i:23191334 original size:6 final size:6
Alignment explanation
Indices: 23191280--23191336 Score: 53
Period size: 6 Copynumber: 9.2 Consensus size: 6
23191270 AAAAAATTCC
* * *
23191280 TATTAT TATTAT TATTATT TATTTT TACTATTT TA-TTT TATTTT CATTTT
1 TATTTT TATTTT TATT-TT TATTTT TA-T-TTT TATTTT TATTTT TATTTT
23191330 TATTTT T
1 TATTTT T
23191337 GCAGGAAAAC
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
5 5 0.11
6 28 0.64
7 6 0.14
8 5 0.11
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.74
Consensus pattern (6 bp):
TATTTT
Found at i:23194841 original size:8 final size:8
Alignment explanation
Indices: 23194828--23194852 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
23194818 CACTAGAGAT
23194828 CAGTGTTA
1 CAGTGTTA
23194836 CAGTGTTA
1 CAGTGTTA
23194844 CAGTGTTA
1 CAGTGTTA
23194852 C
1 C
23194853 GATGACTCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (8 bp):
CAGTGTTA
Found at i:23210395 original size:6 final size:6
Alignment explanation
Indices: 23210386--23210431 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
23210376 TTATTATCAT
* *
23210386 ATTATC ATTA-C ATTA-C TATTATT ATTATC ATTATT ATTATC ATTAT
1 ATTATC ATTATC ATTATC -ATTATC ATTATC ATTATC ATTATC ATTAT
23210432 TGTTGTTTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
5 6 0.18
6 28 0.82
ACGTcount: A:0.35, C:0.11, G:0.00, T:0.54
Consensus pattern (6 bp):
ATTATC
Found at i:23210418 original size:12 final size:12
Alignment explanation
Indices: 23210385--23210432 Score: 64
Period size: 12 Copynumber: 4.1 Consensus size: 12
23210375 TTTATTATCA
23210385 TATTATCATTA-
1 TATTATCATTAT
*
23210396 CATTA-CTATTAT
1 TATTATC-ATTAT
23210408 TATTATCATTAT
1 TATTATCATTAT
23210420 TATTATCATTAT
1 TATTATCATTAT
23210432 T
1 T
23210433 GTTGTTTATA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
10 1 0.03
11 8 0.25
12 22 0.69
13 1 0.03
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.56
Consensus pattern (12 bp):
TATTATCATTAT
Found at i:23217637 original size:13 final size:13
Alignment explanation
Indices: 23217615--23217647 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
23217605 TTACCGCACG
*
23217615 CAAGGGTAGATCT
1 CAAGGTTAGATCT
23217628 CAAGGTTAGATCT
1 CAAGGTTAGATCT
23217641 CAAGGTT
1 CAAGGTT
23217648 TCAAAAAGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.27
Consensus pattern (13 bp):
CAAGGTTAGATCT
Found at i:23219460 original size:43 final size:43
Alignment explanation
Indices: 23219399--23219483 Score: 170
Period size: 43 Copynumber: 2.0 Consensus size: 43
23219389 AGAAAAGAGA
23219399 GCCATCATTCTTATCTATATTTTTATTTGTATTTTTATCTATT
1 GCCATCATTCTTATCTATATTTTTATTTGTATTTTTATCTATT
23219442 GCCATCATTCTTATCTATATTTTTATTTGTATTTTTATCTAT
1 GCCATCATTCTTATCTATATTTTTATTTGTATTTTTATCTAT
23219484 ATTTACATAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.21, C:0.14, G:0.05, T:0.60
Consensus pattern (43 bp):
GCCATCATTCTTATCTATATTTTTATTTGTATTTTTATCTATT
Found at i:23219486 original size:12 final size:12
Alignment explanation
Indices: 23219409--23219487 Score: 59
Period size: 12 Copynumber: 6.0 Consensus size: 12
23219399 GCCATCATTC
23219409 TTATCTATATTT
1 TTATCTATATTT
* *
23219421 TTATTTGTATTT
1 TTATCTATATTT
23219433 TTATCTATTGCCATCATT
1 TTATCTA-T---AT--TT
23219451 CTTATCTATATTT
1 -TTATCTATATTT
* *
23219464 TTATTTGTATTT
1 TTATCTATATTT
23219476 TTATCTATATTT
1 TTATCTATATTT
23219488 ACATATAATT
Statistics
Matches: 52, Mismatches: 8, Indels: 14
0.70 0.11 0.19
Matches are distributed among these distances:
12 35 0.67
13 3 0.06
15 2 0.04
16 2 0.04
18 3 0.06
19 7 0.13
ACGTcount: A:0.22, C:0.10, G:0.04, T:0.65
Consensus pattern (12 bp):
TTATCTATATTT
Found at i:23228392 original size:18 final size:18
Alignment explanation
Indices: 23228369--23228403 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
23228359 ACGATGTGCC
23228369 AAACTATTTTCATGCTTG
1 AAACTATTTTCATGCTTG
*
23228387 AAACTATTTTGATGCTT
1 AAACTATTTTCATGCTT
23228404 CCTGTTCTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.14, G:0.11, T:0.46
Consensus pattern (18 bp):
AAACTATTTTCATGCTTG
Found at i:23233515 original size:11 final size:11
Alignment explanation
Indices: 23233499--23233524 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
23233489 CTTCATTCAT
23233499 CATCCCTCAAG
1 CATCCCTCAAG
23233510 CATCCCTCAAG
1 CATCCCTCAAG
23233521 CATC
1 CATC
23233525 ATTCTCTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.46, G:0.08, T:0.19
Consensus pattern (11 bp):
CATCCCTCAAG
Found at i:23246905 original size:5 final size:5
Alignment explanation
Indices: 23246895--23246955 Score: 52
Period size: 5 Copynumber: 12.2 Consensus size: 5
23246885 TACTCCACTT
* * * * *
23246895 TGTTC TGTTC TGTTC TGTTC TGCTC TGTTT TGTATC -ATTC AGTTT TGTTC
1 TGTTC TGTTC TGTTC TGTTC TGTTC TGTTC TGT-TC TGTTC TGTTC TGTTC
*
23246945 TGTTT TGTTC T
1 TGTTC TGTTC T
23246956 ACTCTATAAC
Statistics
Matches: 43, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
4 2 0.05
5 40 0.93
6 1 0.02
ACGTcount: A:0.05, C:0.16, G:0.18, T:0.61
Consensus pattern (5 bp):
TGTTC
Found at i:23246944 original size:35 final size:35
Alignment explanation
Indices: 23246905--23246980 Score: 89
Period size: 35 Copynumber: 2.2 Consensus size: 35
23246895 TGTTCTGTTC
** * * *
23246905 TGTTCTGTTCTGCTCTGTTTTGTATCATTCAGTTT
1 TGTTCTGTTCTGCTCTACTCTATAACATTCAGTTT
* *
23246940 TGTTCTGTTTTGTTCTACTCTATAACATTCAGTTT
1 TGTTCTGTTCTGCTCTACTCTATAACATTCAGTTT
23246975 TGTTCT
1 TGTTCT
23246981 ACTCCATTAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.12, C:0.17, G:0.14, T:0.57
Consensus pattern (35 bp):
TGTTCTGTTCTGCTCTACTCTATAACATTCAGTTT
Found at i:23247677 original size:15 final size:15
Alignment explanation
Indices: 23247641--23247679 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
23247631 TAAACATACA
23247641 TGTTCTGTTTTGCTT
1 TGTTCTGTTTTGCTT
*
23247656 TGCTCTGTTTTG-TT
1 TGTTCTGTTTTGCTT
23247670 CTGTTCTGTT
1 -TGTTCTGTT
23247680 CAGGTCCACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 2 0.10
15 19 0.90
ACGTcount: A:0.00, C:0.15, G:0.21, T:0.64
Consensus pattern (15 bp):
TGTTCTGTTTTGCTT
Found at i:23248618 original size:733 final size:732
Alignment explanation
Indices: 23246953--23255042 Score: 7839
Period size: 733 Copynumber: 11.0 Consensus size: 732
23246943 TCTGTTTTGT
* * * * * * * *
23246953 TCTACTCTATAACATTCAGTTTTGTTCTACTCCATTATTTTTTTTCTTTGTTCTATTGTACTACC
1 TCTACTCTATACCATTCGGTTTTGTTATGCTCTATTA-TGTTTTGCTTTGTTCTGTTGTACTACC
* * ** **
23247018 TTTGATTAAATCTCTGTTATACTCAAGAGTTGTCTTTACTGGTGCTACAACTGCTCTTAAGTTAT
65 TTTGATTAAATCTCTGTGATACTCTAGAGTTGTCCGTACTGGTTATACAACTGCTCTTAAGTTAT
* * * * * *
23247083 TTGCGTTACTACGACTTATATAGTATTCCCTTCTTATTTGTATTTGAGCCTAGTTATACGGGGTG
130 TTGCGTTACTACGAGTTATATAGTATGCTCTACTTATTTGTATTTGAGCCTGGTTATACGCGGTG
* * *
23247148 -TTGGGTAACT-ATCCCTTTGTCTTACCTTCATCTGTTCAAGAAAACATCTGATTTATGATCCAA
195 CTT-GGTAACTCA-CCCTTTGTCTTACCTTCATCTGTTCAGGAAAACATCTGATTTAGGATCGAA
* * * * * *
23247211 CGGCGTACGAGAGGTCGGATTATTTTACACTAAAATAATTACGAATTGATCTTTAGGGTTTGAAA
258 CGGCGTACGAGAGCTCAGATTGTTTTACACTAAAATAACTACGAATTGATCTTTTGGGTTTGTAA
* * *
23247276 ATTGTCTTGGATTTGCCTTGCTTTCCTTTTGATAATCTCGTTCGTAT-AGATAAATTTCTAACAC
323 ATTGTCTTGGATTTGCCTTGCTTTCCTTTTCATAATCTCGTCCGTATAAG-TCAATTTCTAACAC
* * * * *
23247340 AAAACTATAAAATTACCTAAATCGAGAAAAATGAATTTCTAGTTTTCAAAATTAAAATCCC-AAA
387 GAAACTACAAAATCACCTAAATCGACAAAAATGAATTTCTGGTTTTCAAAATTAAAATCCCGAAA
** *
23247404 AGGAAATCAGTTTTCAATGCATTATTGTAACTCGTCCAAGTTTGGCTTAAACTTTCAGGTCGGAT
452 A-GAAATCAGTTTTCAATGCATTGGTGTAACTCGTCCAAGTTTGGCTTAAACTTCCAGGTCGG-T
* * **
23247469 TTGGTGTGTTACATTTAGTGGCATCAACCCGGGATGACTTTCTCAGTGTGTTTTGGATGGATGAT
515 TTGGGGTGTTACATTTAGTGGTATCAA-CCGGGATGACTTTCTTGGTGTGTTTTGGATGGATGA-
* **** * * * * * * *
23247534 TTTC-AAACAAAACTATATTTTTATGTGTATCAGAGTTTGGAAAGACTGTATCTGATAAATCTAC
578 GTTCGGGGGAGAACTCTATTTTT-TGTGTAACGGAGTTTGGGAAGACTGTTTCTGATAAATCTGC
* * * * **
23247598 ATTCTGATCTATTTGAAAAATACTGCAACTGCATAAACATACATGTTCTGTTTTGCTTTGCTCTG
642 ATTCTGATCTGTTTGAAAAATACTGCATCTGCATAAACATACATGTTCTGTTCTGCTCTGCTCCA
* *
23247663 TTTTGTTCTGTTCTGTTCAGGTCCAC
707 TTTTGTTCTGTTCTGTTCAGTTCTAC
* ** * * * * * *
23247689 TCTGCTCTATACCATTTTGTTTTGTTCTTCTATATTCTTTTTTGC-CTGTTCTGTTGTACTACCT
1 TCTACTCTATACCATTCGGTTTTGTTATGCTCTATTATGTTTTGCTTTGTTCTGTTGTACTACCT
* * * *
23247753 TTGATTAAGTCTCTGTGATACTCTAGAGTTGTTCGTATTGGTTATGCAACTGCTCTTAAGTTATT
66 TTGATTAAATCTCTGTGATACTCTAGAGTTGTCCGTACTGGTTATACAACTGCTCTTAAGTTATT
* * *
23247818 TGTGTTACTACGAGTTATATAGTATGCTCTACTTATTTGTATTTGAACCTGGTTATACACGGTGC
131 TGCGTTACTACGAGTTATATAGTATGCTCTACTTATTTGTATTTGAGCCTGGTTATACGCGGTGC
* *
23247883 TTGGTAACTCACCCTTTGTCTTACCTTCATCTGTTCAGGAAAACATCTGATTTAGGATCCAACAG
196 TTGGTAACTCACCCTTTGTCTTACCTTCATCTGTTCAGGAAAACATCTGATTTAGGATCGAACGG
* * * *
23247948 CGTACGAGAGCTCAGATTGTTTTACATTAAAATAACTGCGAATTGATCTTTTGAGTTTCTAAATT
261 CGTACGAGAGCTCAGATTGTTTTACACTAAAATAACTACGAATTGATCTTTTGGGTTTGTAAATT
* * * * *
23248013 TTCTTGGATTTGCCTTGCTTTCCTTTTCATAATCTCATCTGTATAAATAAATTTCTAACACGAAA
326 GTCTTGGATTTGCCTTGCTTTCCTTTTCATAATCTCGTCCGTATAAGTCAATTTCTAACACGAAA
*
23248078 CTAAAAAATCACCTAAATCGACAAAAACT-AATTTCTGGTTTTCAAAATTAAAATCCCGAAAA-A
391 CTACAAAATCACCTAAATCGACAAAAA-TGAATTTCTGGTTTTCAAAATTAAAATCCCGAAAAGA
* *
23248141 AATTAGTTTTCAATGCATTGGTGTAACTCGTTCAAGTTTGGCTTAAACTTCCAGGTCAGGTTTGG
455 AATCAGTTTTCAATGCATTGGTGTAACTCGTCCAAGTTTGGCTTAAACTTCCAGGTC-GGTTTGG
* * * * * *
23248206 GGTGTTAGATGTAGTGGTATAAACTCGAGATGACTTTTTTGGTGTGCTTTGGATGGATGAGTTCG
519 GGTGTTACATTTAGTGGTATCAAC-CGGGATGACTTTCTTGGTGTGTTTTGGATGGATGAGTTCG
* ** *
23248271 GAGGAGGGCTCTATTTTTTAGTGTAACGGAGTTTGGGAAGACTGTTTCTGATAAATCTACATTCT
583 GGGGAGAACTCTATTTTTT-GTGTAACGGAGTTTGGGAAGACTGTTTCTGATAAATCTGCATTCT
* * * * * *
23248336 GATCTATTTGAAAAGTATTGCATTTGCATATACATACATGTTCTGTTCTGCTCTGCTCCATTTTA
647 GATCTGTTTGAAAAATACTGCATCTGCATAAACATACATGTTCTGTTCTGCTCTGCTCCATTTTG
*
23248401 TTCTGTTCTGTTCAGTTCTGC
712 TTCTGTTCTGTTCAGTTCTAC
* * * * * *
23248422 TCTACTTTGTACCATTCGATTTTGTTAAGCTCTATTATGTTTTGCTTTATTCTGTTGAACTACCT
1 TCTACTCTATACCATTCGGTTTTGTTATGCTCTATTATGTTTTGCTTTGTTCTGTTGTACTACCT
* * * * *
23248487 TTGATTAAAGCTCTGTGACACTCTAGTGTTATCCGTACTGGTTATAC-ACTACTCTTAAGTTATT
66 TTGATTAAATCTCTGTGATACTCTAGAGTTGTCCGTACTGGTTATACAACTGCTCTTAAGTTATT
* * ** * * ** *
23248551 TGCATTACTACGAGTTACATAGTGCGTTCTACTTATTTGTATTTGAGCTTGGTTATATACAGTGC
131 TGCGTTACTACGAGTTATATAGTATGCTCTACTTATTTGTATTTGAGCCTGGTTATACGCGGTGC
* * * * * * * *
23248616 TTGGTAACTCACCCTTTTTCTTAACTTCATCTATCCAAGAAAACATTTGATCTAGGATCAAACGG
196 TTGGTAACTCACCCTTTGTCTTACCTTCATCTGTTCAGGAAAACATCTGATTTAGGATCGAACGG
** * * * *
23248681 CACATGGGAGCTTAGATTGTTTTACAGTAAAATAACTACGAATTGATCTTTTGGGTTTGTAAATT
261 CGTACGAGAGCTCAGATTGTTTTACACTAAAATAACTACGAATTGATCTTTTGGGTTTGTAAATT
* * * * * *
23248746 GTCTTGGATTTGCCTTGCTGTCTTTTTGATAAAT-TCATCCGTATCAGTCAATTTCTAATACGAA
326 GTCTTGGATTTGCCTTGCTTTCCTTTTCAT-AATCTCGTCCGTATAAGTCAATTTCTAACACGAA
* * * *
23248810 ACTACAAAATCA-CAAAATCAACAAAAATGAATTTCTTGTTTTCAAAATTAAAATACC-AACAAG
390 ACTACAAAATCACCTAAATCGACAAAAATGAATTTCTGGTTTTCAAAATTAAAATCCCGAA-AAG
* ** * *
23248873 AAATCAATTCACAATGCATTGGTGTAACTCGTCCAAGTTTGGCTTAAACTTCTAGGTCGGGTTTA
454 AAATCAGTTTTCAATGCATTGGTGTAACTCGTCCAAGTTTGGCTTAAACTTCCAGGTC-GGTTTG
* * * * *
23248938 GGGTGTTAAATTTAGTGGTATCAACCTGGGATAACTTTTTTGGTGTGCTTTGGATGGATGAGTTT
518 GGGTGTTACATTTAGTGGTATCAACC-GGGATGACTTTCTTGGTGTGTTTTGGATGGATGAGTTC
* * * * **
23249003 GGGGGAGAACTCTAATTTTGTGTGTAACAGAGTTT-GGATAGACTATTTTTGATAAATCTGTGTT
582 GGGGGAGAACTCT-ATTTTTTGTGTAACGGAGTTTGGGA-AGACTGTTTCTGATAAATCTGCATT
* * * *
23249067 CTGATCTGTTTGAAAAATACTGCATCTGCAGAAACCTACATGTTCTATTCTGCTCTGCTCCGTTT
645 CTGATCTGTTTGAAAAATACTGCATCTGCATAAACATACATGTTCTGTTCTGCTCTGCTCCATTT
* * *
23249132 TGTTCTATTCTGTTCAATTCTGC
710 TGTTCTGTTCTGTTCAGTTCTAC
* * * * * * *
23249155 TC--CGTCTTGTATCATTCGGTTTTGTTATGTTCTGTTCA-GTTCTGCTCTGCTCTGTACCAT-T
1 TCTAC-TC-TATACCATTCGGTTTTGTTATGCTCTATT-ATGTTTTGCTTTGTTCTGT----TGT
* ** * * * * *
23249216 CCATTTTCTTCTGCTATATTATGTTATGCTTTGTTATGTTGTACTACCTTTGA-TTAAATCTCTG
59 --ACTACCTT-TG----ATTA---AAT-CTCTG---TG--ATACT--C-TAGAGTT--GTC-C-G
* * * * * * * *
23249280 TAATACTCTAGAGTTGTCCGTACTAGTTATACAACTGCTCTTAATTTATTTGTGTTACTACGAGT
101 ---TA--CT-G-GTTATAC-AACT-GCTCT-TAA--G---TT-A--T-TTG-CGTTACTACGAGT
* * ** * *
23249345 TGTATAGTATGCTCTGCTTATTTGCCTTTGAGCCTGGTTATACGCGCTGCTTGG-AACTCACACT
146 TATATAGTATGCTCTACTTATTTGTATTTGAGCCTGGTTATACGCGGTGCTTGGTAACTCACCCT
* * * *
23249409 TTTTCTTACCTTCATCTGTTAAGGAAAACATCTGATTTAGGATAGGACGGCGTGA-GAGAGCTCA
211 TTGTCTTACCTTCATCTGTTCAGGAAAACATCTGATTTAGGATCGAACGGCGT-ACGAGAGCTCA
* * * * *
23249473 GATTGTTTTACACTGAAATAACTATGAATTGATCTTTTAGGTTTGTAAATTGTCTTAGATTTTCC
275 GATTGTTTTACACTAAAATAACTACGAATTGATCTTTTGGGTTTGTAAATTGTCTTGGATTTGCC
* * * *
23249538 TTGCTTTCCTTTT-A-AATTCTCGTCCGTATTAGTCAATTTCTAAAATGAAACTTCAAAATCACC
340 TTGCTTTCCTTTTCATAA-TCTCGTCCGTATAAGTCAATTTCTAACACGAAACTACAAAATCACC
* * * * * *
23249601 TAAATCTACAAAAATGAATTTTTGGATTTCAAATTTAAAATCCTGAAAAGAAATCAATTTTCAAT
404 TAAATCGACAAAAATGAATTTCTGGTTTTCAAAATTAAAATCCCGAAAAGAAATCAGTTTTCAAT
* * * ** * **
23249666 GCATTTGTGTAACTCATCCATGTTCAGCTTAAACTTACAGGTCGAGTTTGCAGTGTTACATTTAG
469 GCATTGGTGTAACTCGTCCAAGTTTGGCTTAAACTTCCAGGTCG-GTTTGGGGTGTTACATTTAG
* * *
23249731 TGGTATCAACTTGGGATGACATTT-TTGGTGTGTTTTGAATAGATGAGTTCGGGGGAGAACTCTA
533 TGGTATCAAC-CGGGATGAC-TTTCTTGGTGTGTTTTGGATGGATGAGTTCGGGGGAGAACTCTA
* * * * * *
23249795 TTCTTATGCGTAACGGAGTTT-GGAAGGACTGCTTCTAATAAATCTGCATTTTGTTCTGTTTGAA
596 TT-TTTTGTGTAACGGAGTTTGGGAA-GACTGTTTCTGATAAATCTGCATTCTGATCTGTTTG--
* * * * * * *
23249859 AAAAAAACTACATTTCCATAAACATACATGTTTTGTTCCGCTTTCCT-CTGTACCATTCTGTTCT
657 AAAAATACTGCATCTGCATAAACATACATGTTCTGTTCTGC--T-CTGC--T-CCATTTTGTTCT
* * *
23249923 ATTCTGTTTACTTCTAC
716 GTTCTGTTCAGTTCTAC
* * * * *
23249940 T-TCACTCTATACCATTCGGCTTTGTTCTGCTCTCTTATGTTTTGCTTTGTTTTGTTCTACTACC
1 TCT-ACTCTATACCATTCGGTTTTGTTATGCTCTATTATGTTTTGCTTTGTTCTGTTGTACTACC
* * * *
23250004 TTTGATTAAATTTCTGTGATTACTCCAGAGTTGTCCGTACTGGTTATACAACTGTTTTTAAGTTA
65 TTTGATTAAATCTCTGTGA-TACTCTAGAGTTGTCCGTACTGGTTATACAACTGCTCTTAAGTTA
* * * * *
23250069 TTTGCGTTATTACGAGTTATATAGTATGCTCTGCTTACTTGTATTTAAG-C---TTAGACGCGGT
129 TTTGCGTTACTACGAGTTATATAGTATGCTCTACTTATTTGTATTTGAGCCTGGTTATACGCGGT
* * * * * * * *
23250130 GCCTGGTAACTCACCTTTTGTCCTCCCATT-ATCTGTTCAGAAAAACAACTGATTTAGGATTGGA
194 GCTTGGTAACTCACCCTTTGTCTTACC-TTCATCTGTTCAGGAAAACATCTGATTTAGGATCGAA
* * * * *
23250194 CGGCATA-GAGAGCTCAGATTTTTTTACACTGAAATAATTAC-AGATTGATCTTTTGAGTTTGTA
258 CGGCGTACGAGAGCTCAGATTGTTTTACACTAAAATAACTACGA-ATTGATCTTTTGGGTTTGTA
** *
23250257 AATTGTCTTGGATTTGCCTTGCTTTCCTTTTCATAATCTCAACCGTATTAGTCAATTTCTAACAC
322 AATTGTCTTGGATTTGCCTTGCTTTCCTTTTCATAATCTCGTCCGTATAAGTCAATTTCTAACAC
* * * * *
23250322 GAAACTACAAAATCACCTAAATCAAAAAAAATGGATTTGTTGTTTTCAAAATTAAAATCCCGAAA
387 GAAACTACAAAATCACCTAAATCGACAAAAATGAATTTCTGGTTTTCAAAATTAAAATCCCGAAA
* * *
23250387 AGAAATCAGTTTTCAATGCATTGGTGAAACTCGTCCAAGTTCGACTTAAACTTCCAGGTCGAGTT
452 AGAAATCAGTTTTCAATGCATTGGTGTAACTCGTCCAAGTTTGGCTTAAACTTCCAGGTCG-GTT
** *
23250452 TTAGGTGTTACATTTAGTGGTATCAACCTGGGATGACTTTCTTGGTGTGTTTTGGATGGATGGGT
516 TGGGGTGTTACATTTAGTGGTATCAACC-GGGATGACTTTCTTGGTGTGTTTTGGATGGATGAGT
* * *** * * * * * * *
23250517 TTGGGGGAGAGCAAAATTTTGTGTGTAACGGAGATTGGGAAGATTGTTCCTAATACATCTGCGTT
580 TCGGGGGAGAACTCTATTTTTTGTGTAACGGAGTTTGGGAAGACTGTTTCTGATAAATCTGCATT
* * * * *
23250582 ATGATCTGCTTGACAAATACTGCCTCTGCATAAACATACATGTTTTGTTCTGCTCTGCTCCATTT
645 CTGATCTGTTTGAAAAATACTGCATCTGCATAAACATACATGTTCTGTTCTGCTCTGCTCCATTT
* * *
23250647 TCTTCTGTTTTGTTCAATTCTAC
710 TGTTCTGTTCTGTTCAGTTCTAC
* * * * *
23250670 TCTCCTCTGTACCATTCGGTTTTATTCTGCTCTATTATGTTTTGCTTTGTTCTGTTGCACTACCT
1 TCTACTCTATACCATTCGGTTTTGTTATGCTCTATTATGTTTTGCTTTGTTCTGTTGTACTACCT
* * * ** *
23250735 TTGATTAACTTTCTGTGATACTCTAGAGTTGTCTGTACTGGTTACGCAACTGCTTTTAAGTTATT
66 TTGATTAAATCTCTGTGATACTCTAGAGTTGTCCGTACTGGTTATACAACTGCTCTTAAGTTATT
* * * * **
23250800 TACGTTATTACGAGTTATATAGTATGCTCTATTTATTTGTATTTAAGCCTAATTATACGCGGTGC
131 TGCGTTACTACGAGTTATATAGTATGCTCTACTTATTTGTATTTGAGCCTGGTTATACGCGGTGC
** * * * * *
23250865 TTGGTAACTCACGTTTTGTCTTACCTTCATCTGTTTAGGAAAGCTTTTGATTTAGGATCAAACGG
196 TTGGTAACTCACCCTTTGTCTTACCTTCATCTGTTCAGGAAAACATCTGATTTAGGATCGAACGG
* * * ***
23250930 TGTACGAGAGCTC-GAATTGTTTCACACTTAAATAACTGTAAATTGATCTTTTGGGTTT-TAAAT
261 CGTACGAGAGCTCAG-ATTGTTTTACACTAAAATAACTACGAATTGATCTTTTGGGTTTGTAAAT
* * * **
23250993 TGTCTTAGATTTTCCTTGCTTTCCTTTTCATAATCTCGTCCGAATCGGTCAATTT-TGAACACGA
325 TGTCTTGGATTTGCCTTGCTTTCCTTTTCATAATCTCGTCCGTATAAGTCAATTTCT-AACACGA
* * * * * *
23251057 AACTAAAAAATCACCTAAATC-AAAAAAATGAATTTCTTGTTTACAAATTTAAAAT-CTGAAAAA
389 AACTACAAAATCACCTAAATCGACAAAAATGAATTTCTGGTTTTCAAAATTAAAATCCCG-AAAA
* * *
23251120 GAAATCAGTTTTCAATGCATTGGTGTAGCTCGTCCAAGTTCAGG-TTAAAGTTCCAGGTCGAGTT
453 GAAATCAGTTTTCAATGCATTGGTGTAACTCGTCCAAGTT-TGGCTTAAACTTCCAGGTCG-GTT
* * ** *
23251184 TGAGGTGTTACATTTAGTGGTATCAACCTAGGATGACTTTCTTGGTGAATTTCT-TATGGATGAG
516 TGGGGTGTTACATTTAGTGGTATCAACC-GGGATGACTTTCTTGGTGTGTTT-TGGATGGATGAG
** * * *
23251248 TTTAGGGGAGAACTCTATTTTTGTGTGTAACGGAGTTTCGGAAGATTGTTTCTGATAAATCTGCG
579 TTCGGGGGAGAACTCTATTTTT-TGTGTAACGGAGTTTGGGAAGACTGTTTCTGATAAATCTGCA
* * * ** *
23251313 TTCTGATTTGTTTGAAAAATACTGCATTTGCATAAACATACATGTTCTGTTCTTCTCTAATCCGT
643 TTCTGATCTGTTTGAAAAATACTGCATCTGCATAAACATACATGTTCTGTTCTGCTCTGCTCCAT
* * * *
23251378 TTAGTTCTGTTCAGTTCTGTTCTGC
708 TTTGTTCTGTTCTGTTCAGTTCTAC
* * * *
23251403 TCTGCTCTATACCATTCAGTTTTGTTATGCTCTATTATGTTTTACTTTATTCTGTTGTACTACCT
1 TCTACTCTATACCATTCGGTTTTGTTATGCTCTATTATGTTTTGCTTTGTTCTGTTGTACTACCT
* * * * *
23251468 TTGCTTAAATCTCTATGATACTCTAGAGTTGTCCGTACTGGCTATACAACTACTCCTAAGTTATT
66 TTGATTAAATCTCTGTGATACTCTAGAGTTGTCCGTACTGGTTATACAACTGCTCTTAAGTTATT
* *
23251533 TGCGTTACTACGAGTTATATAGTATGCTCT-CTTTATTTGTATTTGAGCCCGGTTATAAGCGGTG
131 TGCGTTACTACGAGTTATATAGTATGCTCTAC-TTATTTGTATTTGAGCCTGGTTATACGCGGTG
* * * * *
23251597 CTTGGTTACTCACTCTTTGTCTTACCTTCATCTATTCATGAAAACATCTGATTTAGGATCGGACG
195 CTTGGTAACTCACCCTTTGTCTTACCTTCATCTGTTCAGGAAAACATCTGATTTAGGATCGAACG
* * * * * *
23251662 GCATATGAGAGCTCGGACTGTTTTACACTGAAATAACTGCGAATTGATCTTTTGGGTTTGTAAAT
260 GCGTACGAGAGCTCAGATTGTTTTACACTAAAATAACTACGAATTGATCTTTTGGGTTTGTAAAT
* * *
23251727 TGTCTTGGATTTGCCTTGCTTTCCTTTTCATAATCTCGTTCGTATAAATAAATTTCTAACACGAA
325 TGTCTTGGATTTGCCTTGCTTTCCTTTTCATAATCTCGTCCGTATAAGTCAATTTCTAACACGAA
* * * *
23251792 ACTACAAAATCACCTAAATCGAAAAAAATGAATTTTTGGTTTTCCAAATTAAAATCCTGAAAAGA
390 ACTACAAAATCACCTAAATCGACAAAAATGAATTTCTGGTTTTCAAAATTAAAATCCCGAAAAGA
* * * * * * *
23251857 AATCAGTTTTCAATGCATTGGTGTAGCTAGTCCAAGTGTGACTTAAAATTTCAAGTCAGGTTTGG
455 AATCAGTTTTCAATGCATTGGTGTAACTCGTCCAAGTTTGGCTTAAACTTCCAGGTC-GGTTTGG
* * *
23251922 GGTGTTACATTTAGTGGTATCAACCTAGGATGACTTTC-T--T-T-TTGTGCA---ATGGAGTT-
519 GGTGTTACATTTAGTGGTATCAACC-GGGATGACTTTCTTGGTGTGTTTTGGATGGAT-GAGTTC
** * * * * * * * * *
23251978 TTGGAAG-A--CT-GTTTCTGAT-AAATCTGCGTTCT--G-A-TCTG-TT-T-A-AAATATAC-T
582 GGGGGAGAACTCTATTTTTTG-TGTAA-CGGAGTT-TGGGAAGACTGTTTCTGATAAATCTGCAT
* *** * * * * * ***
23252029 AC--ATC---TT----AATA-T--A----CAT--ACATGTTTTTTTCTGCTCCGCTCAGTTTTGT
644 TCTGATCTGTTTGAAAAATACTGCATCTGCATAAACAT-ACATGTTCTGTTCTGCTCTGCTCCAT
* * * * * *
23252076 TCTATTCTATTCAGTT--TTGCT--
708 TTTGTTCTGTTCTGTTCAGTTCTAC
* * * * * * * *
23252097 T-TTCTCTGTACCATTCGATCTTATTCTACTCTATTATGTTTT--TTTGTTCTATTGTACTACCT
1 TCTACTCTATACCATTCGGTTTTGTTATGCTCTATTATGTTTTGCTTTGTTCTGTTGTACTACCT
* * *
23252159 TTGATTAAATCTCTGTGATACTCTAGAGTCGTCCGTACTAGTTATACAACTAG-TGTTAAGTTAT
66 TTGATTAAATCTCTGTGATACTCTAGAGTTGTCCGTACTGGTTATACAACT-GCTCTTAAGTTAT
** * * * *
23252223 TTATGTTACTACGAGTTATATAATATGCTCTGCTTATTTGTATTTGAGACTGGTTATAAGCGGTG
130 TTGCGTTACTACGAGTTATATAGTATGCTCTACTTATTTGTATTTGAGCCTGGTTATACGCGGTG
* * * *
23252288 CTTGGTAACTCACCCTTTGTCTTACCTTCATCTATTCAGAAAAATATCTGATTTAGGATCGGACG
195 CTTGGTAACTCACCCTTTGTCTTACCTTCATCTGTTCAGGAAAACATCTGATTTAGGATCGAACG
*** * *
23252353 AAATACGAGAGCTC-GAATTATTTTACACTAAAATAACTACAAATTGATCTTTTGGGTTTGTAAA
260 GCGTACGAGAGCTCAG-ATTGTTTTACACTAAAATAACTACGAATTGATCTTTTGGGTTTGTAAA
* * * * * * *
23252417 TTATCTTGGATTTGCCTTGCTTTCCTTTTGATTATCTCGTCCATATAAAT-AATTTTCTAAAATG
324 TTGTCTTGGATTTGCCTTGCTTTCCTTTTCATAATCTCGTCCGTATAAGTCAA-TTTCTAACACG
* * * * * *
23252481 AAACTACAAAATCACCTAATTAGAAAAAAAAATGAACTTC-GAATTTTCAAACTTAAAATCCCGA
388 AAACTACAAAATCACCTAAATCG--ACAAAAATGAATTTCTG-GTTTTCAAAATTAAAATCCCGA
* * * * *
23252545 AAAGAAATCAGTTTTCAATGCATTGGTGTAATTCATCCAAGTTCGGCTTAAACTTCTAAGTCGGG
450 AAAGAAATCAGTTTTCAATGCATTGGTGTAACTCGTCCAAGTTTGGCTTAAACTTCCAGGTC-GG
* * * *
23252610 ATTTAGGGTGTTACATTTAGTGGTCTCAACCCAGGATGACTTTCTTTGTGTGTTTTGGATGGATG
514 -TTTGGGGTGTTACATTTAGTGGTATCAA-CCGGGATGACTTTCTTGGTGTGTTTTGGATGGATG
* * * *
23252675 ACTTCGAGGGAGAACTCTATTTTTGTGTGTAACGGAGTTTAGGAAGACTGTTTCTAATAAATCTG
577 AGTTCGGGGGAGAACTCTATTTTT-TGTGTAACGGAGTTTGGGAAGACTGTTTCTGATAAATCTG
* * * * * * *
23252740 CGTTCTAATCTGTTTGAAAAAAATTGCATCTGCATAAACGTACATGTTATGTTCTGCTCTGCACC
641 CATTCTGATCTGTTTGAAAAATACTGCATCTGCATAAACATACATGTTCTGTTCTGCTCTGCTCC
* *
23252805 GTTTTGTTTTGTTCTGTTCTGTTCAATTCTGTTCTGTTCTGTTC
706 -----ATTTTGTTCTGTTCTGTTC-A---------GTTC--TAC
* * ** * * * * *
23252849 TGTTCTGCTCTGTACCATTAAGTTTTGTTCTCCTCTGTTATGTTTTGCTTTGCTCTATTGTACTA
1 ---TCTACTCTATACCATTCGGTTTTGTTATGCTCTATTATGTTTTGCTTTGTTCTGTTGTACTA
* * * * * *
23252914 CCTTTGATTAAATCTTTGTGGTACTCTAGAGTTGTCCGTAATGGTTATACAACCGGTCTGAAGTT
63 CCTTTGATTAAATCTCTGTGATACTCTAGAGTTGTCCGTACTGGTTATACAACTGCTCTTAAGTT
* * * * * **
23252979 ATTTTCATTACTACGAGTTATATAGTATGCTCTGCTTATTTGTATTTTACCCTGGTTATACGTAG
128 ATTTGCGTTACTACGAGTTATATAGTATGCTCTACTTATTTGTATTTGAGCCTGGTTATACGCGG
* * * *
23253044 TGCTTGGTAACTCACCTTTTGTCTTACCTTCATCTGTTCAGGAAAACATCTTATTTAGGATTGGA
193 TGCTTGGTAACTCACCCTTTGTCTTACCTTCATCTGTTCAGGAAAACATCTGATTTAGGATCGAA
* * ** * * *
23253109 TGGTGTACGAGAGCTTGGATTGTTTTACACTGAAATAACTGCGAATTGATCTTTTGGTTTTGTAA
258 CGGCGTACGAGAGCTCAGATTGTTTTACACTAAAATAACTACGAATTGATCTTTTGGGTTTGTAA
** * * *
23253174 ATTGTCTTGGATTTGCCTTGCTTTCCTTTAGATAATCTCATCCGTATAAATAAATTTCTAACACG
323 ATTGTCTTGGATTTGCCTTGCTTTCCTTTTCATAATCTCGTCCGTATAAGTCAATTTCTAACACG
* ** *
23253239 AAACTACAAAATCACCTAAATCAACAAAAACAAATTTCTGGTTTTCAAAATTAAAATCCCGAGAA
388 AAACTACAAAATCACCTAAATCGACAAAAATGAATTTCTGGTTTTCAAAATTAAAATCCCGAAAA
* * * *
23253304 GAAATCAGTTTTCAATGCATTGGTGTAACTCGTCCAAGATCGGCTAAAACTTCCAGATCAGGTTT
453 GAAATCAGTTTTCAATGCATTGGTGTAACTCGTCCAAGTTTGGCTTAAACTTCCAGGTC-GGTTT
23253369 GGGGTGTTACATTTAGTGGTATCAACCTGGGATGACTTTCTTGGTGTGTTTTGGATGGATGAGCT
517 GGGGTGTTACATTTAGTGGTATCAACC-GGGATGACTTTCTTGGTGTGTTTTGGATGGATGAG-T
* * * *
23253434 TC-GGGGAGAACTCTACTTTTGTGTGTAACGAAGTTTGGGTAGATTGTTTCTGATAAATCTGCAT
580 TCGGGGGAGAACTCTA-TTTTTTGTGTAACGGAGTTTGGGAAGACTGTTTCTGATAAATCTGCAT
* ** * * * *
23253498 TTTGAAATGTTTGAAAAATACTGCATCTGCATAAACAAACAAT-ATCTTTTCAGCTCTGCTCCAT
644 TCTGATCTGTTTGAAAAATACTGCATCTGCATAAACATAC-ATGTTCTGTTCTGCTCTGCTCCAT
* * * * *
23253562 TTTCTTTTGTTCTATTCAGTTATGC
708 TTTGTTCTGTTCTGTTCAGTTCTAC
* ** * * *** * * * *
23253587 TTTGTTATGTACCATTCAACTTTGTTCTGCTCTATTATGTTTTGCTTTCTTCTATTTTACTACCT
1 TCTACTCTATACCATTCGGTTTTGTTATGCTCTATTATGTTTTGCTTTGTTCTGTTGTACTACCT
* * * * * *
23253652 TTGATTAAATCCCTATGATACTCTACAGTTGTCCGTACTGGTTATTCAACTGCTCTGAAATTATT
66 TTGATTAAATCTCTGTGATACTCTAGAGTTGTCCGTACTGGTTATACAACTGCTCTTAAGTTATT
* * ** * * *
23253717 TGTGTTACTACGAGTTATATAGTATGCACGGCTTATTTATATTTGAGCATGGTTATACACGGTGC
131 TGCGTTACTACGAGTTATATAGTATGCTCTACTTATTTGTATTTGAGCCTGGTTATACGCGGTGC
* * * *
23253782 TTGGTAACTCACCCTTTGTCTTACCTTCATCTATTTAGGAAAACATCTGATTTAGGAT-AAGATG
196 TTGGTAACTCACCCTTTGTCTTACCTTCATCTGTTCAGGAAAACATCTGATTTAGGATCGA-ACG
* * * * * * * * *
23253846 GTGTACGACAGCTCGGATTGTTTTACTCTGAAATAACTGCGAATTAATCTTTTAGATTTGTAAAT
260 GCGTACGAGAGCTCAGATTGTTTTACACTAAAATAACTACGAATTGATCTTTTGGGTTTGTAAAT
* * * * *
23253911 TGTCTTGGATTTTCCTTGCTTTCCTTTTCATAATCTCGTCTGTATAAATAAATTTATAACACGAA
325 TGTCTTGGATTTGCCTTGCTTTCCTTTTCATAATCTCGTCCGTATAAGTCAATTTCTAACACGAA
23253976 ACTACAAAATCACCTAAATCGACAAAAATGAATTTCTGGTTTTCAAAATTAAAATCCCGAAAAGA
390 ACTACAAAATCACCTAAATCGACAAAAATGAATTTCTGGTTTTCAAAATTAAAATCCCGAAAAGA
** * *
23254041 AATTTG-TTTAAATGCATTGGTGTAACTCGTCCAAGTTCGGCTTAAACTTCCAGGTCGAGTTTGG
455 AATCAGTTTTCAATGCATTGGTGTAACTCGTCCAAGTTTGGCTTAAACTTCCAGGTCG-GTTTGG
* * *
23254105 GGTGTTACATTTAGTGGTATCACCCTGGGATGACTTTCTTTGTGTGTTTTGGATGGATGAGCTC-
519 GGTGTTACATTTAGTGGTATCAACC-GGGATGACTTTCTTGGTGTGTTTTGGATGGATGAGTTCG
* * * * * * * ***
23254169 TGGGAGAACTC-AATTTGTGTGTAACGAAATTTAGGAATACTGTTTCTGATAAATCTATTTTCTG
583 GGGGAGAACTCTATTTTTTGTGTAACGGAGTTTGGGAAGACTGTTTCTGATAAATCTGCATTCTG
* * * *
23254233 ATCTGTTTAAAAAATACTACATCTGCATAAACATACATGTTCTGTGCTACTCTGCTCCATTTTGT
648 ATCTGTTTGAAAAATACTGCATCTGCATAAACATACATGTTCTGTTCTGCTCTGCTCCATTTTGT
* * *
23254298 TCTTTTTTGTTCAGTTCTGC
713 TCTGTTCTGTTCAGTTCTAC
* ** * * *
23254318 TCTACTCTGTATGATTCGATTTTGTTCTGCTCTATTATGATTTT-CTTTGTTTTGTTGTACTACC
1 TCTACTCTATACCATTCGGTTTTGTTATGCTCTATTATG-TTTTGCTTTGTTCTGTTGTACTACC
* * * *
23254382 TTTGATTAAATCTCTGTGATACTCTAGAGTCGTCCGTAGTAGTTATACAACTGCTCTTAACTTAT
65 TTTGATTAAATCTCTGTGATACTCTAGAGTTGTCCGTACTGGTTATACAACTGCTCTTAAGTTAT
* * * *
23254447 CTT-CGTTACTACGAGTTATATAGTATGATCTACTTATTTTTATTTGAGTC-GTGTTATACGCAG
130 -TTGCGTTACTACGAGTTATATAGTATGCTCTACTTATTTGTATTTGAGCCTG-GTTATACGCGG
* * * * *
23254510 TGC-TGTGTAACTCACCCTTTTTCTTACCTTCATCTGTTTAGGAAAATATCTAATTTAGAATC-A
193 TGCTTG-GTAACTCACCCTTTGTCTTACCTTCATCTGTTCAGGAAAACATCTGATTTAGGATCGA
* * * * *
23254573 GACAGCGTACGAGTGCTCGGATTGTTTTACACTGAAATAACTGCGAATTGATCTTTTGGGTTTGT
257 -ACGGCGTACGAGAGCTCAGATTGTTTTACACTAAAATAACTACGAATTGATCTTTTGGGTTTGT
** * *
23254638 AAATTGTCTTGGATTTGCCTTGCTTTCCTTTTGGTAATCTCGTTCGTATTAGTCAATTTCTAACA
321 AAATTGTCTTGGATTTGCCTTGCTTTCCTTTTCATAATCTCGTCCGTATAAGTCAATTTCTAACA
* ** * *
23254703 CGAAACTACGAAATCACCTAAATCGA-AATAAACAAATTTCTAGTTTTCAAAATT-AAATCCCAA
386 CGAAACTACAAAATCACCTAAATCGACAA-AAATGAATTTCTGGTTTTCAAAATTAAAATCCCGA
* * * *
23254766 AAAGAAATCAGTTTTCATTGTC-TTGGTG-AACTCGTCCAAGTTCGGCTTAGACTTCCAGGTTGG
450 AAAGAAATCAGTTTTCAATG-CATTGGTGTAACTCGTCCAAGTTTGGCTTAAACTTCCAGG-TCG
* *
23254829 GTTTGGGGTGTTACATTCAGTGGTATCAACCTGGGATGCCTTTCTTGGTGTGTTTTGGATGGATG
513 GTTTGGGGTGTTACATTTAGTGGTATCAACC-GGGATGACTTTCTTGGTGTGTTTTGGATGGATG
* * * *
23254894 AGTTCGAGAGAGAACTCTATTTTTGTGTGTAACGGAGTTCT-GGAAGACTATTTTTGATAAATCT
577 AGTTCGGGGGAGAACTCTATTTTT-TGTGTAACGGAGTT-TGGGAAGACTGTTTCTGATAAATCT
* * ** * *
23254958 ACGTTCCAATCTGTTTGAAAAATACTGCATCTGCATAAACATACATGTTTTGTTCTGCTCTGCAC
640 GCATTCTGATCTGTTTGAAAAATACTGCATCTGCATAAACATACATGTTCTGTTCTGCTCTGCTC
* *
23255023 CGTTTTGTTCTGTCCTGTTC
705 CATTTTGTTCTGTTCTGTTC
23255043 TATTCTGCTT
Statistics
Matches: 6113, Mismatches: 1009, Indels: 467
0.81 0.13 0.06
Matches are distributed among these distances:
690 3 0.00
691 320 0.05
692 2 0.00
693 118 0.02
694 39 0.01
695 3 0.00
696 3 0.00
697 5 0.00
698 27 0.00
699 8 0.00
701 4 0.00
702 6 0.00
703 2 0.00
705 4 0.00
706 13 0.00
707 5 0.00
708 1 0.00
709 3 0.00
710 4 0.00
711 1 0.00
712 1 0.00
713 8 0.00
714 2 0.00
715 2 0.00
716 9 0.00
717 1 0.00
718 1 0.00
719 4 0.00
720 2 0.00
721 1 0.00
722 5 0.00
723 12 0.00
724 4 0.00
726 2 0.00
727 6 0.00
728 5 0.00
729 86 0.01
730 221 0.04
731 515 0.08
732 235 0.04
733 1423 0.23
734 650 0.11
735 580 0.09
736 48 0.01
737 140 0.02
738 266 0.04
739 6 0.00
740 4 0.00
741 38 0.01
742 2 0.00
743 5 0.00
745 1 0.00
746 3 0.00
747 4 0.00
748 2 0.00
749 2 0.00
750 18 0.00
751 2 0.00
752 7 0.00
753 3 0.00
754 10 0.00
755 157 0.03
756 134 0.02
757 3 0.00
758 316 0.05
759 3 0.00
761 3 0.00
762 1 0.00
763 4 0.00
764 3 0.00
765 8 0.00
767 7 0.00
768 4 0.00
769 2 0.00
771 4 0.00
772 2 0.00
774 2 0.00
775 7 0.00
776 1 0.00
777 44 0.01
778 332 0.05
779 60 0.01
780 37 0.01
781 1 0.00
782 3 0.00
783 2 0.00
784 2 0.00
785 61 0.01
786 2 0.00
787 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (732 bp):
TCTACTCTATACCATTCGGTTTTGTTATGCTCTATTATGTTTTGCTTTGTTCTGTTGTACTACCT
TTGATTAAATCTCTGTGATACTCTAGAGTTGTCCGTACTGGTTATACAACTGCTCTTAAGTTATT
TGCGTTACTACGAGTTATATAGTATGCTCTACTTATTTGTATTTGAGCCTGGTTATACGCGGTGC
TTGGTAACTCACCCTTTGTCTTACCTTCATCTGTTCAGGAAAACATCTGATTTAGGATCGAACGG
CGTACGAGAGCTCAGATTGTTTTACACTAAAATAACTACGAATTGATCTTTTGGGTTTGTAAATT
GTCTTGGATTTGCCTTGCTTTCCTTTTCATAATCTCGTCCGTATAAGTCAATTTCTAACACGAAA
CTACAAAATCACCTAAATCGACAAAAATGAATTTCTGGTTTTCAAAATTAAAATCCCGAAAAGAA
ATCAGTTTTCAATGCATTGGTGTAACTCGTCCAAGTTTGGCTTAAACTTCCAGGTCGGTTTGGGG
TGTTACATTTAGTGGTATCAACCGGGATGACTTTCTTGGTGTGTTTTGGATGGATGAGTTCGGGG
GAGAACTCTATTTTTTGTGTAACGGAGTTTGGGAAGACTGTTTCTGATAAATCTGCATTCTGATC
TGTTTGAAAAATACTGCATCTGCATAAACATACATGTTCTGTTCTGCTCTGCTCCATTTTGTTCT
GTTCTGTTCAGTTCTAC
Found at i:23249216 original size:45 final size:45
Alignment explanation
Indices: 23249128--23249216 Score: 117
Period size: 45 Copynumber: 2.0 Consensus size: 45
23249118 GCTCTGCTCC
* *
23249128 GTTTTGTTCTATTCTGTTCAATTCTGCTCCGTCTTGTATCATTCG
1 GTTTTGTTATATTCTGTTCAATTCTGCTCCGTCTTGTACCATTCG
* * *
23249173 GTTTTGTTATGTTCTGTTCAGTTCTGCTCTG-CTCTGTACCATTC
1 GTTTTGTTATATTCTGTTCAATTCTGCTCCGTCT-TGTACCATTC
23249217 CATTTTCTTC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
44 2 0.05
45 36 0.95
ACGTcount: A:0.10, C:0.22, G:0.17, T:0.51
Consensus pattern (45 bp):
GTTTTGTTATATTCTGTTCAATTCTGCTCCGTCTTGTACCATTCG
Found at i:23252813 original size:5 final size:5
Alignment explanation
Indices: 23252809--23252861 Score: 70
Period size: 5 Copynumber: 10.6 Consensus size: 5
23252799 TGCACCGTTT
* ** *
23252809 TGTTT TGTTC TGTTC TGTTC AATTC TGTTC TGTTC TGTTC TGTTC TGCTC
1 TGTTC TGTTC TGTTC TGTTC TGTTC TGTTC TGTTC TGTTC TGTTC TGTTC
23252859 TGT
1 TGT
23252862 ACCATTAAGT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.04, C:0.19, G:0.19, T:0.58
Consensus pattern (5 bp):
TGTTC
Found at i:23254552 original size:731 final size:733
Alignment explanation
Indices: 23251974--23255033 Score: 3625
Period size: 731 Copynumber: 4.1 Consensus size: 733
23251964 TGTGCAATGG
* * * * **
23251974 AGTTTTGGAAGACTGTTTCTGATAAATCTGCGTTCTGATCTGTTTAAAATATACTACATCTTAAT
1 AGTTTAGGAAGACTGTTTCTGATAAATCTACGTTCTGATCTGTTTAAAAAATACTGCATCTGCAT
* * * * * * * *
23252039 ATACATACATGTTTTTTTCTGCTCCGCT-CAGTTTTGTTCTATTCTATTCAGTTTTGCTTTTCTC
66 AAACATACATGTTCTGTTCTGCTCTGCTCCA-TTTTGTTCTTTTCTATTCAGTTCTGCTCTGCTC
* * * *
23252103 TGTACCATTCGATCTTATTCTACTCTATTATGTTTT--TTTGTTCTATTGTACTACCTTTGATTA
130 TGTACCATTCAATTTTGTTCTGCTCTATTATGTTTTGCTTTGTTCTATTGTACTACCTTTGATTA
* * *
23252166 AATCTCTGTGATACTCTAGAGTCGTCCGTACTAGTTATACAACTAG-TGTTAAGTTATTTATGTT
195 AATCTCTGTGATACTCTAGAGTCGTCCGTACTAGTTATACAACT-GCTCTGAAGTTATTTACGTT
* * * *
23252230 ACTACGAGTTATATAATATGCTCTGCTTATTTGTATTTGAGACTGGTTATAAGCGGTGCTTGGTA
259 ACTACGAGTTATATAGTATGATCTGCTTATTTGTATTTGAG-CTGGTTATACGCAGTGCTTGGTA
* * * ***
23252295 ACTCACCCTTTGTCTTACCTTCATCTATTCAGAAAAATATCTGATTTAGGATCGGACGAAATACG
323 ACTCACCCTTTGTCTTACCTTCATCTATTCAGGAAAACATCTGATTTAGGATCAGACGGTGTACG
* * * * * *
23252360 AGAGCTCGAATTATTTTACACTAAAATAACTACAAATTGATCTTTTGGGTTTGTAAATTATCTTG
388 AGAGCTCGGATTGTTTTACACTGAAATAACTGCGAATTGATCTTTTGGGTTTGTAAATTGTCTTG
* * * * *
23252425 GATTTGCCTTGCTTTCCTTTTGATTATCTCGTCCATATAAATAATTTTCTAAAATGAAACTACAA
453 GATTTGCCTTGCTTTCCTTTTGATAATCTCGTCCGTATAAATAAATTTCTAACACGAAACTACAA
* * * * * * *
23252490 AATCACCTAATTAGAAAAAAAAATGAACTTC-GAATTTTCAAACTTAAAATCCCGAAAAGAAATC
518 AATCACCTAAATCGACAAAAACA--AATTTCTG-GTTTTCAAAATTAAAATCCCGAAAAGAAATC
* * * * * *
23252554 AGTTTTCAATGCATTGGTGTAATTCATCCAAGTTCGGCTTAAACTTCTAAGTCGGGATTTAGGGT
580 AGTTTTCAATGCATTGGTGTAACTCGTCCAAGTTCGGCTTAAACTTCCAGGTCGAG-TTTGGGGT
* ** *
23252619 GTTACATTTAGTGGTCTCAACCCAGGATGACTTTCTTTGTGTGTTTTGGATGGATGA-CTTCGAG
644 GTTACATTTAGTGGTATCAACCTGGGATGACTTTCTTGGTGTGTTTTGGATGGATGAGCTTC--G
*
23252683 GGAGAACTCTATTTTTGTGTGTAACGG
707 GGAGAACTCTATTTTTGTGTGTAACGA
* * * *
23252710 AGTTTAGGAAGACTGTTTCTAATAAATCTGCGTTCTAATCTGTTTGAAAAAA-ATTGCATCTGCA
1 AGTTTAGGAAGACTGTTTCTGATAAATCTACGTTCTGATCTGTTT-AAAAAATACTGCATCTGCA
* * * * *
23252774 TAAACGTACATGTTATGTTCTGCTCTGCACCGTTTTGTTTTGTTCTGTTCTGTTCAATTCTGTTC
65 TAAACATACATGTTCTGTTCTGCTCTGCTCC--------AT-TT-TGTTC--TT---TTCTATTC
* * * *
23252839 TGTTCTGTTCTGTTCTGCTCTGTACCATT-AAGTTTTGTTCTCCTCTGTTATGTTTTGCTTTGCT
115 AGTTCTG--C---TCTGCTCTGTACCATTCAA-TTTTGTTCTGCTCTATTATGTTTTGCTTTGTT
* * * * * *
23252903 CTATTGTACTACCTTTGATTAAATCTTTGTGGTACTCTAGAGTTGTCCGTAATGGTTATACAACC
174 CTATTGTACTACCTTTGATTAAATCTCTGTGATACTCTAGAGTCGTCCGTACTAGTTATACAACT
* * * * * *
23252968 GGTCTGAAGTTATTTTCATTACTACGAGTTATATAGTATGCTCTGCTTATTTGTATTTTACCCTG
239 GCTCTGAAGTTATTTACGTTACTACGAGTTATATAGTATGATCTGCTTATTTGTATTTGA-GCTG
* * * *
23253033 GTTATACGTAGTGCTTGGTAACTCACCTTTTGTCTTACCTTCATCTGTTCAGGAAAACATCTTAT
303 GTTATACGCAGTGCTTGGTAACTCACCCTTTGTCTTACCTTCATCTATTCAGGAAAACATCTGAT
** * *
23253098 TTAGGATTGGATGGTGTACGAGAGCTTGGATTGTTTTACACTGAAATAACTGCGAATTGATCTTT
368 TTAGGATCAGACGGTGTACGAGAGCTCGGATTGTTTTACACTGAAATAACTGCGAATTGATCTTT
* * *
23253163 TGGTTTTGTAAATTGTCTTGGATTTGCCTTGCTTTCCTTTAGATAATCTCATCCGTATAAATAAA
433 TGGGTTTGTAAATTGTCTTGGATTTGCCTTGCTTTCCTTTTGATAATCTCGTCCGTATAAATAAA
*
23253228 TTTCTAACACGAAACTACAAAATCACCTAAATCAACAAAAACAAATTTCTGGTTTTCAAAATTAA
498 TTTCTAACACGAAACTACAAAATCACCTAAATCGACAAAAACAAATTTCTGGTTTTCAAAATTAA
* * *
23253293 AATCCCGAGAAGAAATCAGTTTTCAATGCATTGGTGTAACTCGTCCAAGATCGGCTAAAACTTCC
563 AATCCCGAAAAGAAATCAGTTTTCAATGCATTGGTGTAACTCGTCCAAGTTCGGCTTAAACTTCC
*
23253358 AGATC-AGGTTTGGGGTGTTACATTTAGTGGTATCAACCTGGGATGACTTTCTTGGTGTGTTTTG
628 AGGTCGA-GTTTGGGGTGTTACATTTAGTGGTATCAACCTGGGATGACTTTCTTGGTGTGTTTTG
*
23253422 GATGGATGAGCTTCGGGGAGAACTCTACTTTTGTGTGTAACGA
692 GATGGATGAGCTTC-GGGAGAACTCTATTTTTGTGTGTAACGA
* * * * * * ** *
23253465 AGTTTGGGTAGATTGTTTCTGATAAATCTGCATTTTGAAATGTTTGAAAAATACTGCATCTGCAT
1 AGTTTAGGAAGACTGTTTCTGATAAATCTACGTTCTGATCTGTTTAAAAAATACTGCATCTGCAT
* * * * * * * *
23253530 AAACAAACAAT-ATCTTTTCAGCTCTGCTCCATTTTCTT-TTGTTCTATTCAGTTATGCTTTGTT
66 AAACATAC-ATGTTCTGTTCTGCTCTGCTCCATTTTGTTCTT-TTCTATTCAGTTCTGCTCTGCT
* * * *
23253593 ATGTACCATTCAACTTTGTTCTGCTCTATTATGTTTTGCTTTCTTCTATTTTACTACCTTTGATT
129 CTGTACCATTCAATTTTGTTCTGCTCTATTATGTTTTGCTTTGTTCTATTGTACTACCTTTGATT
* * * * * * * **
23253658 AAATCCCTATGATACTCTACAGTTGTCCGTACTGGTTATTCAACTGCTCTGAAATTATTTGTGTT
194 AAATCTCTGTGATACTCTAGAGTCGTCCGTACTAGTTATACAACTGCTCTGAAGTTATTTACGTT
* * * *
23253723 ACTACGAGTTATATAGTATGCA-CGGCTTATTTATATTTGAGCATGGTTATACACGGTGCTTGGT
259 ACTACGAGTTATATAGTATG-ATCTGCTTATTTGTATTTGAGC-TGGTTATACGCAGTGCTTGGT
* * *
23253787 AACTCACCCTTTGTCTTACCTTCATCTATTTAGGAAAACATCTGATTTAGGATAAGATGGTGTAC
322 AACTCACCCTTTGTCTTACCTTCATCTATTCAGGAAAACATCTGATTTAGGATCAGACGGTGTAC
* * * * *
23253852 GACAGCTCGGATTGTTTTACTCTGAAATAACTGCGAATTAATCTTTTAGATTTGTAAATTGTCTT
387 GAGAGCTCGGATTGTTTTACACTGAAATAACTGCGAATTGATCTTTTGGGTTTGTAAATTGTCTT
* * * *
23253917 GGATTTTCCTTGCTTTCCTTTTCATAATCTCGTCTGTATAAATAAATTTATAACACGAAACTACA
452 GGATTTGCCTTGCTTTCCTTTTGATAATCTCGTCCGTATAAATAAATTTCTAACACGAAACTACA
** **
23253982 AAATCACCTAAATCGACAAAAATGAATTTCTGGTTTTCAAAATTAAAATCCCGAAAAGAAATTTG
517 AAATCACCTAAATCGACAAAAACAAATTTCTGGTTTTCAAAATTAAAATCCCGAAAAGAAATCAG
*
23254047 -TTTAAATGCATTGGTGTAACTCGTCCAAGTTCGGCTTAAACTTCCAGGTCGAGTTTGGGGTGTT
582 TTTTCAATGCATTGGTGTAACTCGTCCAAGTTCGGCTTAAACTTCCAGGTCGAGTTTGGGGTGTT
* *
23254111 ACATTTAGTGGTATCACCCTGGGATGACTTTCTTTGTGTGTTTTGGATGGATGAGC-TCTGGGAG
647 ACATTTAGTGGTATCAACCTGGGATGACTTTCTTGGTGTGTTTTGGATGGATGAGCTTC-GGGAG
*
23254175 AACTC-A-ATTTGTGTGTAACGA
711 AACTCTATTTTTGTGTGTAACGA
* * ** *
23254196 AATTTAGGAATACTGTTTCTGATAAATCTATTTTCTGATCTGTTTAAAAAATACTACATCTGCAT
1 AGTTTAGGAAGACTGTTTCTGATAAATCTACGTTCTGATCTGTTTAAAAAATACTGCATCTGCAT
* * * * *
23254261 AAACATACATGTTCTGTGCTACTCTGCTCCATTTTGTTCTTTTTTGTTCAGTTCTGCTCTACTCT
66 AAACATACATGTTCTGTTCTGCTCTGCTCCATTTTGTTCTTTTCTATTCAGTTCTGCTCTGCTCT
** * * *
23254326 GTATGATTCGATTTTGTTCTGCTCTATTATGATTTT-CTTTGTTTTGTTGTACTACCTTTGATTA
131 GTACCATTCAATTTTGTTCTGCTCTATTATG-TTTTGCTTTGTTCTATTGTACTACCTTTGATTA
* * *
23254390 AATCTCTGTGATACTCTAGAGTCGTCCGTAGTAGTTATACAACTGCTCTTAACTTATCTT-CGTT
195 AATCTCTGTGATACTCTAGAGTCGTCCGTACTAGTTATACAACTGCTCTGAAGTTAT-TTACGTT
* *
23254454 ACTACGAGTTATATAGTATGATCTACTTATTTTTATTTGAG-TCGTGTTATACGCAGTGC-TGTG
259 ACTACGAGTTATATAGTATGATCTGCTTATTTGTATTTGAGCT-G-GTTATACGCAGTGCTTG-G
* * * * * * * *
23254517 TAACTCACCCTTTTTCTTACCTTCATCTGTTTAGGAAAATATCTAATTTAGAATCAGACAGCGTA
321 TAACTCACCCTTTGTCTTACCTTCATCTATTCAGGAAAACATCTGATTTAGGATCAGACGGTGTA
*
23254582 CGAGTGCTCGGATTGTTTTACACTGAAATAACTGCGAATTGATCTTTTGGGTTTGTAAATTGTCT
386 CGAGAGCTCGGATTGTTTTACACTGAAATAACTGCGAATTGATCTTTTGGGTTTGTAAATTGTCT
* * * * *
23254647 TGGATTTGCCTTGCTTTCCTTTTGGTAATCTCGTTCGTATTAGTCAATTTCTAACACGAAACTAC
451 TGGATTTGCCTTGCTTTCCTTTTGATAATCTCGTCCGTATAAATAAATTTCTAACACGAAACTAC
* * *
23254712 GAAATCACCTAAATCGA-AATAAACAAATTTCTAGTTTTCAAAATT-AAATCCCAAAAAGAAATC
516 AAAATCACCTAAATCGACAA-AAACAAATTTCTGGTTTTCAAAATTAAAATCCCGAAAAGAAATC
* * * *
23254775 AGTTTTCATTGTC-TTGGTG-AACTCGTCCAAGTTCGGCTTAGACTTCCAGGTTGGGTTTGGGGT
580 AGTTTTCAATG-CATTGGTGTAACTCGTCCAAGTTCGGCTTAAACTTCCAGGTCGAGTTTGGGGT
* *
23254838 GTTACATTCAGTGGTATCAACCTGGGATGCCTTTCTTGGTGTGTTTTGGATGGATGAG-TTCGAG
644 GTTACATTTAGTGGTATCAACCTGGGATGACTTTCTTGGTGTGTTTTGGATGGATGAGCTTCG-G
*
23254902 AGAGAACTCTATTTTTGTGTGTAACGG
708 -GAGAACTCTATTTTTGTGTGTAACGA
* * ** *
23254929 AGTTCT-GGAAGACTATTTTTGATAAATCTACGTTCCAATCTGTTTGAAAAATACTGCATCTGCA
1 AGTT-TAGGAAGACTGTTTCTGATAAATCTACGTTCTGATCTGTTTAAAAAATACTGCATCTGCA
* * *
23254993 TAAACATACATGTTTTGTTCTGCTCTGCACCGTTTTGTTCT
65 TAAACATACATGTTCTGTTCTGCTCTGCTCCATTTTGTTCT
23255034 GTCCTGTTCT
Statistics
Matches: 1984, Mismatches: 287, Indels: 109
0.83 0.12 0.05
Matches are distributed among these distances:
729 2 0.00
730 123 0.06
731 491 0.25
732 11 0.01
733 113 0.06
734 114 0.06
735 401 0.20
736 75 0.04
737 6 0.00
738 1 0.00
740 12 0.01
742 2 0.00
744 1 0.00
745 5 0.00
746 7 0.00
747 1 0.00
748 1 0.00
751 12 0.01
753 1 0.00
754 5 0.00
755 155 0.08
756 120 0.06
757 2 0.00
758 323 0.16
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (733 bp):
AGTTTAGGAAGACTGTTTCTGATAAATCTACGTTCTGATCTGTTTAAAAAATACTGCATCTGCAT
AAACATACATGTTCTGTTCTGCTCTGCTCCATTTTGTTCTTTTCTATTCAGTTCTGCTCTGCTCT
GTACCATTCAATTTTGTTCTGCTCTATTATGTTTTGCTTTGTTCTATTGTACTACCTTTGATTAA
ATCTCTGTGATACTCTAGAGTCGTCCGTACTAGTTATACAACTGCTCTGAAGTTATTTACGTTAC
TACGAGTTATATAGTATGATCTGCTTATTTGTATTTGAGCTGGTTATACGCAGTGCTTGGTAACT
CACCCTTTGTCTTACCTTCATCTATTCAGGAAAACATCTGATTTAGGATCAGACGGTGTACGAGA
GCTCGGATTGTTTTACACTGAAATAACTGCGAATTGATCTTTTGGGTTTGTAAATTGTCTTGGAT
TTGCCTTGCTTTCCTTTTGATAATCTCGTCCGTATAAATAAATTTCTAACACGAAACTACAAAAT
CACCTAAATCGACAAAAACAAATTTCTGGTTTTCAAAATTAAAATCCCGAAAAGAAATCAGTTTT
CAATGCATTGGTGTAACTCGTCCAAGTTCGGCTTAAACTTCCAGGTCGAGTTTGGGGTGTTACAT
TTAGTGGTATCAACCTGGGATGACTTTCTTGGTGTGTTTTGGATGGATGAGCTTCGGGAGAACTC
TATTTTTGTGTGTAACGA
Found at i:23255606 original size:613 final size:615
Alignment explanation
Indices: 23254432--23255618 Score: 1741
Period size: 613 Copynumber: 1.9 Consensus size: 615
23254422 AGTTATACAA
* *
23254432 CTGCTCTTAACTTATCTTCGTTACTACGAGTTATATAGTATGATCTACTTATTTTTATTTGAGTC
1 CTGCTCTTAACTTATCTTCGTTACTACGAGTTATATAGTATGATCTACTTATTTGTATTTGAGCC
* * * *
23254497 GTGTTATACGCAGTGCTGTGTAACTCACCCTTTTTCTTACCTTCATCTGTTTAGGAAAATATCTA
66 GTGTTATACGCAATGCTGTGTAACTCACCCTTTGTCTTACCTTCATCTGTTCAGGAAAACATCTA
* * *
23254562 ATTTAGAATCAGACAGCGTACGAGTGCTCGGATTGTTTTACACTGAAATAACTGCGAATTGATCT
131 ATTTAGAATCAGACAGCGTACGAGAGCTCGGATTCTTTTACAATGAAATAACTGCGAATTGATCT
* * * * * *
23254627 TTTGGGTTTGTAAATTGTCTTGGATTTGCCTTGCTTTCCTTTTGGTAATCTCGTTCGTATTAGTC
196 TTTGGGTTTGTAAAATATCTTGGATTTGCCTTGCTTTCCATTTGATAATCTCGTCCGTATGAGTC
* *
23254692 AATTTCTAACACGAAACTACGAAATCACCTAAATCGAAATAAACAAATTTCTAGTTTTCAAAATT
261 AATTTCTAACACGAAACTACGAAATCACCTAAATAGAAATAAACAAATTTCTAGTTTACAAAATT
* * *
23254757 AAATCCCAAAAAGAAATCAGTTTTCATTGTCTTGGTGAACTCGTCCAAGTTCGGCTTAGACTTCC
326 AAATCCCAAAAAGAAATCAATTTTCAATGTCTTGGTGAACTCGTCCAAGTTCGGCTTAAACTTCC
* * *
23254822 AGGTTGGGTTTGGGGTGTTACATTCAGTGGTATCAACCTGGGATGCCTTTCTTGGTGTGTTTTGG
391 AGGTTGGGTTTGGGGTGTTACATTCAGTGGTATCAACCTGGAATGACTTTCTTGGTGTGTTTCGG
* * * * *
23254887 ATGGATGAGTTCGAGAGAGAACTCTATTTTTGTGTGTAACGGAGTTCTGGAAGACTATTTTTGAT
456 ATGGATGAGTTCGAGAGAGAACTCTATTTTTGTGTGGAACGAAGTTCGGGAAGACTATTTCTAAT
*
23254952 AAATCTACGTTCCAATCTGTTTGAAAAATACTGCATCTGCATAAACATACATGTTTTGTTCTGCT
521 AAATCTACATTCCAATCTGTTTGAAAAATACTGCATCTGCATAAACATACATGTTTTGTTCTGCT
23255017 CTGCACCGTTTTGTTCTGTCCTGTTCTATT
586 CTGCACCGTTTTGTTCTGTCCTGTTCTATT
*
23255047 CTGCT-TT-ACTTATCTTCGTTACTACGAGTTATATAGTATGCTCTACTTATTTGTATTTGAGCC
1 CTGCTCTTAACTTATCTTCGTTACTACGAGTTATATAGTATGATCTACTTATTTGTATTTGAGCC
23255110 -TGGTTATACGCAATGCT-TGATAACTCACCCTTTGTCTTACCTTCATCTGTTCAGGAAAACATC
66 GT-GTTATACGCAATGCTGTG-TAACTCACCCTTTGTCTTACCTTCATCTGTTCAGGAAAACATC
* * * * *
23255173 TGATTTA-AGATCGGACGGCGTACGAGAGCTCGGATTCTTTTACAATGTAATAACTGTGAATTGA
129 TAATTTAGA-ATCAGACAGCGTACGAGAGCTCGGATTCTTTTACAATGAAATAACTGCGAATTGA
* *
23255237 TCTTTTGGG-TTGTTAAAATATCTTGGATTTTCCTTGCTTTCCATTTGATATTCTCGTCCGTATC
193 TCTTTTGGGTTTG-TAAAATATCTTGGATTTGCCTTGCTTTCCATTTGATAATCTCGTCCGTAT-
* * * * *
23255301 GA-TCAATTTTTCACATGAAACTA-GAAAATCACCTAAATAGACA-AAA-GAATTTCTAGTTTAC
256 GAGTCAATTTCTAACACGAAACTACG-AAATCACCTAAATAGAAATAAACAAATTTCTAGTTTAC
* * *
23255362 AAATTTAAAATCCCAAAAAGAAATCAATTTTCAATG-CATTTGTGTAACTCGTCCAAGTTCGGGT
320 AAAATT-AAATCCCAAAAAGAAATCAATTTTCAATGTC-TTGGTG-AACTCGTCCAAGTTCGGCT
* *
23255426 TAAACTTTCAGGTTGTGTTTGGGGTGTTACATGT-AGTGGTATCAACCTGGAATGACTTTCTTGG
382 TAAACTTCCAGGTTGGGTTTGGGGTGTTACAT-TCAGTGGTATCAACCTGGAATGACTTTCTTGG
* *
23255490 TGTGTTTCGGATGGATGAGTTCGAGGGAGAACTCTATTTTTGTGTGGAACTAAGTTCGGGAAGAC
446 TGTGTTTCGGATGGATGAGTTCGAGAGAGAACTCTATTTTTGTGTGGAACGAAGTTCGGGAAGAC
* *
23255555 TGTTTCTAATAAATCTACATTCTAATCTGTTTGAAAAATACTGCATCTGCATAAACATACATGT
511 TATTTCTAATAAATCTACATTCCAATCTGTTTGAAAAATACTGCATCTGCATAAACATACATGT
23255619 GCTCTGCTCC
Statistics
Matches: 511, Mismatches: 51, Indels: 22
0.88 0.09 0.04
Matches are distributed among these distances:
611 19 0.04
612 43 0.08
613 440 0.86
614 4 0.01
615 5 0.01
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (615 bp):
CTGCTCTTAACTTATCTTCGTTACTACGAGTTATATAGTATGATCTACTTATTTGTATTTGAGCC
GTGTTATACGCAATGCTGTGTAACTCACCCTTTGTCTTACCTTCATCTGTTCAGGAAAACATCTA
ATTTAGAATCAGACAGCGTACGAGAGCTCGGATTCTTTTACAATGAAATAACTGCGAATTGATCT
TTTGGGTTTGTAAAATATCTTGGATTTGCCTTGCTTTCCATTTGATAATCTCGTCCGTATGAGTC
AATTTCTAACACGAAACTACGAAATCACCTAAATAGAAATAAACAAATTTCTAGTTTACAAAATT
AAATCCCAAAAAGAAATCAATTTTCAATGTCTTGGTGAACTCGTCCAAGTTCGGCTTAAACTTCC
AGGTTGGGTTTGGGGTGTTACATTCAGTGGTATCAACCTGGAATGACTTTCTTGGTGTGTTTCGG
ATGGATGAGTTCGAGAGAGAACTCTATTTTTGTGTGGAACGAAGTTCGGGAAGACTATTTCTAAT
AAATCTACATTCCAATCTGTTTGAAAAATACTGCATCTGCATAAACATACATGTTTTGTTCTGCT
CTGCACCGTTTTGTTCTGTCCTGTTCTATT
Found at i:23256334 original size:13 final size:13
Alignment explanation
Indices: 23256318--23256381 Score: 67
Period size: 13 Copynumber: 4.9 Consensus size: 13
23256308 TTTAAACCAA
*
23256318 ACTTTTTAAAAGC
1 ACTTTTCAAAAGC
* *
23256331 ACTTCTCAAAAGT
1 ACTTTTCAAAAGC
* *
23256344 ACTTTTCCACAGC
1 ACTTTTCAAAAGC
23256357 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
23256370 ACATTTT-AAAAG
1 AC-TTTTCAAAAG
23256382 TATTGCCAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
13 37 0.90
14 4 0.10
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.33
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:23256347 original size:26 final size:26
Alignment explanation
Indices: 23256318--23256381 Score: 74
Period size: 26 Copynumber: 2.5 Consensus size: 26
23256308 TTTAAACCAA
*
23256318 ACTTTTTAAAAGCACTTCTCAAAAGT
1 ACTTTTTAAAAGCACTTCTCAAAAGC
** * *
23256344 ACTTTTCCACAGCACTTTTCAAAAGC
1 ACTTTTTAAAAGCACTTCTCAAAAGC
*
23256370 ACATTTTAAAAG
1 ACTTTTTAAAAG
23256382 TATTGCCAAA
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.33
Consensus pattern (26 bp):
ACTTTTTAAAAGCACTTCTCAAAAGC
Found at i:23257106 original size:20 final size:20
Alignment explanation
Indices: 23257081--23257118 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
23257071 ATACCATTTA
23257081 GTTTTGTTCTGCTCTATTAT
1 GTTTTGTTCTGCTCTATTAT
* *
23257101 GTTTTGTTTTGTTCTATT
1 GTTTTGTTCTGCTCTATT
23257119 GTACTACCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.08, C:0.11, G:0.16, T:0.66
Consensus pattern (20 bp):
GTTTTGTTCTGCTCTATTAT
Found at i:23261734 original size:28 final size:28
Alignment explanation
Indices: 23261694--23261747 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
23261684 ATTTAGCATG
* * *
23261694 TAATTTTTTAGTTGATCAAACAACACTT
1 TAATTTCTCAGTTGATCAAAAAACACTT
*
23261722 TAATTTCTCAGTTTATCAAAAAACAC
1 TAATTTCTCAGTTGATCAAAAAACAC
23261748 CTAAAATTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.39, C:0.17, G:0.06, T:0.39
Consensus pattern (28 bp):
TAATTTCTCAGTTGATCAAAAAACACTT
Found at i:23277718 original size:18 final size:19
Alignment explanation
Indices: 23277695--23277731 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
23277685 GTCATTAAGG
23277695 TGGAAATTAA-CCCAAATT
1 TGGAAATTAACCCCAAATT
23277713 TGGAAATTAACCCCAAATT
1 TGGAAATTAACCCCAAATT
23277732 GGTTTGGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.43, C:0.19, G:0.11, T:0.27
Consensus pattern (19 bp):
TGGAAATTAACCCCAAATT
Done.